Query 003366
Match_columns 826
No_of_seqs 298 out of 1506
Neff 4.1
Searched_HMMs 46136
Date Thu Mar 28 22:09:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003366.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003366hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1845 MORC family ATPases [C 100.0 3E-70 6.6E-75 628.7 22.2 651 73-812 72-767 (775)
2 KOG1845 MORC family ATPases [C 99.9 2.6E-27 5.7E-32 274.5 2.8 287 189-529 1-292 (775)
3 PRK05218 heat shock protein 90 99.7 2.2E-17 4.8E-22 191.0 12.7 114 124-248 6-144 (613)
4 PF13589 HATPase_c_3: Histidin 99.7 1.3E-17 2.7E-22 158.5 3.6 92 154-249 4-97 (137)
5 COG0326 HtpG Molecular chapero 99.7 6.4E-17 1.4E-21 185.2 6.4 132 124-266 7-162 (623)
6 PRK14083 HSP90 family protein; 99.6 1.1E-15 2.3E-20 176.7 10.5 113 124-248 3-129 (601)
7 PTZ00130 heat shock protein 90 99.5 2.8E-15 6E-20 176.6 5.6 131 125-267 69-223 (814)
8 PTZ00272 heat shock protein 83 99.5 2.6E-14 5.7E-19 167.4 5.9 113 125-248 6-141 (701)
9 KOG0019 Molecular chaperone (H 99.3 4.4E-12 9.6E-17 144.4 5.7 134 123-270 36-193 (656)
10 KOG0020 Endoplasmic reticulum 99.2 6.5E-12 1.4E-16 139.9 2.4 111 125-248 76-216 (785)
11 TIGR00585 mutl DNA mismatch re 98.9 1.6E-09 3.5E-14 116.2 8.5 89 150-246 20-114 (312)
12 PRK00095 mutL DNA mismatch rep 98.9 1.8E-09 3.8E-14 126.1 8.6 91 150-248 20-116 (617)
13 COG0323 MutL DNA mismatch repa 98.9 1.5E-09 3.2E-14 127.1 7.4 91 150-248 21-117 (638)
14 COG1389 DNA topoisomerase VI, 98.7 6.5E-08 1.4E-12 108.5 11.7 97 151-248 35-139 (538)
15 PRK05559 DNA topoisomerase IV 98.3 8.1E-07 1.7E-11 104.5 7.0 123 115-248 5-140 (631)
16 TIGR01052 top6b DNA topoisomer 98.2 2.4E-06 5.2E-11 97.8 8.3 99 149-248 25-131 (488)
17 PF02518 HATPase_c: Histidine 98.2 3E-06 6.5E-11 76.1 7.0 91 153-247 6-99 (111)
18 PRK04184 DNA topoisomerase VI 98.2 2.9E-06 6.2E-11 98.1 8.0 98 151-248 35-141 (535)
19 KOG1979 DNA mismatch repair pr 98.1 6.3E-06 1.4E-10 94.8 9.2 91 150-248 25-121 (694)
20 PRK14868 DNA topoisomerase VI 98.1 3.7E-06 8E-11 99.9 7.5 96 151-248 45-148 (795)
21 TIGR01055 parE_Gneg DNA topois 98.0 4.2E-06 9.1E-11 98.5 5.2 108 131-248 13-133 (625)
22 KOG1978 DNA mismatch repair pr 98.0 4.7E-06 1E-10 97.3 4.6 89 150-247 18-113 (672)
23 PRK05644 gyrB DNA gyrase subun 97.9 1.5E-05 3.2E-10 94.1 7.0 123 115-248 5-140 (638)
24 PRK14939 gyrB DNA gyrase subun 97.8 3.2E-05 7E-10 92.7 7.5 111 131-249 16-141 (756)
25 PRK14867 DNA topoisomerase VI 97.8 3.3E-05 7.2E-10 91.3 7.5 94 153-247 37-138 (659)
26 TIGR01059 gyrB DNA gyrase, B s 97.8 2.1E-05 4.5E-10 93.1 5.9 110 131-248 10-133 (654)
27 smart00433 TOP2c Topoisomerase 97.7 1.9E-05 4.2E-10 92.5 3.8 86 157-248 6-104 (594)
28 cd00075 HATPase_c Histidine ki 97.4 0.00042 9.2E-09 58.0 6.9 88 155-246 3-93 (103)
29 COG3290 CitA Signal transducti 97.4 0.00024 5.2E-09 82.1 6.3 90 149-246 425-519 (537)
30 smart00387 HATPase_c Histidine 97.3 0.00057 1.2E-08 58.2 6.5 88 153-244 6-96 (111)
31 PRK10604 sensor protein RstB; 97.1 0.0012 2.7E-08 73.3 8.4 91 151-246 318-411 (433)
32 PRK09470 cpxA two-component se 97.1 0.0014 3E-08 71.5 8.1 91 151-246 352-445 (461)
33 PRK10364 sensor protein ZraS; 97.0 0.0015 3.3E-08 72.4 7.4 87 151-246 347-436 (457)
34 PRK11006 phoR phosphate regulo 97.0 0.0017 3.8E-08 71.5 7.4 93 151-246 316-411 (430)
35 KOG1977 DNA mismatch repair pr 97.0 0.00068 1.5E-08 79.9 4.4 89 152-249 21-115 (1142)
36 TIGR02966 phoR_proteo phosphat 97.0 0.0025 5.3E-08 65.4 8.0 93 151-246 228-323 (333)
37 TIGR01386 cztS_silS_copS heavy 96.9 0.0017 3.7E-08 70.4 6.9 91 151-244 352-445 (457)
38 COG0642 BaeS Signal transducti 96.9 0.002 4.4E-08 64.5 6.4 88 151-246 227-317 (336)
39 PRK10549 signal transduction h 96.8 0.0025 5.5E-08 69.9 7.5 93 152-247 352-447 (466)
40 PRK09303 adaptive-response sen 96.8 0.0038 8.3E-08 68.5 8.6 92 152-247 272-366 (380)
41 TIGR01058 parE_Gpos DNA topois 96.8 0.0022 4.8E-08 76.2 6.8 108 131-248 14-137 (637)
42 PRK11100 sensory histidine kin 96.7 0.0033 7.2E-08 68.4 7.3 92 151-246 367-461 (475)
43 PRK10755 sensor protein BasS/P 96.7 0.0031 6.6E-08 67.4 6.8 91 150-247 245-338 (356)
44 PRK09467 envZ osmolarity senso 96.7 0.0047 1E-07 67.3 8.0 89 151-246 330-421 (435)
45 PRK11086 sensory histidine kin 96.5 0.0073 1.6E-07 67.4 7.8 86 153-246 434-523 (542)
46 TIGR02938 nifL_nitrog nitrogen 96.4 0.0062 1.3E-07 66.1 7.0 89 153-246 388-482 (494)
47 COG0187 GyrB Type IIA topoisom 96.3 0.0039 8.4E-08 73.5 4.8 109 131-249 15-140 (635)
48 PRK11360 sensory histidine kin 96.3 0.011 2.5E-07 65.5 8.0 87 152-246 500-589 (607)
49 PRK15053 dpiB sensor histidine 96.3 0.0071 1.5E-07 68.3 6.5 90 152-246 432-527 (545)
50 TIGR02916 PEP_his_kin putative 96.2 0.0067 1.5E-07 71.7 6.4 85 153-246 580-668 (679)
51 PRK09835 sensor kinase CusS; P 96.2 0.013 2.8E-07 64.6 7.9 92 151-245 374-468 (482)
52 TIGR03785 marine_sort_HK prote 96.1 0.012 2.6E-07 70.4 7.8 94 151-247 596-692 (703)
53 PRK13837 two-component VirA-li 96.0 0.016 3.5E-07 70.1 8.3 89 151-246 559-663 (828)
54 PRK10815 sensor protein PhoQ; 96.0 0.016 3.4E-07 66.3 7.5 85 153-246 379-466 (485)
55 PRK11073 glnL nitrogen regulat 96.0 0.025 5.5E-07 59.9 8.5 89 152-246 237-336 (348)
56 PRK10337 sensor protein QseC; 95.6 0.024 5.2E-07 62.3 6.9 86 151-246 351-439 (449)
57 PF12325 TMF_TATA_bd: TATA ele 95.5 0.16 3.4E-06 49.2 11.1 89 717-809 19-117 (120)
58 PRK11107 hybrid sensory histid 95.4 0.038 8.2E-07 66.4 8.0 94 152-247 408-507 (919)
59 PTZ00108 DNA topoisomerase 2-l 95.3 0.024 5.2E-07 72.4 6.4 88 155-247 60-164 (1388)
60 PHA02569 39 DNA topoisomerase 95.3 0.015 3.2E-07 69.0 4.3 85 157-248 50-152 (602)
61 PLN03237 DNA topoisomerase 2; 95.3 0.026 5.7E-07 72.1 6.4 85 155-245 80-179 (1465)
62 PRK15347 two component system 95.2 0.034 7.3E-07 66.9 6.8 88 151-246 512-602 (921)
63 PTZ00109 DNA gyrase subunit b; 95.2 0.023 5E-07 69.7 5.3 121 117-248 99-272 (903)
64 PF07888 CALCOCO1: Calcium bin 95.2 0.21 4.6E-06 58.7 12.8 81 719-799 155-238 (546)
65 COG1579 Zn-ribbon protein, pos 95.1 0.24 5.3E-06 53.0 11.8 95 718-812 56-173 (239)
66 PRK11091 aerobic respiration c 94.9 0.064 1.4E-06 64.0 8.0 92 152-246 398-493 (779)
67 PLN03128 DNA topoisomerase 2; 94.8 0.041 8.8E-07 69.5 6.2 86 155-245 55-154 (1135)
68 PRK10490 sensor protein KdpD; 94.8 0.055 1.2E-06 66.8 7.2 91 151-246 777-870 (895)
69 PRK10547 chemotaxis protein Ch 94.8 0.089 1.9E-06 63.3 8.8 89 155-246 388-511 (670)
70 PRK11466 hybrid sensory histid 94.8 0.06 1.3E-06 65.1 7.3 89 151-247 560-651 (914)
71 TIGR01925 spIIAB anti-sigma F 94.7 0.095 2.1E-06 49.2 7.0 85 153-246 40-126 (137)
72 COG2433 Uncharacterized conser 94.7 0.22 4.8E-06 58.9 11.4 87 733-819 420-512 (652)
73 PRK04069 serine-protein kinase 94.7 0.047 1E-06 53.8 5.1 85 155-244 45-131 (161)
74 TIGR02956 TMAO_torS TMAO reduc 94.7 0.071 1.5E-06 64.7 7.7 90 151-246 578-671 (968)
75 PF09726 Macoilin: Transmembra 94.6 0.1 2.3E-06 63.0 8.8 39 720-758 459-497 (697)
76 PRK10841 hybrid sensory kinase 94.4 0.079 1.7E-06 65.6 7.3 92 151-246 561-655 (924)
77 COG4191 Signal transduction hi 94.3 0.063 1.4E-06 63.3 5.8 59 155-215 500-559 (603)
78 PRK13557 histidine kinase; Pro 94.3 0.12 2.6E-06 57.4 7.8 90 152-246 277-382 (540)
79 PRK10618 phosphotransfer inter 94.3 0.092 2E-06 65.0 7.5 94 151-247 564-661 (894)
80 PRK09959 hybrid sensory histid 94.1 0.14 2.9E-06 64.2 8.3 94 151-246 827-924 (1197)
81 TIGR01924 rsbW_low_gc serine-p 93.9 0.12 2.6E-06 51.1 6.1 85 155-244 45-131 (159)
82 PF13581 HATPase_c_2: Histidin 93.8 0.14 3E-06 47.3 6.0 80 153-242 32-113 (125)
83 PRK11644 sensory histidine kin 93.8 0.14 3E-06 59.1 7.2 70 152-244 410-482 (495)
84 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.7 1.6 3.4E-05 42.4 13.2 94 721-814 24-124 (132)
85 PF10267 Tmemb_cc2: Predicted 93.3 2.8 6.1E-05 48.0 16.2 76 723-798 221-315 (395)
86 KOG3850 Predicted membrane pro 93.2 6.1 0.00013 45.2 18.1 67 723-789 262-353 (455)
87 PF06705 SF-assemblin: SF-asse 93.0 1.1 2.4E-05 47.4 11.9 47 767-813 125-171 (247)
88 PRK03660 anti-sigma F factor; 93.0 0.31 6.6E-06 46.2 7.0 83 154-245 41-125 (146)
89 COG3850 NarQ Signal transducti 92.4 0.21 4.5E-06 58.6 5.9 74 155-248 484-558 (574)
90 PF11559 ADIP: Afadin- and alp 92.2 1.3 2.8E-05 43.4 10.3 72 727-798 72-150 (151)
91 PF04156 IncA: IncA protein; 91.8 2.9 6.4E-05 42.1 12.7 64 720-783 87-150 (191)
92 KOG0787 Dehydrogenase kinase [ 91.5 0.31 6.8E-06 55.1 5.9 88 156-245 264-367 (414)
93 COG2972 Predicted signal trans 91.5 0.17 3.6E-06 57.7 3.9 81 156-246 354-440 (456)
94 COG4585 Signal transduction hi 91.4 0.26 5.7E-06 54.0 5.1 74 150-246 277-353 (365)
95 PRK10600 nitrate/nitrite senso 91.2 0.27 5.8E-06 56.9 5.2 75 151-247 468-545 (569)
96 PF14362 DUF4407: Domain of un 91.1 1.3 2.8E-05 47.9 9.9 100 720-819 141-256 (301)
97 PRK10884 SH3 domain-containing 90.7 2.3 5E-05 44.6 11.0 56 717-775 89-144 (206)
98 COG0643 CheA Chemotaxis protei 90.7 0.72 1.6E-05 56.2 8.3 89 156-247 436-562 (716)
99 PF10186 Atg14: UV radiation r 90.5 4.5 9.8E-05 42.7 13.1 67 721-787 27-108 (302)
100 KOG0161 Myosin class II heavy 90.5 2.3 5E-05 56.8 12.9 92 720-811 1089-1183(1930)
101 PF15254 CCDC14: Coiled-coil d 90.3 2.7 5.9E-05 51.4 12.3 94 723-816 389-522 (861)
102 PRK13560 hypothetical protein; 90.2 0.29 6.3E-06 57.4 4.3 73 156-245 715-792 (807)
103 PRK11637 AmiB activator; Provi 90.1 4.1 8.9E-05 46.4 13.2 79 731-809 176-254 (428)
104 PF04156 IncA: IncA protein; 90.0 5.7 0.00012 40.1 12.8 88 726-813 79-169 (191)
105 KOG0243 Kinesin-like protein [ 89.7 3.6 7.8E-05 51.9 13.1 98 722-820 449-564 (1041)
106 COG4192 Signal transduction hi 89.2 0.66 1.4E-05 54.0 6.0 63 153-216 565-627 (673)
107 KOG0977 Nuclear envelope prote 89.2 2.7 5.9E-05 49.9 11.0 93 719-815 111-217 (546)
108 KOG0250 DNA repair protein RAD 89.1 3 6.6E-05 52.5 11.9 88 720-807 364-462 (1074)
109 COG4026 Uncharacterized protei 89.1 2.9 6.4E-05 44.7 10.1 68 729-800 129-203 (290)
110 PF12128 DUF3584: Protein of u 88.7 4.3 9.4E-05 52.2 13.3 98 722-819 772-886 (1201)
111 COG2205 KdpD Osmosensitive K+ 88.2 0.77 1.7E-05 56.4 5.9 88 153-246 776-867 (890)
112 TIGR03185 DNA_S_dndD DNA sulfu 87.6 3.8 8.3E-05 49.2 11.2 55 749-803 230-284 (650)
113 PRK04778 septation ring format 87.6 3.7 8E-05 48.7 11.0 79 723-805 350-428 (569)
114 PF07200 Mod_r: Modifier of ru 87.4 5.8 0.00012 38.8 10.5 93 720-812 33-134 (150)
115 TIGR03185 DNA_S_dndD DNA sulfu 87.2 5.7 0.00012 47.7 12.4 84 733-816 207-290 (650)
116 TIGR02169 SMC_prok_A chromosom 87.2 6.1 0.00013 49.3 13.0 20 188-209 25-44 (1164)
117 KOG1962 B-cell receptor-associ 86.4 2.1 4.5E-05 45.5 7.2 46 726-771 149-194 (216)
118 PF00038 Filament: Intermediat 86.1 8.4 0.00018 41.6 11.9 80 723-809 211-290 (312)
119 KOG0804 Cytoplasmic Zn-finger 86.1 9.3 0.0002 44.5 12.5 66 749-814 382-447 (493)
120 PF15294 Leu_zip: Leucine zipp 86.0 7.4 0.00016 42.9 11.3 45 719-763 130-174 (278)
121 COG5000 NtrY Signal transducti 85.8 1.2 2.6E-05 53.4 5.6 56 154-209 602-661 (712)
122 PRK11637 AmiB activator; Provi 85.8 9 0.00019 43.7 12.4 19 723-741 49-67 (428)
123 KOG0612 Rho-associated, coiled 85.4 4.6 9.9E-05 51.6 10.4 69 744-812 503-584 (1317)
124 PF03962 Mnd1: Mnd1 family; I 85.3 11 0.00024 39.0 11.7 62 720-781 68-135 (188)
125 PF06785 UPF0242: Uncharacteri 84.8 5.4 0.00012 44.9 9.6 60 749-808 141-221 (401)
126 COG3920 Signal transduction hi 84.8 1.4 3.1E-05 46.2 5.1 59 142-202 114-174 (221)
127 KOG4360 Uncharacterized coiled 84.6 13 0.00029 43.9 13.0 99 722-820 203-307 (596)
128 PRK04863 mukB cell division pr 84.3 2.9 6.4E-05 54.9 8.6 101 717-817 988-1117(1486)
129 PF10473 CENP-F_leu_zip: Leuci 84.3 17 0.00036 36.5 11.9 90 723-816 12-101 (140)
130 PRK05431 seryl-tRNA synthetase 84.2 7.6 0.00016 44.7 11.0 97 723-822 4-106 (425)
131 PLN02320 seryl-tRNA synthetase 84.0 7.3 0.00016 46.1 10.8 97 723-822 69-170 (502)
132 PRK00409 recombination and DNA 83.8 11 0.00024 46.7 12.8 14 154-167 128-141 (782)
133 smart00502 BBC B-Box C-termina 83.7 35 0.00075 31.1 13.4 81 731-811 10-98 (127)
134 KOG2129 Uncharacterized conser 83.5 4 8.7E-05 47.0 8.2 80 720-799 135-226 (552)
135 PF07888 CALCOCO1: Calcium bin 83.4 14 0.00029 44.3 12.7 89 724-812 146-237 (546)
136 TIGR01069 mutS2 MutS2 family p 83.3 9.9 0.00021 47.0 12.1 13 155-167 124-136 (771)
137 KOG1962 B-cell receptor-associ 83.3 7.1 0.00015 41.6 9.4 70 728-797 134-209 (216)
138 PHA02562 46 endonuclease subun 82.8 13 0.00029 43.1 12.4 30 174-209 19-48 (562)
139 PRK10780 periplasmic chaperone 82.8 13 0.00029 37.2 10.8 81 723-803 45-131 (165)
140 TIGR02449 conserved hypothetic 82.8 11 0.00023 33.4 8.8 61 752-816 3-63 (65)
141 PF12128 DUF3584: Protein of u 82.7 11 0.00023 48.8 12.5 60 719-778 734-800 (1201)
142 PRK13559 hypothetical protein; 82.7 1.7 3.6E-05 46.7 4.7 75 153-246 268-348 (361)
143 PF04111 APG6: Autophagy prote 82.5 18 0.0004 40.2 12.7 62 751-816 73-134 (314)
144 PRK10884 SH3 domain-containing 82.4 9.6 0.00021 40.1 10.0 45 727-771 85-133 (206)
145 PRK10935 nitrate/nitrite senso 82.3 1.8 3.9E-05 49.3 5.1 47 153-202 472-518 (565)
146 PF15236 CCDC66: Coiled-coil d 82.2 41 0.0009 34.4 13.9 42 764-805 88-129 (157)
147 PF00769 ERM: Ezrin/radixin/mo 82.2 16 0.00035 39.3 11.8 39 773-811 88-126 (246)
148 PF13851 GAS: Growth-arrest sp 82.1 16 0.00035 38.2 11.4 80 723-806 50-139 (201)
149 PRK04778 septation ring format 81.9 17 0.00036 43.4 12.9 97 719-815 315-431 (569)
150 KOG1853 LIS1-interacting prote 81.8 16 0.00035 40.0 11.4 63 754-816 57-119 (333)
151 PF08317 Spc7: Spc7 kinetochor 81.4 15 0.00032 40.7 11.6 41 776-816 225-265 (325)
152 PF14662 CCDC155: Coiled-coil 81.4 22 0.00047 37.5 11.9 62 750-811 75-139 (193)
153 TIGR03752 conj_TIGR03752 integ 81.4 11 0.00025 44.1 11.0 80 723-812 61-140 (472)
154 KOG0971 Microtubule-associated 81.2 4.8 0.00011 50.0 8.2 97 707-805 950-1057(1243)
155 PF12718 Tropomyosin_1: Tropom 81.1 31 0.00068 34.3 12.5 51 723-773 16-66 (143)
156 PF13851 GAS: Growth-arrest sp 81.0 32 0.00069 36.0 13.1 50 722-771 28-77 (201)
157 PRK02224 chromosome segregatio 80.9 18 0.00038 44.7 13.1 32 749-780 213-244 (880)
158 TIGR00606 rad50 rad50. This fa 80.6 13 0.00027 48.5 12.2 60 749-808 895-954 (1311)
159 PF02403 Seryl_tRNA_N: Seryl-t 80.6 15 0.00032 34.0 9.6 98 723-822 4-107 (108)
160 PF04949 Transcrip_act: Transc 80.5 16 0.00035 37.1 10.2 52 749-804 105-157 (159)
161 PRK09039 hypothetical protein; 80.5 13 0.00029 41.7 10.8 46 733-778 114-159 (343)
162 PF07989 Microtub_assoc: Micro 80.4 8.6 0.00019 34.6 7.6 26 720-745 6-31 (75)
163 PRK09039 hypothetical protein; 80.2 21 0.00045 40.2 12.3 59 723-781 48-106 (343)
164 PRK09343 prefoldin subunit bet 79.9 37 0.0008 32.9 12.2 84 729-812 8-116 (121)
165 PF12718 Tropomyosin_1: Tropom 79.6 38 0.00082 33.8 12.6 16 754-769 54-69 (143)
166 PF12777 MT: Microtubule-bindi 79.5 6.1 0.00013 44.0 7.8 72 723-798 237-308 (344)
167 PF08317 Spc7: Spc7 kinetochor 79.3 32 0.0007 38.2 13.3 13 384-396 13-25 (325)
168 PRK00106 hypothetical protein; 79.1 28 0.0006 41.7 13.4 16 792-807 140-155 (535)
169 KOG0250 DNA repair protein RAD 79.1 20 0.00044 45.6 12.7 56 749-804 295-353 (1074)
170 TIGR02168 SMC_prok_B chromosom 79.1 22 0.00048 44.3 13.2 10 189-198 26-35 (1179)
171 PF05911 DUF869: Plant protein 79.1 6.4 0.00014 48.7 8.5 93 723-816 668-761 (769)
172 PF13256 DUF4047: Domain of un 79.1 25 0.00055 34.6 10.7 95 714-814 23-119 (125)
173 smart00787 Spc7 Spc7 kinetocho 79.1 32 0.00069 38.5 13.1 40 777-816 221-260 (312)
174 PF10482 CtIP_N: Tumour-suppre 79.1 11 0.00023 36.8 8.2 74 724-797 45-119 (120)
175 PF09789 DUF2353: Uncharacteri 78.7 18 0.00039 40.7 11.0 71 745-815 22-113 (319)
176 PF15619 Lebercilin: Ciliary p 78.6 36 0.00079 35.6 12.6 21 722-742 62-82 (194)
177 COG2172 RsbW Anti-sigma regula 78.6 5.1 0.00011 39.8 6.2 87 151-246 39-128 (146)
178 COG1196 Smc Chromosome segrega 78.6 21 0.00045 46.0 13.1 63 752-814 852-917 (1163)
179 PRK02224 chromosome segregatio 78.6 12 0.00026 46.1 10.6 42 728-769 258-299 (880)
180 PF04849 HAP1_N: HAP1 N-termin 78.5 30 0.00065 38.8 12.5 84 733-816 218-304 (306)
181 COG1579 Zn-ribbon protein, pos 78.5 23 0.0005 38.4 11.4 63 750-815 60-123 (239)
182 COG1196 Smc Chromosome segrega 78.5 20 0.00043 46.3 12.8 94 723-816 399-495 (1163)
183 PF07334 IFP_35_N: Interferon- 78.4 2 4.3E-05 38.9 3.0 25 722-746 1-25 (76)
184 KOG1029 Endocytic adaptor prot 77.8 13 0.00027 46.0 10.0 40 767-807 424-463 (1118)
185 PF10186 Atg14: UV radiation r 77.7 38 0.00082 35.8 12.8 42 725-766 67-108 (302)
186 TIGR02168 SMC_prok_B chromosom 77.6 26 0.00056 43.7 13.2 14 195-208 115-128 (1179)
187 smart00787 Spc7 Spc7 kinetocho 77.6 24 0.00051 39.4 11.6 15 804-818 273-287 (312)
188 PF07200 Mod_r: Modifier of ru 77.2 16 0.00035 35.7 9.1 63 749-811 48-115 (150)
189 KOG0239 Kinesin (KAR3 subfamil 76.4 14 0.00031 45.2 10.2 89 720-813 226-318 (670)
190 PF09789 DUF2353: Uncharacteri 75.8 26 0.00055 39.5 11.2 88 722-809 31-154 (319)
191 PF05622 HOOK: HOOK protein; 75.7 0.89 1.9E-05 55.1 0.0 78 723-800 241-327 (713)
192 PF06785 UPF0242: Uncharacteri 75.5 30 0.00065 39.3 11.5 63 749-811 123-185 (401)
193 KOG0804 Cytoplasmic Zn-finger 75.4 27 0.00058 40.9 11.4 41 731-771 385-425 (493)
194 COG4345 Uncharacterized protei 75.3 12 0.00025 38.7 7.7 52 753-815 122-173 (181)
195 PF05911 DUF869: Plant protein 74.9 30 0.00066 43.1 12.5 92 723-814 58-160 (769)
196 KOG0982 Centrosomal protein Nu 74.9 37 0.00081 39.6 12.3 75 724-798 246-349 (502)
197 PF06705 SF-assemblin: SF-asse 74.8 47 0.001 35.3 12.6 81 730-810 36-139 (247)
198 PF10473 CENP-F_leu_zip: Leuci 74.7 42 0.00092 33.7 11.3 84 723-814 54-138 (140)
199 PF03938 OmpH: Outer membrane 74.7 52 0.0011 32.1 11.9 28 722-749 37-64 (158)
200 PF08172 CASP_C: CASP C termin 74.6 13 0.00028 40.2 8.4 84 731-814 2-119 (248)
201 KOG0976 Rho/Rac1-interacting s 74.4 31 0.00068 43.0 12.0 66 720-785 98-163 (1265)
202 KOG4673 Transcription factor T 74.0 42 0.00092 41.3 12.8 85 714-802 338-444 (961)
203 PLN02678 seryl-tRNA synthetase 73.9 31 0.00068 40.4 11.8 98 723-822 4-111 (448)
204 PRK00409 recombination and DNA 73.8 32 0.0007 42.8 12.5 29 753-781 567-595 (782)
205 PF06005 DUF904: Protein of un 73.0 53 0.0012 29.5 10.4 32 781-812 39-70 (72)
206 PF09421 FRQ: Frequency clock 72.6 18 0.00038 45.8 9.8 45 712-758 128-172 (989)
207 PF10168 Nup88: Nuclear pore c 72.5 42 0.00091 41.5 12.9 65 749-814 586-665 (717)
208 KOG0963 Transcription factor/C 71.9 30 0.00065 41.9 11.1 93 720-815 248-344 (629)
209 PF15619 Lebercilin: Ciliary p 71.6 75 0.0016 33.3 12.8 67 749-815 82-152 (194)
210 COG0419 SbcC ATPase involved i 71.2 40 0.00086 42.4 12.6 41 740-780 313-353 (908)
211 PHA02562 46 endonuclease subun 71.0 33 0.00072 39.9 11.2 19 332-350 7-25 (562)
212 PF09755 DUF2046: Uncharacteri 70.6 23 0.0005 39.7 9.2 31 768-798 172-202 (310)
213 PF00435 Spectrin: Spectrin re 70.5 69 0.0015 27.5 11.8 80 725-811 5-96 (105)
214 PRK03918 chromosome segregatio 70.4 59 0.0013 40.1 13.7 35 782-816 399-433 (880)
215 PRK03918 chromosome segregatio 70.3 54 0.0012 40.4 13.3 9 190-198 27-35 (880)
216 TIGR02894 DNA_bind_RsfA transc 70.2 20 0.00044 36.8 8.0 35 749-783 118-152 (161)
217 KOG4593 Mitotic checkpoint pro 69.9 48 0.001 40.8 12.2 26 781-806 147-172 (716)
218 PF00038 Filament: Intermediat 69.8 83 0.0018 34.1 13.2 66 750-815 217-289 (312)
219 PF00261 Tropomyosin: Tropomyo 69.6 80 0.0017 33.5 12.8 67 749-815 134-203 (237)
220 PF12329 TMF_DNA_bd: TATA elem 69.6 25 0.00054 31.5 7.6 18 722-739 13-30 (74)
221 PF08614 ATG16: Autophagy prot 69.5 45 0.00098 34.3 10.6 54 723-776 104-157 (194)
222 PRK09174 F0F1 ATP synthase sub 69.5 76 0.0016 33.4 12.4 76 730-805 79-159 (204)
223 COG3851 UhpB Signal transducti 69.4 6.3 0.00014 45.1 4.7 63 136-202 394-456 (497)
224 PF04111 APG6: Autophagy prote 69.3 42 0.00091 37.4 11.1 20 723-742 52-71 (314)
225 PF05529 Bap31: B-cell recepto 69.3 21 0.00045 36.5 8.1 60 754-816 130-189 (192)
226 TIGR01843 type_I_hlyD type I s 69.2 66 0.0014 35.6 12.6 17 798-814 249-265 (423)
227 TIGR00414 serS seryl-tRNA synt 68.8 33 0.00071 39.6 10.4 98 723-822 4-109 (418)
228 COG3074 Uncharacterized protei 68.7 25 0.00055 31.8 7.3 28 749-776 32-59 (79)
229 PF13118 DUF3972: Protein of u 68.6 6.1 0.00013 38.9 3.9 40 722-761 86-125 (126)
230 PF04012 PspA_IM30: PspA/IM30 68.4 76 0.0017 32.9 12.1 95 713-812 20-136 (221)
231 PF00261 Tropomyosin: Tropomyo 68.2 90 0.002 33.1 12.8 86 723-812 143-235 (237)
232 PF06160 EzrA: Septation ring 68.0 33 0.00073 40.9 10.6 48 753-804 376-423 (560)
233 PRK01156 chromosome segregatio 67.0 49 0.0011 41.2 12.2 25 791-815 412-436 (895)
234 PF01025 GrpE: GrpE; InterPro 67.0 34 0.00073 33.8 8.8 88 721-811 18-108 (165)
235 PF07798 DUF1640: Protein of u 66.8 99 0.0021 31.5 12.3 59 754-812 85-144 (177)
236 COG4251 Bacteriophytochrome (l 66.7 7.3 0.00016 47.2 4.7 70 136-209 622-691 (750)
237 PF03962 Mnd1: Mnd1 family; I 66.6 33 0.00072 35.6 9.0 24 781-804 103-126 (188)
238 PF12329 TMF_DNA_bd: TATA elem 66.2 53 0.0012 29.4 9.0 65 735-799 5-72 (74)
239 PF10174 Cast: RIM-binding pro 66.1 70 0.0015 40.1 12.9 94 722-815 309-405 (775)
240 PRK07353 F0F1 ATP synthase sub 66.1 1.1E+02 0.0023 29.5 11.9 47 733-779 34-80 (140)
241 KOG1899 LAR transmembrane tyro 65.6 33 0.00072 41.7 9.6 67 731-808 149-215 (861)
242 PF05384 DegS: Sensor protein 65.6 1.5E+02 0.0032 30.5 13.1 48 719-766 18-65 (159)
243 PRK10476 multidrug resistance 65.3 59 0.0013 35.8 11.2 63 713-775 78-140 (346)
244 TIGR02231 conserved hypothetic 65.3 52 0.0011 38.6 11.4 44 773-816 130-173 (525)
245 PRK12705 hypothetical protein; 64.4 32 0.00069 41.0 9.3 51 723-773 72-122 (508)
246 CHL00118 atpG ATP synthase CF0 64.4 1.3E+02 0.0029 29.9 12.4 50 733-782 51-100 (156)
247 PF05701 WEMBL: Weak chloropla 64.1 67 0.0014 38.2 12.0 65 751-815 283-350 (522)
248 PF05335 DUF745: Protein of un 63.8 1.7E+02 0.0036 30.8 13.4 95 720-814 66-163 (188)
249 TIGR00606 rad50 rad50. This fa 63.8 66 0.0014 42.2 12.8 13 727-739 798-810 (1311)
250 KOG4403 Cell surface glycoprot 63.8 42 0.00091 39.3 9.7 17 788-804 309-325 (575)
251 PF08614 ATG16: Autophagy prot 63.5 94 0.002 32.0 11.6 44 766-809 136-179 (194)
252 TIGR03495 phage_LysB phage lys 63.4 82 0.0018 31.6 10.6 78 726-814 17-94 (135)
253 PF01920 Prefoldin_2: Prefoldi 63.3 88 0.0019 28.3 10.2 76 731-813 8-101 (106)
254 KOG3990 Uncharacterized conser 62.9 61 0.0013 35.7 10.2 23 722-744 226-248 (305)
255 PRK05759 F0F1 ATP synthase sub 62.9 1.3E+02 0.0027 29.5 11.9 46 733-778 33-78 (156)
256 COG5002 VicK Signal transducti 62.8 8.1 0.00018 44.2 4.0 73 154-230 344-417 (459)
257 PRK14473 F0F1 ATP synthase sub 62.5 1.5E+02 0.0032 29.6 12.4 44 734-777 38-81 (164)
258 PF02646 RmuC: RmuC family; I 62.3 35 0.00075 37.7 8.7 83 718-800 3-85 (304)
259 PF13870 DUF4201: Domain of un 62.3 69 0.0015 32.3 10.2 67 723-789 44-124 (177)
260 PF10211 Ax_dynein_light: Axon 61.7 1.2E+02 0.0027 31.4 12.1 24 720-743 83-106 (189)
261 PRK07352 F0F1 ATP synthase sub 61.7 1.3E+02 0.0027 30.5 11.9 47 733-779 48-94 (174)
262 PF06637 PV-1: PV-1 protein (P 61.7 86 0.0019 36.3 11.6 88 719-811 290-379 (442)
263 PF04859 DUF641: Plant protein 61.7 21 0.00046 35.4 6.2 78 722-807 50-127 (131)
264 PF09731 Mitofilin: Mitochondr 61.3 1.2E+02 0.0025 36.2 13.3 23 777-799 367-389 (582)
265 PF04871 Uso1_p115_C: Uso1 / p 61.1 64 0.0014 32.0 9.4 17 766-782 80-96 (136)
266 PF00769 ERM: Ezrin/radixin/mo 61.0 90 0.002 33.7 11.3 87 727-813 4-100 (246)
267 PRK01156 chromosome segregatio 61.0 66 0.0014 40.1 11.7 18 331-350 5-22 (895)
268 PRK14143 heat shock protein Gr 61.0 53 0.0012 35.6 9.5 21 723-743 76-96 (238)
269 PF14282 FlxA: FlxA-like prote 61.0 24 0.00053 33.4 6.3 51 722-772 20-74 (106)
270 PF09787 Golgin_A5: Golgin sub 60.8 85 0.0019 37.1 12.0 92 723-815 276-382 (511)
271 PF13747 DUF4164: Domain of un 60.8 1E+02 0.0022 28.6 10.1 17 793-809 72-88 (89)
272 PF15254 CCDC14: Coiled-coil d 60.8 66 0.0014 40.1 11.1 86 719-812 460-556 (861)
273 smart00502 BBC B-Box C-termina 60.7 1.3E+02 0.0029 27.3 12.0 26 764-789 62-87 (127)
274 TIGR00998 8a0101 efflux pump m 60.6 89 0.0019 33.8 11.4 68 712-779 71-138 (334)
275 PRK13729 conjugal transfer pil 60.6 27 0.00058 41.2 7.7 25 790-814 99-123 (475)
276 PF10168 Nup88: Nuclear pore c 60.5 55 0.0012 40.5 10.7 17 106-122 110-126 (717)
277 PF05557 MAD: Mitotic checkpoi 60.5 15 0.00034 44.7 6.1 61 721-781 566-631 (722)
278 KOG0933 Structural maintenance 60.3 59 0.0013 41.6 10.8 89 720-808 793-891 (1174)
279 PF11932 DUF3450: Protein of u 60.3 1.6E+02 0.0036 31.4 13.0 44 769-812 72-115 (251)
280 TIGR01843 type_I_hlyD type I s 59.6 1.3E+02 0.0029 33.3 12.7 25 789-813 247-271 (423)
281 PF12072 DUF3552: Domain of un 59.5 2.1E+02 0.0045 29.9 13.3 14 731-744 81-94 (201)
282 KOG0963 Transcription factor/C 59.2 93 0.002 38.0 11.8 81 727-807 120-208 (629)
283 KOG2002 TPR-containing nuclear 59.1 1.1E+02 0.0024 39.2 12.8 57 744-800 808-873 (1018)
284 PF12072 DUF3552: Domain of un 59.1 2E+02 0.0043 30.0 13.1 15 761-775 94-108 (201)
285 PF10153 DUF2361: Uncharacteri 58.6 53 0.0012 32.0 8.2 63 751-815 30-95 (114)
286 TIGR02473 flagell_FliJ flagell 58.4 1.7E+02 0.0037 27.8 12.2 48 719-766 4-51 (141)
287 PF09325 Vps5: Vps5 C terminal 58.3 78 0.0017 32.6 10.0 68 731-798 145-213 (236)
288 PF10174 Cast: RIM-binding pro 58.2 87 0.0019 39.3 11.9 48 760-807 433-484 (775)
289 TIGR03007 pepcterm_ChnLen poly 58.2 86 0.0019 36.3 11.3 27 722-748 162-188 (498)
290 PRK10361 DNA recombination pro 58.0 92 0.002 37.0 11.5 62 735-796 60-121 (475)
291 PF14182 YgaB: YgaB-like prote 57.9 50 0.0011 30.4 7.3 32 733-764 6-39 (79)
292 PRK06231 F0F1 ATP synthase sub 57.8 1.4E+02 0.0031 31.3 11.9 52 733-784 77-128 (205)
293 KOG4552 Vitamin-D-receptor int 57.6 89 0.0019 33.7 10.1 44 773-816 73-123 (272)
294 PF10146 zf-C4H2: Zinc finger- 57.4 1.4E+02 0.003 32.3 11.9 11 780-790 73-83 (230)
295 PRK04863 mukB cell division pr 57.4 1.1E+02 0.0023 41.2 13.1 27 503-529 192-221 (1486)
296 KOG0161 Myosin class II heavy 57.3 1.1E+02 0.0023 42.2 13.0 23 485-509 444-467 (1930)
297 PF11577 NEMO: NF-kappa-B esse 57.2 31 0.00066 30.8 5.8 19 722-740 7-25 (68)
298 TIGR02977 phageshock_pspA phag 57.2 1.6E+02 0.0035 31.0 12.2 87 729-815 32-126 (219)
299 PRK14153 heat shock protein Gr 57.1 76 0.0017 33.5 9.7 12 726-737 45-56 (194)
300 TIGR03017 EpsF chain length de 57.1 69 0.0015 36.3 10.2 27 722-748 172-198 (444)
301 PF06160 EzrA: Septation ring 57.0 1.4E+02 0.003 35.8 13.0 103 720-822 312-438 (560)
302 PF09726 Macoilin: Transmembra 56.9 1.1E+02 0.0023 38.1 12.2 62 733-794 543-611 (697)
303 TIGR03007 pepcterm_ChnLen poly 56.6 1.1E+02 0.0023 35.5 11.7 62 754-815 315-382 (498)
304 COG0172 SerS Seryl-tRNA synthe 56.5 64 0.0014 37.8 9.8 90 722-814 3-101 (429)
305 PRK13455 F0F1 ATP synthase sub 56.5 1.7E+02 0.0036 29.9 11.9 49 731-779 54-102 (184)
306 PF09755 DUF2046: Uncharacteri 56.4 2.9E+02 0.0062 31.4 14.3 52 719-777 25-98 (310)
307 PF07798 DUF1640: Protein of u 56.3 93 0.002 31.7 10.0 21 779-799 129-149 (177)
308 TIGR03321 alt_F1F0_F0_B altern 56.3 1.7E+02 0.0038 31.2 12.4 45 733-777 34-78 (246)
309 PF09728 Taxilin: Myosin-like 56.1 1.2E+02 0.0026 33.8 11.6 69 743-811 54-126 (309)
310 COG5124 Protein predicted to b 56.0 49 0.0011 34.8 7.8 66 744-816 77-148 (209)
311 PF15188 CCDC-167: Coiled-coil 55.9 22 0.00047 33.1 4.8 53 723-775 7-62 (85)
312 PF07795 DUF1635: Protein of u 55.9 65 0.0014 34.6 8.9 58 758-815 3-60 (214)
313 PRK13461 F0F1 ATP synthase sub 55.6 2E+02 0.0042 28.6 11.9 45 733-777 34-78 (159)
314 KOG3433 Protein involved in me 55.5 1.1E+02 0.0023 32.5 10.2 57 714-770 39-102 (203)
315 PRK08475 F0F1 ATP synthase sub 55.4 1.9E+02 0.0041 29.4 11.9 50 732-781 50-99 (167)
316 PF13870 DUF4201: Domain of un 55.2 49 0.0011 33.4 7.8 22 784-805 155-176 (177)
317 TIGR01554 major_cap_HK97 phage 55.0 43 0.00092 37.6 8.0 53 723-775 1-53 (378)
318 PF01025 GrpE: GrpE; InterPro 55.0 25 0.00054 34.7 5.5 18 723-740 13-30 (165)
319 PF11544 Spc42p: Spindle pole 54.6 39 0.00086 30.9 6.1 42 726-771 3-44 (76)
320 PRK07720 fliJ flagellar biosyn 54.5 2.2E+02 0.0047 27.8 12.6 49 719-767 7-55 (146)
321 PF07106 TBPIP: Tat binding pr 54.5 51 0.0011 33.1 7.7 20 723-742 74-93 (169)
322 KOG3433 Protein involved in me 54.4 1.2E+02 0.0026 32.1 10.3 14 793-806 156-169 (203)
323 PF13863 DUF4200: Domain of un 54.3 1.9E+02 0.0042 27.2 12.7 36 781-816 74-109 (126)
324 COG3883 Uncharacterized protei 53.8 2E+02 0.0043 31.9 12.4 25 720-744 79-103 (265)
325 PF04849 HAP1_N: HAP1 N-termin 53.3 68 0.0015 36.1 9.0 65 723-787 215-286 (306)
326 COG4942 Membrane-bound metallo 53.2 1E+02 0.0022 36.1 10.7 66 744-809 43-108 (420)
327 PF05667 DUF812: Protein of un 53.0 1.4E+02 0.003 36.5 12.1 28 786-813 445-472 (594)
328 COG2433 Uncharacterized conser 52.9 95 0.0021 37.9 10.6 25 720-744 428-452 (652)
329 PF13874 Nup54: Nucleoporin co 52.9 33 0.0007 33.9 5.9 21 785-805 104-124 (141)
330 KOG4403 Cell surface glycoprot 52.9 1.6E+02 0.0035 34.8 12.0 93 723-815 254-374 (575)
331 KOG3915 Transcription regulato 52.8 32 0.0007 40.5 6.6 51 744-794 537-594 (641)
332 cd07643 I-BAR_IMD_MIM Inverse 52.7 2.5E+02 0.0055 30.6 12.7 91 722-814 98-223 (231)
333 TIGR02680 conserved hypothetic 52.6 1.5E+02 0.0033 39.4 13.3 15 194-208 138-152 (1353)
334 PF05667 DUF812: Protein of un 52.6 1.4E+02 0.003 36.5 12.0 24 792-815 444-467 (594)
335 PF12777 MT: Microtubule-bindi 52.5 25 0.00055 39.2 5.7 70 725-805 218-287 (344)
336 PF02841 GBP_C: Guanylate-bind 52.5 1.4E+02 0.003 32.7 11.2 19 749-767 236-254 (297)
337 PRK14472 F0F1 ATP synthase sub 52.3 2.6E+02 0.0057 28.3 12.4 46 733-778 47-92 (175)
338 CHL00019 atpF ATP synthase CF0 52.2 2.2E+02 0.0047 29.1 11.9 47 733-779 53-99 (184)
339 PF07106 TBPIP: Tat binding pr 52.1 1.2E+02 0.0025 30.5 9.8 23 722-744 80-102 (169)
340 PF05266 DUF724: Protein of un 52.1 2.1E+02 0.0046 30.0 11.9 69 718-791 94-162 (190)
341 KOG0243 Kinesin-like protein [ 52.0 1.6E+02 0.0035 38.0 12.8 81 721-801 404-500 (1041)
342 COG4026 Uncharacterized protei 51.6 52 0.0011 35.7 7.4 11 788-798 177-187 (290)
343 KOG1029 Endocytic adaptor prot 51.5 1.4E+02 0.0031 37.5 11.8 9 497-505 186-194 (1118)
344 COG1730 GIM5 Predicted prefold 51.3 2.5E+02 0.0055 28.5 11.8 73 742-814 23-134 (145)
345 PRK14141 heat shock protein Gr 51.3 1.7E+02 0.0037 31.2 11.2 92 717-811 34-134 (209)
346 COG3883 Uncharacterized protei 51.3 1.5E+02 0.0032 32.9 11.0 70 722-795 149-218 (265)
347 PF04012 PspA_IM30: PspA/IM30 51.3 3E+02 0.0065 28.6 13.0 29 749-777 91-119 (221)
348 PRK13411 molecular chaperone D 51.2 99 0.0021 37.7 10.7 64 749-812 529-600 (653)
349 COG1340 Uncharacterized archae 51.1 2.2E+02 0.0048 32.1 12.4 39 749-787 41-79 (294)
350 KOG0355 DNA topoisomerase type 51.1 25 0.00055 43.8 5.7 49 154-205 55-103 (842)
351 KOG0996 Structural maintenance 51.0 1.1E+02 0.0025 39.8 11.3 26 187-214 109-136 (1293)
352 COG5185 HEC1 Protein involved 50.9 60 0.0013 38.5 8.3 55 745-799 486-544 (622)
353 TIGR02449 conserved hypothetic 50.0 39 0.00085 30.0 5.2 40 723-769 16-55 (65)
354 PF09728 Taxilin: Myosin-like 49.8 2.6E+02 0.0055 31.4 12.8 38 724-761 131-174 (309)
355 PRK14158 heat shock protein Gr 49.5 1.1E+02 0.0024 32.2 9.4 86 723-811 49-136 (194)
356 KOG1760 Molecular chaperone Pr 49.5 1.5E+02 0.0032 29.7 9.5 77 736-812 27-119 (131)
357 PRK13453 F0F1 ATP synthase sub 49.5 2.6E+02 0.0057 28.4 11.9 30 749-778 63-92 (173)
358 PF06818 Fez1: Fez1; InterPro 49.3 1.8E+02 0.0039 31.1 10.9 38 777-814 69-106 (202)
359 PRK06568 F0F1 ATP synthase sub 49.2 2.8E+02 0.006 28.3 11.9 46 732-777 32-77 (154)
360 KOG3119 Basic region leucine z 49.2 65 0.0014 35.2 8.0 43 731-776 193-235 (269)
361 TIGR03017 EpsF chain length de 49.1 2E+02 0.0042 32.8 12.1 28 787-814 341-368 (444)
362 CHL00094 dnaK heat shock prote 49.1 1.1E+02 0.0024 36.9 10.6 63 749-811 529-597 (621)
363 PRK11519 tyrosine kinase; Prov 49.0 79 0.0017 38.8 9.5 30 722-751 268-297 (719)
364 PF15070 GOLGA2L5: Putative go 48.9 1.6E+02 0.0035 36.1 11.9 36 749-784 160-195 (617)
365 PRK14155 heat shock protein Gr 48.9 2.2E+02 0.0047 30.4 11.5 94 716-812 15-114 (208)
366 KOG0996 Structural maintenance 48.8 1.2E+02 0.0026 39.6 11.0 10 157-166 144-153 (1293)
367 PHA02675 ORF104 fusion protein 48.8 64 0.0014 30.2 6.5 43 731-773 33-75 (90)
368 PF07246 Phlebovirus_NSM: Phle 48.7 1.3E+02 0.0029 33.2 10.1 19 523-541 40-58 (264)
369 PF14915 CCDC144C: CCDC144C pr 48.5 2.7E+02 0.0059 31.5 12.5 48 771-818 254-301 (305)
370 PF06156 DUF972: Protein of un 48.2 86 0.0019 30.1 7.7 50 749-802 8-57 (107)
371 TIGR01005 eps_transp_fam exopo 48.1 78 0.0017 38.7 9.3 36 788-823 376-414 (754)
372 KOG4674 Uncharacterized conser 47.9 1.7E+02 0.0036 40.0 12.5 66 749-814 798-863 (1822)
373 PRK13460 F0F1 ATP synthase sub 47.8 3.1E+02 0.0068 27.7 12.4 52 732-783 44-95 (173)
374 PRK13169 DNA replication intia 47.6 81 0.0017 30.6 7.4 48 749-800 8-55 (110)
375 PF08687 ASD2: Apx/Shroom doma 47.5 2.7E+02 0.0059 30.9 12.3 51 730-780 156-218 (264)
376 COG4477 EzrA Negative regulato 47.5 1.3E+02 0.0028 36.3 10.4 37 751-787 377-417 (570)
377 cd07627 BAR_Vps5p The Bin/Amph 47.4 1.2E+02 0.0027 31.6 9.5 41 749-789 143-183 (216)
378 PF14712 Snapin_Pallidin: Snap 47.2 1.7E+02 0.0038 26.3 9.2 31 755-785 13-43 (92)
379 PF06657 Cep57_MT_bd: Centroso 47.1 59 0.0013 29.5 6.1 58 718-775 14-76 (79)
380 COG1340 Uncharacterized archae 47.0 2.9E+02 0.0062 31.2 12.4 67 749-815 27-96 (294)
381 PRK13454 F0F1 ATP synthase sub 46.8 3E+02 0.0066 28.2 11.9 17 758-774 85-101 (181)
382 PF09177 Syntaxin-6_N: Syntaxi 46.6 74 0.0016 29.3 6.9 54 744-798 40-94 (97)
383 KOG0995 Centromere-associated 46.6 2.6E+02 0.0057 34.0 12.8 92 721-812 280-384 (581)
384 PF09731 Mitofilin: Mitochondr 46.4 2.7E+02 0.0059 33.2 13.1 32 783-814 366-397 (582)
385 KOG0992 Uncharacterized conser 46.3 1.9E+02 0.0041 34.8 11.4 29 720-748 196-224 (613)
386 KOG0241 Kinesin-like protein [ 46.3 34 0.00073 43.5 5.7 44 722-771 365-408 (1714)
387 PF05837 CENP-H: Centromere pr 46.1 2.6E+02 0.0056 26.6 10.5 45 722-766 4-48 (106)
388 PF09403 FadA: Adhesion protei 45.8 1E+02 0.0023 30.5 8.1 14 791-804 92-105 (126)
389 PHA00728 hypothetical protein 45.6 16 0.00035 36.0 2.5 26 721-746 5-30 (151)
390 PRK14474 F0F1 ATP synthase sub 45.6 3.2E+02 0.0069 29.6 12.4 30 749-778 50-79 (250)
391 PRK14140 heat shock protein Gr 45.2 3.1E+02 0.0068 29.0 11.9 85 723-812 46-135 (191)
392 PRK09174 F0F1 ATP synthase sub 45.1 3.7E+02 0.008 28.4 12.5 34 778-811 150-184 (204)
393 PRK14141 heat shock protein Gr 45.0 1.2E+02 0.0026 32.4 9.0 42 754-795 36-77 (209)
394 COG4477 EzrA Negative regulato 44.9 1.5E+02 0.0032 35.9 10.3 88 722-813 317-407 (570)
395 PF15463 ECM11: Extracellular 44.8 2E+02 0.0043 28.5 9.9 60 749-808 76-135 (139)
396 KOG4809 Rab6 GTPase-interactin 44.8 1.2E+02 0.0025 36.8 9.5 29 720-748 256-284 (654)
397 PRK10361 DNA recombination pro 44.7 3E+02 0.0064 33.0 12.8 38 749-786 60-97 (475)
398 PF10458 Val_tRNA-synt_C: Valy 44.7 69 0.0015 27.7 6.0 48 721-768 4-65 (66)
399 PF09787 Golgin_A5: Golgin sub 44.6 2E+02 0.0043 34.2 11.6 76 723-798 118-204 (511)
400 PF06428 Sec2p: GDP/GTP exchan 44.5 25 0.00054 33.4 3.5 25 791-815 54-78 (100)
401 PF05701 WEMBL: Weak chloropla 44.3 2.2E+02 0.0047 34.0 11.9 80 722-816 173-263 (522)
402 KOG2701 Uncharacterized conser 44.3 2.6E+02 0.0056 34.3 12.3 86 736-821 307-400 (608)
403 PRK09841 cryptic autophosphory 44.2 2.4E+02 0.0053 34.8 12.7 56 722-777 268-332 (726)
404 TIGR02338 gimC_beta prefoldin, 44.1 2.3E+02 0.005 26.7 9.9 33 776-808 76-108 (110)
405 COG3852 NtrB Signal transducti 44.1 35 0.00075 38.7 5.0 73 153-231 242-325 (363)
406 PF06810 Phage_GP20: Phage min 43.8 1.4E+02 0.0031 30.2 8.9 18 753-770 31-48 (155)
407 PRK11546 zraP zinc resistance 43.5 88 0.0019 31.7 7.3 64 720-790 53-116 (143)
408 COG1382 GimC Prefoldin, chaper 43.3 3.4E+02 0.0074 26.9 11.9 36 735-770 13-48 (119)
409 PRK14154 heat shock protein Gr 43.3 1.5E+02 0.0032 31.8 9.2 58 720-780 58-116 (208)
410 TIGR02971 heterocyst_DevB ABC 43.3 4E+02 0.0086 29.0 12.9 9 746-754 118-126 (327)
411 KOG0249 LAR-interacting protei 42.7 1.3E+02 0.0028 37.6 9.6 32 712-745 98-129 (916)
412 PF05377 FlaC_arch: Flagella a 42.4 23 0.00049 30.6 2.6 28 718-745 11-38 (55)
413 PF08657 DASH_Spc34: DASH comp 42.4 82 0.0018 34.5 7.4 44 731-774 176-219 (259)
414 KOG2185 Predicted RNA-processi 42.3 55 0.0012 38.1 6.3 58 719-776 411-471 (486)
415 KOG0971 Microtubule-associated 42.3 2.4E+02 0.0052 36.3 11.9 46 720-766 447-492 (1243)
416 PF02841 GBP_C: Guanylate-bind 42.2 3.4E+02 0.0073 29.8 12.2 23 511-533 95-117 (297)
417 KOG0993 Rab5 GTPase effector R 42.2 90 0.002 36.5 7.9 63 724-807 117-181 (542)
418 PF05565 Sipho_Gp157: Siphovir 42.1 2.8E+02 0.0062 28.0 10.8 95 725-822 5-101 (162)
419 TIGR00219 mreC rod shape-deter 42.1 38 0.00083 37.1 5.0 24 722-745 67-90 (283)
420 PF10779 XhlA: Haemolysin XhlA 42.1 1.1E+02 0.0023 27.0 6.8 39 732-770 3-41 (71)
421 TIGR01144 ATP_synt_b ATP synth 41.6 3.4E+02 0.0074 26.3 12.4 44 734-777 25-68 (147)
422 PF14197 Cep57_CLD_2: Centroso 41.6 2.1E+02 0.0046 25.5 8.6 21 795-815 40-60 (69)
423 KOG0240 Kinesin (SMY1 subfamil 41.4 2.6E+02 0.0056 34.2 11.6 101 722-823 404-512 (607)
424 PTZ00009 heat shock 70 kDa pro 41.3 2.3E+02 0.005 34.6 11.7 65 749-813 539-614 (653)
425 PRK14139 heat shock protein Gr 41.1 2.6E+02 0.0057 29.3 10.6 88 720-810 38-126 (185)
426 COG0419 SbcC ATPase involved i 40.7 3E+02 0.0065 34.9 12.9 20 188-209 27-46 (908)
427 PRK13428 F0F1 ATP synthase sub 40.7 2.8E+02 0.0061 32.5 11.9 13 764-776 61-73 (445)
428 KOG0447 Dynamin-like GTP bindi 40.7 55 0.0012 39.7 6.1 55 727-782 225-291 (980)
429 TIGR00019 prfA peptide chain r 40.7 2.1E+02 0.0045 33.0 10.5 18 764-781 54-71 (360)
430 PF15290 Syntaphilin: Golgi-lo 40.7 1.5E+02 0.0033 33.2 9.1 21 749-769 108-130 (305)
431 KOG2991 Splicing regulator [RN 40.6 3.2E+02 0.0068 30.6 11.3 105 711-815 167-308 (330)
432 TIGR02338 gimC_beta prefoldin, 40.5 3.2E+02 0.007 25.8 12.0 38 733-770 8-45 (110)
433 PRK14151 heat shock protein Gr 40.4 1.4E+02 0.0031 30.9 8.5 92 718-812 24-119 (176)
434 PF01442 Apolipoprotein: Apoli 40.2 3.5E+02 0.0076 26.1 12.2 7 792-798 159-165 (202)
435 PF01576 Myosin_tail_1: Myosin 40.2 9.4 0.0002 47.7 0.0 83 712-800 25-114 (859)
436 PF06936 Selenoprotein_S: Sele 40.0 1.6E+02 0.0034 31.1 8.8 54 752-818 79-132 (190)
437 PF05010 TACC: Transforming ac 40.0 4.8E+02 0.01 27.9 12.4 25 719-743 7-38 (207)
438 KOG0980 Actin-binding protein 39.9 3.3E+02 0.0071 34.9 12.5 15 382-396 156-170 (980)
439 TIGR00634 recN DNA repair prot 39.8 3E+02 0.0066 32.9 12.2 12 401-412 106-117 (563)
440 KOG0978 E3 ubiquitin ligase in 39.6 2.3E+02 0.005 35.3 11.2 51 773-823 593-650 (698)
441 PF08397 IMD: IRSp53/MIM homol 39.5 1.1E+02 0.0025 32.0 7.8 35 754-788 143-178 (219)
442 cd04779 HTH_MerR-like_sg4 Heli 39.4 1.6E+02 0.0034 29.1 8.3 83 722-808 48-131 (134)
443 KOG0994 Extracellular matrix g 39.4 1.7E+02 0.0037 38.4 10.2 28 756-784 1654-1681(1758)
444 TIGR01005 eps_transp_fam exopo 39.3 2.6E+02 0.0056 34.4 11.8 16 753-768 356-371 (754)
445 PRK14155 heat shock protein Gr 39.3 1.7E+02 0.0037 31.2 9.0 12 731-742 16-27 (208)
446 PF07160 DUF1395: Protein of u 39.1 73 0.0016 34.4 6.4 53 716-768 17-69 (243)
447 cd00632 Prefoldin_beta Prefold 39.1 3.3E+02 0.0071 25.4 12.0 77 736-812 7-101 (105)
448 PRK09173 F0F1 ATP synthase sub 39.1 4E+02 0.0086 26.4 12.4 47 733-779 31-77 (159)
449 TIGR00570 cdk7 CDK-activating 39.0 2.6E+02 0.0055 31.7 10.7 25 733-757 118-142 (309)
450 PF03961 DUF342: Protein of un 38.9 1.2E+02 0.0025 35.2 8.4 28 771-798 372-399 (451)
451 PF11559 ADIP: Afadin- and alp 38.7 3.9E+02 0.0085 26.2 13.2 69 725-793 45-117 (151)
452 PF02994 Transposase_22: L1 tr 38.7 1E+02 0.0022 35.2 7.8 12 723-734 107-118 (370)
453 TIGR00414 serS seryl-tRNA synt 38.7 1.7E+02 0.0038 33.8 9.8 26 789-814 84-109 (418)
454 KOG0946 ER-Golgi vesicle-tethe 38.5 2.2E+02 0.0047 36.2 10.7 19 516-534 494-513 (970)
455 COG4942 Membrane-bound metallo 38.5 3.8E+02 0.0083 31.6 12.3 24 753-776 214-237 (420)
456 COG0711 AtpF F0F1-type ATP syn 38.4 4.3E+02 0.0094 26.7 12.3 37 733-769 35-71 (161)
457 PRK14151 heat shock protein Gr 38.4 3.6E+02 0.0078 28.0 11.0 46 750-795 21-66 (176)
458 PRK03947 prefoldin subunit alp 38.4 3.8E+02 0.0083 26.0 11.9 38 776-813 96-133 (140)
459 PF09744 Jnk-SapK_ap_N: JNK_SA 38.3 3.3E+02 0.0072 27.9 10.6 94 719-812 62-155 (158)
460 KOG1937 Uncharacterized conser 38.3 1.7E+02 0.0037 34.8 9.4 23 776-798 354-376 (521)
461 PF15070 GOLGA2L5: Putative go 38.2 1.7E+02 0.0037 35.9 9.9 21 751-771 117-137 (617)
462 PF14772 NYD-SP28: Sperm tail 38.1 3.4E+02 0.0073 25.3 10.0 42 749-790 51-92 (104)
463 PF13166 AAA_13: AAA domain 38.1 3.8E+02 0.0082 32.5 12.9 19 512-530 280-298 (712)
464 PF09738 DUF2051: Double stran 38.0 2.7E+02 0.0058 31.4 10.7 64 722-785 78-155 (302)
465 PF06273 eIF-4B: Plant specifi 37.9 42 0.00091 39.7 4.6 51 723-773 368-420 (492)
466 PTZ00400 DnaK-type molecular c 37.8 2.2E+02 0.0047 35.0 10.8 64 749-812 568-637 (663)
467 PF07139 DUF1387: Protein of u 37.8 1.4E+02 0.003 33.6 8.4 50 721-770 182-232 (302)
468 PF01486 K-box: K-box region; 37.7 87 0.0019 28.9 5.9 46 723-768 21-68 (100)
469 COG4564 Signal transduction hi 37.7 47 0.001 38.0 4.8 76 155-248 358-438 (459)
470 KOG4809 Rab6 GTPase-interactin 37.7 4.3E+02 0.0094 32.3 12.6 96 723-818 333-458 (654)
471 PLN02939 transferase, transfer 37.4 2.6E+02 0.0057 36.2 11.6 25 720-744 225-249 (977)
472 PRK06569 F0F1 ATP synthase sub 37.3 4.2E+02 0.0092 27.2 11.1 83 737-819 39-124 (155)
473 PF05103 DivIVA: DivIVA protei 37.3 13 0.00027 35.2 0.4 45 720-764 31-75 (131)
474 TIGR01554 major_cap_HK97 phage 37.1 1.2E+02 0.0025 34.2 7.9 45 723-767 8-52 (378)
475 PRK14147 heat shock protein Gr 37.1 2E+02 0.0043 29.7 8.9 59 718-779 22-81 (172)
476 TIGR01000 bacteriocin_acc bact 36.9 2.5E+02 0.0053 32.6 10.6 101 719-820 177-322 (457)
477 cd07647 F-BAR_PSTPIP The F-BAR 36.8 4.2E+02 0.0091 28.1 11.6 17 788-804 153-169 (239)
478 PF02403 Seryl_tRNA_N: Seryl-t 36.6 1.7E+02 0.0036 27.2 7.6 65 749-814 29-93 (108)
479 PRK14162 heat shock protein Gr 36.5 2.3E+02 0.0049 30.0 9.3 87 720-811 45-136 (194)
480 COG1842 PspA Phage shock prote 36.5 3.2E+02 0.007 29.5 10.6 44 724-767 27-70 (225)
481 KOG2891 Surface glycoprotein [ 36.4 2.4E+02 0.0053 31.7 9.8 75 735-815 288-391 (445)
482 PRK12705 hypothetical protein; 36.3 3.5E+02 0.0076 32.6 11.9 8 764-771 96-103 (508)
483 TIGR03752 conj_TIGR03752 integ 36.2 1.8E+02 0.004 34.6 9.4 59 716-775 58-121 (472)
484 PF04740 LXG: LXG domain of WX 36.2 4.4E+02 0.0095 26.8 11.2 25 791-815 141-165 (204)
485 PF02346 Vac_Fusion: Chordopox 36.1 1.1E+02 0.0023 26.8 5.6 41 731-771 4-44 (57)
486 PRK14475 F0F1 ATP synthase sub 36.0 4.7E+02 0.01 26.3 12.3 50 731-780 37-86 (167)
487 PF05622 HOOK: HOOK protein; 35.9 12 0.00026 45.6 0.0 54 720-773 458-519 (713)
488 PRK00591 prfA peptide chain re 35.8 3E+02 0.0065 31.7 10.8 18 764-781 53-70 (359)
489 PRK10698 phage shock protein P 35.8 5.4E+02 0.012 27.5 12.1 17 749-765 52-68 (222)
490 PRK14139 heat shock protein Gr 35.8 2.4E+02 0.0051 29.7 9.3 34 730-763 34-67 (185)
491 PF03904 DUF334: Domain of unk 35.7 3.2E+02 0.0069 29.8 10.3 46 768-813 91-138 (230)
492 PRK14147 heat shock protein Gr 35.7 3.7E+02 0.0081 27.8 10.6 90 718-810 22-112 (172)
493 TIGR01730 RND_mfp RND family e 35.7 1.9E+02 0.0041 30.7 8.9 68 752-820 67-140 (322)
494 KOG4438 Centromere-associated 35.6 2.8E+02 0.0061 32.8 10.5 95 718-812 142-236 (446)
495 TIGR02231 conserved hypothetic 35.5 3.5E+02 0.0076 31.9 11.8 82 735-816 71-166 (525)
496 PF04420 CHD5: CHD5-like prote 35.4 44 0.00096 33.7 3.9 49 724-774 43-91 (161)
497 KOG4787 Uncharacterized conser 35.4 3.2E+02 0.007 33.6 11.1 97 719-815 344-486 (852)
498 cd00890 Prefoldin Prefoldin is 35.4 3.8E+02 0.0082 25.1 11.9 87 728-814 2-127 (129)
499 PRK14144 heat shock protein Gr 35.3 1.7E+02 0.0036 31.2 8.2 85 727-815 21-109 (199)
500 TIGR00763 lon ATP-dependent pr 35.3 2.1E+02 0.0046 35.6 10.4 87 729-815 183-280 (775)
No 1
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3e-70 Score=628.68 Aligned_cols=651 Identities=40% Similarity=0.584 Sum_probs=486.2
Q ss_pred cccccccCCCcCCCCCCCCCCCCCCCCccccccchhhhhhhcccCCCCCCCCCccccCCCccccccCchhhccccccccc
Q 003366 73 DLEVVLPVGFLEPLPAPERLPAAAGNDKAVSVGLQSCKQFWKAGDYEGAPSGGWEFSTGGMDHVRVHPKFLHSNATSHKW 152 (826)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fwkag~y~~~~~~~~~~~~~~l~~~~v~p~fLhSNSTSH~w 152 (826)
+-+|++|---+.|-++++.+ .. .+.++.+-.|+||||||+|..++........++.+|+++||+|||+|+|+|+|
T Consensus 72 ~~~vvvP~~t~~~~~~~~~~----~k-~~~~l~~~~c~sfwKag~~~~a~~~~~~~~~G~~~~iivhpkflhsnatshk~ 146 (775)
T KOG1845|consen 72 DDAVVVPCPTFNPRTREIVT----EK-FAFSLEAIYCRSFWKAGDYLLAELDVIIGKSGGTLHIIVHPKFLHSNATSHKW 146 (775)
T ss_pred cccceecccccccccccccc----cc-cccccchhhhcCcccccchhcccccceeccCCceeEEEEehhhhcCCCccccc
Confidence 34456665555554444333 22 25577888999999999999999988888889999999999999999999999
Q ss_pred HHHHHHHHhccchhhhhCCCceEEEEEEEccCCC-ceEEEEE-----ECCCCCCHHHHhhhccccccccccCCcccCccc
Q 003366 153 ALGAFAELLDNSLDEVCNGATYSNIDMLINRKDG-SRMLLIE-----DNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYG 226 (826)
Q Consensus 153 pFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g-~~~L~I~-----DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG 226 (826)
.++|+|||||||+|.+.++|++++|+.+....+. .+.++|. |||.||.++-+..||.+|+++|......+|+||
T Consensus 147 a~~a~aeLldnalDEi~~~~tf~~vd~I~p~~d~~i~a~~v~~~~~s~~gg~~~~~~i~~~m~l~~~~k~e~~~tv~q~~ 226 (775)
T KOG1845|consen 147 AKGAIAELLDNALDEITNGATFVRVDYINPVMDIFIRALVVQLKRISDDGGGMKPEVIRKCMSLGYSSKKEANSTVGQYG 226 (775)
T ss_pred ccChhhhhccccccccccccceEEeeeecccccccceeEEeeccceeccccccCHHHHHHHHHhhhhhhhhhhhhhhhhc
Confidence 9999999999999999999999999887654444 5677777 679999999999999999999986578999999
Q ss_pred CcccccccccCCeEEEEeeecCCCCCCCeeeeeccceeecccCCCCceeeee----eeeccccchhhhhhccchhhhhHh
Q 003366 227 NGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRSTGKEDIVVPM----LDYEGSQQEWKKIIRSSLDDWNRN 302 (826)
Q Consensus 227 ~GfKsAsmrLG~~v~V~SK~~g~dg~~~t~SvgLLS~Tfl~~~~~ddIiVPm----~~wdl~~~~~~~ii~~~~~dw~~n 302 (826)
+||+++.|+||.+++|++|..+..|...++++|||||+||+.++.+|++||| ..++...+.|..+++.+..+|..|
T Consensus 227 ~gfktst~rlGa~~i~~~R~~~~~~~kstqsiglls~tfL~~t~~~d~iv~~~~i~~~~e~~~~~~~~i~~~s~~~~~~n 306 (775)
T KOG1845|consen 227 NGFKTSTMRLGADAIVFSRCESRRGLKSTQSIGLLSYTFLRKTGKRDFIVPMRLIKMDYEKSDQLWQGILYKSGVDWAVN 306 (775)
T ss_pred cccccchhhhccceeEeehhhhhccCCcceeEEEEEEeeeccccCCceeEecchhhhhhhcccccccceeecccccccee
Confidence 9999999999999999999888888899999999999999999999999999 888877778888888888999999
Q ss_pred HHH-----hhhcCCCCCHHHHHHH---------------HhhccCCceEEEEEcc--ccccCCcccccCCCCccceeccc
Q 003366 303 VET-----IVQWSPFSSEADLLHQ---------------FNLMKDHGTRIIIYNL--WEDDQGLLELDFDSDKHDIQLRG 360 (826)
Q Consensus 303 L~i-----IlkySPF~tE~eLl~Q---------------fd~Ig~~GTrIII~NL--~~~~~G~lELDFdtD~~DI~i~g 360 (826)
+.+ +++|+||.++.+++.| |+.+..+||.||+||+ |..+.|.+|+||+.++++|..
