Query 003366
Match_columns 826
No_of_seqs 298 out of 1506
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 22:50:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003366.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003366hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y4s_A Chaperone protein HTPG; 99.7 3.4E-16 1.2E-20 178.0 15.4 113 125-248 8-145 (559)
2 2ioq_A Chaperone protein HTPG; 99.6 3E-16 1E-20 180.4 7.7 114 124-248 7-145 (624)
3 3nmq_A Heat shock protein HSP 99.6 1.8E-16 6.1E-21 163.7 3.3 113 125-248 20-155 (239)
4 3peh_A Endoplasmin homolog; st 99.6 2.7E-16 9.3E-21 165.6 4.3 113 125-248 27-163 (281)
5 3ied_A Heat shock protein; HSP 99.6 6.8E-16 2.3E-20 161.1 4.2 110 125-245 28-197 (272)
6 1qy5_A Endoplasmin; GRP94, NEC 99.6 5.6E-16 1.9E-20 162.2 2.1 113 125-248 9-149 (269)
7 3t0h_A Heat shock protein HSP 99.5 7.4E-16 2.5E-20 157.9 1.9 113 125-248 13-148 (228)
8 3o0i_A HSP90AA1 protein; HSP90 99.5 8.4E-16 2.9E-20 160.1 1.1 113 125-248 41-176 (256)
9 2gqp_A Endoplasmin; GRP94, HSP 99.5 1.2E-15 4.2E-20 156.4 1.0 113 125-248 13-153 (236)
10 2wer_A ATP-dependent molecular 99.5 2.5E-15 8.5E-20 151.8 2.5 112 126-248 8-142 (220)
11 2cg9_A ATP-dependent molecular 99.5 7.9E-15 2.7E-19 169.8 6.4 113 125-248 7-142 (677)
12 1yc1_A HSP 86, heat shock prot 99.5 2.4E-15 8.1E-20 157.0 1.3 135 103-248 24-184 (264)
13 2o1u_A Endoplasmin; GRP94, HSP 99.5 1.9E-14 6.6E-19 166.4 6.4 114 124-248 25-166 (666)
14 2ior_A Chaperone protein HTPG; 99.5 8.7E-15 3E-19 149.8 1.0 94 152-248 47-165 (235)
15 1b63_A MUTL; DNA mismatch repa 99.1 5.6E-11 1.9E-15 127.1 7.8 89 151-248 23-118 (333)
16 3na3_A DNA mismatch repair pro 99.0 2.6E-10 8.8E-15 123.5 7.1 90 151-248 27-122 (348)
17 3h4l_A DNA mismatch repair pro 99.0 1.9E-10 6.4E-15 125.3 5.3 90 151-248 24-119 (367)
18 1h7s_A PMS1 protein homolog 2; 99.0 3.7E-10 1.3E-14 122.6 5.7 89 151-248 33-128 (365)
19 3fv5_A DNA topoisomerase 4 sub 98.8 3.5E-09 1.2E-13 106.4 5.1 107 132-248 1-120 (201)
20 1ei1_A DNA gyrase B, GYRB; ATP 98.5 1.1E-07 3.9E-12 104.2 6.2 112 130-248 12-137 (391)
21 1s16_A Topoisomerase IV subuni 98.4 2.9E-07 9.8E-12 101.0 6.5 107 131-248 14-134 (390)
22 4duh_A DNA gyrase subunit B; s 98.4 2.6E-07 8.7E-12 94.4 5.1 112 130-248 13-138 (220)
23 4emv_A DNA topoisomerase IV, B 98.2 8.8E-07 3E-11 90.9 5.2 122 115-248 8-142 (226)
24 1kij_A DNA gyrase subunit B; t 98.1 1.6E-06 5.4E-11 95.1 5.1 112 130-248 11-135 (390)
25 3cwv_A DNA gyrase, B subunit, 98.1 2.3E-06 8E-11 93.2 5.9 106 132-248 11-120 (369)
26 1mu5_A Type II DNA topoisomera 98.1 3.6E-06 1.2E-10 94.3 6.9 98 151-248 31-136 (471)
27 1zxm_A TOPO IIA ATPase, DNA to 98.0 3.2E-06 1.1E-10 93.1 4.4 92 151-247 51-156 (400)
28 2zbk_B Type 2 DNA topoisomeras 98.0 5.9E-06 2E-10 93.9 6.7 98 151-248 30-135 (530)
29 3lnu_A Topoisomerase IV subuni 97.8 1.1E-05 3.7E-10 89.3 5.4 118 116-248 22-153 (408)
30 1id0_A PHOQ histidine kinase; 97.6 0.00013 4.4E-09 66.2 8.4 87 151-246 43-132 (152)
31 2q2e_B Type 2 DNA topoisomeras 97.6 2.8E-05 9.6E-10 90.0 4.8 98 150-248 35-140 (621)
32 2c2a_A Sensor histidine kinase 97.6 5.8E-05 2E-09 74.7 6.4 94 151-246 137-235 (258)
33 3sl2_A Sensor histidine kinase 97.6 6.5E-05 2.2E-09 70.6 6.1 94 152-246 43-139 (177)
34 1bxd_A ENVZ(290-450), protein 97.6 0.00015 5.3E-09 66.8 7.8 89 151-246 46-137 (161)
35 3a0y_A Sensor protein; ATP-LID 97.5 0.00019 6.5E-09 64.7 7.3 86 151-245 46-135 (152)
36 2btz_A Pyruvate dehydrogenase 97.5 0.00015 5.2E-09 77.7 7.6 94 151-246 230-337 (394)
37 2q8g_A [pyruvate dehydrogenase 97.5 0.00019 6.4E-09 77.5 8.1 94 151-246 242-350 (407)
38 1i58_A Chemotaxis protein CHEA 97.5 0.00012 4.2E-09 69.4 5.8 92 152-246 47-176 (189)
39 2e0a_A Pyruvate dehydrogenase 97.4 0.0002 6.9E-09 76.9 7.4 94 151-246 229-337 (394)
40 4ew8_A Sensor protein DIVL; si 97.3 0.00031 1.1E-08 69.4 7.1 87 151-246 154-243 (268)
41 1y8o_A [pyruvate dehydrogenase 97.3 0.00026 8.9E-09 76.9 7.1 94 151-246 252-361 (419)
42 1ysr_A Sensor-type histidine k 97.3 0.00033 1.1E-08 63.7 6.6 89 151-246 45-136 (150)
43 1r62_A Nitrogen regulation pro 97.3 0.00016 5.4E-09 65.6 4.2 87 152-246 48-147 (160)
44 3d36_A Sporulation kinase B; G 97.3 0.00043 1.5E-08 66.9 7.5 88 151-246 122-212 (244)
45 3ttz_A DNA gyrase subunit B; p 97.3 0.00013 4.5E-09 73.3 3.7 99 132-248 12-111 (198)
46 1gkz_A [3-methyl-2-oxobutanoat 97.2 0.00026 8.9E-09 75.6 5.8 94 151-246 237-360 (388)
47 1th8_A Anti-sigma F factor; SP 97.2 0.00061 2.1E-08 62.2 7.2 86 152-246 39-126 (145)
48 3ehg_A Sensor kinase (YOCF pro 97.1 0.00044 1.5E-08 62.1 5.5 74 151-246 39-115 (128)
49 1pvg_A DNA topoisomerase II; G 97.1 0.00027 9.1E-09 78.5 4.7 89 153-246 65-167 (418)
50 3ehh_A Sensor kinase (YOCF pro 97.0 0.0011 3.7E-08 63.6 6.9 72 153-246 131-205 (218)
51 1b3q_A Protein (chemotaxis pro 97.0 0.0012 4E-08 71.2 7.7 91 153-246 107-235 (379)
52 3jz3_A Sensor protein QSEC; he 97.0 0.00035 1.2E-08 66.6 3.2 86 152-247 117-205 (222)
53 3a0r_A Sensor protein; four he 96.9 0.00087 3E-08 68.3 6.0 86 151-245 243-332 (349)
54 3zxo_A Redox sensor histidine 96.7 0.0016 5.3E-08 57.7 5.4 71 151-247 42-115 (129)
55 3zxq_A Hypoxia sensor histidin 96.0 0.0065 2.2E-07 53.5 5.2 70 151-246 38-110 (124)
56 3oja_B Anopheles plasmodium-re 94.1 0.4 1.4E-05 53.7 13.2 25 720-744 455-479 (597)
57 4fpp_A Phosphotransferase; fou 93.6 0.077 2.6E-06 53.2 5.8 86 151-245 145-235 (247)
58 4gfh_A DNA topoisomerase 2; to 92.6 0.13 4.4E-06 63.8 6.6 86 154-244 61-160 (1177)
59 3na7_A HP0958; flagellar bioge 92.2 1.2 4.2E-05 45.8 12.5 93 723-815 92-185 (256)
60 2dfs_A Myosin-5A; myosin-V, in 90.2 1.5 5.1E-05 54.0 12.5 26 750-775 985-1010(1080)
61 3na7_A HP0958; flagellar bioge 89.9 3.7 0.00013 42.3 13.3 21 723-743 62-82 (256)
62 2fxo_A Myosin heavy chain, car 89.5 4.6 0.00016 37.8 12.6 83 723-811 15-99 (129)
63 1i84_S Smooth muscle myosin he 89.2 0.94 3.2E-05 56.0 9.7 11 487-497 456-466 (1184)
64 2dfs_A Myosin-5A; myosin-V, in 88.9 1.4 4.8E-05 54.3 10.9 93 723-815 937-1043(1080)
65 3ke6_A Protein RV1364C/MT1410; 88.8 0.39 1.3E-05 52.0 5.3 75 152-245 297-373 (399)
66 2v71_A Nuclear distribution pr 88.5 7 0.00024 39.5 13.7 89 724-812 27-140 (189)
67 3u59_A Tropomyosin beta chain; 88.2 8.9 0.00031 34.5 13.0 89 723-815 11-99 (101)
68 1l8d_A DNA double-strand break 88.1 6.4 0.00022 35.3 12.1 65 749-813 24-103 (112)
69 3o0z_A RHO-associated protein 87.2 8.8 0.0003 38.1 13.2 84 735-818 30-134 (168)
70 1i84_S Smooth muscle myosin he 87.1 1.9 6.6E-05 53.3 10.6 13 489-501 535-547 (1184)
71 3u1c_A Tropomyosin alpha-1 cha 86.8 12 0.00041 33.8 13.0 89 723-815 11-99 (101)
72 1ixm_A SPO0B, protein (sporula 86.8 0.39 1.3E-05 47.9 3.6 57 156-212 109-170 (192)
73 2ocy_A RAB guanine nucleotide 86.6 9.9 0.00034 37.3 13.1 30 787-816 114-143 (154)
74 1ses_A Seryl-tRNA synthetase; 86.0 3 0.0001 46.2 10.4 97 723-822 4-104 (421)
75 3oja_A Leucine-rich immune mol 86.0 2.3 7.8E-05 46.8 9.5 30 781-810 449-478 (487)
76 3oja_A Leucine-rich immune mol 85.5 3.8 0.00013 45.0 10.9 57 758-814 419-475 (487)
77 2jee_A YIIU; FTSZ, septum, coi 85.5 11 0.00036 33.6 11.5 74 735-812 6-79 (81)
78 3oja_B Anopheles plasmodium-re 85.0 6.1 0.00021 44.2 12.4 100 720-819 462-582 (597)
79 1c1g_A Tropomyosin; contractIl 84.6 15 0.00052 35.2 13.5 17 726-742 11-27 (284)
80 2eqb_B RAB guanine nucleotide 84.6 10 0.00036 34.6 11.4 49 722-770 13-61 (97)
81 2oto_A M protein; helical coil 83.0 19 0.00064 34.5 13.3 44 725-768 26-83 (155)
82 3a7p_A Autophagy protein 16; c 83.0 3.3 0.00011 40.5 7.9 59 722-780 69-134 (152)
83 3tnu_A Keratin, type I cytoske 80.6 14 0.00047 34.7 11.1 81 722-809 32-112 (131)
84 2dq0_A Seryl-tRNA synthetase; 80.1 9 0.00031 42.9 11.3 98 723-822 4-109 (455)
85 3tnu_B Keratin, type II cytosk 79.9 17 0.00059 33.9 11.4 80 723-809 31-110 (129)
86 3hnw_A Uncharacterized protein 78.8 9.1 0.00031 36.6 9.3 63 749-815 68-130 (138)
87 2i1j_A Moesin; FERM, coiled-co 78.5 1.9 6.4E-05 49.7 5.3 40 773-812 418-457 (575)
88 1wle_A Seryl-tRNA synthetase; 78.1 11 0.00039 42.8 11.4 99 723-822 43-156 (501)
89 2v4h_A NF-kappa-B essential mo 76.7 19 0.00065 33.6 10.4 37 729-765 25-61 (110)
90 2fxo_A Myosin heavy chain, car 76.1 15 0.00053 34.3 9.9 47 724-770 37-90 (129)
91 3mov_A Lamin-B1; LMNB1, B-type 76.0 6.7 0.00023 35.4 7.1 71 722-796 13-87 (95)
92 3vkg_A Dynein heavy chain, cyt 74.4 9.6 0.00033 52.1 10.9 14 791-804 2066-2079(3245)
93 3qne_A Seryl-tRNA synthetase, 74.4 17 0.0006 41.2 11.6 98 723-822 4-111 (485)
94 1m1j_B Fibrinogen beta chain; 74.3 27 0.00093 39.5 13.0 40 726-765 98-137 (464)
95 2q6q_A Spindle POLE BODY compo 74.1 7.7 0.00026 33.5 6.5 38 735-772 20-61 (74)
96 2zqm_A Prefoldin beta subunit 73.0 38 0.0013 30.1 11.4 84 732-815 10-111 (117)
97 1x8y_A Lamin A/C; structural p 71.3 9.1 0.00031 33.7 6.7 72 723-798 5-80 (86)
98 2v71_A Nuclear distribution pr 71.2 68 0.0023 32.3 13.7 36 723-758 12-47 (189)
99 4etp_A Kinesin-like protein KA 70.9 5.1 0.00017 44.2 6.1 50 753-813 14-63 (403)
100 2dq3_A Seryl-tRNA synthetase; 70.8 11 0.00038 41.7 8.8 98 723-822 4-108 (425)
101 3cvf_A Homer-3, homer protein 70.7 7.2 0.00025 34.4 5.8 41 726-773 4-44 (79)
102 1gk4_A Vimentin; intermediate 70.6 16 0.00054 32.0 8.0 71 723-797 3-77 (84)
103 3u59_A Tropomyosin beta chain; 69.4 36 0.0012 30.5 10.3 71 723-797 25-95 (101)
104 3cvf_A Homer-3, homer protein 69.1 8.2 0.00028 34.1 5.8 42 722-763 14-55 (79)
105 3cve_A Homer protein homolog 1 68.7 8.8 0.0003 33.3 5.8 25 749-773 14-38 (72)
106 3brv_B NF-kappa-B essential mo 67.1 10 0.00035 32.8 5.8 21 720-741 8-28 (70)
107 3s84_A Apolipoprotein A-IV; fo 66.0 13 0.00046 39.0 7.8 83 724-809 161-259 (273)
108 2ocy_A RAB guanine nucleotide 64.9 27 0.00093 34.2 9.1 20 722-741 21-40 (154)
109 2p22_C Protein SRN2; endosome, 64.8 24 0.00082 35.5 9.0 87 729-815 80-171 (192)
110 2w6b_A RHO guanine nucleotide 64.8 26 0.00088 29.1 7.4 37 762-798 16-52 (56)
111 3s4r_A Vimentin; alpha-helix, 64.7 35 0.0012 30.5 9.1 49 749-803 23-71 (93)
112 3qh9_A Liprin-beta-2; coiled-c 64.0 23 0.00078 31.5 7.5 54 723-776 21-74 (81)
113 3hnw_A Uncharacterized protein 62.6 44 0.0015 31.9 10.0 47 728-774 68-114 (138)
114 4fla_A Regulation of nuclear P 62.4 37 0.0013 33.0 9.5 63 733-799 80-142 (152)
115 1cii_A Colicin IA; bacteriocin 61.5 81 0.0028 35.9 13.1 81 731-811 352-441 (602)
116 3lss_A Seryl-tRNA synthetase; 61.1 47 0.0016 37.7 11.5 99 723-822 10-144 (484)
117 3u1c_A Tropomyosin alpha-1 cha 61.0 65 0.0022 29.0 10.3 47 724-770 26-72 (101)
118 2v66_B Nuclear distribution pr 60.9 89 0.003 29.1 11.3 19 723-741 12-30 (111)
119 3vkg_A Dynein heavy chain, cyt 60.4 29 0.001 47.6 11.1 21 784-804 2052-2072(3245)
120 3iv1_A Tumor susceptibility ge 60.3 56 0.0019 28.8 9.3 63 732-801 11-73 (78)
121 3u06_A Protein claret segregat 60.0 11 0.00037 41.8 6.0 22 789-813 42-63 (412)
122 1ic2_A Tropomyosin alpha chain 59.5 42 0.0014 29.0 8.5 46 723-768 8-53 (81)
123 2j1d_G DAAM1, disheveled-assoc 59.0 27 0.00091 39.2 9.1 23 723-745 294-316 (483)
124 3ghg_A Fibrinogen alpha chain; 58.0 82 0.0028 36.3 12.6 96 728-824 57-168 (562)
125 3jsv_C NF-kappa-B essential mo 57.6 40 0.0014 30.7 8.2 57 731-787 5-64 (94)
126 1ic2_A Tropomyosin alpha chain 57.1 94 0.0032 26.7 10.8 31 733-763 4-34 (81)
127 3ryc_E Stathmin-4; alpha-tubul 56.2 96 0.0033 30.1 11.1 25 788-812 94-122 (143)
128 3i00_A HIP-I, huntingtin-inter 56.2 34 0.0012 32.1 7.8 45 720-764 14-62 (120)
129 3tnu_A Keratin, type I cytoske 56.1 31 0.0011 32.3 7.6 56 723-778 54-113 (131)
130 2e7s_A RAB guanine nucleotide 55.6 10 0.00036 36.4 4.3 29 787-815 102-130 (135)
131 1m1j_B Fibrinogen beta chain; 55.6 1.2E+02 0.0041 34.4 13.5 13 723-735 102-114 (464)
132 3tnu_B Keratin, type II cytosk 55.6 32 0.0011 32.0 7.6 56 723-778 52-111 (129)
133 1f5n_A Interferon-induced guan 55.4 44 0.0015 38.7 10.2 20 513-532 380-399 (592)
134 4dnd_A Syntaxin-10, SYN10; str 54.9 28 0.00095 33.0 7.1 58 745-803 69-127 (130)
135 3s84_A Apolipoprotein A-IV; fo 54.7 1.3E+02 0.0044 31.5 12.8 22 724-745 18-39 (273)
136 3qfl_A MLA10; coiled-coil, (CC 54.7 56 0.0019 29.6 8.9 65 743-812 13-79 (115)
137 3cve_A Homer protein homolog 1 54.6 77 0.0026 27.5 9.1 39 723-761 9-47 (72)
138 3q0x_A Centriole protein; cent 53.3 30 0.001 35.8 7.6 51 720-770 163-213 (228)
139 3etw_A Adhesin A; antiparallel 52.2 35 0.0012 32.2 7.2 9 735-743 19-27 (119)
140 3ghg_A Fibrinogen alpha chain; 52.2 53 0.0018 37.8 9.9 24 792-815 114-137 (562)
141 1d7m_A Cortexillin I; coiled-c 51.6 1.2E+02 0.0042 27.4 10.2 62 733-805 2-63 (101)
142 3m9b_A Proteasome-associated A 50.9 15 0.00051 38.6 4.9 27 749-775 68-94 (251)
143 1m1j_C Fibrinogen gamma chain; 50.8 1.2E+02 0.0041 33.8 12.4 31 786-816 103-133 (409)
144 3o0z_A RHO-associated protein 49.1 1.6E+02 0.0056 29.2 11.7 82 734-815 12-103 (168)
145 3brv_B NF-kappa-B essential mo 49.0 63 0.0022 28.0 7.6 48 724-771 22-69 (70)
146 2w6a_A ARF GTPase-activating p 48.6 56 0.0019 27.6 7.0 48 728-775 13-60 (63)
147 2jee_A YIIU; FTSZ, septum, coi 48.4 66 0.0023 28.5 7.9 54 722-775 7-60 (81)
148 2q12_A DIP13 alpha, DCC-intera 48.2 1.8E+02 0.0063 29.3 12.5 110 711-820 11-156 (265)
149 3u06_A Protein claret segregat 47.7 37 0.0013 37.6 7.7 50 726-782 8-57 (412)
150 3s4r_A Vimentin; alpha-helix, 47.2 1.1E+02 0.0039 27.2 9.5 49 723-774 25-74 (93)
151 3m91_A Proteasome-associated A 47.2 50 0.0017 26.9 6.4 27 749-775 23-49 (51)
152 2no2_A HIP-I, huntingtin-inter 47.2 1.7E+02 0.0058 26.8 11.6 29 779-807 73-101 (107)
153 3thf_A Protein shroom; coiled- 46.5 51 0.0017 33.4 7.7 50 731-780 83-139 (190)
154 3he5_A Synzip1; heterodimeric 45.9 54 0.0018 25.8 6.1 13 787-799 37-49 (49)
155 3r2p_A Apolipoprotein A-I; amp 45.8 1.9E+02 0.0065 28.1 11.8 49 722-770 72-125 (185)