T Consensus 307 ~~i~~~~~~L~w~p~~~~~~~l~q~~v~~~~~~~ef~~~~~~~~~~g~~~I~Y~~~~~~~~~g~~e~df~l~~~~i~~-- 384 (775)
T KOG1845|consen 307 LEIEVTERFLKWSPYSHLLDLLGQNSVQYSKDFPEFGHQFNIMNKPGTDVIIYNLRRWKGDEGILELDFDLDPHVIPW-- 384 (775)
T ss_pred eeeHHHHHHhhcCccccHHHHhhhhhhhhccccchhcchhhhccCCCceeeeechhhhcccccceeeccccCcccccc--
Confidence 998 9999999999999999 8888999999999999 999999999999999999862
Q ss_pred CcchhhhhhhhccCCCCcchhhhhhhHHHHHHHHhhcCCCceEEEEeCeeecccccccccccccceEeeccCCCCCCCCc
Q 003366 361 VNRDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDMMLSKKVTYRPQPGASGIPTD 440 (826)
Q Consensus 361 ~~~d~k~~q~a~~~p~~~h~~~~~~SLRaYLSILYLr~pPrmrIiLrGkkVe~~ni~~dL~~~e~v~YrPq~~~~~lP~~ 440 (826)
.+.++++.|.+|||+..+++|+++++|+.+.|+.+..+++..+.+.|+|+....+.+ .
T Consensus 385 ---------------------~~~~~~~s~~sil~~~~~~~~~~v~~~~~~~h~sv~~~q~~~~~~~~~p~r~~~~~~-~ 442 (775)
T KOG1845|consen 385 ---------------------TYCHSHLSEASILLLTRRLRFKSVLRGKDVEHHSVINYQVQTEEILYQPQRAPADGK-Q 442 (775)
T ss_pred ---------------------cchhhhhhcccccchhccccchhccccccchhhhHHHHHHHHHHHhcccccccCCcc-c
Confidence 235788999999999999999999999999999999999999999999994432211 1
Q ss_pred ccceEEEEEeeecCcccccccccceEEecCccch----hhhhcccCCCCCCcceeeeeecCccccCCccccccchHHHHH
Q 003366 441 LHMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIK----PFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLAR 516 (826)
Q Consensus 441 ~n~~v~itiGf~k~a~~~~diqGf~VYhkNRLIk----py~rVg~~~~s~GrGVIGVlEanflePtHNKQdFe~t~l~~r 516 (826)
..+.+....||.+.+++++++++|+|||++|||+ ||||.++..++.++++++++.+||++|+|++|+|+.+-..++
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~nV~~~~~lie~~~~~~~k~~n~~~s~~~~~~~il~~n~~~~a~~~~~v~~~~v~a~ 522 (775)
T KOG1845|consen 443 RLIKLSPKPGFVKDAPRPIDVQQFNVSHGPRLIEHGCRPFVKIDNATGSLGQAVIPILVGNFVETAPDSQGVEKTIVLAS 522 (775)
T ss_pred hhhcccCCCCcccccCCCCCccCCccccCCcchhhcccceeeecCCCccccccccceecccccccCCCcccccccccccc
Confidence 1344556789999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccccccccCCccccccc--ccccccCCCCCCCCCcccCCCCCCCcccccccccccccCCCCCCc
Q 003366 517 LEARLIQMQKDYWNNNCHEIGYAPRRYKKYIKD--SYDREISSKKSYPSRHKITDSSHSDKHQLHSNQRWEGKDSKRLPE 594 (826)
Q Consensus 517 Le~~L~qm~~~YW~~~~~~iGy~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (826)
++.++.++++.||...|++|+|.+....+..+. ++.++..| +.. ..+ ....-|+ .+.
T Consensus 523 ~es~~~~~~~~~~~~~~~~i~~~~~q~~~~~~~~~~~~Ke~~~--~~~-----~~~-~~~~~~~-------------~~~ 581 (775)
T KOG1845|consen 523 SESRDKQSLNTYEEKKCLRIDEAGRQLQKERESTTTVVKEEKP--ENN-----HLS-SSKRTQR-------------RKS 581 (775)
T ss_pred chhhhhhcccccccccccccCccchhhhhhhcccceeeccccc--ccc-----hhc-chhcccc-------------ccc
Confidence 999999999999999999999998776555533 22333333 321 000 0000000 000
Q ss_pred ccCCCCCCCcccCcccccccCCccccCCccccCCCCCCCCCCCccccchhhccccCCCCcccccccccccCCCCCCCCCC
Q 003366 595 ASNYGDRKGHESSKGKYKMKTPVKYREGASVSEPLSPSAEDASDDDMHVMVTARGANGSSQKILAAEKSFGKDGLHRTHP 674 (826)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (826)
. ........++. +. ++...|.+ +..+|+.-. .+....+..-.+..+. ..++.--
T Consensus 582 ~---------~~~~~~~~~~~--~~---~~~~~~~~--------~~~~v~sq~---~~~~~e~e~~k~~~~~-~~~a~~~ 635 (775)
T KOG1845|consen 582 T---------GRAISVAVEKF--NL---RSGPNGRG--------QIDMVESQE---TPLLKEVERLKKKRRR-AALALEV 635 (775)
T ss_pred c---------ccccccchhhh--cc---ccccCCcC--------Ccccccccc---chhhhHHHHhhhhhhh-hhhhhhh
Confidence 0 00000000000 00 00001111 000000000 0000000000000000 0000000
Q ss_pred CcccccccccccCCCCCCCCCCCCCCCCCCccccCCCCcccccccchhhhhhhhhhhHHHHHHHHhHH-------hHHHH
Q 003366 675 SACLVDSESQQDGASGGSSVRPFMPSQSKGSEVNYPEHFLSDCSLGANLGQLKQENHELKKRLEKKEG-------ELQEE 747 (826)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~-------~~~~e 747 (826)
.+..-+ ..|.||+.---++.. .++-.-..+ ...+ +.+-+|++.+.+.-+++..... ++.++
T Consensus 636 ~~~~~~-~~~~~~~~~~~~e~~---~~~~~~~~~-----~~~~---~~~~~l~~~~~~~l~~~~~~~~t~~~q~~~~n~~ 703 (775)
T KOG1845|consen 636 QSSKNE-EEQSDDDEDSLNEVR---RKSAKLKSE-----QKQK---KTLVELEETRKKWLRSMLNQSLTAGEQLKSLNQQ 703 (775)
T ss_pred ccccch-hhhhccchhhhhHHh---hhccccchh-----hccc---HHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccc
Confidence 011111 125555554212111 111000001 1111 3477777777777776654333 24555
Q ss_pred HHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003366 748 RERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIK 812 (826)
Q Consensus 748 ~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~ 812 (826)
.+..+.|+.++++...+|..+.+.|+++.+.|..||.+|+.||..+|.||..+ .+.++++..+.
T Consensus 704 ~~~~~~~~~~~k~~~n~l~~~~~~~~s~~~~~~~~~~~~~~e~~l~~~k~~~~-~~~~~~~~~~~ 767 (775)
T KOG1845|consen 704 EDFDKTLEVELKESRNKLQNLRNKLQSLADMFIQERADRDKEEDLQRFKLPVS-GTLEKVLKDIE 767 (775)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHhcchhhhhHHHhhhhhhhhhhhcccch-hhHHHHhhhhH
Confidence 58899999999999999999999999999999999999999999999999754 45556655544
No 2
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=2.6e-27 Score=274.52 Aligned_cols=287 Identities=24% Similarity=0.320 Sum_probs=220.6
Q ss_pred EEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCcccccccccCCeEEEEeeecCCCCCCCeeeeeccceeeccc
Q 003366 189 MLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGLLSYTFLRS 268 (826)
Q Consensus 189 ~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfKsAsmrLG~~v~V~SK~~g~dg~~~t~SvgLLS~Tfl~~ 268 (826)
||++.|||.||+++++..+.+|+.. ...||+||+|+|+++|++|++++++|+..+ +++++++|+||++.
T Consensus 1 ~l~~~Ddg~Gms~d~a~~~~~f~~~-----~~~ig~ygnG~ksgs~r~gkd~~~~tk~~~------~~s~~~~sqt~~e~ 69 (775)
T KOG1845|consen 1 MLCFLDDGLGMSPDEAPKAINFAVG-----LYGIGDYGNGLKSGSMRIGKDFILFTKKES------TMSCLFLSQTFHES 69 (775)
T ss_pred CcccccCCCCcCchhhhhhhhhccc-----ccccccccCcccccccccCcccceeecccc------ccceeeeecccccc
Confidence 5899999999999999999998443 347999999999999999999999999764 69999999999999
Q ss_pred CCCCceeeeeeeeccccchhhhhhccchhhhhHhHHHhhhcCCCCCHHHHHHHHhhc-cCCc-eEEEEEccccccCCccc
Q 003366 269 TGKEDIVVPMLDYEGSQQEWKKIIRSSLDDWNRNVETIVQWSPFSSEADLLHQFNLM-KDHG-TRIIIYNLWEDDQGLLE 346 (826)
Q Consensus 269 ~~~ddIiVPm~~wdl~~~~~~~ii~~~~~dw~~nL~iIlkySPF~tE~eLl~Qfd~I-g~~G-TrIII~NL~~~~~G~lE 346 (826)
+..+.++||+++|+...+. ++ .+.+..+|++|+.+|||++++.++.++++| +..| |.+||+|+++...|.++
T Consensus 70 ~~~~~vvvP~~t~~~~~~~---~~---~~k~~~~l~~~~c~sfwKag~~~~a~~~~~~~~~G~~~~iivhpkflhsnats 143 (775)
T KOG1845|consen 70 EADDAVVVPCPTFNPRTRE---IV---TEKFAFSLEAIYCRSFWKAGDYLLAELDVIIGKSGGTLHIIVHPKFLHSNATS 143 (775)
T ss_pred cccccceeccccccccccc---cc---ccccccccchhhhcCcccccchhcccccceeccCCceeEEEEehhhhcCCCcc
Confidence 9999999999999977642 22 266788899999999999999999999998 5655 99999999999999999
Q ss_pred ccCCCCccceecccCcchhhhhhhhccCCCCcchhhhhhhHHHHHHHHhhcCCCceEEEEeCeeeccccccccc--cccc
Q 003366 347 LDFDSDKHDIQLRGVNRDEQNIKMAQHYPNSRHFLTYRHSLRSYASILYLRLPPGFRIIIRGKDVEHHNIVNDM--MLSK 424 (826)
Q Consensus 347 LDFdtD~~DI~i~g~~~d~k~~q~a~~~p~~~h~~~~~~SLRaYLSILYLr~pPrmrIiLrGkkVe~~ni~~dL--~~~e 424 (826)
++|..|+.||++.++. |+ ++ .+. .|+.++|+. |+|.|++++..|++.++..++ |.++
T Consensus 144 hk~a~~a~aeLldnal-DE--------i~-------~~~---tf~~vd~I~--p~~d~~i~a~~v~~~~~s~~gg~~~~~ 202 (775)
T KOG1845|consen 144 HKWAKGAIAELLDNAL-DE--------IT-------NGA---TFVRVDYIN--PVMDIFIRALVVQLKRISDDGGGMKPE 202 (775)
T ss_pred cccccChhhhhccccc-cc--------cc-------ccc---ceEEeeeec--ccccccceeEEeeccceeccccccCHH
Confidence 9999999999996543 21 12 122 458999996 999999999999998866663 2222
Q ss_pred ceEeeccCCCCCCCCcc-cceEEEEEeeecCcccccccccceEEecCccchhhhhcccCCCCCCcceeeeeecCccccCC
Q 003366 425 KVTYRPQPGASGIPTDL-HMAVDVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAH 503 (826)
Q Consensus 425 ~v~YrPq~~~~~lP~~~-n~~v~itiGf~k~a~~~~diqGf~VYhkNRLIkpy~rVg~~~~s~GrGVIGVlEanflePtH 503 (826)
.+.+ ....+-.-.... ..+.+...||.+.... .|..+|+-+|. . ...+.++.+.||+|..+||++||
T Consensus 203 ~i~~-~m~l~~~~k~e~~~tv~q~~~gfktst~r----lGa~~i~~~R~--~-----~~~~~kstqsiglls~tfL~~t~ 270 (775)
T KOG1845|consen 203 VIRK-CMSLGYSSKKEANSTVGQYGNGFKTSTMR----LGADAIVFSRC--E-----SRRGLKSTQSIGLLSYTFLRKTG 270 (775)
T ss_pred HHHH-HHHhhhhhhhhhhhhhhhhccccccchhh----hccceeEeehh--h-----hhccCCcceeEEEEEEeeecccc
Confidence 1111 110000000011 1233556777776653 59999999997 1 23467888999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHh
Q 003366 504 DKQGFERTTVLARLEARLIQMQKDYW 529 (826)
Q Consensus 504 NKQdFe~t~l~~rLe~~L~qm~~~YW 529 (826)
|+||-+.. ++.....+.-.+||
T Consensus 271 -~~d~iv~~---~~i~~~~e~~~~~~ 292 (775)
T KOG1845|consen 271 -KRDFIVPM---RLIKMDYEKSDQLW 292 (775)
T ss_pred -CCceeEec---chhhhhhhcccccc
Confidence 99999866 33333333444444
No 3
>PRK05218 heat shock protein 90; Provisional
Probab=99.72 E-value=2.2e-17 Score=191.05 Aligned_cols=114 Identities=27% Similarity=0.452 Sum_probs=88.8
Q ss_pred CCccccCCCccccccCchhhcccccccccHHHHHHHHhccchhhhhC-------------CCceEEEEEEEccCCCceEE
Q 003366 124 GGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRML 190 (826)
Q Consensus 124 ~~~~~~~~~l~~~~v~p~fLhSNSTSH~wpFgAIAELIDNAiDA~~~-------------gAt~V~Idi~~~~~~g~~~L 190 (826)
..||+++.++..+-+|.-| ++...| |+|||.||+||+.+ ++....|.+..+. +...|
T Consensus 6 ~~Fq~e~~~ll~ll~~~LY------s~~~v~--lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~--~~~~i 75 (613)
T PRK05218 6 GEFQAEVKQLLHLMIHSLY------SNKEIF--LRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDK--EARTL 75 (613)
T ss_pred eehhHhHHHHHHHHhhhhc------CCchHH--HHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcC--CCCeE
Confidence 4589999999999999888 666665 99999999999752 2334566665443 33469
Q ss_pred EEEECCCCCCHHHHhhh-ccccccccc-----------cCCcccCcccCcccccccccCCeEEEEeeecC
Q 003366 191 LIEDNGGGMNPDKMRHC-MSLGYSAKS-----------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 191 ~I~DNG~GMs~eeL~~~-LsfG~SsK~-----------~~~~~IGrfG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
.|.|||+||+.++|... +++|+|.+. .....||+||+||++++| +|.+|+|.||+.+
T Consensus 76 ~I~DnG~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~f~-va~~v~V~Sr~~~ 144 (613)
T PRK05218 76 TISDNGIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSAFM-VADKVTVITRSAG 144 (613)
T ss_pred EEEECCCCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhhhh-ccCEEEEEEcCCC
Confidence 99999999999999974 467776421 124679999999997655 8999999999865
No 4
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.68 E-value=1.3e-17 Score=158.45 Aligned_cols=92 Identities=37% Similarity=0.613 Sum_probs=78.5
Q ss_pred HHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhcccccccccc--CCcccCcccCcccc
Q 003366 154 LGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSK--AANTIGQYGNGFKT 231 (826)
Q Consensus 154 FgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~--~~~~IGrfG~GfKs 231 (826)
..||+|||+||+|| .|+.|.|.+.... .+...|.|.|||.||++++|..++.+|.+.+.. ....+|+||+|+|.
T Consensus 4 ~~al~ElI~Ns~DA---~a~~I~I~i~~~~-~~~~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G~G~k~ 79 (137)
T PF13589_consen 4 EDALRELIDNSIDA---GATNIKISIDEDK-KGERYIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFGIGLKL 79 (137)
T ss_dssp THHHHHHHHHHHHH---HHHHEEEEEEEET-TTTTEEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGTSGCGG
T ss_pred HHHHHHHHHHHHHc---cCCEEEEEEEcCC-CCCcEEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcceEHHH
Confidence 47999999999999 6888999987653 356799999999999999999999999998853 35789999999999
Q ss_pred cccccCCeEEEEeeecCC
Q 003366 232 STMRLGADVIVFSCCCGK 249 (826)
Q Consensus 232 AsmrLG~~v~V~SK~~g~ 249 (826)
|++.+|..+.|+|+..+.
T Consensus 80 A~~~~~~~~~v~S~~~~~ 97 (137)
T PF13589_consen 80 AIFSLGDRVEVISKTNGE 97 (137)
T ss_dssp GGGGTEEEEEEEEESTTS
T ss_pred HHHHhcCEEEEEEEECCC
Confidence 999999999999998764
No 5
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=6.4e-17 Score=185.19 Aligned_cols=132 Identities=26% Similarity=0.384 Sum_probs=105.4
Q ss_pred CCccccCCCccccccCchhhcccccccccHHHHHHHHhccchhhhhCC-------------CceEEEEEEEccCCCceEE
Q 003366 124 GGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNG-------------ATYSNIDMLINRKDGSRML 190 (826)
Q Consensus 124 ~~~~~~~~~l~~~~v~p~fLhSNSTSH~wpFgAIAELIDNAiDA~~~g-------------At~V~Idi~~~~~~g~~~L 190 (826)
..||+++++|.++.+|.-| |++.+| |+|||.||.||+.+- ...++|.+..++ .+..|
T Consensus 7 ~~Fq~ev~~ll~lmihSlY------SnKeIF--LRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk--~~kTL 76 (623)
T COG0326 7 RGFQAEVKQLLDLMIHSLY------SNKEIF--LRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDK--DNKTL 76 (623)
T ss_pred hhhhHHHHHHHHHHHHhcc------CCcHHH--HHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcc--cCCEE
Confidence 3599999999999999999 999999 999999999998761 124677776665 56799
Q ss_pred EEEECCCCCCHHHHhhhcc-ccccccc----------cCCcccCcccCcccccccccCCeEEEEeeecCCCCCCCeeeee
Q 003366 191 LIEDNGGGMNPDKMRHCMS-LGYSAKS----------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIG 259 (826)
Q Consensus 191 ~I~DNG~GMs~eeL~~~Ls-fG~SsK~----------~~~~~IGrfG~GfKsAsmrLG~~v~V~SK~~g~dg~~~t~Svg 259 (826)
+|.|||+||+.+|+++.|. ++.|... ++...|||||+||+||+| ++.+|+|+||+.|.+....|.|-|
T Consensus 77 tI~DNGIGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFm-VAdkV~V~T~~~~~~~~~~W~S~g 155 (623)
T COG0326 77 TISDNGIGMTKDEVIENLGTIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFM-VADKVTVITRSAGEDEAYHWESDG 155 (623)
T ss_pred EEEeCCCCCCHHHHHHHHHHhhhccHHHHHHHhccccccccccccccchhhheee-eeeeEEEEeccCCCCcceEEEEcC
Confidence 9999999999999999762 4444321 124569999999999999 999999999999864444666777
Q ss_pred ccceeec
Q 003366 260 LLSYTFL 266 (826)
Q Consensus 260 LLS~Tfl 266 (826)
-=.||.-
T Consensus 156 ~g~ytv~ 162 (623)
T COG0326 156 EGEYTVE 162 (623)
T ss_pred CCceEEe
Confidence 6556543
No 6
>PRK14083 HSP90 family protein; Provisional
Probab=99.62 E-value=1.1e-15 Score=176.71 Aligned_cols=113 Identities=21% Similarity=0.414 Sum_probs=89.4
Q ss_pred CCccccCCCccccccCchhhcccccccccHHHHHHHHhccchhhhhCC-------CceEEEEEEEccCCCceEEEEEECC
Q 003366 124 GGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNG-------ATYSNIDMLINRKDGSRMLLIEDNG 196 (826)
Q Consensus 124 ~~~~~~~~~l~~~~v~p~fLhSNSTSH~wpFgAIAELIDNAiDA~~~g-------At~V~Idi~~~~~~g~~~L~I~DNG 196 (826)
..||+++.++.++-.+.-| ++.+.| |+|||.||+||+... ...|.|.+. + .+...|.|.|||
T Consensus 3 ~~Fqae~~~ll~ll~~~LY------s~~~if--lrELiqNA~DA~~~~~~~~~~~~~~I~I~~~-d--~~~~~l~I~DnG 71 (601)
T PRK14083 3 HRFQVDLRGVIDLLSRHLY------SSPRVY--VRELLQNAVDAITARRALDPTAPGRIRIELT-D--AGGGTLIVEDNG 71 (601)
T ss_pred ccchHhHHHHHHHHHHhhc------CCcHHH--HHHHHHhHHHHHHhhhccCCCCCceEEEEEc-c--CCCcEEEEEeCC
Confidence 3589999999998888888 666654 999999999996531 114555542 2 346789999999
Q ss_pred CCCCHHHHhh-hccccccccccC------CcccCcccCcccccccccCCeEEEEeeecC
Q 003366 197 GGMNPDKMRH-CMSLGYSAKSKA------ANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 197 ~GMs~eeL~~-~LsfG~SsK~~~------~~~IGrfG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
+||+.+++.+ ++.+|.|.+... ...||+||+||++++| +|..|.|.||..+
T Consensus 72 iGmt~eel~~~l~~ig~S~k~~~~~~~~~~~~IG~FGIGf~S~F~-vad~v~V~Tr~~~ 129 (601)
T PRK14083 72 IGLTEEEVHEFLATIGRSSKRDENLGFARNDFLGQFGIGLLSCFL-VADEIVVVSRSAK 129 (601)
T ss_pred CCCCHHHHHHHHhhhccchhhhhhhcccccccccccccceEEEEE-ecCEEEEEeccCC
Confidence 9999999998 567998887532 3579999999998777 9999999999753
No 7
>PTZ00130 heat shock protein 90; Provisional
Probab=99.55 E-value=2.8e-15 Score=176.64 Aligned_cols=131 Identities=21% Similarity=0.324 Sum_probs=102.5
Q ss_pred CccccCCCccccccCchhhcccccccccHHHHHHHHhccchhhhhC-------------CCceEEEEEEEccCCCceEEE
Q 003366 125 GWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRMLL 191 (826)
Q Consensus 125 ~~~~~~~~l~~~~v~p~fLhSNSTSH~wpFgAIAELIDNAiDA~~~-------------gAt~V~Idi~~~~~~g~~~L~ 191 (826)
.||+++.+|.++.+|.-| |++.+| |+|||.||+||+.+ ....+.|.+..+. ....|+
T Consensus 69 ~FQaEv~~Lldiii~sLY------S~keIF--LRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~--~~~tLt 138 (814)
T PTZ00130 69 QYQTEVTRLMDIIVNSLY------TQKEVF--LRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANK--EKNILS 138 (814)
T ss_pred ehHHHHHHHHHHHhhccC------CCCCce--eehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECC--CCCEEE
Confidence 499999999999999999 999988 99999999999862 1135677776543 456899
Q ss_pred EEECCCCCCHHHHhhh-ccccccccc----------cCCcccCcccCcccccccccCCeEEEEeeecCCCCCCCeeeeec
Q 003366 192 IEDNGGGMNPDKMRHC-MSLGYSAKS----------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSIGL 260 (826)
Q Consensus 192 I~DNG~GMs~eeL~~~-LsfG~SsK~----------~~~~~IGrfG~GfKsAsmrLG~~v~V~SK~~g~dg~~~t~SvgL 260 (826)
|.|||+||+.++|.+. ..+|+|... .....|||||+||++++| +|.+|+|+||+.+.. ...|.|-|-
T Consensus 139 I~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFm-VAdkV~V~Trs~~~~-~~~W~s~g~ 216 (814)
T PTZ00130 139 ITDTGIGMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFL-VADKVIVYTKNNNDE-QYIWESTAD 216 (814)
T ss_pred EEECCCCCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhheee-ecCEEEEEEcCCCCc-eEEEEECCC
Confidence 9999999999999874 456665421 124589999999999988 999999999987633 345666665
Q ss_pred cceeecc
Q 003366 261 LSYTFLR 267 (826)
Q Consensus 261 LS~Tfl~ 267 (826)
-+|+.-+
T Consensus 217 g~y~I~e 223 (814)
T PTZ00130 217 AKFTIYK 223 (814)
T ss_pred CcEEEEE
Confidence 6666554
No 8
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=99.48 E-value=2.6e-14 Score=167.44 Aligned_cols=113 Identities=21% Similarity=0.334 Sum_probs=91.2
Q ss_pred CccccCCCccccccCchhhcccccccccHHHHHHHHhccchhhhhC-------------CCceEEEEEEEccCCCceEEE
Q 003366 125 GWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRMLL 191 (826)
Q Consensus 125 ~~~~~~~~l~~~~v~p~fLhSNSTSH~wpFgAIAELIDNAiDA~~~-------------gAt~V~Idi~~~~~~g~~~L~ 191 (826)
.||+++++|.++.+|.-| |++..| |+|||.||.||+.+ ....+.|.+..+. ....|.
T Consensus 6 ~Fqae~~~Ll~lli~slY------s~~~if--lRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~--~~~~L~ 75 (701)
T PTZ00272 6 AFQAEINQLMSLIINTFY------SNKEIF--LRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDK--ENKTLT 75 (701)
T ss_pred ecHHHHHHHHHHHHhccc------CCccHh--HHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcC--CCCEEE
Confidence 599999999999999999 999988 99999999999753 1223566665543 346899
Q ss_pred EEECCCCCCHHHHhhhc-cccccccc---------cCCcccCcccCcccccccccCCeEEEEeeecC
Q 003366 192 IEDNGGGMNPDKMRHCM-SLGYSAKS---------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 192 I~DNG~GMs~eeL~~~L-sfG~SsK~---------~~~~~IGrfG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
|.|||+||+.+||.+.| .+|.|... .....||+||+||.+++| +|..|.|.||+.+
T Consensus 76 I~DnGiGMt~edl~~~LgtIa~SGt~~f~~~~~~~~~~~~iGqFGvGfyS~Fm-vad~V~V~Srs~~ 141 (701)
T PTZ00272 76 VEDNGIGMTKADLVNNLGTIARSGTKAFMEALEAGGDMSMIGQFGVGFYSAYL-VADRVTVTSKNNS 141 (701)
T ss_pred EEECCCCCCHHHHHHHhhhhhhcchHHHHHHhhccCCccccCCCCcceEEEEE-eccEEEEEEecCC
Confidence 99999999999988854 46665321 123589999999999888 9999999999764
No 9
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=4.4e-12 Score=144.38 Aligned_cols=134 Identities=26% Similarity=0.390 Sum_probs=107.6
Q ss_pred CCCccccCCCccccccCchhhcccccccccHHHHHHHHhccchhhhhC-----------CCceEEEEEEEccCCCceEEE
Q 003366 123 SGGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-----------GATYSNIDMLINRKDGSRMLL 191 (826)
Q Consensus 123 ~~~~~~~~~~l~~~~v~p~fLhSNSTSH~wpFgAIAELIDNAiDA~~~-----------gAt~V~Idi~~~~~~g~~~L~ 191 (826)
...||++++++..+.++.-| ||+-.| ++|||.||.||..+ ......|.++.++ ....|+
T Consensus 36 t~~fqaE~~qLm~lii~s~Y------S~kEvF--lRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~~nk--~~~tlt 105 (656)
T KOG0019|consen 36 THEFQAETNQLMDIVAKSLY------SHKEVF--LRELISNASDALEKLRYLELKGDEKALPELEIRIITNK--DKRTIT 105 (656)
T ss_pred ceehhhhHHhHHHHHHHHhh------cchHHH--HHhhhccccchHHHHHHHhhcCccccccceeEEeccCC--CcceEE
Confidence 34699999999999999999 889999 99999999999765 1234677777665 567899
Q ss_pred EEECCCCCCHHHHhhhcccccccccc-----------C--CcccCcccCcccccccccCCeEEEEeeecCCCCCCCeeee
Q 003366 192 IEDNGGGMNPDKMRHCMSLGYSAKSK-----------A--ANTIGQYGNGFKTSTMRLGADVIVFSCCCGKDGKSPTRSI 258 (826)
Q Consensus 192 I~DNG~GMs~eeL~~~LsfG~SsK~~-----------~--~~~IGrfG~GfKsAsmrLG~~v~V~SK~~g~dg~~~t~Sv 258 (826)
|.|.|+||+.+||.+++ |+..+.. . .+.|||||+||++|+| .+.+|.|+||+...+ ...|-+-
T Consensus 106 i~DtGIGMTk~dLvnnL--GTIAkSGtK~Fmealkea~ad~~~IGQFGvGFYSayl-VAdkV~V~tk~~~~e-~y~Wes~ 181 (656)
T KOG0019|consen 106 IQDTGIGMTKEDLVNNL--GTIAKSGSKAFLEALKEAEAESNLIGQFGVGFYSAFM-VADRVVVTTRHPADE-GLQWTSN 181 (656)
T ss_pred EEecCCCcCHHHHHhhh--hhhhhcccHHHHHHHHhcccchhhhhhcccchhhhhh-hhheeEEeeccCCCc-ceeeecC
Confidence 99999999999999987 6554421 1 2579999999999998 999999999987643 5667777
Q ss_pred eccceeecccCC
Q 003366 259 GLLSYTFLRSTG 270 (826)
Q Consensus 259 gLLS~Tfl~~~~ 270 (826)
+--|++.-+.++
T Consensus 182 ~~gs~~v~~~~~ 193 (656)
T KOG0019|consen 182 GRGSYEIAEASG 193 (656)
T ss_pred CCCceEEeeccC
Confidence 777777665554
No 10
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=6.5e-12 Score=139.95 Aligned_cols=111 Identities=23% Similarity=0.369 Sum_probs=89.6
Q ss_pred CccccCCCccccccCchhhcccccccccHHHHHHHHhccchhhhhC-------------CCceEEEEEEEccCCCceEEE
Q 003366 125 GWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRMLL 191 (826)
Q Consensus 125 ~~~~~~~~l~~~~v~p~fLhSNSTSH~wpFgAIAELIDNAiDA~~~-------------gAt~V~Idi~~~~~~g~~~L~ 191 (826)
.||+++++|-.+-|+..| .++.+| ++|||.||.||..+ ....+.|.+..++ ....|.
T Consensus 76 ~FQaEVnRmMklIINSLY------~NKeIF--LRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dk--e~klLh 145 (785)
T KOG0020|consen 76 EFQAEVNRMMKLIINSLY------RNKEIF--LRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADK--EKKLLH 145 (785)
T ss_pred hHHHHHHHHHHHHHHHHh------hhhHHH--HHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeech--hhCeee
Confidence 499999999999999999 889999 99999999999765 1123456655443 456899
Q ss_pred EEECCCCCCHHHHhhhcccccccccc-----------------CCcccCcccCcccccccccCCeEEEEeeecC
Q 003366 192 IEDNGGGMNPDKMRHCMSLGYSAKSK-----------------AANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 192 I~DNG~GMs~eeL~~~LsfG~SsK~~-----------------~~~~IGrfG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
|.|.|.||++++|.+.| |+..|.. ..+.|||||+||++|++ ++..|+|.||+++
T Consensus 146 i~DtGiGMT~edLi~NL--GTIAkSGTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFYsAfL-VAD~vvVtsKhNd 216 (785)
T KOG0020|consen 146 ITDTGIGMTREDLIKNL--GTIAKSGTSEFLEKMQDSGDSEGLMNDLIGQFGVGFYSAFL-VADRVVVTSKHND 216 (785)
T ss_pred EecccCCccHHHHHHhh--hhhhcccHHHHHHHhhccccchhhHHHHHHhcchhhhhhhh-hcceEEEEeccCC
Confidence 99999999999999876 5544421 02569999999998887 8999999999875
No 11
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.95 E-value=1.6e-09 Score=116.16 Aligned_cols=89 Identities=20% Similarity=0.363 Sum_probs=71.0
Q ss_pred cccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccC------CcccC
Q 003366 150 HKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKA------ANTIG 223 (826)
Q Consensus 150 H~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~------~~~IG 223 (826)
-..|..||.|||+||+|| +|+.|.|.+.. ++...|.|.|||.||+++++..++..++++|... ....|
T Consensus 20 i~~~~~~l~eLi~Na~dA---~a~~I~i~~~~---~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~~~~~~~~~~~~~G 93 (312)
T TIGR00585 20 IERPASVVKELVENSLDA---GATRIDVEIEE---GGLKLIEVSDNGSGIDKEDLPLACERHATSKIQSFEDLERIETLG 93 (312)
T ss_pred hhhHHHHHHHHHHHHHHC---CCCEEEEEEEe---CCEEEEEEEecCCCCCHHHHHHHhhCCCcCCCCChhHhhcccccC
Confidence 477889999999999999 89988888754 3445699999999999999999777666666432 24689
Q ss_pred cccCcccccccccCCeEEEEeee
Q 003366 224 QYGNGFKTSTMRLGADVIVFSCC 246 (826)
Q Consensus 224 rfG~GfKsAsmrLG~~v~V~SK~ 246 (826)
..|.||.+ ++...+|+|.||.
T Consensus 94 ~rG~al~s--i~~~s~~~i~S~~ 114 (312)
T TIGR00585 94 FRGEALAS--ISSVSRLTITTKT 114 (312)
T ss_pred ccchHHHH--HHhhCcEEEEEee
Confidence 99999854 3344589999997
No 12
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=98.93 E-value=1.8e-09 Score=126.06 Aligned_cols=91 Identities=21% Similarity=0.366 Sum_probs=74.7
Q ss_pred cccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCC------cccC
Q 003366 150 HKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAA------NTIG 223 (826)
Q Consensus 150 H~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~------~~IG 223 (826)
-..|.++|.|||+||+|| +|+.|.|.+.. +|...|.|.|||.||+++++..++..++++|.... .+.|
T Consensus 20 I~~~~svvkElveNsiDA---gat~I~v~i~~---~g~~~i~V~DnG~Gi~~~~~~~~~~~~~tsKi~~~~dl~~~~t~G 93 (617)
T PRK00095 20 VERPASVVKELVENALDA---GATRIDIEIEE---GGLKLIRVRDNGCGISKEDLALALARHATSKIASLDDLEAIRTLG 93 (617)
T ss_pred ccCHHHHHHHHHHHHHhC---CCCEEEEEEEe---CCeEEEEEEEcCCCCCHHHHHHHhhccCCCCCCChhHhhccccCC
Confidence 478899999999999999 99999999853 46678999999999999999998877777775431 4689
Q ss_pred cccCcccccccccCCeEEEEeeecC
Q 003366 224 QYGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 224 rfG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
..|.|+.+.+ .+ .+++|.||+.+
T Consensus 94 frGeAL~sI~-~v-s~l~i~s~~~~ 116 (617)
T PRK00095 94 FRGEALPSIA-SV-SRLTLTSRTAD 116 (617)
T ss_pred cchhHHHhhh-hc-eEEEEEEecCC
Confidence 9999986433 34 58999999864
No 13
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=98.92 E-value=1.5e-09 Score=127.14 Aligned_cols=91 Identities=22% Similarity=0.353 Sum_probs=74.1
Q ss_pred cccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCC------cccC
Q 003366 150 HKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAA------NTIG 223 (826)
Q Consensus 150 H~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~------~~IG 223 (826)
-..|.+||.|||+||+|| ||+.|.|.+.. +|...|.|.|||+||+++||.-++.-.+.+|.... .++|
T Consensus 21 IerPaSVVKELVENSlDA---GAt~I~I~ve~---gG~~~I~V~DNG~Gi~~~Dl~la~~rHaTSKI~~~~DL~~I~TlG 94 (638)
T COG0323 21 IERPASVVKELVENSLDA---GATRIDIEVEG---GGLKLIRVRDNGSGIDKEDLPLALLRHATSKIASLEDLFRIRTLG 94 (638)
T ss_pred eecHHHHHHHHHhccccc---CCCEEEEEEcc---CCccEEEEEECCCCCCHHHHHHHHhhhccccCCchhHHHHhhccC
Confidence 467899999999999999 99999988853 57888999999999999999998766666675432 4567
Q ss_pred cccCcccccccccCCeEEEEeeecC
Q 003366 224 QYGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 224 rfG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
.-|-.| ++++-..+++|.||+.+
T Consensus 95 FRGEAL--~SIasVsrlti~Srt~~ 117 (638)
T COG0323 95 FRGEAL--ASIASVSRLTITSRTAE 117 (638)
T ss_pred ccHHHH--HHHHhhheeEEEeecCC
Confidence 777665 45666799999999654
No 14
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=98.72 E-value=6.5e-08 Score=108.50 Aligned_cols=97 Identities=24% Similarity=0.336 Sum_probs=73.6
Q ss_pred ccHHHHHHHHhccchhhhhCCC--ceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhcc-ccccccc-cCCcccCccc
Q 003366 151 KWALGAFAELLDNSLDEVCNGA--TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMS-LGYSAKS-KAANTIGQYG 226 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gA--t~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~Ls-fG~SsK~-~~~~~IGrfG 226 (826)
+....+|.|||+||+||+.... ..|.|.+.... .+...+.|.|||.|+.++.+-+++. +=+++|. ...++.||||
T Consensus 35 RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~-~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~QsRGqqG 113 (538)
T COG1389 35 RSLTTTVHELVTNSLDACEEAGILPDIKVEIERIG-KDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQSRGQQG 113 (538)
T ss_pred hHHHHHHHHHHhcchhhHHhcCCCCceEEEEEecC-CceEEEEEecCCCCCChhHhHHHHHHHhccchhhhhhhcccccc
Confidence 4566889999999999976421 34555554332 3567899999999999999998752 2255565 4568899999
Q ss_pred Ccccc----cccccCCeEEEEeeecC
Q 003366 227 NGFKT----STMRLGADVIVFSCCCG 248 (826)
Q Consensus 227 ~GfKs----AsmrLG~~v~V~SK~~g 248 (826)
+|.+. +.|..|+.|.|+|++.+
T Consensus 114 iGis~avLysQmTtGkPv~V~s~T~~ 139 (538)
T COG1389 114 IGISAAVLYSQMTTGKPVRVISSTGD 139 (538)
T ss_pred ccHHHHHHHHHhcCCCceEEEecCCC
Confidence 99986 45678999999999875
No 15
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=98.31 E-value=8.1e-07 Score=104.48 Aligned_cols=123 Identities=21% Similarity=0.257 Sum_probs=90.5
Q ss_pred ccCCCCCCCCCccccCCCccccccCchhhcccccccccHHHHHHHHhccchhhhhCC-CceEEEEEEEccCCCceEEEEE
Q 003366 115 AGDYEGAPSGGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIE 193 (826)
Q Consensus 115 ag~y~~~~~~~~~~~~~~l~~~~v~p~fLhSNSTSH~wpFgAIAELIDNAiDA~~~g-At~V~Idi~~~~~~g~~~L~I~ 193 (826)
+.+|++... ..-.++.|++.-|...- -||...-|...|.||||||+|+...+ |+.|.|.+.. + ..|+|.
T Consensus 5 ~~~y~~~~i----~~L~~lE~VrkRP~mYi-Gs~~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~---d--g~I~V~ 74 (631)
T PRK05559 5 TNNYNADSI----EVLEGLEPVRKRPGMYI-GSTDTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLHA---D--GSVSVR 74 (631)
T ss_pred cCCCCHHHC----eeccchHHHhcCCCcee-CCCCCchhhhhhhhhhccccchhhcCCCCEEEEEEeC---C--CcEEEE
Confidence 345665432 12367899999997532 45566788899999999999986554 7888888853 2 279999
Q ss_pred ECCCCCCHHHHhh--------hcc-ccccccccC---CcccCcccCcccccccccCCeEEEEeeecC
Q 003366 194 DNGGGMNPDKMRH--------CMS-LGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 194 DNG~GMs~eeL~~--------~Ls-fG~SsK~~~---~~~IGrfG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
|||.||+.+.+.. +|. +..++|... ..+.|..|+|++... .++..++|.|++.|
T Consensus 75 DnGrGIP~~~~~~~~~~~~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~vN-alS~~l~V~s~r~g 140 (631)
T PRK05559 75 DNGRGIPVGIHPEEGKSGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVVN-ALSSRLEVEVKRDG 140 (631)
T ss_pred EcCCCCCcccccccCCcchheeeeeccccCccCCccccccCcccccchhhhh-hheeeEEEEEEeCC
Confidence 9999999998887 443 344555432 357899999987544 48899999999765
No 16
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=98.23 E-value=2.4e-06 Score=97.80 Aligned_cols=99 Identities=21% Similarity=0.265 Sum_probs=71.2
Q ss_pred ccccHHHHHHHHhccchhhhhCCC--ceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhcc-cccccccc-CCcccCc
Q 003366 149 SHKWALGAFAELLDNSLDEVCNGA--TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMS-LGYSAKSK-AANTIGQ 224 (826)
Q Consensus 149 SH~wpFgAIAELIDNAiDA~~~gA--t~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~Ls-fG~SsK~~-~~~~IGr 224 (826)
-...+..++.|||+||+||..... ..|.|.+.... .+...|.|.|||.||+++++..++. |.+++|.. .....|.
T Consensus 25 ~~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~g-~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~~s~G~ 103 (488)
T TIGR01052 25 KIRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKIG-KDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSRGQ 103 (488)
T ss_pred CHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECC-CceEEEEEEECCCCCCHHHHHhhhhhccccCccccccccCCC
Confidence 346677899999999999954211 14666664321 1234799999999999999999765 56666643 3456799
Q ss_pred ccCccccccc----ccCCeEEEEeeecC
Q 003366 225 YGNGFKTSTM----RLGADVIVFSCCCG 248 (826)
Q Consensus 225 fG~GfKsAsm----rLG~~v~V~SK~~g 248 (826)
+|+|+.++.+ ..|..+.|.|+..|
T Consensus 104 ~GlGLs~~~~isq~~~G~~i~V~S~~~g 131 (488)
T TIGR01052 104 QGIGISGAVLYSQMTTGKPVKVISSTGG 131 (488)
T ss_pred ccEehhHHHHHHHHcCCceEEEEEecCC
Confidence 9999986443 34567999999765
No 17
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.22 E-value=3e-06 Score=76.12 Aligned_cols=91 Identities=22% Similarity=0.333 Sum_probs=67.4
Q ss_pred HHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCccccc
Q 003366 153 ALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTS 232 (826)
Q Consensus 153 pFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfKsA 232 (826)
+..+|.||++||+++...+ ..|.|.+... ++...|.|.|||.||+++++..++.-+++.+. .....+.+|+||..+
T Consensus 6 l~~il~~ll~Na~~~~~~~-~~I~i~~~~~--~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~-~~~~~~g~GlGL~~~ 81 (111)
T PF02518_consen 6 LRQILSELLDNAIKHSPEG-GKIDITIEED--DDHLSIEISDNGVGIPPEELEKLFEPFFTSDK-SETSISGHGLGLYIV 81 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHT-SEEEEEEEEE--TTEEEEEEEESSSSTTHHHHHHHCSTTSHSSS-SSGGSSSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCC-CEEEEEEEEe--cCeEEEEEEeccccccccccccchhhcccccc-cccccCCCChHHHHH
Confidence 4578999999999996532 4677777554 36789999999999999999998876655443 345567799999754
Q ss_pred cc---ccCCeEEEEeeec
Q 003366 233 TM---RLGADVIVFSCCC 247 (826)
Q Consensus 233 sm---rLG~~v~V~SK~~ 247 (826)
.. .++-++.+.+...
T Consensus 82 ~~~~~~~~g~l~~~~~~~ 99 (111)
T PF02518_consen 82 KQIAERHGGELTIESSEG 99 (111)
T ss_dssp HHHHHHTTEEEEEEEETT
T ss_pred HHHHHHCCCEEEEEEcCC
Confidence 33 4566677777643
No 18
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=98.20 E-value=2.9e-06 Score=98.14 Aligned_cols=98 Identities=27% Similarity=0.382 Sum_probs=69.0
Q ss_pred ccHHHHHHHHhccchhhhhCCC--ceEEEEEEEcc-CCCceEEEEEECCCCCCHHHHhhhcc-ccccccccC-CcccCcc
Q 003366 151 KWALGAFAELLDNSLDEVCNGA--TYSNIDMLINR-KDGSRMLLIEDNGGGMNPDKMRHCMS-LGYSAKSKA-ANTIGQY 225 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gA--t~V~Idi~~~~-~~g~~~L~I~DNG~GMs~eeL~~~Ls-fG~SsK~~~-~~~IGrf 225 (826)
.....+|.|||+||+||..... ..|.|.+.... .++...|.|.|||.||+++++..++. |-+.+|... ....|.+
T Consensus 35 ~~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~~s~G~~ 114 (535)
T PRK04184 35 RALYTTVKELVDNSLDACEEAGILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQQ 114 (535)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhccccccccccCCCCC
Confidence 3356889999999999954211 14666664321 13456799999999999999999764 445555433 4567999
Q ss_pred cCccccccc----ccCCeEEEEeeecC
Q 003366 226 GNGFKTSTM----RLGADVIVFSCCCG 248 (826)
Q Consensus 226 G~GfKsAsm----rLG~~v~V~SK~~g 248 (826)
|+||..+.+ ..|..+.|.|+..+
T Consensus 115 GLGLsiv~~isq~~~G~~I~V~S~~~~ 141 (535)
T PRK04184 115 GIGISAAVLYAQMTTGKPVRVISSTGG 141 (535)
T ss_pred CcchHHHHHHHHHhcCCcEEEEEecCC
Confidence 999986543 34677999998754
No 19
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=98.15 E-value=6.3e-06 Score=94.81 Aligned_cols=91 Identities=26% Similarity=0.384 Sum_probs=70.0
Q ss_pred cccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhh-hcccccccccc--CC---cccC
Q 003366 150 HKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRH-CMSLGYSAKSK--AA---NTIG 223 (826)
Q Consensus 150 H~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~-~LsfG~SsK~~--~~---~~IG 223 (826)
..-|..||.|||.||+|| ++|.|.|.+. .+|-..|.|.|||.|+-++||.- |=+|-+|--.+ +- .+.|
T Consensus 25 I~RP~NAlKEliENSLDA---~ST~I~V~vk---~GGLKLlQisDnG~GI~reDl~ilCeRftTSKL~kFEDL~~lsTyG 98 (694)
T KOG1979|consen 25 IQRPVNALKELIENSLDA---NSTSIDVLVK---DGGLKLLQISDNGSGIRREDLPILCERFTTSKLTKFEDLFSLSTYG 98 (694)
T ss_pred hhchHHHHHHHHhccccC---CCceEEEEEe---cCCeEEEEEecCCCccchhhhHHHHHHhhhhhcchhHHHHhhhhcC
Confidence 467889999999999999 8997777764 36778899999999999999986 55676653211 11 3445
Q ss_pred cccCcccccccccCCeEEEEeeecC
Q 003366 224 QYGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 224 rfG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
..|-. .|+|+-.++|+|.||..+
T Consensus 99 FRGEA--LASiShVA~VtV~TK~~~ 121 (694)
T KOG1979|consen 99 FRGEA--LASISHVAHVTVTTKTAE 121 (694)
T ss_pred ccHHH--HhhhhheeEEEEEEeecC
Confidence 55544 478888999999999875
No 20
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=98.14 E-value=3.7e-06 Score=99.93 Aligned_cols=96 Identities=23% Similarity=0.331 Sum_probs=70.7
Q ss_pred ccHHHHHHHHhccchhhhhCCCc--eEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhcc-ccccccccC-CcccCccc
Q 003366 151 KWALGAFAELLDNSLDEVCNGAT--YSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMS-LGYSAKSKA-ANTIGQYG 226 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt--~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~Ls-fG~SsK~~~-~~~IGrfG 226 (826)
.++..+|.|||+||+||...+.. .|.|.+... +....|.|.|||.||+++++.+++. |.+.+|... ....|+.|
T Consensus 45 r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~~--g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG~rG 122 (795)
T PRK14868 45 RGLVTAVKEAVDNALDATEEAGILPDIYVEIEEV--GDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQG 122 (795)
T ss_pred HHHHHHHHHHHHHHHHhCcccCCCceEEEEEEEC--CCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCCCCc
Confidence 56778999999999999432111 466666432 3345799999999999999999874 666666433 35679999
Q ss_pred Cccccccc----ccCCeEEEEeeecC
Q 003366 227 NGFKTSTM----RLGADVIVFSCCCG 248 (826)
Q Consensus 227 ~GfKsAsm----rLG~~v~V~SK~~g 248 (826)
+|+.++.. ..|..+.|.|+..+
T Consensus 123 ~GLglai~~sqlt~GgpI~I~S~~~~ 148 (795)
T PRK14868 123 IGISAAVLYSQLTSGKPAKITSRTQG 148 (795)
T ss_pred eehHHHHHHHHHcCCCcEEEEeCCCC
Confidence 99986543 34788999999754
No 21
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=98.04 E-value=4.2e-06 Score=98.50 Aligned_cols=108 Identities=24% Similarity=0.264 Sum_probs=78.2
Q ss_pred CCccccccCchhhcccccccccHHHHHHHHhccchhhhhC-CCceEEEEEEEccCCCceEEEEEECCCCCCHHH------
Q 003366 131 GGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDK------ 203 (826)
Q Consensus 131 ~~l~~~~v~p~fLhSNSTSH~wpFgAIAELIDNAiDA~~~-gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~ee------ 203 (826)
.++.+||.-|-..- -|| .|..+|.||||||+|...+ .|+.|.|.+.. + ..|+|.|||.||+.++
T Consensus 13 ~gle~VRkRPgMYi-gs~---~~~~lv~ElvdNsiDE~~ag~a~~I~V~i~~----d-~~I~V~DnGrGIp~~~h~~~g~ 83 (625)
T TIGR01055 13 DGLEPVRKRPGMYT-DTT---RPNHLVQEVIDNSVDEALAGFASIIMVILHQ----D-QSIEVFDNGRGMPVDIHPKEGV 83 (625)
T ss_pred cccHHhhcCCCCee-CCC---CcceeehhhhhcccchhhcCCCCEEEEEEeC----C-CeEEEEecCCccCcccccccCC
Confidence 67888888886432 222 1346899999999993333 58989988843 2 5799999999999988
Q ss_pred --Hhhhc-cccccccccC---CcccCcccCcccccccccCCeEEEEeeecC
Q 003366 204 --MRHCM-SLGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 204 --L~~~L-sfG~SsK~~~---~~~IGrfG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
+.-+| .+-.++|... ..+.|..|+|+++.. .++..+.|.|++.|
T Consensus 84 ~~~e~v~t~lhagsK~~~~~~~~SgG~~GvGls~vn-alS~~l~v~~~r~g 133 (625)
T TIGR01055 84 SAVEVILTTLHAGGKFSNKNYHFSGGLHGVGISVVN-ALSKRVKIKVYRQG 133 (625)
T ss_pred cHHHHhhhcccccCCCCCCcceecCCCcchhHHHHH-HhcCeEEEEEEECC
Confidence 65555 3444455432 257899999987544 48898999999875
No 22
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=98.00 E-value=4.7e-06 Score=97.33 Aligned_cols=89 Identities=27% Similarity=0.365 Sum_probs=64.4
Q ss_pred cccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccc-cccccccC------Cccc
Q 003366 150 HKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSL-GYSAKSKA------ANTI 222 (826)
Q Consensus 150 H~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~Lsf-G~SsK~~~------~~~I 222 (826)
-..+.+||.|||+||+|| ||+.|.|.+.+ .|-..|.|.|||+|+++.+..- |.. -+.+|... -.+.
T Consensus 18 I~sl~sAVKELvENSiDA---GAT~I~I~~kd---yG~d~IEV~DNG~GI~~~n~~~-l~lkh~TSKi~~f~Dl~~l~T~ 90 (672)
T KOG1978|consen 18 ITSLVSAVKELVENSIDA---GATAIDIKVKD---YGSDSIEVSDNGSGISATDFEG-LALKHTTSKIVSFADLAVLFTL 90 (672)
T ss_pred eccHHHHHHHHHhcCccc---CCceeeEecCC---CCcceEEEecCCCCCCccchhh-hhhhhhhhcccchhhhhhhhhh
Confidence 367789999999999999 99999988843 3778899999999999998775 222 23334321 2456
Q ss_pred CcccCcccccccccCCeEEEEeeec
Q 003366 223 GQYGNGFKTSTMRLGADVIVFSCCC 247 (826)
Q Consensus 223 GrfG~GfKsAsmrLG~~v~V~SK~~ 247 (826)
|..|--+ +++.-=.+|+|.|++.
T Consensus 91 GFRGEAL--SsLCa~~dv~I~Trt~ 113 (672)
T KOG1978|consen 91 GFRGEAL--SSLCALGDVMISTRSH 113 (672)
T ss_pred hhHHHHH--HhhhhccceEEEEeec
Confidence 7777665 2222227888999886
No 23
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=97.92 E-value=1.5e-05 Score=94.15 Aligned_cols=123 Identities=24% Similarity=0.286 Sum_probs=80.7
Q ss_pred ccCCCCCCCCCccccCCCccccccCchhhcccccccccHHHHHHHHhccchhhhhCC-CceEEEEEEEccCCCceEEEEE
Q 003366 115 AGDYEGAPSGGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIE 193 (826)
Q Consensus 115 ag~y~~~~~~~~~~~~~~l~~~~v~p~fLhSNSTSH~wpFgAIAELIDNAiDA~~~g-At~V~Idi~~~~~~g~~~L~I~ 193 (826)
+.+|++... ..-.++.|++.-|...- -||...-..-.|.||||||+|....+ |+.|.|.+.. +| .|.|.
T Consensus 5 ~~~Y~~~~i----~~L~~lE~Vr~RPgMYi-Gs~~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~~---~g--~I~V~ 74 (638)
T PRK05644 5 AQEYDASQI----QVLEGLEAVRKRPGMYI-GSTGERGLHHLVYEIVDNSIDEALAGYCDHIEVTINE---DG--SITVT 74 (638)
T ss_pred cCCCCHHHC----eEecchHHHhcCCCceE-CCCChhhHHhhhHHhhhcccccccCCCCCEEEEEEeC---CC--cEEEE
Confidence 355665442 12357888888886432 23333334456889999999943337 8989988853 23 79999
Q ss_pred ECCCCCCHHHHhh--------hcc-ccccccccC---CcccCcccCcccccccccCCeEEEEeeecC
Q 003366 194 DNGGGMNPDKMRH--------CMS-LGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 194 DNG~GMs~eeL~~--------~Ls-fG~SsK~~~---~~~IGrfG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
|||.||+.+.-.. +|. +..++|..+ ..+.|..|+|+++.. .++..++|.|++.|
T Consensus 75 DnG~GIp~~~h~~~ki~~~e~i~~~lhag~kfd~~~yk~s~G~~G~Gls~vn-alS~~~~v~t~r~g 140 (638)
T PRK05644 75 DNGRGIPVDIHPKTGKPAVEVVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVN-ALSTWLEVEVKRDG 140 (638)
T ss_pred EeCccccCCccCCCCCCchHHheeeecccCccCCCcccccCCccccchhhhh-heeceEEEEEEeCC
Confidence 9999999862221 222 223334322 247899999997544 48888999999765
No 24
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=97.82 E-value=3.2e-05 Score=92.75 Aligned_cols=111 Identities=23% Similarity=0.282 Sum_probs=75.9
Q ss_pred CCccccccCchh-hcccccccccHHHHHHHHhccchhhhhCC-CceEEEEEEEccCCCceEEEEEECCCCCCHH------
Q 003366 131 GGMDHVRVHPKF-LHSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIEDNGGGMNPD------ 202 (826)
Q Consensus 131 ~~l~~~~v~p~f-LhSNSTSH~wpFgAIAELIDNAiDA~~~g-At~V~Idi~~~~~~g~~~L~I~DNG~GMs~e------ 202 (826)
.++.|++.-|.. +-+.... .-..-.|.||||||+|...++ |+.|.|.+.. +| .|+|.|||.||+.+
T Consensus 16 ~gle~VRkRPgMYIGst~~~-~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~~---dg--sIsV~DnGrGIPvd~h~~~g 89 (756)
T PRK14939 16 KGLDAVRKRPGMYIGDTDDG-TGLHHMVYEVVDNAIDEALAGHCDDITVTIHA---DG--SVSVSDNGRGIPTDIHPEEG 89 (756)
T ss_pred cccHHHhcCCCCeeCCCCCC-cchhhhhhHhhcccccccccCCCCEEEEEEcC---CC--eEEEEEcCCcccCCcccccC
Confidence 678888888864 3332220 233345889999999943337 8988888853 23 79999999999987
Q ss_pred ----HHhhhccccccccccC---CcccCcccCcccccccccCCeEEEEeeecCC
Q 003366 203 ----KMRHCMSLGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCGK 249 (826)
Q Consensus 203 ----eL~~~LsfG~SsK~~~---~~~IGrfG~GfKsAsmrLG~~v~V~SK~~g~ 249 (826)
|+.-. .+...+|... .-+.|..|+|++.. -.++..+.|.+++.|.
T Consensus 90 ~~~~Elvlt-~lhAggKfd~~~ykvSgGlhGvG~svv-NAlS~~l~v~v~r~gk 141 (756)
T PRK14939 90 VSAAEVIMT-VLHAGGKFDQNSYKVSGGLHGVGVSVV-NALSEWLELTIRRDGK 141 (756)
T ss_pred Cchhhheee-eecccCCCCCCcccccCCccCccceEe-ehccCeEEEEEEeCCe
Confidence 44322 2334444332 23689999998744 4588999999998663
No 25
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=97.82 E-value=3.3e-05 Score=91.28 Aligned_cols=94 Identities=19% Similarity=0.241 Sum_probs=66.2
Q ss_pred HHHHHHHHhccchhhhhCCC--ceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhcc-ccccccccC-CcccCcccCc
Q 003366 153 ALGAFAELLDNSLDEVCNGA--TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMS-LGYSAKSKA-ANTIGQYGNG 228 (826)
Q Consensus 153 pFgAIAELIDNAiDA~~~gA--t~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~Ls-fG~SsK~~~-~~~IGrfG~G 228 (826)
...+|.|||+||+||..... ..|.|.+.... .+...|.|.|||.||+++++..++. |-+.+|... ....|..|+|
T Consensus 37 L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~g-~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~rG~G 115 (659)
T PRK14867 37 MTTIIHELVTNSLDACEEAEILPDIKVEIEKLG-SDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQQGIG 115 (659)
T ss_pred HHHHHHHHHHHHHHHhhccCCCceEEEEEEECC-CcEEEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCCCccc
Confidence 34789999999999954211 15666664321 1234699999999999999999875 344455322 2577999999
Q ss_pred ccccc----cccCCeEEEEeeec
Q 003366 229 FKTST----MRLGADVIVFSCCC 247 (826)
Q Consensus 229 fKsAs----mrLG~~v~V~SK~~ 247 (826)
+.++. +..|..+.|.|+..
T Consensus 116 La~a~~vsql~~G~pI~I~S~~g 138 (659)
T PRK14867 116 AAGVLLFSQITTGKPLKITTSTG 138 (659)
T ss_pred HHHHHHHHHHhcCCcEEEEEEcC
Confidence 97654 33577888999864
No 26
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=97.82 E-value=2.1e-05 Score=93.13 Aligned_cols=110 Identities=27% Similarity=0.314 Sum_probs=73.8
Q ss_pred CCccccccCchh-hcccccccccHHHHHHHHhccchhhhhCC-CceEEEEEEEccCCCceEEEEEECCCCCCHHHHh---
Q 003366 131 GGMDHVRVHPKF-LHSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMR--- 205 (826)
Q Consensus 131 ~~l~~~~v~p~f-LhSNSTSH~wpFgAIAELIDNAiDA~~~g-At~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~--- 205 (826)
.++.|++.-|.. +-+ +-..-..-.|.|||+||+|....+ |+.|.|.+.. +| .|.|.|||.||+.+.-.
T Consensus 10 ~~lE~vr~RP~mYiGs--~~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~~---~g--~I~V~DnG~GIp~~~h~~~k 82 (654)
T TIGR01059 10 EGLEAVRKRPGMYIGS--TGETGLHHLVYEVVDNSIDEAMAGYCDTINVTIND---DG--SVTVEDNGRGIPVDIHPEEG 82 (654)
T ss_pred cchHHHhcCCCceeCC--CCcchHHhhhHHhhhccccccccCCCCEEEEEEeC---CC--cEEEEEeCCCcCccccCcCC
Confidence 467777777764 322 222334456889999999943337 8999998853 23 49999999999986211
Q ss_pred -----hhcc-ccccccccC---CcccCcccCcccccccccCCeEEEEeeecC
Q 003366 206 -----HCMS-LGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 206 -----~~Ls-fG~SsK~~~---~~~IGrfG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
..+. +..++|..+ ..+.|..|+|+++.. .++..++|.|++.|
T Consensus 83 i~~~e~i~~~l~ag~kf~~~~~k~s~G~~G~gl~~in-alS~~l~v~~~~~g 133 (654)
T TIGR01059 83 ISAVEVVLTVLHAGGKFDKDSYKVSGGLHGVGVSVVN-ALSEWLEVTVFRDG 133 (654)
T ss_pred CCchHHheeeecccCccCCCcceecCCccchhHHHHH-HhcCeEEEEEEECC
Confidence 1121 223334322 257899999997544 48888999999865
No 27
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=97.73 E-value=1.9e-05 Score=92.49 Aligned_cols=86 Identities=23% Similarity=0.274 Sum_probs=60.8
Q ss_pred HHHHhccchhhhhCC-CceEEEEEEEccCCCceEEEEEECCCCCCHHHHhh--------hcc-ccccccccC---CcccC
Q 003366 157 FAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRH--------CMS-LGYSAKSKA---ANTIG 223 (826)
Q Consensus 157 IAELIDNAiDA~~~g-At~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~--------~Ls-fG~SsK~~~---~~~IG 223 (826)
|.||||||+||..++ |+.|.|.+.. +| .|+|.|||.||+.+.... .+. +-.++|..+ ..+.|
T Consensus 6 v~ElvdNAiD~~~~g~at~I~V~i~~---~g--~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~k~s~G 80 (594)
T smart00433 6 VDEIVDNAADEALAGYMDTIKVTIDK---DN--SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYKVSGG 80 (594)
T ss_pred EeeehhcccchhccCCCCEEEEEEeC---CC--eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCccccCC
Confidence 679999999995433 8989888853 23 899999999998644321 111 112233322 24789
Q ss_pred cccCcccccccccCCeEEEEeeecC
Q 003366 224 QYGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 224 rfG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
..|+|+++.. .++..++|.|++.|
T Consensus 81 ~~G~Gls~vn-alS~~l~v~~~~~g 104 (594)
T smart00433 81 LHGVGASVVN-ALSTEFEVEVARDG 104 (594)
T ss_pred cccchHHHHH-HhcCceEEEEEeCC
Confidence 9999987544 48899999999875
No 28
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.43 E-value=0.00042 Score=57.98 Aligned_cols=88 Identities=18% Similarity=0.216 Sum_probs=59.0
Q ss_pred HHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCccccccc
Q 003366 155 GAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTM 234 (826)
Q Consensus 155 gAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfKsAsm 234 (826)
.++.|||+||+++.......|.|.+... .+...|.|.|+|.||++..+..++... .+.......+.+|+|++.+..
T Consensus 3 ~~~~~ll~Na~~~~~~~~~~v~i~~~~~--~~~~~v~i~d~g~g~~~~~~~~~~~~~--~~~~~~~~~~~~g~gl~~~~~ 78 (103)
T cd00075 3 QVLLNLLSNAIKHTPEGGGRITISVERD--GDHLEIRVEDNGPGIPEEDLERIFERF--SDGSRSRKGGGTGLGLSIVKK 78 (103)
T ss_pred HHHHHHHHHHHHhCcCCCCeEEEEEEec--CCEEEEEEEeCCCCCCHHHHHHHhhhh--hcCCCCCCCCccccCHHHHHH
Confidence 5799999999999432124566666433 345789999999999999998876432 111223455678999875322
Q ss_pred ---ccCCeEEEEeee
Q 003366 235 ---RLGADVIVFSCC 246 (826)
Q Consensus 235 ---rLG~~v~V~SK~ 246 (826)
++|..+.+.+..
T Consensus 79 ~~~~~~g~~~~~~~~ 93 (103)
T cd00075 79 LVELHGGRIEVESEP 93 (103)
T ss_pred HHHHcCCEEEEEeCC
Confidence 345577776654
No 29
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=97.39 E-value=0.00024 Score=82.06 Aligned_cols=90 Identities=22% Similarity=0.350 Sum_probs=68.8
Q ss_pred ccccHHHHHHHHhccchhhhhCCC--ceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCccc
Q 003366 149 SHKWALGAFAELLDNSLDEVCNGA--TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYG 226 (826)
Q Consensus 149 SH~wpFgAIAELIDNAiDA~~~gA--t~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG 226 (826)
.|.+ ...|..|||||+||..... ..|.+.+. ..++...|.|.|+|+||+++.+...+..|+|+|. -+.-|
T Consensus 425 ~~~l-itIlGNLidNA~eA~~~~~~~k~I~l~i~--~~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk~-----~~~rG 496 (537)
T COG3290 425 PHDL-VTILGNLIDNALEALLAPEENKEIELSLS--DRGDELVIEVADTGPGIPPEVRDKIFEKGVSTKN-----TGGRG 496 (537)
T ss_pred hHHH-HHHHHHHHHHHHHHhhccCCCcEEEEEEE--ecCCEEEEEEeCCCCCCChHHHHHHHhcCccccC-----CCCCc
Confidence 3444 4799999999999976322 33555554 3467889999999999999999999999999984 35668
Q ss_pred Ccccc---cccccCCeEEEEeee
Q 003366 227 NGFKT---STMRLGADVIVFSCC 246 (826)
Q Consensus 227 ~GfKs---AsmrLG~~v~V~SK~ 246 (826)
+|++. ..=++|-.++|-+..
T Consensus 497 iGL~Lvkq~V~~~~G~I~~~s~~ 519 (537)
T COG3290 497 IGLYLVKQLVERLGGSIEVESEK 519 (537)
T ss_pred hhHHHHHHHHHHcCceEEEeeCC
Confidence 88863 333788888888863
No 30
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=97.32 E-value=0.00057 Score=58.16 Aligned_cols=88 Identities=19% Similarity=0.308 Sum_probs=59.2
Q ss_pred HHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCccccc
Q 003366 153 ALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTS 232 (826)
Q Consensus 153 pFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfKsA 232 (826)
...+|.||++||+++... ...|.|.+... ++...|.|.|+|.||+.+.+..++..++..+. .....+.+|+|++.+
T Consensus 6 l~~~~~~l~~n~~~~~~~-~~~v~i~~~~~--~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~gl~~~ 81 (111)
T smart00387 6 LRQVLSNLLDNAIKYTPE-GGRITVTLERD--GDHLEITVEDNGPGIPPEDLEKIFEPFFRTDG-RSRKIGGTGLGLSIV 81 (111)
T ss_pred HHHHHHHHHHHHHhcCCC-CCeEEEEEEEc--CCEEEEEEEeCCCCCCHHHHHHHhcCeEECCC-CCCCCCcccccHHHH
Confidence 456799999999998432 24677776543 35678999999999999999988765554432 223456789998742
Q ss_pred c---cccCCeEEEEe
Q 003366 233 T---MRLGADVIVFS 244 (826)
Q Consensus 233 s---mrLG~~v~V~S 244 (826)
- ..++-++.+.+
T Consensus 82 ~~~~~~~~g~~~~~~ 96 (111)
T smart00387 82 KKLVELHGGEISVES 96 (111)
T ss_pred HHHHHHcCCEEEEEe
Confidence 2 23444545443
No 31
>PRK10604 sensor protein RstB; Provisional
Probab=97.14 E-value=0.0012 Score=73.25 Aligned_cols=91 Identities=18% Similarity=0.321 Sum_probs=64.4
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCccc
Q 003366 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (826)
.++--++..||+||+.+ ....|.|.+... ++.-.|.|.|||.||+++++.+.+...+.........-|.+|+|+.
T Consensus 318 ~~l~~vl~NLl~NAik~---~~~~I~I~~~~~--~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~~~~~~~g~GLGL~ 392 (433)
T PRK10604 318 RLMERVLDNLLNNALRY---AHSRVRVSLLLD--GNQACLIVEDDGPGIPPEERERVFEPFVRLDPSRDRATGGCGLGLA 392 (433)
T ss_pred HHHHHHHHHHHHHHHHh---CCCeEEEEEEEE--CCEEEEEEEEcCCCCCHHHHhhcCCCCccCCCCCCCCCCCccchHH
Confidence 45667899999999998 446677777543 3556899999999999999999876444322111223467899985
Q ss_pred c---cccccCCeEEEEeee
Q 003366 231 T---STMRLGADVIVFSCC 246 (826)
Q Consensus 231 s---AsmrLG~~v~V~SK~ 246 (826)
. ..-..|-++.|.+..
T Consensus 393 ivk~i~~~~gG~i~v~s~~ 411 (433)
T PRK10604 393 IVHSIALAMGGSVNCDESE 411 (433)
T ss_pred HHHHHHHHCCCEEEEEecC
Confidence 3 223577788888764
No 32
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=97.09 E-value=0.0014 Score=71.54 Aligned_cols=91 Identities=13% Similarity=0.167 Sum_probs=63.0
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCccc
Q 003366 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (826)
.+...++.+||+||+.+ +...|.|.+... ++.-.|.|.|||.||+++++.+.+.-.+.........-+.+|+|+.
T Consensus 352 ~~l~~~l~nli~NA~~~---~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~~~~~g~GlGL~ 426 (461)
T PRK09470 352 NALASALENIVRNALRY---SHTKIEVAFSVD--KDGLTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGLA 426 (461)
T ss_pred HHHHHHHHHHHHHHHHh---CCCcEEEEEEEE--CCEEEEEEEECCCCCCHHHHHHhcCCCccCCcccCCCCCCcchhHH
Confidence 34566799999999998 455677776543 3556799999999999999998876444432211223467799986
Q ss_pred cc---ccccCCeEEEEeee
Q 003366 231 TS---TMRLGADVIVFSCC 246 (826)
Q Consensus 231 sA---smrLG~~v~V~SK~ 246 (826)
.+ ....|..+.+.|..
T Consensus 427 iv~~~v~~~~G~l~~~s~~ 445 (461)
T PRK09470 427 IVENAIQQHRGWVKAEDSP 445 (461)
T ss_pred HHHHHHHHCCCEEEEEECC
Confidence 42 23567788887764
No 33
>PRK10364 sensor protein ZraS; Provisional
Probab=96.99 E-value=0.0015 Score=72.39 Aligned_cols=87 Identities=14% Similarity=0.187 Sum_probs=64.0
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCccc
Q 003366 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (826)
.....++..||+||+++.. ....|.|.+... ++.-.|.|.|||.||+++.+.+++..|++.|. +..|+|+.
T Consensus 347 ~~l~~il~NLl~NA~k~~~-~~~~I~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~k~------~g~GlGL~ 417 (457)
T PRK10364 347 DRLTQVLLNLYLNAIQAIG-QHGVISVTASES--GAGVKISVTDSGKGIAADQLEAIFTPYFTTKA------EGTGLGLA 417 (457)
T ss_pred HHHHHHHHHHHHHHHHhcC-CCCeEEEEEEEe--CCeEEEEEEECCCCCCHHHHHHHhCccccCCC------CCCcccHH
Confidence 4567889999999999853 245677776543 34578999999999999999999887777653 23588886
Q ss_pred ccc---cccCCeEEEEeee
Q 003366 231 TST---MRLGADVIVFSCC 246 (826)
Q Consensus 231 sAs---mrLG~~v~V~SK~ 246 (826)
.+- -.+|-.+.|.+..
T Consensus 418 iv~~~v~~~gG~i~i~s~~ 436 (457)
T PRK10364 418 VVHNIVEQHGGTIQVASQE 436 (457)
T ss_pred HHHHHHHHCCCEEEEEeCC
Confidence 422 2567778877754
No 34
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=96.96 E-value=0.0017 Score=71.55 Aligned_cols=93 Identities=16% Similarity=0.183 Sum_probs=63.9
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCccc
Q 003366 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (826)
.....++.+||+||+.+... ...|.|.+... ++...|.|.|||.||+++++.+++...+..+.......|..|+|+.
T Consensus 316 ~~l~~vl~NLl~NAik~~~~-~~~I~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~ 392 (430)
T PRK11006 316 DQLRSAISNLVYNAVNHTPE-GTHITVRWQRV--PQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLA 392 (430)
T ss_pred HHHHHHHHHHHHHHHhcCCC-CCeEEEEEEEc--CCEEEEEEEEcCCCCCHHHHHHhccCcccccCCCCCCCCCCchHHH
Confidence 45678999999999999432 24466665443 3456899999999999999999876555433222223456788886
Q ss_pred cc---ccccCCeEEEEeee
Q 003366 231 TS---TMRLGADVIVFSCC 246 (826)
Q Consensus 231 sA---smrLG~~v~V~SK~ 246 (826)
.+ .-..|-.+.|-|..
T Consensus 393 ivk~iv~~~gG~i~i~s~~ 411 (430)
T PRK11006 393 IVKHALSHHDSRLEIESEV 411 (430)
T ss_pred HHHHHHHHCCCEEEEEecC
Confidence 42 22567888887764
No 35
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=96.95 E-value=0.00068 Score=79.92 Aligned_cols=89 Identities=20% Similarity=0.237 Sum_probs=62.9
Q ss_pred cHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhcccccccccc------CCcccCcc
Q 003366 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSK------AANTIGQY 225 (826)
Q Consensus 152 wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~------~~~~IGrf 225 (826)
....+|.|||-||+|| +|+.|.|.+.. ....+.|+|||.||++++|...-.--+.+|.. ...+.|..
T Consensus 21 sla~~VeElv~NSiDA---~At~V~v~V~~----~t~sv~ViDdG~G~~rdDl~~lg~ry~TSK~h~~ndl~~~~tyGfR 93 (1142)
T KOG1977|consen 21 SLAQCVEELVLNSIDA---EATCVAVRVNM----ETFSVQVIDDGFGMGRDDLEKLGNRYFTSKCHSVNDLENPRTYGFR 93 (1142)
T ss_pred HHHHHHHHHHhhcccc---CceEEEEEecC----ceeEEEEEecCCCccHHHHHHHHhhhhhhhceeccccccccccccc
Confidence 3457899999999999 99998888733 34679999999999999999754322333432 12456666
Q ss_pred cCcccccccccCCeEEEEeeecCC
Q 003366 226 GNGFKTSTMRLGADVIVFSCCCGK 249 (826)
Q Consensus 226 G~GfKsAsmrLG~~v~V~SK~~g~ 249 (826)
|-.+. +++=-..+.|+|+..+.
T Consensus 94 GeALa--sIsd~s~l~v~skkk~r 115 (1142)
T KOG1977|consen 94 GEALA--SISDMSSLVVISKKKNR 115 (1142)
T ss_pred hhhhh--hhhhhhhhhhhhhhcCC
Confidence 65553 33333567788888764
No 36
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=96.95 E-value=0.0025 Score=65.44 Aligned_cols=93 Identities=17% Similarity=0.210 Sum_probs=62.8
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCccc
Q 003366 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (826)
.....++.+||.||+.+... ...|.|.+... ++...|.|.|||.||+++.+.+++...+..+.......+..|+|+.
T Consensus 228 ~~l~~vl~nll~Nai~~~~~-~~~i~i~~~~~--~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~~~~~~~g~glGL~ 304 (333)
T TIGR02966 228 DELRSAFSNLVSNAIKYTPE-GGTITVRWRRD--GGGAEFSVTDTGIGIAPEHLPRLTERFYRVDKSRSRDTGGTGLGLA 304 (333)
T ss_pred HHHHHHHHHHHHHhheeCCC-CCeEEEEEEEc--CCEEEEEEEecCCCCCHHHHhhhccCceecCcccccCCCCCcccHH
Confidence 45677899999999998432 34466665432 3456899999999999999999887555332211122344588886
Q ss_pred ccc---cccCCeEEEEeee
Q 003366 231 TST---MRLGADVIVFSCC 246 (826)
Q Consensus 231 sAs---mrLG~~v~V~SK~ 246 (826)
.+- -.+|..+.+-|..
T Consensus 305 ~~~~~~~~~gG~i~~~s~~ 323 (333)
T TIGR02966 305 IVKHVLSRHHARLEIESEL 323 (333)
T ss_pred HHHHHHHHCCCEEEEEecC
Confidence 422 2478888888864
No 37
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=96.92 E-value=0.0017 Score=70.44 Aligned_cols=91 Identities=15% Similarity=0.186 Sum_probs=62.9
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCccc
Q 003366 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (826)
..++.++.+||+||+.+... ...|.|.+..+ ++...|.|.|||.||+++.+.+.+.-++..+......-+..|+|+.
T Consensus 352 ~~l~~~~~nll~Nai~~~~~-~~~I~i~~~~~--~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~~~~~g~GlGL~ 428 (457)
T TIGR01386 352 QMFRRAISNLLSNALRHTPD-GGTITVRIERR--SDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPARSNSGEGTGLGLA 428 (457)
T ss_pred HHHHHHHHHHHHHHHHcCCC-CceEEEEEEec--CCEEEEEEEeCCCCCCHHHHHHhccccccCCcccCCCCCCccccHH
Confidence 44667899999999998321 24577776543 4566899999999999999999877566544322222345788886
Q ss_pred ccc---cccCCeEEEEe
Q 003366 231 TST---MRLGADVIVFS 244 (826)
Q Consensus 231 sAs---mrLG~~v~V~S 244 (826)
.+. -++|-.+.+.+
T Consensus 429 i~~~~~~~~~G~~~~~~ 445 (457)
T TIGR01386 429 IVRSIMEAHGGRASAES 445 (457)
T ss_pred HHHHHHHHCCCEEEEEe
Confidence 422 24667777777
No 38
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=96.86 E-value=0.002 Score=64.46 Aligned_cols=88 Identities=16% Similarity=0.186 Sum_probs=59.7
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCccc
Q 003366 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (826)
.|.-.+|..||+||++|.. ...|.|.+... ++.-.|.|.|||.||+++.+...+..++..+.... -.|+|+.
T Consensus 227 ~~l~~vl~nLi~NAi~~~~--~~~i~i~~~~~--~~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~----g~GlGL~ 298 (336)
T COG0642 227 ERLRQVLVNLLSNAIKYTP--GGEITISVRQD--DEQVTISVEDTGPGIPEEELERIFEPFFRTDKSRS----GTGLGLA 298 (336)
T ss_pred HHHHHHHHHHHHHHhccCC--CCeEEEEEEec--CCeEEEEEEcCCCCCCHHHHHHhccCeeccCCCCC----CCCccHH
Confidence 5555699999999999932 46677777543 23568999999999999998888777776653211 4566665
Q ss_pred ccc---cccCCeEEEEeee
Q 003366 231 TST---MRLGADVIVFSCC 246 (826)
Q Consensus 231 sAs---mrLG~~v~V~SK~ 246 (826)
.+- -..|..+.+-+..
T Consensus 299 i~~~~~~~~~g~i~~~~~~ 317 (336)
T COG0642 299 IVKRIVELHGGTISVESEP 317 (336)
T ss_pred HHHHHHHHcCCEEEEEecC
Confidence 321 1334445555553
No 39
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=96.84 E-value=0.0025 Score=69.94 Aligned_cols=93 Identities=17% Similarity=0.205 Sum_probs=63.6
Q ss_pred cHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCcccc
Q 003366 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (826)
Q Consensus 152 wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfKs 231 (826)
....++.+||+||+.+... ...|.|.+... ++...|.|.|||.||+++++.+.+.-.+..+.......|..|+|+..
T Consensus 352 ~l~qvl~nll~NAi~~~~~-~~~I~i~~~~~--~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~~~~~~~g~GlGL~i 428 (466)
T PRK10549 352 RLMQLFNNLLENSLRYTDS-GGSLHISAEQR--DKTLRLTFADSAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAI 428 (466)
T ss_pred HHHHHHHHHHHHHHHhCCC-CCEEEEEEEEc--CCEEEEEEEecCCCcCHHHHHHhccCcccCCCCcCCCCCCCcHHHHH
Confidence 4567899999999998432 23567776543 35668999999999999999988764444332222345667899864
Q ss_pred c---ccccCCeEEEEeeec
Q 003366 232 S---TMRLGADVIVFSCCC 247 (826)
Q Consensus 232 A---smrLG~~v~V~SK~~ 247 (826)
+ .-+.|-.+.+.+...
T Consensus 429 v~~i~~~~~G~l~~~s~~~ 447 (466)
T PRK10549 429 CLNIVEAHNGRIIAAHSPF 447 (466)
T ss_pred HHHHHHHcCCEEEEEECCC
Confidence 2 225677888887643
No 40
>PRK09303 adaptive-response sensory kinase; Validated
Probab=96.81 E-value=0.0038 Score=68.54 Aligned_cols=92 Identities=16% Similarity=0.121 Sum_probs=63.2
Q ss_pred cHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCcccc
Q 003366 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (826)
Q Consensus 152 wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfKs 231 (826)
....+|..||+||+.+... ...|.|.+... .++...|.|.|||.||+++++.+++...+..+. ...-+.+|+|+..
T Consensus 272 ~l~qvl~NLl~NAik~~~~-~~~I~i~~~~~-~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~--~~~~~G~GLGL~i 347 (380)
T PRK09303 272 RIRQVLLNLLDNAIKYTPE-GGTITLSMLHR-TTQKVQVSICDTGPGIPEEEQERIFEDRVRLPR--DEGTEGYGIGLSV 347 (380)
T ss_pred HHHHHHHHHHHHHHhcCCC-CceEEEEEEec-CCCEEEEEEEEcCCCCCHHHHHHHccCceeCCC--CCCCCcccccHHH
Confidence 4567899999999998432 23466655332 234567999999999999999998865554432 2233568999863
Q ss_pred c---ccccCCeEEEEeeec
Q 003366 232 S---TMRLGADVIVFSCCC 247 (826)
Q Consensus 232 A---smrLG~~v~V~SK~~ 247 (826)
+ .-.+|-.+.|.|...
T Consensus 348 ~~~iv~~~gG~i~v~s~~~ 366 (380)
T PRK09303 348 CRRIVRVHYGQIWVDSEPG 366 (380)
T ss_pred HHHHHHHcCCEEEEEecCC
Confidence 2 225788888887643
No 41
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=96.77 E-value=0.0022 Score=76.19 Aligned_cols=108 Identities=24% Similarity=0.286 Sum_probs=70.0
Q ss_pred CCccccccCchh-hcccc--cccccHHHHHHHHhccchhhhhC-CCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhh
Q 003366 131 GGMDHVRVHPKF-LHSNA--TSHKWALGAFAELLDNSLDEVCN-GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRH 206 (826)
Q Consensus 131 ~~l~~~~v~p~f-LhSNS--TSH~wpFgAIAELIDNAiDA~~~-gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~ 206 (826)
.++.|++.-|.. +-|.. ..|.+ +.|+||||+|.... .|+.|.|.+.. ...|+|.|||.||+.+--..
T Consensus 14 ~glE~VRkRPgMYIGst~~~GL~hl----v~EIvdNavDE~~ag~~~~I~V~i~~-----dgsitV~DnGrGIPv~~h~~ 84 (637)
T TIGR01058 14 EGLDAVRKRPGMYIGSTDSKGLHHL----VWEIVDNSVDEVLAGYADNITVTLHK-----DNSITVQDDGRGIPTGIHQD 84 (637)
T ss_pred cccHHHhcCCCCeECCCCcchhhee----hhhhhcchhhhhhcCCCcEEEEEEcC-----CCeEEEEECCCcccCcccCc
Confidence 578888888864 33322 12444 66999999995433 47888888742 23799999999997642111
Q ss_pred --------hcc-ccccccccC---CcccCcccCcccccccccCCeEEEEeeecC
Q 003366 207 --------CMS-LGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 207 --------~Ls-fG~SsK~~~---~~~IGrfG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
.|. +-...|..+ ..+-|..|+|.+. .=.|+..++|.++++|
T Consensus 85 ~~~~~~E~v~t~LhaGgkfd~~~ykvSGGlhGvG~sv-vNAlS~~~~V~v~r~g 137 (637)
T TIGR01058 85 GNISTVETVFTVLHAGGKFDQGGYKTAGGLHGVGASV-VNALSSWLEVTVKRDG 137 (637)
T ss_pred CCCccceeEEEEecccCcCCCCcccccCCcccccccc-cceeeceEEEEEEECC
Confidence 111 222233322 2467999999864 3358899999998765
No 42
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=96.73 E-value=0.0033 Score=68.42 Aligned_cols=92 Identities=21% Similarity=0.174 Sum_probs=64.2
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCccc
Q 003366 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (826)
.++..++.+||.||+.+.. ....|.|.+... ++...|.|.|||.||+++++.+.+..+++.+.. ...-+..|+|+.
T Consensus 367 ~~l~~vl~nli~Na~~~~~-~~~~i~i~~~~~--~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~-~~~~~~~GlGL~ 442 (475)
T PRK11100 367 FLLRQALGNLLDNAIDFSP-EGGTITLSAEVD--GEQVALSVEDQGPGIPDYALPRIFERFYSLPRP-ANGRKSTGLGLA 442 (475)
T ss_pred HHHHHHHHHHHHHHHHhCC-CCCEEEEEEEEc--CCEEEEEEEECCCCCCHHHHHHHHHHHccCCCC-CCCCCCcchhHH
Confidence 4677899999999999832 235677776543 466789999999999999999988755544321 112245688886
Q ss_pred ccc---cccCCeEEEEeee
Q 003366 231 TST---MRLGADVIVFSCC 246 (826)
Q Consensus 231 sAs---mrLG~~v~V~SK~ 246 (826)
.+- ..+|-.+.+.|..
T Consensus 443 i~~~~~~~~~G~i~i~s~~ 461 (475)
T PRK11100 443 FVREVARLHGGEVTLRNRP 461 (475)
T ss_pred HHHHHHHHCCCEEEEEEcC
Confidence 422 2467778888764
No 43
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=96.72 E-value=0.0031 Score=67.38 Aligned_cols=91 Identities=18% Similarity=0.154 Sum_probs=64.6
Q ss_pred cccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCcc
Q 003366 150 HKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGF 229 (826)
Q Consensus 150 H~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~Gf 229 (826)
..|..-++..||+||+.+.. ....|.|.+..+ ++...|.|.|||.||+++++.+.+..++.... .-+..|+|+
T Consensus 245 ~~~l~~il~nLi~NA~k~~~-~~~~I~I~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~g~GlGL 317 (356)
T PRK10755 245 ATLLRLLLRNLVENAHRYSP-EGSTITIKLSQE--DGGAVLAVEDEGPGIDESKCGELSKAFVRMDS----RYGGIGLGL 317 (356)
T ss_pred HHHHHHHHHHHHHHHHhhCC-CCCcEEEEEEEc--CCEEEEEEEECCCCCCHHHHHHhCCCeEeCCC----CCCCcCHHH
Confidence 46777899999999999843 234577776443 35578999999999999999988765543221 224578888
Q ss_pred ccc---ccccCCeEEEEeeec
Q 003366 230 KTS---TMRLGADVIVFSCCC 247 (826)
Q Consensus 230 KsA---smrLG~~v~V~SK~~ 247 (826)
..+ .-.+|-.+.+.|...
T Consensus 318 ~i~~~i~~~~gg~i~i~s~~~ 338 (356)
T PRK10755 318 SIVSRITQLHHGQFFLQNRQE 338 (356)
T ss_pred HHHHHHHHHCCCEEEEEECCC
Confidence 642 225788888888753
No 44
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=96.68 E-value=0.0047 Score=67.34 Aligned_cols=89 Identities=18% Similarity=0.191 Sum_probs=61.0
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCccc
Q 003366 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (826)
.+..-++.+||+||+.+ +...|.|..... ++...|.|.|||.||+++++.+++.-++.... ...-+.+|+|+.
T Consensus 330 ~~l~~il~NLl~NA~k~---~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~--~~~~~g~GlGL~ 402 (435)
T PRK09467 330 IAIKRALANLVVNAARY---GNGWIKVSSGTE--GKRAWFQVEDDGPGIPPEQLKHLFQPFTRGDS--ARGSSGTGLGLA 402 (435)
T ss_pred HHHHHHHHHHHHHHHHh---CCCeEEEEEEec--CCEEEEEEEecCCCcCHHHHHHhcCCcccCCC--CCCCCCeehhHH
Confidence 34566899999999998 556677776543 35567999999999999999998865553221 111255788875
Q ss_pred cc---ccccCCeEEEEeee
Q 003366 231 TS---TMRLGADVIVFSCC 246 (826)
Q Consensus 231 sA---smrLG~~v~V~SK~ 246 (826)
.+ .-..|-++.|.+..
T Consensus 403 iv~~i~~~~~g~l~i~~~~ 421 (435)
T PRK09467 403 IVKRIVDQHNGKVELGNSE 421 (435)
T ss_pred HHHHHHHHCCCEEEEEECC
Confidence 32 12356777776654
No 45
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=96.46 E-value=0.0073 Score=67.42 Aligned_cols=86 Identities=23% Similarity=0.378 Sum_probs=61.0
Q ss_pred HHHHHHHHhccchhhhhC-CCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCcccc
Q 003366 153 ALGAFAELLDNSLDEVCN-GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (826)
Q Consensus 153 pFgAIAELIDNAiDA~~~-gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfKs 231 (826)
+..++.+|++||+++... ....|.|.+... ++...|.|.|||.||+++++.+++.-+++.|. +..|+|+..
T Consensus 434 l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~--~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~~~------~g~GlGL~i 505 (542)
T PRK11086 434 LITILGNLIENALEAVGGEEGGEISVSLHYR--NGWLHCEVSDDGPGIAPDEIDAIFDKGYSTKG------SNRGVGLYL 505 (542)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcEEEEEEEEc--CCEEEEEEEECCCCCCHHHHHHHHhCCCccCC------CCCcCcHHH
Confidence 557899999999998532 124566666543 45668999999999999999998877776652 235888763
Q ss_pred c---ccccCCeEEEEeee
Q 003366 232 S---TMRLGADVIVFSCC 246 (826)
Q Consensus 232 A---smrLG~~v~V~SK~ 246 (826)
+ .-..|-.+.|.+..
T Consensus 506 v~~iv~~~~G~i~v~s~~ 523 (542)
T PRK11086 506 VKQSVENLGGSIAVESEP 523 (542)
T ss_pred HHHHHHHcCCEEEEEeCC
Confidence 2 22466777777753
No 46
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=96.44 E-value=0.0062 Score=66.10 Aligned_cols=89 Identities=16% Similarity=0.183 Sum_probs=59.9
Q ss_pred HHHHHHHHhccchhhhhCCC---ceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCcc
Q 003366 153 ALGAFAELLDNSLDEVCNGA---TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGF 229 (826)
Q Consensus 153 pFgAIAELIDNAiDA~~~gA---t~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~Gf 229 (826)
.-.++.+||.||+++...+. ..|.|.... .++.-.|+|.|||.||+++.+.+.+...++.|.. ..+.-|+||
T Consensus 388 l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~--~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~---~~~G~GlGL 462 (494)
T TIGR02938 388 LRSLFKALVDNAIEAMNIKGWKRRELSITTAL--NGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGG---SRKHIGMGL 462 (494)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcceEEEEEEe--cCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCC---CCCCCcccH
Confidence 45689999999999954331 234444432 3466789999999999999999987655554421 134467777
Q ss_pred cccc---cccCCeEEEEeee
Q 003366 230 KTST---MRLGADVIVFSCC 246 (826)
Q Consensus 230 KsAs---mrLG~~v~V~SK~ 246 (826)
..+- -.+|-.+.|-|..
T Consensus 463 ~i~~~iv~~~gG~i~~~s~~ 482 (494)
T TIGR02938 463 SVAQEIVADHGGIIDLDDDY 482 (494)
T ss_pred HHHHHHHHHcCCEEEEEECC
Confidence 5321 2578888887754
No 47
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=96.32 E-value=0.0039 Score=73.45 Aligned_cols=109 Identities=27% Similarity=0.301 Sum_probs=72.3
Q ss_pred CCccccccCchhh-ccc---ccccccHHHHHHHHhccchhhhhCC-CceEEEEEEEccCCCceEEEEEECCCCCCHHH--
Q 003366 131 GGMDHVRVHPKFL-HSN---ATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDK-- 203 (826)
Q Consensus 131 ~~l~~~~v~p~fL-hSN---STSH~wpFgAIAELIDNAiDA~~~g-At~V~Idi~~~~~~g~~~L~I~DNG~GMs~ee-- 203 (826)
.+|.+|+.-|-.. -+- .-.|.- +-|+||||+|...+| |+.|.|.+.. ...|+|.|||.||+-+-
T Consensus 15 ~GLEaVRkRPGMYIGst~~~~GLhHl----v~EVvDNsiDEalaG~~~~I~V~l~~-----d~sisV~DnGRGIPvdiH~ 85 (635)
T COG0187 15 EGLEAVRKRPGMYIGSTGDGRGLHHL----VWEVVDNSIDEALAGYADRIDVTLHE-----DGSISVEDNGRGIPVDIHP 85 (635)
T ss_pred cCcHHhhcCCCceeccCCCCCcceee----EeEeeechHhHHhhCcCcEEEEEEcC-----CCeEEEEECCCCCccccCC
Confidence 5677777777543 211 122332 569999999987654 6777777743 34799999999998765
Q ss_pred ------Hhhhcc-ccccccccC---CcccCcccCcccccccccCCeEEEEeeecCC
Q 003366 204 ------MRHCMS-LGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCGK 249 (826)
Q Consensus 204 ------L~~~Ls-fG~SsK~~~---~~~IGrfG~GfKsAsmrLG~~v~V~SK~~g~ 249 (826)
+.-+|+ +....|... ..+=|.-|+|.+ +.=.|...+.|.++++|+
T Consensus 86 ~~~~~~vEvI~T~LHAGGKFd~~~YkvSGGLHGVG~S-VVNALS~~l~v~v~r~gk 140 (635)
T COG0187 86 KEKVSAVEVIFTVLHAGGKFDNDSYKVSGGLHGVGVS-VVNALSTWLEVEVKRDGK 140 (635)
T ss_pred CCCCCceEEEEEeeccCcccCCCccEeecCCCccceE-EEecccceEEEEEEECCE
Confidence 222333 333334322 245799999964 445799999999998764
No 48
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=96.27 E-value=0.011 Score=65.50 Aligned_cols=87 Identities=22% Similarity=0.273 Sum_probs=60.4
Q ss_pred cHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCcccc
Q 003366 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (826)
Q Consensus 152 wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfKs 231 (826)
....++.+||+||+.+... ...|.|.+.... ++...|.|.|||.||+++.+...+..+++.+. +..|+|+..
T Consensus 500 ~l~~~~~nli~na~~~~~~-~~~i~v~~~~~~-~~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~~------~g~glGL~~ 571 (607)
T PRK11360 500 LLKQVLLNILINAVQAISA-RGKIRIRTWQYS-DGQVAVSIEDNGCGIDPELLKKIFDPFFTTKA------KGTGLGLAL 571 (607)
T ss_pred HHHHHHHHHHHHHHHHhcC-CCeEEEEEEEcC-CCEEEEEEEeCCCCCCHHHHhhhcCCceeCCC------CCCchhHHH
Confidence 3667899999999998542 335666665432 22278999999999999999988776665442 235777653
Q ss_pred ---cccccCCeEEEEeee
Q 003366 232 ---STMRLGADVIVFSCC 246 (826)
Q Consensus 232 ---AsmrLG~~v~V~SK~ 246 (826)
-.-.+|-++.|-|..
T Consensus 572 ~~~~~~~~~G~i~~~s~~ 589 (607)
T PRK11360 572 SQRIINAHGGDIEVESEP 589 (607)
T ss_pred HHHHHHHcCCEEEEEEcC
Confidence 222477788887764
No 49
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=96.26 E-value=0.0071 Score=68.34 Aligned_cols=90 Identities=17% Similarity=0.217 Sum_probs=63.1
Q ss_pred cHHHHHHHHhccchhhhhC---CCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCc
Q 003366 152 WALGAFAELLDNSLDEVCN---GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNG 228 (826)
Q Consensus 152 wpFgAIAELIDNAiDA~~~---gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~G 228 (826)
.....+.+||+||+++... +...|.|.+... ++...|.|.|||.||+++++.+++..|++.|.. .-|.-|+|
T Consensus 432 ~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~---~~~g~GlG 506 (545)
T PRK15053 432 EFAAIVGNLLDNAFEASLRSDEGNKIVELFLSDE--GDDVVIEVADQGCGVPESLRDKIFEQGVSTRAD---EPGEHGIG 506 (545)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEEC--CCEEEEEEEeCCCCcCHHHHHHHhCCCCCCCCC---CCCCceeC
Confidence 3456789999999998532 235566666442 455679999999999999999999888876632 23445888
Q ss_pred ccccc---cccCCeEEEEeee
Q 003366 229 FKTST---MRLGADVIVFSCC 246 (826)
Q Consensus 229 fKsAs---mrLG~~v~V~SK~ 246 (826)
+..+- -..|-.+.|.|..
T Consensus 507 L~ivk~iv~~~~G~i~v~s~~ 527 (545)
T PRK15053 507 LYLIASYVTRCGGVITLEDND 527 (545)
T ss_pred HHHHHHHHHHcCCEEEEEECC
Confidence 86322 2456677777653
No 50
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=96.24 E-value=0.0067 Score=71.66 Aligned_cols=85 Identities=22% Similarity=0.243 Sum_probs=60.1
Q ss_pred HHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHH-HhhhccccccccccCCcccCcccCcccc
Q 003366 153 ALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDK-MRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (826)
Q Consensus 153 pFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~ee-L~~~LsfG~SsK~~~~~~IGrfG~GfKs 231 (826)
...++.+||+||+++.. ....|.|.+... ++...|.|.|||.||+++. ..+.+...++.+. +..|+|+..
T Consensus 580 l~~vl~nLl~NAik~~~-~~~~I~I~~~~~--~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~~------~G~GLGL~i 650 (679)
T TIGR02916 580 LERVLGHLVQNALEATP-GEGRVAIRVERE--CGAARIEIEDSGCGMSPAFIRERLFKPFDTTKG------AGMGIGVYE 650 (679)
T ss_pred HHHHHHHHHHHHHHhCC-CCCcEEEEEEEc--CCEEEEEEEEcCCCcChHHHHHhcCCCCCCCCC------CCcchhHHH
Confidence 45689999999999943 234577776543 3567899999999999999 5556655555442 456888764
Q ss_pred c---ccccCCeEEEEeee
Q 003366 232 S---TMRLGADVIVFSCC 246 (826)
Q Consensus 232 A---smrLG~~v~V~SK~ 246 (826)
+ .-.+|-++.|.|..
T Consensus 651 ~~~iv~~~gG~i~v~s~~ 668 (679)
T TIGR02916 651 CRQYVEEIGGRIEVESTP 668 (679)
T ss_pred HHHHHHHcCCEEEEEecC
Confidence 3 22578888888864
No 51
>PRK09835 sensor kinase CusS; Provisional
Probab=96.20 E-value=0.013 Score=64.57 Aligned_cols=92 Identities=17% Similarity=0.150 Sum_probs=61.5
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCccc
Q 003366 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (826)
.+...+|.+||+||+.+.. ....|.|.+... ++...|.|.|||.||+++++...+.-.+.........-+.+|+||.
T Consensus 374 ~~l~~vl~nll~Na~~~~~-~~~~I~i~~~~~--~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~ 450 (482)
T PRK09835 374 LMLRRAISNLLSNALRYTP-AGEAITVRCQEV--DHQVQLVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLA 450 (482)
T ss_pred HHHHHHHHHHHHHHHhcCC-CCCeEEEEEEEe--CCEEEEEEEECCCCcCHHHHHHHhCCcccCCCCCCCCCCCcchHHH
Confidence 3467889999999999843 124577776543 3456899999999999999998775433322111122345788885
Q ss_pred cc---ccccCCeEEEEee
Q 003366 231 TS---TMRLGADVIVFSC 245 (826)
Q Consensus 231 sA---smrLG~~v~V~SK 245 (826)
.+ .-.+|..+.|-|.
T Consensus 451 i~~~i~~~~~g~i~~~s~ 468 (482)
T PRK09835 451 IVKSIVVAHKGTVAVTSD 468 (482)
T ss_pred HHHHHHHHCCCEEEEEEC
Confidence 32 2256778888775
No 52
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=96.13 E-value=0.012 Score=70.41 Aligned_cols=94 Identities=12% Similarity=0.087 Sum_probs=64.9
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCccc
Q 003366 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (826)
.+...+|..||+||+.+... ...|.|.+..+ ++...|.|.|||.||+++++.+.+...++.+......-+..|+|+.
T Consensus 596 ~~L~~il~NLI~NAik~s~~-~~~I~I~~~~~--~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~~~~~~~g~GLGL~ 672 (703)
T TIGR03785 596 ELIAQMLDKLVDNAREFSPE-DGLIEVGLSQN--KSHALLTVSNEGPPLPEDMGEQLFDSMVSVRDQGAQDQPHLGLGLY 672 (703)
T ss_pred HHHHHHHHHHHHHHHHHCCC-CCeEEEEEEEc--CCEEEEEEEEcCCCCCHHHHHHHhCCCeecCCCCCCCCCCccHHHH
Confidence 34567899999999998532 34467766543 4566799999999999999999887665544322222345788886
Q ss_pred cc---ccccCCeEEEEeeec
Q 003366 231 TS---TMRLGADVIVFSCCC 247 (826)
Q Consensus 231 sA---smrLG~~v~V~SK~~ 247 (826)
.+ ....|-.+.+.+...
T Consensus 673 Ivr~Iv~~~gG~I~v~s~~~ 692 (703)
T TIGR03785 673 IVRLIADFHQGRIQAENRQQ 692 (703)
T ss_pred HHHHHHHHcCCEEEEEECCC
Confidence 42 235677888877643
No 53
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=96.04 E-value=0.016 Score=70.15 Aligned_cols=89 Identities=18% Similarity=0.217 Sum_probs=63.2
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEc-------------cCCCceEEEEEECCCCCCHHHHhhhcccccccccc
Q 003366 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLIN-------------RKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSK 217 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~-------------~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~ 217 (826)
.....+|..||+||+.+.. ....|.|.+... ..++...|.|.|||.||+++++.+++...++.+.
T Consensus 559 ~~L~qvl~NLl~NAik~~~-~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~- 636 (828)
T PRK13837 559 AELQQVLMNLCSNAAQAMD-GAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA- 636 (828)
T ss_pred HHHHHHHHHHHHHHHHHcc-cCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC-
Confidence 4466789999999999854 234566666443 1134457999999999999999998765555442
Q ss_pred CCcccCcccCccccc---ccccCCeEEEEeee
Q 003366 218 AANTIGQYGNGFKTS---TMRLGADVIVFSCC 246 (826)
Q Consensus 218 ~~~~IGrfG~GfKsA---smrLG~~v~V~SK~ 246 (826)
+..|+|+..+ .-.+|-.+.|.|..
T Consensus 637 -----~G~GLGL~i~~~iv~~~gG~i~v~s~~ 663 (828)
T PRK13837 637 -----GGTGLGLATVHGIVSAHAGYIDVQSTV 663 (828)
T ss_pred -----CCCcchHHHHHHHHHHCCCEEEEEecC
Confidence 5678888632 22578888888864
No 54
>PRK10815 sensor protein PhoQ; Provisional
Probab=95.99 E-value=0.016 Score=66.25 Aligned_cols=85 Identities=18% Similarity=0.234 Sum_probs=59.3
Q ss_pred HHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCccccc
Q 003366 153 ALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTS 232 (826)
Q Consensus 153 pFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfKsA 232 (826)
...++..||+||+.+. ...|.|.+... ++...|.|.|||.||+++++.+.+.-++.... .-+-.|+|+..+
T Consensus 379 l~~vl~NLi~NAik~~---~~~i~I~~~~~--~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~----~~~G~GLGL~Iv 449 (485)
T PRK10815 379 FMEVMGNVLDNACKYC---LEFVEISARQT--DEHLHIVVEDDGPGIPESKRELIFDRGQRADT----LRPGQGLGLSVA 449 (485)
T ss_pred HHHHHHHHHHHHHHhc---CCcEEEEEEEe--CCEEEEEEEECCCCcCHHHHHHHhCCcccCCC----CCCCcchhHHHH
Confidence 4568999999999983 34566666442 35567999999999999999987764443221 123468888642
Q ss_pred ---ccccCCeEEEEeee
Q 003366 233 ---TMRLGADVIVFSCC 246 (826)
Q Consensus 233 ---smrLG~~v~V~SK~ 246 (826)
.-..|-.+.|.+..
T Consensus 450 k~iv~~~gG~i~v~s~~ 466 (485)
T PRK10815 450 REITEQYEGKISAGDSP 466 (485)
T ss_pred HHHHHHcCCEEEEEECC
Confidence 22567788887764
No 55
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=95.97 E-value=0.025 Score=59.87 Aligned_cols=89 Identities=16% Similarity=0.114 Sum_probs=57.9
Q ss_pred cHHHHHHHHhccchhhhhCCCceEEEEEEEcc----CC----CceEEEEEECCCCCCHHHHhhhccccccccccCCcccC
Q 003366 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINR----KD----GSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIG 223 (826)
Q Consensus 152 wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~----~~----g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IG 223 (826)
....++..||+||+.+.......|.|...... .+ ....|.|.|||.||+++.+.+.+.-+++.+. +
T Consensus 237 ~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~~------~ 310 (348)
T PRK11073 237 QIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGRE------G 310 (348)
T ss_pred HHHHHHHHHHHHHHHHhccCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCCC------C
Confidence 46688999999999985223344555442110 00 1236899999999999999888765555442 2
Q ss_pred cccCcccc---cccccCCeEEEEeee
Q 003366 224 QYGNGFKT---STMRLGADVIVFSCC 246 (826)
Q Consensus 224 rfG~GfKs---AsmrLG~~v~V~SK~ 246 (826)
--|+|+.. ..-..|-.+.|.|..
T Consensus 311 g~GlGL~i~~~iv~~~gG~i~~~s~~ 336 (348)
T PRK11073 311 GTGLGLSIARNLIDQHSGKIEFTSWP 336 (348)
T ss_pred CccCCHHHHHHHHHHcCCeEEEEecC
Confidence 34777753 223567788887753
No 56
>PRK10337 sensor protein QseC; Provisional
Probab=95.64 E-value=0.024 Score=62.32 Aligned_cols=86 Identities=17% Similarity=0.192 Sum_probs=57.6
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCccc
Q 003366 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (826)
..+..++.+||+||+.+... ...|.|.+.. ..|.|.|||.||+++++.+.+.-.+..+ ....+.+|+|+.
T Consensus 351 ~~l~~vl~Nli~NA~k~~~~-~~~i~i~~~~------~~i~i~D~G~Gi~~~~~~~if~~f~~~~---~~~~~g~GlGL~ 420 (449)
T PRK10337 351 LLLSLLVRNLLDNAIRYSPQ-GSVVDVTLNA------RNFTVRDNGPGVTPEALARIGERFYRPP---GQEATGSGLGLS 420 (449)
T ss_pred HHHHHHHHHHHHHHHhhCCC-CCeEEEEEEe------eEEEEEECCCCCCHHHHHHhcccccCCC---CCCCCccchHHH
Confidence 34566899999999998321 2345555532 2699999999999999998876444322 122345899986
Q ss_pred cc---ccccCCeEEEEeee
Q 003366 231 TS---TMRLGADVIVFSCC 246 (826)
Q Consensus 231 sA---smrLG~~v~V~SK~ 246 (826)
.+ .-..|-++.+-+..
T Consensus 421 iv~~i~~~~gg~l~~~s~~ 439 (449)
T PRK10337 421 IVRRIAKLHGMNVSFGNAP 439 (449)
T ss_pred HHHHHHHHcCCEEEEEecC
Confidence 42 22567788877754
No 57
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.52 E-value=0.16 Score=49.18 Aligned_cols=89 Identities=29% Similarity=0.516 Sum_probs=71.1
Q ss_pred cccchhhhhhhhhhhHHHHHHHHhHHh---HHHHH-------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003366 717 CSLGANLGQLKQENHELKKRLEKKEGE---LQEER-------ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRR 786 (826)
Q Consensus 717 ~~~~~~~~~~~~e~~~~~~~~~~~~~~---~~~e~-------~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr 786 (826)
..+.+.|+++..|...|+++|.+++.. +..|+ |..+.+..++..++++++++++..+++..+|.| +
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGE----K 94 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGE----K 94 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----h
Confidence 346778999999999999999888766 44444 777888999999999999999999999999987 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003366 787 EREEENLRKKIKDASDTIQDLLD 809 (826)
Q Consensus 787 ~~e~~~lr~kl~~a~~~i~~~~~ 809 (826)
..+.|.||.-+.|--.-..+.++
T Consensus 95 ~E~veEL~~Dv~DlK~myr~Qi~ 117 (120)
T PF12325_consen 95 SEEVEELRADVQDLKEMYREQID 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888877665544444443
No 58
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=95.39 E-value=0.038 Score=66.37 Aligned_cols=94 Identities=16% Similarity=0.171 Sum_probs=58.9
Q ss_pred cHHHHHHHHhccchhhhhCCCceEEEEEEEccC-CC--ceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCc
Q 003366 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRK-DG--SRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNG 228 (826)
Q Consensus 152 wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~-~g--~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~G 228 (826)
+...+|..||+||+.+...+ .|.|.+..... ++ .-.|.|.|||.||+++++.+.+...+..........|..|+|
T Consensus 408 ~l~~vl~NLl~NAik~~~~g--~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GLG 485 (919)
T PRK11107 408 RLQQIITNLVGNAIKFTESG--NIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHGGTGLG 485 (919)
T ss_pred HHHHHHHHHHHHHhhcCCCC--cEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCCCCCCCCCcchh
Confidence 35568999999999985432 34444432111 11 346999999999999999987753222111111234667888
Q ss_pred cccc---ccccCCeEEEEeeec
Q 003366 229 FKTS---TMRLGADVIVFSCCC 247 (826)
Q Consensus 229 fKsA---smrLG~~v~V~SK~~ 247 (826)
+..+ .-.+|-.+.|.|...
T Consensus 486 L~i~~~i~~~~gG~i~v~s~~~ 507 (919)
T PRK11107 486 LVITQKLVNEMGGDISFHSQPN 507 (919)
T ss_pred HHHHHHHHHHhCCEEEEEecCC
Confidence 8532 224778888888753
No 59
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=95.35 E-value=0.024 Score=72.42 Aligned_cols=88 Identities=22% Similarity=0.233 Sum_probs=61.3
Q ss_pred HHHHHHhccchhhhh-----CCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhh------hcccc---ccccccC--
Q 003366 155 GAFAELLDNSLDEVC-----NGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRH------CMSLG---YSAKSKA-- 218 (826)
Q Consensus 155 gAIAELIDNAiDA~~-----~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~------~LsfG---~SsK~~~-- 218 (826)
-.+-|+||||+|... ..++.|.|.+.. ....|+|.|||.||.-+--.. -|.|| +++|..+
T Consensus 60 ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~~----d~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfdd~~ 135 (1388)
T PTZ00108 60 KIFDEILVNAADNKARDKGGHRMTYIKVTIDE----ENGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYDDTE 135 (1388)
T ss_pred hhHHHHhhhhhhhhcccCCCCCccEEEEEEec----cCCeEEEEecCCcccCCCCCCCCCccceEEEEEeeccccCCCCc
Confidence 458899999999865 236778887743 224799999999997642211 12233 3444432
Q ss_pred -CcccCcccCcccccccccCCeEEEEeeec
Q 003366 219 -ANTIGQYGNGFKTSTMRLGADVIVFSCCC 247 (826)
Q Consensus 219 -~~~IGrfG~GfKsAsmrLG~~v~V~SK~~ 247 (826)
..+-|+-|+|.+. +-.+...++|.+++.
T Consensus 136 yKvSGGlhGVGasv-vNalS~~f~Vev~r~ 164 (1388)
T PTZ00108 136 KRVTGGRNGFGAKL-TNIFSTKFTVECVDS 164 (1388)
T ss_pred eeeecccccCCccc-cccccceEEEEEEEC
Confidence 2468999999874 445899999999986
No 60
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=95.35 E-value=0.015 Score=69.04 Aligned_cols=85 Identities=21% Similarity=0.221 Sum_probs=57.1
Q ss_pred HHHHhccchhhhhC----CCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhh---------hcccc---ccccccC--
Q 003366 157 FAELLDNSLDEVCN----GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRH---------CMSLG---YSAKSKA-- 218 (826)
Q Consensus 157 IAELIDNAiDA~~~----gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~---------~LsfG---~SsK~~~-- 218 (826)
+-|+||||+|.... .++.|.|.+. ...|+|.|||.||+-+.-.+ -|-|| ...|..+
T Consensus 50 ~~EIldNavDe~~~~~~g~~~~I~V~i~------dgsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkFd~~y 123 (602)
T PHA02569 50 IDEIIDNSVDEAIRTNFKFANKIDVTIK------NNQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNFDDTN 123 (602)
T ss_pred eehhhhhhhhhhhccCCCCCcEEEEEEc------CCEEEEEECCCcccCCcccccccccccceEEEEEeeccccccCCcc
Confidence 56999999997654 2777888774 23699999999997643211 11133 2334321
Q ss_pred CcccCcccCcccccccccCCeEEEEeeecC
Q 003366 219 ANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 219 ~~~IGrfG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
..+-|+-|+|.+ +.-.|+..+.|.++..+
T Consensus 124 kvSGGlhGVG~s-vvNaLS~~~~V~v~~~~ 152 (602)
T PHA02569 124 RVTGGMNGVGSS-LTNFFSVLFIGETCDGK 152 (602)
T ss_pred eeeCCcCCccce-eeeccchhhheEEEcCC
Confidence 346899999976 44468899998886543
No 61
>PLN03237 DNA topoisomerase 2; Provisional
Probab=95.30 E-value=0.026 Score=72.13 Aligned_cols=85 Identities=20% Similarity=0.298 Sum_probs=58.6
Q ss_pred HHHHHHhccchhhhhC--CCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhh-------hcccc---ccccccC---C
Q 003366 155 GAFAELLDNSLDEVCN--GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRH-------CMSLG---YSAKSKA---A 219 (826)
Q Consensus 155 gAIAELIDNAiDA~~~--gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~-------~LsfG---~SsK~~~---~ 219 (826)
-.+-|+||||+|.... .++.|.|.+.. ....|+|.|||.||.-+ ++. -|.|| .++|..+ .
T Consensus 80 kifdEIldNAvDe~~r~g~~~~I~V~I~~----~~gsIsV~DnGRGIPV~-iH~~eg~~~pElIft~LhAGgkFdd~~yK 154 (1465)
T PLN03237 80 KIFDEILVNAADNKQRDPKMDSLRVVIDV----EQNLISVYNNGDGVPVE-IHQEEGVYVPEMIFGHLLTSSNYDDNEKK 154 (1465)
T ss_pred hhHHHHhhhhHhHHhhcCCCCEEEEEEEc----CCCEEEEEecCccccCC-CCCCCCCccceEEEEeeeccccCCCCcce
Confidence 5689999999997522 25777777743 23479999999999765 221 11233 3444432 2
Q ss_pred cccCcccCcccccccccCCeEEEEee
Q 003366 220 NTIGQYGNGFKTSTMRLGADVIVFSC 245 (826)
Q Consensus 220 ~~IGrfG~GfKsAsmrLG~~v~V~SK 245 (826)
.+-|+-|+|.+. .-.|...++|.++
T Consensus 155 vSGGlhGVGasv-vNaLS~~f~Vev~ 179 (1465)
T PLN03237 155 TTGGRNGYGAKL-TNIFSTEFVIETA 179 (1465)
T ss_pred eeccccccCccc-cccccCeeEEEEE
Confidence 468999999874 4458999999998
No 62
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=95.21 E-value=0.034 Score=66.89 Aligned_cols=88 Identities=16% Similarity=0.223 Sum_probs=61.2
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCccc
Q 003366 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (826)
.++..+|..||+||+.+.. ...|.|.+... ++...|.|.|||.||+++++.+.+...+..+ ...+..|+|+.
T Consensus 512 ~~l~~il~NLl~NAik~~~--~g~I~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~----~~~~g~GLGL~ 583 (921)
T PRK15347 512 LRLRQILVNLLGNAVKFTE--TGGIRLRVKRH--EQQLCFTVEDTGCGIDIQQQQQIFTPFYQAD----THSQGTGLGLT 583 (921)
T ss_pred HHHHHHHHHHHHHHhhcCC--CCCEEEEEEEc--CCEEEEEEEEcCCCCCHHHHHHHhcCcccCC----CCCCCCchHHH
Confidence 3466789999999999843 23466666443 3567899999999999999998875433322 12356788886
Q ss_pred ccc---cccCCeEEEEeee
Q 003366 231 TST---MRLGADVIVFSCC 246 (826)
Q Consensus 231 sAs---mrLG~~v~V~SK~ 246 (826)
.+- -.+|-.+.|.|..
T Consensus 584 i~~~~~~~~gG~i~i~s~~ 602 (921)
T PRK15347 584 IASSLAKMMGGELTLFSTP 602 (921)
T ss_pred HHHHHHHHcCCEEEEEecC
Confidence 432 1467778887764
No 63
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=95.16 E-value=0.023 Score=69.65 Aligned_cols=121 Identities=24% Similarity=0.273 Sum_probs=75.3
Q ss_pred CCCCCCCCCccccCCCccccccCchhhcccccccccHHHHHHHHhccchhhhhCC-CceEEEEEEEccCCCceEEEEEEC
Q 003366 117 DYEGAPSGGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIEDN 195 (826)
Q Consensus 117 ~y~~~~~~~~~~~~~~l~~~~v~p~fLhSNSTSH~wpFgAIAELIDNAiDA~~~g-At~V~Idi~~~~~~g~~~L~I~DN 195 (826)
+|++.... .-.++.+||.-|-..- -||.-.-..-.|-|+||||+|...++ |+.|.|.+.. ...|+|.||
T Consensus 99 ~Y~a~~I~----vLeGLEaVRkRPGMYI-Gst~~~GLhhLv~EIlDNSVDE~laG~~~~I~V~i~~-----DgsItV~Dn 168 (903)
T PTZ00109 99 EYDADDIV----VLEGLEAVRKRPGMYI-GNTDEKGLHQLLFEILDNSVDEYLAGECNKITVVLHK-----DGSVEISDN 168 (903)
T ss_pred CCChHhCe----ehhccHHHhcCCCcee-CCCCCCcceEEEEEEeeccchhhccCCCcEEEEEEcC-----CCeEEEEeC
Confidence 58765432 2368889998886542 12211111223569999999976554 6777777742 247999999
Q ss_pred CCCCCHHHHhh--------hcc-------ccccc------------------cc--------------c---C--CcccC
Q 003366 196 GGGMNPDKMRH--------CMS-------LGYSA------------------KS--------------K---A--ANTIG 223 (826)
Q Consensus 196 G~GMs~eeL~~--------~Ls-------fG~Ss------------------K~--------------~---~--~~~IG 223 (826)
|.||+-+.-.+ +|. |+... +. . . ..+-|
T Consensus 169 GRGIPvd~h~k~g~s~~E~VlT~LhAGGKF~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSGG 248 (903)
T PTZ00109 169 GRGIPCDVSEKTGKSGLETVLTVLHSGGKFQDTFPKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSSG 248 (903)
T ss_pred CccccccccccCCCcceeEEEEEeccCccccCcccccccccccccccccccccccccccccccccccccccCCcceecCc
Confidence 99997643221 111 22210 00 0 0 13679
Q ss_pred cccCcccccccccCCeEEEEeeecC
Q 003366 224 QYGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 224 rfG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
.-|+|.+ +.=.|+..+.|.+++.|
T Consensus 249 LHGVG~S-VVNALS~~l~VeV~RdG 272 (903)
T PTZ00109 249 LHGVGLS-VVNALSSFLKVDVFKGG 272 (903)
T ss_pred CCCccee-eeeeccCeEEEEEEECC
Confidence 9999975 44469999999999876
No 64
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.16 E-value=0.21 Score=58.72 Aligned_cols=81 Identities=35% Similarity=0.452 Sum_probs=65.3
Q ss_pred cchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---HHHHHH
Q 003366 719 LGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRERE---EENLRK 795 (826)
Q Consensus 719 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e---~~~lr~ 795 (826)
|.....+|++++..|++++.+++..|..+.++|..|..+.+++....+.+.+|.+.|..-.++-+.|-.+= -..|..
T Consensus 155 L~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~q 234 (546)
T PF07888_consen 155 LLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQ 234 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457789999999999999999999999999999999999999999999999999988888777663322 234555
Q ss_pred HHHH
Q 003366 796 KIKD 799 (826)
Q Consensus 796 kl~~ 799 (826)
|.++
T Consensus 235 k~~E 238 (546)
T PF07888_consen 235 KEKE 238 (546)
T ss_pred HHHH
Confidence 5533
No 65
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.05 E-value=0.24 Score=52.96 Aligned_cols=95 Identities=33% Similarity=0.464 Sum_probs=74.7
Q ss_pred ccchhhhhhhhhhhHHHHHHHHhHHhH------------HHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHH------
Q 003366 718 SLGANLGQLKQENHELKKRLEKKEGEL------------QEER----ERCRSLEAQLKVMQQTIEELNKEQESL------ 775 (826)
Q Consensus 718 ~~~~~~~~~~~e~~~~~~~~~~~~~~~------------~~e~----~~~~~l~~~~~~~~~~~~~~~keq~~l------ 775 (826)
+|+.-+.++..+..++++|+.+.|..+ .+|. ++..+|+.+|.++...++.+.++++.|
T Consensus 56 ~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~ 135 (239)
T COG1579 56 DLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLER 135 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345557788888889999998887764 4444 677788888877777777776666554
Q ss_pred -HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003366 776 -IDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIK 812 (826)
Q Consensus 776 -i~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~ 812 (826)
-.-|+|.|.+-+.|.+.++.+....++.+..|.++|+
T Consensus 136 ~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~ 173 (239)
T COG1579 136 LEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLD 173 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4568999999999999999999999999988888775
No 66
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=94.93 E-value=0.064 Score=64.03 Aligned_cols=92 Identities=17% Similarity=0.223 Sum_probs=62.9
Q ss_pred cHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhcccccccccc-CCcccCcccCccc
Q 003366 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSK-AANTIGQYGNGFK 230 (826)
Q Consensus 152 wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~-~~~~IGrfG~GfK 230 (826)
....++..||+||+++.. ...|.|.+.... ++.-.|.|.|||.||+++++.+++..-+..|.. .....+.-|+|+.
T Consensus 398 ~l~qvl~NLl~NAik~~~--~g~v~i~~~~~~-~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL~ 474 (779)
T PRK11091 398 RLRQILWNLISNAVKFTQ--QGGVTVRVRYEE-GDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGLA 474 (779)
T ss_pred HHHHHHHHHHHHHHHhCC--CCcEEEEEEEcc-CCEEEEEEEecCCCCCHHHHHHHHHHhhcccCCCCCCCCCCcchHHH
Confidence 455789999999999953 344666665432 345689999999999999999987654544321 1223455678875
Q ss_pred cc---ccccCCeEEEEeee
Q 003366 231 TS---TMRLGADVIVFSCC 246 (826)
Q Consensus 231 sA---smrLG~~v~V~SK~ 246 (826)
.+ .-..|-.+.|.|..
T Consensus 475 i~~~iv~~~gG~i~v~s~~ 493 (779)
T PRK11091 475 VSKRLAQAMGGDITVTSEE 493 (779)
T ss_pred HHHHHHHHcCCEEEEEecC
Confidence 32 22478888888874
No 67
>PLN03128 DNA topoisomerase 2; Provisional
Probab=94.83 E-value=0.041 Score=69.46 Aligned_cols=86 Identities=20% Similarity=0.266 Sum_probs=58.5
Q ss_pred HHHHHHhccchhhhh--CCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhh------hcccc---ccccccC---Cc
Q 003366 155 GAFAELLDNSLDEVC--NGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRH------CMSLG---YSAKSKA---AN 220 (826)
Q Consensus 155 gAIAELIDNAiDA~~--~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~------~LsfG---~SsK~~~---~~ 220 (826)
--+-|+||||+|... ..++.|.|.+.. ....|+|.|||.||+-+--.. -|-|| .+.|..+ ..
T Consensus 55 ki~dEIldNAvDe~~~~g~~~~I~V~i~~----~dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFdd~~ykv 130 (1135)
T PLN03128 55 KIFDEILVNAADNKQRDPSMDSLKVDIDV----EQNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFDDNEKKT 130 (1135)
T ss_pred HHHHHHHHHHHHHhhhcCCCcEEEEEEEc----CCCeEEEEecCccccCCCCCCCCCccceEEEEeeccccccCCcccee
Confidence 458899999999752 235777777743 134799999999997652211 11133 3444332 24
Q ss_pred ccCcccCcccccccccCCeEEEEee
Q 003366 221 TIGQYGNGFKTSTMRLGADVIVFSC 245 (826)
Q Consensus 221 ~IGrfG~GfKsAsmrLG~~v~V~SK 245 (826)
+-|+-|+|.+. .=.|+..+.|.++
T Consensus 131 SGGlhGvGasv-vNaLS~~f~Vev~ 154 (1135)
T PLN03128 131 TGGRNGYGAKL-ANIFSTEFTVETA 154 (1135)
T ss_pred eccccCCCCeE-EEeecCeEEEEEE
Confidence 68999999874 4458999999998
No 68
>PRK10490 sensor protein KdpD; Provisional
Probab=94.83 E-value=0.055 Score=66.77 Aligned_cols=91 Identities=16% Similarity=0.140 Sum_probs=61.9
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCccc
Q 003366 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (826)
.+...++..||+||+.+... ...|.|.+... ++.-.|.|.|||.||+++++.+.+...++.+. ....+-.|+|+.
T Consensus 777 ~~L~qVL~NLL~NAik~s~~-g~~I~I~~~~~--~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~--~~~~~G~GLGL~ 851 (895)
T PRK10490 777 PLFERVLINLLENAVKYAGA-QAEIGIDAHVE--GERLQLDVWDNGPGIPPGQEQLIFDKFARGNK--ESAIPGVGLGLA 851 (895)
T ss_pred HHHHHHHHHHHHHHHHhCCC-CCeEEEEEEEe--CCEEEEEEEECCCCCCHHHHHHhcCCCccCCC--CCCCCCccHHHH
Confidence 45667899999999998432 34566666433 35668999999999999999988764443321 122334678875
Q ss_pred cc---ccccCCeEEEEeee
Q 003366 231 TS---TMRLGADVIVFSCC 246 (826)
Q Consensus 231 sA---smrLG~~v~V~SK~ 246 (826)
.+ .-..|-.+.+.|..
T Consensus 852 Ivk~ive~hGG~I~v~s~~ 870 (895)
T PRK10490 852 ICRAIVEVHGGTIWAENRP 870 (895)
T ss_pred HHHHHHHHcCCEEEEEECC
Confidence 32 12467888888764
No 69
>PRK10547 chemotaxis protein CheA; Provisional
Probab=94.83 E-value=0.089 Score=63.35 Aligned_cols=89 Identities=19% Similarity=0.331 Sum_probs=59.2
Q ss_pred HHHHHHhccchhhhhC-----------CCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhh-----------------
Q 003366 155 GAFAELLDNSLDEVCN-----------GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRH----------------- 206 (826)
Q Consensus 155 gAIAELIDNAiDA~~~-----------gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~----------------- 206 (826)
.+|..||.||+|+-.. ....|.|..... ++.-.|.|.|||.||+++.+..
T Consensus 388 dpL~hLirNAidHgie~p~~R~~~gkp~~G~I~l~a~~~--~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ls~~e 465 (670)
T PRK10547 388 DPLTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEHQ--GGNICIEVTDDGAGLNRERILAKAASQGLAVSENMSDEE 465 (670)
T ss_pred HHHHHHHHHHHHhhccchhhHHhcCCCCCCceEEEEEEc--CCEEEEEEEeCCCCCCHHHHHHHHHHcCCCccccCCHHH
Confidence 3456899999998311 012466666432 4556799999999999987752
Q ss_pred ----hccccccccccCCcccCcccCccc---ccccccCCeEEEEeee
Q 003366 207 ----CMSLGYSAKSKAANTIGQYGNGFK---TSTMRLGADVIVFSCC 246 (826)
Q Consensus 207 ----~LsfG~SsK~~~~~~IGrfG~GfK---sAsmrLG~~v~V~SK~ 246 (826)
.+..|++.+.. ...+.-.|+|+. ...-.+|-.+.|.|..
T Consensus 466 ~~~lIF~pgfst~~~-~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~ 511 (670)
T PRK10547 466 VGMLIFAPGFSTAEQ-VTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQ 511 (670)
T ss_pred HHHHhhcCCcccccc-cccCCCCchhHHHHHHHHHHcCCEEEEEecC
Confidence 33456776532 233455699985 3333688999999975
No 70
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=94.79 E-value=0.06 Score=65.08 Aligned_cols=89 Identities=18% Similarity=0.217 Sum_probs=62.3
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCccc
Q 003366 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (826)
.+...++..||+||+.+.. ...|.|.+... ++...|.|.|||.||+++++.+.+...+... ...|..|+|+.
T Consensus 560 ~~l~qil~NLl~NAik~~~--~g~I~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~----~~~~g~GLGL~ 631 (914)
T PRK11466 560 RRIRQVITNLLSNALRFTD--EGSIVLRSRTD--GEQWLVEVEDSGCGIDPAKLAEIFQPFVQVS----GKRGGTGLGLT 631 (914)
T ss_pred HHHHHHHHHHHHHHHHhCC--CCeEEEEEEEc--CCEEEEEEEECCCCCCHHHHHHHhchhhcCC----CCCCCCcccHH
Confidence 4566789999999999843 34567766543 3456799999999999999998875433322 12356788876
Q ss_pred cc---ccccCCeEEEEeeec
Q 003366 231 TS---TMRLGADVIVFSCCC 247 (826)
Q Consensus 231 sA---smrLG~~v~V~SK~~ 247 (826)
.+ .-.+|-.+.|-|...
T Consensus 632 i~~~l~~~~gG~i~v~s~~~ 651 (914)
T PRK11466 632 ISSRLAQAMGGELSATSTPE 651 (914)
T ss_pred HHHHHHHHcCCEEEEEecCC
Confidence 32 225778888888643
No 71
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=94.73 E-value=0.095 Score=49.21 Aligned_cols=85 Identities=22% Similarity=0.230 Sum_probs=51.6
Q ss_pred HHHHHHHHhccchhhhh--CCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCccc
Q 003366 153 ALGAFAELLDNSLDEVC--NGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (826)
Q Consensus 153 pFgAIAELIDNAiDA~~--~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (826)
+-.|+.||+.||+.+.- .....|.|.+... ++...|.|.|+|.||+. +..++...++.+. ..+..|+|+.
T Consensus 40 l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~--~~~~~i~I~D~G~gi~~--~~~~~~~~~~~~~----~~~~~GlGL~ 111 (137)
T TIGR01925 40 IKTAVSEAVTNAIIHGYEENCEGVVYISATIE--DHEVYITVRDEGIGIEN--LEEAREPLYTSKP----ELERSGMGFT 111 (137)
T ss_pred HHHHHHHHHHHHHHhccCCCCCcEEEEEEEEe--CCEEEEEEEEcCCCcCc--hhHhhCCCcccCC----CCCCCcccHH
Confidence 34689999999997511 0124567766543 35678999999999973 3444433333221 2234677875
Q ss_pred ccccccCCeEEEEeee
Q 003366 231 TSTMRLGADVIVFSCC 246 (826)
Q Consensus 231 sAsmrLG~~v~V~SK~ 246 (826)
.. -+++.++.+.+..