156 2wvr_A Geminin; DNA replicatio 45.4 29 0.001 35.4 5.8 47 724-770 111-160 (209)
157 2w6b_A RHO guanine nucleotide 45.2 36 0.0012 28.2 5.3 48 714-761 3-50 (56)
158 3ol1_A Vimentin; structural ge 44.6 1.1E+02 0.0036 28.4 9.2 26 789-814 70-102 (119)
159 3lay_A Zinc resistance-associa 44.1 34 0.0012 33.9 6.1 27 722-748 79-105 (175)
160 3a7p_A Autophagy protein 16; c 43.8 1.8E+02 0.0063 28.4 10.9 41 736-776 69-109 (152)
161 3nmd_A CGMP dependent protein 42.9 52 0.0018 28.6 6.2 39 731-769 22-60 (72)
162 1uix_A RHO-associated kinase; 42.2 1.3E+02 0.0044 26.1 8.5 25 723-747 6-30 (71)
163 3ryc_E Stathmin-4; alpha-tubul 41.9 1E+02 0.0036 29.9 8.8 16 784-799 108-123 (143)
164 1go4_E MAD1 (mitotic arrest de 40.7 33 0.0011 31.5 4.9 27 720-746 18-44 (100)
165 2eqb_B RAB guanine nucleotide 39.9 2.2E+02 0.0076 26.0 12.3 51 728-778 5-62 (97)
166 2e7s_A RAB guanine nucleotide 39.6 1.1E+02 0.0037 29.5 8.5 23 720-742 7-29 (135)
167 4etp_A Kinesin-like protein KA 39.2 69 0.0023 35.3 8.2 52 723-781 5-56 (403)
168 2i1j_A Moesin; FERM, coiled-co 38.3 15 0.0005 42.4 2.8 39 771-809 360-398 (575)
169 3ol1_A Vimentin; structural ge 38.1 1.1E+02 0.0039 28.2 8.3 23 745-767 58-80 (119)
170 3qwe_A GMIP, GEM-interacting p 38.1 67 0.0023 34.1 7.5 19 786-804 175-193 (279)
171 2avr_X Adhesion A; antiparalle 37.6 82 0.0028 29.8 7.2 8 723-730 11-18 (119)
172 3s9g_A Protein hexim1; cyclin 37.5 1E+02 0.0034 28.4 7.5 52 725-776 34-85 (104)
173 3ljm_A Coil Ser L9C; de novo d 37.4 26 0.00088 25.4 2.9 21 749-769 8-28 (31)
174 4ew8_A Sensor protein DIVL; si 37.2 58 0.002 31.6 6.5 18 723-740 19-36 (268)
175 4aj5_A SKA1, spindle and kinet 36.3 19 0.00064 32.6 2.5 38 716-753 32-69 (91)
176 4h8s_A DCC-interacting protein 36.2 4.3E+02 0.015 28.3 14.4 111 710-820 33-179 (407)
177 1joc_A EEA1, early endosomal a 34.7 86 0.0029 29.1 6.9 32 728-766 4-35 (125)
178 1lwu_C Fibrinogen gamma chain; 34.6 72 0.0025 34.5 7.2 39 730-768 7-45 (323)
179 1j1d_C Troponin I, TNI; THIN f 34.6 1.3E+02 0.0044 28.8 8.2 68 749-823 41-115 (133)
180 3obv_E Protein diaphanous homo 34.0 2.8E+02 0.0095 31.0 12.1 16 802-817 428-443 (457)
181 1k1f_A Breakpoint cluster regi 33.6 45 0.0015 28.7 4.3 30 741-776 28-57 (72)
182 3nmd_A CGMP dependent protein 33.3 1.1E+02 0.0038 26.6 6.8 27 771-797 37-63 (72)
183 1f5n_A Interferon-induced guan 33.1 1.6E+02 0.0053 34.2 10.1 16 795-810 567-582 (592)
184 1u2m_A Histone-like protein HL 33.0 26 0.0009 32.4 3.2 23 724-746 26-48 (143)
185 2q13_A DCC-interacting protein 32.9 3.6E+02 0.012 28.7 12.3 109 712-820 12-156 (385)
186 3bas_A Myosin heavy chain, str 32.8 2.5E+02 0.0086 24.6 11.0 41 723-764 16-57 (89)
187 1uii_A Geminin; human, DNA rep 32.3 52 0.0018 29.4 4.6 15 728-742 46-60 (83)
188 1j1d_B Troponin T, TNT; THIN f 31.8 2.2E+02 0.0074 26.3 8.9 54 762-822 44-97 (106)
189 3iyk_A VP5; icosahedral virus; 31.7 4.1E+02 0.014 30.5 12.7 112 706-817 76-204 (526)
190 2k48_A Nucleoprotein; viral pr 31.5 3E+02 0.01 25.5 9.6 58 752-809 45-103 (107)
191 3bas_A Myosin heavy chain, str 31.2 2.1E+02 0.0072 25.1 8.5 45 727-771 13-57 (89)
192 2efr_A General control protein 31.0 3.8E+02 0.013 26.1 13.5 37 749-785 84-120 (155)
193 3mq9_A Bone marrow stromal ant 30.8 5E+02 0.017 28.0 13.3 89 727-815 372-463 (471)
194 1wt6_A Myotonin-protein kinase 30.4 1.7E+02 0.0059 25.9 7.6 12 788-799 59-70 (81)
195 2qag_B Septin-6, protein NEDD5 30.3 11 0.00037 42.1 0.0 64 731-794 329-397 (427)
196 1fxk_C Protein (prefoldin); ar 30.0 68 0.0023 29.5 5.4 52 713-764 80-131 (133)
197 3swk_A Vimentin; cytoskeleton, 29.8 1.5E+02 0.0053 26.0 7.3 24 789-812 50-73 (86)
198 2fic_A Bridging integrator 1; 29.7 4.2E+02 0.015 26.2 13.5 92 723-814 136-249 (251)
199 1fxk_A Prefoldin; archaeal pro 29.6 2.8E+02 0.0096 24.1 12.4 39 774-812 65-103 (107)
200 1s94_A S-syntaxin; three helix 29.4 2.5E+02 0.0087 26.9 9.6 30 782-812 121-150 (180)
201 3iyn_Q Protein IX, PIX, hexon- 28.9 34 0.0011 32.7 3.0 35 741-775 97-131 (140)
202 4dk0_A Putative MACA; alpha-ha 28.8 1.6E+02 0.0055 30.6 8.7 13 757-769 85-97 (369)
203 3mtu_E Head morphogenesis prot 28.7 1.1E+02 0.0038 27.0 6.0 45 722-769 31-75 (77)
204 1wlq_A Geminin; coiled-coil; 2 28.7 83 0.0028 28.1 5.3 36 728-763 38-76 (83)
205 4emc_A Monopolin complex subun 28.6 1.8E+02 0.0061 29.4 8.4 19 796-814 66-84 (190)
206 3ghg_C Fibrinogen gamma chain; 28.5 3.7E+02 0.012 30.1 11.7 30 788-817 105-134 (411)
207 2fcw_A Alpha-2-macroglobulin r 28.5 2.3E+02 0.0077 26.4 8.4 75 728-812 24-98 (109)
208 1wt6_A Myotonin-protein kinase 28.3 95 0.0032 27.6 5.6 18 751-768 40-57 (81)
209 3kqg_A Langerin, C-type lectin 28.2 57 0.0019 30.6 4.6 29 742-770 9-37 (182)
210 1lwu_C Fibrinogen gamma chain; 27.7 97 0.0033 33.5 6.8 46 723-768 7-52 (323)
211 3l4f_A RHO guanine nucleotide 27.7 2.3E+02 0.0079 24.0 7.5 45 754-798 5-49 (61)
212 2b9c_A Striated-muscle alpha t 27.6 4.2E+02 0.014 25.4 13.2 68 749-816 52-122 (147)
213 3fpp_A Macrolide-specific effl 27.6 2.4E+02 0.0082 29.0 9.6 25 754-778 81-105 (341)
214 1lrz_A FEMA, factor essential 27.6 97 0.0033 33.7 6.9 49 722-771 248-296 (426)
215 1s1c_X RHO-associated, coiled- 27.5 2.8E+02 0.0095 24.0 8.2 59 723-787 8-70 (71)
216 4dci_A Uncharacterized protein 27.2 3.3E+02 0.011 26.5 9.8 26 773-798 76-101 (150)
217 1lrz_A FEMA, factor essential 27.2 1.4E+02 0.0047 32.4 8.0 55 754-813 245-299 (426)
218 4ani_A Protein GRPE; chaperone 26.9 2E+02 0.0068 29.4 8.6 87 720-811 65-156 (213)
219 2yy0_A C-MYC-binding protein; 26.9 45 0.0015 27.1 3.1 21 722-742 20-40 (53)
220 2v66_B Nuclear distribution pr 26.7 1.4E+02 0.0048 27.8 6.7 28 786-813 59-88 (111)
221 1x79_B RAB GTPase binding effe 26.4 2.4E+02 0.0083 26.3 8.3 17 792-808 63-79 (112)
222 2wuj_A Septum site-determining 26.3 24 0.00084 28.8 1.5 23 721-743 34-56 (57)
223 3ajw_A Flagellar FLIJ protein; 26.1 3.7E+02 0.013 24.4 10.8 37 719-755 10-46 (150)
224 2lw1_A ABC transporter ATP-bin 25.9 1.1E+02 0.0036 26.8 5.6 19 750-768 57-75 (89)
225 1ci6_A Transcription factor AT 25.7 2.8E+02 0.0094 22.9 7.8 49 732-781 14-62 (63)
226 1hjb_A Ccaat/enhancer binding 25.7 2.5E+02 0.0085 25.0 7.9 33 749-781 43-75 (87)
227 1j1e_C Troponin I, TNI; THIN f 25.6 1.9E+02 0.0065 29.0 7.9 68 749-823 41-115 (180)
228 2ke4_A CDC42-interacting prote 25.3 1.7E+02 0.006 26.4 7.0 30 752-781 58-87 (98)
229 2xdj_A Uncharacterized protein 25.3 3.5E+02 0.012 23.8 9.4 24 789-812 35-58 (83)
230 2xnx_M M protein, M1-BC1; cell 25.2 1.9E+02 0.0063 28.3 7.5 17 760-776 40-56 (146)
231 1gqe_A Release factor 2, RF2; 25.0 5.3E+02 0.018 28.4 12.0 23 798-820 97-119 (365)
232 1gs9_A Apolipoprotein E, APOE4 24.8 1.2E+02 0.0041 29.6 6.3 22 723-744 90-111 (165)
233 2ve7_A Kinetochore protein HEC 24.8 90 0.0031 33.3 5.9 54 728-783 167-232 (315)
234 4dzo_A Mitotic spindle assembl 23.9 74 0.0025 29.9 4.4 26 756-781 4-29 (123)
235 3htk_A Structural maintenance 23.7 2.8E+02 0.0095 22.1 8.4 21 792-812 37-57 (60)
236 4dk0_A Putative MACA; alpha-ha 23.4 97 0.0033 32.3 5.7 31 712-742 61-91 (369)
237 2j5u_A MREC protein; bacterial 23.3 45 0.0015 34.5 3.1 21 723-743 21-41 (255)
238 4akg_A Glutathione S-transfera 23.3 55 0.0019 44.3 4.6 70 723-798 1852-1921(2695)
239 3haj_A Human pacsin2 F-BAR; pa 22.7 8E+02 0.028 27.1 13.4 12 790-801 187-198 (486)
240 1u00_A HSC66, chaperone protei 22.6 5.4E+02 0.018 25.7 10.9 19 749-767 143-161 (227)
241 4e61_A Protein BIM1; EB1-like 22.6 1.8E+02 0.0062 27.0 6.6 18 754-771 23-40 (106)
242 3lbx_A Spectrin alpha chain, e 22.4 4.8E+02 0.017 24.4 10.9 33 745-777 91-123 (161)
243 2efr_A General control protein 22.3 5.5E+02 0.019 25.0 13.7 38 775-812 99-136 (155)
244 1deq_A Fibrinogen (alpha chain 22.3 5.8E+02 0.02 28.4 11.5 23 789-811 135-157 (390)
245 2no2_A HIP-I, huntingtin-inter 22.2 4.5E+02 0.015 24.0 12.0 64 751-814 31-94 (107)
246 2ic6_A Nucleocapsid protein; h 22.0 4.1E+02 0.014 23.4 9.0 58 752-809 15-73 (78)
247 1deq_A Fibrinogen (alpha chain 21.9 5.9E+02 0.02 28.3 11.5 14 802-815 141-154 (390)
248 2ic9_A Nucleocapsid protein; h 21.9 4.6E+02 0.016 23.9 9.3 58 752-809 15-73 (96)
249 2qag_C Septin-7; cell cycle, c 21.7 19 0.00066 39.7 0.0 12 734-745 328-339 (418)
250 1h2v_C 80 kDa nuclear CAP bind 21.2 49 0.0017 39.5 3.3 67 723-789 633-712 (771)
251 2b5u_A Colicin E3; high resolu 21.1 6.1E+02 0.021 29.2 11.6 29 759-787 317-345 (551)
252 2b5u_A Colicin E3; high resolu 20.9 5.9E+02 0.02 29.4 11.5 78 723-807 297-375 (551)
253 2yy0_A C-MYC-binding protein; 20.9 98 0.0034 25.1 4.0 27 787-813 25-51 (53)
254 3mq7_A Bone marrow stromal ant 20.9 2E+02 0.0069 27.1 6.6 43 733-775 58-104 (121)
255 3d5a_X RF1, peptide chain rele 20.9 2.9E+02 0.0099 30.3 8.9 10 733-742 8-17 (354)
256 3a6m_A Protein GRPE, HSP-70 co 20.9 2.8E+02 0.0095 27.4 8.1 87 722-811 27-114 (177)
257 2zdi_C Prefoldin subunit alpha 20.8 4.4E+02 0.015 24.7 9.3 16 755-770 39-54 (151)
258 1vp7_A Exodeoxyribonuclease VI 20.7 1.3E+02 0.0043 27.6 5.1 48 718-769 38-85 (100)
259 2v0o_A FCHO2, FCH domain only 20.6 6.2E+02 0.021 25.0 14.2 25 788-812 163-187 (276)
260 3m91_A Proteasome-associated A 20.6 1.6E+02 0.0054 23.9 5.1 38 723-760 11-48 (51)
261 4f61_I Stathmin-like domain R4 20.5 4.6E+02 0.016 27.4 9.8 52 758-812 146-201 (240)
262 4adz_A CSOR; transcription, co 20.4 5.8E+02 0.02 24.5 10.8 78 728-808 49-134 (136)
263 1kd8_B GABH BLL, GCN4 acid bas 20.2 1.6E+02 0.0056 22.5 4.7 28 752-779 4-31 (36)
264 2xhe_B Syntaxin1; exocytosis, 20.2 7E+02 0.024 25.4 11.9 26 787-812 137-162 (279)
265 1ytz_T Troponin T; muscle, THI 20.1 1.9E+02 0.0065 26.7 6.2 52 764-822 46-97 (107)
No 1
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=99.67 E-value=3.4e-16 Score=177.95 Aligned_cols=113 Identities=27% Similarity=0.431 Sum_probs=87.5
Q ss_pred CccccCCCccccccCchhhcccccccccHHHHHHHHhccchhhhhC-------------CCceEEEEEEEccCCCceEEE
Q 003366 125 GWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRMLL 191 (826)
Q Consensus 125 ~~~~~~~~l~~~~v~p~fLhSNSTSH~wpFgAIAELIDNAiDA~~~-------------gAt~V~Idi~~~~~~g~~~L~ 191 (826)
.||+++.++.++-+|.-| ++.. .+|+|||+||+||.++ .+..+.|.+..+. +...|+
T Consensus 8 ~Fqaei~~Ll~ll~~~lY------sn~~--ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~--~~~~I~ 77 (559)
T 1y4s_A 8 GFQSEVKQLLHLMIHSLY------SNKE--IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDK--DKRTLT 77 (559)
T ss_dssp ECCTTHHHHHHHHHHHTG------GGTT--HHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEET--TTTEEE
T ss_pred eeeecHHHHHHHHHHhcC------CChH--HHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeC--CCcEEE
Confidence 489999999999888888 5555 4599999999999621 1444556655454 346899
Q ss_pred EEECCCCCCHHHHhhhc-cccccccc-----------cCCcccCcccCcccccccccCCeEEEEeeecC
Q 003366 192 IEDNGGGMNPDKMRHCM-SLGYSAKS-----------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 192 I~DNG~GMs~eeL~~~L-sfG~SsK~-----------~~~~~IGrfG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
|.|||+||+.++|..+| ++|+|.+. .....||+||+||++++| +|++|+|.||+.+
T Consensus 78 I~DnGiGMt~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~-VadkV~V~Sr~~~ 145 (559)
T 1y4s_A 78 ISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFI-VADKVTVRTRAAG 145 (559)
T ss_dssp EEECSSCCCHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHH-HEEEEEEEEECSS
T ss_pred EEECCCCCCHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhh-ccCeEEEEEcCCC
Confidence 99999999999998754 57877642 124589999999998666 8999999999875
No 2
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=99.62 E-value=3e-16 Score=180.40 Aligned_cols=114 Identities=26% Similarity=0.435 Sum_probs=80.9
Q ss_pred CCccccCCCccccccCchhhcccccccccHHHHHHHHhccchhhhhC-------------CCceEEEEEEEccCCCceEE
Q 003366 124 GGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRML 190 (826)
Q Consensus 124 ~~~~~~~~~l~~~~v~p~fLhSNSTSH~wpFgAIAELIDNAiDA~~~-------------gAt~V~Idi~~~~~~g~~~L 190 (826)
..||+++.++.++-+|.-| ++... +|+|||+||+||.++ .+..+.|.+..+. +...|
T Consensus 7 ~~Fqaei~~Ll~ll~~~lY------sn~~i--fLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~--~~~~I 76 (624)
T 2ioq_A 7 RGFQSEVKQLLHLMIHSLY------SNKEI--FLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDK--DKRTL 76 (624)
T ss_dssp --------CCHHHHHHHHS------SCTTH--HHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEET--TTTEE
T ss_pred eeeeecHHHHHHHHHHhcC------CChHH--HHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeC--CCcEE
Confidence 3599999999999998888 66664 599999999999621 1544566665543 34689
Q ss_pred EEEECCCCCCHHHHhhhc-cccccccc-----------cCCcccCcccCcccccccccCCeEEEEeeecC
Q 003366 191 LIEDNGGGMNPDKMRHCM-SLGYSAKS-----------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 191 ~I~DNG~GMs~eeL~~~L-sfG~SsK~-----------~~~~~IGrfG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
+|.|||+||+.++|..++ .+|+|.+. .....||+||+||++++| +|.+|+|+||+.+
T Consensus 77 ~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~-VadkV~V~Sr~~~ 145 (624)
T 2ioq_A 77 TISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFI-VADKVTVRTRAAG 145 (624)
T ss_dssp EEEECSCCCCHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHHHHH-HEEEEEEEEECTT
T ss_pred EEEECCCCCCHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHh-cCCeEEEEECCCC
Confidence 999999999999998754 57777542 134579999999998666 8999999999875
No 3
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=99.60 E-value=1.8e-16 Score=163.69 Aligned_cols=113 Identities=21% Similarity=0.359 Sum_probs=90.0
Q ss_pred CccccCCCccccccCchhhcccccccccHHHHHHHHhccchhhhhC-------------CCceEEEEEEEccCCCceEEE
Q 003366 125 GWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRMLL 191 (826)
Q Consensus 125 ~~~~~~~~l~~~~v~p~fLhSNSTSH~wpFgAIAELIDNAiDA~~~-------------gAt~V~Idi~~~~~~g~~~L~ 191 (826)
.||+++.++.++-+|.-| ++++.| |+|||.||+||.++ ....+.|.+..++ ....|.