T Consensus 112 lv-~~~~~~l~~~~~~ 126 (137)
T TIGR01925 112 VM-ENFMDDVSVDSEK 126 (137)
T ss_pred HH-HHhCCcEEEEECC
Confidence 42 2456677776653
No 72
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=94.73 E-value=0.22 Score=58.90 Aligned_cols=87 Identities=26% Similarity=0.421 Sum_probs=51.7
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-----hhhHHHHHHHHHHHHHHHHHHHH
Q 003366 733 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIF-AEER-----DRREREEENLRKKIKDASDTIQD 806 (826)
Q Consensus 733 ~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f-~eer-----~rr~~e~~~lr~kl~~a~~~i~~ 806 (826)
..+++.+.++-+++=...++.|+..++++++.||.|..+-+.+..-. .+.| ..+|.+-+.|+++|++....|.+
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~ 499 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEE 499 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444333334444555555555555555544444443221 1222 22566678999999999999999
Q ss_pred HHHHHhhhhhcCC
Q 003366 807 LLDKIKLLEKMKT 819 (826)
Q Consensus 807 ~~~~~~~~~~~~~ 819 (826)
|-.+|+.+++|..
T Consensus 500 L~~~l~~l~k~~~ 512 (652)
T COG2433 500 LERKLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998887753
No 73
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=94.69 E-value=0.047 Score=53.80 Aligned_cols=85 Identities=18% Similarity=0.196 Sum_probs=52.9
Q ss_pred HHHHHHhccchhhhhCCC--ceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCccccc
Q 003366 155 GAFAELLDNSLDEVCNGA--TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTS 232 (826)
Q Consensus 155 gAIAELIDNAiDA~~~gA--t~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfKsA 232 (826)
-|+.|++-||+.....+. ..|.|.+... ++...|.|.|+|.||+++.+...+.+.+..+.. .....-|.|+...
T Consensus 45 lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~--~~~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~~--~~~~~~G~GL~li 120 (161)
T PRK04069 45 IAVSEACTNAVQHAYKEDEVGEIHIRFEIY--EDRLEIVVADNGVSFDYETLKSKLGPYDISKPI--EDLREGGLGLFLI 120 (161)
T ss_pred HHHHHHHHHHHHhccCCCCCCeEEEEEEEE--CCEEEEEEEECCcCCChHHhccccCCCCCCCcc--cccCCCceeHHHH
Confidence 489999999999832211 3466666543 467889999999999998887655432221111 1111236777543
Q ss_pred ccccCCeEEEEe
Q 003366 233 TMRLGADVIVFS 244 (826)
Q Consensus 233 smrLG~~v~V~S 244 (826)
- +|.+++.+.+
T Consensus 121 ~-~l~d~v~~~~ 131 (161)
T PRK04069 121 E-TLMDDVTVYK 131 (161)
T ss_pred H-HHHHhEEEEc
Confidence 3 4667776664
No 74
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=94.69 E-value=0.071 Score=64.68 Aligned_cols=90 Identities=17% Similarity=0.158 Sum_probs=61.1
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCc-eEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCcc
Q 003366 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGS-RMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGF 229 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~-~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~Gf 229 (826)
.+...+|..||+||+.+.. ...|.|.+.... +. ..|.|.|+|.||+++++.+.+..-+..+ .....|..|+||
T Consensus 578 ~~l~~il~nLi~NAik~~~--~g~i~i~~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~--~~~~~~g~GLGL 651 (968)
T TIGR02956 578 PRIRQVLINLVGNAIKFTD--RGSVVLRVSLND--DSSLLFEVEDTGCGIAEEEQATLFDAFTQAD--GRRRSGGTGLGL 651 (968)
T ss_pred HHHHHHHHHHHHHHHhhCC--CCeEEEEEEEcC--CCeEEEEEEeCCCCCCHHHHHHHHhhhhccC--CCCCCCCccHHH
Confidence 4566789999999999843 345667665432 34 6899999999999999998775222222 122335678888
Q ss_pred ccc---ccccCCeEEEEeee
Q 003366 230 KTS---TMRLGADVIVFSCC 246 (826)
Q Consensus 230 KsA---smrLG~~v~V~SK~ 246 (826)
..+ .-.+|-.+.|.|..
T Consensus 652 ~i~~~l~~~~gG~i~~~s~~ 671 (968)
T TIGR02956 652 AISQRLVEAMDGELGVESEL 671 (968)
T ss_pred HHHHHHHHHcCCEEEEEecC
Confidence 632 22567788887764
No 75
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.64 E-value=0.1 Score=63.04 Aligned_cols=39 Identities=31% Similarity=0.509 Sum_probs=22.7
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHH
Q 003366 720 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQL 758 (826)
Q Consensus 720 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~ 758 (826)
...|.+|++||.+|..||..+.-..++|+.-..+||.+|
T Consensus 459 k~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL 497 (697)
T PF09726_consen 459 KSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRL 497 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334666777777777766666655555554444444444
No 76
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=94.42 E-value=0.079 Score=65.57 Aligned_cols=92 Identities=12% Similarity=0.122 Sum_probs=61.5
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCccc
Q 003366 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (826)
...-.+|..||+||+.+.. ...|.|.+... ++...|.|.|+|.||+++++.+.+...+..........+-.|+||.
T Consensus 561 ~~L~qvl~NLl~NAik~t~--~G~I~I~v~~~--~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~~~~~~~GtGLGL~ 636 (924)
T PRK10841 561 MRLQQVISNLLSNAIKFTD--TGCIVLHVRVD--GDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLA 636 (924)
T ss_pred HHHHHHHHHHHHHHHhhCC--CCcEEEEEEEe--CCEEEEEEEEcCcCCCHHHHHHHhcccccCCCCCCCCCCCeehhHH
Confidence 3455789999999999853 23466655432 3556799999999999999998775333222111123345788886
Q ss_pred ccc---cccCCeEEEEeee
Q 003366 231 TST---MRLGADVIVFSCC 246 (826)
Q Consensus 231 sAs---mrLG~~v~V~SK~ 246 (826)
.+. -.+|-.+.|.|..
T Consensus 637 I~k~lv~~~gG~I~v~S~~ 655 (924)
T PRK10841 637 ICEKLINMMDGDISVDSEP 655 (924)
T ss_pred HHHHHHHHCCCEEEEEEcC
Confidence 432 2577888888864
No 77
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=94.32 E-value=0.063 Score=63.29 Aligned_cols=59 Identities=25% Similarity=0.446 Sum_probs=45.2
Q ss_pred HHHHHHhccchhhhhCC-CceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhcccccccc
Q 003366 155 GAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAK 215 (826)
Q Consensus 155 gAIAELIDNAiDA~~~g-At~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK 215 (826)
..+-.||.||+||.... ...|+|.... .++.-.|.|.|||+|+.++-+.+++..=+.+|
T Consensus 500 QVLvNLl~NALDA~~~~~~~~i~i~~~~--~~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK 559 (603)
T COG4191 500 QVLVNLLQNALDAMAGQEDRRLSIRAQR--EGGQVVLTVRDNGPGIAPEALPHLFEPFFTTK 559 (603)
T ss_pred HHHHHHHHHHHHHhcCCCCCeeEEEEEe--cCCeEEEEEccCCCCCCHHHHHhhcCCccccC
Confidence 46889999999997532 2456676654 35778899999999999999999876444445
No 78
>PRK13557 histidine kinase; Provisional
Probab=94.30 E-value=0.12 Score=57.44 Aligned_cols=90 Identities=20% Similarity=0.193 Sum_probs=60.3
Q ss_pred cHHHHHHHHhccchhhhhCCCceEEEEEEEc-------------cCCCceEEEEEECCCCCCHHHHhhhccccccccccC
Q 003366 152 WALGAFAELLDNSLDEVCNGATYSNIDMLIN-------------RKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKA 218 (826)
Q Consensus 152 wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~-------------~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~ 218 (826)
..-.++..|+.||+++... ...|.|..... ..++...|.|.|||.||+++.+.+++...++.+.
T Consensus 277 ~l~~vl~nll~NA~~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~-- 353 (540)
T PRK13557 277 QAEVALLNVLINARDAMPE-GGRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKE-- 353 (540)
T ss_pred HHHHHHHHHHHHHHHhccc-CCeEEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCC--
Confidence 3456799999999998542 23455544311 0123457999999999999999998876555442
Q ss_pred CcccCcccCcccc---cccccCCeEEEEeee
Q 003366 219 ANTIGQYGNGFKT---STMRLGADVIVFSCC 246 (826)
Q Consensus 219 ~~~IGrfG~GfKs---AsmrLG~~v~V~SK~ 246 (826)
..+..|+||.. ..-.+|-.+.|.+..
T Consensus 354 --~~~g~GlGL~i~~~~v~~~gG~i~~~s~~ 382 (540)
T PRK13557 354 --EGKGTGLGLSMVYGFAKQSGGAVRIYSEV 382 (540)
T ss_pred --CCCCCCccHHHHHHHHHHCCCEEEEEecC
Confidence 22456778753 233578889988864
No 79
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=94.29 E-value=0.092 Score=65.03 Aligned_cols=94 Identities=12% Similarity=0.050 Sum_probs=60.8
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccC-CCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCcc
Q 003366 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRK-DGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGF 229 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~-~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~Gf 229 (826)
.....++..||.||+.+... ..|.|.+..... ++.-.|.|.|+|.||+++++.+.+..-+..+.. ...-+--|+||
T Consensus 564 ~~L~QVL~NLL~NAik~t~~--G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~~-~~~~~GtGLGL 640 (894)
T PRK10618 564 DALRKILLLLLNYAITTTAY--GKITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLHFPFLNQTQG-DRYGKASGLTF 640 (894)
T ss_pred HHHHHHHHHHHHHHHHhCCC--CeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhcCccccCCCC-CCCCCCcChhH
Confidence 34557899999999998542 346666543221 244679999999999999999976533333321 11123457776
Q ss_pred ccc---ccccCCeEEEEeeec
Q 003366 230 KTS---TMRLGADVIVFSCCC 247 (826)
Q Consensus 230 KsA---smrLG~~v~V~SK~~ 247 (826)
..+ .-.+|-.+.|-|...
T Consensus 641 aI~k~Lve~~GG~I~v~S~~g 661 (894)
T PRK10618 641 FLCNQLCRKLGGHLTIKSREG 661 (894)
T ss_pred HHHHHHHHHcCCEEEEEECCC
Confidence 432 225788899988753
No 80
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=94.05 E-value=0.14 Score=64.18 Aligned_cols=94 Identities=15% Similarity=0.138 Sum_probs=58.8
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccC-CCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCcc
Q 003366 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRK-DGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGF 229 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~-~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~Gf 229 (826)
.....+|..||+||+++...+...|.+....... .....|.|.|||.||+++++.+++...+..+. ...-+..|+||
T Consensus 827 ~~l~qvl~NLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~--~~~~~G~GLGL 904 (1197)
T PRK09959 827 QAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSA--GRQQTGSGLGL 904 (1197)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhhcccccccc--CCCCCCcCchH
Confidence 3566789999999999954332223332211111 12245899999999999999998764443321 11234578888
Q ss_pred ccc---ccccCCeEEEEeee
Q 003366 230 KTS---TMRLGADVIVFSCC 246 (826)
Q Consensus 230 KsA---smrLG~~v~V~SK~ 246 (826)
..+ .-.+|-.+.|.|..
T Consensus 905 ~i~~~iv~~~gG~i~v~s~~ 924 (1197)
T PRK09959 905 MICKELIKNMQGDLSLESHP 924 (1197)
T ss_pred HHHHHHHHHcCCEEEEEeCC
Confidence 642 22477888888864
No 81
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=93.94 E-value=0.12 Score=51.09 Aligned_cols=85 Identities=15% Similarity=0.221 Sum_probs=53.4
Q ss_pred HHHHHHhccchhhhhCC--CceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCccccc
Q 003366 155 GAFAELLDNSLDEVCNG--ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTS 232 (826)
Q Consensus 155 gAIAELIDNAiDA~~~g--At~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfKsA 232 (826)
-|+.||+.||+...-.+ ...|.|.+... ++...|.|.|+|.||+++.+......-... ........-|.|+...
T Consensus 45 lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~--~~~l~i~V~D~G~gfd~~~~~~~~~~~~~~--~~~~~~~~~G~GL~Li 120 (159)
T TIGR01924 45 IAVSEACTNAVKHAYKEGENGEIGISFHIY--EDRLEIIVSDQGDSFDMDTFKQSLGPYDGS--EPIDDLREGGLGLFLI 120 (159)
T ss_pred HHHHHHHHHHHHhccCCCCCCeEEEEEEEe--CCEEEEEEEEcccccCchhhccccCCCCCC--CCcccCCCCccCHHHH
Confidence 48999999999983211 13577776553 466789999999999998876543211111 1111122337777643
Q ss_pred ccccCCeEEEEe
Q 003366 233 TMRLGADVIVFS 244 (826)
Q Consensus 233 smrLG~~v~V~S 244 (826)
- .|.+++.+.+
T Consensus 121 ~-~L~D~v~~~~ 131 (159)
T TIGR01924 121 E-TLMDEVEVYE 131 (159)
T ss_pred H-HhccEEEEEe
Confidence 3 5778887765
No 82
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=93.83 E-value=0.14 Score=47.30 Aligned_cols=80 Identities=18% Similarity=0.249 Sum_probs=53.0
Q ss_pred HHHHHHHHhccchhhhhCCC--ceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCccc
Q 003366 153 ALGAFAELLDNSLDEVCNGA--TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (826)
Q Consensus 153 pFgAIAELIDNAiDA~~~gA--t~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (826)
..-|+.|++-||+.....+. ..|.|.+... .+.-.|.|.|+|.|+++..+.....-+. .....-|.|+.
T Consensus 32 ~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~--~~~l~i~v~D~G~~~d~~~~~~~~~~~~-------~~~~~~G~Gl~ 102 (125)
T PF13581_consen 32 LELAVSEALTNAVEHGYPGDPDGPVDVRLEVD--PDRLRISVRDNGPGFDPEQLPQPDPWEP-------DSLREGGRGLF 102 (125)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEc--CCEEEEEEEECCCCCChhhccCcccccC-------CCCCCCCcCHH
Confidence 34689999999999843322 3466665443 4667899999999999997765432111 23334466765
Q ss_pred ccccccCCeEEE
Q 003366 231 TSTMRLGADVIV 242 (826)
Q Consensus 231 sAsmrLG~~v~V 242 (826)
... ++++++.+
T Consensus 103 li~-~l~D~~~~ 113 (125)
T PF13581_consen 103 LIR-SLMDEVDY 113 (125)
T ss_pred HHH-HHHcEEEE
Confidence 322 57888888
No 83
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=93.79 E-value=0.14 Score=59.07 Aligned_cols=70 Identities=26% Similarity=0.363 Sum_probs=49.6
Q ss_pred cHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCcccc
Q 003366 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (826)
Q Consensus 152 wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfKs 231 (826)
-.+.++.|+++||+.+. .+..|.|.+... ++.-.|.|.|||.||++++. ..|+|+..
T Consensus 410 ~L~ril~nlL~NAiKha--~~~~I~I~l~~~--~~~i~l~V~DnG~Gi~~~~~-------------------~~GLGL~i 466 (495)
T PRK11644 410 TLFRVCQEGLNNIVKHA--DASAVTLQGWQQ--DERLMLVIEDDGSGLPPGSG-------------------QQGFGLRG 466 (495)
T ss_pred HHHHHHHHHHHHHHHhC--CCCEEEEEEEEc--CCEEEEEEEECCCCCCcCCC-------------------CCCCcHHH
Confidence 35568899999999983 356677777543 35678999999999987531 23777753
Q ss_pred c---ccccCCeEEEEe
Q 003366 232 S---TMRLGADVIVFS 244 (826)
Q Consensus 232 A---smrLG~~v~V~S 244 (826)
+ .-.+|-++.+.|
T Consensus 467 vr~iv~~~GG~i~v~S 482 (495)
T PRK11644 467 MRERVTALGGTLTISC 482 (495)
T ss_pred HHHHHHHcCCEEEEEc
Confidence 2 225777888877
No 84
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.72 E-value=1.6 Score=42.36 Aligned_cols=94 Identities=27% Similarity=0.380 Sum_probs=77.4
Q ss_pred hhhhhhhhhhhHHHHHHHHhHHhHHHHH-------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 003366 721 ANLGQLKQENHELKKRLEKKEGELQEER-------ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENL 793 (826)
Q Consensus 721 ~~~~~~~~e~~~~~~~~~~~~~~~~~e~-------~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~l 793 (826)
.-+..++++.....++....+....+|+ .....|.++++.++.++.++..+=++....+.+.+..=..+++-|
T Consensus 24 ~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~l 103 (132)
T PF07926_consen 24 EQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQL 103 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3456666666777777777777777777 667788889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 003366 794 RKKIKDASDTIQDLLDKIKLL 814 (826)
Q Consensus 794 r~kl~~a~~~i~~~~~~~~~~ 814 (826)
.+-+.++-..|.||-+|=+.|
T Consensus 104 e~e~~~~~~r~~dL~~QN~lL 124 (132)
T PF07926_consen 104 EKELSELEQRIEDLNEQNKLL 124 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988774443
No 85
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=93.28 E-value=2.8 Score=48.01 Aligned_cols=76 Identities=33% Similarity=0.397 Sum_probs=42.3
Q ss_pred hhhhhhhhhHHHHHHHHhHHh-----------HHHHHHhhhcHHHHHHHHHH--HHHHHHHHHH-----HHHHHHHHHHh
Q 003366 723 LGQLKQENHELKKRLEKKEGE-----------LQEERERCRSLEAQLKVMQQ--TIEELNKEQE-----SLIDIFAEERD 784 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~-----------~~~e~~~~~~l~~~~~~~~~--~~~~~~keq~-----~li~~f~eer~ 784 (826)
+..++++...|.+.+.++++. |+.|+.|+..||+||.|+-+ |-|-.|=.|+ .=++--+.||.
T Consensus 221 l~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRa 300 (395)
T PF10267_consen 221 LREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERA 300 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444444444455554443 57777889999999977655 3333333333 23455777886
Q ss_pred hhHHHH-HHHHHHHH
Q 003366 785 RREREE-ENLRKKIK 798 (826)
Q Consensus 785 rr~~e~-~~lr~kl~ 798 (826)
|-=+|. |+...|+.
T Consensus 301 Rdi~E~~Es~qtRis 315 (395)
T PF10267_consen 301 RDIWEVMESCQTRIS 315 (395)
T ss_pred hHHHHHHHHHHHHHH
Confidence 543332 44444443
No 86
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=93.15 E-value=6.1 Score=45.16 Aligned_cols=67 Identities=34% Similarity=0.410 Sum_probs=43.5
Q ss_pred hhhhhhhhhHHHHHHHHhHHh------------------HHHHHHhhhcHHHHHHHHH----HHHHHHHHHHHHH---HH
Q 003366 723 LGQLKQENHELKKRLEKKEGE------------------LQEERERCRSLEAQLKVMQ----QTIEELNKEQESL---ID 777 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~------------------~~~e~~~~~~l~~~~~~~~----~~~~~~~keq~~l---i~ 777 (826)
+..+.+|..|.|+-...++++ ||.|+=||..||+||-++- ..|-.|+.||.+. |+
T Consensus 262 l~aileeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasmeerva 341 (455)
T KOG3850|consen 262 LDAILEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASMEERVA 341 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666665554444444 5888888999999996553 2566666677654 56
Q ss_pred HHHHHHhhhHHH
Q 003366 778 IFAEERDRRERE 789 (826)
Q Consensus 778 ~f~eer~rr~~e 789 (826)
--+-||.|-=||
T Consensus 342 YQsyERaRdIqE 353 (455)
T KOG3850|consen 342 YQSYERARDIQE 353 (455)
T ss_pred HHHHHHHHHHHH
Confidence 667788764444
No 87
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=93.03 E-value=1.1 Score=47.42 Aligned_cols=47 Identities=34% Similarity=0.581 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003366 767 ELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKL 813 (826)
Q Consensus 767 ~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~ 813 (826)
++-++-..|..+|-+||.-|.+.|+++.+||.+....|++-++.=+.
T Consensus 125 ~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~~~i~~Ek~ 171 (247)
T PF06705_consen 125 ELVRELNELQEAFENERNEREEREENILKRLEEEENRLQEKIEKEKN 171 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556677889999999999999999999999999998777765443
No 88
>PRK03660 anti-sigma F factor; Provisional
Probab=93.01 E-value=0.31 Score=46.18 Aligned_cols=83 Identities=20% Similarity=0.279 Sum_probs=49.4
Q ss_pred HHHHHHHhccchhhhhCC-C-ceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCcccc
Q 003366 154 LGAFAELLDNSLDEVCNG-A-TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (826)
Q Consensus 154 FgAIAELIDNAiDA~~~g-A-t~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfKs 231 (826)
--|+.||+.||+...... . ..|.|.+... ++...+.|.|+|.||++ +...+...++.+. .-+.-|+|+..
T Consensus 41 ~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~--~~~l~i~I~D~G~g~~~--~~~~~~~~~~~~~----~~~~~GlGL~i 112 (146)
T PRK03660 41 KTAVSEAVTNAIIHGYENNPDGVVYIEVEIE--EEELEITVRDEGKGIED--IEEAMQPLYTTKP----ELERSGMGFTV 112 (146)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEEEEC--CCEEEEEEEEccCCCCh--HHHhhCCCcccCC----CCCCccccHHH
Confidence 458999999999652111 1 3466665432 35667999999999986 3334433332221 11235888864
Q ss_pred cccccCCeEEEEee
Q 003366 232 STMRLGADVIVFSC 245 (826)
Q Consensus 232 AsmrLG~~v~V~SK 245 (826)
+. +++..+.+-+.
T Consensus 113 ~~-~~~~~i~~~~~ 125 (146)
T PRK03660 113 ME-SFMDEVEVESE 125 (146)
T ss_pred HH-HhCCeEEEEec
Confidence 33 46777766554
No 89
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=92.39 E-value=0.21 Score=58.59 Aligned_cols=74 Identities=27% Similarity=0.397 Sum_probs=57.8
Q ss_pred HHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCcccc-cc
Q 003366 155 GAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT-ST 233 (826)
Q Consensus 155 gAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfKs-As 233 (826)
--|+|-+.||+-.. .|+.|+|.+..+. |...+.|.|||+|++.. ....|.||+-.-- =+
T Consensus 484 qIvREAlsNa~KHa--~As~i~V~~~~~~--g~~~~~VeDnG~Gi~~~----------------~e~~gHyGL~IM~ERA 543 (574)
T COG3850 484 QIVREALSNAIKHA--QASEIKVTVSQND--GQVTLTVEDNGVGIDEA----------------AEPSGHYGLNIMRERA 543 (574)
T ss_pred HHHHHHHHHHHHhc--ccCeEEEEEEecC--CeEEEEEeeCCcCCCCc----------------cCCCCCcchHHHHHHH
Confidence 46999999999973 5899999987753 78899999999999876 2356899976521 12
Q ss_pred cccCCeEEEEeeecC
Q 003366 234 MRLGADVIVFSCCCG 248 (826)
Q Consensus 234 mrLG~~v~V~SK~~g 248 (826)
-+|+..+.|-.|..|
T Consensus 544 ~~L~~~L~i~~~~~g 558 (574)
T COG3850 544 QRLGGQLRIRRREGG 558 (574)
T ss_pred HHhcCeEEEeecCCC
Confidence 268999999988654
No 90
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.19 E-value=1.3 Score=43.45 Aligned_cols=72 Identities=29% Similarity=0.492 Sum_probs=36.9
Q ss_pred hhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhHHHHHHHHHHHH
Q 003366 727 KQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLI-------DIFAEERDRREREEENLRKKIK 798 (826)
Q Consensus 727 ~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li-------~~f~eer~rr~~e~~~lr~kl~ 798 (826)
+..+..|++++...|-++..-..+.+.|+.++..++.++.....|-..|. --+.-|..|+|+|-+.|+++|.
T Consensus 72 ~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 72 QNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333333333333333333335556666666555555544444433333 2355677777777777776663
No 91
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=91.79 E-value=2.9 Score=42.08 Aligned_cols=64 Identities=25% Similarity=0.399 Sum_probs=32.1
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 720 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEER 783 (826)
Q Consensus 720 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer 783 (826)
...+.+|.+|...+.+++...+..+....+....+.+.++.++.++..++...+.+...|.+=+
T Consensus 87 ~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 87 QQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666555444433333334444444444444444444444444333
No 92
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=91.53 E-value=0.31 Score=55.11 Aligned_cols=88 Identities=20% Similarity=0.358 Sum_probs=61.8
Q ss_pred HHHHHhccchhhhhCC-------CceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccC------Cccc
Q 003366 156 AFAELLDNSLDEVCNG-------ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKA------ANTI 222 (826)
Q Consensus 156 AIAELIDNAiDA~~~g-------At~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~------~~~I 222 (826)
.+-||..||+-|.... -..|.|.+..+ +....|.|.|-|+|++++++..+++|++|.-... ...+
T Consensus 264 mlfElfKNamrATve~h~~~~~~~ppI~V~V~~g--deDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d~~~~~pl 341 (414)
T KOG0787|consen 264 MLFELFKNAMRATVEHHGDDGDELPPIKVTVAKG--DEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSDNNRTAPL 341 (414)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCeEEEEecC--CcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCCCCCcCcc
Confidence 6899999999997541 12366666543 3567899999999999999999999999865321 2356
Q ss_pred CcccCccccccc---ccCCeEEEEee
Q 003366 223 GQYGNGFKTSTM---RLGADVIVFSC 245 (826)
Q Consensus 223 GrfG~GfKsAsm---rLG~~v~V~SK 245 (826)
--||-|+-.+-. ..|-++-+.|-
T Consensus 342 aGfG~GLPisrlYa~yf~Gdl~L~Sl 367 (414)
T KOG0787|consen 342 AGFGFGLPISRLYARYFGGDLKLQSL 367 (414)
T ss_pred cccccCCcHHHHHHHHhCCCeeEEee
Confidence 677877753221 24455556665
No 93
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=91.51 E-value=0.17 Score=57.70 Aligned_cols=81 Identities=20% Similarity=0.291 Sum_probs=51.3
Q ss_pred HHHHHhccchhhhhC-CCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCccccccc
Q 003366 156 AFAELLDNSLDEVCN-GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTSTM 234 (826)
Q Consensus 156 AIAELIDNAiDA~~~-gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfKsAsm 234 (826)
.|-=|||||+-|... .....+|.+.....++.-.+.|.|||.||++..+....+-|..+ -|+|+...--
T Consensus 354 ~lqpLvENAi~hgi~~~~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~~~~~~~~~r----------~giGL~Nv~~ 423 (456)
T COG2972 354 VLQPLVENAIEHGIEPKRPGGSIAISAKKQDDVIQISISDNGPGIDEEKLEGLSTKGENR----------SGIGLSNVKE 423 (456)
T ss_pred HHhHHHHHHHHHhcccCCCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHHHHHhhccCc----------ccccHHHHHH
Confidence 578899999998421 12234555544434567889999999999999888544222111 4888876554
Q ss_pred ccC----C-eEEEEeee
Q 003366 235 RLG----A-DVIVFSCC 246 (826)
Q Consensus 235 rLG----~-~v~V~SK~ 246 (826)
|+. . .+.+.|+.
T Consensus 424 rl~~~~g~~~~~i~s~~ 440 (456)
T COG2972 424 RLKLYFGEPGLSIDSQP 440 (456)
T ss_pred HHHHeeCCcceeEeecC
Confidence 443 3 24455554
No 94
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=91.39 E-value=0.26 Score=53.96 Aligned_cols=74 Identities=27% Similarity=0.334 Sum_probs=55.7
Q ss_pred cccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCcc
Q 003366 150 HKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGF 229 (826)
Q Consensus 150 H~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~Gf 229 (826)
..-.|-++.|.|-|++-.- +|+.|.|.+... ++.-.|.|.|||.|.+.+... | |.|+
T Consensus 277 e~~l~rivQEaltN~~rHa--~A~~v~V~l~~~--~~~l~l~V~DnG~Gf~~~~~~-----------------~--~~GL 333 (365)
T COG4585 277 EDALFRIVQEALTNAIRHA--QATEVRVTLERT--DDELRLEVIDNGVGFDPDKEG-----------------G--GFGL 333 (365)
T ss_pred HHHHHHHHHHHHHHHHhcc--CCceEEEEEEEc--CCEEEEEEEECCcCCCccccC-----------------C--Ccch
Confidence 3557788999999999983 689999988764 456899999999999987642 1 3344
Q ss_pred c---ccccccCCeEEEEeee
Q 003366 230 K---TSTMRLGADVIVFSCC 246 (826)
Q Consensus 230 K---sAsmrLG~~v~V~SK~ 246 (826)
+ -=...+|-.+.|.|..
T Consensus 334 ~~mreRv~~lgG~l~i~S~~ 353 (365)
T COG4585 334 LGMRERVEALGGTLTIDSAP 353 (365)
T ss_pred hhHHHHHHHcCCEEEEEecC
Confidence 3 2233588899999986
No 95
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=91.23 E-value=0.27 Score=56.88 Aligned_cols=75 Identities=21% Similarity=0.195 Sum_probs=53.0
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCccc
Q 003366 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (826)
.+.+.+|.|+|.||+.+. .+..|.|.+... ++...|.|.|||.||+++.- + .-|+|+.
T Consensus 468 ~~l~~il~ell~NA~kha--~a~~i~V~~~~~--~~~~~l~V~D~G~Gi~~~~~----------~--------~~glGL~ 525 (569)
T PRK10600 468 IHLLQIAREALSNALKHA--QASEVVVTVAQN--QNQVKLSVQDNGCGVPENAE----------R--------SNHYGLI 525 (569)
T ss_pred HHHHHHHHHHHHHHHHhC--CCCeEEEEEEEc--CCEEEEEEEECCCCCCcccc----------C--------CCCccHH
Confidence 457788999999999973 356777777543 35678999999999998631 0 1255654
Q ss_pred c---cccccCCeEEEEeeec
Q 003366 231 T---STMRLGADVIVFSCCC 247 (826)
Q Consensus 231 s---AsmrLG~~v~V~SK~~ 247 (826)
. -.-++|..+.|.+...
T Consensus 526 i~~~~~~~lgG~l~i~s~~~ 545 (569)
T PRK10600 526 IMRDRAQSLRGDCRVRRRES 545 (569)
T ss_pred HHHHHHHHcCCEEEEEECCC
Confidence 2 2225888999888753
No 96
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=91.08 E-value=1.3 Score=47.91 Aligned_cols=100 Identities=18% Similarity=0.288 Sum_probs=73.8
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHHH------------hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Q 003366 720 GANLGQLKQENHELKKRLEKKEGELQEERE------------RCRSLEAQLKVMQQTIEELNKEQESLIDIFA----EER 783 (826)
Q Consensus 720 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~------------~~~~l~~~~~~~~~~~~~~~keq~~li~~f~----eer 783 (826)
.+.++.|+.|+.++..++.+.+..++.|.. .++...++++.++++++++.++..+.+.... .++
T Consensus 141 ~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~ 220 (301)
T PF14362_consen 141 DAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQIDAAIAALDAQIAARK 220 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHH
Confidence 456889999999999999999999988882 3888899999999999999998888887777 444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 003366 784 DRREREEENLRKKIKDASDTIQDLLDKIKLLEKMKT 819 (826)
Q Consensus 784 ~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~~~~~ 819 (826)
.+.+...+.....-....+.-..+|+++.++.....
T Consensus 221 ~~l~~~~~~~~a~~~~~~~~~~G~l~R~~Al~~L~~ 256 (301)
T PF14362_consen 221 ARLDEARQAKVAEFQAIISANDGFLARLEALWELTK 256 (301)
T ss_pred HHHHHHHHHHHHHHhHhhccCCCHHHHHHHHHHHHh
Confidence 444433333333333333445779999999887663
No 97
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.72 E-value=2.3 Score=44.64 Aligned_cols=56 Identities=16% Similarity=0.303 Sum_probs=33.1
Q ss_pred cccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 003366 717 CSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESL 775 (826)
Q Consensus 717 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~l 775 (826)
|++...+.+|++|..+|+++|.....+...+ ...|...++++.++++++++|...|
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~~~~~---~~~l~~~~~~~~~~~~~L~~~n~~L 144 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNTWNQR---TAEMQQKVAQSDSVINGLKEENQKL 144 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556678888888888888887776664422 2223344444444555544444444
No 98
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=90.70 E-value=0.72 Score=56.22 Aligned_cols=89 Identities=21% Similarity=0.405 Sum_probs=60.8
Q ss_pred HHHHHhccchhhhhC--------C---CceEEEEEEEccCCCceEEEEEECCCCCCHHHHhh-hccc-------------
Q 003366 156 AFAELLDNSLDEVCN--------G---ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRH-CMSL------------- 210 (826)
Q Consensus 156 AIAELIDNAiDA~~~--------g---At~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~-~Lsf------------- 210 (826)
-+-.||-||+|.-.- | .-.|.|.-. -.++.-.|.|.|||.|++++.++. ++.-
T Consensus 436 PL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~--~~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lSd 513 (716)
T COG0643 436 PLTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAY--HEGNNIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLSD 513 (716)
T ss_pred cHHHHHhcchhccCCCHHHHHHcCCCCcceEEEEEE--cCCCeEEEEEeeCCCCCCHHHHHHHHHHcCCCChHHhccCCH
Confidence 356799999997211 0 123555543 335677899999999999998875 4433
Q ss_pred ----------cccccccCCcccCcccCcc---cccccccCCeEEEEeeec
Q 003366 211 ----------GYSAKSKAANTIGQYGNGF---KTSTMRLGADVIVFSCCC 247 (826)
Q Consensus 211 ----------G~SsK~~~~~~IGrfG~Gf---KsAsmrLG~~v~V~SK~~ 247 (826)
|+|.+. .-+.+--.|+|+ |+..=+||-.|.|-|+..
T Consensus 514 ~Ei~~LIF~PGFSTa~-~VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G 562 (716)
T COG0643 514 EEILNLIFAPGFSTAE-QVTDVSGRGVGMDVVKTNIEQLGGSISVSSEPG 562 (716)
T ss_pred HHHHHHHhcCCCCcch-hhhcccCCccCHHHHHHHHHHcCCEEEEEecCC
Confidence 444442 224566679998 566668999999999864
No 99
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=90.52 E-value=4.5 Score=42.67 Aligned_cols=67 Identities=31% Similarity=0.508 Sum_probs=46.6
Q ss_pred hhhhhhhhhhhHHHHHHHHhHH-----h----------HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003366 721 ANLGQLKQENHELKKRLEKKEG-----E----------LQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDR 785 (826)
Q Consensus 721 ~~~~~~~~e~~~~~~~~~~~~~-----~----------~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~r 785 (826)
.-|.+++.++..|+.++...-+ . +.+..+++..|..+++.+++.+++..++-+.+-+.....|..
T Consensus 27 ~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~ 106 (302)
T PF10186_consen 27 SELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSR 106 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888888888888877654 2 222337777777777777777777777777777776666654
Q ss_pred hH
Q 003366 786 RE 787 (826)
Q Consensus 786 r~ 787 (826)
-+
T Consensus 107 l~ 108 (302)
T PF10186_consen 107 LS 108 (302)
T ss_pred HH
Confidence 33
No 100
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=90.52 E-value=2.3 Score=56.77 Aligned_cols=92 Identities=26% Similarity=0.394 Sum_probs=64.4
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHH
Q 003366 720 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESL---IDIFAEERDRREREEENLRKK 796 (826)
Q Consensus 720 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~l---i~~f~eer~rr~~e~~~lr~k 796 (826)
...+.+|.+...+|..|+..++++|+.|+..+..++.+..++...+++++++.+-. +..-.|-+.+|+.|.+.||..
T Consensus 1089 ~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~ 1168 (1930)
T KOG0161|consen 1089 QAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRD 1168 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888889899999999998888777777777777777777777665544 444556667777777777777
Q ss_pred HHHHHHHHHHHHHHH
Q 003366 797 IKDASDTIQDLLDKI 811 (826)
Q Consensus 797 l~~a~~~i~~~~~~~ 811 (826)
|+++..+-...++.+
T Consensus 1169 leee~~~~e~~~~~l 1183 (1930)
T KOG0161|consen 1169 LEEETLDHEAQIEEL 1183 (1930)
T ss_pred HHHHHHhHHHHHHHH
Confidence 766655444433333
No 101
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=90.29 E-value=2.7 Score=51.37 Aligned_cols=94 Identities=27% Similarity=0.413 Sum_probs=64.4
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHH-HH------------------HhhhcHHHHHHHHHHHHHHHHHHHHHHHH------
Q 003366 723 LGQLKQENHELKKRLEKKEGELQE-ER------------------ERCRSLEAQLKVMQQTIEELNKEQESLID------ 777 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~-e~------------------~~~~~l~~~~~~~~~~~~~~~keq~~li~------ 777 (826)
+.-|+-||..|+.||.-+...|+. |+ -.|.+|+.||+|..+.+|.+...+|.|+.
T Consensus 389 ~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~ 468 (861)
T PF15254_consen 389 MQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQK 468 (861)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHH
Confidence 778999999999999988888743 44 24567888887766666555544444433
Q ss_pred --------HHH-------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 003366 778 --------IFA-------EERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 816 (826)
Q Consensus 778 --------~f~-------eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~~ 816 (826)
+|- |-+.-.|.|-.+++.-+++|.-..+.+-=+|.+.|+
T Consensus 469 ~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sek 522 (861)
T PF15254_consen 469 EENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEK 522 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHh
Confidence 332 224455666777777777888888888777777664
No 102
>PRK13560 hypothetical protein; Provisional
Probab=90.16 E-value=0.29 Score=57.35 Aligned_cols=73 Identities=21% Similarity=0.252 Sum_probs=46.4
Q ss_pred HHHHHhccchhhhhCC--CceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCcccccc
Q 003366 156 AFAELLDNSLDEVCNG--ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTST 233 (826)
Q Consensus 156 AIAELIDNAiDA~~~g--At~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfKsAs 233 (826)
.|.+||.||+.+...+ +..|.|.+.... ++...|.|.|||+||+++.. +. .| -|+||..+-
T Consensus 715 il~NLl~NAik~~~~~~~~~~i~i~~~~~~-~~~v~i~V~D~G~GI~~~~~-----~~----------~~-~gLGLai~~ 777 (807)
T PRK13560 715 IISELLSNALKHAFPDGAAGNIKVEIREQG-DGMVNLCVADDGIGLPAGFD-----FR----------AA-ETLGLQLVC 777 (807)
T ss_pred HHHHHHHHHHHhhccCCCCceEEEEEEEcC-CCEEEEEEEeCCCcCCcccc-----cc----------cc-CCccHHHHH
Confidence 6789999999974222 234666654321 34568999999999998631 10 01 157775322
Q ss_pred ---cccCCeEEEEee
Q 003366 234 ---MRLGADVIVFSC 245 (826)
Q Consensus 234 ---mrLG~~v~V~SK 245 (826)
-..|-.+.|-|.
T Consensus 778 ~iv~~~gG~I~v~S~ 792 (807)
T PRK13560 778 ALVKQLDGEIALDSR 792 (807)
T ss_pred HHHHHcCCEEEEEcC
Confidence 257888888884
No 103
>PRK11637 AmiB activator; Provisional
Probab=90.07 E-value=4.1 Score=46.40 Aligned_cols=79 Identities=16% Similarity=0.275 Sum_probs=53.3
Q ss_pred hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 731 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLD 809 (826)
Q Consensus 731 ~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~ 809 (826)
...++.|.....+++.++...+.+..+++..+++|+...+|+..+++-+..++..++.+.+.|+...+.....|.+|..
T Consensus 176 ~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~~ 254 (428)
T PRK11637 176 KQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAER 254 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555666666666666677777777777788888888888888887777777777666666666655543
No 104
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=90.03 E-value=5.7 Score=40.06 Aligned_cols=88 Identities=28% Similarity=0.490 Sum_probs=52.1
Q ss_pred hhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 003366 726 LKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELN---KEQESLIDIFAEERDRREREEENLRKKIKDASD 802 (826)
Q Consensus 726 ~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~---keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~ 802 (826)
+..|-.+++.+|...++++..+.+++..++.++...+....... +.=+.-++.|.++......|-..|++++++.-.
T Consensus 79 ~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~ 158 (191)
T PF04156_consen 79 LQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSRE 158 (191)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666777777777776666666666666655554443333 333444566666666666666666666665555
Q ss_pred HHHHHHHHHhh
Q 003366 803 TIQDLLDKIKL 813 (826)
Q Consensus 803 ~i~~~~~~~~~ 813 (826)
.++++...+..
T Consensus 159 ~~~~~~~~~~~ 169 (191)
T PF04156_consen 159 EVQELRSQLER 169 (191)
T ss_pred HHHHHHHHHHH
Confidence 55555544443
No 105
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=89.75 E-value=3.6 Score=51.88 Aligned_cols=98 Identities=19% Similarity=0.356 Sum_probs=69.2
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------
Q 003366 722 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD----------------- 784 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~----------------- 784 (826)
-|++|++|...++++|..+++.+..+++-++.|.++++..+.+|..-++|-+.+-.-|.+-+.
T Consensus 449 ~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~ 528 (1041)
T KOG0243|consen 449 QIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEE 528 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488888999999999999998887777667777777766666666555555554444433332
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 003366 785 -RREREEENLRKKIKDASDTIQDLLDKIKLLEKMKTP 820 (826)
Q Consensus 785 -rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~~~~~~ 820 (826)
.+|+ ...||.-|+++..-++.|.++|....+.-.+
T Consensus 529 ~l~~~-a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~ 564 (1041)
T KOG0243|consen 529 KLVDR-ATKLRRSLEESQDDLSSLFEKLDRKDRLDDD 564 (1041)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 2333 5678888899999999999998866554443
No 106
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=89.25 E-value=0.66 Score=53.96 Aligned_cols=63 Identities=19% Similarity=0.176 Sum_probs=47.9
Q ss_pred HHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccc
Q 003366 153 ALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKS 216 (826)
Q Consensus 153 pFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~ 216 (826)
+-..+-.|+-||+||+...|.-|+|+.... ..+..+|.|.|||.|-..+-+.+.+..-+++|.
T Consensus 565 ieQVlvNl~~NaldA~~h~~p~i~~~~~~~-~~e~l~i~i~DnGqGwp~~l~dkLl~PFttsK~ 627 (673)
T COG4192 565 IEQVLVNLIVNALDASTHFAPWIKLIALGT-EQEMLRIAIIDNGQGWPHELVDKLLTPFTTSKE 627 (673)
T ss_pred HHHHHHHHHHHHHhhhccCCceEEEEeecC-cccceEEEEecCCCCCchhHHHHhcCCcccccc
Confidence 335678899999999876666566655432 356788999999999999999998876666663
No 107
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=89.17 E-value=2.7 Score=49.86 Aligned_cols=93 Identities=29% Similarity=0.471 Sum_probs=67.8
Q ss_pred cchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHh
Q 003366 719 LGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKV--------------MQQTIEELNKEQESLIDIFAEERD 784 (826)
Q Consensus 719 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~--------------~~~~~~~~~keq~~li~~f~eer~ 784 (826)
++-.|.+|+.|+.+|+.++.+.+..+...+++-+.++..|-+ ++-.+..+.+|+.-|.+-+..-|.
T Consensus 111 ~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 111 LEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 455699999999999999999998887666555544444333 333445567788888888888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003366 785 RREREEENLRKKIKDASDTIQDLLDKIKLLE 815 (826)
Q Consensus 785 rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~ 815 (826)
..|+|- .||. |+.+.+|+||+.|+-+.
T Consensus 191 ~ld~Et-llr~---d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 191 QLDDET-LLRV---DLQNRVQTLLEELAFLK 217 (546)
T ss_pred HHHHHH-HHHH---HHHhHHHHHHHHHHHHH
Confidence 888764 3332 67789999999988654
No 108
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=89.15 E-value=3 Score=52.54 Aligned_cols=88 Identities=28% Similarity=0.458 Sum_probs=61.2
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhH-------HHHH-HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---HH
Q 003366 720 GANLGQLKQENHELKKRLEKKEGEL-------QEER-ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRR---ER 788 (826)
Q Consensus 720 ~~~~~~~~~e~~~~~~~~~~~~~~~-------~~e~-~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr---~~ 788 (826)
+..|.++|.+-..|++.+...++++ +.|+ +|.+.|+.+++.++-++..|..|++-+..-..++..++ ..
T Consensus 364 ~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~ 443 (1074)
T KOG0250|consen 364 ENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEG 443 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3357777777777777776666654 2222 88999999999999999999999988887666554444 34
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003366 789 EEENLRKKIKDASDTIQDL 807 (826)
Q Consensus 789 e~~~lr~kl~~a~~~i~~~ 807 (826)
+.-.||+|+..-+.+|++|
T Consensus 444 ~i~~l~k~i~~~~~~l~~l 462 (1074)
T KOG0250|consen 444 EILQLRKKIENISEELKDL 462 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666666666665554
No 109
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=89.11 E-value=2.9 Score=44.72 Aligned_cols=68 Identities=24% Similarity=0.326 Sum_probs=43.4
Q ss_pred hhhHHHHHHHHhHHhHHHHH-------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 003366 729 ENHELKKRLEKKEGELQEER-------ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDA 800 (826)
Q Consensus 729 e~~~~~~~~~~~~~~~~~e~-------~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a 800 (826)
+...|||++....+.|+.+. +.+..|+.++++.|..|+.+.+|.- .+-|+++++-.|...|++++.+-
T Consensus 129 ~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s----~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 129 EYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENS----RLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhchhHHHHHHHHHHHh
Confidence 44566676666665554444 3344455555555555555555543 35688899999999999998754
No 110
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=88.72 E-value=4.3 Score=52.20 Aligned_cols=98 Identities=30% Similarity=0.440 Sum_probs=80.0
Q ss_pred hhhhhhhhhhHHHHHHHHhHHh----------HHHHHH-------hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003366 722 NLGQLKQENHELKKRLEKKEGE----------LQEERE-------RCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD 784 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~~~----------~~~e~~-------~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~ 784 (826)
.|.+|+++...|.++|...++. ++.+.. ....|.+++.++++++.++..+...++..|...|.
T Consensus 772 ~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 851 (1201)
T PF12128_consen 772 RIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRK 851 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999888876 233334 48899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 003366 785 RREREEENLRKKIKDASDTIQDLLDKIKLLEKMKT 819 (826)
Q Consensus 785 rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~~~~~ 819 (826)
+-+++...++..++.+...+..|..-+..+.....
T Consensus 852 ~le~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~ 886 (1201)
T PF12128_consen 852 ELEEELKALEEQLEQLEEQLRRLRDLLEKLAELSE 886 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Confidence 99999999999998888777765555554444433
No 111
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=88.23 E-value=0.77 Score=56.39 Aligned_cols=88 Identities=14% Similarity=0.171 Sum_probs=56.1
Q ss_pred HHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhcc-ccccccccCCcccCcccCcccc
Q 003366 153 ALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMS-LGYSAKSKAANTIGQYGNGFKT 231 (826)
Q Consensus 153 pFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~Ls-fG~SsK~~~~~~IGrfG~GfKs 231 (826)
+-.+|..|||||+-..- ..+.|+|..... ...-++.|.|+|.|++++++.+.+- |-+-.|.+ ...--|+|+.-
T Consensus 776 ieQVLiNLleNA~Kyap-~~s~I~I~~~~~--~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~~---~~~G~GLGLsI 849 (890)
T COG2205 776 IEQVLINLLENALKYAP-PGSEIRINAGVE--RENVVFSVIDEGPGIPEGELERIFDKFYRGNKES---ATRGVGLGLAI 849 (890)
T ss_pred HHHHHHHHHHHHHhhCC-CCCeEEEEEEEe--cceEEEEEEeCCCCCChhHHHHhhhhhhcCCCCC---CCCCccccHHH
Confidence 45789999999999832 234577776543 3677899999999999999999774 43333321 12222444432
Q ss_pred c--cc-ccCCeEEEEeee
Q 003366 232 S--TM-RLGADVIVFSCC 246 (826)
Q Consensus 232 A--sm-rLG~~v~V~SK~ 246 (826)
+ .. ..|..+.+..+.
T Consensus 850 c~~iv~ahgG~I~a~~~~ 867 (890)
T COG2205 850 CRGIVEAHGGTISAENNP 867 (890)
T ss_pred HHHHHHHcCCeEEEEEcC
Confidence 1 11 345677777643
No 112
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=87.60 E-value=3.8 Score=49.16 Aligned_cols=55 Identities=24% Similarity=0.270 Sum_probs=28.0
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 003366 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDT 803 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~ 803 (826)
++...++.++++++++++++..+..+.--.+.++|+.-..+.+.++..++++...
T Consensus 230 ~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~ 284 (650)
T TIGR03185 230 QEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQ 284 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555444444455555555555555555555444333
No 113
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=87.60 E-value=3.7 Score=48.71 Aligned_cols=79 Identities=23% Similarity=0.415 Sum_probs=47.8
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASD 802 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~ 802 (826)
..+|.++..+|.+++...++.+.....-...++.+++++.++++++.++|..+.+...+=| .+|...|++|+....
T Consensus 350 ~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lr----k~E~eAr~kL~~~~~ 425 (569)
T PRK04778 350 VRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLR----KDELEAREKLERYRN 425 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 5555555555555555555555444444666777788888888888888887776665433 334444555554444
Q ss_pred HHH
Q 003366 803 TIQ 805 (826)
Q Consensus 803 ~i~ 805 (826)
++.
T Consensus 426 ~L~ 428 (569)
T PRK04778 426 KLH 428 (569)
T ss_pred HHH
Confidence 443
No 114
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=87.41 E-value=5.8 Score=38.77 Aligned_cols=93 Identities=26% Similarity=0.355 Sum_probs=53.5
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHhhhHHHH
Q 003366 720 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE---------ERDRREREE 790 (826)
Q Consensus 720 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~e---------er~rr~~e~ 790 (826)
...+..|..+|.+|-++...++..|..-+..+..+-..+..++++..++.++|..+..-|+- .=..-|.|-
T Consensus 33 ~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~l~~~L~~~~~e~eeeS 112 (150)
T PF07200_consen 33 QQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDALLARLQAAASEAEEES 112 (150)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHH
Confidence 44567788888888888888888877666666666666666666666666666666555553 334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 003366 791 ENLRKKIKDASDTIQDLLDKIK 812 (826)
Q Consensus 791 ~~lr~kl~~a~~~i~~~~~~~~ 812 (826)
+.|..+.-+....+++.+.+-.
T Consensus 113 e~lae~fl~g~~d~~~Fl~~f~ 134 (150)
T PF07200_consen 113 EELAEEFLDGEIDVDDFLKQFK 134 (150)
T ss_dssp HHHC-S-SSSHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHH
Confidence 4454444444444455555444
No 115
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=87.23 E-value=5.7 Score=47.75 Aligned_cols=84 Identities=23% Similarity=0.346 Sum_probs=58.3
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003366 733 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIK 812 (826)
Q Consensus 733 ~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~ 812 (826)
+.+++...+..+..-..+...++.++..++.+++++.++.+.|-+.|..+-..+.+|.+.|+.+++.+-....+...+++
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~ 286 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLR 286 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445566677777777777777788888888888777777777778888888887777777777776
Q ss_pred hhhh
Q 003366 813 LLEK 816 (826)
Q Consensus 813 ~~~~ 816 (826)
.+-.
T Consensus 287 ~l~~ 290 (650)
T TIGR03185 287 ELAA 290 (650)
T ss_pred HHhc
Confidence 5543
No 116
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=87.18 E-value=6.1 Score=49.28 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=12.2
Q ss_pred eEEEEEECCCCCCHHHHhhhcc
Q 003366 188 RMLLIEDNGGGMNPDKMRHCMS 209 (826)
Q Consensus 188 ~~L~I~DNG~GMs~eeL~~~Ls 209 (826)
..+.+--||.|=|- |.+++.
T Consensus 25 ~~~i~G~NGsGKS~--ildAi~ 44 (1164)
T TIGR02169 25 FTVISGPNGSGKSN--IGDAIL 44 (1164)
T ss_pred eEEEECCCCCCHHH--HHHHHH
Confidence 45777888888543 444443
No 117
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=86.37 E-value=2.1 Score=45.50 Aligned_cols=46 Identities=30% Similarity=0.503 Sum_probs=22.0
Q ss_pred hhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 003366 726 LKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKE 771 (826)
Q Consensus 726 ~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~ke 771 (826)
|..||.++++.+.+++++++..-.+.+.++++...+++|.|++++|
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~E 194 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDE 194 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 3344444445555554444444444444444444444444444444
No 118
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=86.12 E-value=8.4 Score=41.58 Aligned_cols=80 Identities=31% Similarity=0.466 Sum_probs=52.0
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASD 802 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~ 802 (826)
+..++.|+.+++..+..++.++..=..++.+|+.++.+++.++....+. |...-...+.|-..||..+..-..
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~-------~~~~i~~le~el~~l~~~~~~~~~ 283 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREE-------YQAEIAELEEELAELREEMARQLR 283 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHH-------HHHhhhccchhHHHHHHHHHHHHH
Confidence 5566677777777776666666665566666666666666655544333 333445566677777777777777
Q ss_pred HHHHHHH
Q 003366 803 TIQDLLD 809 (826)
Q Consensus 803 ~i~~~~~ 809 (826)
.-|+||+
T Consensus 284 ey~~Ll~ 290 (312)
T PF00038_consen 284 EYQELLD 290 (312)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7788776
No 119
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.08 E-value=9.3 Score=44.53 Aligned_cols=66 Identities=23% Similarity=0.337 Sum_probs=27.7
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003366 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLL 814 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~ 814 (826)
.|+..|.+.+...++++++...+...||.=..--+..-...+|.+.+-+..--..|+||-|||+-+
T Consensus 382 ~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 382 RKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344444444444444444443333333333322222222233333332332333466777776644
No 120
>PF15294 Leu_zip: Leucine zipper
Probab=86.04 E-value=7.4 Score=42.86 Aligned_cols=45 Identities=36% Similarity=0.500 Sum_probs=34.8
Q ss_pred cchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH
Q 003366 719 LGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ 763 (826)
Q Consensus 719 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~ 763 (826)
|..-|..|+.||..||+||+..|...-.=++-...|+.+|.++|.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445699999999999999999998865555555666666666665
No 121
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=85.82 E-value=1.2 Score=53.37 Aligned_cols=56 Identities=21% Similarity=0.322 Sum_probs=41.7
Q ss_pred HHHHHHHhccchhhhhCC-CceE---EEEEEEccCCCceEEEEEECCCCCCHHHHhhhcc
Q 003366 154 LGAFAELLDNSLDEVCNG-ATYS---NIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMS 209 (826)
Q Consensus 154 FgAIAELIDNAiDA~~~g-At~V---~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~Ls 209 (826)
=.|+-.||.||.+|+... +... .|.+..+..+|..++.|.|||.|.+.+.+++++-
T Consensus 602 ~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~E 661 (712)
T COG5000 602 GQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHRALE 661 (712)
T ss_pred HHHHHHHHHhHHHHhhhcccccCCcceEEEEEecCCCeEEEEEecCCCCCChHHhhhhcc
Confidence 357889999999997531 1111 2444444457889999999999999999999874
No 122
>PRK11637 AmiB activator; Provisional
Probab=85.79 E-value=9 Score=43.72 Aligned_cols=19 Identities=16% Similarity=0.321 Sum_probs=8.8
Q ss_pred hhhhhhhhhHHHHHHHHhH
Q 003366 723 LGQLKQENHELKKRLEKKE 741 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~ 741 (826)
|++++++..+++..|...+
T Consensus 49 l~~l~~qi~~~~~~i~~~~ 67 (428)
T PRK11637 49 LKSIQQDIAAKEKSVRQQQ 67 (428)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333
No 123
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=85.38 E-value=4.6 Score=51.58 Aligned_cols=69 Identities=28% Similarity=0.448 Sum_probs=42.9
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhh-h---------HHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 744 LQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIF---AEERDR-R---------EREEENLRKKIKDASDTIQDLLDK 810 (826)
Q Consensus 744 ~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f---~eer~r-r---------~~e~~~lr~kl~~a~~~i~~~~~~ 810 (826)
+..|.++.+.|+.++.+.+..|+.+.+....+-|.. ..+|.. . -.++..||+..++-+..||++++.
T Consensus 503 ~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~ 582 (1317)
T KOG0612|consen 503 LSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEE 582 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhc
Confidence 445557777777777777777777755555443221 112211 1 123567888889999999998884
Q ss_pred Hh
Q 003366 811 IK 812 (826)
Q Consensus 811 ~~ 812 (826)
.+
T Consensus 583 ~~ 584 (1317)
T KOG0612|consen 583 NR 584 (1317)
T ss_pred cc
Confidence 43
No 124
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=85.30 E-value=11 Score=38.98 Aligned_cols=62 Identities=29% Similarity=0.434 Sum_probs=45.0
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHH------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 720 GANLGQLKQENHELKKRLEKKEGELQEER------ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE 781 (826)
Q Consensus 720 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~------~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~e 781 (826)
...+..|+++..++++++..+++.+..+. +.+..|.+++++++++++++.+|-+++.+.=.+
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~ 135 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPE 135 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 34577788888888888888777775554 566677788888888888888887765544333
No 125
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=84.84 E-value=5.4 Score=44.92 Aligned_cols=60 Identities=30% Similarity=0.370 Sum_probs=31.3
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------hhHHHHHHHHHHHHHHHHHHHHH
Q 003366 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD---------------------RREREEENLRKKIKDASDTIQDL 807 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~---------------------rr~~e~~~lr~kl~~a~~~i~~~ 807 (826)
+.+..|+-||++++|+..|+..|-..|-.-++|++. .|..---+|+.|..|-...|..|
T Consensus 141 EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnL 220 (401)
T PF06785_consen 141 EENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNL 220 (401)
T ss_pred HHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555554444444444333444332 23333445666766666666666
Q ss_pred H
Q 003366 808 L 808 (826)
Q Consensus 808 ~ 808 (826)
|
T Consensus 221 L 221 (401)
T PF06785_consen 221 L 221 (401)
T ss_pred H
Confidence 5
No 126
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=84.76 E-value=1.4 Score=46.25 Aligned_cols=59 Identities=22% Similarity=0.277 Sum_probs=39.0
Q ss_pred hhcccccccccHHHHHHHHhccchhhhhCC--CceEEEEEEEccCCCceEEEEEECCCCCCHH
Q 003366 142 FLHSNATSHKWALGAFAELLDNSLDEVCNG--ATYSNIDMLINRKDGSRMLLIEDNGGGMNPD 202 (826)
Q Consensus 142 fLhSNSTSH~wpFgAIAELIDNAiDA~~~g--At~V~Idi~~~~~~g~~~L~I~DNG~GMs~e 202 (826)
+|..+....--. +|-||+-||+.+-.-+ ...|.|.+.....++...+.|.|||.|+..+
T Consensus 114 ~l~~d~A~~Lgl--iv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~ 174 (221)
T COG3920 114 FLDPDTAVPLGL--IVHELVTNALKHAFLSRPGGEIRITLSREGDGGRFLLTVWDEGGGPPVE 174 (221)
T ss_pred EECchhhHHHHH--HHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCCCeEEEEEEECCCCCCCC
Confidence 555554443332 5899999999983322 3457777765432114789999999999865
No 127
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=84.57 E-value=13 Score=43.89 Aligned_cols=99 Identities=24% Similarity=0.366 Sum_probs=79.4
Q ss_pred hhhhhhhhh---hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHH
Q 003366 722 NLGQLKQEN---HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRER---EEENLRK 795 (826)
Q Consensus 722 ~~~~~~~e~---~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~---e~~~lr~ 795 (826)
++|+|++-| .++.|-|.++..++.+-.+.+-+|..||-++|+|+..+--|-|.|..++.+-.|+.++ |++.|..
T Consensus 203 ~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleD 282 (596)
T KOG4360|consen 203 CVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELED 282 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 488888877 5677888999999988899999999999999999999999999999999888887765 6677777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCC
Q 003366 796 KIKDASDTIQDLLDKIKLLEKMKTP 820 (826)
Q Consensus 796 kl~~a~~~i~~~~~~~~~~~~~~~~ 820 (826)
|.-|-....-+--|.|+.|+---.|
T Consensus 283 kyAE~m~~~~EaeeELk~lrs~~~p 307 (596)
T KOG4360|consen 283 KYAECMQMLHEAEEELKCLRSCDAP 307 (596)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCc
Confidence 7776666666666666666543333
No 128
>PRK04863 mukB cell division protein MukB; Provisional
Probab=84.35 E-value=2.9 Score=54.88 Aligned_cols=101 Identities=23% Similarity=0.345 Sum_probs=68.3
Q ss_pred cccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHH-------------------HHHHH
Q 003366 717 CSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQ-------------------ESLID 777 (826)
Q Consensus 717 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq-------------------~~li~ 777 (826)
+.|+.-|++++++...+++.+++.+..+.+-..+-++|...+++++++++++..+- +-|-.
T Consensus 988 ~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~~~~~~~~l~~ 1067 (1486)
T PRK04863 988 EKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHA 1067 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHhHHHHHH
Confidence 34566678888888888888887777765555555666666666666665554443 33334
Q ss_pred HHHHHHhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 003366 778 IFAEERDRR----------EREEENLRKKIKDASDTIQDLLDKIKLLEKM 817 (826)
Q Consensus 778 ~f~eer~rr----------~~e~~~lr~kl~~a~~~i~~~~~~~~~~~~~ 817 (826)
-++.-|.|| ..|-++|.+||+.+.+.+.++.+.|+.+...
T Consensus 1068 ~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK~~ 1117 (1486)
T PRK04863 1068 RLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAG 1117 (1486)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444 4577899999999999999999888876543
No 129
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=84.25 E-value=17 Score=36.48 Aligned_cols=90 Identities=24% Similarity=0.330 Sum_probs=51.5
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASD 802 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~ 802 (826)
++.-+.+..+|+.++..+|.+|+-=-...-.++.+.+++++.++++.-+ |...+.+|.+-..|-.+||.--+.--.
T Consensus 12 LK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~e----l~~lt~el~~L~~EL~~l~sEk~~L~k 87 (140)
T PF10473_consen 12 LKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEE----LEELTSELNQLELELDTLRSEKENLDK 87 (140)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556678888888888888887433333344455555555555554433 334455555555555555555555555
Q ss_pred HHHHHHHHHhhhhh
Q 003366 803 TIQDLLDKIKLLEK 816 (826)
Q Consensus 803 ~i~~~~~~~~~~~~ 816 (826)
..|..-++|..|+.
T Consensus 88 ~lq~~q~kv~eLE~ 101 (140)
T PF10473_consen 88 ELQKKQEKVSELES 101 (140)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555543
No 130
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=84.24 E-value=7.6 Score=44.72 Aligned_cols=97 Identities=18% Similarity=0.355 Sum_probs=51.5
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhhhHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE------ERDRREREEENLRKK 796 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~e------er~rr~~e~~~lr~k 796 (826)
++-+++.-...++.|.++. +....|+.-.|..+..+++.+++++++|+-.+-..+.. +++.--.|-..|+++
T Consensus 4 ~k~ir~n~~~v~~~l~~R~--~~~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~ 81 (425)
T PRK05431 4 IKLIRENPEAVKEALAKRG--FPLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEE 81 (425)
T ss_pred HHHHHhCHHHHHHHHHhcC--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHH
Confidence 5556655555677777662 12224555555555555555555555555555444443 222233344556666
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCc
Q 003366 797 IKDASDTIQDLLDKIKLLEKMKTPSI 822 (826)
Q Consensus 797 l~~a~~~i~~~~~~~~~~~~~~~~~~ 822 (826)
|++.-..+.++-+++..+- ++.||.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~-~~iPN~ 106 (425)
T PRK05431 82 IKALEAELDELEAELEELL-LRIPNL 106 (425)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhCCCC
Confidence 6666666666666666533 555654
No 131
>PLN02320 seryl-tRNA synthetase
Probab=84.01 E-value=7.3 Score=46.07 Aligned_cols=97 Identities=15% Similarity=0.307 Sum_probs=59.2
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhHHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE-----ERDRREREEENLRKKI 797 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~e-----er~rr~~e~~~lr~kl 797 (826)
++.+++.-..+++.|.++--++. +|..-.|.++...++++++++..|+-.+..-+.+ ++..--.|...|+++|
T Consensus 69 ~k~ir~n~~~v~~~l~~R~~~~~--vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i 146 (502)
T PLN02320 69 FKWIRDNKEAVAINIRNRNSNAN--LELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGL 146 (502)
T ss_pred HHHHHhCHHHHHHHHHhcCCCcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHH
Confidence 67777766777888887753322 5555566666666666666666666666665554 2222223556667777
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCc
Q 003366 798 KDASDTIQDLLDKIKLLEKMKTPSI 822 (826)
Q Consensus 798 ~~a~~~i~~~~~~~~~~~~~~~~~~ 822 (826)
++.-..++++-+++..+- +..||.
T Consensus 147 ~~le~~~~~~~~~l~~~~-l~iPN~ 170 (502)
T PLN02320 147 VTLEEDLVKLTDELQLEA-QSIPNM 170 (502)
T ss_pred HHHHHHHHHHHHHHHHHH-HhCCCC
Confidence 766666666666666533 555654
No 132
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=83.81 E-value=11 Score=46.70 Aligned_cols=14 Identities=29% Similarity=0.513 Sum_probs=8.1
Q ss_pred HHHHHHHhccchhh
Q 003366 154 LGAFAELLDNSLDE 167 (826)
Q Consensus 154 FgAIAELIDNAiDA 167 (826)
+..+.+.|++++|.
T Consensus 128 ~~~l~~~i~~~id~ 141 (782)
T PRK00409 128 LPELEQEIHNCIDE 141 (782)
T ss_pred cHHHHHHHHHHhCC
Confidence 34466666666664
No 133
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=83.65 E-value=35 Score=31.12 Aligned_cols=81 Identities=14% Similarity=0.253 Sum_probs=40.7
Q ss_pred hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 003366 731 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQT--------IEELNKEQESLIDIFAEERDRREREEENLRKKIKDASD 802 (826)
Q Consensus 731 ~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~--------~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~ 802 (826)
..|+.++..++..+..=-+.++.|+.+.+.++++ ++.++++...|++-+.+++.++-..-......|.....
T Consensus 10 ~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~ 89 (127)
T smart00502 10 TKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQE 89 (127)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333333444444444443333 34456666777777777776666555555555554444
Q ss_pred HHHHHHHHH
Q 003366 803 TIQDLLDKI 811 (826)
Q Consensus 803 ~i~~~~~~~ 811 (826)
.+..+.+-+
T Consensus 90 ~l~~~~~~~ 98 (127)
T smart00502 90 KLSHAINFT 98 (127)
T ss_pred HHHHHHHHH
Confidence 444444443
No 134
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=83.53 E-value=4 Score=46.98 Aligned_cols=80 Identities=30% Similarity=0.422 Sum_probs=53.5
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHH-HhhhcHHH----------HH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 003366 720 GANLGQLKQENHELKKRLEKKEGELQEER-ERCRSLEA----------QL-KVMQQTIEELNKEQESLIDIFAEERDRRE 787 (826)
Q Consensus 720 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~-~~~~~l~~----------~~-~~~~~~~~~~~keq~~li~~f~eer~rr~ 787 (826)
-..++||++|-..|..-|..-+|=+...+ .|.+.||. || .++-+--.++.+|||+|++-+=---|.-+
T Consensus 135 srkl~qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe 214 (552)
T KOG2129|consen 135 SRKLKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLE 214 (552)
T ss_pred hHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34599999888888655544333332222 33333332 22 22333345688999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 003366 788 REEENLRKKIKD 799 (826)
Q Consensus 788 ~e~~~lr~kl~~ 799 (826)
+|..-|.+||.+
T Consensus 215 ~ekr~Lq~KlDq 226 (552)
T KOG2129|consen 215 QEKRYLQKKLDQ 226 (552)
T ss_pred HHHHHHHHHhcC
Confidence 999999999964
No 135
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=83.42 E-value=14 Score=44.26 Aligned_cols=89 Identities=29% Similarity=0.449 Sum_probs=48.3
Q ss_pred hhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHH
Q 003366 724 GQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESL---IDIFAEERDRREREEENLRKKIKDA 800 (826)
Q Consensus 724 ~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~l---i~~f~eer~rr~~e~~~lr~kl~~a 800 (826)
....+|+.+|.+-...++++...-..+...|+++|...+++.+.+..+++.| .+...+|++--..+.+.++.++++-
T Consensus 146 E~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~L 225 (546)
T PF07888_consen 146 EECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIREL 225 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555554444444443333555556666665555555544444433 3445566666556666666666666
Q ss_pred HHHHHHHHHHHh
Q 003366 801 SDTIQDLLDKIK 812 (826)
Q Consensus 801 ~~~i~~~~~~~~ 812 (826)
-..|+.|..++.
T Consensus 226 Eedi~~l~qk~~ 237 (546)
T PF07888_consen 226 EEDIKTLTQKEK 237 (546)
T ss_pred HHHHHHHHHHHH
Confidence 666666655553
No 136
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=83.32 E-value=9.9 Score=47.05 Aligned_cols=13 Identities=8% Similarity=0.171 Sum_probs=6.8
Q ss_pred HHHHHHhccchhh
Q 003366 155 GAFAELLDNSLDE 167 (826)
Q Consensus 155 gAIAELIDNAiDA 167 (826)
..+.+.|++++|.
T Consensus 124 ~~l~~~i~~~id~ 136 (771)
T TIGR01069 124 PPLENDIIACIDD 136 (771)
T ss_pred HHHHHHHHHHhCC
Confidence 3455555555553
No 137
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=83.26 E-value=7.1 Score=41.59 Aligned_cols=70 Identities=31% Similarity=0.396 Sum_probs=42.6
Q ss_pred hhhhHHHHHHHH---hHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHH
Q 003366 728 QENHELKKRLEK---KEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFA---EERDRREREEENLRKKI 797 (826)
Q Consensus 728 ~e~~~~~~~~~~---~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~---eer~rr~~e~~~lr~kl 797 (826)
++|..+++-+.. +|++.....++-+.|+++++.-+.+||.+++.-++|.--+. -|=||--.|-++||+++
T Consensus 134 ~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 134 KENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 367777666654 34445555567777888888888888888777766654433 24444444444444443
No 138
>PHA02562 46 endonuclease subunit; Provisional
Probab=82.85 E-value=13 Score=43.07 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=18.5
Q ss_pred eEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhcc
Q 003366 174 YSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMS 209 (826)
Q Consensus 174 ~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~Ls 209 (826)
.+.|++.. ....+.+-+||.| ...|.+++.
T Consensus 19 ~~~i~f~~----~g~~~i~G~NG~G--KStll~aI~ 48 (562)
T PHA02562 19 PIEIQLDK----VKKTLITGKNGAG--KSTMLEALT 48 (562)
T ss_pred ceEEEEcC----CCEEEEECCCCCC--HHHHHHHHH
Confidence 34566521 2467888899999 455555544
No 139
>PRK10780 periplasmic chaperone; Provisional
Probab=82.80 E-value=13 Score=37.17 Aligned_cols=81 Identities=19% Similarity=0.309 Sum_probs=39.1
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhh---h-cH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEERERC---R-SL-EAQLKVMQQTIEELNKEQESLIDIFAEERDRREREE-ENLRKK 796 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~---~-~l-~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~-~~lr~k 796 (826)
-++|+.+.......|++++.+++.+.++- . .| +.+.++.+++|....++.......|.++-.+|.+|+ ..+..|
T Consensus 45 ~~~le~~~~~~q~el~~~~~elq~~~~~~q~~~~~ms~~~~~~~~~el~~~~~~~q~~~~~~qq~~~~~~~e~~~~i~~k 124 (165)
T PRK10780 45 SKQLENEFKGRASELQRMETDLQAKMQKLQRDGSTMKGSDRTKLEKDVMAQRQTFSQKAQAFEQDRRRRSNEERNKILTR 124 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666665444221 1 11 122333344444444444444555655544444443 555555
Q ss_pred HHHHHHH
Q 003366 797 IKDASDT 803 (826)
Q Consensus 797 l~~a~~~ 803 (826)
+.+|...
T Consensus 125 i~~ai~~ 131 (165)
T PRK10780 125 IQTAVKS 131 (165)
T ss_pred HHHHHHH
Confidence 5555443
No 140
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=82.76 E-value=11 Score=33.41 Aligned_cols=61 Identities=23% Similarity=0.342 Sum_probs=45.2
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 003366 752 RSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 816 (826)
Q Consensus 752 ~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~~ 816 (826)
+.|+.+++.+.+-.+++..|...|-.-... -..|-..|..|...|.+-|..++.+|+++|.
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~----~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKT----WREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 467777877777777777777766433222 2234456999999999999999999999885
No 141
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=82.74 E-value=11 Score=48.82 Aligned_cols=60 Identities=15% Similarity=0.366 Sum_probs=47.2
Q ss_pred cchhhhhhhhhhhHHHHHHHHhHHhHHHHH-------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 719 LGANLGQLKQENHELKKRLEKKEGELQEER-------ERCRSLEAQLKVMQQTIEELNKEQESLIDI 778 (826)
Q Consensus 719 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~-------~~~~~l~~~~~~~~~~~~~~~keq~~li~~ 778 (826)
|+.+-.++.+.+.+.++++..++..+..|| +....|..+++.++++|+...+.+.-+++-
T Consensus 734 i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY 800 (1201)
T PF12128_consen 734 IEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEY 800 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 455566677778888888888888888888 577888888888888888888777666654
No 142
>PRK13559 hypothetical protein; Provisional
Probab=82.66 E-value=1.7 Score=46.72 Aligned_cols=75 Identities=13% Similarity=0.029 Sum_probs=47.4
Q ss_pred HHHHHHHHhccchhhhh--CCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCccc
Q 003366 153 ALGAFAELLDNSLDEVC--NGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (826)
Q Consensus 153 pFgAIAELIDNAiDA~~--~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (826)
..-++-|||.||+.+-. .....|.|.+.....++...|.+.|||.||.++.- .-|+|+.
T Consensus 268 l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~~~~-------------------~~g~Gl~ 328 (361)
T PRK13559 268 LGLVLHELAVNAIKHGALSADQGRISISWKPSPEGAGFRIDWQEQGGPTPPKLA-------------------KRGFGTV 328 (361)
T ss_pred HHHHHHHHHHhHHHhccccCCCcEEEEEEEecCCCCeEEEEEECCCCCCCCCCC-------------------CCCcHHH
Confidence 34588999999999721 12345777663233355678999999999876521 1255654
Q ss_pred cc---ccc-cCCeEEEEeee
Q 003366 231 TS---TMR-LGADVIVFSCC 246 (826)
Q Consensus 231 sA---smr-LG~~v~V~SK~ 246 (826)
.. .-+ +|-.+.+.+..
T Consensus 329 i~~~~v~~~~gG~i~~~~~~ 348 (361)
T PRK13559 329 IIGAMVESQLNGQLEKTWSD 348 (361)
T ss_pred HHHHHHHHHcCCeEEEEEcC
Confidence 22 223 78888887753
No 143
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=82.52 E-value=18 Score=40.16 Aligned_cols=62 Identities=18% Similarity=0.313 Sum_probs=33.6
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 003366 751 CRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 816 (826)
Q Consensus 751 ~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~~ 816 (826)
+..|+.++++++.++++++++.+. |-.+++-...|--.+.+.+....+.++-+.++|..|++
T Consensus 73 ~~~l~~el~~le~e~~~l~~eE~~----~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 73 REELDQELEELEEELEELDEEEEE----YWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566666666666666554443 33344444455555555555555555555555555554
No 144
>PRK10884 SH3 domain-containing protein; Provisional
Probab=82.35 E-value=9.6 Score=40.14 Aligned_cols=45 Identities=13% Similarity=0.184 Sum_probs=23.5
Q ss_pred hhhhhHHHHHHHHhHHhHHH---HH-HhhhcHHHHHHHHHHHHHHHHHH
Q 003366 727 KQENHELKKRLEKKEGELQE---ER-ERCRSLEAQLKVMQQTIEELNKE 771 (826)
Q Consensus 727 ~~e~~~~~~~~~~~~~~~~~---e~-~~~~~l~~~~~~~~~~~~~~~ke 771 (826)
-....++++||.++|.++.. ++ +-...+..+..++++++++++++
T Consensus 85 Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 133 (206)
T PRK10884 85 LSTTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSV 133 (206)
T ss_pred hcCCccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 35567888888877766532 22 11222334444455555554433
No 145
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=82.31 E-value=1.8 Score=49.33 Aligned_cols=47 Identities=23% Similarity=0.307 Sum_probs=34.4
Q ss_pred HHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHH
Q 003366 153 ALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPD 202 (826)
Q Consensus 153 pFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~e 202 (826)
....+.+|+.||+.+. .+..|.|.+.... ++...|.|.|||.||+++
T Consensus 472 l~qv~~nll~NA~k~~--~~~~i~i~~~~~~-~~~~~i~V~D~G~Gi~~~ 518 (565)
T PRK10935 472 LLQIIREATLNAIKHA--NASEIAVSCVTNP-DGEHTVSIRDDGIGIGEL 518 (565)
T ss_pred HHHHHHHHHHHHHhcC--CCCeEEEEEEEcC-CCEEEEEEEECCcCcCCC
Confidence 4467899999999973 3455677664431 355679999999999974
No 146
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=82.20 E-value=41 Score=34.43 Aligned_cols=42 Identities=29% Similarity=0.471 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 003366 764 TIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQ 805 (826)
Q Consensus 764 ~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~ 805 (826)
..+-+-.|++.|-.-|-+|+.+.-+=|+....|....-.+||
T Consensus 88 EE~Rl~rere~~q~~~E~E~~~~~~KEe~~~~k~~~l~e~~q 129 (157)
T PF15236_consen 88 EEERLAREREELQRQFEEEQRKQREKEEEQTRKTQELYEAMQ 129 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334467778888888888887766666666666665555554
No 147
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=82.19 E-value=16 Score=39.29 Aligned_cols=39 Identities=26% Similarity=0.505 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 773 ESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKI 811 (826)
Q Consensus 773 ~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~ 811 (826)
+..|.-+.+++.+++.|-+.|+.+|..|-.....-.++|
T Consensus 88 ~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 88 EAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777889999999999999999998877665544444
No 148
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=82.05 E-value=16 Score=38.18 Aligned_cols=80 Identities=30% Similarity=0.496 Sum_probs=46.6
Q ss_pred hhhhhhhhhHHHHHHHHhHHh---HHHHH-------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGE---LQEER-------ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEEN 792 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~---~~~e~-------~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~ 792 (826)
+..+.+||..|.|=|.+.+++ |++++ ...+.+..++..++++|..+..|.+.|-.-|..= .+|-..
T Consensus 50 m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kl----e~Erde 125 (201)
T PF13851_consen 50 MAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKL----EQERDE 125 (201)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 444555555555555555544 33333 2233566777778888888888888887777643 233344
Q ss_pred HHHHHHHHHHHHHH
Q 003366 793 LRKKIKDASDTIQD 806 (826)
Q Consensus 793 lr~kl~~a~~~i~~ 806 (826)
|..|...+...+|.
T Consensus 126 L~~kf~~~i~evqQ 139 (201)
T PF13851_consen 126 LYRKFESAIQEVQQ 139 (201)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666655555543
No 149
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=81.86 E-value=17 Score=43.36 Aligned_cols=97 Identities=24% Similarity=0.403 Sum_probs=71.5
Q ss_pred cchhhhhhhhhhhHHHHHHHHhHHhH---HHHHHhhhcHHHHHHHHHHHHHHHH--------------HHHH---HHHHH
Q 003366 719 LGANLGQLKQENHELKKRLEKKEGEL---QEERERCRSLEAQLKVMQQTIEELN--------------KEQE---SLIDI 778 (826)
Q Consensus 719 ~~~~~~~~~~e~~~~~~~~~~~~~~~---~~e~~~~~~l~~~~~~~~~~~~~~~--------------keq~---~li~~ 778 (826)
|...|.+++++|..|+.-|..+..+. ..|.+..+.++.+|++++++++++. ++.+ .=++.
T Consensus 315 l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~lee 394 (569)
T PRK04778 315 LPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEE 394 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 34458899999999999999998883 5667777777777777766665322 2222 23456
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003366 779 FAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLE 815 (826)
Q Consensus 779 f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~ 815 (826)
|.+++..-....+.||+.-.+|-+.|+.+-.+|+...
T Consensus 395 ie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ik 431 (569)
T PRK04778 395 IEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIK 431 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777778888899999999999988888887554
No 150
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=81.75 E-value=16 Score=40.03 Aligned_cols=63 Identities=21% Similarity=0.262 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 003366 754 LEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 816 (826)
Q Consensus 754 l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~~ 816 (826)
|++|+.+++-.-..|.-||+.+.+-|---|...-+-++.|+.-|-..-..-..|-+.|+.||.
T Consensus 57 ~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQ 119 (333)
T KOG1853|consen 57 LETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQ 119 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444556679999999999999998888888887665433333344445555553
No 151
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=81.44 E-value=15 Score=40.75 Aligned_cols=41 Identities=32% Similarity=0.384 Sum_probs=24.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 003366 776 IDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 816 (826)
Q Consensus 776 i~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~~ 816 (826)
|..+..+-.....|-+.|..++++....+++++++|+.+++
T Consensus 225 i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~ 265 (325)
T PF08317_consen 225 IEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEK 265 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555566666666666666666666666654
No 152
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=81.44 E-value=22 Score=37.45 Aligned_cols=62 Identities=27% Similarity=0.410 Sum_probs=44.3
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 750 RCRSLEAQLKVMQQTIEELNKEQESL---IDIFAEERDRREREEENLRKKIKDASDTIQDLLDKI 811 (826)
Q Consensus 750 ~~~~l~~~~~~~~~~~~~~~keq~~l---i~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~ 811 (826)
-+++||++-.-+..+-..+++||-+| |..|.||-..--.|-+.|.++.++-......|--||
T Consensus 75 ~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 75 LAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 34455555555556667788888887 578888888888888888888887766666666555
No 153
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=81.42 E-value=11 Score=44.11 Aligned_cols=80 Identities=24% Similarity=0.316 Sum_probs=50.5
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASD 802 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~ 802 (826)
|.-|--+..+++.+|..++.+=..-++.|+.|..|.+++-++|.. .++-||.+-.+|.+.|...+.....
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~----------av~~~~~~~~~~~~ql~~~~~~~~~ 130 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQ----------AVQSETQELTKEIEQLKSERQQLQG 130 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH----------HHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 333444446677777777665444344444555555555554443 3455677777777888888888888
Q ss_pred HHHHHHHHHh
Q 003366 803 TIQDLLDKIK 812 (826)
Q Consensus 803 ~i~~~~~~~~ 812 (826)
.|++|..||.
T Consensus 131 ~l~~l~~~l~ 140 (472)
T TIGR03752 131 LIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHh
Confidence 8889888885
No 154
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=81.20 E-value=4.8 Score=50.04 Aligned_cols=97 Identities=24% Similarity=0.335 Sum_probs=76.3
Q ss_pred ccCCCCcccccccchhhhhhh-------hhhhHHHHHHHHhHHhHH----HHHHhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 003366 707 VNYPEHFLSDCSLGANLGQLK-------QENHELKKRLEKKEGELQ----EERERCRSLEAQLKVMQQTIEELNKEQESL 775 (826)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~-------~e~~~~~~~~~~~~~~~~----~e~~~~~~l~~~~~~~~~~~~~~~keq~~l 775 (826)
++|=.-++.+. ++.||+|| +|.++++=|+...|..|. .+=++.+.+++.+++.++.|-.-.||-+-.
T Consensus 950 aegL~~tle~r--e~eikeLkk~aKmkqeelSe~qvRldmaEkkLss~~k~~~h~v~~~~ek~ee~~a~lr~Ke~efeet 1027 (1243)
T KOG0971|consen 950 AEGLGLTLEDR--ETEIKELKKSAKMKQEELSEAQVRLDLAEKKLSSAAKDADHRVEKVQEKLEETQALLRKKEKEFEET 1027 (1243)
T ss_pred hhhhhhhHHhh--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566665 67787776 467777778877777764 344788889999999999998888999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 003366 776 IDIFAEERDRREREEENLRKKIKDASDTIQ 805 (826)
Q Consensus 776 i~~f~eer~rr~~e~~~lr~kl~~a~~~i~ 805 (826)
.|.+.-+-+.-+.|.+.|+.+|+--++-||
T Consensus 1028 mdaLq~di~~lEsek~elKqrl~~~~~k~q 1057 (1243)
T KOG0971|consen 1028 MDALQADIDQLESEKAELKQRLNSQSKKTQ 1057 (1243)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhhcccccC
Confidence 999999999999999999999976665544
No 155
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=81.06 E-value=31 Score=34.31 Aligned_cols=51 Identities=22% Similarity=0.393 Sum_probs=29.7
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQE 773 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~ 773 (826)
..+|...+..|..|+..+|.++..=-.|+..|+.+|+.++.+|.+++...+
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le 66 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE 66 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666554445666666666666665555544433
No 156
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=80.95 E-value=32 Score=36.04 Aligned_cols=50 Identities=32% Similarity=0.434 Sum_probs=35.3
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 003366 722 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKE 771 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~ke 771 (826)
.|+.||+|..++|.+....+..+..=...++.|.+-|+.|++..+++.++
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~ 77 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQ 77 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 69999999999999988888776554455666655555555555555443
No 157
>PRK02224 chromosome segregation protein; Provisional
Probab=80.91 E-value=18 Score=44.72 Aligned_cols=32 Identities=6% Similarity=0.237 Sum_probs=14.1
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFA 780 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~ 780 (826)
.....|.+++..++++++.+.++.+.|-+.+.
T Consensus 213 ~~l~el~~~i~~~~~~~~~l~~~l~~l~~~~~ 244 (880)
T PRK02224 213 SELAELDEEIERYEEQREQARETRDEADEVLE 244 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444443
No 158
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=80.62 E-value=13 Score=48.49 Aligned_cols=60 Identities=15% Similarity=0.171 Sum_probs=44.9
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003366 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLL 808 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~ 808 (826)
+.+..|.++++++.++|+.+..+.+.+..-+.+-|.+++.+++.++.++.....++++|-
T Consensus 895 ~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 954 (1311)
T TIGR00606 895 TEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIH 954 (1311)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566777778888888888889999999999999999998877666655443
No 159
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=80.61 E-value=15 Score=34.03 Aligned_cols=98 Identities=22% Similarity=0.397 Sum_probs=54.6
Q ss_pred hhhhhhhhhHHHHHHHHhH--HhHHHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKE--GELQEER----ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKK 796 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~--~~~~~e~----~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~k 796 (826)
|+.+++--...++.|.++- ...-.++ ++.+.|..++++++.+-.++.|+=-.+...= +++..--.|-..|+++
T Consensus 4 ik~ir~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~-~~~~~l~~e~~~lk~~ 82 (108)
T PF02403_consen 4 IKLIRENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG-EDAEELKAEVKELKEE 82 (108)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT-CCTHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc-ccHHHHHHHHHHHHHH
Confidence 5566665556677777663 1222222 5556666666666655555554422222211 4555556677777888
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCc
Q 003366 797 IKDASDTIQDLLDKIKLLEKMKTPSI 822 (826)
Q Consensus 797 l~~a~~~i~~~~~~~~~~~~~~~~~~ 822 (826)
+++.-..+.++-+++..+- +..||+
T Consensus 83 i~~le~~~~~~e~~l~~~l-~~iPNi 107 (108)
T PF02403_consen 83 IKELEEQLKELEEELNELL-LSIPNI 107 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHH-CTS---
T ss_pred HHHHHHHHHHHHHHHHHHH-HcCCCC
Confidence 8777777777777777654 555653
No 160
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=80.51 E-value=16 Score=37.09 Aligned_cols=52 Identities=33% Similarity=0.479 Sum_probs=39.5
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHH
Q 003366 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLR-KKIKDASDTI 804 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr-~kl~~a~~~i 804 (826)
--|+.-|.++.+++.+.+|.|||-..|+..+-| --.|-|.|| +||++-|.+|
T Consensus 105 ~~cqKKEkEykealea~nEknkeK~~Lv~~L~e----Lv~eSE~~rmKKLEELsk~i 157 (159)
T PF04949_consen 105 QSCQKKEKEYKEALEAFNEKNKEKAQLVTRLME----LVSESERLRMKKLEELSKEI 157 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhc
Confidence 567777888888888999999998888877765 344555565 6788888776
No 161
>PRK09039 hypothetical protein; Validated
Probab=80.46 E-value=13 Score=41.71 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=22.6
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 733 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDI 778 (826)
Q Consensus 733 ~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~ 778 (826)
+..|+...+++|..++..-...--+++-+++||+.+.+...+|=..
T Consensus 114 ~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~ 159 (343)
T PRK09039 114 AEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAA 159 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333433344444444333333445566667777766665544433
No 162
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=80.38 E-value=8.6 Score=34.59 Aligned_cols=26 Identities=38% Similarity=0.457 Sum_probs=23.6
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHH
Q 003366 720 GANLGQLKQENHELKKRLEKKEGELQ 745 (826)
Q Consensus 720 ~~~~~~~~~e~~~~~~~~~~~~~~~~ 745 (826)
+..|..|+.||=.||=|+--+|+.|+
T Consensus 6 e~~i~~L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 6 EEQIDKLKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 56799999999999999999999887
No 163
>PRK09039 hypothetical protein; Validated
Probab=80.15 E-value=21 Score=40.16 Aligned_cols=59 Identities=15% Similarity=0.257 Sum_probs=47.4
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE 781 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~e 781 (826)
|..+++|..+|..+|..+-+.|.-|+.++..|+.+|.+++.+++.+.++.+.|-..+++
T Consensus 48 i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~ 106 (343)
T PRK09039 48 ISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAE 106 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55566677777777777777778888999999999999999999888888888887764
No 164
>PRK09343 prefoldin subunit beta; Provisional
Probab=79.86 E-value=37 Score=32.85 Aligned_cols=84 Identities=20% Similarity=0.365 Sum_probs=55.1
Q ss_pred hhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHH
Q 003366 729 ENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEE-------------------------LNKEQESLIDIFAEER 783 (826)
Q Consensus 729 e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~-------------------------~~keq~~li~~f~eer 783 (826)
+...+-..++..+..++.=...+..|+.++.+++..++| +.++.+.=++.+..+-
T Consensus 8 ~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~i 87 (121)
T PRK09343 8 EVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELRS 87 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555544445555555555555544444 4455555667777788
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003366 784 DRREREEENLRKKIKDASDTIQDLLDKIK 812 (826)
Q Consensus 784 ~rr~~e~~~lr~kl~~a~~~i~~~~~~~~ 812 (826)
.+-+..++-|+++|++.-+.|++++.+..
T Consensus 88 k~lekq~~~l~~~l~e~q~~l~~ll~~~~ 116 (121)
T PRK09343 88 RTLEKQEKKLREKLKELQAKINEMLSKYY 116 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88888889999999999999999988765
No 165
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=79.61 E-value=38 Score=33.75 Aligned_cols=16 Identities=44% Similarity=0.563 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 003366 754 LEAQLKVMQQTIEELN 769 (826)
Q Consensus 754 l~~~~~~~~~~~~~~~ 769 (826)
|+++|.+++.++++..
T Consensus 54 ~~~~l~~~k~~lee~~ 69 (143)
T PF12718_consen 54 LEEQLKEAKEKLEESE 69 (143)
T ss_pred HHHHHHHHHHHHHhHH
Confidence 3444444444444433
No 166
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=79.53 E-value=6.1 Score=44.04 Aligned_cols=72 Identities=25% Similarity=0.419 Sum_probs=46.3
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIK 798 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~ 798 (826)
|+..+++..++.++|..++.+++.-......|+.+++..+++|+.+.+ ||+.++.|+.|-...-+.|..+++
T Consensus 237 L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~----Li~~L~~E~~RW~~~~~~l~~~~~ 308 (344)
T PF12777_consen 237 LAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEK----LISGLSGEKERWSEQIEELEEQLK 308 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCCHHHHHCCHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHH----HHhhhcchhhhHHHHHHHHHHHhc
Confidence 334444444444444444444444334455666666666666666654 999999999999988888887776
No 167
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=79.25 E-value=32 Score=38.17 Aligned_cols=13 Identities=15% Similarity=0.255 Sum_probs=8.1
Q ss_pred hhhHHHHHHHHhh
Q 003366 384 RHSLRSYASILYL 396 (826)
Q Consensus 384 ~~SLRaYLSILYL 396 (826)
..||..+|.+.=+
T Consensus 13 ~isL~~FL~~~~I 25 (325)
T PF08317_consen 13 PISLQDFLNMTGI 25 (325)
T ss_pred CcCHHHHHHHhCc
Confidence 3677777766543
No 168
>PRK00106 hypothetical protein; Provisional
Probab=79.15 E-value=28 Score=41.68 Aligned_cols=16 Identities=0% Similarity=0.092 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 003366 792 NLRKKIKDASDTIQDL 807 (826)
Q Consensus 792 ~lr~kl~~a~~~i~~~ 807 (826)
.|.++.+++...+++.
T Consensus 140 eLee~~~~~~~~~~~~ 155 (535)
T PRK00106 140 HIDEREEQVEKLEEQK 155 (535)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333334333
No 169
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=79.13 E-value=20 Score=45.65 Aligned_cols=56 Identities=29% Similarity=0.417 Sum_probs=47.1
Q ss_pred HhhhcHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 003366 749 ERCRSLEAQLKVMQQTIEELN---KEQESLIDIFAEERDRREREEENLRKKIKDASDTI 804 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~~---keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i 804 (826)
++-..|.+.+++.+.++++++ ++=|+-|+-+..|=+++|.|-+++|+-|.++-...
T Consensus 295 ek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~ 353 (1074)
T KOG0250|consen 295 EKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREV 353 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 667778888888888999999 88999999999999999999999888776655533
No 170
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=79.12 E-value=22 Score=44.27 Aligned_cols=10 Identities=30% Similarity=0.481 Sum_probs=5.2
Q ss_pred EEEEEECCCC
Q 003366 189 MLLIEDNGGG 198 (826)
Q Consensus 189 ~L~I~DNG~G 198 (826)
.+.|--||.|
T Consensus 26 ~~i~G~NGsG 35 (1179)
T TIGR02168 26 TGIVGPNGCG 35 (1179)
T ss_pred EEEECCCCCC
Confidence 4455555555
No 171
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=79.11 E-value=6.4 Score=48.68 Aligned_cols=93 Identities=27% Similarity=0.412 Sum_probs=55.7
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEE-RDRREREEENLRKKIKDAS 801 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~ee-r~rr~~e~~~lr~kl~~a~ 801 (826)
+.-++.|+.+|...+..+|++|+.|+--|.-++.+-++++-+|+...++....-.. .++ .-+-+.|-..-..||-|.-
T Consensus 668 ~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~-~~~~k~kqe~EiaaAA~KLAECQ 746 (769)
T PF05911_consen 668 LKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLA-NEDKKIKQEKEIAAAAEKLAECQ 746 (769)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhcc-ccccccchHHHHHHHHHHHHHHH
Confidence 44556667777777777777777776444444444444444444443332211111 222 2233446667778999999
Q ss_pred HHHHHHHHHHhhhhh
Q 003366 802 DTIQDLLDKIKLLEK 816 (826)
Q Consensus 802 ~~i~~~~~~~~~~~~ 816 (826)
.||-.|..||++|..
T Consensus 747 eTI~sLGkQLksLa~ 761 (769)
T PF05911_consen 747 ETIASLGKQLKSLAT 761 (769)
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999998863
No 172
>PF13256 DUF4047: Domain of unknown function (DUF4047)
Probab=79.09 E-value=25 Score=34.57 Aligned_cols=95 Identities=18% Similarity=0.277 Sum_probs=76.6
Q ss_pred ccccccchhhhhhhhhhhHHHHHHHHhHHhHHHHH--HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 003366 714 LSDCSLGANLGQLKQENHELKKRLEKKEGELQEER--ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEE 791 (826)
Q Consensus 714 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~--~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~ 791 (826)
|-.| .| |..|+++-..-++-+.+--+.|..+. +-..-|+.++..-+++.|..--|-++|-.|+.|=-+---|=+|
T Consensus 23 iIFP--kT-I~~L~e~A~qh~~~Il~eye~mk~~~~~~Sie~leq~~~~w~~~rEki~~e~eaLQ~IY~eie~~ynq~qe 99 (125)
T PF13256_consen 23 IIFP--KT-IDTLKEQAEQHKEQILHEYEGMKKKVKVTSIEELEQAIVEWKQGREKIVAEREALQNIYTEIEDYYNQIQE 99 (125)
T ss_pred hccH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445 44 88999999888888888888887777 5566678889999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 003366 792 NLRKKIKDASDTIQDLLDKIKLL 814 (826)
Q Consensus 792 ~lr~kl~~a~~~i~~~~~~~~~~ 814 (826)
||+. .-+..+++++--+|+.
T Consensus 100 ~~k~---~~~~s~kqv~~yvn~g 119 (125)
T PF13256_consen 100 ELKV---NKSESVKQVLQYVNAG 119 (125)
T ss_pred Hhcc---cchHHHHHHHHHHHHh
Confidence 8874 3355667777777654
No 173
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=79.08 E-value=32 Score=38.46 Aligned_cols=40 Identities=28% Similarity=0.301 Sum_probs=25.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 003366 777 DIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 816 (826)
Q Consensus 777 ~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~~ 816 (826)
.++.-+-..-..|-+.|+.++++.-.-++++.++|+.+++
T Consensus 221 ~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 221 MIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444555666777777777777777777777765
No 174
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=79.06 E-value=11 Score=36.78 Aligned_cols=74 Identities=20% Similarity=0.308 Sum_probs=61.1
Q ss_pred hhhhhhhhHHHHHHHHhHHhHHHHH-HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 003366 724 GQLKQENHELKKRLEKKEGELQEER-ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKI 797 (826)
Q Consensus 724 ~~~~~e~~~~~~~~~~~~~~~~~e~-~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl 797 (826)
.||++.+.-|+|-+.-+|..|+.=+ |+|--.++....-||.+|...-.--.+|-+|.-|++.-..|-+.|+.-|
T Consensus 45 qqLreQqk~L~e~i~~LE~RLRaGlCDRC~VtqE~akK~qqefe~s~~qsLq~i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 45 QQLREQQKTLHENIKVLENRLRAGLCDRCTVTQELAKKKQQEFESSHLQSLQHIFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 4688888888998888888886655 9999888888888889998888888889999999998877766665433
No 175
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=78.71 E-value=18 Score=40.70 Aligned_cols=71 Identities=30% Similarity=0.508 Sum_probs=51.6
Q ss_pred HHHHHhhhcHHHHHH----HHHHHHHHHH--------------HHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHH
Q 003366 745 QEERERCRSLEAQLK----VMQQTIEELN--------------KEQESLIDIFAEERDRR---EREEENLRKKIKDASDT 803 (826)
Q Consensus 745 ~~e~~~~~~l~~~~~----~~~~~~~~~~--------------keq~~li~~f~eer~rr---~~e~~~lr~kl~~a~~~ 803 (826)
+.|+|.-|.+.+||+ .++++.++++ +++.+|+.++.+=|++- ..|.+.||.||.||-.-
T Consensus 22 q~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD 101 (319)
T PF09789_consen 22 QSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGD 101 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 666676677777775 4455666666 57888888888766653 45667899999999888
Q ss_pred HHHHHHHHhhhh
Q 003366 804 IQDLLDKIKLLE 815 (826)
Q Consensus 804 i~~~~~~~~~~~ 815 (826)
|+=|-+++...+
T Consensus 102 ~KlLR~~la~~r 113 (319)
T PF09789_consen 102 IKLLREKLARQR 113 (319)
T ss_pred HHHHHHHHHhhh
Confidence 888888777544
No 176
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=78.64 E-value=36 Score=35.60 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=10.4
Q ss_pred hhhhhhhhhhHHHHHHHHhHH
Q 003366 722 NLGQLKQENHELKKRLEKKEG 742 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~~ 742 (826)
+|.+-.+|..-|+++|.+.++
T Consensus 62 ll~~h~eEvr~Lr~~LR~~q~ 82 (194)
T PF15619_consen 62 LLQRHNEEVRVLRERLRKSQE 82 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555554443
No 177
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=78.62 E-value=5.1 Score=39.78 Aligned_cols=87 Identities=20% Similarity=0.182 Sum_probs=52.8
Q ss_pred ccHHHHHHHHhccchhhhhCCC---ceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccC
Q 003366 151 KWALGAFAELLDNSLDEVCNGA---TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGN 227 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gA---t~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~ 227 (826)
...--|+.|++.|++.+.-+.+ ..|.|.+... ++...+.|.|-|.| .+++...+..++... ..-..| |.
T Consensus 39 ~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~--~~~~~i~i~D~G~~--~~~~~~~~~~~~~~~--~~~~~~--G~ 110 (146)
T COG2172 39 ADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLD--DGKLEIRIWDQGPG--IEDLEESLGPGDTTA--EGLQEG--GL 110 (146)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEc--CCeEEEEEEeCCCC--CCCHHHhcCCCCCCC--cccccc--cc
Confidence 4455799999999999843211 3466766554 46789999999944 455555555553222 122233 44
Q ss_pred cccccccccCCeEEEEeee
Q 003366 228 GFKTSTMRLGADVIVFSCC 246 (826)
Q Consensus 228 GfKsAsmrLG~~v~V~SK~ 246 (826)
||. ...++-++|.+....
T Consensus 111 Gl~-l~~~~~D~~~~~~~~ 128 (146)
T COG2172 111 GLF-LAKRLMDEFSYERSE 128 (146)
T ss_pred cHH-HHhhhheeEEEEecc
Confidence 443 233566777777443
No 178
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=78.60 E-value=21 Score=46.03 Aligned_cols=63 Identities=27% Similarity=0.457 Sum_probs=34.1
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003366 752 RSLEAQLKVMQQTIEELNKEQESLIDIFAEERDR---REREEENLRKKIKDASDTIQDLLDKIKLL 814 (826)
Q Consensus 752 ~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~r---r~~e~~~lr~kl~~a~~~i~~~~~~~~~~ 814 (826)
..++.++++++.++++++++=..|-+.+.+-+.. -+.+-..|+.++.++...|+.+.++++.+
T Consensus 852 ~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l 917 (1163)
T COG1196 852 EELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEEL 917 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555544444333 33444445556666677777776666654
No 179
>PRK02224 chromosome segregation protein; Provisional
Probab=78.55 E-value=12 Score=46.14 Aligned_cols=42 Identities=24% Similarity=0.397 Sum_probs=16.5
Q ss_pred hhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 003366 728 QENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELN 769 (826)
Q Consensus 728 ~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~ 769 (826)
++...+.+++...+..+..-.++++.++.++..++.+++.++
T Consensus 258 ~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~ 299 (880)
T PRK02224 258 AEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLL 299 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444443333323444444444444443333333
No 180
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=78.53 E-value=30 Score=38.80 Aligned_cols=84 Identities=24% Similarity=0.373 Sum_probs=63.4
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHHHHHHHHHH
Q 003366 733 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRER---EEENLRKKIKDASDTIQDLLD 809 (826)
Q Consensus 733 ~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~---e~~~lr~kl~~a~~~i~~~~~ 809 (826)
|.+=|.++.++..+-.+..-+|..|+-++|+++...--|-|-|.-.+.+.++...+ |-..|+.|..|......+.=+
T Consensus 218 LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQE 297 (306)
T PF04849_consen 218 LSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQE 297 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444333335556778888888888888888888888888888877664 888999999999999999999
Q ss_pred HHhhhhh
Q 003366 810 KIKLLEK 816 (826)
Q Consensus 810 ~~~~~~~ 816 (826)
.|+.+++
T Consensus 298 Elk~lR~ 304 (306)
T PF04849_consen 298 ELKTLRK 304 (306)
T ss_pred HHHHhhC
Confidence 9988764
No 181
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=78.49 E-value=23 Score=38.38 Aligned_cols=63 Identities=17% Similarity=0.326 Sum_probs=27.3
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003366 750 RCRSLEAQLKVMQQTIEELNKEQESLIDIFA-EERDRREREEENLRKKIKDASDTIQDLLDKIKLLE 815 (826)
Q Consensus 750 ~~~~l~~~~~~~~~~~~~~~keq~~li~~f~-eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~ 815 (826)
.-+.++..++++.++++.+.+-| -.++. .|.+.=.+|...+..++..+...|.+|++.+..++
T Consensus 60 qv~~~e~ei~~~r~r~~~~e~kl---~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~ 123 (239)
T COG1579 60 QVSQLESEIQEIRERIKRAEEKL---SAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLE 123 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555444333 11221 12222334444444444444444444444444433
No 182
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=78.47 E-value=20 Score=46.26 Aligned_cols=94 Identities=34% Similarity=0.512 Sum_probs=50.7
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRE---REEENLRKKIKD 799 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~---~e~~~lr~kl~~ 799 (826)
+..|+.+..+|++++.++...+..=..+...++.++.+.+.++++++.+-..|-+...+.+++.. .+...++.++.+
T Consensus 399 l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (1163)
T COG1196 399 LEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQR 478 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443333555556666666566666666666666666666555443 333355556666
Q ss_pred HHHHHHHHHHHHhhhhh
Q 003366 800 ASDTIQDLLDKIKLLEK 816 (826)
Q Consensus 800 a~~~i~~~~~~~~~~~~ 816 (826)
+...++++..++..++.
T Consensus 479 ~~~~l~~~~~~~~~l~~ 495 (1163)
T COG1196 479 LEKELSSLEARLDRLEA 495 (1163)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666555555443
No 183
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=78.39 E-value=2 Score=38.93 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=21.9
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHH
Q 003366 722 NLGQLKQENHELKKRLEKKEGELQE 746 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~~~~~~ 746 (826)
+|..|.+||..||+||+|+|++|++
T Consensus 1 li~ei~eEn~~Lk~eiqkle~ELq~ 25 (76)
T PF07334_consen 1 LIHEIQEENARLKEEIQKLEAELQQ 25 (76)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677899999999999999988865
No 184
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.77 E-value=13 Score=46.04 Aligned_cols=40 Identities=28% Similarity=0.434 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 003366 767 ELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDL 807 (826)
Q Consensus 767 ~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~ 807 (826)
.+|+|||-++- .-+--..+.+|++.|..|++.-+--|||+
T Consensus 424 Qk~reqe~iv~-~nak~~ql~~eletLn~k~qqls~kl~Dv 463 (1118)
T KOG1029|consen 424 QKNREQEWIVY-LNAKKKQLQQELETLNFKLQQLSGKLQDV 463 (1118)
T ss_pred hhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 44566665544 33444567788888888888887777664
No 185
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=77.68 E-value=38 Score=35.83 Aligned_cols=42 Identities=21% Similarity=0.463 Sum_probs=17.6
Q ss_pred hhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHH
Q 003366 725 QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIE 766 (826)
Q Consensus 725 ~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~ 766 (826)
+++..+..|++++.++.+.+..++++...+.+.++..++.|.
T Consensus 67 ~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 67 ELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444333
No 186
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=77.65 E-value=26 Score=43.69 Aligned_cols=14 Identities=14% Similarity=0.249 Sum_probs=6.3
Q ss_pred CCCCCCHHHHhhhc
Q 003366 195 NGGGMNPDKMRHCM 208 (826)
Q Consensus 195 NG~GMs~eeL~~~L 208 (826)
||.-.+..++...|
T Consensus 115 ~~~~~~~~~~~~~l 128 (1179)
T TIGR02168 115 NGQPCRLKDIQDLF 128 (1179)
T ss_pred CCCcccHHHHHHHH
Confidence 44444444444433
No 187
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=77.56 E-value=24 Score=39.44 Aligned_cols=15 Identities=33% Similarity=0.689 Sum_probs=7.4
Q ss_pred HHHHHHHHhhhhhcC
Q 003366 804 IQDLLDKIKLLEKMK 818 (826)
Q Consensus 804 i~~~~~~~~~~~~~~ 818 (826)
|-.|.++++++++..
T Consensus 273 i~~Lk~~~~~Le~l~ 287 (312)
T smart00787 273 IEKLKEQLKLLQSLT 287 (312)
T ss_pred HHHHHHHHHHHHHHh
Confidence 344555555555443
No 188
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=77.22 E-value=16 Score=35.73 Aligned_cols=63 Identities=19% Similarity=0.365 Sum_probs=40.8
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 003366 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRERE-----EENLRKKIKDASDTIQDLLDKI 811 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e-----~~~lr~kl~~a~~~i~~~~~~~ 811 (826)
+.+-+++.+|++.+.++.++-.+-..|..-|.+-..+.+.- -..|..+|..|.....+--|.|
T Consensus 48 e~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~l~~~L~~~~~e~eeeSe~l 115 (150)
T PF07200_consen 48 EQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDALLARLQAAASEAEEESEEL 115 (150)
T ss_dssp HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777888888888877777777777777665544332 2357777877777777666665
No 189
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=76.36 E-value=14 Score=45.17 Aligned_cols=89 Identities=21% Similarity=0.402 Sum_probs=52.7
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHH
Q 003366 720 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEER----DRREREEENLRK 795 (826)
Q Consensus 720 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer----~rr~~e~~~lr~ 795 (826)
...++.|.......++++..+...++....+++.|..++...++.+++.-++-..++.-+++++ ++. +|+.+|+
T Consensus 226 ~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~--~e~~~r~ 303 (670)
T KOG0239|consen 226 RRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK--KEKEERR 303 (670)
T ss_pred HHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 3345666666666666666666666655555566666655555555554444444444433333 223 5667888
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 003366 796 KIKDASDTIQDLLDKIKL 813 (826)
Q Consensus 796 kl~~a~~~i~~~~~~~~~ 813 (826)
||. |+||||.-.|+.
T Consensus 304 kL~---N~i~eLkGnIRV 318 (670)
T KOG0239|consen 304 KLH---NEILELKGNIRV 318 (670)
T ss_pred HHH---HHHHHhhcCceE
Confidence 886 789999877653
No 190
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=75.84 E-value=26 Score=39.51 Aligned_cols=88 Identities=27% Similarity=0.408 Sum_probs=57.6
Q ss_pred hhhhhhhhhhHHHHHHHHhH-----------------HhH----HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 722 NLGQLKQENHELKKRLEKKE-----------------GEL----QEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFA 780 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~-----------------~~~----~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~ 780 (826)
...||+++.+.||..+.... .+| ..=++.++.|.+++++++|+|.|+..+-..|-..++
T Consensus 31 MAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la 110 (319)
T PF09789_consen 31 MAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLA 110 (319)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 35677777777777665544 112 233389999999999999999999888777666544
Q ss_pred ---------------HHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 781 ---------------EERDRREREEENLRKKIKDASDTIQDLLD 809 (826)
Q Consensus 781 ---------------eer~rr~~e~~~lr~kl~~a~~~i~~~~~ 809 (826)
+||...=.+-|.++.|.+.--..+|.+++
T Consensus 111 ~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lD 154 (319)
T PF09789_consen 111 RQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLD 154 (319)
T ss_pred hhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555556666665555545554444
No 191
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=75.65 E-value=0.89 Score=55.08 Aligned_cols=78 Identities=29% Similarity=0.451 Sum_probs=0.0
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhh---HHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESL------IDIFAEERDRR---EREEENL 793 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~l------i~~f~eer~rr---~~e~~~l 793 (826)
+..|+.+...|++.+.++|+.+..-..+|..|+.++.+++++.+++.++-+.. +|++-++.+|- +.+.++.
T Consensus 241 ~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~Y 320 (713)
T PF05622_consen 241 LADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKY 320 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777777777666666788888888888888888777554432 57777766663 4567899
Q ss_pred HHHHHHH
Q 003366 794 RKKIKDA 800 (826)
Q Consensus 794 r~kl~~a 800 (826)
|+||+|.
T Consensus 321 KkKLed~ 327 (713)
T PF05622_consen 321 KKKLEDL 327 (713)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 9999874
No 192
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=75.54 E-value=30 Score=39.27 Aligned_cols=63 Identities=19% Similarity=0.267 Sum_probs=51.9
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKI 811 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~ 811 (826)
-|-|.=..+||.+-.+++|-|.-++.=.|....|+...+.|-..|-.-|.||..-+|+|.+.-
T Consensus 123 ~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~ey 185 (401)
T PF06785_consen 123 MKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEY 185 (401)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555667888899999999999999999988887777777788889999999999988754
No 193
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=75.39 E-value=27 Score=40.94 Aligned_cols=41 Identities=32% Similarity=0.497 Sum_probs=21.2
Q ss_pred hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 003366 731 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKE 771 (826)
Q Consensus 731 ~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~ke 771 (826)
..|..++++.+.++..|+|-++.|.+-++.-+.||++++..
T Consensus 385 ~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~ 425 (493)
T KOG0804|consen 385 QQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEER 425 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555554433
No 194
>COG4345 Uncharacterized protein conserved in archaea [Function unknown]
Probab=75.26 E-value=12 Score=38.66 Aligned_cols=52 Identities=33% Similarity=0.513 Sum_probs=35.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003366 753 SLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLE 815 (826)
Q Consensus 753 ~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~ 815 (826)
.|++.+.+++..-+++.+.-+.|+ +|-++|.+|||+|...|-.|++.+++.+
T Consensus 122 el~eK~~~~~~Everi~~~ieE~v-----------~eLe~~a~~lke~~~~i~~l~~~ik~~~ 173 (181)
T COG4345 122 ELEEKLADAMEEVERIEKTIEELV-----------SELESLANKLKEVTDVINSLVERIKQEH 173 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 344445555555555555544443 3456677799999999999999999754
No 195
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=74.90 E-value=30 Score=43.07 Aligned_cols=92 Identities=23% Similarity=0.370 Sum_probs=68.0
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhh-cHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHhhhHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEERERCR-SLEAQLKVMQQTIEELNKEQESLID----------IFAEERDRREREEE 791 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~-~l~~~~~~~~~~~~~~~keq~~li~----------~f~eer~rr~~e~~ 791 (826)
+.||+.=-.|-..||...--...+|.+|.| .||.+|.++.++|.++.-|..+|.. -+.|++.+-+.|-+
T Consensus 58 ~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~ 137 (769)
T PF05911_consen 58 MRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIE 137 (769)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 667666555555565555555578888888 9999999999999999888776655 55678888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 003366 792 NLRKKIKDASDTIQDLLDKIKLL 814 (826)
Q Consensus 792 ~lr~kl~~a~~~i~~~~~~~~~~ 814 (826)
.|..+|+-+-..+-.|.=.|..+
T Consensus 138 ~l~~~l~~~eken~~Lkye~~~~ 160 (769)
T PF05911_consen 138 DLMARLESTEKENSSLKYELHVL 160 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887766665555444443
No 196
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=74.86 E-value=37 Score=39.64 Aligned_cols=75 Identities=40% Similarity=0.405 Sum_probs=51.4
Q ss_pred hhhhhhhhHHHHHHHHhHHhH-----------------HHHH----HhhhcHHHHHHHHH-HHHHHHHHHHH-------H
Q 003366 724 GQLKQENHELKKRLEKKEGEL-----------------QEER----ERCRSLEAQLKVMQ-QTIEELNKEQE-------S 774 (826)
Q Consensus 724 ~~~~~e~~~~~~~~~~~~~~~-----------------~~e~----~~~~~l~~~~~~~~-~~~~~~~keq~-------~ 774 (826)
..||+||-.|--|...+||-+ .+|+ ++-++|+.+..++. |+|++-|-|-. +
T Consensus 246 SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlks 325 (502)
T KOG0982|consen 246 SRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKS 325 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889988888887777653 2232 77778877765554 57888777765 5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Q 003366 775 LIDIFAEERDRREREEENLRKKIK 798 (826)
Q Consensus 775 li~~f~eer~rr~~e~~~lr~kl~ 798 (826)
|+|-++||+-|--++-|.||..|.
T Consensus 326 l~dklaee~qr~sd~LE~lrlql~ 349 (502)
T KOG0982|consen 326 LADKLAEEDQRSSDLLEALRLQLI 349 (502)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHH
Confidence 678899999776555555554443
No 197
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=74.84 E-value=47 Score=35.33 Aligned_cols=81 Identities=23% Similarity=0.428 Sum_probs=55.2
Q ss_pred hhHHHHHHHHhHHhHHHHHHh----h----hcHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003366 730 NHELKKRLEKKEGELQEERER----C----RSLEAQ---------------LKVMQQTIEELNKEQESLIDIFAEERDRR 786 (826)
Q Consensus 730 ~~~~~~~~~~~~~~~~~e~~~----~----~~l~~~---------------~~~~~~~~~~~~keq~~li~~f~eer~rr 786 (826)
...+++.+.++|..|+.|..+ . +.++.+ +...+..+..++..-.+|=+.+.+||..|
T Consensus 36 ~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r 115 (247)
T PF06705_consen 36 FQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEER 115 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777777777777655511 1 122222 23444556667777778888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 787 EREEENLRKKIKDASDTIQDLLDK 810 (826)
Q Consensus 787 ~~e~~~lr~kl~~a~~~i~~~~~~ 810 (826)
....+.+...|..-..++++.++.
T Consensus 116 ~~~ie~~~~~l~~~l~~l~~~~~~ 139 (247)
T PF06705_consen 116 PQDIEELNQELVRELNELQEAFEN 139 (247)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888888777777666553
No 198
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=74.73 E-value=42 Score=33.68 Aligned_cols=84 Identities=27% Similarity=0.431 Sum_probs=53.1
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIK-DAS 801 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~-~a~ 801 (826)
|.-|+.+.+.+-..|...+.+|.-=+.....|+..++..|.++.++..-+.++...+.+ .|.+ +.+++ +++
T Consensus 54 ie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~------~E~e--k~q~~e~~~ 125 (140)
T PF10473_consen 54 IETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQE------KEQE--KVQLKEESK 125 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH------HHHH--HHHHHHHHH
Confidence 34455555555555555555544434556778999999999999998888777666653 2223 44444 566
Q ss_pred HHHHHHHHHHhhh
Q 003366 802 DTIQDLLDKIKLL 814 (826)
Q Consensus 802 ~~i~~~~~~~~~~ 814 (826)
..+..|..+++.+
T Consensus 126 ~~ve~L~~ql~~L 138 (140)
T PF10473_consen 126 SAVEMLQKQLKEL 138 (140)
T ss_pred HHHHHHHHHHhhh
Confidence 6677777776644
No 199
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=74.70 E-value=52 Score=32.06 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=17.5
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHHH
Q 003366 722 NLGQLKQENHELKKRLEKKEGELQEERE 749 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~ 749 (826)
+.++|+++...+...|+.++.+++.+..
T Consensus 37 ~~~~l~~~~~~~~~~l~~~~~el~~~~~ 64 (158)
T PF03938_consen 37 AQAKLQEKFKALQKELQAKQKELQKLQQ 64 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666655553
No 200
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=74.64 E-value=13 Score=40.25 Aligned_cols=84 Identities=26% Similarity=0.416 Sum_probs=56.5
Q ss_pred hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHH----------------------------------HHHHHHH
Q 003366 731 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELN----------------------------------KEQESLI 776 (826)
Q Consensus 731 ~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~----------------------------------keq~~li 776 (826)
.+|++.|...+.++++-.+-+..||.-|..+++...... -...+|+
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siL 81 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSIL 81 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHH
Confidence 356666666677776666777777777777775422211 1456899
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003366 777 DIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLL 814 (826)
Q Consensus 777 ~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~ 814 (826)
.|..--|||..+--..|..-|...-.+|+.|-..|..|
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L 119 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESL 119 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998877777776666666666655444433
No 201
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=74.45 E-value=31 Score=42.97 Aligned_cols=66 Identities=18% Similarity=0.178 Sum_probs=53.0
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003366 720 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDR 785 (826)
Q Consensus 720 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~r 785 (826)
+..+++++-...+|.-+++.+|-+++.=-+-..-++.++.+++-.||+++-+-+-|++.++--|+.
T Consensus 98 Eddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~e 163 (1265)
T KOG0976|consen 98 EDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHD 163 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHH
Confidence 445788888888888888888888776667777888888888889999999999998877766553
No 202
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=73.98 E-value=42 Score=41.27 Aligned_cols=85 Identities=31% Similarity=0.402 Sum_probs=56.8
Q ss_pred cccccc-chhhhhhhhhhhHHHHHHHHhHHhH-HHHHHhhhcHHHHH--------------------HHHHHHHHHHHHH
Q 003366 714 LSDCSL-GANLGQLKQENHELKKRLEKKEGEL-QEERERCRSLEAQL--------------------KVMQQTIEELNKE 771 (826)
Q Consensus 714 ~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~-~~e~~~~~~l~~~~--------------------~~~~~~~~~~~ke 771 (826)
+.++++ -+.|.+++++...|.+.|.++|..| +-|+.|.-.+++++ +++-|.|-++.|.
T Consensus 338 ~~~~d~~q~eLdK~~~~i~~Ln~~leaReaqll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva~lEkK 417 (961)
T KOG4673|consen 338 VSDSDDVQLELDKTKKEIKMLNNALEAREAQLLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQRVATLEKK 417 (961)
T ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHHHHHHHHHHHH
Confidence 444444 5678999999999999999999885 55555555444443 4455555555555
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 003366 772 QESLIDIFAEERDRREREEENLRKKIKDASD 802 (826)
Q Consensus 772 q~~li~~f~eer~rr~~e~~~lr~kl~~a~~ 802 (826)
=.++ --|||.-.+|-.+||+-|.-+..
T Consensus 418 vqa~----~kERDalr~e~kslk~ela~~l~ 444 (961)
T KOG4673|consen 418 VQAL----TKERDALRREQKSLKKELAAALL 444 (961)
T ss_pred HHHH----HHhHHHHHHHHHHHHHHHHHhhh
Confidence 4444 35888888888888776655443
No 203
>PLN02678 seryl-tRNA synthetase
Probab=73.86 E-value=31 Score=40.36 Aligned_cols=98 Identities=12% Similarity=0.211 Sum_probs=48.3
Q ss_pred hhhhhh---hh-hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhhhHHHHHH
Q 003366 723 LGQLKQ---EN-HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE------ERDRREREEEN 792 (826)
Q Consensus 723 ~~~~~~---e~-~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~e------er~rr~~e~~~ 792 (826)
|+-+++ +| ..+++.|.++--++. .+|+.-.|..+...+++++++++.|+-.+-..+.. ++..--+|...
T Consensus 4 ~k~ir~~~~~~~~~v~~~l~~R~~~~~-~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~ 82 (448)
T PLN02678 4 INLFREEKGGDPELIRESQRRRFASVE-LVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKE 82 (448)
T ss_pred HHHHhcccccCHHHHHHHHHhhCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 455554 44 345666666532221 14444455555555555555555555554444432 22222223445
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCc
Q 003366 793 LRKKIKDASDTIQDLLDKIKLLEKMKTPSI 822 (826)
Q Consensus 793 lr~kl~~a~~~i~~~~~~~~~~~~~~~~~~ 822 (826)
|+++++..-..++++-+++..+- +..||+
T Consensus 83 Lk~ei~~le~~~~~~~~~l~~~~-~~iPNi 111 (448)
T PLN02678 83 LKKEITEKEAEVQEAKAALDAKL-KTIGNL 111 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhCCCC
Confidence 55666666566666666665433 455554
No 204
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=73.78 E-value=32 Score=42.79 Aligned_cols=29 Identities=34% Similarity=0.400 Sum_probs=14.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 753 SLEAQLKVMQQTIEELNKEQESLIDIFAE 781 (826)
Q Consensus 753 ~l~~~~~~~~~~~~~~~keq~~li~~f~e 781 (826)
.+++..++|++-|+++++|=+.+|.-+.+
T Consensus 567 ~~~~~~~~a~~~l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 567 LLEEAEKEAQQAIKEAKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555555555555555543
No 205
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=73.03 E-value=53 Score=29.47 Aligned_cols=32 Identities=25% Similarity=0.475 Sum_probs=22.8
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003366 781 EERDRREREEENLRKKIKDASDTIQDLLDKIK 812 (826)
Q Consensus 781 eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~ 812 (826)
+|+.-=..|-+.|+.--......|.-||.+|+
T Consensus 39 ~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 39 EENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55555556666677777777788888888876
No 206
>PF09421 FRQ: Frequency clock protein; InterPro: IPR018554 The frequency clock protein, is the central component of the frq-based circadian negative feedback loop, regulates various aspects of the circadian clock in Neurospora crassa []. This protein has been shown to interact with itself via a coiled-coil [].
Probab=72.65 E-value=18 Score=45.83 Aligned_cols=45 Identities=18% Similarity=0.224 Sum_probs=33.0
Q ss_pred CcccccccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHH
Q 003366 712 HFLSDCSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQL 758 (826)
Q Consensus 712 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~ 758 (826)
...+++ ..||.-|.=||..|||+|++.+..=-..|+|-|..|.++
T Consensus 128 Ss~ddy--RSVIDDLTve~kkLK~eLkrykq~g~~~L~~dKLFEik~ 172 (989)
T PF09421_consen 128 SSADDY--RSVIDDLTVENKKLKEELKRYKQRGPAMLRKDKLFEIKI 172 (989)
T ss_pred ccchhh--hhhhhhHHHHHHHHHHHHHHhccCCchhccccceeEEEe
Confidence 445555 889999999999999999999876444444445555444
No 207
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=72.52 E-value=42 Score=41.54 Aligned_cols=65 Identities=25% Similarity=0.405 Sum_probs=42.2
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003366 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDI--------------FAE-ERDRREREEENLRKKIKDASDTIQDLLDKIKL 813 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~--------------f~e-er~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~ 813 (826)
++.+.|.+..+.+..++|++...|+.|..= .|+ | .+..+|-+.++.+|+.-...|+++..+++.
T Consensus 586 e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AE-r~~~~EL~~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 586 EERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAE-REFKKELERMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455556777777777777652 222 3 344567788888888888888888887765
Q ss_pred h
Q 003366 814 L 814 (826)
Q Consensus 814 ~ 814 (826)
.
T Consensus 665 Q 665 (717)
T PF10168_consen 665 Q 665 (717)
T ss_pred H
Confidence 3
No 208
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=71.91 E-value=30 Score=41.89 Aligned_cols=93 Identities=20% Similarity=0.289 Sum_probs=72.9
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHH----HHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 003366 720 GANLGQLKQENHELKKRLEKKEGELQEE----RERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRK 795 (826)
Q Consensus 720 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e----~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~ 795 (826)
.++|-.|..|+..|++-+.+.-.+.+.+ .+...+...|.+. -|-.|.++-+.+-...++||.....+-..|-+
T Consensus 248 q~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~---~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~ 324 (629)
T KOG0963|consen 248 QQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDS---EIAQLSNDIERLEASLVEEREKHKAQISALEK 324 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888999999999999988887665 3555665555444 44455666666667778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 003366 796 KIKDASDTIQDLLDKIKLLE 815 (826)
Q Consensus 796 kl~~a~~~i~~~~~~~~~~~ 815 (826)
+|+....+|.+|.++|+.-.
T Consensus 325 ~l~~~~~~leel~~kL~~~s 344 (629)
T KOG0963|consen 325 ELKAKISELEELKEKLNSRS 344 (629)
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999987543
No 209
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=71.59 E-value=75 Score=33.33 Aligned_cols=67 Identities=25% Similarity=0.387 Sum_probs=32.7
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003366 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFA----EERDRREREEENLRKKIKDASDTIQDLLDKIKLLE 815 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~----eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~ 815 (826)
++++.++..+.+...+|..++.+-..|-..-. .||+.-..+-+.+..||.++-..|++|--++....
T Consensus 82 ~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~ 152 (194)
T PF15619_consen 82 EQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELEN 152 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444443333333333333211 24555555666666666666666666666555443
No 210
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=71.22 E-value=40 Score=42.35 Aligned_cols=41 Identities=32% Similarity=0.398 Sum_probs=28.2
Q ss_pred hHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 740 KEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFA 780 (826)
Q Consensus 740 ~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~ 780 (826)
..++++..+++.+.++++++.++.+++.+..+++.|.+..-
T Consensus 313 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 353 (908)
T COG0419 313 LLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKN 353 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666678888888888887777777777766654443
No 211
>PHA02562 46 endonuclease subunit; Provisional
Probab=70.97 E-value=33 Score=39.89 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=8.4
Q ss_pred EEEEccccccCCcccccCC
Q 003366 332 IIIYNLWEDDQGLLELDFD 350 (826)
Q Consensus 332 III~NL~~~~~G~lELDFd 350 (826)
|.+.|+....+...+++|+
T Consensus 7 l~l~nf~s~~~~~~~i~f~ 25 (562)
T PHA02562 7 IRYKNILSVGNQPIEIQLD 25 (562)
T ss_pred EEEEcccccCCCceEEEEc
Confidence 4444554442223355554
No 212
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=70.61 E-value=23 Score=39.70 Aligned_cols=31 Identities=32% Similarity=0.554 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 003366 768 LNKEQESLIDIFAEERDRREREEENLRKKIK 798 (826)
Q Consensus 768 ~~keq~~li~~f~eer~rr~~e~~~lr~kl~ 798 (826)
+..|||+||+-+.--=+.=..|...|+.||.
T Consensus 172 LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 172 LEQEQEALVNRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455666666665555555555555555555
No 213
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=70.48 E-value=69 Score=27.48 Aligned_cols=80 Identities=25% Similarity=0.471 Sum_probs=50.6
Q ss_pred hhhhhhhHHHHHHHHhHHhH------------HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 003366 725 QLKQENHELKKRLEKKEGEL------------QEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEEN 792 (826)
Q Consensus 725 ~~~~e~~~~~~~~~~~~~~~------------~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~ 792 (826)
++.++-.+|..=|..++..| +..+.+++.+...+...+.+++.++..-..|++.-.... ..
T Consensus 5 ~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~-------~~ 77 (105)
T PF00435_consen 5 QFQQEADELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDS-------DE 77 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTH-------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcH-------HH
Confidence 34445555555555555543 556688999999999988999999988888876654443 34
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003366 793 LRKKIKDASDTIQDLLDKI 811 (826)
Q Consensus 793 lr~kl~~a~~~i~~~~~~~ 811 (826)
++.++..-...-+.|.+.+
T Consensus 78 i~~~~~~l~~~w~~l~~~~ 96 (105)
T PF00435_consen 78 IQEKLEELNQRWEALCELV 96 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445444444444444433
No 214
>PRK03918 chromosome segregation protein; Provisional
Probab=70.36 E-value=59 Score=40.08 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=21.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 003366 782 ERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 816 (826)
Q Consensus 782 er~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~~ 816 (826)
+++.-..+.+.|+.++.+....|++|-+.++.++.
T Consensus 399 ~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~~ 433 (880)
T PRK03918 399 AKEEIEEEISKITARIGELKKEIKELKKAIEELKK 433 (880)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445556666666666666677667666664
No 215
>PRK03918 chromosome segregation protein; Provisional
Probab=70.25 E-value=54 Score=40.43 Aligned_cols=9 Identities=56% Similarity=1.047 Sum_probs=4.0
Q ss_pred EEEEECCCC
Q 003366 190 LLIEDNGGG 198 (826)
Q Consensus 190 L~I~DNG~G 198 (826)
+.+.+||.|
T Consensus 27 ~i~G~nG~G 35 (880)
T PRK03918 27 LIIGQNGSG 35 (880)
T ss_pred EEEcCCCCC
Confidence 444444444
No 216
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=70.21 E-value=20 Score=36.76 Aligned_cols=35 Identities=29% Similarity=0.563 Sum_probs=30.3
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEER 783 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer 783 (826)
.+++.|+.+++.+++++.....+=++||.|+-.-|
T Consensus 118 ~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RAR 152 (161)
T TIGR02894 118 KRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRAR 152 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888999999999999999999999999985444
No 217
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=69.89 E-value=48 Score=40.79 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=20.4
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHH
Q 003366 781 EERDRREREEENLRKKIKDASDTIQD 806 (826)
Q Consensus 781 eer~rr~~e~~~lr~kl~~a~~~i~~ 806 (826)
-|-.+.++|..+||+|++.+.++.|.
T Consensus 147 ~e~~~k~ae~~~lr~k~dss~s~~q~ 172 (716)
T KOG4593|consen 147 REKEDKLAELGTLRNKLDSSLSELQW 172 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788999999999988888753
No 218
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=69.77 E-value=83 Score=34.08 Aligned_cols=66 Identities=21% Similarity=0.334 Sum_probs=32.5
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003366 750 RCRSLEAQLKVMQQTIEELNKEQESLIDIF-------AEERDRREREEENLRKKIKDASDTIQDLLDKIKLLE 815 (826)
Q Consensus 750 ~~~~l~~~~~~~~~~~~~~~keq~~li~~f-------~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~ 815 (826)
-++.+..+++.++.+|+.+.....+|-+.. ..++...+.....|...|.++-..|+..+.....|-
T Consensus 217 E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll 289 (312)
T PF00038_consen 217 ELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELL 289 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555455555444 444444444444555555555555555554444443
No 219
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=69.62 E-value=80 Score=33.54 Aligned_cols=67 Identities=24% Similarity=0.387 Sum_probs=33.2
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003366 749 ERCRSLEAQLKVMQQTIEELNKEQESLI---DIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLE 815 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~~keq~~li---~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~ 815 (826)
+++..++.++.+++..|..+.....+|= +-+++--+.-...-..|..+|++|-......-.++..|+
T Consensus 134 eR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le 203 (237)
T PF00261_consen 134 ERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLE 203 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433333321 112222244444456677777777776665555555544
No 220
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=69.58 E-value=25 Score=31.48 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=8.4
Q ss_pred hhhhhhhhhhHHHHHHHH
Q 003366 722 NLGQLKQENHELKKRLEK 739 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~ 739 (826)
.|.||.+|...|...-.+
T Consensus 13 ~Ia~L~eEGekLSk~el~ 30 (74)
T PF12329_consen 13 QIAQLMEEGEKLSKKELK 30 (74)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 355555555444433333
No 221
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=69.54 E-value=45 Score=34.33 Aligned_cols=54 Identities=33% Similarity=0.436 Sum_probs=25.3
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLI 776 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li 776 (826)
+..|+.+..+...+|..++..+..=..+|+.|+++|++.++.++.++-|-.+|=
T Consensus 104 l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~ 157 (194)
T PF08614_consen 104 LQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQ 157 (194)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555444445666666666666666666666655553
No 222
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=69.49 E-value=76 Score=33.40 Aligned_cols=76 Identities=18% Similarity=0.268 Sum_probs=42.4
Q ss_pred hhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHH
Q 003366 730 NHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEER-----DRREREEENLRKKIKDASDTI 804 (826)
Q Consensus 730 ~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer-----~rr~~e~~~lr~kl~~a~~~i 804 (826)
..-|.+|=.+.+.+|..=.+.+...+..+++.+++|.++.+|=..+|+-=-++- ..+++-++.+.+++++|-..|
T Consensus 79 ~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I 158 (204)
T PRK09174 79 GGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARI 158 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666554456666666777777888888877776665322221 122223334444555555555
Q ss_pred H
Q 003366 805 Q 805 (826)
Q Consensus 805 ~ 805 (826)
+
T Consensus 159 ~ 159 (204)
T PRK09174 159 A 159 (204)
T ss_pred H
Confidence 3
No 223
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=69.40 E-value=6.3 Score=45.13 Aligned_cols=63 Identities=25% Similarity=0.280 Sum_probs=47.7
Q ss_pred cccCchhhcccccccccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHH
Q 003366 136 VRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPD 202 (826)
Q Consensus 136 ~~v~p~fLhSNSTSH~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~e 202 (826)
.-.++.=.|-+-|...-.|--+-|++.|-.... .|+.|+|.+... +..-++.|.|||.|+++.