T Consensus 20 ~Fqae~~~ll~ll~~~lY------s~~~if--LRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~--~~~~L~ 89 (239)
T 3nmq_A 20 AFQAEIAQLMSLIINTFY------SNKEIF--LRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNP--QERTLT 89 (239)
T ss_dssp ECCHHHHHHHHHHHHSCC------CCTTHH--HHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEET--TTTEEE
T ss_pred eehhhHHHHHHHHHHhcc------CCcHHH--HHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeC--CccEEE
Confidence 489999999999999888 777876 99999999999753 1123567766554 456899
Q ss_pred EEECCCCCCHHHHhhhc-cccccccc---------cCCcccCcccCcccccccccCCeEEEEeeecC
Q 003366 192 IEDNGGGMNPDKMRHCM-SLGYSAKS---------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 192 I~DNG~GMs~eeL~~~L-sfG~SsK~---------~~~~~IGrfG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
|.|||.||++++|.+.| .+++|.+. .....||+||+||++++| +|.+|+|+||+.+
T Consensus 90 I~DnGiGMt~edL~~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~-vadkv~V~Sk~~~ 155 (239)
T 3nmq_A 90 LVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVVVITKHND 155 (239)
T ss_dssp EEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTT
T ss_pred EEeCCCCCCHHHHHHHHHHHhcccchhhhhhhcccCCcccccccCcccccccc-cCCEEEEEEeeCC
Confidence 99999999999997644 56666432 234689999999998866 9999999999864
No 4
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=99.60 E-value=2.7e-16 Score=165.62 Aligned_cols=113 Identities=22% Similarity=0.361 Sum_probs=90.0
Q ss_pred CccccCCCccccccCchhhcccccccccHHHHHHHHhccchhhhhC-------------CCceEEEEEEEccCCCceEEE
Q 003366 125 GWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRMLL 191 (826)
Q Consensus 125 ~~~~~~~~l~~~~v~p~fLhSNSTSH~wpFgAIAELIDNAiDA~~~-------------gAt~V~Idi~~~~~~g~~~L~ 191 (826)
.||+++.+|..+-++.-| ++.++| |+|||.||+||+++ ....+.|.+..++ ....|+
T Consensus 27 ~Fqaei~~Ll~ll~~~lY------sn~~if--LRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~--~~~tLt 96 (281)
T 3peh_A 27 QYQTEVTRLMDIIVNSLY------TQKEVF--LRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANK--EKNILS 96 (281)
T ss_dssp HHHHHHHHHHHHHHHHHT------TCGGGH--HHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEET--TTTEEE
T ss_pred eehHHHHHHHHHHHHhcc------CChHHH--HHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcC--CCcEEE
Confidence 489999999999998888 667766 99999999999752 1134667766554 346899
Q ss_pred EEECCCCCCHHHHhhhc-cccccccc----------cCCcccCcccCcccccccccCCeEEEEeeecC
Q 003366 192 IEDNGGGMNPDKMRHCM-SLGYSAKS----------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 192 I~DNG~GMs~eeL~~~L-sfG~SsK~----------~~~~~IGrfG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
|.|||+||++++|.+.| .+|+|.+. .....||+||+||++++| +|.+|+|+||+.+
T Consensus 97 I~DNGiGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~-vadkV~V~Sk~~~ 163 (281)
T 3peh_A 97 ITDTGIGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFL-VADKVIVYTKNND 163 (281)
T ss_dssp EEECSCCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGG-TEEEEEEEEECTT
T ss_pred EEeCCCCCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhcc-ccCEEEEEEecCC
Confidence 99999999999998765 46666432 235689999999998866 9999999999865
No 5
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=99.57 E-value=6.8e-16 Score=161.12 Aligned_cols=110 Identities=23% Similarity=0.369 Sum_probs=90.5
Q ss_pred CccccCCCccccccCchhhcccccccccHHHHHHHHhccchhhhhCC---------------------------------
Q 003366 125 GWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNG--------------------------------- 171 (826)
Q Consensus 125 ~~~~~~~~l~~~~v~p~fLhSNSTSH~wpFgAIAELIDNAiDA~~~g--------------------------------- 171 (826)
.||+++.+|.++.+|.-| |++.+| |+|||.||.||+.+-
T Consensus 28 ~Fqae~~~ll~li~~slY------s~keiF--lRELISNasDA~dK~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (272)
T 3ied_A 28 NFKAEVNKVMDIIVNSLY------TDKDVF--LRELISNASDACDKKRIILENNKLIKDAEVVTNEEIKNETEKEKTENV 99 (272)
T ss_dssp ECCHHHHHHHHHHHHCTT------CCTTHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------------
T ss_pred chHHHHHHHHHHHHhhcC------CCHHHH--HHHHHHhhHHHHHHHHHhccChhhhhcccccccccccccccccccccc
Confidence 499999999999999999 999999 999999999998640
Q ss_pred ----------------CceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhc-cccccccc----------cCCcccCc
Q 003366 172 ----------------ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCM-SLGYSAKS----------KAANTIGQ 224 (826)
Q Consensus 172 ----------------At~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~L-sfG~SsK~----------~~~~~IGr 224 (826)
...+.|.+..++ ....|+|.|||+||+.++|.+.| .+++|.+. .....||+
T Consensus 100 ~~~~~~~~~~~e~~~~~~~l~I~I~~Dk--~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGq 177 (272)
T 3ied_A 100 NESTDKKENVEEEKNDIKKLIIKIKPDK--EKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQ 177 (272)
T ss_dssp --------------CGGGGCCEEEEEET--TTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGG
T ss_pred ccccccccccccccCCCCCcEEEEEEeC--CCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCc
Confidence 112467776654 45689999999999999999855 56766431 23468999
Q ss_pred ccCcccccccccCCeEEEEee
Q 003366 225 YGNGFKTSTMRLGADVIVFSC 245 (826)
Q Consensus 225 fG~GfKsAsmrLG~~v~V~SK 245 (826)
||+||++|+| +|.+|+|+||
T Consensus 178 FGVGFySaFm-VAdkV~V~Sk 197 (272)
T 3ied_A 178 FGVGFYSSFL-VSNRVEVYTK 197 (272)
T ss_dssp SCCGGGGGGG-TEEEEEEEEE
T ss_pred ccceeheeec-cCCEEEEEEc
Confidence 9999998766 9999999999
No 6
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=99.56 E-value=5.6e-16 Score=162.24 Aligned_cols=113 Identities=21% Similarity=0.384 Sum_probs=88.4
Q ss_pred CccccCCCccccccCchhhcccccccccHHHHHHHHhccchhhhhC-------------CCceEEEEEEEccCCCceEEE
Q 003366 125 GWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRMLL 191 (826)
Q Consensus 125 ~~~~~~~~l~~~~v~p~fLhSNSTSH~wpFgAIAELIDNAiDA~~~-------------gAt~V~Idi~~~~~~g~~~L~ 191 (826)
.||+++.+|.++.+|.-| ++.+.| |+|||+||+||.++ ....+.|.+..+. +...|.
T Consensus 9 ~Fqaei~~Ll~li~~~lY------sn~eif--LrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~--~~~~l~ 78 (269)
T 1qy5_A 9 AFQAEVNRMMKLIINSLY------KNKEIF--LRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDK--EKNLLH 78 (269)
T ss_dssp CCCHHHHHHHHHHHHHHT------TCTTHH--HHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEET--TTTEEE
T ss_pred eehhhHHHHHHHHHHhcc------CCchHH--HHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcC--CceEEE
Confidence 489999999999998887 666654 99999999999651 1244666665543 456899
Q ss_pred EEECCCCCCHHHHhhhc-cccccccc--------------cCCcccCcccCcccccccccCCeEEEEeeecC
Q 003366 192 IEDNGGGMNPDKMRHCM-SLGYSAKS--------------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 192 I~DNG~GMs~eeL~~~L-sfG~SsK~--------------~~~~~IGrfG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
|.|||+||+.++|.+.| .+|+|.+. .....||+||+||++++| +|.+|+|+||+.+
T Consensus 79 I~DnGiGMt~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~-va~~v~V~Sk~~~ 149 (269)
T 1qy5_A 79 VTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFL-VADKVIVTSKHNN 149 (269)
T ss_dssp EEECSCCCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGG-TEEEEEEEEECTT
T ss_pred EEECCCCCCHHHHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhh-ccceEEEEEEecC
Confidence 99999999999997754 67777321 233579999999998866 9999999999865
No 7
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=99.55 E-value=7.4e-16 Score=157.86 Aligned_cols=113 Identities=22% Similarity=0.361 Sum_probs=88.5
Q ss_pred CccccCCCccccccCchhhcccccccccHHHHHHHHhccchhhhhC-------------CCceEEEEEEEccCCCceEEE
Q 003366 125 GWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRMLL 191 (826)
Q Consensus 125 ~~~~~~~~l~~~~v~p~fLhSNSTSH~wpFgAIAELIDNAiDA~~~-------------gAt~V~Idi~~~~~~g~~~L~ 191 (826)
.||+++.+|..+-+|.-| ++.+.| |+|||+||+||.++ ....+.|.+..+. +...|.
T Consensus 13 ~Fq~ei~~ll~ll~~~lY------s~~~~~--lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~--~~~~i~ 82 (228)
T 3t0h_A 13 AFQAEIAQLMSLIINTFY------SNKEIF--LRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNK--QDRTLT 82 (228)
T ss_dssp ECCHHHHHHHHHHHHSCC------SCTTHH--HHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEET--TTTEEE
T ss_pred EEEeeHHHHHHHHHHhhc------CCcHHH--HHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeC--CeeEEE
Confidence 488888899988888888 556654 99999999999652 0124667665443 567899
Q ss_pred EEECCCCCCHHHHhhhc-cccccccc---------cCCcccCcccCcccccccccCCeEEEEeeecC
Q 003366 192 IEDNGGGMNPDKMRHCM-SLGYSAKS---------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 192 I~DNG~GMs~eeL~~~L-sfG~SsK~---------~~~~~IGrfG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
|.|||.||++++|..+| ++++|.+. .....||+||+||++++| +|.+|+|.||+.+
T Consensus 83 V~DnG~GMs~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~-vad~v~V~Sr~~~ 148 (228)
T 3t0h_A 83 IVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHND 148 (228)
T ss_dssp EEECSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTT
T ss_pred EEeCCCCCCHHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhc-cCCEEEEEEecCC
Confidence 99999999999998755 57776542 234689999999998866 9999999999864
No 8
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=99.53 E-value=8.4e-16 Score=160.10 Aligned_cols=113 Identities=22% Similarity=0.361 Sum_probs=89.8
Q ss_pred CccccCCCccccccCchhhcccccccccHHHHHHHHhccchhhhhC-------------CCceEEEEEEEccCCCceEEE
Q 003366 125 GWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRMLL 191 (826)
Q Consensus 125 ~~~~~~~~l~~~~v~p~fLhSNSTSH~wpFgAIAELIDNAiDA~~~-------------gAt~V~Idi~~~~~~g~~~L~ 191 (826)
.||+++.+|..+-++.-| ++++.| |+|||+||+||.++ ....+.|.+..+. +...|.
T Consensus 41 ~Fqaei~~Ll~ll~~~lY------s~~~if--lRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~--~~~~I~ 110 (256)
T 3o0i_A 41 AFQAEIAQLMSLIINTFY------SNKEIF--LRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNK--QDRTLT 110 (256)
T ss_dssp ECCHHHHHHHHHHHHSCC------SCTTHH--HHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEET--TTTEEE
T ss_pred EeEeeHHHHHHHHHHhcc------CCcHHH--HHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcC--CceEEE
Confidence 589999999999998888 666765 99999999999653 1124677776553 567899
Q ss_pred EEECCCCCCHHHHhhhc-cccccccc---------cCCcccCcccCcccccccccCCeEEEEeeecC
Q 003366 192 IEDNGGGMNPDKMRHCM-SLGYSAKS---------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 192 I~DNG~GMs~eeL~~~L-sfG~SsK~---------~~~~~IGrfG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
|.|||+||++++|..+| ++++|.+. .....||+||+||++++| +|.+|+|.||+.+
T Consensus 111 I~DnG~GMt~edl~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~-Vadkv~V~Sr~~~ 176 (256)
T 3o0i_A 111 IVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHND 176 (256)
T ss_dssp EEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTT
T ss_pred EecCCCCcCHHHHHHHHHhhccccccchhhhhcccCCccccCCCcchHHHhhc-cCCeEEEEEcCCC
Confidence 99999999999998755 56666442 234689999999998866 9999999999864
No 9
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=99.52 E-value=1.2e-15 Score=156.41 Aligned_cols=113 Identities=21% Similarity=0.360 Sum_probs=81.0
Q ss_pred CccccCCCccccccCchhhcccccccccHHHHHHHHhccchhhhhC-------------CCceEEEEEEEccCCCceEEE
Q 003366 125 GWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRMLL 191 (826)
Q Consensus 125 ~~~~~~~~l~~~~v~p~fLhSNSTSH~wpFgAIAELIDNAiDA~~~-------------gAt~V~Idi~~~~~~g~~~L~ 191 (826)
.||+++..+.++-++.-| ++.+ .+|+|||+||+||.++ .+..+.|.+..+. +...|.
T Consensus 13 ~F~~ei~~L~~ll~~~ly------s~~~--~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~--~~~~i~ 82 (236)
T 2gqp_A 13 AFQAEVNRMMKLIINSLY------KNKE--IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDK--EKNLLH 82 (236)
T ss_dssp CCCHHHHHHHHHHHHHTT------TCTT--HHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEET--TTTEEE
T ss_pred chhHhHHHHHHHHHHhhc------CCch--HHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcC--CCCEEE
Confidence 488888888888887766 4444 6699999999999641 1233566665443 346899
Q ss_pred EEECCCCCCHHHHhhhc-cccccccc--------------cCCcccCcccCcccccccccCCeEEEEeeecC
Q 003366 192 IEDNGGGMNPDKMRHCM-SLGYSAKS--------------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 192 I~DNG~GMs~eeL~~~L-sfG~SsK~--------------~~~~~IGrfG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
|.|||+||++++|..+| .+|+|.+. .....||+||+||++++| +|.+|+|+||+.+
T Consensus 83 I~DnG~GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~-va~~v~V~Sr~~~ 153 (236)
T 2gqp_A 83 VTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFL-VADKVIVTSKHNN 153 (236)
T ss_dssp EEECSCCCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGG-TEEEEEEEEECTT
T ss_pred EEECCcCCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhh-cCCEEEEEEeCCC
Confidence 99999999999997754 68887542 122479999999997655 8999999999864
No 10
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=99.51 E-value=2.5e-15 Score=151.82 Aligned_cols=112 Identities=20% Similarity=0.264 Sum_probs=82.7
Q ss_pred ccccCCCccccccCchhhcccccccccHHHHHHHHhccchhhhhC-------------CCceEEEEEEEccCCCceEEEE
Q 003366 126 WEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRMLLI 192 (826)
Q Consensus 126 ~~~~~~~l~~~~v~p~fLhSNSTSH~wpFgAIAELIDNAiDA~~~-------------gAt~V~Idi~~~~~~g~~~L~I 192 (826)
||+++..+.++-++.-| +..+ .||+|||+||+||.+. ....+.|.+..+. +...|.|
T Consensus 8 f~~~~~~l~~ll~~~ly------s~~~--~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~--~~~~i~I 77 (220)
T 2wer_A 8 FQAEITQLMSLIINTVY------SNKE--IFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKP--EQKVLEI 77 (220)
T ss_dssp CCHHHHHHHHHHHHHCC------SSTT--HHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEG--GGTEEEE
T ss_pred eeecHHHHHHHHHHhcc------CCch--HHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECC--CCCEEEE
Confidence 66666666666666555 3344 5799999999999652 1245566665443 4568999
Q ss_pred EECCCCCCHHHHhhhc-cccccccc---------cCCcccCcccCcccccccccCCeEEEEeeecC
Q 003366 193 EDNGGGMNPDKMRHCM-SLGYSAKS---------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 193 ~DNG~GMs~eeL~~~L-sfG~SsK~---------~~~~~IGrfG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
.|||+||++++|..++ .+|+|.+. .....||+||+||+++ +.++++|.|+||+.+
T Consensus 78 ~DnG~GMs~edl~~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~-~~~~~~v~v~S~~~~ 142 (220)
T 2wer_A 78 RDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSL-FLVADRVQVISKSND 142 (220)
T ss_dssp EECSCCCCHHHHHHHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGG-GGTEEEEEEEEECTT
T ss_pred EEcCCCCCHHHHHHHHHhHhcccchhHHHHhhccCCcccCCccchhHHHh-hhcCCeeEEEEecCC
Confidence 9999999999998754 68877532 1346899999999876 459999999999865
No 11
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=99.51 E-value=7.9e-15 Score=169.77 Aligned_cols=113 Identities=20% Similarity=0.293 Sum_probs=89.7
Q ss_pred CccccCCCccccccCchhhcccccccccHHHHHHHHhccchhhhhC-------------CCceEEEEEEEccCCCceEEE
Q 003366 125 GWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRMLL 191 (826)
Q Consensus 125 ~~~~~~~~l~~~~v~p~fLhSNSTSH~wpFgAIAELIDNAiDA~~~-------------gAt~V~Idi~~~~~~g~~~L~ 191 (826)
.||+++.++.++-+|.-| +++.+| |+|||.||+||.++ .+..+.|.+..+. +...|+
T Consensus 7 ~Fqae~~~Ll~li~~sLY------snkeif--LRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~--~~~~I~ 76 (677)
T 2cg9_A 7 EFQAEITQLMSLIINTVY------SNKEIF--LRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKP--EQKVLE 76 (677)
T ss_dssp ECCCCHHHHHHHHHHSCC------SCTTHH--HHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEG--GGTEEE
T ss_pred ehhhhHHHHHHHHHHhCC------CCchHH--HHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeC--CCCEEE
Confidence 499999999999999888 677766 99999999999741 2334566665543 346899
Q ss_pred EEECCCCCCHHHHhhhc-cccccccc---------cCCcccCcccCcccccccccCCeEEEEeeecC
Q 003366 192 IEDNGGGMNPDKMRHCM-SLGYSAKS---------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 192 I~DNG~GMs~eeL~~~L-sfG~SsK~---------~~~~~IGrfG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
|.|||+||+.++|.++| ++++|.+. .+...||+||+||++|+| ++.+|+|.||+.+
T Consensus 77 I~DnGiGMt~edl~~~l~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySaf~-vadkV~V~Sk~~~ 142 (677)
T 2cg9_A 77 IRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFL-VADRVQVISKSND 142 (677)
T ss_dssp EEECSCCCCHHHHHGGGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGGGG-TEEEEEEEEECTT
T ss_pred EEECCCCCCHHHHHHHHHhHhccccHHHHHhhhcccchhhcCCCCchhHHHhh-cCcEEEEEEccCC
Confidence 99999999999998865 56776431 123689999999998755 9999999999876
No 12
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=99.50 E-value=2.4e-15 Score=157.00 Aligned_cols=135 Identities=19% Similarity=0.241 Sum_probs=83.5
Q ss_pred cccchhhhhhhcccCCCCCC---CCCccccCCCccccccCchhhcccccccccHHHHHHHHhccchhhhhC---------
Q 003366 103 SVGLQSCKQFWKAGDYEGAP---SGGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN--------- 170 (826)
Q Consensus 103 ~~~~~~~~~fwkag~y~~~~---~~~~~~~~~~l~~~~v~p~fLhSNSTSH~wpFgAIAELIDNAiDA~~~--------- 170 (826)
++....-|++|.++.=.... .-.|+++...+..+-++.-| ..|..||+|||+||+||.++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~e~~~F~~ei~~Ll~ll~~~ly--------s~~~~~lrELI~NA~DA~ak~r~~~l~~~ 95 (264)
T 1yc1_A 24 DLYDDDDKDRWGSDQPMEEEEVETFAFQAEIAQLMSLIINTFY--------SNKEIFLRELISNSSDALDKIRYETLTDP 95 (264)
T ss_dssp -------------------CCEEEEECCHHHHHHHHHHHHCCC--------SCTTHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHhhcCCCccccccceeEEehHHHHHHHHHHHHhcc--------CCHHHHHHHHHHHHHHHhhhhhhhhccCc
Confidence 34455667899887543211 11255555555555554433 24456799999999999641
Q ss_pred ----CCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhh-ccccccccc---------cCCcccCcccCccccccccc
Q 003366 171 ----GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHC-MSLGYSAKS---------KAANTIGQYGNGFKTSTMRL 236 (826)
Q Consensus 171 ----gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~-LsfG~SsK~---------~~~~~IGrfG~GfKsAsmrL 236 (826)
..+.+.|.+..+. +...|.|.|||+||++++|..+ ..+|+|.+. .....||+||+||+++++ +
T Consensus 96 ~~~~~~~~i~I~i~~d~--~~~~I~I~DnG~GMs~edL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~-v 172 (264)
T 1yc1_A 96 SKLDSGKELHINLIPNK--QDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-V 172 (264)
T ss_dssp GGGGGCCCCCEEEEEET--TTTEEEEEECSCCCCHHHHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHH-H
T ss_pred cccCCCCeEEEEEEECC--CeeEEEEEECCcCCCHHHHHHHHHhhccccchhhhhhhccccchhhcCCCCCCcccccc-C
Confidence 1256777776543 4568999999999999999764 568877643 134689999999998766 9
Q ss_pred CCeEEEEeeecC
Q 003366 237 GADVIVFSCCCG 248 (826)
Q Consensus 237 G~~v~V~SK~~g 248 (826)
|++|+|+||+.+
T Consensus 173 a~~v~V~Sr~~~ 184 (264)
T 1yc1_A 173 AEKVTVITKHND 184 (264)
T ss_dssp EEEEEEEEECTT
T ss_pred CCEEEEEEecCC
Confidence 999999999865
No 13
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=99.48 E-value=1.9e-14 Score=166.37 Aligned_cols=114 Identities=21% Similarity=0.365 Sum_probs=71.5
Q ss_pred CCccccCCCccccccCchhhcccccccccHHHHHHHHhccchhhhhC-------------CCceEEEEEEEccCCCceEE
Q 003366 124 GGWEFSTGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRML 190 (826)
Q Consensus 124 ~~~~~~~~~l~~~~v~p~fLhSNSTSH~wpFgAIAELIDNAiDA~~~-------------gAt~V~Idi~~~~~~g~~~L 190 (826)
..||+++.++.++-+|.-| ++.+.| |+|||.||+||.++ .|..+.|.+..+. +...|
T Consensus 25 ~~Fqaei~~Ll~li~~sLY------sn~eif--LRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~--~~~~I 94 (666)
T 2o1u_A 25 FAFQAEVNRMMKLIINSLY------KNKEIF--LRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDK--EKNLL 94 (666)
T ss_dssp ---------CCSSSTTTTS------SSCTTH--HHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEET--TTTEE
T ss_pred eehHHhHHHHHHHHHHhcc------CCchHH--HHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeC--CCCEE
Confidence 3599999999999999988 666655 99999999999631 1555666665554 34689
Q ss_pred EEEECCCCCCHHHHhhhc-cccccccc--------------cCCcccCcccCcccccccccCCeEEEEeeecC
Q 003366 191 LIEDNGGGMNPDKMRHCM-SLGYSAKS--------------KAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 191 ~I~DNG~GMs~eeL~~~L-sfG~SsK~--------------~~~~~IGrfG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
+|.|||+||+.++|..+| ++++|.+. .....||+||+||++++| +|.+|+|.||+.+
T Consensus 95 ~I~DnGiGMt~edl~~~l~tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~-vAdkV~V~Sr~~~ 166 (666)
T 2o1u_A 95 HVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFL-VADKVIVTSKHNN 166 (666)
T ss_dssp EEEECSCCCCHHHHHHHTTC-------------------------------CTTGGGGG-TEEEEEEEEECTT
T ss_pred EEEECCCCCCHHHHHHHHhhhcccccHHHHHHhhhcccccccchhhccCCCcHHHhHHH-hcCEEEEEEeeCC
Confidence 999999999999998855 56766332 123579999999998755 9999999999875
No 14
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=99.45 E-value=8.7e-15 Score=149.75 Aligned_cols=94 Identities=26% Similarity=0.360 Sum_probs=72.2
Q ss_pred cHHHHHHHHhccchhhhhC-------------CCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhh-hcccccccccc
Q 003366 152 WALGAFAELLDNSLDEVCN-------------GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRH-CMSLGYSAKSK 217 (826)
Q Consensus 152 wpFgAIAELIDNAiDA~~~-------------gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~-~LsfG~SsK~~ 217 (826)
.|..||+|||+||+||.++ .|+.+.|.+..+. +...|.|.|||+||++++|.. ++.+|+|.+..
T Consensus 47 ~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~--~~~~i~I~DnG~GMs~edl~~~~~~ia~S~~~~ 124 (235)
T 2ior_A 47 NKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDK--DKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKS 124 (235)
T ss_dssp GTTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEET--TTTEEEEEECSSCCCHHHHHHHHTTCCCTTHHH
T ss_pred CHHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcC--CceEEEEEECCCCCCHHHHHHHHHHHccccccc
Confidence 4557899999999999631 2555666665443 335799999999999999987 45788875421
Q ss_pred -----------CCcccCcccCcccccccccCCeEEEEeeecC
Q 003366 218 -----------AANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 218 -----------~~~~IGrfG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
....+|+||+||+++ +.+|++|+|+||+.+
T Consensus 125 f~~~l~~~~~~~~~~iG~fGiG~~S~-~~~~~~v~V~Sr~~~ 165 (235)
T 2ior_A 125 FLESLGSDQAKDSQLIGQFGVGFYSA-FIVADKVTVRTRAAG 165 (235)
T ss_dssp HHHHCCSCHHHHHHHHTTCCCCGGGG-GGTEEEEEEEEECTT
T ss_pred hhhhhccccccccccCCCCChhHHHH-HhCcCeEEEEEecCC
Confidence 235799999999976 569999999999865
No 15
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.12 E-value=5.6e-11 Score=127.11 Aligned_cols=89 Identities=26% Similarity=0.411 Sum_probs=70.8
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhcc-ccccccccC------CcccC
Q 003366 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMS-LGYSAKSKA------ANTIG 223 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~Ls-fG~SsK~~~------~~~IG 223 (826)
..|..||+|||+||+|| +|+.|.|.+.. ++...|.|.|||.||+++++..++. |+++ |... ...+|
T Consensus 23 ~~~~~~v~ELi~NaidA---~a~~I~I~i~~---~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ts-K~~~~~d~~~~~~~G 95 (333)
T 1b63_A 23 ERPASVVKELVENSLDA---GATRIDIDIER---GGAKLIRIRDNGCGIKKDELALALARHATS-KIASLDDLEAIISLG 95 (333)
T ss_dssp SSHHHHHHHHHHHHHHT---TCSEEEEEEEG---GGTSEEEEEECSCCCCGGGHHHHHSTTCCS-SCCSHHHHHTCCSSC
T ss_pred hCHHHHHHHHHHHHHHC---CCCeEEEEEEe---CCceEEEEEEcCCCcCHHHHHHhhhccccc-CccccchhhhccccC
Confidence 67889999999999999 78988888853 3446899999999999999999764 5544 5322 24789
Q ss_pred cccCcccccccccCCeEEEEeeecC
Q 003366 224 QYGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 224 rfG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
.+|+||.+.+ .++ +++|.||+.+
T Consensus 96 ~~G~gl~si~-~vs-~l~v~s~~~~ 118 (333)
T 1b63_A 96 FRGEALASIS-SVS-RLTLTSRTAE 118 (333)
T ss_dssp CSSCHHHHHH-TTS-EEEEEEECTT
T ss_pred ccccchhhhh-cCC-cEEEEEecCC
Confidence 9999986543 355 8999999875
No 16
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.01 E-value=2.6e-10 Score=123.47 Aligned_cols=90 Identities=19% Similarity=0.308 Sum_probs=71.3
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccC------CcccCc
Q 003366 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKA------ANTIGQ 224 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~------~~~IGr 224 (826)
..|.+||.|||+||+|| +|+.|.|.+.. ++...|.|.|||.||+++++..++..++.+|... ..+.|.
T Consensus 27 ~~~~~vv~eLv~NAidA---~a~~I~I~i~~---~~~~~I~V~DnG~GI~~~~l~~~~~~~~tsK~~~~~dl~~i~s~Gf 100 (348)
T 3na3_A 27 QRPANAIKEMIENCLDA---KSTSIQVIVKE---GGLKLIQIQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGF 100 (348)
T ss_dssp CSHHHHHHHHHHHHHHT---TCSEEEEEEEG---GGTSEEEEEECSCCCCGGGGGTTTSTTCCSSCCCC---------CC
T ss_pred cCHHHHHHHHHHHHHHc---CCCEEEEEEEe---CCEEEEEEEECCcCcChHHhhhhhccccccccCcchhhhccccCCc
Confidence 67889999999999999 89989988842 3456799999999999999999877666666533 146899
Q ss_pred ccCcccccccccCCeEEEEeeecC
Q 003366 225 YGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 225 fG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
+|.||.+.+ .++ +++|.||+.+
T Consensus 101 rGeaL~Si~-avs-~l~v~sr~~~ 122 (348)
T 3na3_A 101 RGEALASIS-HVA-HVTITTKTAD 122 (348)
T ss_dssp TTCHHHHHH-HSS-EEEEEEECTT
T ss_pred CChHHHHhh-ccc-EEEEEEEECC
Confidence 999986444 466 8999999876
No 17
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.00 E-value=1.9e-10 Score=125.27 Aligned_cols=90 Identities=23% Similarity=0.296 Sum_probs=69.7
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccC------CcccCc
Q 003366 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKA------ANTIGQ 224 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~------~~~IGr 224 (826)
..|.+||.|||+||+|| +|+.|.|.+.. ++...|.|.|||.||+++++..++..++++|... -.+.|.
T Consensus 24 ~~~~~vv~eLv~NaiDA---~a~~I~I~i~~---~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~Dl~~i~t~Gf 97 (367)
T 3h4l_A 24 TDLTTAVKELVDNSIDA---NANQIEIIFKD---YGLESIECSDNGDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLGF 97 (367)
T ss_dssp CSHHHHHHHHHHHHHHT---TCSEEEEEEET---TTTSEEEEEECSCCCCGGGTTTTTCCEEC---------CCCCEEEE
T ss_pred cCHHHHHHHHHHHHHHC---CCCEEEEEEEe---CCEEEEEEEECCCCcChhHhccceeccccCcCCchhhhhhhhccCc
Confidence 67889999999999999 89988888742 4567899999999999999998876566556432 135688
Q ss_pred ccCcccccccccCCeEEEEeeecC
Q 003366 225 YGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 225 fG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
.|.||.+.+ .++ +|+|.||+.+
T Consensus 98 rGeaL~Si~-avS-~l~V~sr~~~ 119 (367)
T 3h4l_A 98 RGEALSSLC-GIA-KLSVITTTSP 119 (367)
T ss_dssp TTHHHHHHH-HSS-EEEEEEESST
T ss_pred cchHHHHhh-ccC-EEEEEEEECC
Confidence 899986544 466 7999999865
No 18
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=98.96 E-value=3.7e-10 Score=122.55 Aligned_cols=89 Identities=27% Similarity=0.375 Sum_probs=66.8
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhcc-ccccccccC------CcccC
Q 003366 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMS-LGYSAKSKA------ANTIG 223 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~Ls-fG~SsK~~~------~~~IG 223 (826)
..|..||.|||+||+|| +|+.|.|.+.. ++...|.|.|||.||+++++..++. |.++ |... ...+|
T Consensus 33 ~~~~~vl~eLv~NAiDA---~a~~I~I~i~~---~~~~~I~V~DnG~Gi~~~~l~~~f~~~~ts-K~~~~~dl~~i~s~G 105 (365)
T 1h7s_A 33 LSLSTAVKELVENSLDA---GATNIDLKLKD---YGVDLIEVSDNGCGVEEENFEGLTLKHHTS-KIQEFADLTQVETFG 105 (365)
T ss_dssp CCHHHHHHHHHHHHHHT---TCSEEEEEEEG---GGTSEEEEEECSCCCCGGGSGGGGC-----------CCTTCSEEES
T ss_pred hhHHHHHHHHHHHHHHC---CCCEEEEEEEe---CCcEEEEEEECCCCcCHHHHHHHhhhcccc-ccccccchhcccccC
Confidence 67889999999999999 88988888853 2456899999999999999998665 4443 4322 13479
Q ss_pred cccCcccccccccCCeEEEEeeecC
Q 003366 224 QYGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 224 rfG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
.+|+||.+.+ .++ +++|.||+.+
T Consensus 106 ~rG~gl~si~-~vs-~v~v~t~~~~ 128 (365)
T 1h7s_A 106 FRGEALSSLC-ALS-DVTISTCHAS 128 (365)
T ss_dssp SSSSHHHHHH-HHS-EEEEEEECTT
T ss_pred CCCchhhhhh-hhc-cEEEEEccCC
Confidence 9999986544 366 9999999875
No 19
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=98.78 E-value=3.5e-09 Score=106.36 Aligned_cols=107 Identities=26% Similarity=0.261 Sum_probs=63.8
Q ss_pred CccccccCchhhcccccccccHHHHHHHHhccchhhhhCC-CceEEEEEEEccCCCceEEEEEECCCCCCHHHH------
Q 003366 132 GMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKM------ 204 (826)
Q Consensus 132 ~l~~~~v~p~fLhSNSTSH~wpFgAIAELIDNAiDA~~~g-At~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL------ 204 (826)
++.++|.-|-..--. +.|..+|.|||+||+||...+ |+.|.|.+. . ++ .|.|.|||.||+.+++
T Consensus 1 gle~vr~rpgmyig~----~~~~~~v~Elv~NsiDa~~~g~a~~I~V~i~--~-~g--~i~V~DnG~GIp~~~~~~~~~~ 71 (201)
T 3fv5_A 1 GLEPVRRRPGMYTDT----TRPNHLGQEVIDNSVDEALAGHAKRVDVILH--A-DQ--SLEVIDDGRGMPVDIHPEEGVP 71 (201)
T ss_dssp CCHHHHHCGGGTSCT----TSTHHHHHHHHHHHHHHHHTTCCSEEEEEEC--T-TS--CEEEEECSSCCCCSBCTTCSSB
T ss_pred CchhhccCCccEECC----CChhhhhHHHHHHHHHHHhcCCCcEEEEEEe--C-CC--EEEEEECCCCcCcccccccCcc
Confidence 355666666543321 123678999999999998776 898888873 2 23 7999999999999984
Q ss_pred --hh-hccccccccccC---CcccCcccCcccccccccCCeEEEEeeecC
Q 003366 205 --RH-CMSLGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 205 --~~-~LsfG~SsK~~~---~~~IGrfG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
.- +..+-..+|... ..+.|..|.|+++.. .++..++|.|++.+
T Consensus 72 ~~e~i~~~~hatsK~~~~~~~~s~GfrGeglssin-alS~~l~v~t~~~g 120 (201)
T 3fv5_A 72 AVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVN-ALSKRVEVNVRRDG 120 (201)
T ss_dssp HHHHHHHCC---------------------CHHHH-HTEEEEEEEEEETT
T ss_pred hhheeeeeeccccCcCCCcccccCcccceecchhh-cccceEEEEEEecC
Confidence 22 223444455432 246899999997544 48889999999765
No 20
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.47 E-value=1.1e-07 Score=104.23 Aligned_cols=112 Identities=21% Similarity=0.255 Sum_probs=81.9
Q ss_pred CCCccccccCchhhcccccccc-cHHHHHHHHhccchhhhhCC-CceEEEEEEEccCCCceEEEEEECCCCCCHHHH---
Q 003366 130 TGGMDHVRVHPKFLHSNATSHK-WALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKM--- 204 (826)
Q Consensus 130 ~~~l~~~~v~p~fLhSNSTSH~-wpFgAIAELIDNAiDA~~~g-At~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL--- 204 (826)
-.++.|++.-|... --||... -|...|.||||||+||...+ |+.|.|.+.. ++ .|.|.|||.||+.++.
T Consensus 12 L~gle~vrkRPgmY-iGst~~~~gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~---~g--~I~V~DnG~GIp~~~~~~~ 85 (391)
T 1ei1_A 12 LKGLDAVRKRPGMY-IGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHA---DN--SVSVQDDGRGIPTGIHPEE 85 (391)
T ss_dssp CCTTHHHHHCTHHH-HCCSSSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECT---TS--CEEEEECSSCCCCSBCTTT
T ss_pred CchhHHHHcCCCeE-ECCCCCCcCHHHHHHHHHHhHHHHHhcCCCCEEEEEEeC---CC--EEEEEECCCCcccCccccc
Confidence 36889999988753 2233333 77889999999999997766 8888888742 23 8999999999999873
Q ss_pred -----hhhcc-ccccccccC---CcccCcccCcccccccccCCeEEEEeeecC
Q 003366 205 -----RHCMS-LGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 205 -----~~~Ls-fG~SsK~~~---~~~IGrfG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
.-+|. +...+|... ..+.|..|+|+++.. .++..++|.|++.|
T Consensus 86 ~~~~~elv~~~lhagsKf~~~~~~vSgGl~GvGls~vn-alS~~l~v~~~r~g 137 (391)
T 1ei1_A 86 GVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN-ALSQKLELVIQREG 137 (391)
T ss_dssp SSBHHHHHHHSTTEESCSSSSSCSSCSCCSSCHHHHHH-HTEEEEEEEEEETT
T ss_pred CcchHHHhheeccccCCcCCCcccccCCccccchHHHH-HhcCeEEEEEEeCC
Confidence 22443 445555432 347899999987544 48888999998754
No 21
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.37 E-value=2.9e-07 Score=100.96 Aligned_cols=107 Identities=26% Similarity=0.287 Sum_probs=78.3
Q ss_pred CCccccccCchhh-cccccccccHHHHHHHHhccchhhhhCC-CceEEEEEEEccCCCceEEEEEECCCCCCHHH-----
Q 003366 131 GGMDHVRVHPKFL-HSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDK----- 203 (826)
Q Consensus 131 ~~l~~~~v~p~fL-hSNSTSH~wpFgAIAELIDNAiDA~~~g-At~V~Idi~~~~~~g~~~L~I~DNG~GMs~ee----- 203 (826)
.++.|++.-|... -+... ..+|.||||||+||...+ |+.|.|.+.. ++ .|.|.|||.||+.++
T Consensus 14 ~gle~vr~RPgmYiGs~~~-----~~lv~ElvdNsiD~a~~g~a~~I~V~i~~---~g--~I~V~DnG~GIp~~~~~~~~ 83 (390)
T 1s16_A 14 TGLEPVRRRPGMYTDTTRP-----NHLGQEVIDNSVDEALAGHAKRVDVILHA---DQ--SLEVIDDGRGMPVDIHPEEG 83 (390)
T ss_dssp CTTHHHHHCGGGTSCTTST-----HHHHHHHHHHHHHHHHTTCCSEEEEEECT---TS--CEEEEECSSCCCCSBCTTTC
T ss_pred chhHHHhhCCceeecCCcH-----HHHHHHHHHHHHHHHhcCCCCEEEEEEec---CC--EEEEEECCCCcCcccccccC
Confidence 5788999988754 44433 367999999999987655 8888888732 23 799999999999888
Q ss_pred ---Hhhhcc-ccccccccC---CcccCcccCcccccccccCCeEEEEeeecC
Q 003366 204 ---MRHCMS-LGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 204 ---L~~~Ls-fG~SsK~~~---~~~IGrfG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
+..+|. |-..+|... ..+.|..|+|+++.. .++..++|.|++.|
T Consensus 84 ~~~~e~v~~~lhagsKf~~~~~~~sgGl~GvGls~vn-alS~~l~v~~~r~g 134 (390)
T 1s16_A 84 VPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVN-ALSKRVEVNVRRDG 134 (390)
T ss_dssp SBHHHHHHHCTTEESCSSSSSCSSCSCCSSCHHHHHH-HTEEEEEEEEEETT
T ss_pred cchhhheeeeecccCCcCCCcccccCCccccchHHHH-HhhcccEEEEEECC
Confidence 444443 444555322 347899999987544 48889999999754
No 22
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=98.35 E-value=2.6e-07 Score=94.41 Aligned_cols=112 Identities=21% Similarity=0.236 Sum_probs=73.5
Q ss_pred CCCccccccCchhh-cccccccccHHHHHHHHhccchhhhhCC-CceEEEEEEEccCCCceEEEEEECCCCCCHHHHh--
Q 003366 130 TGGMDHVRVHPKFL-HSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMR-- 205 (826)
Q Consensus 130 ~~~l~~~~v~p~fL-hSNSTSH~wpFgAIAELIDNAiDA~~~g-At~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~-- 205 (826)
-.++.+++..|... -+... ..-|..+|.||||||+|+...+ |+.|.|.+.. + ..|.|.|||.||+.+...
T Consensus 13 l~~le~vr~rPgmYiG~~~~-~~gl~~lv~ElvdNsiDea~~g~~~~I~V~i~~---~--g~i~V~DnGrGIp~~~~~~~ 86 (220)
T 4duh_A 13 LKGLDAVRKRPGMYIGDTDD-GTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHA---D--NSVSVQDDGRGIPTGIHPEE 86 (220)
T ss_dssp --CHHHHHHSTHHHHCCSSS-SHHHHHHHHHHHHHHHHHHHHSCCCEEEEEECT---T--SCEEEEECSSCCCCSEETTT
T ss_pred echhHHHHhCCceEECCCCC-cccHHHHHHHHHHHHHHHHhcCCCCEEEEEEeC---C--CcEEEEECCcCccccccccc
Confidence 36888999999764 23221 2578889999999999996554 7888887732 2 379999999999998642
Q ss_pred ------hhc-cccccccccC---CcccCcccCcccccccccCCeEEEEeeecC
Q 003366 206 ------HCM-SLGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 206 ------~~L-sfG~SsK~~~---~~~IGrfG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
-+| .+-..+|... ..+.|..|+|++... .|+..++|.+++.|
T Consensus 87 ~~~~~e~i~t~lhag~Kfd~~~yk~SgGlhGvG~svvN-AlS~~l~v~v~r~g 138 (220)
T 4duh_A 87 GVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN-ALSQKLELVIQREG 138 (220)
T ss_dssp TEEHHHHHHHSTTCSSCCCTTC--------CCCHHHHH-HTEEEEEEEEEETT
T ss_pred CcchhhheeeecccCCCcCCCccccccCccceecchhc-ccccceEEEEEECC
Confidence 223 2333444332 357899999987544 58889999998865
No 23
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=98.20 E-value=8.8e-07 Score=90.91 Aligned_cols=122 Identities=24% Similarity=0.287 Sum_probs=75.1
Q ss_pred ccCCCCCCCCCccccCCCccccccCchhh-cccccccccHHHHHHHHhccchhhhhCC-CceEEEEEEEccCCCceEEEE
Q 003366 115 AGDYEGAPSGGWEFSTGGMDHVRVHPKFL-HSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLI 192 (826)
Q Consensus 115 ag~y~~~~~~~~~~~~~~l~~~~v~p~fL-hSNSTSH~wpFgAIAELIDNAiDA~~~g-At~V~Idi~~~~~~g~~~L~I 192 (826)
+.+|+..... .-.++.|++..|... -+ |...-+...|.||||||+|+...+ |+.|.|.+ .. + ..|+|
T Consensus 8 ~~~y~~~~i~----~l~~le~vr~RPgmYiGs--~~~~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i--~~-~--g~i~V 76 (226)
T 4emv_A 8 INNYNDDAIQ----VLEGLDAVRKRPGMYIGS--TDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTI--NK-D--GSLTV 76 (226)
T ss_dssp ---------C----CCBCTHHHHHCHHHHHSC--SSHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEE--CT-T--SCEEE
T ss_pred hhcCChhhcE----EcchhHHHhhCCceEEcC--CCcccHHHHHHHHHHHHHHHHhcCCCcEEEEEE--eC-C--CeEEE
Confidence 4567765432 346889999999764 33 334556678999999999996543 67777776 32 2 37999
Q ss_pred EECCCCCCHHH-------Hhhhcc-ccccccccC---CcccCcccCcccccccccCCeEEEEeeecC
Q 003366 193 EDNGGGMNPDK-------MRHCMS-LGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 193 ~DNG~GMs~ee-------L~~~Ls-fG~SsK~~~---~~~IGrfG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
.|||.||+.+. +.-+|. +-..+|..+ ..+.|..|+|++... .|+..++|.+++.|
T Consensus 77 ~DnG~GIp~~~h~~~~~~~e~v~t~lhag~Kfd~~~yk~SgGlhGvG~svvN-ALS~~l~v~v~r~g 142 (226)
T 4emv_A 77 QDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVN-ALSSWLEVEITRDG 142 (226)
T ss_dssp EECSSCCCCSBCGGGCBHHHHHHHCBC--------------CGGGCCHHHHH-HTEEEEEEEEEETT
T ss_pred EEcCCCccccccccCceehheeEEeecccCccCccceEeccccccccchhhh-hcccceEEEEEeCC
Confidence 99999999987 443342 444444322 357899999987544 58889999999865
No 24
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.11 E-value=1.6e-06 Score=95.06 Aligned_cols=112 Identities=29% Similarity=0.309 Sum_probs=78.5
Q ss_pred CCCccccccCchhhcccccccccHHHHHHHHhccchhhhhCC-CceEEEEEEEccCCCceEEEEEECCCCCCHHHHhh--
Q 003366 130 TGGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRH-- 206 (826)
Q Consensus 130 ~~~l~~~~v~p~fLhSNSTSH~wpFgAIAELIDNAiDA~~~g-At~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~-- 206 (826)
-.++.+++..|...- -||...-....|.|||+||+|+...+ ++.|.|.+. . + ..|.|.|||.||+.+++..