T Consensus 394 ~~~~~n~~~ldet~rvTLyRl~QE~LNNI~KHA--~AS~V~i~l~~~--~e~l~Lei~DdG~Gl~~~ 456 (497)
T COG3851 394 LDWRINETALDETQRVTLYRLCQELLNNICKHA--DASAVTIQLWQQ--DERLMLEIEDDGSGLPPG 456 (497)
T ss_pred eccccCcccCCcceeEeHHHHHHHHHHHHHhcc--ccceEEEEEeeC--CcEEEEEEecCCcCCCCC
Confidence 334455555666777778889999999988763 588899988653 344789999999999875
No 224
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=69.34 E-value=42 Score=37.39 Aligned_cols=20 Identities=45% Similarity=0.569 Sum_probs=9.2
Q ss_pred hhhhhhhhhHHHHHHHHhHH
Q 003366 723 LGQLKQENHELKKRLEKKEG 742 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~ 742 (826)
+++|++|..+|.+.|.++|.
T Consensus 52 l~~le~Ee~~l~~eL~~LE~ 71 (314)
T PF04111_consen 52 LEKLEQEEEELLQELEELEK 71 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 225
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=69.28 E-value=21 Score=36.49 Aligned_cols=60 Identities=27% Similarity=0.427 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 003366 754 LEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 816 (826)
Q Consensus 754 l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~~ 816 (826)
++++++.+++|.++..+..+.+ -.++-+.-..|.++|+++|+.+-..+..|.+|...+.+
T Consensus 130 ~~~~~~~~~kq~~~~~~~~~~~---~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 130 LEEKLEALKKQAESASEAAEKL---LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred HHHHHHHHHHHHHhhhhhhhhh---hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444443333333 44566677889999999999999999999999887753
No 226
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=69.21 E-value=66 Score=35.61 Aligned_cols=17 Identities=12% Similarity=0.348 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHhhh
Q 003366 798 KDASDTIQDLLDKIKLL 814 (826)
Q Consensus 798 ~~a~~~i~~~~~~~~~~ 814 (826)
.++...|.++-.++..+
T Consensus 249 ~~~~~~l~~~~~~l~~~ 265 (423)
T TIGR01843 249 TEAQARLAELRERLNKA 265 (423)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 227
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=68.79 E-value=33 Score=39.58 Aligned_cols=98 Identities=15% Similarity=0.236 Sum_probs=45.2
Q ss_pred hhhhhhhhhHHHHHHHHhHHhH---HHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGEL---QEER----ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEE-RDRREREEENLR 794 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~---~~e~----~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~ee-r~rr~~e~~~lr 794 (826)
|+-+++.-...++.|.++--+. ..++ .+.|.|..++++++.+.++..|+=-.+...= ++ ++.--.|-..|+
T Consensus 4 ik~ir~n~~~v~~~l~~R~~~~~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~-~~~~~~l~~~~~~l~ 82 (418)
T TIGR00414 4 RKLLRNNPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQK-KDKIEEIKKELKELK 82 (418)
T ss_pred HHHHHhCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-cchHHHHHHHHHHHH
Confidence 4555555555666666664221 1111 3345555555555555544444432211110 11 222222344555
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCc
Q 003366 795 KKIKDASDTIQDLLDKIKLLEKMKTPSI 822 (826)
Q Consensus 795 ~kl~~a~~~i~~~~~~~~~~~~~~~~~~ 822 (826)
++|++....++++-++++.+- ++.||.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~lPN~ 109 (418)
T TIGR00414 83 EELTELSAALKALEAELQDKL-LSIPNI 109 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhCCCC
Confidence 555555555555555555433 555554
No 228
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.74 E-value=25 Score=31.75 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=23.1
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 749 ERCRSLEAQLKVMQQTIEELNKEQESLI 776 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~~keq~~li 776 (826)
+|+.+|..+.++||.+.|.+..|.+.|-
T Consensus 32 Eknn~l~~e~q~~q~~reaL~~eneqlk 59 (79)
T COG3074 32 EKNNSLSQEVQNAQHQREALERENEQLK 59 (79)
T ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888888888777765
No 229
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=68.60 E-value=6.1 Score=38.94 Aligned_cols=40 Identities=35% Similarity=0.441 Sum_probs=29.9
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHH
Q 003366 722 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVM 761 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~ 761 (826)
.|..||.||.=|||.|-.++|.....+.-...|.+||+.+
T Consensus 86 TI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~~ 125 (126)
T PF13118_consen 86 TIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKIM 125 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4788999999999999998888766655555555665544
No 230
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=68.39 E-value=76 Score=32.90 Aligned_cols=95 Identities=18% Similarity=0.276 Sum_probs=50.3
Q ss_pred cccccccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHH----------------------HHH
Q 003366 713 FLSDCSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEE----------------------LNK 770 (826)
Q Consensus 713 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~----------------------~~k 770 (826)
.+.|| + +.|.+...++.+-|.+.+..+-.-+-..+.|+.++.++++++++ ..+
T Consensus 20 ~~EDP--~---~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~ 94 (221)
T PF04012_consen 20 KAEDP--E---KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKA 94 (221)
T ss_pred hhcCH--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566 2 55566677777777777766544333333344333333333322 233
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003366 771 EQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIK 812 (826)
Q Consensus 771 eq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~ 812 (826)
+.+..+..+.+..+.-...++.|+..|.+.-.-|+++-.+..
T Consensus 95 ~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~ 136 (221)
T PF04012_consen 95 DLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKRE 136 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555566666666666555555554443
No 231
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=68.15 E-value=90 Score=33.14 Aligned_cols=86 Identities=24% Similarity=0.374 Sum_probs=47.6
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHH----HH--H-HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQ----EE--R-ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRK 795 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~----~e--~-~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~ 795 (826)
|+.|.++...+...|+.+|..-. +| + ++.+.|+.+|.+|....+.+-.. +..+..+.++-..+-...+.
T Consensus 143 i~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~----v~~Le~~id~le~eL~~~k~ 218 (237)
T PF00261_consen 143 IKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERR----VKKLEKEIDRLEDELEKEKE 218 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555544444321 11 1 45555555555555555544332 45555666666667777777
Q ss_pred HHHHHHHHHHHHHHHHh
Q 003366 796 KIKDASDTIQDLLDKIK 812 (826)
Q Consensus 796 kl~~a~~~i~~~~~~~~ 812 (826)
|.+.....+...|.-|+
T Consensus 219 ~~~~~~~eld~~l~el~ 235 (237)
T PF00261_consen 219 KYKKVQEELDQTLNELN 235 (237)
T ss_dssp HHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 77777777766665554
No 232
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=68.00 E-value=33 Score=40.91 Aligned_cols=48 Identities=21% Similarity=0.500 Sum_probs=27.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 003366 753 SLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTI 804 (826)
Q Consensus 753 ~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i 804 (826)
.+.++++++.++|++..++|..+.+.+..=| .+|..-|++|..-...|
T Consensus 376 ~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~----~dE~~Ar~~l~~~~~~l 423 (560)
T PF06160_consen 376 EIQEELEEIEEQLEEIEEEQEEINESLQSLR----KDEKEAREKLQKLKQKL 423 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 3445556777777888888877766655443 23444455544444333
No 233
>PRK01156 chromosome segregation protein; Provisional
Probab=67.04 E-value=49 Score=41.16 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 003366 791 ENLRKKIKDASDTIQDLLDKIKLLE 815 (826)
Q Consensus 791 ~~lr~kl~~a~~~i~~~~~~~~~~~ 815 (826)
++++.|+++-...|.+|-.++..++
T Consensus 412 ~e~~~~~~~l~~~i~~l~~~i~~l~ 436 (895)
T PRK01156 412 NEINVKLQDISSKVSSLNQRIRALR 436 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666654
No 234
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=66.95 E-value=34 Score=33.82 Aligned_cols=88 Identities=24% Similarity=0.376 Sum_probs=48.1
Q ss_pred hhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHH
Q 003366 721 ANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESLIDIFAEERDR--REREEENLRKKI 797 (826)
Q Consensus 721 ~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~-~~~~~~keq~~li~~f~eer~r--r~~e~~~lr~kl 797 (826)
.-|..|.++..+|++++.+..++++.- .+.++.+.+++.+ -++.+-++--.++|-|.--... ...+..++.+-+
T Consensus 18 ~~l~~l~~~~~~l~~~~~r~~ae~en~---~~r~~~e~~~~~~~~~~~~~~~ll~v~D~l~~a~~~~~~~~~~~~~~~g~ 94 (165)
T PF01025_consen 18 EELEELEKEIEELKERLLRLQAEFENY---RKRLEKEKEEAKKYALEKFLKDLLPVLDNLERALEAAKSNEEEESLLEGL 94 (165)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC-SHHCTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHH
Confidence 347777777777777777777666532 2334444445444 3444444444444444333333 233345666666
Q ss_pred HHHHHHHHHHHHHH
Q 003366 798 KDASDTIQDLLDKI 811 (826)
Q Consensus 798 ~~a~~~i~~~~~~~ 811 (826)
+--.+.|.++|++.
T Consensus 95 ~~~~~~l~~~L~~~ 108 (165)
T PF01025_consen 95 EMILKQLEDILEKN 108 (165)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHC
Confidence 66666666666554
No 235
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=66.83 E-value=99 Score=31.51 Aligned_cols=59 Identities=19% Similarity=0.334 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003366 754 LEAQLKVMQQTIEE-LNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIK 812 (826)
Q Consensus 754 l~~~~~~~~~~~~~-~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~ 812 (826)
|..+++.++++|.+ ++|-+..+-==|.-||.|-..|...+..|+.+..+-|..-+..|+
T Consensus 85 L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr 144 (177)
T PF07798_consen 85 LQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLR 144 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443322 333333333345567777777777777787777777655555444
No 236
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=66.75 E-value=7.3 Score=47.23 Aligned_cols=70 Identities=20% Similarity=0.284 Sum_probs=47.8
Q ss_pred cccCchhhcccccccccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhcc
Q 003366 136 VRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMS 209 (826)
Q Consensus 136 ~~v~p~fLhSNSTSH~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~Ls 209 (826)
++|.| |+.-.+--.-.-.....||.||+-...+.+..|.|... ..+...++.|.|||.|+++.-+.+.+.
T Consensus 622 i~i~~--lp~v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~I~~~--r~ed~~t~sV~dng~Gi~~a~~~riF~ 691 (750)
T COG4251 622 IRIAP--LPVVAADATQLGQVFQNLIANAIKFGGPENPDIEISAE--RQEDEWTFSVRDNGIGIDPAYFERIFV 691 (750)
T ss_pred EEecc--cceeecCHHHHHHHHHHHHhhheecCCCCCCceEEeee--ccCCceEEEecCCCCCcCHHHHHHHHH
Confidence 34444 44444444444455688999999985544455666643 335678999999999999999988653
No 237
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=66.60 E-value=33 Score=35.59 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=12.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHH
Q 003366 781 EERDRREREEENLRKKIKDASDTI 804 (826)
Q Consensus 781 eer~rr~~e~~~lr~kl~~a~~~i 804 (826)
+||...-.|-+.|+++++.-...+
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el 126 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKEL 126 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555544444443
No 238
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=66.21 E-value=53 Score=29.39 Aligned_cols=65 Identities=28% Similarity=0.365 Sum_probs=40.6
Q ss_pred HHHHHhHHh---HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 003366 735 KRLEKKEGE---LQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKD 799 (826)
Q Consensus 735 ~~~~~~~~~---~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~ 799 (826)
..|..+.+. |..|-++.-.-+-++.+..++|..-+++.+.-|+-+....+.-+.+-++|+.+|+.
T Consensus 5 ~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 5 KKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444443 45555666666666667777777777777777776666666666666666666653
No 239
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=66.11 E-value=70 Score=40.10 Aligned_cols=94 Identities=23% Similarity=0.428 Sum_probs=71.8
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 003366 722 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKE---QESLIDIFAEERDRREREEENLRKKIK 798 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~ke---q~~li~~f~eer~rr~~e~~~lr~kl~ 798 (826)
=+..+..++.+++++|..+.++|..--..+--|.+.++.++..|++.+.. ...-|.-+.+|+.|--.|-+.|+.+|.
T Consensus 309 ~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d 388 (775)
T PF10174_consen 309 RLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLD 388 (775)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556667788899999999998777777778888888888888776543 234567889999999999999999888
Q ss_pred HHHHHHHHHHHHHhhhh
Q 003366 799 DASDTIQDLLDKIKLLE 815 (826)
Q Consensus 799 ~a~~~i~~~~~~~~~~~ 815 (826)
..-.-|..|..+|..|+
T Consensus 389 ~~e~ki~~Lq~kie~Le 405 (775)
T PF10174_consen 389 KKERKINVLQKKIENLE 405 (775)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777766666654443
No 240
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=66.10 E-value=1.1e+02 Score=29.54 Aligned_cols=47 Identities=17% Similarity=0.180 Sum_probs=30.6
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 733 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIF 779 (826)
Q Consensus 733 ~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f 779 (826)
|.+|=.+.++++..=.+.+...++.+.+++++|+++.+|-..+++--
T Consensus 34 l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a 80 (140)
T PRK07353 34 VEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEA 80 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554446666667777788888888887776666543
No 241
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=65.62 E-value=33 Score=41.72 Aligned_cols=67 Identities=27% Similarity=0.341 Sum_probs=46.8
Q ss_pred hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003366 731 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLL 808 (826)
Q Consensus 731 ~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~ 808 (826)
.+-++.|.-.||-||+|+-.+-+||+|--++-..+-+++= ..-+=||+++++|+ |+..+-+.||++-
T Consensus 149 e~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKL------kltalEkeq~e~E~-----K~R~se~l~qevn 215 (861)
T KOG1899|consen 149 EEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKL------KLTALEKEQNETEK-----KLRLSENLMQEVN 215 (861)
T ss_pred HHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHH------HHHHHHHHhhhHHH-----HHHhHHHHHHHHH
Confidence 4445677777888888888888888877666666655543 33445788888774 6777777777764
No 242
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=65.60 E-value=1.5e+02 Score=30.51 Aligned_cols=48 Identities=27% Similarity=0.296 Sum_probs=29.0
Q ss_pred cchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHH
Q 003366 719 LGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIE 766 (826)
Q Consensus 719 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~ 766 (826)
|..|..+-++|...|+..|..+...+..=.+..-.|+.+-.-|.+.|-
T Consensus 18 If~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~ 65 (159)
T PF05384_consen 18 IFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLA 65 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777777777665544555555555444444443
No 243
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=65.34 E-value=59 Score=35.83 Aligned_cols=63 Identities=11% Similarity=0.124 Sum_probs=30.2
Q ss_pred cccccccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 003366 713 FLSDCSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESL 775 (826)
Q Consensus 713 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~l 775 (826)
.|+...+...+.+++.+....+..|...+..+..+......++.+++.++.+++.+.++-+..
T Consensus 78 ~ld~~~~~~~l~~a~a~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~ 140 (346)
T PRK10476 78 RIDPRPYELTVAQAQADLALADAQIMTTQRSVDAERSNAASANEQVERARANAKLATRTLERL 140 (346)
T ss_pred EECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554444555555555555555544443333333333344455555555555555544433
No 244
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=65.31 E-value=52 Score=38.63 Aligned_cols=44 Identities=16% Similarity=0.298 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 003366 773 ESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 816 (826)
Q Consensus 773 ~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~~ 816 (826)
..+.+.+.+++..-..+...|..+|+++-..|++|-.+|+++..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 130 FQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45666677777777777778888888888888888888887764
No 245
>PRK12705 hypothetical protein; Provisional
Probab=64.39 E-value=32 Score=40.99 Aligned_cols=51 Identities=25% Similarity=0.324 Sum_probs=26.6
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQE 773 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~ 773 (826)
+++.++|......||.++|+.|.+..+.....+.+|+..+++|+...++.+
T Consensus 72 ~~~~~~~~~~~e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 122 (508)
T PRK12705 72 ARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELE 122 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555666666666655555444445555444444444444333
No 246
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=64.38 E-value=1.3e+02 Score=29.92 Aligned_cols=50 Identities=22% Similarity=0.171 Sum_probs=31.3
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 733 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEE 782 (826)
Q Consensus 733 ~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~ee 782 (826)
|.+|=++..+++..=-+..+..+..+++++++|.++.+|-..+++--.++
T Consensus 51 l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~ 100 (156)
T CHL00118 51 LDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQKE 100 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555444445566667777788888888888777776544433
No 247
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=64.14 E-value=67 Score=38.16 Aligned_cols=65 Identities=22% Similarity=0.358 Sum_probs=51.0
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003366 751 CRSLEAQLKVMQQTIEELNKEQESL---IDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLE 815 (826)
Q Consensus 751 ~~~l~~~~~~~~~~~~~~~keq~~l---i~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~ 815 (826)
..++..+|++++..|+.++.|-..| ++.+--|=.+--.|-..|+.++..++..|+.|-.+|+...
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r 350 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTR 350 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHH
Confidence 4556677788888887777776655 4556677778888889999999999999999999887543
No 248
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=63.84 E-value=1.7e+02 Score=30.83 Aligned_cols=95 Identities=18% Similarity=0.274 Sum_probs=55.6
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH---
Q 003366 720 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKK--- 796 (826)
Q Consensus 720 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~k--- 796 (826)
..++.+|.+|.+|...-+.....+|+.=-.....-..-.+.++++++.|..-....-.-...-+..-..=...|..|
T Consensus 66 q~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qL 145 (188)
T PF05335_consen 66 QQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQL 145 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999888888877775554444444444555555555554433333333332222222233334444
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 003366 797 IKDASDTIQDLLDKIKLL 814 (826)
Q Consensus 797 l~~a~~~i~~~~~~~~~~ 814 (826)
|..|-+-++.|..+|...
T Consensus 146 LeaAk~Rve~L~~QL~~A 163 (188)
T PF05335_consen 146 LEAAKRRVEELQRQLQAA 163 (188)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 667777777777776543
No 249
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=63.80 E-value=66 Score=42.19 Aligned_cols=13 Identities=8% Similarity=0.439 Sum_probs=5.1
Q ss_pred hhhhhHHHHHHHH
Q 003366 727 KQENHELKKRLEK 739 (826)
Q Consensus 727 ~~e~~~~~~~~~~ 739 (826)
..|...|+.+|..
T Consensus 798 ~~ei~~l~~qie~ 810 (1311)
T TIGR00606 798 QMELKDVERKIAQ 810 (1311)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444433333
No 250
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=63.78 E-value=42 Score=39.30 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003366 788 REEENLRKKIKDASDTI 804 (826)
Q Consensus 788 ~e~~~lr~kl~~a~~~i 804 (826)
+|-|+||.-|+.|-..+
T Consensus 309 kelE~lR~~L~kAEkel 325 (575)
T KOG4403|consen 309 KELEQLRVALEKAEKEL 325 (575)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46666666666665443
No 251
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=63.52 E-value=94 Score=32.04 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 766 EELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLD 809 (826)
Q Consensus 766 ~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~ 809 (826)
++.-+|...+|+++..|-.---.+-..|..|+...-..=++|++
T Consensus 136 ~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 136 EEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445555555555555544455444444443344443
No 252
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=63.36 E-value=82 Score=31.55 Aligned_cols=78 Identities=18% Similarity=0.185 Sum_probs=52.2
Q ss_pred hhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 003366 726 LKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQ 805 (826)
Q Consensus 726 ~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~ 805 (826)
+..+|++|+-.+......+..-......+..||..+++..++-+.+|..| +++-+....+|...-.+|.
T Consensus 17 ~~~~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~L-----------r~~~~~~~~~l~~re~~i~ 85 (135)
T TIGR03495 17 QSQRLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQL-----------RQQLAQARALLAQREQRIE 85 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777766666666777777777777777666666655 3344556666666677788
Q ss_pred HHHHHHhhh
Q 003366 806 DLLDKIKLL 814 (826)
Q Consensus 806 ~~~~~~~~~ 814 (826)
+|+..-..+
T Consensus 86 rL~~ENe~l 94 (135)
T TIGR03495 86 RLKRENEDL 94 (135)
T ss_pred HHHHcCHHH
Confidence 877654433
No 253
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=63.28 E-value=88 Score=28.29 Aligned_cols=76 Identities=30% Similarity=0.500 Sum_probs=51.4
Q ss_pred hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHH---H---------------HHHHHHHHHHHHhhhHHHHHH
Q 003366 731 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNK---E---------------QESLIDIFAEERDRREREEEN 792 (826)
Q Consensus 731 ~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~k---e---------------q~~li~~f~eer~rr~~e~~~ 792 (826)
.+|+.++..+...+ ..|+.++.+++-.++|+.. + -+.+++.+.+..+.-+.|.+.
T Consensus 8 ~~l~~~l~~~~~q~-------~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~ 80 (106)
T PF01920_consen 8 QELNQQLQQLEQQI-------QQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKK 80 (106)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44455554444433 3455555555555555543 2 456788888888888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 003366 793 LRKKIKDASDTIQDLLDKIKL 813 (826)
Q Consensus 793 lr~kl~~a~~~i~~~~~~~~~ 813 (826)
|.++++.....+.++-.+|+.
T Consensus 81 l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 81 LEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999888888888888874
No 254
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.87 E-value=61 Score=35.71 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=19.0
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhH
Q 003366 722 NLGQLKQENHELKKRLEKKEGEL 744 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~~~~ 744 (826)
.|.+|++|...||.+|..+...+
T Consensus 226 ~i~~lkeeia~Lkk~L~qkdq~i 248 (305)
T KOG3990|consen 226 KIQKLKEEIARLKKLLHQKDQLI 248 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHH
Confidence 58899999999999998776544
No 255
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=62.87 E-value=1.3e+02 Score=29.52 Aligned_cols=46 Identities=20% Similarity=0.258 Sum_probs=26.3
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 733 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDI 778 (826)
Q Consensus 733 ~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~ 778 (826)
|.+|=.+..+.+..=.+.+...+..+++++++|+++.+|...+++-
T Consensus 33 l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~ 78 (156)
T PRK05759 33 LEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQ 78 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444443333555556666677777777777776665543
No 256
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=62.76 E-value=8.1 Score=44.18 Aligned_cols=73 Identities=14% Similarity=0.245 Sum_probs=47.5
Q ss_pred HHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhcc-ccccccccCCcccCcccCccc
Q 003366 154 LGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMS-LGYSAKSKAANTIGQYGNGFK 230 (826)
Q Consensus 154 FgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~Ls-fG~SsK~~~~~~IGrfG~GfK 230 (826)
...|-.+|.||+-+-- ....|.|.+. ..+..-.|+|.|.|.|++.+++.+.+. |=.-+|. .....|-=|+|+.
T Consensus 344 tQVldNii~NA~KYsP-~Gg~Itv~~~--~~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkA-RsR~~gGTGLGLa 417 (459)
T COG5002 344 TQVLDNIISNALKYSP-DGGRITVSVK--QRETWVEISISDQGLGIPKEDLEKIFDRFYRVDKA-RSRKMGGTGLGLA 417 (459)
T ss_pred HHHHHHHHHHHhhcCC-CCCeEEEEEe--eeCcEEEEEEccCCCCCCchhHHHHHHHHhhhhhh-hhhcCCCCchhHH
Confidence 3567778888887722 1234555443 334556799999999999999998764 3222221 1235677788875
No 257
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=62.46 E-value=1.5e+02 Score=29.58 Aligned_cols=44 Identities=11% Similarity=0.242 Sum_probs=24.1
Q ss_pred HHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 734 KKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID 777 (826)
Q Consensus 734 ~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~ 777 (826)
.+|=.+..++|..=-+.+...++.+.+.+++|.++.+|-..+|+
T Consensus 38 ~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~ 81 (164)
T PRK14473 38 NERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVA 81 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333344555555666666667777666666655
No 258
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=62.31 E-value=35 Score=37.69 Aligned_cols=83 Identities=24% Similarity=0.309 Sum_probs=62.7
Q ss_pred ccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 003366 718 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKI 797 (826)
Q Consensus 718 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl 797 (826)
.|..+++-|++....+++||...++...+++.+.+.--.+|.+++.+++.+.++-..|-.+|..=.-|=.==|-.|+.=|
T Consensus 3 ~l~~l~~pl~e~l~~~~~~l~~~~~~~~~~~~~L~~~l~~l~~~~~~~~~l~~~~~~L~~aL~~~k~rG~wGE~~Le~iL 82 (304)
T PF02646_consen 3 QLEQLLKPLKEQLEKFEKRLEESFEQRSEEFGSLKEQLKQLSEANGEIQQLSQEASNLTSALKNSKTRGNWGEMQLERIL 82 (304)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 45667888888888888888888888777776555545556677777799999999999999866666666667777766
Q ss_pred HHH
Q 003366 798 KDA 800 (826)
Q Consensus 798 ~~a 800 (826)
+.+
T Consensus 83 e~~ 85 (304)
T PF02646_consen 83 EDS 85 (304)
T ss_pred HHc
Confidence 665
No 259
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=62.27 E-value=69 Score=32.35 Aligned_cols=67 Identities=24% Similarity=0.421 Sum_probs=50.3
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHH--------------HHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQE--------------ERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRER 788 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~--------------e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~ 788 (826)
..||+-||..|.++|..+..+|.+ -++|...+..++..+++.|....++...+-+-+......|+.
T Consensus 44 FeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k 123 (177)
T PF13870_consen 44 FEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDK 123 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999988888632 237777777888888888888887777777766665555544
Q ss_pred H
Q 003366 789 E 789 (826)
Q Consensus 789 e 789 (826)
-
T Consensus 124 ~ 124 (177)
T PF13870_consen 124 L 124 (177)
T ss_pred H
Confidence 3
No 260
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=61.74 E-value=1.2e+02 Score=31.43 Aligned_cols=24 Identities=13% Similarity=0.039 Sum_probs=15.7
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHh
Q 003366 720 GANLGQLKQENHELKKRLEKKEGE 743 (826)
Q Consensus 720 ~~~~~~~~~e~~~~~~~~~~~~~~ 743 (826)
+..|..+++|+..+=.++..+-++
T Consensus 83 GlLL~rvrde~~~~l~~y~~l~~s 106 (189)
T PF10211_consen 83 GLLLLRVRDEYRMTLDAYQTLYES 106 (189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445777778877766666555554
No 261
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=61.70 E-value=1.3e+02 Score=30.49 Aligned_cols=47 Identities=28% Similarity=0.275 Sum_probs=31.9
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 733 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIF 779 (826)
Q Consensus 733 ~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f 779 (826)
|.+|=.+.+.+|..=-+.++..+..+++++++|+++.+|-..+++--
T Consensus 48 l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a 94 (174)
T PRK07352 48 LEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADA 94 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555544446677777788888888888888887776543
No 262
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=61.66 E-value=86 Score=36.34 Aligned_cols=88 Identities=24% Similarity=0.343 Sum_probs=55.6
Q ss_pred cchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 003366 719 LGANLGQLKQENHELKKRLEKKEGELQEERERCRSL--EAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKK 796 (826)
Q Consensus 719 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l--~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~k 796 (826)
|.+-|.+.-.||++|+.-=...|..|+...+-|..- |+|-.+++-|-|-.++-|-+| ||..+-..|.++|.+-
T Consensus 290 Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaL-----EEKaaLrkerd~L~ke 364 (442)
T PF06637_consen 290 LRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLAL-----EEKAALRKERDSLAKE 364 (442)
T ss_pred HhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 455588888999999887777777776555433332 444455555666666666665 5555555666666666
Q ss_pred HHHHHHHHHHHHHHH
Q 003366 797 IKDASDTIQDLLDKI 811 (826)
Q Consensus 797 l~~a~~~i~~~~~~~ 811 (826)
|++--.+.+.|..++
T Consensus 365 Leekkreleql~~q~ 379 (442)
T PF06637_consen 365 LEEKKRELEQLKMQL 379 (442)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666555555555444
No 263
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=61.65 E-value=21 Score=35.40 Aligned_cols=78 Identities=24% Similarity=0.370 Sum_probs=52.7
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 003366 722 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDAS 801 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~ 801 (826)
++.+| +..++||.+..++..... -....|..++++.|- +.+.-|.++.-+..|=+.+|-|...||.||.++.
T Consensus 50 vVsEL-~~Ls~LK~~y~~~~~~~~---~~~~~l~a~~~e~qs----li~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~ 121 (131)
T PF04859_consen 50 VVSEL-RRLSELKRRYRKKQSDPS---PQVARLAAEIQEQQS----LIKTYEIVVKKLEAELRAKDSEIDRLREKLDELN 121 (131)
T ss_pred HHHHH-HHHHHHHHHHHcCCCCCC---ccccccccchHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566 456778888777765543 222345555555443 4445567777788888999999999999999887
Q ss_pred HHHHHH
Q 003366 802 DTIQDL 807 (826)
Q Consensus 802 ~~i~~~ 807 (826)
..=..|
T Consensus 122 ~~n~~L 127 (131)
T PF04859_consen 122 RANKSL 127 (131)
T ss_pred HHHHHh
Confidence 654333
No 264
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=61.29 E-value=1.2e+02 Score=36.16 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=14.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Q 003366 777 DIFAEERDRREREEENLRKKIKD 799 (826)
Q Consensus 777 ~~f~eer~rr~~e~~~lr~kl~~ 799 (826)
+...+||+.|-..-+.|+.+|+.
T Consensus 367 ~~v~~Er~~~~~~l~~~~~~~~~ 389 (582)
T PF09731_consen 367 EKVEQERNGRLAKLAELNSRLKA 389 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777666666666666553
No 265
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=61.11 E-value=64 Score=31.98 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003366 766 EELNKEQESLIDIFAEE 782 (826)
Q Consensus 766 ~~~~keq~~li~~f~ee 782 (826)
.++.+||+-|.-+|+..
T Consensus 80 ~~~q~EldDLL~ll~Dl 96 (136)
T PF04871_consen 80 KEAQSELDDLLVLLGDL 96 (136)
T ss_pred HhhhhhHHHHHHHHHhH
Confidence 35677777777777753
No 266
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=61.02 E-value=90 Score=33.68 Aligned_cols=87 Identities=31% Similarity=0.466 Sum_probs=49.7
Q ss_pred hhhhhHHHHHHHHhHHhH---HHHH----HhhhcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhHHHHHHHHHH
Q 003366 727 KQENHELKKRLEKKEGEL---QEER----ERCRSLEAQLKVMQQTIEELNKE---QESLIDIFAEERDRREREEENLRKK 796 (826)
Q Consensus 727 ~~e~~~~~~~~~~~~~~~---~~e~----~~~~~l~~~~~~~~~~~~~~~ke---q~~li~~f~eer~rr~~e~~~lr~k 796 (826)
..+..+|.+||..+++++ +.+| ++-..|+++++.++..-+.|.++ -+..+.-+..+...-..|.+.|..+
T Consensus 4 Er~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e 83 (246)
T PF00769_consen 4 EREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQE 83 (246)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888885 3333 66677777777666644444444 3344445555555666677788888
Q ss_pred HHHHHHHHHHHHHHHhh
Q 003366 797 IKDASDTIQDLLDKIKL 813 (826)
Q Consensus 797 l~~a~~~i~~~~~~~~~ 813 (826)
+.++...|..|-+....
T Consensus 84 ~~e~~~~i~~l~ee~~~ 100 (246)
T PF00769_consen 84 LREAEAEIARLEEESER 100 (246)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888777765543
No 267
>PRK01156 chromosome segregation protein; Provisional
Probab=61.00 E-value=66 Score=40.12 Aligned_cols=18 Identities=39% Similarity=0.595 Sum_probs=9.3
Q ss_pred EEEEEccccccCCcccccCC
Q 003366 331 RIIIYNLWEDDQGLLELDFD 350 (826)
Q Consensus 331 rIII~NL~~~~~G~lELDFd 350 (826)
.|.+-|++... ...++|+
T Consensus 5 ~l~l~NF~s~~--~~~i~f~ 22 (895)
T PRK01156 5 RIRLKNFLSHD--DSEIEFD 22 (895)
T ss_pred EEEEeCccCCC--CceEecC
Confidence 45566655533 2456664
No 268
>PRK14143 heat shock protein GrpE; Provisional
Probab=60.98 E-value=53 Score=35.55 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=9.7
Q ss_pred hhhhhhhhhHHHHHHHHhHHh
Q 003366 723 LGQLKQENHELKKRLEKKEGE 743 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~ 743 (826)
|..|++|..+|+.++++..++
T Consensus 76 l~~l~~e~~elkd~~lR~~Ad 96 (238)
T PRK14143 76 LESLKQELEELNSQYMRIAAD 96 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443
No 269
>PF14282 FlxA: FlxA-like protein
Probab=60.98 E-value=24 Score=33.36 Aligned_cols=51 Identities=24% Similarity=0.484 Sum_probs=40.7
Q ss_pred hhhhhhhhhhHHHHHHHHhHHh--H--HHHHHhhhcHHHHHHHHHHHHHHHHHHH
Q 003366 722 NLGQLKQENHELKKRLEKKEGE--L--QEERERCRSLEAQLKVMQQTIEELNKEQ 772 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~~~--~--~~e~~~~~~l~~~~~~~~~~~~~~~keq 772 (826)
.|++|++....|.+.|..+..+ + .....+.+.|..|++.++.+|-.+..++
T Consensus 20 ~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 20 QIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999988873 2 3334888889999999999888776554
No 270
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=60.83 E-value=85 Score=37.12 Aligned_cols=92 Identities=23% Similarity=0.324 Sum_probs=53.6
Q ss_pred hhhhhhhhhHHHHHHHHhHHhH---HHHH--------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----
Q 003366 723 LGQLKQENHELKKRLEKKEGEL---QEER--------ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRE---- 787 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~---~~e~--------~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~---- 787 (826)
+.+|++|...++|-+..++..+ .-|. ..+.++++++++++.++...... |+=+..+..|...-+
T Consensus 276 l~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~e~~l~~~el~~~~ee~~ 354 (511)
T PF09787_consen 276 LEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTT-EAELRLYYQELYHYREELS 354 (511)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhch-HHHHHHHHHHHHHHHHHHH
Confidence 4455566666665555555554 1111 55777778888888877666443 333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003366 788 REEENLRKKIKDASDTIQDLLDKIKLLE 815 (826)
Q Consensus 788 ~e~~~lr~kl~~a~~~i~~~~~~~~~~~ 815 (826)
.....+--|+++-.+.||-|..+|.+.-
T Consensus 355 ~~~s~~~~k~~~ke~E~q~lr~~l~~~~ 382 (511)
T PF09787_consen 355 RQKSPLQLKLKEKESEIQKLRNQLSARA 382 (511)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334455677777888888888887644
No 271
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=60.83 E-value=1e+02 Score=28.61 Aligned_cols=17 Identities=29% Similarity=0.634 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003366 793 LRKKIKDASDTIQDLLD 809 (826)
Q Consensus 793 lr~kl~~a~~~i~~~~~ 809 (826)
+-.+|+.|..+|+.+|+
T Consensus 72 vs~rL~~a~e~Ir~vL~ 88 (89)
T PF13747_consen 72 VSRRLDSAIETIRAVLD 88 (89)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 45667777777777765
No 272
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=60.81 E-value=66 Score=40.13 Aligned_cols=86 Identities=30% Similarity=0.429 Sum_probs=54.2
Q ss_pred cchhhhhhhhhhhHHHHHHHHhHHhHHHHH-------Hhhh-cHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 003366 719 LGANLGQLKQENHELKKRLEKKEGELQEER-------ERCR-SLEA---QLKVMQQTIEELNKEQESLIDIFAEERDRRE 787 (826)
Q Consensus 719 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~-------~~~~-~l~~---~~~~~~~~~~~~~keq~~li~~f~eer~rr~ 787 (826)
|..+|..+|+||..|.+-++.++.+|.+-. .|.| .+++ .++..|-+||++.||.-.|--.+ ..||
T Consensus 460 llk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itl----rQrD 535 (861)
T PF15254_consen 460 LLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITL----RQRD 535 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHH----HHHH
Confidence 344677778888888888777777763322 2222 1222 23445568999999987664443 5788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 003366 788 REEENLRKKIKDASDTIQDLLDKIK 812 (826)
Q Consensus 788 ~e~~~lr~kl~~a~~~i~~~~~~~~ 812 (826)
.|.+.|| |--.|+|.=+.+|-
T Consensus 536 aEi~RL~----eLtR~LQ~Sma~lL 556 (861)
T PF15254_consen 536 AEIERLR----ELTRTLQNSMAKLL 556 (861)
T ss_pred HHHHHHH----HHHHHHHHHHHHHh
Confidence 8987665 45556666555543
No 273
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=60.71 E-value=1.3e+02 Score=27.30 Aligned_cols=26 Identities=12% Similarity=0.411 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHH
Q 003366 764 TIEELNKEQESLIDIFAEERDRRERE 789 (826)
Q Consensus 764 ~~~~~~keq~~li~~f~eer~rr~~e 789 (826)
-|.+++++++.....+.+...+-..+
T Consensus 62 ll~~l~~~~~~~~~~l~~q~~~l~~~ 87 (127)
T smart00502 62 LLEDLEEQKENKLKVLEQQLESLTQK 87 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555554444443333
No 274
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=60.65 E-value=89 Score=33.85 Aligned_cols=68 Identities=13% Similarity=0.179 Sum_probs=38.9
Q ss_pred CcccccccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 712 HFLSDCSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIF 779 (826)
Q Consensus 712 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f 779 (826)
-.|++..+..-+++++.+...++..+..++..+..-....+.++.+++.++.+++.++++-+..-..|
T Consensus 71 ~~ld~~~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~ 138 (334)
T TIGR00998 71 VRLDPTNAELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRVPLF 138 (334)
T ss_pred EEECchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34566655666667766666666666666555433223344555666666666666665555544443
No 275
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=60.63 E-value=27 Score=41.24 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 003366 790 EENLRKKIKDASDTIQDLLDKIKLL 814 (826)
Q Consensus 790 ~~~lr~kl~~a~~~i~~~~~~~~~~ 814 (826)
.+.+..||++-..+|+.|.+|++++
T Consensus 99 ~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 99 RGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455677778888888888888653
No 276
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=60.51 E-value=55 Score=40.53 Aligned_cols=17 Identities=24% Similarity=0.495 Sum_probs=12.5
Q ss_pred chhhhhhhcccCCCCCC
Q 003366 106 LQSCKQFWKAGDYEGAP 122 (826)
Q Consensus 106 ~~~~~~fwkag~y~~~~ 122 (826)
.-+.|.+++.|.|+++.
T Consensus 110 ~~LP~r~g~~~~~~~g~ 126 (717)
T PF10168_consen 110 LELPRRWGKNGEFEDGK 126 (717)
T ss_pred EEeccccCccccccCCC
Confidence 34567788899998765
No 277
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=60.51 E-value=15 Score=44.74 Aligned_cols=61 Identities=21% Similarity=0.324 Sum_probs=43.6
Q ss_pred hhhhhhhhhhhHHHHHHHHhHHhHHHHH-----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 721 ANLGQLKQENHELKKRLEKKEGELQEER-----ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE 781 (826)
Q Consensus 721 ~~~~~~~~e~~~~~~~~~~~~~~~~~e~-----~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~e 781 (826)
..|..|+.||..|++||..+|+.-.... .-......++.+++.+|+.++|.-.-|.+||+.
T Consensus 566 ~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ 631 (722)
T PF05557_consen 566 STLEALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFKA 631 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999988876533222 223345557889999999999999999999953
No 278
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=60.33 E-value=59 Score=41.57 Aligned_cols=89 Identities=24% Similarity=0.298 Sum_probs=39.8
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHh----------HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 003366 720 GANLGQLKQENHELKKRLEKKEGE----------LQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRERE 789 (826)
Q Consensus 720 ~~~~~~~~~e~~~~~~~~~~~~~~----------~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e 789 (826)
...|+.+++.+.+-+.++++.+-+ |++|+...+..-++++..+..|+.-.-++++=|+--..+++.-.+|
T Consensus 793 ~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~e 872 (1174)
T KOG0933|consen 793 EKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAE 872 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Confidence 334555555555555455544443 2233332222222223323333333333333344444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003366 790 EENLRKKIKDASDTIQDLL 808 (826)
Q Consensus 790 ~~~lr~kl~~a~~~i~~~~ 808 (826)
.+.+.+|+.+-...|..++
T Consensus 873 l~~~k~k~~~~dt~i~~~~ 891 (1174)
T KOG0933|consen 873 LKDQKAKQRDIDTEISGLL 891 (1174)
T ss_pred HHHHHHHHHhhhHHHhhhh
Confidence 5666666665555554443
No 279
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=60.27 E-value=1.6e+02 Score=31.35 Aligned_cols=44 Identities=14% Similarity=0.281 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003366 769 NKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIK 812 (826)
Q Consensus 769 ~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~ 812 (826)
|+..+.+++--.+|+++-.++.+++.+-..+-.-.+.++++.|.
T Consensus 72 ~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~ 115 (251)
T PF11932_consen 72 NEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELE 115 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444333333333334444443
No 280
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=59.58 E-value=1.3e+02 Score=33.26 Aligned_cols=25 Identities=8% Similarity=0.275 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 003366 789 EEENLRKKIKDASDTIQDLLDKIKL 813 (826)
Q Consensus 789 e~~~lr~kl~~a~~~i~~~~~~~~~ 813 (826)
+-..++..|.++-..+..+..+++.
T Consensus 247 ~l~~~~~~l~~~~~~l~~~~~~l~~ 271 (423)
T TIGR01843 247 ELTEAQARLAELRERLNKARDRLQR 271 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666666666666666555543
No 281
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=59.46 E-value=2.1e+02 Score=29.87 Aligned_cols=14 Identities=43% Similarity=0.788 Sum_probs=5.5
Q ss_pred hHHHHHHHHhHHhH
Q 003366 731 HELKKRLEKKEGEL 744 (826)
Q Consensus 731 ~~~~~~~~~~~~~~ 744 (826)
..+..||..+|+.|
T Consensus 81 ~~~E~rl~~rE~~L 94 (201)
T PF12072_consen 81 QRLEKRLQQREEQL 94 (201)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444444433
No 282
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=59.25 E-value=93 Score=37.98 Aligned_cols=81 Identities=30% Similarity=0.482 Sum_probs=39.7
Q ss_pred hhhhhHHHHHHHHhHHhHHHHHH---hhhcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 003366 727 KQENHELKKRLEKKEGELQEERE---RCRSLEAQLKVMQQTIEELNKE-----QESLIDIFAEERDRREREEENLRKKIK 798 (826)
Q Consensus 727 ~~e~~~~~~~~~~~~~~~~~e~~---~~~~l~~~~~~~~~~~~~~~ke-----q~~li~~f~eer~rr~~e~~~lr~kl~ 798 (826)
-.||.+|+++|.++++++..... ..+-|++++-+..+++++..+. |+-+=.=++|--.-=-.|+.|+..+++
T Consensus 120 ~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~ 199 (629)
T KOG0963|consen 120 SEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLE 199 (629)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999988765541 2222333332222222222110 000000111100111235667778888
Q ss_pred HHHHHHHHH
Q 003366 799 DASDTIQDL 807 (826)
Q Consensus 799 ~a~~~i~~~ 807 (826)
.+-.+|+.|
T Consensus 200 ~le~ki~~l 208 (629)
T KOG0963|consen 200 ELEKKISSL 208 (629)
T ss_pred HHHHHHHHH
Confidence 887777766
No 283
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=59.13 E-value=1.1e+02 Score=39.20 Aligned_cols=57 Identities=35% Similarity=0.470 Sum_probs=40.7
Q ss_pred HHHHHHhhhcHHHHHH----HHHHHHHH-----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 003366 744 LQEERERCRSLEAQLK----VMQQTIEE-----LNKEQESLIDIFAEERDRREREEENLRKKIKDA 800 (826)
Q Consensus 744 ~~~e~~~~~~l~~~~~----~~~~~~~~-----~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a 800 (826)
+.+|-.-|+-|.+|.+ .||++-|+ ..++-+++|+-..||..|+.+||+..|.||+.-
T Consensus 808 ~~~~a~~c~~ll~~a~~~~~~Aq~e~e~er~~kq~~~~~a~~~~~~ee~~r~~eee~~~r~~l~~q 873 (1018)
T KOG2002|consen 808 IAQEAQLCKDLLKQALEHVAQAQEEDEEERRAKQEKEEEALIEKELEEARRKEEEEKARREKLEKQ 873 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555577877776653 34443332 235567899999999999999999999999843
No 284
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=59.12 E-value=2e+02 Score=30.00 Aligned_cols=15 Identities=33% Similarity=0.691 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 003366 761 MQQTIEELNKEQESL 775 (826)
Q Consensus 761 ~~~~~~~~~keq~~l 775 (826)
+.++.+.+++....|
T Consensus 94 L~~~~~~L~~~e~~l 108 (201)
T PF12072_consen 94 LDRRLEQLEKREEEL 108 (201)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444333
No 285
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=58.62 E-value=53 Score=31.96 Aligned_cols=63 Identities=24% Similarity=0.421 Sum_probs=40.5
Q ss_pred hhcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--HHHHHHHHHHhhhh
Q 003366 751 CRSLEAQLKVMQQTI-EELNKEQESLIDIFAEERDRREREEENLRKKIKDAS--DTIQDLLDKIKLLE 815 (826)
Q Consensus 751 ~~~l~~~~~~~~~~~-~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~--~~i~~~~~~~~~~~ 815 (826)
.+.|+.++++++++- +..+-.-+--|-.| ||..-..--..|+++|++++ ..+.+|..+|..++
T Consensus 30 L~~L~~~l~~~~~~~~~kk~~~kYh~VRFf--ERkKa~R~lkql~k~l~~~~~~~~~~~l~~~l~~~~ 95 (114)
T PF10153_consen 30 LEALKRELEEAERKEKEKKMAKKYHMVRFF--ERKKATRKLKQLEKKLEEAEDKKEIKELEKELHKLE 95 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 355666666655532 23334445566667 77777777888999998875 55677777776554
No 286
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=58.41 E-value=1.7e+02 Score=27.77 Aligned_cols=48 Identities=19% Similarity=0.157 Sum_probs=25.4
Q ss_pred cchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHH
Q 003366 719 LGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIE 766 (826)
Q Consensus 719 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~ 766 (826)
|.++++.-+.+-...+..|......++...++...|.....+..+.++
T Consensus 4 L~~vl~lr~~~ed~a~~~la~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 51 (141)
T TIGR02473 4 LQKLLDLREKEEEQAKLELAKAQAEFERLETQLQQLIKYREEYEQQAL 51 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555444455555555555555555555555555555555554443
No 287
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=58.28 E-value=78 Score=32.58 Aligned_cols=68 Identities=18% Similarity=0.343 Sum_probs=47.9
Q ss_pred hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHH
Q 003366 731 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEE-NLRKKIK 798 (826)
Q Consensus 731 ~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~-~lr~kl~ 798 (826)
...+..+.|+...-...-+|...++.++.+++++.+.+.++=+.+-+.+-.|..|.+.|.. .++.-|.
T Consensus 145 ~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~ 213 (236)
T PF09325_consen 145 QKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLE 213 (236)
T ss_pred HHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334333333233347788889999999999999999999999999999999988753 3444444
No 288
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=58.24 E-value=87 Score=39.29 Aligned_cols=48 Identities=31% Similarity=0.521 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----HHHHHHHHHHHHHHHHH
Q 003366 760 VMQQTIEELNKEQESLIDIFAEERDRREREE----ENLRKKIKDASDTIQDL 807 (826)
Q Consensus 760 ~~~~~~~~~~keq~~li~~f~eer~rr~~e~----~~lr~kl~~a~~~i~~~ 807 (826)
.+.-+||+++.|-+-+|.-+-+.|+|-++|. +.+++.+++.-.+|+.|
T Consensus 433 ~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~L 484 (775)
T PF10174_consen 433 EALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESL 484 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6668999999999999999999988877544 44555555555555443
No 289
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=58.23 E-value=86 Score=36.25 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=21.7
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHH
Q 003366 722 NLGQLKQENHELKKRLEKKEGELQEER 748 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~~~~~~e~ 748 (826)
.++-|.++..+++++|...|+.|+.-+
T Consensus 162 ~~~fl~~ql~~~~~~L~~ae~~l~~f~ 188 (498)
T TIGR03007 162 AQRFIDEQIKTYEKKLEAAENRLKAFK 188 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477778888899999999888886555
No 290
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=57.99 E-value=92 Score=37.01 Aligned_cols=62 Identities=21% Similarity=0.264 Sum_probs=27.7
Q ss_pred HHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 003366 735 KRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKK 796 (826)
Q Consensus 735 ~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~k 796 (826)
+++...+++++..+..+..++.++.+++.++|+..+..+.-+..|.+-|.+-..|=+||.++
T Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ 121 (475)
T PRK10361 60 AECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANR 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444333333444444444444444555444
No 291
>PF14182 YgaB: YgaB-like protein
Probab=57.94 E-value=50 Score=30.42 Aligned_cols=32 Identities=28% Similarity=0.572 Sum_probs=24.3
Q ss_pred HHHHHHHhHHh--HHHHHHhhhcHHHHHHHHHHH
Q 003366 733 LKKRLEKKEGE--LQEERERCRSLEAQLKVMQQT 764 (826)
Q Consensus 733 ~~~~~~~~~~~--~~~e~~~~~~l~~~~~~~~~~ 764 (826)
..|-|+-|++- ||.|+|+|...|.+|.+++++
T Consensus 6 V~eQm~tMD~LL~LQsElERCqeIE~eL~~l~~e 39 (79)
T PF14182_consen 6 VSEQMKTMDKLLFLQSELERCQEIEKELKELERE 39 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666665 599999999999998777654
No 292
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=57.82 E-value=1.4e+02 Score=31.26 Aligned_cols=52 Identities=25% Similarity=0.210 Sum_probs=31.4
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003366 733 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD 784 (826)
Q Consensus 733 ~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~ 784 (826)
|.+|=...+++|..=-+.+...+..+++++++|+++..|...+++---+|..
T Consensus 77 L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe 128 (205)
T PRK06231 77 LNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEAL 128 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443333555556667778888888888887777765544443
No 293
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=57.59 E-value=89 Score=33.66 Aligned_cols=44 Identities=27% Similarity=0.401 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhh
Q 003366 773 ESLIDIFAEERDRREREEENLRKKIKDASDTI-------QDLLDKIKLLEK 816 (826)
Q Consensus 773 ~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i-------~~~~~~~~~~~~ 816 (826)
|-+++.+--+=..||.+-..|.+-||+|--.+ .+-|..|+.+++
T Consensus 73 e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLtta~fqA~qKLksi~~A~k 123 (272)
T KOG4552|consen 73 EQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILTTACFQANQKLKSIKEAEK 123 (272)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55777787788888888888888888875433 233455555554
No 294
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=57.42 E-value=1.4e+02 Score=32.27 Aligned_cols=11 Identities=27% Similarity=0.567 Sum_probs=5.1
Q ss_pred HHHHhhhHHHH
Q 003366 780 AEERDRREREE 790 (826)
Q Consensus 780 ~eer~rr~~e~ 790 (826)
-+||+++...-
T Consensus 73 ~~er~~~~~~i 83 (230)
T PF10146_consen 73 ESERNKRQEKI 83 (230)
T ss_pred HHHHHHHHHHH
Confidence 44555544433
No 295
>PRK04863 mukB cell division protein MukB; Provisional
Probab=57.40 E-value=1.1e+02 Score=41.18 Aligned_cols=27 Identities=19% Similarity=0.463 Sum_probs=18.0
Q ss_pred Cccccccc---hHHHHHHHHHHHHHHHHHh
Q 003366 503 HDKQGFER---TTVLARLEARLIQMQKDYW 529 (826)
Q Consensus 503 HNKQdFe~---t~l~~rLe~~L~qm~~~YW 529 (826)
.++..|.+ +.+|.++...+.+.+.+|-
T Consensus 192 ~dR~kF~kLf~taiy~~i~~~i~~fl~~yl 221 (1486)
T PRK04863 192 SDRSKFYRLIEASLYGGISSAITRSLRDYL 221 (1486)
T ss_pred chHHHHHHHHHHHHHhhHHHhHHHHHHHHc
Confidence 55555653 5567777777777777776
No 296
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=57.28 E-value=1.1e+02 Score=42.16 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=16.5
Q ss_pred CCCcceeeeeecC-ccccCCcccccc
Q 003366 485 SDGRGVIGVLEAN-FVEPAHDKQGFE 509 (826)
Q Consensus 485 s~GrGVIGVlEan-flePtHNKQdFe 509 (826)
..+-+.|||||.. |--+-+|+ ||
T Consensus 444 ~~~~~fIgvLDiaGFEIfe~nS--FE 467 (1930)
T KOG0161|consen 444 QQRDYFIGVLDIAGFEIFEFNS--FE 467 (1930)
T ss_pred cccCCcceeeeeccccccCcCC--HH
Confidence 5778999999996 54455554 55
No 297
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=57.20 E-value=31 Score=30.82 Aligned_cols=19 Identities=42% Similarity=0.628 Sum_probs=13.6
Q ss_pred hhhhhhhhhhHHHHHHHHh
Q 003366 722 NLGQLKQENHELKKRLEKK 740 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~ 740 (826)
.+..|-+||..|||-|..-
T Consensus 7 ~l~~LL~EN~~LKealrQ~ 25 (68)
T PF11577_consen 7 QLQELLQENQDLKEALRQN 25 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHH
Confidence 3667778888888776544
No 298
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=57.19 E-value=1.6e+02 Score=30.99 Aligned_cols=87 Identities=16% Similarity=0.255 Sum_probs=44.2
Q ss_pred hhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 003366 729 ENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEEL--------NKEQESLIDIFAEERDRREREEENLRKKIKDA 800 (826)
Q Consensus 729 e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~--------~keq~~li~~f~eer~rr~~e~~~lr~kl~~a 800 (826)
=..++.+-|.+....+-+-.-..+.|+.++.+++..++.. .+-.|.|-.-.-+++....+.-+.|..-+...
T Consensus 32 ~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~ 111 (219)
T TIGR02977 32 IIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAV 111 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555554444444444555554444444332 23344555555555555555555555555555
Q ss_pred HHHHHHHHHHHhhhh
Q 003366 801 SDTIQDLLDKIKLLE 815 (826)
Q Consensus 801 ~~~i~~~~~~~~~~~ 815 (826)
..+|+.|..+|..++
T Consensus 112 ~~~v~~l~~~l~~L~ 126 (219)
T TIGR02977 112 EETLAKLQEDIAKLQ 126 (219)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555443
No 299
>PRK14153 heat shock protein GrpE; Provisional
Probab=57.12 E-value=76 Score=33.46 Aligned_cols=12 Identities=33% Similarity=0.506 Sum_probs=4.3
Q ss_pred hhhhhhHHHHHH
Q 003366 726 LKQENHELKKRL 737 (826)
Q Consensus 726 ~~~e~~~~~~~~ 737 (826)
|+++..+|++++
T Consensus 45 l~~e~~elkd~~ 56 (194)
T PRK14153 45 CREEIESLKEQL 56 (194)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 300
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=57.07 E-value=69 Score=36.31 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=19.5
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHH
Q 003366 722 NLGQLKQENHELKKRLEKKEGELQEER 748 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~~~~~~e~ 748 (826)
.++-|.++..+++++|...|..|+.=+
T Consensus 172 ~~~fl~~ql~~~~~~l~~ae~~l~~fr 198 (444)
T TIGR03017 172 AALWFVQQIAALREDLARAQSKLSAYQ 198 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777888888888887775544
No 301
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=57.03 E-value=1.4e+02 Score=35.85 Aligned_cols=103 Identities=33% Similarity=0.472 Sum_probs=71.1
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhH---HHHHHhhhcHHHHHHHHHHHHHHHHH-----------------HHHHHHHHH
Q 003366 720 GANLGQLKQENHELKKRLEKKEGEL---QEERERCRSLEAQLKVMQQTIEELNK-----------------EQESLIDIF 779 (826)
Q Consensus 720 ~~~~~~~~~e~~~~~~~~~~~~~~~---~~e~~~~~~l~~~~~~~~~~~~~~~k-----------------eq~~li~~f 779 (826)
...|.++++.|..|...+.++..+- ..|.+.-+.|+.|+..++.+++.+.. +...-++.+
T Consensus 312 ~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~i 391 (560)
T PF06160_consen 312 YEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEI 391 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHH
Confidence 4458999999999999999998883 35666666666666665555443332 222223445
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhcCCCCc
Q 003366 780 AEERDRREREEENLRKKIKDASDTIQDLLDKIK----LLEKMKTPSI 822 (826)
Q Consensus 780 ~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~----~~~~~~~~~~ 822 (826)
.++-..-...-.+||+--++|-.+++.+-.+|+ .+++...|..
T Consensus 392 e~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGl 438 (560)
T PF06160_consen 392 EEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGL 438 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 566666677788899999999999987776664 4566666654
No 302
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=56.94 E-value=1.1e+02 Score=38.06 Aligned_cols=62 Identities=23% Similarity=0.412 Sum_probs=41.9
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 003366 733 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIE-------ELNKEQESLIDIFAEERDRREREEENLR 794 (826)
Q Consensus 733 ~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~-------~~~keq~~li~~f~eer~rr~~e~~~lr 794 (826)
+|+|...+|.++.+=+..+|..|+|+.++++++. |-.+|.|.|...++--+|.-..=|.+|.
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLs 611 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLS 611 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6777777777765544555555555555555443 3456788888888888888777777773
No 303
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=56.64 E-value=1.1e+02 Score=35.52 Aligned_cols=62 Identities=18% Similarity=0.189 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003366 754 LEAQLKVMQQTIEELNKEQESLIDIFAEERDR------REREEENLRKKIKDASDTIQDLLDKIKLLE 815 (826)
Q Consensus 754 l~~~~~~~~~~~~~~~keq~~li~~f~eer~r------r~~e~~~lr~kl~~a~~~i~~~~~~~~~~~ 815 (826)
|..++.+++.+++.+..+..+|.+.+.+-+.+ ...|-..|...++.+....+.|++++...+
T Consensus 315 l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~ 382 (498)
T TIGR03007 315 LQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAE 382 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555554444444444443333 244566677777777777777777766543
No 304
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=56.52 E-value=64 Score=37.83 Aligned_cols=90 Identities=21% Similarity=0.378 Sum_probs=47.3
Q ss_pred hhhhhhhhhhHHHHHHHHhHHh--HHHH---H-HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHH
Q 003366 722 NLGQLKQENHELKKRLEKKEGE--LQEE---R-ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE---ERDRREREEEN 792 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~~~--~~~e---~-~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~e---er~rr~~e~~~ 792 (826)
.++.+++.-..++++|.++-.+ +-.+ + ++.++|..+++++|++.+++.|+-- .+... +...--.|.+.
T Consensus 3 d~k~ir~n~d~v~~~l~~r~~~~~~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig---~~~~~~~~~~~~l~~e~~~ 79 (429)
T COG0172 3 DLKLIRENPDAVREKLKKRGGDALDVDKLLELDEERRKLLRELEELQAERNELSKEIG---RALKRGEDDAEELIAEVKE 79 (429)
T ss_pred hHHHhhhCHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhccchhHHHHHHHHHH
Confidence 3677888556677787666311 1111 1 4455555555555554444444322 11111 11223345577
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 003366 793 LRKKIKDASDTIQDLLDKIKLL 814 (826)
Q Consensus 793 lr~kl~~a~~~i~~~~~~~~~~ 814 (826)
|.++|+++-....++-++++.+
T Consensus 80 l~~~l~~~e~~~~~~~~~l~~~ 101 (429)
T COG0172 80 LKEKLKELEAALDELEAELDTL 101 (429)
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 7777777766666666666544
No 305
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=56.50 E-value=1.7e+02 Score=29.86 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=33.0
Q ss_pred hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 731 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIF 779 (826)
Q Consensus 731 ~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f 779 (826)
.-|.+|=.+...++..=-+.....+..+++++++|+++.+|-..+|+--
T Consensus 54 ~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A 102 (184)
T PRK13455 54 GMLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAAA 102 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455665555555544446666677777888888888888877777653
No 306
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=56.42 E-value=2.9e+02 Score=31.41 Aligned_cols=52 Identities=35% Similarity=0.622 Sum_probs=29.2
Q ss_pred cchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHH----------------------HHHHHHHHHHHHHHHHH
Q 003366 719 LGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLK----------------------VMQQTIEELNKEQESLI 776 (826)
Q Consensus 719 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~----------------------~~~~~~~~~~keq~~li 776 (826)
|..-+..|++||..||. ++..++.+|+.|.+.+. .+-++|..++||.+.|+
T Consensus 25 l~~~~~sL~qen~~Lk~-------El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~ 97 (310)
T PF09755_consen 25 LRKRIESLQQENRVLKR-------ELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLA 97 (310)
T ss_pred HHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33346666666666654 34444455555544432 23356777888877776
Q ss_pred H
Q 003366 777 D 777 (826)
Q Consensus 777 ~ 777 (826)
-
T Consensus 98 ~ 98 (310)
T PF09755_consen 98 L 98 (310)
T ss_pred H
Confidence 3
No 307
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=56.33 E-value=93 Score=31.69 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=14.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHH
Q 003366 779 FAEERDRREREEENLRKKIKD 799 (826)
Q Consensus 779 f~eer~rr~~e~~~lr~kl~~ 799 (826)
+.|=+.+-+.|..+||..++.
T Consensus 129 i~e~~~ki~~ei~~lr~~iE~ 149 (177)
T PF07798_consen 129 IQELNNKIDTEIANLRTEIES 149 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777778877774
No 308
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=56.30 E-value=1.7e+02 Score=31.20 Aligned_cols=45 Identities=27% Similarity=0.436 Sum_probs=25.2
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 733 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID 777 (826)
Q Consensus 733 ~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~ 777 (826)
|.+|=++.+++|+.=-+..+..+..+++++++|+++.+|...+++
T Consensus 34 l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~ 78 (246)
T TIGR03321 34 MDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLT 78 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433344555566666666677766666665554
No 309
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=56.11 E-value=1.2e+02 Score=33.85 Aligned_cols=69 Identities=29% Similarity=0.402 Sum_probs=37.7
Q ss_pred hHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 003366 743 ELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRK----KIKDASDTIQDLLDKI 811 (826)
Q Consensus 743 ~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~----kl~~a~~~i~~~~~~~ 811 (826)
.+++|++...+=-.+...+..+||.+=.|.----...-||-.++..|++.-|+ |+..+.+.||..++.-
T Consensus 54 ~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~~ee~ 126 (309)
T PF09728_consen 54 QLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQMEEQ 126 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555544444444445555566655444333334445666666666666553 5556666666666543
No 310
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=56.05 E-value=49 Score=34.79 Aligned_cols=66 Identities=21% Similarity=0.359 Sum_probs=39.3
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-----HHHHHHHHHHHHHHHHHHHHH-HHhhhhh
Q 003366 744 LQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRER-----EEENLRKKIKDASDTIQDLLD-KIKLLEK 816 (826)
Q Consensus 744 ~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~-----e~~~lr~kl~~a~~~i~~~~~-~~~~~~~ 816 (826)
+|+-.+.|++|.++++++.|.+-+...+-+ -|...|+. +.--+|.+|-++-..+|++++ +++.+++
T Consensus 77 ~qk~~~~~~~l~~~~~~~kqdi~t~~e~i~-------~ek~~r~k~~Te~~~n~~~~~Ll~~~k~eqd~~k~~l~~l~~ 148 (209)
T COG5124 77 LQKLYDSSELLKKKIQEVKQDIATYKEEID-------KEKATRRKKFTEGQKNYNREALLEKRKKEQDEIKKKLNSLQK 148 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 345556777777777777777766554422 12211221 233466777777777777777 6766654
No 311
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=55.92 E-value=22 Score=33.06 Aligned_cols=53 Identities=30% Similarity=0.455 Sum_probs=40.8
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHH---HhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEER---ERCRSLEAQLKVMQQTIEELNKEQESL 775 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~---~~~~~l~~~~~~~~~~~~~~~keq~~l 775 (826)
|..|.+.....+.||..++-.|..+- +.+++||.++..+..+++...||-..|
T Consensus 7 Id~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~L 62 (85)
T PF15188_consen 7 IDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLL 62 (85)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 66777888888999999998885544 788888888887777777776665555
No 312
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=55.85 E-value=65 Score=34.58 Aligned_cols=58 Identities=19% Similarity=0.193 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003366 758 LKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLE 815 (826)
Q Consensus 758 ~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~ 815 (826)
++|++|+|--..=|-|+++..=.||..||+++...|.+=|+.|...=+|.-+|+..+-
T Consensus 3 ~EELRq~Ll~TTlELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 3 MEELRQKLLYTTLELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788877777888888888899999998888888888877777777666666443
No 313
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=55.57 E-value=2e+02 Score=28.60 Aligned_cols=45 Identities=7% Similarity=0.224 Sum_probs=23.7
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 733 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID 777 (826)
Q Consensus 733 ~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~ 777 (826)
|.+|=.+..++|..=-+.+...+..+++++++|+++.+|-..+++
T Consensus 34 l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~ 78 (159)
T PRK13461 34 IDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVE 78 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444333344444555566666677776666655554
No 314
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=55.47 E-value=1.1e+02 Score=32.47 Aligned_cols=57 Identities=16% Similarity=0.203 Sum_probs=27.9
Q ss_pred ccccccchhhhhhhhhhhHHHHHHHHhH-------HhHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 003366 714 LSDCSLGANLGQLKQENHELKKRLEKKE-------GELQEERERCRSLEAQLKVMQQTIEELNK 770 (826)
Q Consensus 714 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~-------~~~~~e~~~~~~l~~~~~~~~~~~~~~~k 770 (826)
|.-+++..||.+|-+-+-=-+|++.-.- +-++.-.-.|..|++||++..|++-++.+
T Consensus 39 Iv~~tvKdvLQsLvDD~lV~~eKIgtSnyywsfps~a~~~~ks~~qeLe~~L~~~~qk~~tl~e 102 (203)
T KOG3433|consen 39 IVWQTVKDVLQSLVDDGLVIKEKIGTSNYYWSFPSEAICDRKSVLQELESQLATGSQKKATLGE 102 (203)
T ss_pred eehhHHHHHHHHHhccchHHHHHhcccccccccchHHHHHHHHHHHHHHHHHHHhhhhHhHHHH
Confidence 4444444556666555555555554321 11233334555555555555555555444
No 315
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=55.38 E-value=1.9e+02 Score=29.35 Aligned_cols=50 Identities=18% Similarity=0.269 Sum_probs=30.7
Q ss_pred HHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 732 ELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE 781 (826)
Q Consensus 732 ~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~e 781 (826)
-|.+|=.+..++++.=-+.....++.+++++++|+++.+|-..+++---+
T Consensus 50 ~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~ 99 (167)
T PRK08475 50 FYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKK 99 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555554444555666666777778888887777776654433
No 316
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=55.21 E-value=49 Score=33.39 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=12.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 003366 784 DRREREEENLRKKIKDASDTIQ 805 (826)
Q Consensus 784 ~rr~~e~~~lr~kl~~a~~~i~ 805 (826)
.....+.++|+.|++.|...|+
T Consensus 155 ~~l~~~i~~l~rk~~~l~~~i~ 176 (177)
T PF13870_consen 155 EELRKEIKELERKVEILEMRIK 176 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3344555666666666665554
No 317
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=55.02 E-value=43 Score=37.57 Aligned_cols=53 Identities=15% Similarity=0.265 Sum_probs=24.4
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESL 775 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~l 775 (826)
|++|+++-.++++.+..+.+.-....+..+..+.++.+++.+++.++.+.+.+
T Consensus 1 l~el~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 53 (378)
T TIGR01554 1 LSELKEQREEIVAEIRSLLDKAEKLEKELTAAALEKEELETDVEKLKEEIKLL 53 (378)
T ss_pred ChhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555544444111112344444444555555555555444443
No 318
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=54.97 E-value=25 Score=34.74 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=7.5
Q ss_pred hhhhhhhhhHHHHHHHHh
Q 003366 723 LGQLKQENHELKKRLEKK 740 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~ 740 (826)
+..|+++...|.+.+..+
T Consensus 13 ~~~~~~~l~~l~~~~~~l 30 (165)
T PF01025_consen 13 IEELEEELEELEKEIEEL 30 (165)
T ss_dssp HCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 319
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=54.56 E-value=39 Score=30.88 Aligned_cols=42 Identities=38% Similarity=0.459 Sum_probs=25.9
Q ss_pred hhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 003366 726 LKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKE 771 (826)
Q Consensus 726 ~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~ke 771 (826)
|-++|.+|+..|..++++ +++.+.|..+|..-=.+.-++||-
T Consensus 3 Li~qNk~L~~kL~~K~eE----I~rLn~lv~sLR~KLiKYt~Lnkk 44 (76)
T PF11544_consen 3 LIKQNKELKKKLNDKQEE----IDRLNILVGSLRGKLIKYTELNKK 44 (76)
T ss_dssp ---HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999887764 455666666665555555555554
No 320
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=54.54 E-value=2.2e+02 Score=27.83 Aligned_cols=49 Identities=20% Similarity=0.177 Sum_probs=27.6
Q ss_pred cchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHH
Q 003366 719 LGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEE 767 (826)
Q Consensus 719 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~ 767 (826)
|++||..=.++-...+..|.+....++.+..+...|+....+.++++.+
T Consensus 7 L~~vL~l~~~~ee~a~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~ 55 (146)
T PRK07720 7 LQKVLELKENEKEKALGEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEE 55 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555544444444555555555555555556666666666666665544
No 321
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=54.53 E-value=51 Score=33.06 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=9.3
Q ss_pred hhhhhhhhhHHHHHHHHhHH
Q 003366 723 LGQLKQENHELKKRLEKKEG 742 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~ 742 (826)
+..|..|..+|++.|..++.