T Consensus 11 l~~le~vr~rpgmyi-Gs~~~~g~~~~v~Elv~N~iD~a~~~~~~~I~V~i~--~-~--~~i~V~DnG~GIp~~~~~~~~ 84 (390)
T 1kij_A 11 LKGLEGVRHRPAMYI-GGTGVEGYHHLFKEILDNAVDEALAGYATEILVRLN--E-D--GSLTVEDNGRGIPVDLMPEEG 84 (390)
T ss_dssp CCTTHHHHHCTHHHH-SCSSHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEEC--T-T--SCEEEEECSSCCCCSEETTTT
T ss_pred cchhHHHhcCCCcEE-ccCCcchHHHHHHHHHHHHHHHhhhCCCCEEEEEEE--c-C--CEEEEEEcCCCCCHHHhhhcc
Confidence 367889999887432 23344556678999999999996443 677777763 2 2 3899999999999999765
Q ss_pred ------hcc-ccccccccC---CcccCcccCcccccccccCCeEEEEeeecC
Q 003366 207 ------CMS-LGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 207 ------~Ls-fG~SsK~~~---~~~IGrfG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
++. |-..+|... ....|..|+|+..+. .++..+.|.|++.|
T Consensus 85 ~~~~e~if~~~~~~~kf~~~~~~~s~G~~G~Gls~v~-als~~~~v~t~~~g 135 (390)
T 1kij_A 85 KPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVN-ALSEWTVVEVFREG 135 (390)
T ss_dssp EEHHHHHHHSSCEESGGGGSSCCCCSCSSTTSHHHHH-HTEEEEEEEEEETT
T ss_pred ccchhhheeeeeecccccCccccccCCCCCcceeeec-ccccceEEEEecCC
Confidence 332 333333211 236799999997554 48888999999754
No 25
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=98.09 E-value=2.3e-06 Score=93.24 Aligned_cols=106 Identities=14% Similarity=0.059 Sum_probs=70.1
Q ss_pred CccccccCchhhcccccccccHHHHHHHHhccchhhhhCC-CceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccc
Q 003366 132 GMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSL 210 (826)
Q Consensus 132 ~l~~~~v~p~fLhSNSTSH~wpFgAIAELIDNAiDA~~~g-At~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~Lsf 210 (826)
.+.+++.-|-.. --||...-|..+|.||||||+||...+ |+.|.|.+.. +| .|.|.|||.||+. |+.- .+
T Consensus 11 ~lE~vrkRPgmY-iGs~~~~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~---~g--~I~V~DnGrGIp~-e~v~--~l 81 (369)
T 3cwv_A 11 IVENVRKRPGMY-CGDVGEYGLHHLVYFLLDVAYEEARRGECRDVVLEVGG---DG--SIALFCTSRTVTA-ENLV--RV 81 (369)
T ss_dssp HHHHHHHSTHHH-HSCSSHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECT---TS--CEEEEEEESSCCH-HHHH--HH
T ss_pred HhHHHHhCCceE-EcCCCCchHHHHHHHHHhhhHhHHhhCCCCEEEEEEeC---CC--EEEEEECCCCcCH-hHee--ee
Confidence 355666666532 223444688899999999999986553 8888888742 23 7999999999999 4332 33
Q ss_pred cccccccCC---cccCcccCcccccccccCCeEEEEeeecC
Q 003366 211 GYSAKSKAA---NTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 211 G~SsK~~~~---~~IGrfG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
...+|.... +..+.-| |+++ .-.++..++|.|++.|
T Consensus 82 hagsKf~~~~~~~~y~vsG-Gls~-vnalSs~l~v~t~r~g 120 (369)
T 3cwv_A 82 ATGAGFLGRPPGDGWGWDS-MLVV-SLALSSRYQVDIWADG 120 (369)
T ss_dssp HTTTTGGGSSCCCSTTTTS-SHHH-HHHTEEEEEEEEEETT
T ss_pred ecCCCcCCCcccccccccC-HHHH-HHHhhceEEEEEEECC
Confidence 344444321 2333345 7643 3358889999999765
No 26
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=98.07 E-value=3.6e-06 Score=94.34 Aligned_cols=98 Identities=21% Similarity=0.265 Sum_probs=68.4
Q ss_pred ccHHHHHHHHhccchhhhhCCCc--eEEEEEEEcc-CCCceEEEEEECCCCCCHHHHhhhcc-ccccccccCCcccCccc
Q 003366 151 KWALGAFAELLDNSLDEVCNGAT--YSNIDMLINR-KDGSRMLLIEDNGGGMNPDKMRHCMS-LGYSAKSKAANTIGQYG 226 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt--~V~Idi~~~~-~~g~~~L~I~DNG~GMs~eeL~~~Ls-fG~SsK~~~~~~IGrfG 226 (826)
..+..+|.|||+||+||...+.. .|.|.+.... ..+...|.|.|||.||+++++..++. |...+|.......|..|
T Consensus 31 ~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~G 110 (471)
T 1mu5_A 31 RALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYG 110 (471)
T ss_dssp HHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CCCCSCCSCSCT
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCCcCcEEEEEEEECCCCCCHHHHHHHhcccccccccccccCCCCce
Confidence 56778999999999999432211 6777775421 12456899999999999999998765 44555543345678899
Q ss_pred Cccccccc---ccCCe-EEEEeeecC
Q 003366 227 NGFKTSTM---RLGAD-VIVFSCCCG 248 (826)
Q Consensus 227 ~GfKsAsm---rLG~~-v~V~SK~~g 248 (826)
+||..+.. ..|-. +.|.|+..+
T Consensus 111 LGL~iv~~l~~~~gG~~i~v~S~~~~ 136 (471)
T 1mu5_A 111 LGVKAAVLYSQMHQDKPIEIETSPVN 136 (471)
T ss_dssp TTHHHHHHHHHHHCCCCEEEEEECTT
T ss_pred eeHHHHHHHHHHhCCCceeEEEecCC
Confidence 99975433 23344 999998653
No 27
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=97.98 E-value=3.2e-06 Score=93.14 Aligned_cols=92 Identities=18% Similarity=0.142 Sum_probs=65.9
Q ss_pred ccHHHHHHHHhccchhhhh--CCCceEEEEEEEccCCCceEEEEEECCCCCCHHH--------Hhhhcc-ccccccccC-
Q 003366 151 KWALGAFAELLDNSLDEVC--NGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDK--------MRHCMS-LGYSAKSKA- 218 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~--~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~ee--------L~~~Ls-fG~SsK~~~- 218 (826)
.-+...|.||||||+||.. ..|+.|.|.+..+ + ..|.|.|||.||+.++ +.-+|. +-..+|...
T Consensus 51 ~GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~~~---~-~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf~~~ 126 (400)
T 1zxm_A 51 PGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPE---N-NLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDD 126 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETT---T-TEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCGG
T ss_pred chHHHHHHHHHhhHHhHHhhcCCCceEEEEEECC---C-CEEEEEECCCcccCccccccCccchhheeeeecccCCCCCC
Confidence 4566789999999999962 2378888887531 2 4899999999999886 232333 334444322
Q ss_pred --CcccCcccCcccccccccCCeEEEEeeec
Q 003366 219 --ANTIGQYGNGFKTSTMRLGADVIVFSCCC 247 (826)
Q Consensus 219 --~~~IGrfG~GfKsAsmrLG~~v~V~SK~~ 247 (826)
..+.|..|+|++... .|+..++|.+++.
T Consensus 127 ~ykvSgGlhGvGlsvVn-AlS~~l~v~v~~~ 156 (400)
T 1zxm_A 127 EKKVTGGRNGYGAKLCN-IFSTKFTVETASR 156 (400)
T ss_dssp GCCCCSCCSSCHHHHHH-HTEEEEEEEEEET
T ss_pred cccccCCccccceeeeE-EeccceEEEEecC
Confidence 347899999987544 5888999999864
No 28
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=97.98 E-value=5.9e-06 Score=93.94 Aligned_cols=98 Identities=21% Similarity=0.265 Sum_probs=69.1
Q ss_pred ccHHHHHHHHhccchhhhhCCCc--eEEEEEEEcc-CCCceEEEEEECCCCCCHHHHhhhcc-ccccccccCCcccCccc
Q 003366 151 KWALGAFAELLDNSLDEVCNGAT--YSNIDMLINR-KDGSRMLLIEDNGGGMNPDKMRHCMS-LGYSAKSKAANTIGQYG 226 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt--~V~Idi~~~~-~~g~~~L~I~DNG~GMs~eeL~~~Ls-fG~SsK~~~~~~IGrfG 226 (826)
..+..+|.|||+||+||...+.. .|.|.+.... ..+...|.|.|||.||+++++..++. |.+.+|.......|..|
T Consensus 30 ~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~G 109 (530)
T 2zbk_B 30 RALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYG 109 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCCCCSCCSCSSS
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCCcCceEEEEEEECCCCCCHHHHHHHhccccccCCcccccCCCCcc
Confidence 56778999999999999542210 6777775421 12456899999999999999998765 44555543345679999
Q ss_pred Cccccccc---ccCCe-EEEEeeecC
Q 003366 227 NGFKTSTM---RLGAD-VIVFSCCCG 248 (826)
Q Consensus 227 ~GfKsAsm---rLG~~-v~V~SK~~g 248 (826)
+||..+.. ..|-. +.|.|+..+
T Consensus 110 LGLsiv~~l~~~~gG~~I~V~S~~~~ 135 (530)
T 2zbk_B 110 LGVKAAVLYSQMHQDKPIEIETSPVN 135 (530)
T ss_dssp SHHHHHHHHHHHHCCCCEEEEEECTT
T ss_pred chHHHHHHHHHHhCCCceEEEEecCC
Confidence 99975432 23444 999998653
No 29
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=97.84 E-value=1.1e-05 Score=89.25 Aligned_cols=118 Identities=25% Similarity=0.312 Sum_probs=64.8
Q ss_pred cCCCCCCCCCccccCCCccccccCchhh-cccccccccHHHHHHHHhccchhhhhCC-CceEEEEEEEccCCCceEEEEE
Q 003366 116 GDYEGAPSGGWEFSTGGMDHVRVHPKFL-HSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIE 193 (826)
Q Consensus 116 g~y~~~~~~~~~~~~~~l~~~~v~p~fL-hSNSTSH~wpFgAIAELIDNAiDA~~~g-At~V~Idi~~~~~~g~~~L~I~ 193 (826)
.+|+..... .-.++.+++.-|-.. -+.. +...|.||||||+|+...+ |+.|.|.+. . + ..|+|.
T Consensus 22 ~~Y~a~~I~----vL~glE~VRkRPgMYiGst~-----~~hlv~EivdNsiDea~ag~~~~I~V~i~--~-d--gsI~V~ 87 (408)
T 3lnu_A 22 TRYNAADIE----VLSGLDPVKRRPGMYTDTAR-----PNHLAQEVIDNSVDEALAGHAKQIEVTLY--K-D--GSCEVS 87 (408)
T ss_dssp ----------------CCHHHHHCGGGTSCTTS-----THHHHHHHHHHHHHHHHTTSCCEEEEEEC--T-T--SCEEEE
T ss_pred CCcCHhHce----eccccHHHhcCCccEECCCC-----cchhhHHHHHHHHHHhhcCCCceEEEEEe--C-C--CeEEEE
Confidence 467765432 236889999988653 2322 2567999999999996553 687877773 2 2 379999
Q ss_pred ECCCCCCHHHHh--------hhc-cccccccccC---CcccCcccCcccccccccCCeEEEEeeecC
Q 003366 194 DNGGGMNPDKMR--------HCM-SLGYSAKSKA---ANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 194 DNG~GMs~eeL~--------~~L-sfG~SsK~~~---~~~IGrfG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
|||.||+.+... -+| .+-...|..+ ..+.|..|+|++..- .|+..+.|.+++.|
T Consensus 88 DnGrGIPv~~h~~~~~~~~e~i~t~lhaggKfd~~~ykvSgGlhGvG~svVN-ALS~~l~v~v~rdG 153 (408)
T 3lnu_A 88 DDGRGMPVDIHPEEKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVSVVN-ALSTKVELFIKREG 153 (408)
T ss_dssp ECSSCCCCSBCTTTCSBHHHHHHHCC--------------------CHHHHH-HTEEEEEEEEEETT
T ss_pred EcCCCCCcccccccCCcchheEEEecccCCCcCCCceeecCCccccccceeh-hccCeEEEEEEECC
Confidence 999999988632 223 2333334322 357899999987444 58899999999865
No 30
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=97.64 E-value=0.00013 Score=66.19 Aligned_cols=87 Identities=15% Similarity=0.210 Sum_probs=62.3
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCccc
Q 003366 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (826)
.....+|.+||+||+.+. ...|.|.+... ++...|.|.|||.||+.+++.+++..+++.+.. -+..|+|+.
T Consensus 43 ~~l~~il~nLl~NAi~~~---~~~i~i~~~~~--~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~----~~g~GlGL~ 113 (152)
T 1id0_A 43 NDFVEVMGNVLDNACKYC---LEFVEISARQT--DEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTL----RPGQGVGLA 113 (152)
T ss_dssp HHHHHHHHHHHHHHHHHC---SSEEEEEEEEC--SSCEEEEEEESSSCCCGGGTTGGGSCCCCTTCC----CTTCCSCHH
T ss_pred HHHHHHHHHHHHHHHHhC---cCeEEEEEEec--CCEEEEEEEeCCCCcCHHHHHHHhccceeccCC----CCCcccCHH
Confidence 345678999999999993 34677766543 456789999999999999999887655544321 245788876
Q ss_pred ccc---cccCCeEEEEeee
Q 003366 231 TST---MRLGADVIVFSCC 246 (826)
Q Consensus 231 sAs---mrLG~~v~V~SK~ 246 (826)
.+- -.+|-.+.+.+..
T Consensus 114 i~~~~~~~~gG~i~~~~~~ 132 (152)
T 1id0_A 114 VAREITEQYEGKIVAGESM 132 (152)
T ss_dssp HHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHcCCEEEEEeCC
Confidence 432 2467888887764
No 31
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=97.63 E-value=2.8e-05 Score=90.00 Aligned_cols=98 Identities=19% Similarity=0.286 Sum_probs=64.8
Q ss_pred cccHHHHHHHHhccchhhhhCCC--ceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhcc-cccccccc-CCcccCcc
Q 003366 150 HKWALGAFAELLDNSLDEVCNGA--TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMS-LGYSAKSK-AANTIGQY 225 (826)
Q Consensus 150 H~wpFgAIAELIDNAiDA~~~gA--t~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~Ls-fG~SsK~~-~~~~IGrf 225 (826)
...+..+|.|||+||+||...+. ..|.|.+.... .+...|.|.|||.||+.+++..++. |.++++.. .....|..
T Consensus 35 ~~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~~-~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~~~s~Gg~ 113 (621)
T 2q2e_B 35 PRSLITTVKEAVDNALDACEEAGILPDILVQVERTG-PDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRGQQ 113 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEET-TTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC-CCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEECC-CcEEEEEEEECCCCCCHHHHHHHhhhhccCCccccccccCCCc
Confidence 35677899999999999954211 16777765431 1346899999999999999999774 33333322 23456999
Q ss_pred cCccccccc---cc-CCeEEEEeeecC
Q 003366 226 GNGFKTSTM---RL-GADVIVFSCCCG 248 (826)
Q Consensus 226 G~GfKsAsm---rL-G~~v~V~SK~~g 248 (826)
|+|+..+.. .+ |..+.|.|+..+
T Consensus 114 GlGLsiv~~ls~~~gG~~I~V~S~~~g 140 (621)
T 2q2e_B 114 GIGISAAVLYAQMTAGRHTKILSKTSP 140 (621)
T ss_dssp SHHHHHHHHHHHHHTCCCCEEEEECSS
T ss_pred eechhhhhHHHHHhCCCceeEEeeccC
Confidence 999975432 22 333688888654
No 32
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=97.63 E-value=5.8e-05 Score=74.72 Aligned_cols=94 Identities=20% Similarity=0.250 Sum_probs=60.8
Q ss_pred ccHHHHHHHHhccchhhhhCCC--ceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCc
Q 003366 151 KWALGAFAELLDNSLDEVCNGA--TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNG 228 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gA--t~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~G 228 (826)
.+...+|..||+||+.+...+. ..|.|.+... ++...|.|.|||.||+++++.+++...+..+.......+-.|+|
T Consensus 137 ~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLG 214 (258)
T 2c2a_A 137 TRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEK--DGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLG 214 (258)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEE--TTEEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCT
T ss_pred HHHHHHHHHHHHHHHhcCcCCCCceeEEEEEecC--CCeEEEEEEecCCCCCHHHHHhhccccccCCCCCCCCCCCcchH
Confidence 4456789999999999843222 3356655432 45678999999999999999998765554332212223457888
Q ss_pred ccccc---cccCCeEEEEeee
Q 003366 229 FKTST---MRLGADVIVFSCC 246 (826)
Q Consensus 229 fKsAs---mrLG~~v~V~SK~ 246 (826)
|..+- -.+|-.+.|.|..
T Consensus 215 L~i~~~iv~~~gG~i~v~s~~ 235 (258)
T 2c2a_A 215 LAITKEIVELHGGRIWVESEV 235 (258)
T ss_dssp HHHHHHHHHHTTCEEEEEEET
T ss_pred HHHHHHHHHHcCCEEEEEecC
Confidence 86422 2568888888874
No 33
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=97.61 E-value=6.5e-05 Score=70.56 Aligned_cols=94 Identities=14% Similarity=0.202 Sum_probs=62.4
Q ss_pred cHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCcccc
Q 003366 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (826)
Q Consensus 152 wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfKs 231 (826)
....+|.+||+||+.+... ...+.|.+.....++...|.|.|||.||+.+++..++...++.........+..|+||..
T Consensus 43 ~l~~il~nLl~NAi~~~~~-~~~i~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~~~~~~~g~GlGL~i 121 (177)
T 3sl2_A 43 KITQVLDNIISNALKYSPE-GGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAI 121 (177)
T ss_dssp HHHHHHHHHHHHHHHTCCT-TCCEEEEEEEETTTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC------CCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC-CCeEEEEEEEccCCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCCCCCCCCCCCcCHHH
Confidence 3567899999999998532 245666654333456678999999999999999988765554332222334567888874
Q ss_pred ccc---ccCCeEEEEeee
Q 003366 232 STM---RLGADVIVFSCC 246 (826)
Q Consensus 232 Asm---rLG~~v~V~SK~ 246 (826)
+-. .+|-.+.+.+..
T Consensus 122 v~~~~~~~~G~i~i~~~~ 139 (177)
T 3sl2_A 122 AKEMVQAHGGDIWADSIE 139 (177)
T ss_dssp HHHHHHHTTCCEEEEEET
T ss_pred HHHHHHHcCCEEEEEecC
Confidence 332 466777777764
No 34
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=97.56 E-value=0.00015 Score=66.81 Aligned_cols=89 Identities=17% Similarity=0.180 Sum_probs=63.9
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCccc
Q 003366 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (826)
.....+|.+||+||+.+ ....|.|.+... ++...|.|.|||.||+.+++.+++...++.+.. ..-+..|+||.
T Consensus 46 ~~l~~il~nll~NAik~---~~~~I~i~~~~~--~~~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~--~~~~g~GlGL~ 118 (161)
T 1bxd_A 46 LSIKRAVANMVVNAARY---GNGWIKVSSGTE--PNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSA--RTISGTGLGLA 118 (161)
T ss_dssp HHHHHHHHHHHHHHHTT---CCSCEEEEEEEE--TTEEEEEEEEESSCSCTTGGGCSSCCCCCCSCC--CCCCCCSCCCC
T ss_pred HHHHHHHHHHHHHHHhh---cCCeEEEEEEEc--CCEEEEEEEeCCCCCCHHHHHHhCCCceeCCCC--CCCCCcccCHH
Confidence 44668899999999998 356677777543 356789999999999999999887655544321 12256788886
Q ss_pred cccc---ccCCeEEEEeee
Q 003366 231 TSTM---RLGADVIVFSCC 246 (826)
Q Consensus 231 sAsm---rLG~~v~V~SK~ 246 (826)
.+-- .+|-.+.+.+..
T Consensus 119 i~~~~~~~~gG~i~~~~~~ 137 (161)
T 1bxd_A 119 IVQRIVDNHNGMLELGTSE 137 (161)
T ss_dssp TTHHHHHHHTSEEEEEEET
T ss_pred HHHHHHHHcCCEEEEEECC
Confidence 4322 467788887763
No 35
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=97.49 E-value=0.00019 Score=64.71 Aligned_cols=86 Identities=10% Similarity=0.075 Sum_probs=62.1
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCccc
Q 003366 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (826)
.....+|.+||+||+.+.. ....|.|.+... ++...|.|.|||.||+++++.+++...++.+. +..|+|+.
T Consensus 46 ~~l~~il~nll~NAi~~~~-~~~~I~i~~~~~--~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~~------~g~GlGL~ 116 (152)
T 3a0y_A 46 TRIKQVLINLVQNAIEATG-ENGKIKITSEDM--YTKVRVSVWNSGPPIPEELKEKIFSPFFTTKT------QGTGLGLS 116 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCEEEEEEEEC--SSEEEEEEEEESCCCCGGGTTGGGSTTCCCC--------CCCCSHH
T ss_pred HHHHHHHHHHHHHHHHhcC-CCCEEEEEEEec--CCEEEEEEEeCCCCcCHHHHHhHhhhhccCCC------CCCCcCHH
Confidence 4466789999999999853 245677776543 45678999999999999999988765554431 35788987
Q ss_pred ccc--c--ccCCeEEEEee
Q 003366 231 TST--M--RLGADVIVFSC 245 (826)
Q Consensus 231 sAs--m--rLG~~v~V~SK 245 (826)
.+- + .+|-.+.+.+.
T Consensus 117 i~~~~~~~~~gg~~~~~~~ 135 (152)
T 3a0y_A 117 ICRKIIEDEHGGKIWTENR 135 (152)
T ss_dssp HHHHHHHTTTSCEEEEEEE
T ss_pred HHHHHHHHhCCcEEEEecC
Confidence 542 2 46777777665
No 36
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.48 E-value=0.00015 Score=77.71 Aligned_cols=94 Identities=18% Similarity=0.315 Sum_probs=64.6
Q ss_pred ccHHHHHHHHhccchhhhhCCC------ceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhcccccccccc-----CC
Q 003366 151 KWALGAFAELLDNSLDEVCNGA------TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSK-----AA 219 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gA------t~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~-----~~ 219 (826)
.+..-+|.+||+||+.|...+. ..|.|.+... ++...|.|.|+|.||+++++.+++...++.+.. ..
T Consensus 230 ~~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~--~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~ 307 (394)
T 2btz_A 230 SHLYHMLFELFKNAMRATVESHESSLILPPIKVMVALG--EEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGG 307 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEEC--SSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC--------
T ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCCCEEEEEEeC--CCEEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCcccCC
Confidence 3456789999999999975443 2477777543 356789999999999999999998766665432 22
Q ss_pred cccCcccCcccccc---cccCCeEEEEeee
Q 003366 220 NTIGQYGNGFKTST---MRLGADVIVFSCC 246 (826)
Q Consensus 220 ~~IGrfG~GfKsAs---mrLG~~v~V~SK~ 246 (826)
...+-+|+||..+- -.+|-++.|.|..
T Consensus 308 ~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~ 337 (394)
T 2btz_A 308 TPLAGFGYGLPISRLYAKYFQGDLQLFSME 337 (394)
T ss_dssp ------CCHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCCccCCHHHHHHHHHHhCCEEEEEecC
Confidence 34567899986432 2578899998874
No 37
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=97.46 E-value=0.00019 Score=77.49 Aligned_cols=94 Identities=17% Similarity=0.294 Sum_probs=68.6
Q ss_pred ccHHHHHHHHhccchhhhhCCC------ceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhcccccccccc------C
Q 003366 151 KWALGAFAELLDNSLDEVCNGA------TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSK------A 218 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gA------t~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~------~ 218 (826)
.+..-+|.+||+||+.|...+. ..|.|.+... ++...|.|.|+|.||+++++.+++...++.+.. .
T Consensus 242 ~~L~~il~NLl~NAik~t~~~~~~~~~~~~I~I~~~~~--~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~~~ 319 (407)
T 2q8g_A 242 SHLYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTLG--NEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSR 319 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEEC--SSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSCCS
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeC--CCEEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccccC
Confidence 3456789999999999965322 1577777543 456789999999999999999998866655432 1
Q ss_pred CcccCcccCcccccc---cccCCeEEEEeee
Q 003366 219 ANTIGQYGNGFKTST---MRLGADVIVFSCC 246 (826)
Q Consensus 219 ~~~IGrfG~GfKsAs---mrLG~~v~V~SK~ 246 (826)
....+-+|+||..+- -..|-++.|.|..
T Consensus 320 ~~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~~ 350 (407)
T 2q8g_A 320 AVPLAGFGYGLPISRLYAQYFQGDLKLYSLE 350 (407)
T ss_dssp CCCSSCTTCHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCCCcCCCHHHHHHHHHHhCCEEEEEEcC
Confidence 235577899986432 2568889998874
No 38
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=97.46 E-value=0.00012 Score=69.40 Aligned_cols=92 Identities=18% Similarity=0.243 Sum_probs=61.8
Q ss_pred cHHHHHHHHhccchhhhh-----------CCCceEEEEEEEccCCCceEEEEEECCCCCCHHHH----------------
Q 003366 152 WALGAFAELLDNSLDEVC-----------NGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKM---------------- 204 (826)
Q Consensus 152 wpFgAIAELIDNAiDA~~-----------~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL---------------- 204 (826)
....+|.+||+||+.+.. .....|.|.+... ++...|.|.|||.||+++++
T Consensus 47 ~l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~I~~~~~--~~~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~~~~ 124 (189)
T 1i58_A 47 EIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHE--GNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAA 124 (189)
T ss_dssp HHHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEEEEEEEE--TTEEEEEEEECSSCCCHHHHHHHHHHTTSSCHHHHT
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEEEEEec--CCEEEEEEEeCCCCcCHHHHhhhhhhccchhhhhhc
Confidence 345569999999999841 1245677777543 46678999999999999987
Q ss_pred --------hhhccccccccccCCcccCcccCcccccc---cccCCeEEEEeee
Q 003366 205 --------RHCMSLGYSAKSKAANTIGQYGNGFKTST---MRLGADVIVFSCC 246 (826)
Q Consensus 205 --------~~~LsfG~SsK~~~~~~IGrfG~GfKsAs---mrLG~~v~V~SK~ 246 (826)
.+++..+++.+.. ....+..|+|+..+- -.+|-.+.|.+..
T Consensus 125 ~~~~~~~~~~if~~~~~~~~~-~~~~~g~GlGL~iv~~~~~~~~G~i~i~s~~ 176 (189)
T 1i58_A 125 TLSDQEILNFLFVPGFSTKEK-VSEVSGRGVGMDVVKNVVESLNGSISIESEK 176 (189)
T ss_dssp TCCHHHHHGGGGSTTCSHHHH-HHGGGTCCCHHHHHHHHHHHTTCEEEEEEET
T ss_pred ccchhhhHHHhcCCccccccc-CCCCCCCccCHHHHHHHHHHcCCEEEEEeCC
Confidence 4455545554321 112345788986432 2567888888764
No 39
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=97.41 E-value=0.0002 Score=76.93 Aligned_cols=94 Identities=18% Similarity=0.297 Sum_probs=68.4
Q ss_pred ccHHHHHHHHhccchhhhhCCC------ceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhcccccccccc------C
Q 003366 151 KWALGAFAELLDNSLDEVCNGA------TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSK------A 218 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gA------t~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~------~ 218 (826)
.+...+|.+||+||+.|...+. ..|.|.+... ++...|.|.|+|.||+++++.+++...++.+.. .
T Consensus 229 ~~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~--~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~~~ 306 (394)
T 2e0a_A 229 SHLHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVLG--KEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSR 306 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEEC--SSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC------
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCCCCEEEEEEeC--CCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCcCC
Confidence 3456789999999999965322 1477777543 456789999999999999999998766665432 2
Q ss_pred CcccCcccCcccccc---cccCCeEEEEeee
Q 003366 219 ANTIGQYGNGFKTST---MRLGADVIVFSCC 246 (826)
Q Consensus 219 ~~~IGrfG~GfKsAs---mrLG~~v~V~SK~ 246 (826)
....+-+|+||..+- -..|-++.|.|..
T Consensus 307 ~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~ 337 (394)
T 2e0a_A 307 NAPLAGFGYGLPISRLYAKYFQGDLNLYSLS 337 (394)
T ss_dssp CCCSSCSSCHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCCCcccCHHHHHHHHHHhCCEEEEEecC
Confidence 234577899986432 2578889998874
No 40
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.33 E-value=0.00031 Score=69.36 Aligned_cols=87 Identities=18% Similarity=0.107 Sum_probs=63.3
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCccc
Q 003366 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (826)
.+...+|.+||+||+.+... ...|.|.+... ++...|.|.|||.||+++.+.+.+...++.+. +..|+|+.
T Consensus 154 ~~l~~il~nLl~NA~~~~~~-~~~I~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~------~g~GlGL~ 224 (268)
T 4ew8_A 154 KRLAQTLDHLVENALRQTPP-GGRVTLSARRA--LGEVRLDVSDTGRGVPFHVQAHIFDRFVGRDR------GGPGLGLA 224 (268)
T ss_dssp HHHHHHHHHHHHHHHHHSCT-TCEEEEEEEEC--SSEEEEEEEESSCCCCHHHHTTTTSTTCCCSS------CCCTTHHH
T ss_pred HHHHHHHHHHHHHHHHhCCC-CCEEEEEEEec--CCEEEEEEEcCCCCCCHHHHHHHHHHHhcCCC------CCCcccHH
Confidence 34667899999999999432 25677777543 46678999999999999999988765554432 35688876
Q ss_pred ccc---cccCCeEEEEeee
Q 003366 231 TST---MRLGADVIVFSCC 246 (826)
Q Consensus 231 sAs---mrLG~~v~V~SK~ 246 (826)
.+- -.+|-.+.|.+..
T Consensus 225 i~~~~~~~~gG~i~i~s~~ 243 (268)
T 4ew8_A 225 LVKALVELHGGWVALESEP 243 (268)
T ss_dssp HHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHcCCEEEEEecC
Confidence 422 2577888887764
No 41
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=97.32 E-value=0.00026 Score=76.89 Aligned_cols=94 Identities=19% Similarity=0.272 Sum_probs=64.2
Q ss_pred ccHHHHHHHHhccchhhhhCC-------CceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhcccccccccc------
Q 003366 151 KWALGAFAELLDNSLDEVCNG-------ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSK------ 217 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~g-------At~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~------ 217 (826)
.+..-+|.+||+||+.|...+ ...|.|.+... ++...|.|.|+|.||+++++.+++...++.+..
T Consensus 252 ~~L~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~--~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~~~ 329 (419)
T 1y8o_A 252 SHLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLG--KEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPT 329 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEEC--SSEEEEEEEECSCCCCHHHHGGGGCTTTC----------
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeC--CCEEEEEEEECCCCCCHHHHHHHhCcccccCCCCCcccc
Confidence 345578999999999996432 12577777543 356789999999999999999998766655432
Q ss_pred CCcccCcccCcccccc---cccCCeEEEEeee
Q 003366 218 AANTIGQYGNGFKTST---MRLGADVIVFSCC 246 (826)
Q Consensus 218 ~~~~IGrfG~GfKsAs---mrLG~~v~V~SK~ 246 (826)
.....+-+|+||..+- -..|-++.|.|..
T Consensus 330 ~~~~~~G~GLGL~I~k~iv~~~gG~I~v~s~~ 361 (419)
T 1y8o_A 330 RAAPLAGFGYGLPISRLYARYFQGDLKLYSME 361 (419)
T ss_dssp ---CC--CTTHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCcCCeecCHHHHHHHHHHhCCEEEEEecC
Confidence 1234567899986432 2568889998875
No 42
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=97.31 E-value=0.00033 Score=63.68 Aligned_cols=89 Identities=13% Similarity=0.100 Sum_probs=57.4
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCccc
Q 003366 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (826)
.....+|.+||+||+.+.. +..|.|.+... ++...|.|.|||.||+++++.+++...+.... ..-+..|+|+.
T Consensus 45 ~~l~~il~nLl~NA~~~~~--~~~I~i~~~~~--~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~---~~~~g~GlGL~ 117 (150)
T 1ysr_A 45 AGLRLAVDNAIANAVKHGG--ATLVQLSAVSS--RAGVEIAIDDNGSGVPEGERQVVFERFSRGST---ASHSGSGLGLA 117 (150)
T ss_dssp HHHHHHHHHHHHHHHHTTC--CSEEEEEEEEE--TTEEEEEEEESSSCCCGGGHHHHHTSCC--------------CCCH
T ss_pred HHHHHHHHHHHHHHHhcCC--CcEEEEEEEec--CCEEEEEEEECCCCCCHHHHHHHhcccccCCC---CCCCCCCcCHH
Confidence 3456789999999999842 33677766543 35678999999999999999988764432211 11245688886
Q ss_pred ccc---cccCCeEEEEeee
Q 003366 231 TST---MRLGADVIVFSCC 246 (826)
Q Consensus 231 sAs---mrLG~~v~V~SK~ 246 (826)
.+- -.+|-.+.+.+..
T Consensus 118 i~~~~~~~~gG~i~~~~~~ 136 (150)
T 1ysr_A 118 LVAQQAQLHGGTASLENSP 136 (150)
T ss_dssp HHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHcCCEEEEeecC
Confidence 422 2467788887764
No 43
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=97.29 E-value=0.00016 Score=65.63 Aligned_cols=87 Identities=15% Similarity=0.122 Sum_probs=47.5
Q ss_pred cHHHHHHHHhccchhhhhCCCceEEEEEEEccCCC----------ceEEEEEECCCCCCHHHHhhhccccccccccCCcc
Q 003366 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDG----------SRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANT 221 (826)
Q Consensus 152 wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g----------~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~ 221 (826)
....+|.+||+||+.+.......|.|.+.... + ...|.|.|||.||+++++.+.+...++.+.
T Consensus 48 ~l~~il~nLl~NAik~~~~~~~~I~i~~~~~~--~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~----- 120 (160)
T 1r62_A 48 QIEQVLLNIVRNALQALGPEGGEIILRTRTAF--QLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGRE----- 120 (160)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEE--EEEETTEEEEEEEEEEEEEECTTC----------------------
T ss_pred HHHHHHHHHHHHHHHHhhccCCeEEEEEeccc--cccccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCC-----
Confidence 45678999999999985421456777664332 2 457999999999999999988765554432
Q ss_pred cCcccCcccccc---cccCCeEEEEeee
Q 003366 222 IGQYGNGFKTST---MRLGADVIVFSCC 246 (826)
Q Consensus 222 IGrfG~GfKsAs---mrLG~~v~V~SK~ 246 (826)
+..|+|+..+- -.+|-.+.+.+..
T Consensus 121 -~g~GlGL~i~~~~~~~~gG~l~i~s~~ 147 (160)
T 1r62_A 121 -GGTGLGLSIARNLIDQHSGKIEFTSWP 147 (160)
T ss_dssp ----CHHHHHHHHHHHHTTCEEEEEEET
T ss_pred -CCCccCHHHHHHHHHHCCCeEEEEeCC
Confidence 34788876432 2467788887763
No 44
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=97.29 E-value=0.00043 Score=66.89 Aligned_cols=88 Identities=14% Similarity=0.222 Sum_probs=64.1
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCccc
Q 003366 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (826)
.....+|.+||+||+.+.. .+..|.|.+... ++...|.|.|||.||+++++.+++...++.+. .+..|+|+.
T Consensus 122 ~~l~~il~nLl~NA~~~~~-~~~~i~i~~~~~--~~~~~i~i~D~G~gi~~~~~~~if~~~~~~~~-----~~g~GlGL~ 193 (244)
T 3d36_A 122 EKFRQCLLNVMKNAIEAMP-NGGTLQVYVSID--NGRVLIRIADTGVGMTKEQLERLGEPYFTTKG-----VKGTGLGMM 193 (244)
T ss_dssp HHHHHHHHHHHHHHHHTCT-TCEEEEEEEEEE--TTEEEEEEEECSSCCCHHHHHHTTSTTCCSSG-----GGCCSCHHH
T ss_pred HHHHHHHHHHHHHHHHhcc-CCCeEEEEEEEe--CCEEEEEEEecCCCCCHHHHHHHhcccccCCC-----CCCcchhHH
Confidence 4466889999999999843 245677776543 46678999999999999999998776655441 234688886
Q ss_pred ccc---cccCCeEEEEeee
Q 003366 231 TST---MRLGADVIVFSCC 246 (826)
Q Consensus 231 sAs---mrLG~~v~V~SK~ 246 (826)
.+- -.+|-.+.+.+..
T Consensus 194 i~~~i~~~~gG~i~~~~~~ 212 (244)
T 3d36_A 194 VVYRIIESMNGTIRIESEI 212 (244)
T ss_dssp HHHHHHHHTTCEEEEEEET
T ss_pred HHHHHHHHcCCEEEEEecC
Confidence 432 2467888887764
No 45
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=97.27 E-value=0.00013 Score=73.28 Aligned_cols=99 Identities=25% Similarity=0.320 Sum_probs=62.4
Q ss_pred CccccccCchhhcccccccccHHHHHHHHhccchhhhhCC-CceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccc
Q 003366 132 GMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSL 210 (826)
Q Consensus 132 ~l~~~~v~p~fLhSNSTSH~wpFgAIAELIDNAiDA~~~g-At~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~Lsf 210 (826)
++.|++.-|-..- -||...-+...|.||||||+|+...+ |+.|.|.+.. + ..|.|.|||.||+.+.-.
T Consensus 12 ~le~vr~RPgmYi-Gs~~~~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~~---~--g~i~V~DnG~Gip~~~h~----- 80 (198)
T 3ttz_A 12 GLEAVRKRPGMYI-GSTSERGLHHLVWEIVDNSIDEALAGYANQIEVVIEK---D--NWIKVTDNGRGIPVDIQE----- 80 (198)
T ss_dssp HHHHHHHSHHHHH-SCSSHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEG---G--GEEEEEECSSCCCCSBCT-----
T ss_pred chHHHhcCCCcEE-CCCCCcchHHHHHHHHHHHHhHHhcCCCcEEEEEEeC---C--CeEEEEECCCCccccccC-----
Confidence 4555666554321 13334667788999999999976556 8888888743 2 289999999999987211
Q ss_pred cccccccCCcccCcccCcccccccccCCeEEEEeeecC
Q 003366 211 GYSAKSKAANTIGQYGNGFKTSTMRLGADVIVFSCCCG 248 (826)
Q Consensus 211 G~SsK~~~~~~IGrfG~GfKsAsmrLG~~v~V~SK~~g 248 (826)
.+|......+ |+ -++.-.|+..+.|.+++.|
T Consensus 81 --~~~~~~~e~i--~t---~SvVNALS~~l~v~v~r~g 111 (198)
T 3ttz_A 81 --KMGRPAVEVI--LT---SSVVNALSQDLEVYVHRNE 111 (198)
T ss_dssp --TTSSBHHHHH--HH---TCHHHHTEEEEEEEEEETT
T ss_pred --cCCCcccccc--ce---eEehhhhcCeEEEEEEECC
Confidence 1111111111 22 2222367789999998865
No 46
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=97.23 E-value=0.00026 Score=75.64 Aligned_cols=94 Identities=21% Similarity=0.291 Sum_probs=66.8
Q ss_pred ccHHHHHHHHhccchhhhhCCC-------ceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccC-----
Q 003366 151 KWALGAFAELLDNSLDEVCNGA-------TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKA----- 218 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gA-------t~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~----- 218 (826)
....-+|.+||+||+.|...+. ..|.|.+... ++...|.|.|+|.||+++++.+++...++.+...
T Consensus 237 ~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~--~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~ 314 (388)
T 1gkz_A 237 MPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANN--DVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPR 314 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEEC--SSEEEEEEECCSCCCCTTTTTTTTSTTCCCC--------
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEeC--CCEEEEEEEEeCCCcCHHHHHHhcCcccccCCCcccccc
Confidence 4456789999999999975432 1577777543 4567899999999999999999887666554321
Q ss_pred ---------------CcccCcccCcccccc---cccCCeEEEEeee
Q 003366 219 ---------------ANTIGQYGNGFKTST---MRLGADVIVFSCC 246 (826)
Q Consensus 219 ---------------~~~IGrfG~GfKsAs---mrLG~~v~V~SK~ 246 (826)
....+-+|+||..+- -.+|-++.|.|..
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~gG~i~v~s~~ 360 (388)
T 1gkz_A 315 ISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQ 360 (388)
T ss_dssp -----------------CCSCSSCHHHHHHHHHHHTTCEEEEEEET
T ss_pred cccchhhcccccccCCCCcCCccCCHHHHHHHHHHhCCEEEEEecC
Confidence 123467899986432 2578889998874
No 47
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=97.21 E-value=0.00061 Score=62.18 Aligned_cols=86 Identities=22% Similarity=0.294 Sum_probs=55.4
Q ss_pred cHHHHHHHHhccchhhhhCC--CceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCcc
Q 003366 152 WALGAFAELLDNSLDEVCNG--ATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGF 229 (826)
Q Consensus 152 wpFgAIAELIDNAiDA~~~g--At~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~Gf 229 (826)
.+.-+|.|||+||+.+.... ...|.|.+... ++...|.|.|||.||+ ++.+.+...++.+. ..+..|+|+
T Consensus 39 ~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~--~~~~~i~V~D~G~g~~--~~~~~~~~~~~~~~----~~~~~GlGL 110 (145)
T 1th8_A 39 EIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIE--DGVVHLTVRDEGVGIP--DIEEARQPLFTTKP----ELERSGMGF 110 (145)
T ss_dssp HHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEE--TTEEEEEEEECSSCCS--CHHHHTCCC-----------CCCSCHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEe--CCEEEEEEEECCCCcC--hHHHhhcccccCCC----CCCCCcchH
Confidence 45578999999999873221 25677776543 4567899999999999 66666654444332 224568888
Q ss_pred cccccccCCeEEEEeee
Q 003366 230 KTSTMRLGADVIVFSCC 246 (826)
Q Consensus 230 KsAsmrLG~~v~V~SK~ 246 (826)
..+- ++...+.+.+..
T Consensus 111 ~iv~-~~~~~i~~~~~~ 126 (145)
T 1th8_A 111 TIME-NFMDEVIVESEV 126 (145)
T ss_dssp HHHH-HHSSEEEEEEET
T ss_pred HHHH-HHHheEEEEeCC
Confidence 7544 345577776654
No 48
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=97.15 E-value=0.00044 Score=62.10 Aligned_cols=74 Identities=11% Similarity=0.035 Sum_probs=53.7
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCccc
Q 003366 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (826)
...+-++.|||+||+.+. .+..|.|.+... ++...|.|.|||.||+++++ +..|+|+.
T Consensus 39 ~~l~~il~nll~Na~k~~--~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~------------------~g~GlGL~ 96 (128)
T 3ehg_A 39 NILSMCLKEAVTNVVKHS--QAKTCRVDIQQL--WKEVVITVSDDGTFKGEENS------------------FSKGHGLL 96 (128)
T ss_dssp HHHHHHHHHHHHHHHHHT--CCSEEEEEEEEE--TTEEEEEEEESSCCCSCSSC------------------CCTTSHHH
T ss_pred HHHHHHHHHHHHHHHhcC--CCcEEEEEEEEe--CCEEEEEEEECCcCcCcccC------------------CCCCccHH
Confidence 344568999999999983 356788877553 45678999999999998865 22478875
Q ss_pred ccc---cccCCeEEEEeee
Q 003366 231 TST---MRLGADVIVFSCC 246 (826)
Q Consensus 231 sAs---mrLG~~v~V~SK~ 246 (826)
.+- -.+|-.+.+.+..
T Consensus 97 ~~~~~~~~~gG~i~~~s~~ 115 (128)
T 3ehg_A 97 GMRERLEFANGSLHIDTEN 115 (128)
T ss_dssp HHHHHHHHTTCEEEEECSS
T ss_pred HHHHHHHHcCCEEEEEeCC
Confidence 422 2467788887765
No 49
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=97.13 E-value=0.00027 Score=78.45 Aligned_cols=89 Identities=17% Similarity=0.221 Sum_probs=62.0
Q ss_pred HHHHHHHHhccchhhhh--CCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhh--------hcc-ccccccccC---
Q 003366 153 ALGAFAELLDNSLDEVC--NGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRH--------CMS-LGYSAKSKA--- 218 (826)
Q Consensus 153 pFgAIAELIDNAiDA~~--~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~--------~Ls-fG~SsK~~~--- 218 (826)
+.-.|-|+||||+|+.. ..|+.|.|.+..+ + ..|+|.|||.||+.+.... +|. +-...|...
T Consensus 65 L~~lv~EivdNaiDe~~~~g~~~~I~V~i~~d---~-~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd~~~y 140 (418)
T 1pvg_A 65 LFKIFDEILVNAADNKVRDPSMKRIDVNIHAE---E-HTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEK 140 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCEEEEEEETT---T-TEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTTSC
T ss_pred HHHHHHHHHhCHHHHHHhcCCCCEEEEEEECC---C-CEEEEEECCCcccCcccccCCcccceEEEEEEecccccCCCce
Confidence 34589999999999962 2368888887531 2 4799999999998775332 222 333344322
Q ss_pred CcccCcccCcccccccccCCeEEEEeee
Q 003366 219 ANTIGQYGNGFKTSTMRLGADVIVFSCC 246 (826)
Q Consensus 219 ~~~IGrfG~GfKsAsmrLG~~v~V~SK~ 246 (826)
..+-|..|+|.+ +.=.|+..+.|.+++
T Consensus 141 kvSGGLhGVG~S-vVNALS~~l~V~v~r 167 (418)
T 1pvg_A 141 KVTGGRNGYGAK-LCNIFSTEFILETAD 167 (418)
T ss_dssp CCCSCCSSCHHH-HHHHTEEEEEEEEEE
T ss_pred eccCCccceeee-eeeeccceEEEEEEE
Confidence 346799999976 444688999999985
No 50
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=96.99 E-value=0.0011 Score=63.64 Aligned_cols=72 Identities=11% Similarity=0.041 Sum_probs=48.3
Q ss_pred HHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCccccc
Q 003366 153 ALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKTS 232 (826)
Q Consensus 153 pFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfKsA 232 (826)
.+.++.|||+||+.+. .+..|.|.+... ++...|.|.|||.||+++.+ +..|+|+..+
T Consensus 131 l~~il~nll~Na~k~~--~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~------------------~g~GlGL~~~ 188 (218)
T 3ehh_A 131 LSMCLKEAVTNVVKHS--QAKTCRVDIQQL--WKEVVITVSDDGTFKGEENS------------------FSKGHGLLGM 188 (218)
T ss_dssp HHHHHHHHHHHHHHHT--CCSEEEEEEEEE--TTEEEEEEEESSCCCC--------------------------CHHHHH
T ss_pred HHHHHHHHHHHHHHhC--CCCEEEEEEEEe--CCEEEEEEEECCcCCCCCCC------------------CCCCCCHHHH
Confidence 4568999999999984 456788877553 46678999999999999876 2247777532
Q ss_pred c---cccCCeEEEEeee
Q 003366 233 T---MRLGADVIVFSCC 246 (826)
Q Consensus 233 s---mrLG~~v~V~SK~ 246 (826)
- -.+|-.+.|.|..