T Consensus 74 l~~ld~ei~~L~~el~~l~~ 93 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKK 93 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433
No 322
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=54.36 E-value=1.2e+02 Score=32.11 Aligned_cols=14 Identities=29% Similarity=0.499 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHH
Q 003366 793 LRKKIKDASDTIQD 806 (826)
Q Consensus 793 lr~kl~~a~~~i~~ 806 (826)
++++..||.|-+-|
T Consensus 156 ~~K~~~eaanrwtD 169 (203)
T KOG3433|consen 156 LEKTMAEAANRWTD 169 (203)
T ss_pred HHHHHHHHHhhhhh
Confidence 55666666665543
No 323
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=54.34 E-value=1.9e+02 Score=27.22 Aligned_cols=36 Identities=19% Similarity=0.443 Sum_probs=25.6
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 003366 781 EERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 816 (826)
Q Consensus 781 eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~~ 816 (826)
..+.....|-+.|+..|...-..|+.+-++|.....
T Consensus 74 k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~ 109 (126)
T PF13863_consen 74 KKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYKK 109 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777888888888888888777775543
No 324
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.76 E-value=2e+02 Score=31.91 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=17.8
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhH
Q 003366 720 GANLGQLKQENHELKKRLEKKEGEL 744 (826)
Q Consensus 720 ~~~~~~~~~e~~~~~~~~~~~~~~~ 744 (826)
.+.|++|++|.-+|++||..+++.|
T Consensus 79 ~~eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 79 KAEIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777766654
No 325
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=53.29 E-value=68 Score=36.06 Aligned_cols=65 Identities=20% Similarity=0.338 Sum_probs=50.0
Q ss_pred hhhhhhhhhHHHHHHHHhHHhH---HHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 003366 723 LGQLKQENHELKKRLEKKEGEL---QEER----ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRE 787 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~---~~e~----~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~ 787 (826)
|..|.+|...-.|...+.++++ +.++ .|||.+..+-+++++.|..+.--|..|..=+.|=++|-.
T Consensus 215 ia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~ 286 (306)
T PF04849_consen 215 IASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYA 286 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666663 3444 899999999999999999999999999888888777753
No 326
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=53.20 E-value=1e+02 Score=36.09 Aligned_cols=66 Identities=18% Similarity=0.158 Sum_probs=35.9
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 744 LQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLD 809 (826)
Q Consensus 744 ~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~ 809 (826)
+++|+++-.....+.++-.++|+..-|+|+.=|+-..+++.+-..+...++++|.+.-..|+.|-.
T Consensus 43 ~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 43 IQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 344443333333333444445555555555555666666666666666666666666666654443
No 327
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=52.95 E-value=1.4e+02 Score=36.49 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003366 786 REREEENLRKKIKDASDTIQDLLDKIKL 813 (826)
Q Consensus 786 r~~e~~~lr~kl~~a~~~i~~~~~~~~~ 813 (826)
.-+|.+++|.++++....|+.--+.+++
T Consensus 445 ~~~~ik~~r~~~k~~~~e~~~Kee~~~q 472 (594)
T PF05667_consen 445 KLQEIKELREEIKEIEEEIRQKEELYKQ 472 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777777777554444443
No 328
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=52.90 E-value=95 Score=37.91 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=18.8
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhH
Q 003366 720 GANLGQLKQENHELKKRLEKKEGEL 744 (826)
Q Consensus 720 ~~~~~~~~~e~~~~~~~~~~~~~~~ 744 (826)
+..++.|+.||++|+-.|..++..+
T Consensus 428 ~~~ve~l~~e~~~L~~~~ee~k~ei 452 (652)
T COG2433 428 EETVERLEEENSELKRELEELKREI 452 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888888888888777766554
No 329
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=52.90 E-value=33 Score=33.86 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 003366 785 RREREEENLRKKIKDASDTIQ 805 (826)
Q Consensus 785 rr~~e~~~lr~kl~~a~~~i~ 805 (826)
.-..|||.|+.+|+.-...+.
T Consensus 104 ~l~~eEe~L~~~le~l~~~l~ 124 (141)
T PF13874_consen 104 ALSPEEEELRKRLEALEAQLN 124 (141)
T ss_dssp ---------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHc
Confidence 346899999999986555443
No 330
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=52.88 E-value=1.6e+02 Score=34.80 Aligned_cols=93 Identities=23% Similarity=0.259 Sum_probs=54.0
Q ss_pred hhhhhhhhhHHHHHHHHhHHh----------HHHHHH------------hhhcHHHHHHHHHHHHHHHHHHHHHH-----
Q 003366 723 LGQLKQENHELKKRLEKKEGE----------LQEERE------------RCRSLEAQLKVMQQTIEELNKEQESL----- 775 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~----------~~~e~~------------~~~~l~~~~~~~~~~~~~~~keq~~l----- 775 (826)
|+...++..+|.+||.+-.++ |++.++ .|..+..+||.++-+|+++.||-|+=
T Consensus 254 Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~~L~kAEkele~nS~wsa 333 (575)
T KOG4403|consen 254 LQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRVALEKAEKELEANSSWSA 333 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 555667788888888876665 222221 12222245666777788888876642
Q ss_pred HHHH-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003366 776 IDIF-AEERDRREREEENLRKKIKDASDTIQDLLDKIKLLE 815 (826)
Q Consensus 776 i~~f-~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~ 815 (826)
=+.+ .=-+--.+-|.+++.+|-..|-..++.-.|-...+.
T Consensus 334 P~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklk 374 (575)
T KOG4403|consen 334 PLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLK 374 (575)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 0111 112334567788888888777777665555444443
No 331
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=52.81 E-value=32 Score=40.49 Aligned_cols=51 Identities=33% Similarity=0.457 Sum_probs=25.7
Q ss_pred HHHHHHhhhcHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 003366 744 LQEERERCRSLEAQLKVM-------QQTIEELNKEQESLIDIFAEERDRREREEENLR 794 (826)
Q Consensus 744 ~~~e~~~~~~l~~~~~~~-------~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr 794 (826)
+.+|++-+.+||.||.+- |+++..-.|.-.-|-+.+--|-.||+|+|..|.
T Consensus 537 ~lrerelreslekql~~ErklR~~~qkr~kkEkk~k~k~qe~L~~~sk~reqaeqs~~ 594 (641)
T KOG3915|consen 537 FLRERELRESLEKQLAMERKLRAIVQKRLKKEKKAKRKLQEALEFESKRREQAEQSLK 594 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhccc
Confidence 456666667777776432 222222222223333344444567777776553
No 332
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=52.66 E-value=2.5e+02 Score=30.60 Aligned_cols=91 Identities=21% Similarity=0.292 Sum_probs=55.7
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhc----------------------HHHHHHHH-------HHHHHHHHHHH
Q 003366 722 NLGQLKQENHELKKRLEKKEGELQEERERCRS----------------------LEAQLKVM-------QQTIEELNKEQ 772 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~----------------------l~~~~~~~-------~~~~~~~~keq 772 (826)
.|-.|++...+-|..+..++.+--+|..|+|+ +..+|..| ++.|||. |+
T Consensus 98 lI~pLe~k~E~wkk~~~~ldKd~~k~~kk~R~elKk~~~dt~klqkk~rKg~~~~~~~ldsa~~dvn~k~~~lEe~--ek 175 (231)
T cd07643 98 LVNPLQEKIEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTIRLQKKARKGKGDLQPQLDSAMQDVNDKYLLLEET--EK 175 (231)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHHHH--HH
Confidence 45666666677777777777776566655542 12222222 2223332 67
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHH------HHHHHHHHHHhhh
Q 003366 773 ESLIDIFAEERDRREREEENLRKKIKDAS------DTIQDLLDKIKLL 814 (826)
Q Consensus 773 ~~li~~f~eer~rr~~e~~~lr~kl~~a~------~~i~~~~~~~~~~ 814 (826)
.+|-+++-|||.|.--=.-.|+-=|.+-. ..+|++++.|..+
T Consensus 176 ~alR~aLiEER~Rfc~Fvs~l~pVl~~e~~ml~E~~hl~~~~~~l~~~ 223 (231)
T cd07643 176 KAVRNALIEERGRFCTFVSFLKPVLDEEISMLGEVTHLQTIMEDLASL 223 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 79999999999999776666665555332 3457777766644
No 333
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=52.63 E-value=1.5e+02 Score=39.35 Aligned_cols=15 Identities=13% Similarity=0.412 Sum_probs=10.3
Q ss_pred ECCCCCCHHHHhhhc
Q 003366 194 DNGGGMNPDKMRHCM 208 (826)
Q Consensus 194 DNG~GMs~eeL~~~L 208 (826)
.+|.-|+..+|...+
T Consensus 138 ~~~~plt~~~l~~~l 152 (1353)
T TIGR02680 138 PAGIPLTRDRLKEAL 152 (1353)
T ss_pred CCCccCCHHHHHHHh
Confidence 456777777777755
No 334
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=52.62 E-value=1.4e+02 Score=36.49 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 003366 792 NLRKKIKDASDTIQDLLDKIKLLE 815 (826)
Q Consensus 792 ~lr~kl~~a~~~i~~~~~~~~~~~ 815 (826)
.+-.++|..-..|+++.+.++.-+
T Consensus 444 ~~~~~ik~~r~~~k~~~~e~~~Ke 467 (594)
T PF05667_consen 444 QKLQEIKELREEIKEIEEEIRQKE 467 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666666665443
No 335
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=52.55 E-value=25 Score=39.24 Aligned_cols=70 Identities=31% Similarity=0.434 Sum_probs=38.8
Q ss_pred hhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 003366 725 QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTI 804 (826)
Q Consensus 725 ~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i 804 (826)
-++++..++.+.|...++.|..-.++...|+.+|+.++.++++..+|+..| ..+.+....||.-|..-|
T Consensus 218 P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l-----------~~~~~~~~~kl~rA~~Li 286 (344)
T PF12777_consen 218 PKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQEL-----------EEEIEETERKLERAEKLI 286 (344)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhhhccHHHHH
Confidence 344444444444444555554444555556666666666666665555444 344555666777776655
Q ss_pred H
Q 003366 805 Q 805 (826)
Q Consensus 805 ~ 805 (826)
.
T Consensus 287 ~ 287 (344)
T PF12777_consen 287 S 287 (344)
T ss_dssp H
T ss_pred h
Confidence 3
No 336
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=52.53 E-value=1.4e+02 Score=32.72 Aligned_cols=19 Identities=32% Similarity=0.566 Sum_probs=10.1
Q ss_pred HhhhcHHHHHHHHHHHHHH
Q 003366 749 ERCRSLEAQLKVMQQTIEE 767 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~ 767 (826)
++++++++++..++++++.
T Consensus 236 ~~~~~~ee~~~~L~ekme~ 254 (297)
T PF02841_consen 236 QQERSYEEHIKQLKEKMEE 254 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554444
No 337
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=52.29 E-value=2.6e+02 Score=28.26 Aligned_cols=46 Identities=15% Similarity=0.235 Sum_probs=27.9
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 733 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDI 778 (826)
Q Consensus 733 ~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~ 778 (826)
|.+|=.+..+++..=-+.++..++.+++++++|+++.+|-..+++-
T Consensus 47 l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~ 92 (175)
T PRK14472 47 LEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIRE 92 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443333555556666777788888888777766654
No 338
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=52.18 E-value=2.2e+02 Score=29.10 Aligned_cols=47 Identities=13% Similarity=0.126 Sum_probs=27.4
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 733 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIF 779 (826)
Q Consensus 733 ~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f 779 (826)
|.+|=.....+++.=-+.....+..+.+++++|+++.+|...+++--
T Consensus 53 l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A 99 (184)
T CHL00019 53 LDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNG 99 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433335555566666777777777777776666543
No 339
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=52.15 E-value=1.2e+02 Score=30.53 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=17.1
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhH
Q 003366 722 NLGQLKQENHELKKRLEKKEGEL 744 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~~~~ 744 (826)
-|.+|++|..+|+..+..++.+|
T Consensus 80 ei~~L~~el~~l~~~~k~l~~eL 102 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSLEAEL 102 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 37778888887777777777665
No 340
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=52.07 E-value=2.1e+02 Score=30.02 Aligned_cols=69 Identities=23% Similarity=0.425 Sum_probs=42.1
Q ss_pred ccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 003366 718 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEE 791 (826)
Q Consensus 718 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~ 791 (826)
+|.. |=.|++.-..+.+.++++|..+.++-...+.|++.+.+++++|.++..+... +.++..+.|.|..
T Consensus 94 RL~k-LL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~----~~~~ke~~~~ei~ 162 (190)
T PF05266_consen 94 RLNK-LLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAK----LKEKKEAKDKEIS 162 (190)
T ss_pred HHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 4444 4455666667777777777777666556677788888888888777544332 2334444444443
No 341
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=52.05 E-value=1.6e+02 Score=38.05 Aligned_cols=81 Identities=23% Similarity=0.372 Sum_probs=46.3
Q ss_pred hhhhhhhhhhhHHHHHHHHhHHh----H------HH--HH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003366 721 ANLGQLKQENHELKKRLEKKEGE----L------QE--ER----ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD 784 (826)
Q Consensus 721 ~~~~~~~~e~~~~~~~~~~~~~~----~------~~--e~----~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~ 784 (826)
++||.|-.|..-||.+|.-..+- + +. |+ ++++.|+.+|+.++.+|+.+.--+-...++-.+-..
T Consensus 404 ~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~ 483 (1041)
T KOG0243|consen 404 TLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKE 483 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 57888889998898888765443 1 11 12 455555555555555555544333333333335555
Q ss_pred hhHHHHHHHHHHHHHHH
Q 003366 785 RREREEENLRKKIKDAS 801 (826)
Q Consensus 785 rr~~e~~~lr~kl~~a~ 801 (826)
+-++=+++|.++.++-.
T Consensus 484 ~~~~~k~~L~~~~~el~ 500 (1041)
T KOG0243|consen 484 EKEKLKSKLQNKNKELE 500 (1041)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555666666655443
No 342
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=51.61 E-value=52 Score=35.69 Aligned_cols=11 Identities=27% Similarity=0.401 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 003366 788 REEENLRKKIK 798 (826)
Q Consensus 788 ~e~~~lr~kl~ 798 (826)
.|...|..+++
T Consensus 177 ~E~s~LeE~~~ 187 (290)
T COG4026 177 VENSRLEEMLK 187 (290)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 343
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.46 E-value=1.4e+02 Score=37.53 Aligned_cols=9 Identities=33% Similarity=0.796 Sum_probs=5.5
Q ss_pred CccccCCcc
Q 003366 497 NFVEPAHDK 505 (826)
Q Consensus 497 nflePtHNK 505 (826)
+|--|.|||
T Consensus 186 eWAVp~~~k 194 (1118)
T KOG1029|consen 186 EWAVPQHNK 194 (1118)
T ss_pred hccccchhh
Confidence 445577776
No 344
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=51.34 E-value=2.5e+02 Score=28.47 Aligned_cols=73 Identities=19% Similarity=0.303 Sum_probs=49.1
Q ss_pred HhHHHHHHhhhcHHHHHHHHHHHHHHHHHHH---H------------------------------------HHHHHHHHH
Q 003366 742 GELQEERERCRSLEAQLKVMQQTIEELNKEQ---E------------------------------------SLIDIFAEE 782 (826)
Q Consensus 742 ~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq---~------------------------------------~li~~f~ee 782 (826)
+.|+++++-...+...++.+..+|+.+.... | .-|+++...
T Consensus 23 e~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGsg~~ae~~~~eAie~l~k~ 102 (145)
T COG1730 23 ESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSGYYAEKSADEAIEFLKKR 102 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCCceeeeecHHHHHHHHHHH
Confidence 3467888888888888888888888887766 3 334555555
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003366 783 RDRREREEENLRKKIKDASDTIQDLLDKIKLL 814 (826)
Q Consensus 783 r~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~ 814 (826)
.+.=+...+.|...|.+.+.+|++|..++.++
T Consensus 103 ~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~ 134 (145)
T COG1730 103 IEELEKAIEKLQQALAELAQRIEQLEQEAQQL 134 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555666666667777777666666543
No 345
>PRK14141 heat shock protein GrpE; Provisional
Probab=51.30 E-value=1.7e+02 Score=31.24 Aligned_cols=92 Identities=18% Similarity=0.226 Sum_probs=54.0
Q ss_pred cccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhh--------H
Q 003366 717 CSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESLIDIFAEERDRR--------E 787 (826)
Q Consensus 717 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~-~~~~~~keq~~li~~f~eer~rr--------~ 787 (826)
.+++.-|..|++|..+|++++++...+++-=+ |-++.+.+++.+ -++.+-++---++|-|---..-- +
T Consensus 34 ~~~~~~i~~le~e~~elkd~~lR~~Ae~eN~R---KR~~kE~e~~~~~a~~~~~~dLLpViDnLerAl~~~~~~~~~~~~ 110 (209)
T PRK14141 34 DPEPDPLEALKAENAELKDRMLRLAAEMENLR---KRTQRDVADARAYGIAGFARDMLSVSDNLRRALDAIPAEARAAAD 110 (209)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhccccccccccc
Confidence 45666799999999999999998888764322 233334444443 55555566556666553221110 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 788 REEENLRKKIKDASDTIQDLLDKI 811 (826)
Q Consensus 788 ~e~~~lr~kl~~a~~~i~~~~~~~ 811 (826)
.+.+++..-++--.+.+..+|++.
T Consensus 111 ~~~~~l~eGv~mi~k~l~~vLek~ 134 (209)
T PRK14141 111 AGLKALIEGVEMTERAMLNALERH 134 (209)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHC
Confidence 234556555555555555666554
No 346
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.28 E-value=1.5e+02 Score=32.86 Aligned_cols=70 Identities=24% Similarity=0.360 Sum_probs=53.9
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 003366 722 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRK 795 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~ 795 (826)
+|++++++- .+|..++..+..++++...|...++..+++|+.-..||..||.-..-+-+--..|...|.+
T Consensus 149 ile~qk~dk----~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~~ 218 (265)
T COG3883 149 ILEQQKEDK----KSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALEE 218 (265)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 677776654 5556677888888888888888888888888888899999988887776666666666653
No 347
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=51.27 E-value=3e+02 Score=28.55 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=15.2
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 749 ERCRSLEAQLKVMQQTIEELNKEQESLID 777 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~~keq~~li~ 777 (826)
.+-..++.+++.++++++++...-+.|.+
T Consensus 91 ~~k~~~e~~~~~l~~~~~~~~~~~~~l~~ 119 (221)
T PF04012_consen 91 QRKADLEEQAERLEQQLDQAEAQVEKLKE 119 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555444443
No 348
>PRK13411 molecular chaperone DnaK; Provisional
Probab=51.20 E-value=99 Score=37.65 Aligned_cols=64 Identities=9% Similarity=0.115 Sum_probs=37.4
Q ss_pred HhhhcHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003366 749 ERCRSLEAQLKVMQQTIEE-----LNKEQESLIDIFAEERDRR---EREEENLRKKIKDASDTIQDLLDKIK 812 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~-----~~keq~~li~~f~eer~rr---~~e~~~lr~kl~~a~~~i~~~~~~~~ 812 (826)
+....||.-+..++++|++ ...|.+.+.+...+-++-- +.+.+.+++|+++..+.++.+..++-
T Consensus 529 eakN~lEs~iy~~r~~l~~~~~~~~~~er~~i~~~l~~~~~wL~~~~~~~~~~~~~~~el~~~~~~i~~~~y 600 (653)
T PRK13411 529 ELKNQADSLLYSYESTLKENGELISEELKQRAEQKVEQLEAALTDPNISLEELKQQLEEFQQALLAIGAEVY 600 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777753 1222233333333322222 22457788888888888888887764
No 349
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=51.13 E-value=2.2e+02 Score=32.05 Aligned_cols=39 Identities=21% Similarity=0.477 Sum_probs=17.6
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 003366 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRE 787 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~ 787 (826)
+++..|-.++.++..++.++.-+-..|++=+.+=|+.|+
T Consensus 41 ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ 79 (294)
T COG1340 41 EKRDELNAKVRELREKAQELREERDEINEEVQELKEKRD 79 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444443
No 350
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=51.06 E-value=25 Score=43.77 Aligned_cols=49 Identities=20% Similarity=0.329 Sum_probs=35.0
Q ss_pred HHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHh
Q 003366 154 LGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMR 205 (826)
Q Consensus 154 FgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~ 205 (826)
+-.+-|+++||.| .+.++..-.|.+..++ ....|.|.+||.|+.-+...
T Consensus 55 ~ki~dEilvNaad-k~rd~~m~~i~v~i~~--e~~~isv~nnGkGIPv~~H~ 103 (842)
T KOG0355|consen 55 YKIFDEILVNAAD-KQRDPKMNTIKVTIDK--EKNEISVYNNGKGIPVTIHK 103 (842)
T ss_pred HHHHHHHhhcccc-cccCCCcceeEEEEcc--CCCEEEEEeCCCcceeeecc
Confidence 4568999999999 6555554444544444 45689999999999865443
No 351
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=51.01 E-value=1.1e+02 Score=39.76 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=13.8
Q ss_pred ceEEEEEECCCCCCHHHHhhh--ccccccc
Q 003366 187 SRMLLIEDNGGGMNPDKMRHC--MSLGYSA 214 (826)
Q Consensus 187 ~~~L~I~DNG~GMs~eeL~~~--LsfG~Ss 214 (826)
...-.|-=||.|=+- +.+. +.||+.+
T Consensus 109 sFtaIvGPNGSGKSN--VIDsmLFVFGfRA 136 (1293)
T KOG0996|consen 109 SFTAIVGPNGSGKSN--VIDSMLFVFGFRA 136 (1293)
T ss_pred CceeeECCCCCCchH--HHHHHHHHhhhhH
Confidence 344556667777553 3332 2466654
No 352
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=50.89 E-value=60 Score=38.53 Aligned_cols=55 Identities=20% Similarity=0.192 Sum_probs=37.1
Q ss_pred HHHHHhhhcHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 003366 745 QEERERCRSLEAQL----KVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKD 799 (826)
Q Consensus 745 ~~e~~~~~~l~~~~----~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~ 799 (826)
+..++..+.+..+| +-.+-+|-+++++=+-+-++=++|-...+.|-|.|.++|-+
T Consensus 486 ee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~ 544 (622)
T COG5185 486 EEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELND 544 (622)
T ss_pred HHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444433 33444666778888888888888888899999999887754
No 353
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=49.96 E-value=39 Score=29.99 Aligned_cols=40 Identities=25% Similarity=0.255 Sum_probs=25.7
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELN 769 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~ 769 (826)
..+|+.||..|++++...+++- ..|-++.+.|..++|.|.
T Consensus 16 ~~~L~~EN~~Lr~q~~~~~~ER-------~~L~ekne~Ar~rvEamI 55 (65)
T TIGR02449 16 LERLKSENRLLRAQEKTWREER-------AQLLEKNEQARQKVEAMI 55 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 5688999999998876665543 334455555555555543
No 354
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=49.77 E-value=2.6e+02 Score=31.38 Aligned_cols=38 Identities=29% Similarity=0.382 Sum_probs=25.4
Q ss_pred hhhhhhhhHHHHHHHHhHHhH-HHHH-----HhhhcHHHHHHHH
Q 003366 724 GQLKQENHELKKRLEKKEGEL-QEER-----ERCRSLEAQLKVM 761 (826)
Q Consensus 724 ~~~~~e~~~~~~~~~~~~~~~-~~e~-----~~~~~l~~~~~~~ 761 (826)
.+|.+||..|+++|+..-+.. .+|. -+-+.|+.||-+|
T Consensus 131 ~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~A 174 (309)
T PF09728_consen 131 IKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEA 174 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 348899999999999776653 2232 4556666666444
No 355
>PRK14158 heat shock protein GrpE; Provisional
Probab=49.49 E-value=1.1e+02 Score=32.24 Aligned_cols=86 Identities=14% Similarity=0.147 Sum_probs=38.7
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESLIDIFAEERDRR-EREEENLRKKIKDA 800 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~-~~~~~~keq~~li~~f~eer~rr-~~e~~~lr~kl~~a 800 (826)
|..|++|..+|++++.+...++.- =+|-.+.+.+++.+ -++.+-+.--.++|-|---..-- +.+.+++..-++-.
T Consensus 49 l~~le~e~~el~d~~lR~~AefeN---~RkR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~~~~~~i~~Gv~mi 125 (194)
T PRK14158 49 LAAKEAEAAANWDKYLRERADLEN---YRKRVQKEKEELLKYGNESLILEILPAVDNMERALDHADEESMSAIIEGIRMT 125 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhccCcchHHHHHHHHHHH
Confidence 444555555555555554444432 22333444444444 44555555444555553222211 11234455555555
Q ss_pred HHHHHHHHHHH
Q 003366 801 SDTIQDLLDKI 811 (826)
Q Consensus 801 ~~~i~~~~~~~ 811 (826)
.+.+..+|++.
T Consensus 126 ~k~l~~vLek~ 136 (194)
T PRK14158 126 LSMLLSTLKKF 136 (194)
T ss_pred HHHHHHHHHHC
Confidence 55555555544
No 356
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=49.47 E-value=1.5e+02 Score=29.67 Aligned_cols=77 Identities=21% Similarity=0.379 Sum_probs=50.5
Q ss_pred HHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 003366 736 RLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKE----------------QESLIDIFAEERDRREREEENLRKKIKD 799 (826)
Q Consensus 736 ~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~ke----------------q~~li~~f~eer~rr~~e~~~lr~kl~~ 799 (826)
|+..+...+..|+..-|...+-|++|-..|+-++.+ |+.|-+-+-|-..+-+.|-+.|+.+++.
T Consensus 27 rl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~e~ 106 (131)
T KOG1760|consen 27 RLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESELES 106 (131)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444455556666666666666 5666666666667777888888999998
Q ss_pred HHHHHHHHHHHHh
Q 003366 800 ASDTIQDLLDKIK 812 (826)
Q Consensus 800 a~~~i~~~~~~~~ 812 (826)
-+..+++|...|=
T Consensus 107 I~~~m~~LK~~LY 119 (131)
T KOG1760|consen 107 ISARMDELKKVLY 119 (131)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888876664
No 357
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=49.46 E-value=2.6e+02 Score=28.36 Aligned_cols=30 Identities=10% Similarity=0.121 Sum_probs=18.0
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDI 778 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~ 778 (826)
+.+...+..+++.+++|.++.+|...+++-
T Consensus 63 ~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~ 92 (173)
T PRK13453 63 QAKLNAQKLEEENKQKLKETQEEVQKILED 92 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555666666777766666665543
No 358
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=49.31 E-value=1.8e+02 Score=31.10 Aligned_cols=38 Identities=21% Similarity=0.407 Sum_probs=27.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003366 777 DIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLL 814 (826)
Q Consensus 777 ~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~ 814 (826)
+....|=.|+..|.+.||.|+-.-...|++|-+.+..+
T Consensus 69 E~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 69 EVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 35566667788888888888877777777777766654
No 359
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=49.24 E-value=2.8e+02 Score=28.32 Aligned_cols=46 Identities=9% Similarity=0.184 Sum_probs=25.6
Q ss_pred HHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 732 ELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID 777 (826)
Q Consensus 732 ~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~ 777 (826)
-|.+|-.+.+++|..=-..++.++.-+++.+.+|.++.+|-..+|+
T Consensus 32 ~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~ 77 (154)
T PRK06568 32 SLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIE 77 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555554333333444555556666777777777666443
No 360
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=49.18 E-value=65 Score=35.22 Aligned_cols=43 Identities=28% Similarity=0.462 Sum_probs=34.0
Q ss_pred hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 731 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLI 776 (826)
Q Consensus 731 ~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li 776 (826)
.+-+||..+--+-+++.|++.|..+ .++++++.+|.||+++|.
T Consensus 193 ~~y~err~rNN~A~~kSR~~~k~~~---~e~~~r~~~leken~~lr 235 (269)
T KOG3119|consen 193 PEYKERRRRNNEAVRKSRDKRKQKE---DEMAHRVAELEKENEALR 235 (269)
T ss_pred HHHHHHHHhhhHHHHHhhhhHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4556777777788888888888777 677888888989888774
No 361
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=49.08 E-value=2e+02 Score=32.76 Aligned_cols=28 Identities=11% Similarity=0.233 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003366 787 EREEENLRKKIKDASDTIQDLLDKIKLL 814 (826)
Q Consensus 787 ~~e~~~lr~kl~~a~~~i~~~~~~~~~~ 814 (826)
..|-+.|...++-+-..-..|++++...
T Consensus 341 ~~~~~~L~r~~~~~~~~y~~ll~r~~e~ 368 (444)
T TIGR03017 341 RDEMSVLQRDVENAQRAYDAAMQRYTQT 368 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666666777666544
No 362
>CHL00094 dnaK heat shock protein 70
Probab=49.05 E-value=1.1e+02 Score=36.92 Aligned_cols=63 Identities=8% Similarity=0.216 Sum_probs=35.9
Q ss_pred HhhhcHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 749 ERCRSLEAQLKVMQQTIEE-----LNKEQESLIDIFAEERDRRE-REEENLRKKIKDASDTIQDLLDKI 811 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~-----~~keq~~li~~f~eer~rr~-~e~~~lr~kl~~a~~~i~~~~~~~ 811 (826)
+....||.-+..++++|++ ...|.+.|.+...+-++-=. ..++..++|+++..+.++.+..++
T Consensus 529 ~~kn~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~wl~~~~~~~~~~~~~~l~~~~~~~~~kl 597 (621)
T CHL00094 529 DLKNQAESLCYQAEKQLKELKDKISEEKKEKIENLIKKLRQALQNDNYESIKSLLEELQKALMEIGKEV 597 (621)
T ss_pred HHHHHhHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777777777753 12233333333333322211 144677777777777777777765
No 363
>PRK11519 tyrosine kinase; Provisional
Probab=49.01 E-value=79 Score=38.84 Aligned_cols=30 Identities=30% Similarity=0.374 Sum_probs=19.6
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHHHhh
Q 003366 722 NLGQLKQENHELKKRLEKKEGELQEERERC 751 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~ 751 (826)
.+.-|+++..+++.+|...|..|+.=+.++
T Consensus 268 a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~ 297 (719)
T PRK11519 268 SLAFLAQQLPEVRSRLDVAENKLNAFRQDK 297 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 356667777777777777777765544333
No 364
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=48.88 E-value=1.6e+02 Score=36.08 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=25.9
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003366 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD 784 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~ 784 (826)
..|+.|..||.++|..+-.++++--.|.+.+.-|.-
T Consensus 160 sQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~ 195 (617)
T PF15070_consen 160 SQNRELKEQLAELQDAFVKLTNENMELTSALQSEQH 195 (617)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHH
Confidence 456777888888888888888887666666554443
No 365
>PRK14155 heat shock protein GrpE; Provisional
Probab=48.85 E-value=2.2e+02 Score=30.44 Aligned_cols=94 Identities=12% Similarity=0.176 Sum_probs=53.4
Q ss_pred ccccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhh-----HHH
Q 003366 716 DCSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESLIDIFAEERDRR-----ERE 789 (826)
Q Consensus 716 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~-~~~~~~keq~~li~~f~eer~rr-----~~e 789 (826)
...+..-|..|++|..+|++++++...+++-=+ |-.+.+.+++.+ -++.+-+.---++|-|---..-- +.+
T Consensus 15 ~~~l~~~l~~le~e~~elkd~~lR~~AefeN~R---KR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~~~~~~~ 91 (208)
T PRK14155 15 ADDAAQEIEALKAEVAALKDQALRYAAEAENTK---RRAEREMNDARAYAIQKFARDLLGAADNLGRATAASPKDSADPA 91 (208)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHhcccccccchH
Confidence 344555688899999999999988888764322 223333333333 45555555555555553222211 123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 003366 790 EENLRKKIKDASDTIQDLLDKIK 812 (826)
Q Consensus 790 ~~~lr~kl~~a~~~i~~~~~~~~ 812 (826)
.+++..-++--.+.+..+|++..
T Consensus 92 ~~~i~~Gvemi~k~~~~~L~k~G 114 (208)
T PRK14155 92 VKNFIIGVEMTEKELLGAFERNG 114 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC
Confidence 45666666666666666666543
No 366
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=48.82 E-value=1.2e+02 Score=39.63 Aligned_cols=10 Identities=20% Similarity=0.315 Sum_probs=5.7
Q ss_pred HHHHhccchh
Q 003366 157 FAELLDNSLD 166 (826)
Q Consensus 157 IAELIDNAiD 166 (826)
++.||.||-.
T Consensus 144 lS~LIh~S~~ 153 (1293)
T KOG0996|consen 144 LSALIHKSDG 153 (1293)
T ss_pred HHHHHhccCC
Confidence 5566665544
No 367
>PHA02675 ORF104 fusion protein; Provisional
Probab=48.75 E-value=64 Score=30.16 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=37.3
Q ss_pred hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHH
Q 003366 731 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQE 773 (826)
Q Consensus 731 ~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~ 773 (826)
.+|++||-.++...+.=.+.|+.+.+.|.-+++-+|++.+---
T Consensus 33 esle~RL~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~Ml 75 (90)
T PHA02675 33 ESVEERLVSLLDSYKTITDCCRETGARLDRLERHLETLREALL 75 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999988888789999999999999999999876543
No 368
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=48.66 E-value=1.3e+02 Score=33.21 Aligned_cols=19 Identities=16% Similarity=0.352 Sum_probs=11.2
Q ss_pred HHHHHHhhccccccccccC
Q 003366 523 QMQKDYWNNNCHEIGYAPR 541 (826)
Q Consensus 523 qm~~~YW~~~~~~iGy~~~ 541 (826)
+.+-+||-+..-+-+|.+.
T Consensus 40 eglv~YWe~~~kk~~~~~~ 58 (264)
T PF07246_consen 40 EGLVYYWEEEMKKRRMMPG 58 (264)
T ss_pred hHHHHHHHHHHHHhccCCc
Confidence 3455788655555566654
No 369
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=48.52 E-value=2.7e+02 Score=31.46 Aligned_cols=48 Identities=21% Similarity=0.255 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 003366 771 EQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMK 818 (826)
Q Consensus 771 eq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~~~~ 818 (826)
.|+-.-|||..=|.-...+.--|..|-|+-.+.-..|.|++-..|+-|
T Consensus 254 iQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~qyEkEK 301 (305)
T PF14915_consen 254 IQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLYQYEKEK 301 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 455666777776666666666678888999999999999999888655
No 370
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=48.17 E-value=86 Score=30.13 Aligned_cols=50 Identities=34% Similarity=0.555 Sum_probs=29.8
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 003366 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASD 802 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~ 802 (826)
+....|++|+..+.++++++.+.-..|+ ||=.+=..|-+.||..|.+...
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~----EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELL----EENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455555555555555554433333 5666667788888888876544
No 371
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=48.10 E-value=78 Score=38.75 Aligned_cols=36 Identities=8% Similarity=0.128 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh---hcCCCCcc
Q 003366 788 REEENLRKKIKDASDTIQDLLDKIKLLE---KMKTPSIR 823 (826)
Q Consensus 788 ~e~~~lr~kl~~a~~~i~~~~~~~~~~~---~~~~~~~~ 823 (826)
.|-..|....+.+-..-+.||+++...+ .++.++++
T Consensus 376 ~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~~~~~~~~~ 414 (754)
T TIGR01005 376 VDLDALQRDAAAKRQLYESYLTNYRQAASRQNYVPVDAR 414 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcE
Confidence 3444555555555555566666665543 34444443
No 372
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=47.88 E-value=1.7e+02 Score=40.04 Aligned_cols=66 Identities=15% Similarity=0.277 Sum_probs=44.5
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003366 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLL 814 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~ 814 (826)
.....++.++.+++.-|..++++++.=++=|-+-+..++.--++.++.+.++-+-++.++..|..+
T Consensus 798 ~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~ 863 (1822)
T KOG4674|consen 798 ATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSV 863 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777777777777777777777766666777767777777666666666666555433
No 373
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=47.80 E-value=3.1e+02 Score=27.70 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=33.5
Q ss_pred HHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 732 ELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEER 783 (826)
Q Consensus 732 ~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer 783 (826)
-|.+|=.+.+.+++.=.+.+...++.+.+++++|+++.+|-..+++---+|-
T Consensus 44 ~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~ea 95 (173)
T PRK13460 44 ALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAKSDA 95 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544466666777778888888888887777766544443
No 374
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=47.65 E-value=81 Score=30.59 Aligned_cols=48 Identities=25% Similarity=0.445 Sum_probs=30.7
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 003366 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDA 800 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a 800 (826)
++-..|+.|+..+.++++++.+.-..|+ ||=.+=..|-++||.+|.+.
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~----EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELL----EENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555555555555444333 56667778889999999865
No 375
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=47.52 E-value=2.7e+02 Score=30.87 Aligned_cols=51 Identities=33% Similarity=0.459 Sum_probs=40.7
Q ss_pred hhHHHHHHHHhHHhHH--------HHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 730 NHELKKRLEKKEGELQ--------EER----ERCRSLEAQLKVMQQTIEELNKEQESLIDIFA 780 (826)
Q Consensus 730 ~~~~~~~~~~~~~~~~--------~e~----~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~ 780 (826)
.-+|..||.++|-.|. .|+ +|.+.|..|+++|+.=-|.++.-+..+-+|++
T Consensus 156 LLsLs~RLaRve~aL~~~~~~~~~~Er~~L~~k~~~L~~Q~edAk~LKe~~drRe~~v~~iL~ 218 (264)
T PF08687_consen 156 LLSLSGRLARVENALSSLDEDADPEERESLLEKRRLLQRQLEDAKELKENLDRRERVVSEILA 218 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3789999999998871 344 78888888888888877888888888888875
No 376
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=47.49 E-value=1.3e+02 Score=36.35 Aligned_cols=37 Identities=22% Similarity=0.463 Sum_probs=24.1
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhH
Q 003366 751 CRSLEAQLKVMQQTIEELNKEQESLIDIF----AEERDRRE 787 (826)
Q Consensus 751 ~~~l~~~~~~~~~~~~~~~keq~~li~~f----~eer~rr~ 787 (826)
--.|...|++.+.+|+..+++|+.+-+-+ -+|+..|+
T Consensus 377 yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are 417 (570)
T COG4477 377 YSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARE 417 (570)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34566677888888888888886554444 44444443
No 377
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=47.45 E-value=1.2e+02 Score=31.65 Aligned_cols=41 Identities=34% Similarity=0.460 Sum_probs=33.9
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 003366 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRERE 789 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e 789 (826)
+|...++.+++++++..+++.++=+.+-+..-+|-.|.+.|
T Consensus 143 ~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~ 183 (216)
T cd07627 143 EKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFERE 183 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667888888888888888888888888888888888765
No 378
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=47.24 E-value=1.7e+02 Score=26.30 Aligned_cols=31 Identities=26% Similarity=0.475 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003366 755 EAQLKVMQQTIEELNKEQESLIDIFAEERDR 785 (826)
Q Consensus 755 ~~~~~~~~~~~~~~~keq~~li~~f~eer~r 785 (826)
.--|+.+..++.++.+.|+.|++....|...
T Consensus 13 ~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~ 43 (92)
T PF14712_consen 13 EPDLDRLDQQLQELRQSQEELLQQIDRLNEK 43 (92)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555554444433
No 379
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=47.08 E-value=59 Score=29.55 Aligned_cols=58 Identities=22% Similarity=0.316 Sum_probs=38.6
Q ss_pred ccchhhhhhhhhhhHHHHHHHHhHHhHHH-----HHHhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 003366 718 SLGANLGQLKQENHELKKRLEKKEGELQE-----ERERCRSLEAQLKVMQQTIEELNKEQESL 775 (826)
Q Consensus 718 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~-----e~~~~~~l~~~~~~~~~~~~~~~keq~~l 775 (826)
.|..+|+.|.+|...++-.+..+.+.+.+ -..+++.|+..|+.+..++|.-...=+.|
T Consensus 14 ~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~L 76 (79)
T PF06657_consen 14 ALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYKL 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567888888887777766666554421 22678888888888888887654444444
No 380
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=47.03 E-value=2.9e+02 Score=31.20 Aligned_cols=67 Identities=22% Similarity=0.355 Sum_probs=51.9
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003366 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRE---REEENLRKKIKDASDTIQDLLDKIKLLE 815 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~---~e~~~lr~kl~~a~~~i~~~~~~~~~~~ 815 (826)
+++..|..++..+..+..++|+.=.-+++--.+=|.+|| .+...||.|..+--..+|+|...++.+.
T Consensus 27 ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~ 96 (294)
T COG1340 27 EKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELK 96 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888888888877766666666666655 5888899999888888888887776543
No 381
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=46.81 E-value=3e+02 Score=28.25 Aligned_cols=17 Identities=12% Similarity=0.241 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003366 758 LKVMQQTIEELNKEQES 774 (826)
Q Consensus 758 ~~~~~~~~~~~~keq~~ 774 (826)
+++.+.+|.++.+|-..
T Consensus 85 ~~eye~~L~~Ar~EA~~ 101 (181)
T PRK13454 85 EKAYNKALADARAEAQR 101 (181)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444443333
No 382
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=46.59 E-value=74 Score=29.29 Aligned_cols=54 Identities=24% Similarity=0.385 Sum_probs=33.7
Q ss_pred HHHHH-HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 003366 744 LQEER-ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIK 798 (826)
Q Consensus 744 ~~~e~-~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~ 798 (826)
+.+|+ ..|++|+.+|+++++.+.-+.+.-+.- .|=.+|-.+|.+=...+|.+++
T Consensus 40 ~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF-~l~~~Ei~~Rr~fv~~~~~~i~ 94 (97)
T PF09177_consen 40 LKRELRNALQSIEWDLEDLEEAVRIVEKNPSKF-NLSEEEISRRRQFVSAIRNQIK 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-T-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc-CCCHHHHHHHHHHHHHHHHHHH
Confidence 45555 667777888888777766654443332 4445667777766666666665
No 383
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=46.59 E-value=2.6e+02 Score=34.04 Aligned_cols=92 Identities=23% Similarity=0.375 Sum_probs=41.1
Q ss_pred hhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHH----------HHHHHHHHHHHH---HHHHHHHhhhH
Q 003366 721 ANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQT----------IEELNKEQESLI---DIFAEERDRRE 787 (826)
Q Consensus 721 ~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~----------~~~~~keq~~li---~~f~eer~rr~ 787 (826)
+.+.|+++.+..+-..|.++.+++...-+.|++|..+..+++.+ +|.||.|-+.|- +-..-++++-+
T Consensus 280 ~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~ 359 (581)
T KOG0995|consen 280 AYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLS 359 (581)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566665555555444444444432223333333333333322 234444444332 22233555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 003366 788 REEENLRKKIKDASDTIQDLLDKIK 812 (826)
Q Consensus 788 ~e~~~lr~kl~~a~~~i~~~~~~~~ 812 (826)
+|.-++.-++.+--..|+.++-+++
T Consensus 360 k~vw~~~l~~~~~f~~le~~~~~~~ 384 (581)
T KOG0995|consen 360 KEVWELKLEIEDFFKELEKKFIDLN 384 (581)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 5555555544544444444444443
No 384
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=46.41 E-value=2.7e+02 Score=33.17 Aligned_cols=32 Identities=13% Similarity=0.287 Sum_probs=19.7
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003366 783 RDRREREEENLRKKIKDASDTIQDLLDKIKLL 814 (826)
Q Consensus 783 r~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~ 814 (826)
..+=++|....-.||.++...|+.|-+.+...
T Consensus 366 ~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~ 397 (582)
T PF09731_consen 366 KEKVEQERNGRLAKLAELNSRLKALEEALDAR 397 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666677777777776666555443
No 385
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.34 E-value=1.9e+02 Score=34.81 Aligned_cols=29 Identities=31% Similarity=0.377 Sum_probs=22.6
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHH
Q 003366 720 GANLGQLKQENHELKKRLEKKEGELQEER 748 (826)
Q Consensus 720 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~ 748 (826)
.|.++.+..+|.-++|||+-.+++...-+
T Consensus 196 ~t~~a~~e~~nrh~~erlk~~~~s~~e~l 224 (613)
T KOG0992|consen 196 TTTLAAVEEENRHLKERLKIVEESRLESL 224 (613)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578888999999999998888754444
No 386
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=46.28 E-value=34 Score=43.48 Aligned_cols=44 Identities=23% Similarity=0.403 Sum_probs=24.6
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 003366 722 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKE 771 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~ke 771 (826)
+|..|++|...|++-|... |..+...|+++|++.++-|+|+++-
T Consensus 365 virElReEve~lr~qL~~a------e~~~~~el~e~l~esekli~ei~~t 408 (1714)
T KOG0241|consen 365 VIRELREEVEKLREQLEQA------EAMKLPELKEKLEESEKLIKEITVT 408 (1714)
T ss_pred HHHHHHHHHHHHHHHHhhh------hhccchHHHHHHHHHHHHHHHHHhH
Confidence 4555555555555444432 4555556666666666666666553
No 387
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=46.08 E-value=2.6e+02 Score=26.56 Aligned_cols=45 Identities=20% Similarity=0.300 Sum_probs=32.0
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHH
Q 003366 722 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIE 766 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~ 766 (826)
.+.++-+++.++.++|...+.+-.+=..+++.|..+++++.++.+
T Consensus 4 ~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~ 48 (106)
T PF05837_consen 4 EILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQK 48 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 366778899999999988887765555666677666665555443
No 388
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=45.83 E-value=1e+02 Score=30.46 Aligned_cols=14 Identities=36% Similarity=0.460 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 003366 791 ENLRKKIKDASDTI 804 (826)
Q Consensus 791 ~~lr~kl~~a~~~i 804 (826)
.+|-+|.++..+.|
T Consensus 92 k~llk~y~~~~~~L 105 (126)
T PF09403_consen 92 KELLKKYKDLLNKL 105 (126)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 389
>PHA00728 hypothetical protein
Probab=45.61 E-value=16 Score=35.99 Aligned_cols=26 Identities=42% Similarity=0.606 Sum_probs=22.2
Q ss_pred hhhhhhhhhhhHHHHHHHHhHHhHHH
Q 003366 721 ANLGQLKQENHELKKRLEKKEGELQE 746 (826)
Q Consensus 721 ~~~~~~~~e~~~~~~~~~~~~~~~~~ 746 (826)
|-+.||++||.|||.+|.++|.-+-.
T Consensus 5 teveql~keneelkkkla~leal~nn 30 (151)
T PHA00728 5 TEVEQLKKENEELKKKLAELEALMNN 30 (151)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHcC
Confidence 45899999999999999999887643
No 390
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=45.58 E-value=3.2e+02 Score=29.61 Aligned_cols=30 Identities=13% Similarity=0.240 Sum_probs=15.9
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDI 778 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~ 778 (826)
++....+..+++++++++++.+|...+++-
T Consensus 50 ~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~ 79 (250)
T PRK14474 50 QRQQEAGQEAERYRQKQQSLEQQRASFMAQ 79 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555566666666655555543
No 391
>PRK14140 heat shock protein GrpE; Provisional
Probab=45.19 E-value=3.1e+02 Score=28.95 Aligned_cols=85 Identities=16% Similarity=0.302 Sum_probs=38.4
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESLIDIFAEERDRR----EREEENLRKKI 797 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~-~~~~~~keq~~li~~f~eer~rr----~~e~~~lr~kl 797 (826)
|..|++|..+|++++.+..++++ .=+|-.+.+.+++.. -++.+-+.---++|-| ||... +.+..++..-+
T Consensus 46 i~~l~~ei~elkd~~lR~~Ae~e---N~rkR~~rE~~~~~~~a~~~~~~~LLpvlDnL--erAl~~~~~~~~~~~i~~Gv 120 (191)
T PRK14140 46 IAELEAKLDELEERYLRLQADFE---NYKRRIQKENEAAEKYRAQSLASDLLPALDNF--ERALQIEADDEQTKSLLKGV 120 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhccCccchHHHHHHHH
Confidence 33444444444444444444432 122233333344333 4555555555566666 33322 12234555555
Q ss_pred HHHHHHHHHHHHHHh
Q 003366 798 KDASDTIQDLLDKIK 812 (826)
Q Consensus 798 ~~a~~~i~~~~~~~~ 812 (826)
+--.+.+..+|++..
T Consensus 121 ~mi~k~l~~~L~k~G 135 (191)
T PRK14140 121 EMVHRQLLEALKKEG 135 (191)
T ss_pred HHHHHHHHHHHHHCC
Confidence 555555555555543
No 392
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=45.11 E-value=3.7e+02 Score=28.39 Aligned_cols=34 Identities=12% Similarity=0.176 Sum_probs=14.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 003366 778 IFAEERDRREREEENLRKKIK-DASDTIQDLLDKI 811 (826)
Q Consensus 778 ~f~eer~rr~~e~~~lr~kl~-~a~~~i~~~~~~~ 811 (826)
++.+=+.+-.+|.+..+.-|+ .+..+-.++.+||
T Consensus 150 ~l~~Ae~~I~~ek~~A~~el~~~a~e~A~~I~~Kl 184 (204)
T PRK09174 150 KLKEAEARIAAIKAKAMADVGSIAEETAAAIVEQL 184 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555544444 2333333444443
No 393
>PRK14141 heat shock protein GrpE; Provisional
Probab=45.01 E-value=1.2e+02 Score=32.36 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 003366 754 LEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRK 795 (826)
Q Consensus 754 l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~ 795 (826)
|+.+++.+++++++++.....+.-=|-.-|.|-.+|.+.+++
T Consensus 36 ~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~ 77 (209)
T PRK14141 36 EPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARA 77 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444433333333355556666666666554
No 394
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=44.91 E-value=1.5e+02 Score=35.91 Aligned_cols=88 Identities=22% Similarity=0.366 Sum_probs=58.5
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhH---HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 003366 722 NLGQLKQENHELKKRLEKKEGEL---QEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIK 798 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~~~~---~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~ 798 (826)
.|.++|+.|.-|++-+..+.++- ..|+..-+.++.+|+++.+.+.+..+.+++=--.||+=++. -+.+++-|+
T Consensus 317 ~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~----l~~~~~~l~ 392 (570)
T COG4477 317 YLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDN----LEEIEKALT 392 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHH----HHHHHHHHH
Confidence 38899999999999998888873 67777788888888888888877777766655556655543 233444444
Q ss_pred HHHHHHHHHHHHHhh
Q 003366 799 DASDTIQDLLDKIKL 813 (826)
Q Consensus 799 ~a~~~i~~~~~~~~~ 813 (826)
+-.+...++-+.|+.
T Consensus 393 ~i~~~q~~~~e~L~~ 407 (570)
T COG4477 393 DIEDEQEKVQEHLTS 407 (570)
T ss_pred HHhhhHHHHHHHHHH
Confidence 444444333333333
No 395
>PF15463 ECM11: Extracellular mutant protein 11
Probab=44.83 E-value=2e+02 Score=28.48 Aligned_cols=60 Identities=13% Similarity=0.211 Sum_probs=43.3
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003366 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLL 808 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~ 808 (826)
+.--.|..|..++-++|-++.++-.-.+.+|..|-++|....+.-...|.+..+.|+.+.
T Consensus 76 ~~Gd~~l~qf~~l~~kl~~~R~~~r~~~~~fe~eI~~R~eav~~~~~~l~~kL~~mk~~G 135 (139)
T PF15463_consen 76 EAGDWFLEQFSELMQKLKEARRKLRKKFAVFEDEINRRAEAVRAQGEQLDRKLEKMKEGG 135 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333456777888888888888888999999999999998766555555555555554443
No 396
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.81 E-value=1.2e+02 Score=36.81 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=18.8
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHH
Q 003366 720 GANLGQLKQENHELKKRLEKKEGELQEER 748 (826)
Q Consensus 720 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~ 748 (826)
+.-|.--++-..+--|++++++|.|++..
T Consensus 256 e~riEtqkqtl~ardesIkkLlEmLq~kg 284 (654)
T KOG4809|consen 256 EQRIETQKQTLDARDESIKKLLEMLQRKG 284 (654)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Confidence 44444445555666788888888887655
No 397
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=44.72 E-value=3e+02 Score=32.96 Aligned_cols=38 Identities=11% Similarity=0.277 Sum_probs=19.9
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003366 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRR 786 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr 786 (826)
..|..++++++.+++.+.++.-+...|---+.++|...
T Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~ 97 (475)
T PRK10361 60 AECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHA 97 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555565555555555555555544444444443
No 398
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=44.66 E-value=69 Score=27.74 Aligned_cols=48 Identities=33% Similarity=0.608 Sum_probs=26.8
Q ss_pred hhhhhhhhhhhHHHHHHHHhHHhH--------------HHHHHhhhcHHHHHHHHHHHHHHH
Q 003366 721 ANLGQLKQENHELKKRLEKKEGEL--------------QEERERCRSLEAQLKVMQQTIEEL 768 (826)
Q Consensus 721 ~~~~~~~~e~~~~~~~~~~~~~~~--------------~~e~~~~~~l~~~~~~~~~~~~~~ 768 (826)
+-++.|..+...+...+.+.+.-| ..|++|...++.+++.++.+|+.|
T Consensus 4 ~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555555555555555555443 555566666666666666666554
No 399
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=44.58 E-value=2e+02 Score=34.16 Aligned_cols=76 Identities=22% Similarity=0.360 Sum_probs=47.8
Q ss_pred hhhhhhhhhHHHHHHHHh-HHh---H--H---HHH--HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 003366 723 LGQLKQENHELKKRLEKK-EGE---L--Q---EER--ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEE 791 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~-~~~---~--~---~e~--~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~ 791 (826)
+..+++|...|+.+|... .+. + + +++ ++.++|.++|.+++..|..-+..-...+-.|-+.--..+.|-.
T Consensus 118 l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~~e~~~~ 197 (511)
T PF09787_consen 118 LQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFLKRTLKKEIERQ 197 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666666665 111 1 1 122 5558899998888887776665555666666666666666666
Q ss_pred HHHHHHH
Q 003366 792 NLRKKIK 798 (826)
Q Consensus 792 ~lr~kl~ 798 (826)
.|..+++
T Consensus 198 ~L~~~~~ 204 (511)
T PF09787_consen 198 ELEERPK 204 (511)
T ss_pred HHHHHHH
Confidence 6666665
No 400
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=44.52 E-value=25 Score=33.40 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 003366 791 ENLRKKIKDASDTIQDLLDKIKLLE 815 (826)
Q Consensus 791 ~~lr~kl~~a~~~i~~~~~~~~~~~ 815 (826)
..|++.|+++-..|..|-.+|..|.
T Consensus 54 ~~le~~l~e~~~~l~~lq~qL~~LK 78 (100)
T PF06428_consen 54 EQLEKQLKEKEALLESLQAQLKELK 78 (100)
T ss_dssp HHHHHCTTHHCHCCCHCTSSSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888777766666655554
No 401
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=44.33 E-value=2.2e+02 Score=34.02 Aligned_cols=80 Identities=24% Similarity=0.403 Sum_probs=44.9
Q ss_pred hhhhhhhhhhHHHHHHHHhHHh-HHHH---------H-HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 003366 722 NLGQLKQENHELKKRLEKKEGE-LQEE---------R-ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREE 790 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~~~-~~~e---------~-~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~ 790 (826)
-+..|..|...||+-|...... .+-+ + ..+..++..|++++++|+.|+++- ..-
T Consensus 173 kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~---------------~~~ 237 (522)
T PF05701_consen 173 KVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEEL---------------EAA 237 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHH
Confidence 3666777777788777765332 1111 1 333344444555555555555443 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 003366 791 ENLRKKIKDASDTIQDLLDKIKLLEK 816 (826)
Q Consensus 791 ~~lr~kl~~a~~~i~~~~~~~~~~~~ 816 (826)
.+|..||..++..|..|-.+|.....
T Consensus 238 k~Le~kL~~a~~~l~~Lq~El~~~~~ 263 (522)
T PF05701_consen 238 KDLESKLAEASAELESLQAELEAAKE 263 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777766665443
No 402
>KOG2701 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.29 E-value=2.6e+02 Score=34.29 Aligned_cols=86 Identities=17% Similarity=0.137 Sum_probs=63.0
Q ss_pred HHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 003366 736 RLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID--------IFAEERDRREREEENLRKKIKDASDTIQDL 807 (826)
Q Consensus 736 ~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~--------~f~eer~rr~~e~~~lr~kl~~a~~~i~~~ 807 (826)
++...+....+|.+-...+-++..+++.++..++|+|+.+-. +..+=+++-.++++-++.-.+-++.+++++
T Consensus 307 ~~~~e~~~~~e~~d~~~~~~~r~~e~~~r~~a~dk~~~~~~~~~~~~~~~~vq~li~l~~~~~e~~sae~E~~~rc~~~~ 386 (608)
T KOG2701|consen 307 SSIEEEMFFDEEADSYNERKKREAELEYRLRALDKYQEFLESTSDERDPDFVQKLISLTQMEEELKSAEAEFKVRCRSDL 386 (608)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344446777788888889999999999999999998754 345556778888999999999899988876
Q ss_pred HHHHhhhhhcCCCC
Q 003366 808 LDKIKLLEKMKTPS 821 (826)
Q Consensus 808 ~~~~~~~~~~~~~~ 821 (826)
-.-..+.++.++|+
T Consensus 387 ~nl~~qi~Dl~~~~ 400 (608)
T KOG2701|consen 387 ANLQDQIRDLKSPK 400 (608)
T ss_pred HHHHHHHHhhhccc
Confidence 54444444444443
No 403
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=44.25 E-value=2.4e+02 Score=34.78 Aligned_cols=56 Identities=18% Similarity=0.297 Sum_probs=32.8
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHHHhhh---------cHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 722 NLGQLKQENHELKKRLEKKEGELQEERERCR---------SLEAQLKVMQQTIEELNKEQESLID 777 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~---------~l~~~~~~~~~~~~~~~keq~~li~ 777 (826)
.++-|.++..+|+.+|...|..|+.=+.+++ .+-.++.++++|+.+++.....|..
T Consensus 268 a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~ 332 (726)
T PRK09841 268 SLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQ 332 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677788888888888888888755443332 2333445555555555444444333
No 404
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=44.14 E-value=2.3e+02 Score=26.74 Aligned_cols=33 Identities=27% Similarity=0.460 Sum_probs=18.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003366 776 IDIFAEERDRREREEENLRKKIKDASDTIQDLL 808 (826)
Q Consensus 776 i~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~ 808 (826)
|+...+...+-+...+-|++++++.-..|++++
T Consensus 76 ~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 76 KETLELRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444455555666666666666666655
No 405
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=44.05 E-value=35 Score=38.73 Aligned_cols=73 Identities=25% Similarity=0.281 Sum_probs=42.3
Q ss_pred HHHHHHHHhccchhhhhCCCc---eEE------EEEEEccC--CCceEEEEEECCCCCCHHHHhhhccccccccccCCcc
Q 003366 153 ALGAFAELLDNSLDEVCNGAT---YSN------IDMLINRK--DGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANT 221 (826)
Q Consensus 153 pFgAIAELIDNAiDA~~~gAt---~V~------Idi~~~~~--~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~ 221 (826)
...|+-.||.||..|..+.+. .|. +.+..-.. .-..-|.|.|||.|+.++-....+..=-|.|.
T Consensus 242 liQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~r~----- 316 (363)
T COG3852 242 LIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSGRE----- 316 (363)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCceeEeeeeeEEecCCCCCChHHhhhccccccccCC-----
Confidence 457899999999999754221 121 22211100 01234889999999998877766543233332
Q ss_pred cCcccCcccc
Q 003366 222 IGQYGNGFKT 231 (826)
Q Consensus 222 IGrfG~GfKs 231 (826)
|-=|+|+..
T Consensus 317 -~GsGLGLal 325 (363)
T COG3852 317 -GGTGLGLAL 325 (363)
T ss_pred -CCccccHHH
Confidence 233677653
No 406
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=43.79 E-value=1.4e+02 Score=30.15 Aligned_cols=18 Identities=39% Similarity=0.599 Sum_probs=7.3
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 003366 753 SLEAQLKVMQQTIEELNK 770 (826)
Q Consensus 753 ~l~~~~~~~~~~~~~~~k 770 (826)
.|..||.++..+|+.+.+
T Consensus 31 ~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 31 NLKTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344444444444444333
No 407
>PRK11546 zraP zinc resistance protein; Provisional
Probab=43.52 E-value=88 Score=31.69 Aligned_cols=64 Identities=19% Similarity=0.151 Sum_probs=37.5
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 003366 720 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREE 790 (826)
Q Consensus 720 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~ 790 (826)
.+|.+....+-..|++.|.-+..+|+.++...+.=+ ++|..+-||-..|-+-+.|+|-.+|.|-
T Consensus 53 q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~-------~kI~aL~kEI~~Lr~kL~e~r~~~~~~~ 116 (143)
T PRK11546 53 QKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDS-------SKINAVAKEMENLRQSLDELRVKRDIAM 116 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667777788888888888888888873333222 2333333333344444455565555543
No 408
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=43.32 E-value=3.4e+02 Score=26.87 Aligned_cols=36 Identities=36% Similarity=0.484 Sum_probs=20.5
Q ss_pred HHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 003366 735 KRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNK 770 (826)
Q Consensus 735 ~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~k 770 (826)
..++.++..++.=.-....|+++|.+++.-|+|+++
T Consensus 13 ~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~ 48 (119)
T COG1382 13 AQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEK 48 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444444455677777777777776654
No 409
>PRK14154 heat shock protein GrpE; Provisional
Probab=43.30 E-value=1.5e+02 Score=31.78 Aligned_cols=58 Identities=12% Similarity=0.202 Sum_probs=30.8
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 003366 720 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESLIDIFA 780 (826)
Q Consensus 720 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~-~~~~~~keq~~li~~f~ 780 (826)
+.-|..|+++..+|++++++..++++.= +|-.+.+.+++.+ -++.+-+.---++|-|.
T Consensus 58 ~~el~~le~e~~elkd~~lRl~ADfeNy---RKR~~kE~e~~~~~a~e~~~~~LLpVlDnLe 116 (208)
T PRK14154 58 EGQLTRMERKVDEYKTQYLRAQAEMDNL---RKRIEREKADIIKFGSKQLITDLLPVADSLI 116 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHhHHH
Confidence 3346667777777777777666655332 1223333333333 45555555555566553
No 410
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=43.27 E-value=4e+02 Score=29.00 Aligned_cols=9 Identities=56% Similarity=0.733 Sum_probs=3.8
Q ss_pred HHHHhhhcH
Q 003366 746 EERERCRSL 754 (826)
Q Consensus 746 ~e~~~~~~l 754 (826)
+++++.+.|
T Consensus 118 ~~~~R~~~L 126 (327)
T TIGR02971 118 REVDRYRSL 126 (327)
T ss_pred HHHHHHHHH
Confidence 334444444
No 411
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=42.70 E-value=1.3e+02 Score=37.60 Aligned_cols=32 Identities=38% Similarity=0.463 Sum_probs=25.5
Q ss_pred CcccccccchhhhhhhhhhhHHHHHHHHhHHhHH
Q 003366 712 HFLSDCSLGANLGQLKQENHELKKRLEKKEGELQ 745 (826)
Q Consensus 712 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 745 (826)
+.|..+ .+.+-|+.+.|.+|.|||.-.|+.|+
T Consensus 98 ~~Lank--da~lrq~eekn~slqerLelaE~~l~ 129 (916)
T KOG0249|consen 98 NELANK--DADLRQNEEKNRSLQERLELAEPKLQ 129 (916)
T ss_pred HHHhCc--chhhchhHHhhhhhhHHHHHhhHhhH
Confidence 445656 56788999999999999998888763
No 412
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=42.45 E-value=23 Score=30.58 Aligned_cols=28 Identities=25% Similarity=0.504 Sum_probs=21.2
Q ss_pred ccchhhhhhhhhhhHHHHHHHHhHHhHH
Q 003366 718 SLGANLGQLKQENHELKKRLEKKEGELQ 745 (826)
Q Consensus 718 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 745 (826)
+|++.|..+|.||.+|++.+.++++..+
T Consensus 11 ~~~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 11 RIESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677888888888888888877764
No 413
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=42.38 E-value=82 Score=34.54 Aligned_cols=44 Identities=11% Similarity=0.222 Sum_probs=30.9
Q ss_pred hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHH
Q 003366 731 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQES 774 (826)
Q Consensus 731 ~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~ 774 (826)
.+.+||+..+...-+.=.+....||.++.+-+.+|+.+|+-+..
T Consensus 176 ~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~ 219 (259)
T PF08657_consen 176 PGAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSD 219 (259)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 36667666665554444466677888999988999999875444
No 414
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=42.27 E-value=55 Score=38.13 Aligned_cols=58 Identities=24% Similarity=0.359 Sum_probs=44.1
Q ss_pred cchhhhhhhhhhhHHHHHHHHhHHhHHHHH---HhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 719 LGANLGQLKQENHELKKRLEKKEGELQEER---ERCRSLEAQLKVMQQTIEELNKEQESLI 776 (826)
Q Consensus 719 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~---~~~~~l~~~~~~~~~~~~~~~keq~~li 776 (826)
|..-+=++.+|...||+-+.|++..|.+-. --.+.|.++|++++++|+.++..+.+|-
T Consensus 411 l~~~lv~~edeirrlkrdm~klkq~l~RN~gd~v~s~~lqe~L~ev~~~Lasl~aqea~ls 471 (486)
T KOG2185|consen 411 LGAALVEYEDEIRRLKRDMLKLKQMLNRNKGDLVVSEALQERLKEVRKALASLLAQEAALS 471 (486)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333356677888888888888888876554 4456799999999999999988777663
No 415
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=42.26 E-value=2.4e+02 Score=36.26 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=33.6
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHH
Q 003366 720 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIE 766 (826)
Q Consensus 720 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~ 766 (826)
|+...||.+.|-+|.||++-+|+.+ .+++-...+-+||++.++++|
T Consensus 447 E~MV~qLtdknlnlEekVklLeetv-~dlEalee~~EQL~Esn~ele 492 (1243)
T KOG0971|consen 447 EEMVEQLTDKNLNLEEKVKLLEETV-GDLEALEEMNEQLQESNRELE 492 (1243)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 5578899999999999999888875 345555556666666666554
No 416
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=42.23 E-value=3.4e+02 Score=29.80 Aligned_cols=23 Identities=9% Similarity=0.163 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhccc
Q 003366 511 TTVLARLEARLIQMQKDYWNNNC 533 (826)
Q Consensus 511 t~l~~rLe~~L~qm~~~YW~~~~ 533 (826)
....++|...|.....+||..|.