T Consensus 189 ~~~v~~~gG~i~~~s~~ 205 (218)
T 3ehh_A 189 RERLEFANGSLHIDTEN 205 (218)
T ss_dssp HHHHHHTTCEEEEECSS
T ss_pred HHHHHHcCCEEEEeCCC
Confidence 2 2567788887765
No 51
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=96.97 E-value=0.0012 Score=71.18 Aligned_cols=91 Identities=19% Similarity=0.245 Sum_probs=58.3
Q ss_pred HHHHHHHHhccchhhhh-----------CCCceEEEEEEEccCCCceEEEEEECCCCCCHHHH-----------------
Q 003366 153 ALGAFAELLDNSLDEVC-----------NGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKM----------------- 204 (826)
Q Consensus 153 pFgAIAELIDNAiDA~~-----------~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL----------------- 204 (826)
...++.+||.||+++.. .....|.|.+... ++.-.|.|.|||.||+++.+
T Consensus 107 l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~~--~~~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~~~~ 184 (379)
T 1b3q_A 107 IGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHE--GNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAAT 184 (379)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEEE--TTEEEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTTT
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEEe--CCEEEEEEEECCCCCCHHHHHHHHHHcCCCChhhhhc
Confidence 44569999999999931 1234567766543 46778999999999999998
Q ss_pred -------hhhccccccccccCCcccCcccCccccc---ccccCCeEEEEeee
Q 003366 205 -------RHCMSLGYSAKSKAANTIGQYGNGFKTS---TMRLGADVIVFSCC 246 (826)
Q Consensus 205 -------~~~LsfG~SsK~~~~~~IGrfG~GfKsA---smrLG~~v~V~SK~ 246 (826)
...+..|++.+.. ....+-.|+|+..+ .-.+|-.+.|.|..
T Consensus 185 ~~~~~~~~~iF~p~fst~~~-~~~~~G~GlGL~iv~~~v~~~gG~i~v~s~~ 235 (379)
T 1b3q_A 185 LSDQEILNFLFVPGFSTKEK-VSEVSGRGVGMDVVKNVVESLNGSMGIESEK 235 (379)
T ss_dssp SCTHHHHSGGGSTTCC------------CCCSHHHHHHHHHTTCEEEEEEET
T ss_pred CCHHHHHHHhcCCCCccCCc-cCCCCCccccHHHHHHHHHHCCCEEEEEEcC
Confidence 4455667776532 23456679998632 22578889998874
No 52
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=96.96 E-value=0.00035 Score=66.57 Aligned_cols=86 Identities=19% Similarity=0.210 Sum_probs=40.9
Q ss_pred cHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCcccc
Q 003366 152 WALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFKT 231 (826)
Q Consensus 152 wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfKs 231 (826)
....+|.+||+||+.+.. ....|.|.+ .. . .|.|.|||.||+++++.+.+...++.+. ..-+..|+|+..
T Consensus 117 ~l~~il~nLl~NAi~~~~-~~~~i~i~~--~~--~--~i~V~D~G~Gi~~~~~~~if~~f~~~~~---~~~~g~GlGL~i 186 (222)
T 3jz3_A 117 LLSLLVRNLLDNAVRYSP-QGSVVDVTL--NA--D--NFIVRDNGPGVTPEALARIGERFYRPPG---QTATGSGLGLSI 186 (222)
T ss_dssp HHHHHHHHHHHHHHHTCC-TTCEEEEEE--CS--S--EEEEECSCC-----------------------------CTHHH
T ss_pred HHHHHHHHHHHHHHHcCC-CCCeEEEEE--cc--C--eEEEEECCCCCCHHHHHHHHhhhccCCC---CCCCcccccHHH
Confidence 456789999999999943 234455555 22 1 2999999999999999988765444321 123457888864
Q ss_pred cc---cccCCeEEEEeeec
Q 003366 232 ST---MRLGADVIVFSCCC 247 (826)
Q Consensus 232 As---mrLG~~v~V~SK~~ 247 (826)
+- -.+|-.+.|.+...
T Consensus 187 ~~~i~~~~gG~i~i~s~~~ 205 (222)
T 3jz3_A 187 VQRIAKLHGMNVEFGNAEQ 205 (222)
T ss_dssp HHHHHHHTTCEEECCBCTT
T ss_pred HHHHHHHcCCEEEEEcCCC
Confidence 32 25677887777643
No 53
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=96.93 E-value=0.00087 Score=68.25 Aligned_cols=86 Identities=10% Similarity=0.075 Sum_probs=59.1
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCccc
Q 003366 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (826)
.....+|.+||+||+.+.. .+..|.|.+... ++...|.|.|||.||+++.+.+.+...++.+. +..|+|+.
T Consensus 243 ~~l~~vl~nLl~NA~k~~~-~~~~i~i~~~~~--~~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~~------~g~GlGL~ 313 (349)
T 3a0r_A 243 TRIKQVLINLVQNAIEATG-ENGKIKITSEDM--YTKVRVSVWNSGPPIPEELKEKIFSPFFTTKT------QGTGLGLS 313 (349)
T ss_dssp HHHHHHHHHHHTHHHHTTC-TTCCEEEEEEEE--TTEEEEEEEEESCCCCGGGGTTTSSSCCCC------------CCCT
T ss_pred HHHHHHHHHHHHHHHHhcc-CCCEEEEEEEec--CCEEEEEEEECCCCCChHHHhhcCCCCccCCC------CCccchHH
Confidence 4567889999999999953 245677777543 46678999999999999999988876665542 24588876
Q ss_pred ccc--c--ccCCeEEEEee
Q 003366 231 TST--M--RLGADVIVFSC 245 (826)
Q Consensus 231 sAs--m--rLG~~v~V~SK 245 (826)
.+- + ..|-.+.+-+.
T Consensus 314 i~~~~v~~~~gg~i~~~~~ 332 (349)
T 3a0r_A 314 ICRKIIEDEHGGKIWTENR 332 (349)
T ss_dssp HHHHHHHHTTCSBCCEEEC
T ss_pred HHHHHHHHhCCCEEEEEeC
Confidence 431 1 36666666665
No 54
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=96.75 E-value=0.0016 Score=57.70 Aligned_cols=71 Identities=20% Similarity=0.287 Sum_probs=52.8
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCccc
Q 003366 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (826)
.+...+|.+||+||+.+. .+..|.|.+... ++ ..|.|.|||.||+++. .|+|+.
T Consensus 42 ~~l~~il~nll~NA~k~~--~~~~i~i~~~~~--~~-~~i~v~D~G~gi~~~~---------------------~GlGL~ 95 (129)
T 3zxo_A 42 DQAEAVVREAVSNAVRHA--AASTLTVRVKVD--DD-LCIEVTDNGRGMPDEF---------------------TGSGLT 95 (129)
T ss_dssp HHHHHHHHHHHHHCCCCS--SCCEEEEEEEES--SE-EEEEEEECCCCCTTTT---------------------CSHHHH
T ss_pred HHHHHHHHHHHHHHHHhC--CCceEEEEEEEc--CC-EEEEEecCCCCCCccc---------------------CCcCHH
Confidence 456778999999999984 356788877654 34 7899999999998875 377875
Q ss_pred ccc---cccCCeEEEEeeec
Q 003366 231 TST---MRLGADVIVFSCCC 247 (826)
Q Consensus 231 sAs---mrLG~~v~V~SK~~ 247 (826)
.+. -.+|-.+.+.+...
T Consensus 96 i~~~~~~~~gG~i~~~~~~~ 115 (129)
T 3zxo_A 96 NLRQRAEQAGGEFTLASMPG 115 (129)
T ss_dssp HHHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHHcCCEEEEeeCCC
Confidence 322 24677788877653
No 55
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=96.04 E-value=0.0065 Score=53.45 Aligned_cols=70 Identities=20% Similarity=0.265 Sum_probs=50.8
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCccc
Q 003366 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGFK 230 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~GfK 230 (826)
.....++.|||+||+.+. .+..|.|.+... ++ ..|.|.|||.||+++. -|+|+.
T Consensus 38 ~~l~~il~nll~Na~k~~--~~~~i~i~~~~~--~~-~~i~v~D~G~gi~~~~---------------------~GlGL~ 91 (124)
T 3zxq_A 38 NHAEAVLREAVSNAVRHA--NATSLAINVSVE--DD-VRVEVVDDGVGISGDI---------------------TESGLR 91 (124)
T ss_dssp HHHHHHHHHHHHHHHTCT--TCCEEEEEEEEE--EE-EEEEEEECCCSSCGGG---------------------SHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC--CCCEEEEEEEeC--CC-EEEEEEECCCCCCccc---------------------cccCHH
Confidence 455678999999999984 356777777654 34 7899999999999886 177765
Q ss_pred ccc---cccCCeEEEEeee
Q 003366 231 TST---MRLGADVIVFSCC 246 (826)
Q Consensus 231 sAs---mrLG~~v~V~SK~ 246 (826)
.+- -.+|-.+.+.+..
T Consensus 92 ~~~~~~~~~gG~i~~~~~~ 110 (124)
T 3zxq_A 92 NLRQRADDAGGEFTVENMP 110 (124)
T ss_dssp HHHHHHHHHTCEEEEEECT
T ss_pred HHHHHHHHhCCEEEEEEcC
Confidence 322 2466777777764
No 56
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.06 E-value=0.4 Score=53.71 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=16.7
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhH
Q 003366 720 GANLGQLKQENHELKKRLEKKEGEL 744 (826)
Q Consensus 720 ~~~~~~~~~e~~~~~~~~~~~~~~~ 744 (826)
+..+.+++.+...|++++...|+.+
T Consensus 455 ~~e~~~~~~~i~~l~~~~~~~~~~l 479 (597)
T 3oja_B 455 EAEVNELRAEVQQLTNEQIQQEQLL 479 (597)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346677777777777777666664
No 57
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=93.62 E-value=0.077 Score=53.22 Aligned_cols=86 Identities=12% Similarity=0.086 Sum_probs=56.2
Q ss_pred ccHHHHHHHHhccchhhhhCCCceEEEEEEEccCCCceEEEEEECCCC--CCHHHHhhhccccccccccCCcccCcccCc
Q 003366 151 KWALGAFAELLDNSLDEVCNGATYSNIDMLINRKDGSRMLLIEDNGGG--MNPDKMRHCMSLGYSAKSKAANTIGQYGNG 228 (826)
Q Consensus 151 ~wpFgAIAELIDNAiDA~~~gAt~V~Idi~~~~~~g~~~L~I~DNG~G--Ms~eeL~~~LsfG~SsK~~~~~~IGrfG~G 228 (826)
.+...++..||+||++|...+ ..|.|.+... ++...|.|.|+|.| ++++.+...+...++.+ .+-.|+|
T Consensus 145 ~~~~qvl~NLl~NA~~a~~~g-g~I~v~~~~~--~~~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~~------~~G~GLG 215 (247)
T 4fpp_A 145 KPSSRAVLNIAQIAASALPAG-GVATVKGVAA--DGRFSIIADAKGPRARLRPEVLAGLKGEPLAEG------LGGPWVQ 215 (247)
T ss_dssp HHHHHHHHHHHHHHHTTCTTC-CEEEEEEEEE--TTEEEEEEEEESTTCCCCHHHHHHHTTCCCCSS------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCC-CeEEEEEEEE--CCEEEEEEEEcCCCCCCCHHHHHHhcCCCCCCC------CCCccHH
Confidence 345678999999999996533 4577777543 46778999999987 66665555543222222 2234788
Q ss_pred cccc---ccccCCeEEEEee
Q 003366 229 FKTS---TMRLGADVIVFSC 245 (826)
Q Consensus 229 fKsA---smrLG~~v~V~SK 245 (826)
+..+ .-..|-.+.|-|.
T Consensus 216 Lai~~~iv~~hGG~i~v~s~ 235 (247)
T 4fpp_A 216 AAYLNALVRAAGGQIAVEIG 235 (247)
T ss_dssp HHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHcCCEEEEEEc
Confidence 7532 2256888888765
No 58
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=92.56 E-value=0.13 Score=63.84 Aligned_cols=86 Identities=17% Similarity=0.247 Sum_probs=53.1
Q ss_pred HHHHHHHhccchhhhhCC-C-ceEEEEEEEccCCCceEEEEEECCCCCCHHHH--------hhhcc-ccccccccC---C
Q 003366 154 LGAFAELLDNSLDEVCNG-A-TYSNIDMLINRKDGSRMLLIEDNGGGMNPDKM--------RHCMS-LGYSAKSKA---A 219 (826)
Q Consensus 154 FgAIAELIDNAiDA~~~g-A-t~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL--------~~~Ls-fG~SsK~~~---~ 219 (826)
.--|-|+||||+|...++ + +.|.|.+.. ....|+|.|||.||+-+.- .-+|. +-...|..+ .
T Consensus 61 ~hl~~EildNsiDea~ag~~~~~I~V~i~~----~d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd~~~yk 136 (1177)
T 4gfh_A 61 FKIFDEILVNAADNKVRDPSMKRIDVNIHA----EEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKK 136 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCCEEEEEEET----TTTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCCCSSCC
T ss_pred eeEeeEEEEChHhHHhhCCCCCeEEEEEEC----CCCEEEEEecCCcccccccCCCCCEeeeeeccccccccCcCCCCCe
Confidence 345789999999954434 2 567777642 1347999999999985421 11121 233334322 3
Q ss_pred cccCcccCcccccccccCCeEEEEe
Q 003366 220 NTIGQYGNGFKTSTMRLGADVIVFS 244 (826)
Q Consensus 220 ~~IGrfG~GfKsAsmrLG~~v~V~S 244 (826)
.+-|.-|+|.+- .=.|+..+.|-+
T Consensus 137 vSGGLHGVG~sv-VNALS~~~~vev 160 (1177)
T 4gfh_A 137 VTGGRNGYGAKL-CNIFSTEFILET 160 (1177)
T ss_dssp CCSCCSSCHHHH-HHHTEEEEEEEE
T ss_pred EeccCCChhhhH-HhhcCCceEEEE
Confidence 467999999753 334677766555
No 59
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=92.22 E-value=1.2 Score=45.79 Aligned_cols=93 Identities=15% Similarity=0.194 Sum_probs=55.4
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASD 802 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~ 802 (826)
+..|..|...++.|+...|+.+..-+++...+++++++++.+++++..+-+.+..-+.++...-+.|.+.|+.+-++...
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~ 171 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVE 171 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555566666666666666666555666666666666666666666666655555555555555666666666666555
Q ss_pred HH-HHHHHHHhhhh
Q 003366 803 TI-QDLLDKIKLLE 815 (826)
Q Consensus 803 ~i-~~~~~~~~~~~ 815 (826)
.| .+||..-..+.
T Consensus 172 ~i~~~lL~~Yerir 185 (256)
T 3na7_A 172 KTEPKIYSFYERIR 185 (256)
T ss_dssp TSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 55 35555444444
No 60
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.19 E-value=1.5 Score=54.02 Aligned_cols=26 Identities=15% Similarity=0.431 Sum_probs=12.3
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHH
Q 003366 750 RCRSLEAQLKVMQQTIEELNKEQESL 775 (826)
Q Consensus 750 ~~~~l~~~~~~~~~~~~~~~keq~~l 775 (826)
+.++|++++++++++++++.||-+.|
T Consensus 985 ~v~~L~~e~~~l~~~~~~~~ke~~~l 1010 (1080)
T 2dfs_A 985 RVLSLQEEIAKLRKELHQTQTEKKTI 1010 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444
No 61
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=89.90 E-value=3.7 Score=42.26 Aligned_cols=21 Identities=5% Similarity=0.158 Sum_probs=10.5
Q ss_pred hhhhhhhhhHHHHHHHHhHHh
Q 003366 723 LGQLKQENHELKKRLEKKEGE 743 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~ 743 (826)
+++++.+..+++.|+.+.+..
T Consensus 62 ~~~~e~~i~~~~~ri~~~~~~ 82 (256)
T 3na7_A 62 VSKNEQTLQDTNAKIASIQKK 82 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555554443
No 62
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=89.53 E-value=4.6 Score=37.85 Aligned_cols=83 Identities=30% Similarity=0.416 Sum_probs=43.3
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHH-HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEER-ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEER-DRREREEENLRKKIKDA 800 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~-~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer-~rr~~e~~~lr~kl~~a 800 (826)
++.+.++...|++.|.+.+.. +.|+ +++..|..+..+++.+|+ .|++.|-|+ ||| .|-...+..|..||+++
T Consensus 15 ~~~~~eel~~lke~l~k~e~~-r~ele~~~~~l~~Ek~~L~~qL~---~E~~~l~e~--EE~~~~L~~~k~eLe~~l~el 88 (129)
T 2fxo_A 15 MASMKEEFTRLKEALEKSEAR-RKELEEKMVSLLQEKNDLQLQVQ---AEQDNLADA--EERCDQLIKNKIQLEAKVKEM 88 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhH--HHHHHHHHHHHHHHHHHHHHH
Confidence 556666666677776654433 3333 556666666666665544 355555554 333 23333344455555555
Q ss_pred HHHHHHHHHHH
Q 003366 801 SDTIQDLLDKI 811 (826)
Q Consensus 801 ~~~i~~~~~~~ 811 (826)
..-+.+.-++.
T Consensus 89 ~~rleeeee~~ 99 (129)
T 2fxo_A 89 NKRLEDEEEMN 99 (129)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55554443333
No 63
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=89.18 E-value=0.94 Score=55.98 Aligned_cols=11 Identities=27% Similarity=0.746 Sum_probs=7.0
Q ss_pred CcceeeeeecC
Q 003366 487 GRGVIGVLEAN 497 (826)
Q Consensus 487 GrGVIGVlEan 497 (826)
....|||||..
T Consensus 456 ~~~~IgvLDi~ 466 (1184)
T 1i84_S 456 GASFLGILDIA 466 (1184)
T ss_dssp -CEEEEEEECC
T ss_pred CcceEEEeecC
Confidence 34677777775
No 64
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=88.89 E-value=1.4 Score=54.26 Aligned_cols=93 Identities=16% Similarity=0.179 Sum_probs=39.4
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHH-------HHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhH----H
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEE-------RERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEER---DRRE----R 788 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e-------~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer---~rr~----~ 788 (826)
|..++++|.+|.+++...++.++.| ++..+.++.+++.++.++.++.+|.+.|-+-+.+.. ...+ +
T Consensus 937 L~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~ 1016 (1080)
T 2dfs_A 937 IDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADK 1016 (1080)
T ss_dssp --------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445567777777766555544333 444555666666666666666666666655554432 2221 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003366 789 EEENLRKKIKDASDTIQDLLDKIKLLE 815 (826)
Q Consensus 789 e~~~lr~kl~~a~~~i~~~~~~~~~~~ 815 (826)
..+.|..|+..-.+..+.|-.++..++
T Consensus 1017 ~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1017 YKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223444444444444444444444443
No 65
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=88.75 E-value=0.39 Score=52.03 Aligned_cols=75 Identities=13% Similarity=0.149 Sum_probs=43.4
Q ss_pred cHHHHHHHHhccchhhhhC--CCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccccccccCCcccCcccCcc
Q 003366 152 WALGAFAELLDNSLDEVCN--GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGYSAKSKAANTIGQYGNGF 229 (826)
Q Consensus 152 wpFgAIAELIDNAiDA~~~--gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~SsK~~~~~~IGrfG~Gf 229 (826)
.+.-|+.|||.||+..... ....|.|.+.... ++...|.|.|+|.|+++. . .-+.-|.|+
T Consensus 297 ~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~-~~~l~i~V~D~G~g~~~~----------~-------~~~~~G~GL 358 (399)
T 3ke6_A 297 DIVHAISEFVENAVEHGYATDVSKGIVVAAALAG-DGNVRASVIDRGQWKDHR----------D-------GARGRGRGL 358 (399)
T ss_dssp HHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECT-TSEEEEEEEESCBC-----------------------------CH
T ss_pred HHHHHHHHHHHHHHHhcccCCCCceEEEEEEEcC-CCEEEEEEEECCCCCCCC----------C-------CCCCCCcHH
Confidence 3456899999999998310 1356777776532 346789999999999876 0 012347777
Q ss_pred cccccccCCeEEEEee
Q 003366 230 KTSTMRLGADVIVFSC 245 (826)
Q Consensus 230 KsAsmrLG~~v~V~SK 245 (826)
.... +++..+.+.+.
T Consensus 359 ~lv~-~l~~~~~~~~~ 373 (399)
T 3ke6_A 359 AMAE-ALVSEARIMHG 373 (399)
T ss_dssp HHHH-TTSSEEEEEEE
T ss_pred HHHH-HHHHheeeEEC
Confidence 5432 47777775543
No 66
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=88.48 E-value=7 Score=39.46 Aligned_cols=89 Identities=12% Similarity=0.278 Sum_probs=46.3
Q ss_pred hhhhhhhhHHHHHHHHhHHhHHHHH-----------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 003366 724 GQLKQENHELKKRLEKKEGELQEER-----------ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEEN 792 (826)
Q Consensus 724 ~~~~~e~~~~~~~~~~~~~~~~~e~-----------~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~ 792 (826)
.+|+.|..+..+-=..+|.+|..|+ .++..|..+++.++.|++....|-...|..+..|-..--.+.+.