T Consensus 95 ~~~~~~L~~~i~~~~~~~~~~N~ 117 (297)
T PF02841_consen 95 QKYQKKLMEQIEKKFEEFCKQNE 117 (297)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457788888888888886443
No 417
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.22 E-value=90 Score=36.53 Aligned_cols=63 Identities=25% Similarity=0.439 Sum_probs=0.0
Q ss_pred hhhhhhhhHHHHHHHH--hHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 003366 724 GQLKQENHELKKRLEK--KEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDAS 801 (826)
Q Consensus 724 ~~~~~e~~~~~~~~~~--~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~ 801 (826)
..++.|.--|+++|.+ -+.+|..|++|.+.+++.|-++---.| .|.+.|.+||-.|-
T Consensus 117 e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pme---------------------keI~elk~kl~~aE 175 (542)
T KOG0993|consen 117 EKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPME---------------------KEINELKKKLAKAE 175 (542)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHH---------------------HHHHHHHHHHHhHH
Q ss_pred HHHHHH
Q 003366 802 DTIQDL 807 (826)
Q Consensus 802 ~~i~~~ 807 (826)
.-|++|
T Consensus 176 ~~i~El 181 (542)
T KOG0993|consen 176 QRIDEL 181 (542)
T ss_pred HHHHHH
No 418
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=42.11 E-value=2.8e+02 Score=28.03 Aligned_cols=95 Identities=24% Similarity=0.391 Sum_probs=54.1
Q ss_pred hhhhhhhHHHHHHHHhHHhHHHHH--HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 003366 725 QLKQENHELKKRLEKKEGELQEER--ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASD 802 (826)
Q Consensus 725 ~~~~e~~~~~~~~~~~~~~~~~e~--~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~ 802 (826)
+|.++-.+|-+.+...+ +..|. |-..+|+.++++--.-+--.-+.+++.++.+.+|-.|-..-.+.+.++++---+
T Consensus 5 el~~~~~~l~~~~e~~~--~d~e~~~dtLe~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~ 82 (162)
T PF05565_consen 5 ELTDEYLELLELLEEGD--LDEEAIADTLESIEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKE 82 (162)
T ss_pred HHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554332 11121 444456666666666666777888888888877777766555555555555555
Q ss_pred HHHHHHHHHhhhhhcCCCCc
Q 003366 803 TIQDLLDKIKLLEKMKTPSI 822 (826)
Q Consensus 803 ~i~~~~~~~~~~~~~~~~~~ 822 (826)
.+++.|+... ..+.+++.+
T Consensus 83 yL~~~m~~~g-~~ki~t~~~ 101 (162)
T PF05565_consen 83 YLLDAMEAAG-IKKIKTPLF 101 (162)
T ss_pred HHHHHHHHcC-CceeecCce
Confidence 5566655543 234555543
No 419
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=42.09 E-value=38 Score=37.14 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=16.8
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHH
Q 003366 722 NLGQLKQENHELKKRLEKKEGELQ 745 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~~~~~ 745 (826)
.+.+|++||.+||+++..+...++
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~ 90 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLE 90 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888888888776644443
No 420
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=42.07 E-value=1.1e+02 Score=27.00 Aligned_cols=39 Identities=31% Similarity=0.496 Sum_probs=15.7
Q ss_pred HHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 003366 732 ELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNK 770 (826)
Q Consensus 732 ~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~k 770 (826)
+++|||.+.|..+..-.++-..||.+....+++++.+++
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~ 41 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNK 41 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555544433223333333333333333333333
No 421
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=41.59 E-value=3.4e+02 Score=26.34 Aligned_cols=44 Identities=18% Similarity=0.229 Sum_probs=22.7
Q ss_pred HHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 734 KKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLID 777 (826)
Q Consensus 734 ~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~ 777 (826)
.+|=.+..++|..=.+.....+..+++++++|+++.+|-..+++
T Consensus 25 ~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A~~ea~~i~~ 68 (147)
T TIGR01144 25 ETRQKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEIIE 68 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333344445555556666666666665555553
No 422
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=41.58 E-value=2.1e+02 Score=25.49 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 003366 795 KKIKDASDTIQDLLDKIKLLE 815 (826)
Q Consensus 795 ~kl~~a~~~i~~~~~~~~~~~ 815 (826)
.+|-+|-..|++|.+.+.++.
T Consensus 40 ~~l~~a~~e~~~Lk~E~e~L~ 60 (69)
T PF14197_consen 40 RQLGDAYEENNKLKEENEALR 60 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555443
No 423
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=41.38 E-value=2.6e+02 Score=34.20 Aligned_cols=101 Identities=20% Similarity=0.283 Sum_probs=0.0
Q ss_pred hhhhhh----hhhhHHHHHHHHhHHhH---HHHHHhhhcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 003366 722 NLGQLK----QENHELKKRLEKKEGEL---QEERERCRSLEAQL-KVMQQTIEELNKEQESLIDIFAEERDRREREEENL 793 (826)
Q Consensus 722 ~~~~~~----~e~~~~~~~~~~~~~~~---~~e~~~~~~l~~~~-~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~l 793 (826)
.|.+++ .+...+.||+..++..+ ..+.++.-.|.+.| +++.+|.|-+--.-..+-+++.|++++.. |.++-
T Consensus 404 ~i~~~~~~~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~-~~e~~ 482 (607)
T KOG0240|consen 404 SITKLKGSLEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQE-ENEAA 482 (607)
T ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH-HHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCcc
Q 003366 794 RKKIKDASDTIQDLLDKIKLLEKMKTPSIR 823 (826)
Q Consensus 794 r~kl~~a~~~i~~~~~~~~~~~~~~~~~~~ 823 (826)
..++++-.....+|-..-....+.+....+
T Consensus 483 ~~e~~e~~~al~el~~~~~~~~~~~~~~~~ 512 (607)
T KOG0240|consen 483 KDEVKEVLTALEELAVNYDQKSEEKESKLS 512 (607)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhhhh
No 424
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=41.27 E-value=2.3e+02 Score=34.57 Aligned_cols=65 Identities=17% Similarity=0.249 Sum_probs=36.2
Q ss_pred HhhhcHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003366 749 ERCRSLEAQLKVMQQTIEE-------LNKEQESLIDIFAEERDRR----EREEENLRKKIKDASDTIQDLLDKIKL 813 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~-------~~keq~~li~~f~eer~rr----~~e~~~lr~kl~~a~~~i~~~~~~~~~ 813 (826)
+....||+-+.+++.+|++ ...|.+.|.+...+-++-- +.+.+.+..||++..+.++.+..++-.
T Consensus 539 eakN~lEs~Iy~~r~~L~~~~~~~~~t~ee~~~l~~~l~~~~~wL~~~~~~~~~~~~~kl~eL~~~~~pi~~r~~~ 614 (653)
T PTZ00009 539 EAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVESVCNPIMTKMYQ 614 (653)
T ss_pred HHHhhhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5556677777777776643 1223333333333332222 334566777777777777777776643
No 425
>PRK14139 heat shock protein GrpE; Provisional
Probab=41.09 E-value=2.6e+02 Score=29.34 Aligned_cols=88 Identities=15% Similarity=0.233 Sum_probs=41.8
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 003366 720 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESLIDIFAEERDRREREEENLRKKIK 798 (826)
Q Consensus 720 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~-~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~ 798 (826)
.+-|..|++|..+|++++++...+++-= +|-++.+.+++.+ -++.+-++---++|-|---..--+...+++..-++
T Consensus 38 ~~~l~~le~e~~elkd~~lR~~AefeN~---rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLerAl~~~~~~~~~l~~Gv~ 114 (185)
T PRK14139 38 EAELAEAEAKAAELQDSFLRAKAETENV---RRRAQEDVAKAHKFAIESFAESLLPVKDSLEAALADESGDLEKLREGVE 114 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccchHHHHHHHHH
Confidence 3346777778888888887777765322 2223333333333 44444444444444442111111122344444444
Q ss_pred HHHHHHHHHHHH
Q 003366 799 DASDTIQDLLDK 810 (826)
Q Consensus 799 ~a~~~i~~~~~~ 810 (826)
--.+.+..+|++
T Consensus 115 mi~k~l~~vL~k 126 (185)
T PRK14139 115 LTLKQLTSAFEK 126 (185)
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 426
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=40.74 E-value=3e+02 Score=34.86 Aligned_cols=20 Identities=20% Similarity=0.493 Sum_probs=10.2
Q ss_pred eEEEEEECCCCCCHHHHhhhcc
Q 003366 188 RMLLIEDNGGGMNPDKMRHCMS 209 (826)
Q Consensus 188 ~~L~I~DNG~GMs~eeL~~~Ls 209 (826)
-++.+-+||.|= ..|.+||.
T Consensus 27 i~lI~G~nGsGK--SSIldAI~ 46 (908)
T COG0419 27 IFLIVGPNGAGK--SSILDAIT 46 (908)
T ss_pred eEEEECCCCCcH--HHHHHHHH
Confidence 455566666663 33444443
No 427
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=40.70 E-value=2.8e+02 Score=32.47 Aligned_cols=13 Identities=15% Similarity=0.445 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 003366 764 TIEELNKEQESLI 776 (826)
Q Consensus 764 ~~~~~~keq~~li 776 (826)
+|+++.+|-..+|
T Consensus 61 ~L~~Ak~ea~~Ii 73 (445)
T PRK13428 61 AVEDAKAEAARVV 73 (445)
T ss_pred HHHHHHHHHHHHH
Confidence 3555555444443
No 428
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=40.70 E-value=55 Score=39.68 Aligned_cols=55 Identities=25% Similarity=0.349 Sum_probs=29.4
Q ss_pred hhhhhHHHHHHHHhHHhH-------HHHHHh----hhcHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 003366 727 KQENHELKKRLEKKEGEL-------QEERER----CRSLEAQLKVM-QQTIEELNKEQESLIDIFAEE 782 (826)
Q Consensus 727 ~~e~~~~~~~~~~~~~~~-------~~e~~~----~~~l~~~~~~~-~~~~~~~~keq~~li~~f~ee 782 (826)
++.+-+++||+++++++| |+|+|+ ||.|. +|--. -.+--.+.|--.||||.+||-
T Consensus 225 ~K~~vs~~e~i~~LQeE~l~tQ~kYQreLErlEKENkeLr-~lll~kd~k~i~~kklKkSLIDMYSEV 291 (980)
T KOG0447|consen 225 QKRKVSDKEKIDQLQEELLHTQLKYQRILERLEKENKELR-KLVLQKDDKGIHHRKLKKSLIDMYSEV 291 (980)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHhhccchhhHHHHHHHHHHHHHHHH
Confidence 345667777777777775 555543 23333 22110 112234556666777777764
No 429
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=40.67 E-value=2.1e+02 Score=33.02 Aligned_cols=18 Identities=11% Similarity=0.270 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003366 764 TIEELNKEQESLIDIFAE 781 (826)
Q Consensus 764 ~~~~~~keq~~li~~f~e 781 (826)
+++++.++-+.|.+++.+
T Consensus 54 ~~~~~~~~~~~~~el~~~ 71 (360)
T TIGR00019 54 EYQQAQEDIKEAKEILEE 71 (360)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 455566666666766643
No 430
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=40.65 E-value=1.5e+02 Score=33.17 Aligned_cols=21 Identities=43% Similarity=0.724 Sum_probs=11.1
Q ss_pred HhhhcHHHHH--HHHHHHHHHHH
Q 003366 749 ERCRSLEAQL--KVMQQTIEELN 769 (826)
Q Consensus 749 ~~~~~l~~~~--~~~~~~~~~~~ 769 (826)
|.|--.|+|| .||++.|..|.
T Consensus 108 EECHRVEAQLALKEARkEIkQLk 130 (305)
T PF15290_consen 108 EECHRVEAQLALKEARKEIKQLK 130 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666665 44444444443
No 431
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=40.57 E-value=3.2e+02 Score=30.58 Aligned_cols=105 Identities=27% Similarity=0.343 Sum_probs=68.3
Q ss_pred CCcccccccchhhhhhhhhhhHHHHHHHHhHHhH------------HHHHHhhhcHHHHHHHH-----------------
Q 003366 711 EHFLSDCSLGANLGQLKQENHELKKRLEKKEGEL------------QEERERCRSLEAQLKVM----------------- 761 (826)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~------------~~e~~~~~~l~~~~~~~----------------- 761 (826)
+.++-||-|.-....||.|..+-|..|+..+.+| ..=+-||+.|..+-+++
T Consensus 167 R~~llDPAinl~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gria~Le~eLA 246 (330)
T KOG2991|consen 167 RSTLLDPAINLFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRIAELEIELA 246 (330)
T ss_pred HHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 3567888787778888888888887777766665 11226777776554332
Q ss_pred -H-HHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHH---HHHhhhh
Q 003366 762 -Q-QTIEELNKEQESLIDIFAEE---RDRREREEENLRKKIKDASDTIQDLL---DKIKLLE 815 (826)
Q Consensus 762 -~-~~~~~~~keq~~li~~f~ee---r~rr~~e~~~lr~kl~~a~~~i~~~~---~~~~~~~ 815 (826)
| .+-||+.+-|+-|-|..-|- =.+-.--.=-|..|||+--..||.|- +++..+-
T Consensus 247 mQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav 308 (330)
T KOG2991|consen 247 MQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAV 308 (330)
T ss_pred HHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 25678888888887755432 12222222358899999999998874 4555444
No 432
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=40.53 E-value=3.2e+02 Score=25.77 Aligned_cols=38 Identities=29% Similarity=0.404 Sum_probs=24.7
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 003366 733 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNK 770 (826)
Q Consensus 733 ~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~k 770 (826)
+-..++..++.++.=......|+.++.+++..++|+++
T Consensus 8 ~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~ 45 (110)
T TIGR02338 8 QLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELER 45 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33445555555555556677778888887777777765
No 433
>PRK14151 heat shock protein GrpE; Provisional
Probab=40.44 E-value=1.4e+02 Score=30.92 Aligned_cols=92 Identities=15% Similarity=0.254 Sum_probs=52.0
Q ss_pred ccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhh---HHHHHHH
Q 003366 718 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESLIDIFAEERDRR---EREEENL 793 (826)
Q Consensus 718 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~-~~~~~~keq~~li~~f~eer~rr---~~e~~~l 793 (826)
.+.+-|..|++|..+|++++.+..++++-= +|-.+.+.+++.+ -++.+-++---++|-|.--..-- +...+++
T Consensus 24 ~l~~~i~~le~e~~el~d~~lR~~Ae~eN~---rkR~~kE~e~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~~~~~~~~ 100 (176)
T PRK14151 24 DLTARVQELEEQLAAAKDQSLRAAADLQNV---RRRAEQDVEKAHKFALEKFAGDLLPVVDSLERGLELSSADDEAIKPM 100 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchhHHHH
Confidence 445557778888888888887777666432 2333444444444 55566666556666664322211 1223556
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 003366 794 RKKIKDASDTIQDLLDKIK 812 (826)
Q Consensus 794 r~kl~~a~~~i~~~~~~~~ 812 (826)
.+-++-..+.+..+|++..
T Consensus 101 ~~Gv~mi~k~l~~~L~k~G 119 (176)
T PRK14151 101 REGVELTLKMFQDTLKRYQ 119 (176)
T ss_pred HHHHHHHHHHHHHHHHHCC
Confidence 6666666666666665543
No 434
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=40.23 E-value=3.5e+02 Score=26.14 Aligned_cols=7 Identities=29% Similarity=0.710 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 003366 792 NLRKKIK 798 (826)
Q Consensus 792 ~lr~kl~ 798 (826)
+|+.+|.
T Consensus 159 ~l~~~l~ 165 (202)
T PF01442_consen 159 ELRESLE 165 (202)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 435
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=40.17 E-value=9.4 Score=47.73 Aligned_cols=83 Identities=31% Similarity=0.441 Sum_probs=0.0
Q ss_pred CcccccccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHh-------hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003366 712 HFLSDCSLGANLGQLKQENHELKKRLEKKEGELQEERER-------CRSLEAQLKVMQQTIEELNKEQESLIDIFAEERD 784 (826)
Q Consensus 712 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~-------~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~ 784 (826)
.-+++. -....+|.....+|.-||.-++++|..|+.- .+-|..+|+++...|++..-.-.+. .|-+.
T Consensus 25 ~~~e~e--~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~aq----~E~~k 98 (859)
T PF01576_consen 25 SKLEDE--QALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQAQ----IELNK 98 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHhh----HHHHH
Confidence 345554 3346778888899999999999999888832 3456666666666666655443333 34578
Q ss_pred hhHHHHHHHHHHHHHH
Q 003366 785 RREREEENLRKKIKDA 800 (826)
Q Consensus 785 rr~~e~~~lr~kl~~a 800 (826)
+|+.|-..||+.|+++
T Consensus 99 krE~El~~Lrr~LEe~ 114 (859)
T PF01576_consen 99 KREAELAKLRRDLEEA 114 (859)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888888754
No 436
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=40.04 E-value=1.6e+02 Score=31.12 Aligned_cols=54 Identities=17% Similarity=0.361 Sum_probs=25.5
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 003366 752 RSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMK 818 (826)
Q Consensus 752 ~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~~~~ 818 (826)
-...+.++.|.++ |..|+++-...|.|+ .++.|||..|+|| +..|++.....+|
T Consensus 79 ~~rqEa~eaAR~R---mQEE~dakA~~~kEK--q~q~EEEKRrqki--------e~we~~q~Gks~k 132 (190)
T PF06936_consen 79 VRRQEAMEAARRR---MQEELDAKAEEYKEK--QKQEEEEKRRQKI--------EMWESMQEGKSYK 132 (190)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHH--HHHHHHHHHHHHH--------HHHHH--------
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHH--HHHHHHHHHHHHH--------HHHHHHHHHHhcc
Confidence 3334444444443 444555555555443 3677788888888 3455555544444
No 437
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=39.98 E-value=4.8e+02 Score=27.93 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=15.7
Q ss_pred cchhhhhhhhh-------hhHHHHHHHHhHHh
Q 003366 719 LGANLGQLKQE-------NHELKKRLEKKEGE 743 (826)
Q Consensus 719 ~~~~~~~~~~e-------~~~~~~~~~~~~~~ 743 (826)
+.++++.++.| +.+|+.|+..+...
T Consensus 7 ~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~ 38 (207)
T PF05010_consen 7 LDAAIKKVQEEVAEKEEEEQELKKKYEELHKE 38 (207)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 44566666666 67777776655544
No 438
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=39.88 E-value=3.3e+02 Score=34.94 Aligned_cols=15 Identities=20% Similarity=0.332 Sum_probs=8.6
Q ss_pred hhhhhHHHHHHHHhh
Q 003366 382 TYRHSLRSYASILYL 396 (826)
Q Consensus 382 ~~~~SLRaYLSILYL 396 (826)
.+..+|=++-..+|.
T Consensus 156 d~~D~ll~lq~~vF~ 170 (980)
T KOG0980|consen 156 DYMDSLLELQQTVFS 170 (980)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555566666664
No 439
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=39.77 E-value=3e+02 Score=32.89 Aligned_cols=12 Identities=33% Similarity=0.423 Sum_probs=7.1
Q ss_pred ceEEEEeCeeec
Q 003366 401 GFRIIIRGKDVE 412 (826)
Q Consensus 401 rmrIiLrGkkVe 412 (826)
+=+.+|||+.|.
T Consensus 106 rs~~~iNg~~v~ 117 (563)
T TIGR00634 106 RSRAYLNGKPVS 117 (563)
T ss_pred ceEEEECCEEcc
Confidence 345567777663
No 440
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=39.60 E-value=2.3e+02 Score=35.33 Aligned_cols=51 Identities=24% Similarity=0.315 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH------HHHHHHHHHHHHhhhhhc-CCCCcc
Q 003366 773 ESLIDIFAEERDRREREEENLRKKIKD------ASDTIQDLLDKIKLLEKM-KTPSIR 823 (826)
Q Consensus 773 ~~li~~f~eer~rr~~e~~~lr~kl~~------a~~~i~~~~~~~~~~~~~-~~~~~~ 823 (826)
+.=+++|..-|.|-+.|-+-|++||+. +.+.++.|.|.|+.-..+ |-|+|.
T Consensus 593 ~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~~~s~d~~L~EElk~yK~~LkCs~Cn 650 (698)
T KOG0978|consen 593 ELELEIEKFKRKRLEEELERLKRKLERLKKEESGASADEVLAEELKEYKELLKCSVCN 650 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHhceeCCCcc
Confidence 344778888888888889999999984 235688888888755433 445554
No 441
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=39.53 E-value=1.1e+02 Score=31.97 Aligned_cols=35 Identities=31% Similarity=0.342 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHH
Q 003366 754 LEAQLKVMQQTIEEL-NKEQESLIDIFAEERDRRER 788 (826)
Q Consensus 754 l~~~~~~~~~~~~~~-~keq~~li~~f~eer~rr~~ 788 (826)
+.+.++++..+..++ .-+++++-+++-|||.|.--
T Consensus 143 ~~~~~~~v~~~~~ele~~~~~~~r~al~EERrRyc~ 178 (219)
T PF08397_consen 143 LKEALQDVTERQSELEEFEKQSLREALLEERRRYCF 178 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433333 34778899999999999864
No 442
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=39.42 E-value=1.6e+02 Score=29.14 Aligned_cols=83 Identities=19% Similarity=0.282 Sum_probs=39.0
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HH
Q 003366 722 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIK-DA 800 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~-~a 800 (826)
.|+.|++.+-+|+|=-.-+... .........+..+++.++++++++......|-+.-++ =++ .++.+++++|- +-
T Consensus 48 ~I~~lr~~G~sL~eI~~~l~~~-~~~~~~~~~~~~~~~~l~~~i~~Le~~l~~L~~~~~~-l~~--~~~~~~~~~~~~~~ 123 (134)
T cd04779 48 LIEHLKGQRLSLAEIKDQLEEV-QRSDKEQREVAQEVQLVCDQIDGLEHRLKQLKPIASQ-TDR--AQRMKMTKELSQQV 123 (134)
T ss_pred HHHHHHHCCCCHHHHHHHHHhh-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHhcCHHh
Confidence 5788888776666421111110 0000112234455555555555555444443333222 222 34455666654 66
Q ss_pred HHHHHHHH
Q 003366 801 SDTIQDLL 808 (826)
Q Consensus 801 ~~~i~~~~ 808 (826)
.-+||-|+
T Consensus 124 ~~~~~~~~ 131 (134)
T cd04779 124 LTLIQSLT 131 (134)
T ss_pred HHHHHHHH
Confidence 66777664
No 443
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=39.36 E-value=1.7e+02 Score=38.39 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003366 756 AQLKVMQQTIEELNKEQESLIDIFAEERD 784 (826)
Q Consensus 756 ~~~~~~~~~~~~~~keq~~li~~f~eer~ 784 (826)
.+.++|+++++ --.++..+.+-+.|.|-
T Consensus 1654 ~~A~~a~q~~~-~lq~~~~~~~~l~~~r~ 1681 (1758)
T KOG0994|consen 1654 EQALSAEQGLE-ILQKYYELVDRLLEKRM 1681 (1758)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 34466677777 33456666777766554
No 444
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=39.29 E-value=2.6e+02 Score=34.43 Aligned_cols=16 Identities=6% Similarity=0.185 Sum_probs=6.5
Q ss_pred cHHHHHHHHHHHHHHH
Q 003366 753 SLEAQLKVMQQTIEEL 768 (826)
Q Consensus 753 ~l~~~~~~~~~~~~~~ 768 (826)
+|+.++.++++++..+
T Consensus 356 ~L~~~l~~~~~~~~~~ 371 (754)
T TIGR01005 356 QLVSDVNQLKAASAQA 371 (754)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 3444444444444333
No 445
>PRK14155 heat shock protein GrpE; Provisional
Probab=39.28 E-value=1.7e+02 Score=31.21 Aligned_cols=12 Identities=8% Similarity=0.252 Sum_probs=4.6
Q ss_pred hHHHHHHHHhHH
Q 003366 731 HELKKRLEKKEG 742 (826)
Q Consensus 731 ~~~~~~~~~~~~ 742 (826)
.+|.++|.++++
T Consensus 16 ~~l~~~l~~le~ 27 (208)
T PRK14155 16 DDAAQEIEALKA 27 (208)
T ss_pred cchHHHHHHHHH
Confidence 334444433333
No 446
>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown.; PDB: 4AJ5_G.
Probab=39.14 E-value=73 Score=34.44 Aligned_cols=53 Identities=26% Similarity=0.354 Sum_probs=40.1
Q ss_pred ccccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHH
Q 003366 716 DCSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEEL 768 (826)
Q Consensus 716 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~ 768 (826)
++.+.++|..+.++...+.+.|.+.+..+++|.+.+.+|.+-.+-++.+.+.+
T Consensus 17 ~~~~~~~L~~i~~~~~~i~~~l~~~~~~l~~~~~~~~~lk~l~~~~~~~~~~l 69 (243)
T PF07160_consen 17 DPNLKDTLSKIDQEVSAIEELLNDIEQELQREEEALPKLKELMESSEEQQKKL 69 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667789999999999999999999999888876666665555555544444
No 447
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=39.09 E-value=3.3e+02 Score=25.42 Aligned_cols=77 Identities=26% Similarity=0.363 Sum_probs=34.4
Q ss_pred HHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 003366 736 RLEKKEGELQEERERCRSLEAQLKVMQQTIEELNK------------------EQESLIDIFAEERDRREREEENLRKKI 797 (826)
Q Consensus 736 ~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~k------------------eq~~li~~f~eer~rr~~e~~~lr~kl 797 (826)
.++.+++.++.-......|+.++.+...-++|+.. ..+.+++.+.+....=+.+.+.|.+++
T Consensus 7 ~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~ 86 (105)
T cd00632 7 QLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQE 86 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445555555544444444432 122333344444444444444444444
Q ss_pred HHHHHHHHHHHHHHh
Q 003366 798 KDASDTIQDLLDKIK 812 (826)
Q Consensus 798 ~~a~~~i~~~~~~~~ 812 (826)
++-...+++|-.+|+
T Consensus 87 ~~l~~~~~elk~~l~ 101 (105)
T cd00632 87 EDLQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444455544444
No 448
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=39.07 E-value=4e+02 Score=26.43 Aligned_cols=47 Identities=23% Similarity=0.292 Sum_probs=28.9
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 733 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIF 779 (826)
Q Consensus 733 ~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f 779 (826)
|.+|=.+..++|..=-+..+..+..+++++++|+.+.+|-..+|+--
T Consensus 31 l~~R~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~~A~~ea~~ii~~A 77 (159)
T PRK09173 31 LDARADRIKNELAEARRLREEAQQLLAEYQRKRKEAEKEAADIVAAA 77 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44554455554444445566666667777777777777777666543
No 449
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=39.03 E-value=2.6e+02 Score=31.74 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=12.1
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHH
Q 003366 733 LKKRLEKKEGELQEERERCRSLEAQ 757 (826)
Q Consensus 733 ~~~~~~~~~~~~~~e~~~~~~l~~~ 757 (826)
.+++|.+-|++=+.+..+|+....+
T Consensus 118 te~~l~~y~~~n~~~I~~n~~~~~~ 142 (309)
T TIGR00570 118 TKKKIETYQKENKDVIQKNKEKSTR 142 (309)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 4455555555544444444444333
No 450
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=38.86 E-value=1.2e+02 Score=35.25 Aligned_cols=28 Identities=18% Similarity=0.400 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 003366 771 EQESLIDIFAEERDRREREEENLRKKIK 798 (826)
Q Consensus 771 eq~~li~~f~eer~rr~~e~~~lr~kl~ 798 (826)
++...+..+.+.+..-.++.+.|..+|+
T Consensus 372 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 399 (451)
T PF03961_consen 372 EKKEQLKKLKEKKKELKEELKELKEELK 399 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555444445555555444
No 451
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=38.73 E-value=3.9e+02 Score=26.25 Aligned_cols=69 Identities=17% Similarity=0.309 Sum_probs=36.5
Q ss_pred hhhhhhhHHHHHHHHhHHhHHHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 003366 725 QLKQENHELKKRLEKKEGELQEER----ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENL 793 (826)
Q Consensus 725 ~~~~e~~~~~~~~~~~~~~~~~e~----~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~l 793 (826)
+.++++.+.+|-|......+..+. .....|+++++++++++..+.....+|-.-+..+...-..|.+.+
T Consensus 45 ~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~ 117 (151)
T PF11559_consen 45 QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEEL 117 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566555555554444444443 445566666666666666555555555544444444444444433
No 452
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=38.72 E-value=1e+02 Score=35.20 Aligned_cols=12 Identities=33% Similarity=0.562 Sum_probs=0.4
Q ss_pred hhhhhhhhhHHH
Q 003366 723 LGQLKQENHELK 734 (826)
Q Consensus 723 ~~~~~~e~~~~~ 734 (826)
++.|++|...+|
T Consensus 107 ~~elkkEie~IK 118 (370)
T PF02994_consen 107 IKELKKEIENIK 118 (370)
T ss_dssp -----------H
T ss_pred HHHHHHHHHHHh
Confidence 344444444444
No 453
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=38.68 E-value=1.7e+02 Score=33.82 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003366 789 EEENLRKKIKDASDTIQDLLDKIKLL 814 (826)
Q Consensus 789 e~~~lr~kl~~a~~~i~~~~~~~~~~ 814 (826)
+-..|..+++++...+.+++..|=-+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~lPN~ 109 (418)
T TIGR00414 84 ELTELSAALKALEAELQDKLLSIPNI 109 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44556666666666666666655433
No 454
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.51 E-value=2.2e+02 Score=36.19 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=9.5
Q ss_pred HHHHHHHH-HHHHHhhcccc
Q 003366 516 RLEARLIQ-MQKDYWNNNCH 534 (826)
Q Consensus 516 rLe~~L~q-m~~~YW~~~~~ 534 (826)
|..++++= |+--||-.+|.
T Consensus 494 r~qt~vglLmlL~~WL~~cp 513 (970)
T KOG0946|consen 494 RHQTRVGLLMLLITWLYGCP 513 (970)
T ss_pred hHHHHHHHHHHHHHHHcCCc
Confidence 33444442 44467765554
No 455
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=38.51 E-value=3.8e+02 Score=31.61 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=11.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 753 SLEAQLKVMQQTIEELNKEQESLI 776 (826)
Q Consensus 753 ~l~~~~~~~~~~~~~~~keq~~li 776 (826)
.|+.+++.-|++++|+.....+|-
T Consensus 214 ~l~~~l~~~q~~l~eL~~~~~~L~ 237 (420)
T COG4942 214 QLNSELSADQKKLEELRANESRLK 237 (420)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344444555556665554444443
No 456
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=38.45 E-value=4.3e+02 Score=26.66 Aligned_cols=37 Identities=27% Similarity=0.296 Sum_probs=17.0
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 003366 733 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELN 769 (826)
Q Consensus 733 ~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~ 769 (826)
|.+|-.+..++|..=-...+.+..-+++++++|+++.
T Consensus 35 l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar 71 (161)
T COG0711 35 LDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAR 71 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444432222233333444455666666666
No 457
>PRK14151 heat shock protein GrpE; Provisional
Probab=38.44 E-value=3.6e+02 Score=28.02 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=23.9
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 003366 750 RCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRK 795 (826)
Q Consensus 750 ~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~ 795 (826)
.-..|+++++++++++++++...-.+.-=|---|.|-.+|.+.+++
T Consensus 21 ~~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~ 66 (176)
T PRK14151 21 AGDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHK 66 (176)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555444434444455556666666666554
No 458
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=38.37 E-value=3.8e+02 Score=26.00 Aligned_cols=38 Identities=18% Similarity=0.422 Sum_probs=15.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003366 776 IDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKL 813 (826)
Q Consensus 776 i~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~ 813 (826)
|++|....+.=+..-+.|.+.|.+..+.++.+..++..
T Consensus 96 ~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 96 IEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQ 133 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444444444444443
No 459
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=38.33 E-value=3.3e+02 Score=27.90 Aligned_cols=94 Identities=16% Similarity=0.211 Sum_probs=0.0
Q ss_pred cchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 003366 719 LGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIK 798 (826)
Q Consensus 719 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~ 798 (826)
|.+-...-++......++|...|..+++|.....+.-++|+.-.++|+...+..-..+.-+.|.-..--.|...|..+-.
T Consensus 62 L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~ 141 (158)
T PF09744_consen 62 LETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERER 141 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHh
Q 003366 799 DASDTIQDLLDKIK 812 (826)
Q Consensus 799 ~a~~~i~~~~~~~~ 812 (826)
+-..+..+++++.+
T Consensus 142 e~l~~~~e~ver~k 155 (158)
T PF09744_consen 142 ELLRKLKEHVERQK 155 (158)
T ss_pred HHHHHHHHHHHHHH
No 460
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.30 E-value=1.7e+02 Score=34.76 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=18.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHH
Q 003366 776 IDIFAEERDRREREEENLRKKIK 798 (826)
Q Consensus 776 i~~f~eer~rr~~e~~~lr~kl~ 798 (826)
+...+||-.++..+-++||++|+
T Consensus 354 L~a~~eei~~~eel~~~Lrsele 376 (521)
T KOG1937|consen 354 LEAVDEEIESNEELAEKLRSELE 376 (521)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHh
Confidence 34568888899999999999886
No 461
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=38.15 E-value=1.7e+02 Score=35.89 Aligned_cols=21 Identities=19% Similarity=0.408 Sum_probs=12.1
Q ss_pred hhcHHHHHHHHHHHHHHHHHH
Q 003366 751 CRSLEAQLKVMQQTIEELNKE 771 (826)
Q Consensus 751 ~~~l~~~~~~~~~~~~~~~ke 771 (826)
+...+++|.+++++++++..+
T Consensus 117 ~~EqEerL~ELE~~le~~~e~ 137 (617)
T PF15070_consen 117 NQEQEERLAELEEELERLQEQ 137 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666655443
No 462
>PF14772 NYD-SP28: Sperm tail
Probab=38.12 E-value=3.4e+02 Score=25.29 Aligned_cols=42 Identities=14% Similarity=0.290 Sum_probs=36.9
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 003366 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREE 790 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~ 790 (826)
.++..|-.+|+..+++.+++-..-.+||.-|.+|=...|.+=
T Consensus 51 ~~~~eL~~~ie~q~~~~e~ii~~Kd~lI~~L~~eL~~~deqy 92 (104)
T PF14772_consen 51 KKPQELRKEIEEQKQACERIIDRKDALIKELQQELKEADEQY 92 (104)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999998877666543
No 463
>PF13166 AAA_13: AAA domain
Probab=38.09 E-value=3.8e+02 Score=32.48 Aligned_cols=19 Identities=16% Similarity=0.052 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 003366 512 TVLARLEARLIQMQKDYWN 530 (826)
Q Consensus 512 ~l~~rLe~~L~qm~~~YW~ 530 (826)
..|+.+...|.+....|..
T Consensus 280 ~~~~~~~~~l~~~~~~~~~ 298 (712)
T PF13166_consen 280 EEYEKLIEELEKAIKKLEK 298 (712)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566666667766666664
No 464
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=37.97 E-value=2.7e+02 Score=31.38 Aligned_cols=64 Identities=22% Similarity=0.239 Sum_probs=35.8
Q ss_pred hhhhhhhhhhHHHHHHHHhHHh---H-------HHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003366 722 NLGQLKQENHELKKRLEKKEGE---L-------QEER----ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDR 785 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~~~---~-------~~e~----~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~r 785 (826)
.+..||.+..++.|+..|.==+ | .-+. |++-.|++.+-.+++++++..++-+.+...|..=|..
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e 155 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREE 155 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777653222 1 1111 5555666666666666666666655555555444433
No 465
>PF06273 eIF-4B: Plant specific eukaryotic initiation factor 4B; InterPro: IPR010433 This family consists of several plant specific eukaryotic initiation factor 4B proteins.
Probab=37.85 E-value=42 Score=39.73 Aligned_cols=51 Identities=27% Similarity=0.416 Sum_probs=33.3
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHH--HhhhcHHHHHHHHHHHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEER--ERCRSLEAQLKVMQQTIEELNKEQE 773 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~--~~~~~l~~~~~~~~~~~~~~~keq~ 773 (826)
-+.||.|+..||++|.+.+++.++.. ..-+.|.+.|.+.+++||.|..|.+
T Consensus 368 ek~lKeeI~~lk~~l~~~~~~~~~~~~~~~~~~~~e~i~~kE~eLe~L~~elD 420 (492)
T PF06273_consen 368 EKFLKEEINALKERLEEEEASSEKSKGSGEEESLREEISQKEKELEKLTRELD 420 (492)
T ss_pred chhhhhhHHHHHHHHHhhhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhh
Confidence 46788888999999988888664443 1225566666666666666655543
No 466
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=37.81 E-value=2.2e+02 Score=34.96 Aligned_cols=64 Identities=9% Similarity=0.231 Sum_probs=32.7
Q ss_pred HhhhcHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 003366 749 ERCRSLEAQLKVMQQTIEEL-----NKEQESLIDIFAEERDRRE-REEENLRKKIKDASDTIQDLLDKIK 812 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~-----~keq~~li~~f~eer~rr~-~e~~~lr~kl~~a~~~i~~~~~~~~ 812 (826)
+....||.-+..++++|+++ ..+.+.|.+...+.++--+ ...+.+++|+++..+.++.|..++.
T Consensus 568 eakN~lEs~iy~~r~~l~e~~~~~s~~ere~i~~~l~~~~~WL~~~d~~~i~~k~~eL~~~l~~l~~k~y 637 (663)
T PTZ00400 568 DAKNEAETLIYSVEKQLSDLKDKISDADKDELKQKITKLRSTLSSEDVDSIKDKTKQLQEASWKISQQAY 637 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556777777777777531 2222233222222222111 1235567777776666777776653
No 467
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=37.80 E-value=1.4e+02 Score=33.65 Aligned_cols=50 Identities=24% Similarity=0.331 Sum_probs=40.2
Q ss_pred hhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHH
Q 003366 721 ANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNK 770 (826)
Q Consensus 721 ~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~-~~~~~~k 770 (826)
.-+|.+++--.+|.-.|..+|..|..|+||-|.=..++.++.| +.|||.+
T Consensus 182 ~S~k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmeiL~aRqkkAeeLkr 232 (302)
T PF07139_consen 182 SSIKKIKQTFAELQSCLMDREVALLAEMDKVKAEAMEILDARQKKAEELKR 232 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777788899999999999999999999988877777766 6666654
No 468
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=37.75 E-value=87 Score=28.94 Aligned_cols=46 Identities=28% Similarity=0.391 Sum_probs=20.3
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHH--HhhhcHHHHHHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEER--ERCRSLEAQLKVMQQTIEEL 768 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~--~~~~~l~~~~~~~~~~~~~~ 768 (826)
+..|+.++..|...+..+.|+=...+ +-...||.+|+.+-.++-..
T Consensus 21 ~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~r 68 (100)
T PF01486_consen 21 IAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSR 68 (100)
T ss_pred HHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHH
Confidence 44455555555544444444311111 33344555555554444433
No 469
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=37.74 E-value=47 Score=38.04 Aligned_cols=76 Identities=24% Similarity=0.337 Sum_probs=49.5
Q ss_pred HHHHHHhccchhhhhC--CCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCcccc-
Q 003366 155 GAFAELLDNSLDEVCN--GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT- 231 (826)
Q Consensus 155 gAIAELIDNAiDA~~~--gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfKs- 231 (826)
.|+--.++-|+.-+.. +|+.|.|.+. ..++.-.+.|.|||.|.+..++..-+ .|+|+..
T Consensus 358 talyRv~QEaltNIErHa~Atrv~ill~--~~~d~vql~vrDnG~GF~~~~~~~~~----------------~GiGLRNM 419 (459)
T COG4564 358 TALYRVVQEALTNIERHAGATRVTILLQ--QMGDMVQLMVRDNGVGFSVKEALQKR----------------HGIGLRNM 419 (459)
T ss_pred HHHHHHHHHHHHHHHhhcCCeEEEEEec--cCCcceEEEEecCCCCccchhhccCc----------------cccccccH
Confidence 3444444444433322 6887777774 34567789999999999988776422 4778763
Q ss_pred -ccc-ccCCeEEEEeeecC
Q 003366 232 -STM-RLGADVIVFSCCCG 248 (826)
Q Consensus 232 -Asm-rLG~~v~V~SK~~g 248 (826)
--| .+|-.++|.|-..|
T Consensus 420 rERma~~GG~~~v~s~p~G 438 (459)
T COG4564 420 RERMAHFGGELEVESSPQG 438 (459)
T ss_pred HHHHHHhCceEEEEecCCC
Confidence 111 47889999997765
No 470
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.72 E-value=4.3e+02 Score=32.30 Aligned_cols=96 Identities=25% Similarity=0.405 Sum_probs=54.0
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHH----------HHH-----------HhhhcHHHHHHHHHHHHHHHH----HHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQ----------EER-----------ERCRSLEAQLKVMQQTIEELN----KEQESLID 777 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~----------~e~-----------~~~~~l~~~~~~~~~~~~~~~----keq~~li~ 777 (826)
|.+.+.||..|||.+.-+++++. .+. -+.|+|++-|+.-..++-.|+ |.-+.+-|
T Consensus 333 Ie~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~dd 412 (654)
T KOG4809|consen 333 IESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDD 412 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 88999999999998887766541 111 233444444332221221111 11222222
Q ss_pred H-----HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 003366 778 I-----FAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMK 818 (826)
Q Consensus 778 ~-----f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~~~~ 818 (826)
+ |++-|.--+.|---.|+-++-|-...+.||+-++..+..|
T Consensus 413 ar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneK 458 (654)
T KOG4809|consen 413 ARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEK 458 (654)
T ss_pred hhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 2 5555555555655666777777777888887777665444
No 471
>PLN02939 transferase, transferring glycosyl groups
Probab=37.43 E-value=2.6e+02 Score=36.16 Aligned_cols=25 Identities=36% Similarity=0.421 Sum_probs=18.5
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhH
Q 003366 720 GANLGQLKQENHELKKRLEKKEGEL 744 (826)
Q Consensus 720 ~~~~~~~~~e~~~~~~~~~~~~~~~ 744 (826)
..-+.-||+||-.||+-++-+...|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (977)
T PLN02939 225 SKELDVLKEENMLLKDDIQFLKAEL 249 (977)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3347788999999998877665553
No 472
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=37.34 E-value=4.2e+02 Score=27.19 Aligned_cols=83 Identities=16% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHH--HHHHHHHhh
Q 003366 737 LEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEE-RDRREREEENLRKKIKDASDTI--QDLLDKIKL 813 (826)
Q Consensus 737 ~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~ee-r~rr~~e~~~lr~kl~~a~~~i--~~~~~~~~~ 813 (826)
|.+++..+...++.-..+.++.+++++..|+.-++...=.+-...| |++-..|-+.-|++++.-...+ |+.-+-...
T Consensus 39 Le~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~~~~~~~~~~~~~ 118 (155)
T PRK06569 39 FNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKNSINQNIEDINLA 118 (155)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhcCC
Q 003366 814 LEKMKT 819 (826)
Q Consensus 814 ~~~~~~ 819 (826)
.+.+|+
T Consensus 119 ~~~~~~ 124 (155)
T PRK06569 119 AKQFRT 124 (155)
T ss_pred HHHHHH
No 473
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=37.31 E-value=13 Score=35.18 Aligned_cols=45 Identities=38% Similarity=0.503 Sum_probs=19.3
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHH
Q 003366 720 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQT 764 (826)
Q Consensus 720 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~ 764 (826)
..-+..|..||.+|+.++..++..|..-.+....|...|..||+.
T Consensus 31 ~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~ 75 (131)
T PF05103_consen 31 AEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQET 75 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCT---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhh
Confidence 334677889999999999888887755545555555555445543
No 474
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=37.14 E-value=1.2e+02 Score=34.20 Aligned_cols=45 Identities=22% Similarity=0.249 Sum_probs=19.0
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEE 767 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~ 767 (826)
+..+++|.++|.+--...++++....+..+.|++.++.+++..+.
T Consensus 8 ~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 52 (378)
T TIGR01554 8 REEIVAEIRSLLDKAEKLEKELTAAALEKEELETDVEKLKEEIKL 52 (378)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555522233333333333333444444444443333
No 475
>PRK14147 heat shock protein GrpE; Provisional
Probab=37.07 E-value=2e+02 Score=29.73 Aligned_cols=59 Identities=19% Similarity=0.295 Sum_probs=34.4
Q ss_pred ccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 003366 718 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESLIDIF 779 (826)
Q Consensus 718 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~-~~~~~~keq~~li~~f 779 (826)
.+.+-|..|++|..+|++++.+..++++.=+ |-++.+.+++.+ -++.+-++---++|-|
T Consensus 22 ~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~r---kR~~kE~e~~~~~a~~~~~~~lLpv~Dnl 81 (172)
T PRK14147 22 PLKAEVESLRSEIALVKADALRERADLENQR---KRIARDVEQARKFANEKLLGELLPVFDSL 81 (172)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 3555678888888888888887776664332 233334444433 4444445444555555
No 476
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=36.91 E-value=2.5e+02 Score=32.58 Aligned_cols=101 Identities=15% Similarity=0.213 Sum_probs=0.0
Q ss_pred cchhhhhhhhhhhHHHHHHHHhHH------------------------------------hHHHHHHhhhcHHHHHHHHH
Q 003366 719 LGANLGQLKQENHELKKRLEKKEG------------------------------------ELQEERERCRSLEAQLKVMQ 762 (826)
Q Consensus 719 ~~~~~~~~~~e~~~~~~~~~~~~~------------------------------------~~~~e~~~~~~l~~~~~~~~ 762 (826)
+..-+.+++++...++..+...+. .+..=......|+.++.+++
T Consensus 177 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~~~ 256 (457)
T TIGR01000 177 LDQQISKTDQKLQDYQALKNAISNGTKVANFNPYQSLYENYQAQLKSASDKDQKNQVKSTILATIQQQIDQLQKSIASYQ 256 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH---------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 003366 763 QTIEELNKE---------QESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMKTP 820 (826)
Q Consensus 763 ~~~~~~~ke---------q~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~~~~~~ 820 (826)
.++.++... +..+..++.+.+..-.+|-..++..|..|...+..+-+++.... .+.|
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~~~~-I~AP 322 (457)
T TIGR01000 257 VQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKEDSQKGV-IKAP 322 (457)
T ss_pred HHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCE-EECC
No 477
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=36.81 E-value=4.2e+02 Score=28.14 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003366 788 REEENLRKKIKDASDTI 804 (826)
Q Consensus 788 ~e~~~lr~kl~~a~~~i 804 (826)
.|.|.++.||+.|-...
T Consensus 153 ke~eK~~~K~~k~~~~~ 169 (239)
T cd07647 153 KEAEKLKKKAAQCKTSA 169 (239)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46678888888764433
No 478
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=36.59 E-value=1.7e+02 Score=27.16 Aligned_cols=65 Identities=23% Similarity=0.425 Sum_probs=29.4
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003366 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLL 814 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~ 814 (826)
+....|-.+...+++++++++.++-.+=.-++.-.... .+.+.|....++....|.+|-+++..+
T Consensus 29 d~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~-~~~~~l~~e~~~lk~~i~~le~~~~~~ 93 (108)
T PF02403_consen 29 DEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG-EDAEELKAEVKELKEEIKELEEQLKEL 93 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT-CCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445555555555555444444444333222 233444444444444454444444443
No 479
>PRK14162 heat shock protein GrpE; Provisional
Probab=36.54 E-value=2.3e+02 Score=30.03 Aligned_cols=87 Identities=16% Similarity=0.267 Sum_probs=44.7
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHH
Q 003366 720 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESLIDIFAEERDRR----EREEENLR 794 (826)
Q Consensus 720 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~-~~~~~~keq~~li~~f~eer~rr----~~e~~~lr 794 (826)
..-|..|++++.+|++++++..++++-= +|-.+.+.+++.+ -++.+-++---++|-|. |... +...++|.
T Consensus 45 ~~~l~~l~~e~~elkd~~lR~~AEfeN~---rkR~~kE~e~~~~~a~~~~~~~LLpV~DnLe--rAl~~~~~~~~~~~l~ 119 (194)
T PRK14162 45 EKEIADLKAKNKDLEDKYLRSQAEIQNM---QNRYAKERAQLIKYESQSLAKDVLPAMDNLE--RALAVKADDEAAKQLK 119 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHhHHH--HHHhccccchhHHHHH
Confidence 3346667777777777777666665432 2223333444433 55555666556666663 3321 12224455
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003366 795 KKIKDASDTIQDLLDKI 811 (826)
Q Consensus 795 ~kl~~a~~~i~~~~~~~ 811 (826)
+=++--.+.+..+|++.
T Consensus 120 ~Gvemi~k~l~~vL~~~ 136 (194)
T PRK14162 120 KGVQMTLDHLVKALKDH 136 (194)
T ss_pred HHHHHHHHHHHHHHHHC
Confidence 55554445555555443
No 480
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=36.54 E-value=3.2e+02 Score=29.46 Aligned_cols=44 Identities=25% Similarity=0.325 Sum_probs=23.2
Q ss_pred hhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHH
Q 003366 724 GQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEE 767 (826)
Q Consensus 724 ~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~ 767 (826)
+.|.+...+.+.-|.+....+-+=+..-|.|+.++.+++...+.
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k 70 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEK 70 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566666656555555444444455555555555444433
No 481
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=36.42 E-value=2.4e+02 Score=31.70 Aligned_cols=75 Identities=29% Similarity=0.386 Sum_probs=0.0
Q ss_pred HHHHHhHHhH-----------------------------HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003366 735 KRLEKKEGEL-----------------------------QEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDR 785 (826)
Q Consensus 735 ~~~~~~~~~~-----------------------------~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~r 785 (826)
|||..-|++| |-|+.+.+.||.+.++-.+.+||+...|.+ |||.+
T Consensus 288 erlrqeeeelnikk~e~~kikqe~ddkdk~~ed~e~kkrqlerqekqeleqmaeeekkr~eeaeerqra------eekeq 361 (445)
T KOG2891|consen 288 ERLRQEEEELNIKKAEACKIKQEFDDKDKHLEDAEIKKRQLERQEKQELEQMAEEEKKREEEAEERQRA------EEKEQ 361 (445)
T ss_pred HHHhhhHhhhhhhHHHhhchhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------HHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003366 786 REREEENLRKKIKDASDTIQDLLDKIKLLE 815 (826)
Q Consensus 786 r~~e~~~lr~kl~~a~~~i~~~~~~~~~~~ 815 (826)
.+.|+-.-..|-.+...-..-+.|++.+-|
T Consensus 362 ~eaee~~ra~kr~egvkllkf~fekieare 391 (445)
T KOG2891|consen 362 KEAEELERARKREEGVKLLKFEFEKIEARE 391 (445)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
No 482
>PRK12705 hypothetical protein; Provisional
Probab=36.31 E-value=3.5e+02 Score=32.57 Aligned_cols=8 Identities=25% Similarity=0.335 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 003366 764 TIEELNKE 771 (826)
Q Consensus 764 ~~~~~~ke 771 (826)
+.+.+++.
T Consensus 96 ~~~~l~~~ 103 (508)
T PRK12705 96 RAEKLDNL 103 (508)
T ss_pred HHHHHHHH
Confidence 33333333
No 483
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=36.23 E-value=1.8e+02 Score=34.61 Aligned_cols=59 Identities=27% Similarity=0.374 Sum_probs=28.5
Q ss_pred ccccchhhhhhhhhhhHHHHHHHHhHHhHHHHH----HhhhcHHHHHHHHHH-HHHHHHHHHHHH
Q 003366 716 DCSLGANLGQLKQENHELKKRLEKKEGELQEER----ERCRSLEAQLKVMQQ-TIEELNKEQESL 775 (826)
Q Consensus 716 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~----~~~~~l~~~~~~~~~-~~~~~~keq~~l 775 (826)
..-|.|++.++|+-..+|. .|.+--+.|..|- .+...+..|++.+-+ .-.++.+||+.|
T Consensus 58 ~DTlrTlva~~k~~r~~~~-~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql 121 (472)
T TIGR03752 58 ADTLRTLVAEVKELRKRLA-KLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQL 121 (472)
T ss_pred cchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3345677666655444442 2333333333333 333445555544443 345566666665
No 484
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=36.17 E-value=4.4e+02 Score=26.81 Aligned_cols=25 Identities=16% Similarity=0.464 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 003366 791 ENLRKKIKDASDTIQDLLDKIKLLE 815 (826)
Q Consensus 791 ~~lr~kl~~a~~~i~~~~~~~~~~~ 815 (826)
..+...++.|-..+++.+++|.+..
T Consensus 141 ~~~~~~~~~~~~~l~~~lekL~~fd 165 (204)
T PF04740_consen 141 SSFIDSLEKAKKKLQETLEKLRAFD 165 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666554
No 485
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=36.15 E-value=1.1e+02 Score=26.75 Aligned_cols=41 Identities=22% Similarity=0.413 Sum_probs=36.8
Q ss_pred hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 003366 731 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKE 771 (826)
Q Consensus 731 ~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~ke 771 (826)
.++.+||..+|..++.=.+.|+...+.+.-++.-+|++-|-
T Consensus 4 k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~ 44 (57)
T PF02346_consen 4 KDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKY 44 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 46779999999999999999999999999999999998764
No 486
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=35.96 E-value=4.7e+02 Score=26.34 Aligned_cols=50 Identities=18% Similarity=0.199 Sum_probs=31.8
Q ss_pred hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 731 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFA 780 (826)
Q Consensus 731 ~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~ 780 (826)
.-|.+|=.+...+|..=-..++..+..+++++++|+.+.+|-..+|+---
T Consensus 37 ~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A~ 86 (167)
T PRK14475 37 GALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAAAK 86 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555444456666777777888888888777766665443
No 487
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=35.89 E-value=12 Score=45.61 Aligned_cols=54 Identities=33% Similarity=0.417 Sum_probs=0.0
Q ss_pred chhhhhhhhhhhHHHHHHHHhHH----hHHHHH----HhhhcHHHHHHHHHHHHHHHHHHHH
Q 003366 720 GANLGQLKQENHELKKRLEKKEG----ELQEER----ERCRSLEAQLKVMQQTIEELNKEQE 773 (826)
Q Consensus 720 ~~~~~~~~~e~~~~~~~~~~~~~----~~~~e~----~~~~~l~~~~~~~~~~~~~~~keq~ 773 (826)
..-|..|+.||..|+.++...+. .|+.++ ..+..|+++...+.+++.++..+-+
T Consensus 458 ~erl~rLe~ENk~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle 519 (713)
T PF05622_consen 458 RERLLRLEHENKRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEENREANEKILELQSQLE 519 (713)
T ss_dssp --------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466788999998866544422 133333 3344455544444444444433333
No 488
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=35.81 E-value=3e+02 Score=31.74 Aligned_cols=18 Identities=11% Similarity=0.283 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003366 764 TIEELNKEQESLIDIFAE 781 (826)
Q Consensus 764 ~~~~~~keq~~li~~f~e 781 (826)
+++.+.++-+.+.+++.+
T Consensus 53 ~~~~~~~~~~~~~~l~~~ 70 (359)
T PRK00591 53 EYKQAQEDLEEAKEMLEE 70 (359)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 455556666667777654
No 489
>PRK10698 phage shock protein PspA; Provisional
Probab=35.75 E-value=5.4e+02 Score=27.46 Aligned_cols=17 Identities=6% Similarity=0.134 Sum_probs=7.1
Q ss_pred HhhhcHHHHHHHHHHHH
Q 003366 749 ERCRSLEAQLKVMQQTI 765 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~ 765 (826)
-..|.|+.++.+++..+
T Consensus 52 A~~k~~er~~~~~~~~~ 68 (222)
T PRK10698 52 AEKKQLTRRIEQAEAQQ 68 (222)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 490
>PRK14139 heat shock protein GrpE; Provisional
Probab=35.75 E-value=2.4e+02 Score=29.68 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=15.6
Q ss_pred hhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH
Q 003366 730 NHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ 763 (826)
Q Consensus 730 ~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~ 763 (826)
..+|+++|..+++.+..-.++..-+.+.+++.++
T Consensus 34 ~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rK 67 (185)
T PRK14139 34 APALEAELAEAEAKAAELQDSFLRAKAETENVRR 67 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333444455555555544
No 491
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=35.74 E-value=3.2e+02 Score=29.85 Aligned_cols=46 Identities=20% Similarity=0.354 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHH--HHHHHHHHHHHHHHHHHHHHHhh
Q 003366 768 LNKEQESLIDIFAEERDRREREE--ENLRKKIKDASDTIQDLLDKIKL 813 (826)
Q Consensus 768 ~~keq~~li~~f~eer~rr~~e~--~~lr~kl~~a~~~i~~~~~~~~~ 813 (826)
..+.|-..+++..++=++=+-|+ +-+++-++++.+..+..++.+++
T Consensus 91 ~~k~~~dF~~~Lq~~Lk~V~tde~k~~~~~ei~k~r~e~~~ml~evK~ 138 (230)
T PF03904_consen 91 TEKVHNDFQDILQDELKDVDTDELKNIAQNEIKKVREENKSMLQEVKQ 138 (230)
T ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666655544442 11222234444444445554443
No 492
>PRK14147 heat shock protein GrpE; Provisional
Probab=35.72 E-value=3.7e+02 Score=27.79 Aligned_cols=90 Identities=14% Similarity=0.193 Sum_probs=0.0
Q ss_pred ccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 003366 718 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESLIDIFAEERDRREREEENLRKK 796 (826)
Q Consensus 718 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~-~~~~~~keq~~li~~f~eer~rr~~e~~~lr~k 796 (826)
.+.+-|..|++|..+|++++.+..++++ .=+|-++.+.+++.+ -++.+-++---++|-|.--...-..+..+|..-
T Consensus 22 ~l~~~l~~l~~e~~elkd~~lR~~Ad~e---N~rkR~~kE~e~~~~~a~~~~~~~lLpv~DnlerAl~~~~~~~~~l~~G 98 (172)
T PRK14147 22 PLKAEVESLRSEIALVKADALRERADLE---NQRKRIARDVEQARKFANEKLLGELLPVFDSLDAGLTAAGTEPSPLRDG 98 (172)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccchHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 003366 797 IKDASDTIQDLLDK 810 (826)
Q Consensus 797 l~~a~~~i~~~~~~ 810 (826)
++--.+.+..+|++
T Consensus 99 v~mi~k~l~~~L~~ 112 (172)
T PRK14147 99 LELTYKQLLKVAAD 112 (172)
T ss_pred HHHHHHHHHHHHHH
No 493
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=35.69 E-value=1.9e+02 Score=30.72 Aligned_cols=68 Identities=15% Similarity=0.227 Sum_probs=0.0
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 003366 752 RSLEAQLKVMQQTIEELNKEQESLIDIF------AEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMKTP 820 (826)
Q Consensus 752 ~~l~~~~~~~~~~~~~~~keq~~li~~f------~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~~~~~~ 820 (826)
+.++.+++.++.+++.+.++-+.+-..| .++.+....+-++++.+|+.+-..++.+..+++.+. .+.|
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~-i~AP 140 (322)
T TIGR01730 67 QAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVEAAQADLEAAKASLASAQLNLRYTE-IRAP 140 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCE-EECC
No 494
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=35.55 E-value=2.8e+02 Score=32.76 Aligned_cols=95 Identities=20% Similarity=0.273 Sum_probs=0.0
Q ss_pred ccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 003366 718 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKI 797 (826)
Q Consensus 718 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl 797 (826)
++....+||-..-..+.+.|.+.+++-..+.+--|.||++.++++++|-+.++.|.+|.--|.+-|.---.|.-.--+-|
T Consensus 142 slle~~~q~da~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l~al 221 (446)
T KOG4438|consen 142 SLLELRKQLDAKYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKILNAL 221 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHh
Q 003366 798 KDASDTIQDLLDKIK 812 (826)
Q Consensus 798 ~~a~~~i~~~~~~~~ 812 (826)
+.-..|+++--+.|+
T Consensus 222 ~llv~tLee~~~~Lk 236 (446)
T KOG4438|consen 222 KLLVVTLEENANCLK 236 (446)
T ss_pred HHHHHHHHHHHHHHH
No 495
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=35.55 E-value=3.5e+02 Score=31.93 Aligned_cols=82 Identities=21% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhhhHHHHHHHHHHHHHH
Q 003366 735 KRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESL--------------IDIFAEERDRREREEENLRKKIKDA 800 (826)
Q Consensus 735 ~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~l--------------i~~f~eer~rr~~e~~~lr~kl~~a 800 (826)
+++..++..|++-.+....++.++.-+++++.-+..-++.+ +.-..+--+--.++-+.|+..+.++
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREA 150 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhhh
Q 003366 801 SDTIQDLLDKIKLLEK 816 (826)
Q Consensus 801 ~~~i~~~~~~~~~~~~ 816 (826)
...|.+|-++|..++.
T Consensus 151 ~~~~~~~~~~l~~l~~ 166 (525)
T TIGR02231 151 ERRIRELEKQLSELQN 166 (525)
T ss_pred HHHHHHHHHHHHHHHH
No 496
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=35.44 E-value=44 Score=33.73 Aligned_cols=49 Identities=31% Similarity=0.433 Sum_probs=0.0
Q ss_pred hhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHH
Q 003366 724 GQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQES 774 (826)
Q Consensus 724 ~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~ 774 (826)
.+|+.|..+|++-+... +.|.|.-|--.|+-++..+..+||+++++..+
T Consensus 43 ~~l~~Ei~~l~~E~~~i--S~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~ 91 (161)
T PF04420_consen 43 RQLRKEILQLKRELNAI--SAQDEFAKWAKLNRKLDKLEEELEKLNKSLSS 91 (161)
T ss_dssp HHHHHHHHHHHHHHTTS---TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.36 E-value=3.2e+02 Score=33.63 Aligned_cols=97 Identities=21% Similarity=0.330 Sum_probs=0.0
Q ss_pred cchhhhhhhhhhhHHHHHHHHhHHh--------------------------------HHHHHHhhhcHHHHHHHHHHHH-
Q 003366 719 LGANLGQLKQENHELKKRLEKKEGE--------------------------------LQEERERCRSLEAQLKVMQQTI- 765 (826)
Q Consensus 719 ~~~~~~~~~~e~~~~~~~~~~~~~~--------------------------------~~~e~~~~~~l~~~~~~~~~~~- 765 (826)
+.|-|..|..+|.-|-.||-.|+.. +.++++++-+|.+++..+|.+.
T Consensus 344 ~~Tr~Er~Er~~D~L~rri~~~~~~~~R~~~s~A~~K~~E~K~~~~~~~~~~r~i~~~~~~~~~~~~~s~~~r~L~~~~~ 423 (852)
T KOG4787|consen 344 LNTKIERLEKTNDHLNKKIVELEADCKRGGVTSAHSKAGEFKLTPEMEKDMSKMIVTISELERKNLELTTQVKQLETKVT 423 (852)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHhhhhhcChHhHhHHHHHHHHHHHHHHhcccHHHHHHHHhhccc
Q ss_pred -------------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003366 766 -------------EELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLE 815 (826)
Q Consensus 766 -------------~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~ 815 (826)
.|+-|+|...-++=---|+---+-...|+++|+.|+.+-.=|-.+|+.++
T Consensus 424 ~~~~~~~~~~s~~~Ei~~~QA~M~E~~Dt~~~~dV~~~~sL~~~LeqAsK~CRIL~~RL~K~~ 486 (852)
T KOG4787|consen 424 PKPNFVVPSGTTTTELRKEQAQMNELKDTVFKSDVQKVISLATKLEQANKQCRILNERLNKLH 486 (852)
T ss_pred cchhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHHH
No 498
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=35.35 E-value=3.8e+02 Score=25.07 Aligned_cols=87 Identities=22% Similarity=0.357 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHH--------------------------------------
Q 003366 728 QENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELN-------------------------------------- 769 (826)
Q Consensus 728 ~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~-------------------------------------- 769 (826)
++.......|...-..++..+........+++.+...|+.+.
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~v 81 (129)
T cd00890 2 QELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYV 81 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEE
Q ss_pred -HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003366 770 -KEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLL 814 (826)
Q Consensus 770 -keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~ 814 (826)
+--+..++.+.+..+.-+.+-+.|.+.++.....|+.|...|..+
T Consensus 82 e~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 82 EKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 499
>PRK14144 heat shock protein GrpE; Provisional
Probab=35.34 E-value=1.7e+02 Score=31.16 Aligned_cols=85 Identities=28% Similarity=0.309 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHhHHhHHHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 003366 727 KQENHELKKRLEKKEGELQEER----ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASD 802 (826)
Q Consensus 727 ~~e~~~~~~~~~~~~~~~~~e~----~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~ 802 (826)
+++|..++|-+. ++.--+|- ..-..|+++++.++++++++....-.+.-=|-.=|.|-.+|.+++++ --..+
T Consensus 21 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~~--~a~~~ 96 (199)
T PRK14144 21 KVENEILEEETD--EESQHQEPALGHPSYTALEEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAHK--YGVEK 96 (199)
T ss_pred cchhhHHHhccc--cccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Q ss_pred HHHHHHHHHhhhh
Q 003366 803 TIQDLLDKIKLLE 815 (826)
Q Consensus 803 ~i~~~~~~~~~~~ 815 (826)
.+.+||.=+..++
T Consensus 97 ~~~~LLpV~DnLe 109 (199)
T PRK14144 97 LISALLPVVDSLE 109 (199)
T ss_pred HHHHHhhHHhHHH
No 500
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=35.31 E-value=2.1e+02 Score=35.60 Aligned_cols=87 Identities=25% Similarity=0.328 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhh---hHHHHHHHHHHHH-----
Q 003366 729 ENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQES--LIDIFAEERDR---REREEENLRKKIK----- 798 (826)
Q Consensus 729 e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~--li~~f~eer~r---r~~e~~~lr~kl~----- 798 (826)
|-..+++||.++-+-|.+|++.-+.-..=-+.++++++...+|... -+....+|=.. .+.|.+.||+||+
T Consensus 183 E~~d~~~RL~~l~~lL~~ele~l~l~~~I~~~v~~~~~~~qr~~~Lreqlk~i~~eLg~~~~~~~~~~~~~~k~~~~~~~ 262 (775)
T TIGR00763 183 ETVNIEKRLKKALELLKKELELLKLQNKITKKVEEKMEKTQREYYLREQLKAIKKELGIEKDDKDELEKLKEKLEELKLP 262 (775)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHhcCCC
Q ss_pred -HHHHHHHHHHHHHhhhh
Q 003366 799 -DASDTIQDLLDKIKLLE 815 (826)
Q Consensus 799 -~a~~~i~~~~~~~~~~~ 815 (826)
++...+..-+.+++...
T Consensus 263 ~~~~~~~~~e~~~~~~~~ 280 (775)
T TIGR00763 263 EEVKKVIEKELTKLSLLE 280 (775)
T ss_pred HHHHHHHHHHHHHHHcCC
Done!