T Consensus 27 ~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~ 106 (189)
T 2v71_A 27 QEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQ 106 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444454444 44445555556666666666666555566665554444444445
Q ss_pred HHHHH--------------HHHHHHHHHHHHHHh
Q 003366 793 LRKKI--------------KDASDTIQDLLDKIK 812 (826)
Q Consensus 793 lr~kl--------------~~a~~~i~~~~~~~~ 812 (826)
|+++| ..++.+++|+=.+++
T Consensus 107 l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln 140 (189)
T 2v71_A 107 LHKYVRELEQANDDLERAKRATIMSLEDFEQRLN 140 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHH
Confidence 54444 334555555555554
No 67
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=88.20 E-value=8.9 Score=34.49 Aligned_cols=89 Identities=25% Similarity=0.419 Sum_probs=63.0
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASD 802 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~ 802 (826)
|..|+.|.....+|....+..+...-+++..++.++..+++++.-+..+-+.+-+-+.+-.. .-+.-++++.+|-.
T Consensus 11 m~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~----kLe~~ek~~~~AE~ 86 (101)
T 3u59_A 11 MQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQE----KLEQAEKKATDAEA 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 66788888888999999999988888889999999999999887666665544443332221 11222455566777
Q ss_pred HHHHHHHHHhhhh
Q 003366 803 TIQDLLDKIKLLE 815 (826)
Q Consensus 803 ~i~~~~~~~~~~~ 815 (826)
.+..|--+|..+|
T Consensus 87 evasLnRriqllE 99 (101)
T 3u59_A 87 EVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 7777777776665
No 68
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=88.12 E-value=6.4 Score=35.30 Aligned_cols=65 Identities=18% Similarity=0.302 Sum_probs=46.7
Q ss_pred HhhhcHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003366 749 ERCRSLEAQLKVMQQTIEELNK---------------EQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKL 813 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~~k---------------eq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~ 813 (826)
.....|+.+++++++.++++++ ....+|+-+..+...-..+-+.|+.++.+....|+.|-.+++.
T Consensus 24 ~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~~ 103 (112)
T 1l8d_A 24 QRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIKR 103 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677788888888888765 2245777777777777777777788877777777777777763
No 69
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=87.17 E-value=8.8 Score=38.12 Aligned_cols=84 Identities=21% Similarity=0.329 Sum_probs=53.4
Q ss_pred HHHHHhHHhHHHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------------HHHHHH
Q 003366 735 KRLEKKEGELQEER----ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRE-----------------REEENL 793 (826)
Q Consensus 735 ~~~~~~~~~~~~e~----~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~-----------------~e~~~l 793 (826)
.||.|...+++.-+ .+|+-|...+.-++..-..+.++-..|=-.+.+||.-|- .|-+.+
T Consensus 30 ~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~ 109 (168)
T 3o0z_A 30 VRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHL 109 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666664333 444444444444555555555555555556666664433 345677
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcC
Q 003366 794 RKKIKDASDTIQDLLDKIKLLEKMK 818 (826)
Q Consensus 794 r~kl~~a~~~i~~~~~~~~~~~~~~ 818 (826)
+.++..+...-+.|-|+|..+||-|
T Consensus 110 k~~~~k~~~e~r~L~Ekl~~lEKe~ 134 (168)
T 3o0z_A 110 KHNLEKVEGERKEAQDMLNHSEKEK 134 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888899999999999854
No 70
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=87.12 E-value=1.9 Score=53.25 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=7.7
Q ss_pred ceeeeeecCcccc
Q 003366 489 GVIGVLEANFVEP 501 (826)
Q Consensus 489 GVIGVlEanfleP 501 (826)
|++.+||---+-|
T Consensus 535 Gil~lLdee~~~p 547 (1184)
T 1i84_S 535 GVLALLDEECWFP 547 (1184)
T ss_dssp CHHHHHHHTTSCT
T ss_pred CchhhhhhhhCCC
Confidence 7777776544445
No 71
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=86.83 E-value=12 Score=33.83 Aligned_cols=89 Identities=17% Similarity=0.311 Sum_probs=61.3
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASD 802 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~ 802 (826)
|..|+.|.....+|....+..+...-+++..++.++..++++|..+..+-+.+-+-+.+-...-+ + -.+++.+|-.
T Consensus 11 m~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLe--e--~ek~~~~aE~ 86 (101)
T 3u1c_A 11 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLL--F--AEENAAKAES 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H--HHHHHHHHHH
Confidence 67788888888999999999988888899999999999999887665555544444443322211 1 1344456666
Q ss_pred HHHHHHHHHhhhh
Q 003366 803 TIQDLLDKIKLLE 815 (826)
Q Consensus 803 ~i~~~~~~~~~~~ 815 (826)
.+..|--+|..+|
T Consensus 87 ev~~L~RriqllE 99 (101)
T 3u1c_A 87 EVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 6666666666655
No 72
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=86.81 E-value=0.39 Score=47.85 Aligned_cols=57 Identities=14% Similarity=0.254 Sum_probs=36.7
Q ss_pred HHHHHhccchhhhhC-----CCceEEEEEEEccCCCceEEEEEECCCCCCHHHHhhhccccc
Q 003366 156 AFAELLDNSLDEVCN-----GATYSNIDMLINRKDGSRMLLIEDNGGGMNPDKMRHCMSLGY 212 (826)
Q Consensus 156 AIAELIDNAiDA~~~-----gAt~V~Idi~~~~~~g~~~L~I~DNG~GMs~eeL~~~LsfG~ 212 (826)
.+..|++||.+|+.+ ....|.|.+.....++...|.|.|+|.|++.+.+.+++.-|+
T Consensus 109 ~lgnLi~na~~Ai~~~~~~~~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~~~~if~~~~ 170 (192)
T 1ixm_A 109 KLAKLMRKLFHLFDQAVSRESENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFDDIRQNGY 170 (192)
T ss_dssp HHHHHHHHHHHHHHHHBCTTSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC-------
T ss_pred HHHHHHHHHHHHHHhhhccCCCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHHHHHHHhCCC
Confidence 356788888888642 235677777653113568899999999999999888875444
No 73
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=86.63 E-value=9.9 Score=37.28 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 003366 787 EREEENLRKKIKDASDTIQDLLDKIKLLEK 816 (826)
Q Consensus 787 ~~e~~~lr~kl~~a~~~i~~~~~~~~~~~~ 816 (826)
+...+.|++.|+|+-..|..|=++|..|..
T Consensus 114 e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~ 143 (154)
T 2ocy_A 114 EILNKRLTEQLREKDTLLDTLTLQLKNLKK 143 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567999999999888888888887653
No 74
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=86.04 E-value=3 Score=46.24 Aligned_cols=97 Identities=16% Similarity=0.311 Sum_probs=55.0
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFA----EERDRREREEENLRKKIK 798 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~----eer~rr~~e~~~lr~kl~ 798 (826)
|+.+++.-..+++.|.++-.++. .++-..|.++...+++++++++.++-++=..+. |++..--.|-..|+++|+
T Consensus 4 ~~~~r~~~~~~~~~~~~r~~~~~--~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~ 81 (421)
T 1ses_A 4 LKRLRQEPEVFHRAIREKGVALD--LEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAK 81 (421)
T ss_dssp HHHHHHCHHHHHHHHHHHTCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHhCCCcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Confidence 66777766777888887755431 555555555555556666666555555544443 333333344555555666
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCc
Q 003366 799 DASDTIQDLLDKIKLLEKMKTPSI 822 (826)
Q Consensus 799 ~a~~~i~~~~~~~~~~~~~~~~~~ 822 (826)
+.-....++-+++..+- +..||.
T Consensus 82 ~~~~~~~~~~~~~~~~~-~~ipN~ 104 (421)
T 1ses_A 82 RLEEALREKEARLEALL-LQVPLP 104 (421)
T ss_dssp HHHHHHHHHHHHHHHHH-TTCCCC
T ss_pred HHHHHHHHHHHHHHHHH-HhCCCC
Confidence 55555555555555433 556654
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.02 E-value=2.3 Score=46.75 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=16.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 781 EERDRREREEENLRKKIKDASDTIQDLLDK 810 (826)
Q Consensus 781 eer~rr~~e~~~lr~kl~~a~~~i~~~~~~ 810 (826)
||.+|-..|-+++-+++.+|-.|.||+..+
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
T 3oja_A 449 EENARLKKLNGEADLALASANATLQELVVR 478 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhhhhhhHhcccHHHHHHHH
Confidence 444455555555555556666666666544
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.52 E-value=3.8 Score=44.99 Aligned_cols=57 Identities=12% Similarity=0.145 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003366 758 LKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLL 814 (826)
Q Consensus 758 ~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~ 814 (826)
.+++++++|.....++.+.+++++|-+.-.+|.+.|++.+.+.-..|.+-.+++..+
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
T 3oja_A 419 YEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQEL 475 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHH
Confidence 344444444444445566677777777777788888888888888887777776654
No 77
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=85.48 E-value=11 Score=33.55 Aligned_cols=74 Identities=20% Similarity=0.392 Sum_probs=47.6
Q ss_pred HHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003366 735 KRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIK 812 (826)
Q Consensus 735 ~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~ 812 (826)
|-|.++|+.++.=.|....|..++++++.+-..++.+.+.+ ...|+..++|-+.|+.-...=-.-|+.||.|+.
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~----~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e 79 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNA----QHQREELERENNHLKEQQNGWQERLQALLGRME 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34555566666666666667667766666666666655443 445666666767776666666667777777753
No 78
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.98 E-value=6.1 Score=44.17 Aligned_cols=100 Identities=19% Similarity=0.165 Sum_probs=48.8
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHHHh-------hhcHHHHHHHHHHHHHHHHHHHHHHH--------------HH
Q 003366 720 GANLGQLKQENHELKKRLEKKEGELQEERER-------CRSLEAQLKVMQQTIEELNKEQESLI--------------DI 778 (826)
Q Consensus 720 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~-------~~~l~~~~~~~~~~~~~~~keq~~li--------------~~ 778 (826)
+..+.+|++|.....+-+..+++++...++. .....+++++..+++++..++-+... +-
T Consensus 462 ~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (597)
T 3oja_B 462 RAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETED 541 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhh
Confidence 4567777777777777776666666444321 11122233332233222222222222 22
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 003366 779 FAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMKT 819 (826)
Q Consensus 779 f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~~~~~ 819 (826)
+-+|+++-++..+..++++++....++++..+++.++.--.
T Consensus 542 ~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 542 LEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22444444444455555555555555566666666664433
No 79
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=84.58 E-value=15 Score=35.17 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=6.5
Q ss_pred hhhhhhHHHHHHHHhHH
Q 003366 726 LKQENHELKKRLEKKEG 742 (826)
Q Consensus 726 ~~~e~~~~~~~~~~~~~ 742 (826)
|+.+...+..++..++.
T Consensus 11 l~~~~~~~~~~~~~l~~ 27 (284)
T 1c1g_A 11 LKLDKENALDRADEAEA 27 (284)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 33333333333333333
No 80
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.58 E-value=10 Score=34.58 Aligned_cols=49 Identities=16% Similarity=0.317 Sum_probs=36.4
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 003366 722 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNK 770 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~k 770 (826)
-|.+|+.++......+.++.+.|..|+.++...|.++..+++.||+|.-
T Consensus 13 ~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 13 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666777777777777777888888888888888777777777653
No 81
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=83.05 E-value=19 Score=34.51 Aligned_cols=44 Identities=32% Similarity=0.465 Sum_probs=26.5
Q ss_pred hhhhhhhHHHHHHHHhHHhH----------H---HHH-HhhhcHHHHHHHHHHHHHHH
Q 003366 725 QLKQENHELKKRLEKKEGEL----------Q---EER-ERCRSLEAQLKVMQQTIEEL 768 (826)
Q Consensus 725 ~~~~e~~~~~~~~~~~~~~~----------~---~e~-~~~~~l~~~~~~~~~~~~~~ 768 (826)
.|+.||..|++.+......+ + +++ ++++.|..++.+++.+...+
T Consensus 26 ~l~~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 26 RLRHENKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777776554322 2 122 55667777777776666333
No 82
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=82.98 E-value=3.3 Score=40.55 Aligned_cols=59 Identities=19% Similarity=0.258 Sum_probs=48.4
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHH-------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 722 NLGQLKQENHELKKRLEKKEGELQEER-------ERCRSLEAQLKVMQQTIEELNKEQESLIDIFA 780 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~~~~~~e~-------~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~ 780 (826)
.|..|+.|...|+.|+..+++++...- |-.-+|..|+..+++++..+.+|...||+-+=
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM 134 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWL 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588899999999999999888864322 66777888888889999999999999988764
No 83
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=80.63 E-value=14 Score=34.67 Aligned_cols=81 Identities=23% Similarity=0.221 Sum_probs=48.4
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 003366 722 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDAS 801 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~ 801 (826)
.+...|.|..+|+..++.++.+|+.-+..+.+|+.++.++++..+..-+.-...|.-+ +.|-..+|..+..-.
T Consensus 32 ~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~l-------E~eL~~~r~em~~ql 104 (131)
T 3tnu_A 32 LVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSV-------EEQLAQLRCEMEQQN 104 (131)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 3777889999999999999999998889999999999999987765433323333332 233333444444444
Q ss_pred HHHHHHHH
Q 003366 802 DTIQDLLD 809 (826)
Q Consensus 802 ~~i~~~~~ 809 (826)
..-|+||+
T Consensus 105 ~EYq~Ll~ 112 (131)
T 3tnu_A 105 QEYKILLD 112 (131)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44555554
No 84
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=80.10 E-value=9 Score=42.92 Aligned_cols=98 Identities=16% Similarity=0.241 Sum_probs=55.8
Q ss_pred hhhhhhhhhHHHHHHHHhHH-h---HHHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEG-E---LQEER----ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLR 794 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~-~---~~~e~----~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr 794 (826)
|+.+++.-..+++.|.++-. + +-.++ ++.|.|..++++++.+.+++.|+--.+... .|++..--.|...|+
T Consensus 4 ~~~~r~n~~~~~~~~~~R~~~~~~~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~-~~~~~~l~~~~~~~~ 82 (455)
T 2dq0_A 4 IKLIRENPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKK-GEPVDELLAKSREIV 82 (455)
T ss_dssp HHHHHHCHHHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CCCTHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cccHHHHHHHHHHHH
Confidence 66677666667777777643 2 11222 556666666666666655555553222110 133344445666677
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCc
Q 003366 795 KKIKDASDTIQDLLDKIKLLEKMKTPSI 822 (826)
Q Consensus 795 ~kl~~a~~~i~~~~~~~~~~~~~~~~~~ 822 (826)
++|++.-..+.++-+++..+- +..||.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~ipN~ 109 (455)
T 2dq0_A 83 KRIGELENEVEELKKKIDYYL-WRLPNI 109 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhCCCC
Confidence 777777777777777766544 566664
No 85
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=79.88 E-value=17 Score=33.87 Aligned_cols=80 Identities=16% Similarity=0.296 Sum_probs=52.4
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASD 802 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~ 802 (826)
+..-|.|..+|+..++.++.+|+.=+..+.+||.+|.++++..+..-+.-...|.-+-+ |-..+|.-+..-..
T Consensus 31 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~-------eL~~~r~e~~~ql~ 103 (129)
T 3tnu_B 31 LRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEE-------ALQKAKQDMARLLR 103 (129)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHH
Confidence 67778999999999999999999988999999999999998776543333333333322 22333333333344
Q ss_pred HHHHHHH
Q 003366 803 TIQDLLD 809 (826)
Q Consensus 803 ~i~~~~~ 809 (826)
.-|+||+
T Consensus 104 EYq~Lln 110 (129)
T 3tnu_B 104 EYQELMN 110 (129)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4455554
No 86
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=78.82 E-value=9.1 Score=36.62 Aligned_cols=63 Identities=22% Similarity=0.191 Sum_probs=44.8
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003366 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLE 815 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~ 815 (826)
+-.-.+..+.+.++++|+++.+|.++|.. |-..-+.+-+++++++++.-..|++|-+++..||
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~----el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLKH----ELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556777888888888888888875 4444455667777777777777777777777665
No 87
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=78.53 E-value=1.9 Score=49.69 Aligned_cols=40 Identities=13% Similarity=0.273 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003366 773 ESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIK 812 (826)
Q Consensus 773 ~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~ 812 (826)
+..|.-..||++||+.|-+.|+.+|..|-....+-.++|.
T Consensus 418 ~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l~ 457 (575)
T 2i1j_A 418 QEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALL 457 (575)
T ss_dssp ------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778899999999999999999998887766666665
No 88
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=78.15 E-value=11 Score=42.76 Aligned_cols=99 Identities=14% Similarity=0.205 Sum_probs=53.1
Q ss_pred hhhhhhhhhHHHHHHHHhHHh----HHHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhH
Q 003366 723 LGQLKQENHELKKRLEKKEGE----LQEER----ERCRSLEAQLKVMQQTIEELNKEQESLIDIFA-------EERDRRE 787 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~----~~~e~----~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~-------eer~rr~ 787 (826)
|+.+++.-..+++.|.++-.+ +-.++ ++.|.|..++++++.+.+++.|+--.+...=. |++..--
T Consensus 43 ~~~ir~n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~ 122 (501)
T 1wle_A 43 MESLCAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLR 122 (501)
T ss_dssp HHHHHHSHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHH
Confidence 777876555557888877543 11222 55666666666666655555555333221100 1233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCc
Q 003366 788 REEENLRKKIKDASDTIQDLLDKIKLLEKMKTPSI 822 (826)
Q Consensus 788 ~e~~~lr~kl~~a~~~i~~~~~~~~~~~~~~~~~~ 822 (826)
.|...|+++|++.-....++-+++..+- +..||.
T Consensus 123 ~~~~~l~~~i~~l~~~~~~~~~~l~~~l-~~iPN~ 156 (501)
T 1wle_A 123 ARGREIRKQLTLLYPKEAQLEEQFYLRA-LRLPNQ 156 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCC
Confidence 4555566666666666666666665443 556664
No 89
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=76.68 E-value=19 Score=33.57 Aligned_cols=37 Identities=16% Similarity=0.295 Sum_probs=24.9
Q ss_pred hhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHH
Q 003366 729 ENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTI 765 (826)
Q Consensus 729 e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~ 765 (826)
|...|+.+|.-.|+.|......|..|.+.+...+..+
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~l 61 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM 61 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888887766666766666665544433
No 90
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=76.08 E-value=15 Score=34.27 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=24.2
Q ss_pred hhhhhhhhHHHHHHHHhHHhHHHHHHh-------hhcHHHHHHHHHHHHHHHHH
Q 003366 724 GQLKQENHELKKRLEKKEGELQEERER-------CRSLEAQLKVMQQTIEELNK 770 (826)
Q Consensus 724 ~~~~~e~~~~~~~~~~~~~~~~~e~~~-------~~~l~~~~~~~~~~~~~~~k 770 (826)
+.|...+..|-+-...+...|+.|.+. |..|..+-.+++.+|.+++.
T Consensus 37 ~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~ 90 (129)
T 2fxo_A 37 KELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNK 90 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555666666644 44444444444444444443
No 91
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=76.02 E-value=6.7 Score=35.39 Aligned_cols=71 Identities=18% Similarity=0.193 Sum_probs=48.5
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 003366 722 NLGQLKQENHELKKRLEKKEGELQEER----ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKK 796 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~~~~~~e~----~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~k 796 (826)
-|..|+.+|.+|..+|..+|..+..++ ...-.|+.+|..+++.++....|=..|.||- -+-|.|-..-|+=
T Consensus 13 ~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvK----l~Le~EIatYrkL 87 (95)
T 3mov_A 13 LYFQGQKESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVK----LALDMEISAYRKL 87 (95)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 488899999999999999999887776 4556688888888888888777767777763 2334444444443
No 92
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=74.45 E-value=9.6 Score=52.09 Aligned_cols=14 Identities=7% Similarity=0.318 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 003366 791 ENLRKKIKDASDTI 804 (826)
Q Consensus 791 ~~lr~kl~~a~~~i 804 (826)
+....||.-|..-|
T Consensus 2066 ~~~~~kl~rA~~Li 2079 (3245)
T 3vkg_A 2066 SKVKNKVDRSIALL 2079 (3245)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444333
No 93
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=74.43 E-value=17 Score=41.20 Aligned_cols=98 Identities=14% Similarity=0.161 Sum_probs=52.6
Q ss_pred hhhhhh----hhhHHHHHHHHhHHh--HHHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 003366 723 LGQLKQ----ENHELKKRLEKKEGE--LQEER----ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEEN 792 (826)
Q Consensus 723 ~~~~~~----e~~~~~~~~~~~~~~--~~~e~----~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~ 792 (826)
|+.|++ .-..+++.|.++-.+ +-.++ ++.|.|..++++++.+.+++.|+=-.+.. =.|+...--.|...
T Consensus 4 i~~ir~~~~~n~~~v~~~~~~R~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~-~~~~~~~l~~~~~~ 82 (485)
T 3qne_A 4 INAFLVEKGGDPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFK-AKEDAKDLIAEKEK 82 (485)
T ss_dssp GGGGCGGGTCCHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHH
T ss_pred hHHHhccCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHH
Confidence 556666 334567777765432 11222 55566666666666665555554322211 01223333445667
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCc
Q 003366 793 LRKKIKDASDTIQDLLDKIKLLEKMKTPSI 822 (826)
Q Consensus 793 lr~kl~~a~~~i~~~~~~~~~~~~~~~~~~ 822 (826)
|+.+|++.-..+.++-+++..+- +..||+
T Consensus 83 l~~~i~~le~~~~~~~~~~~~~l-~~iPN~ 111 (485)
T 3qne_A 83 LSNEKKEIIEKEAEADKNLRSKI-NQVGNI 111 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-TTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhCCCC
Confidence 77777777777777777766543 555654
No 94
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=74.33 E-value=27 Score=39.51 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=24.9
Q ss_pred hhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHH
Q 003366 726 LKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTI 765 (826)
Q Consensus 726 ~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~ 765 (826)
++..+.+|+.+|..++...+...+.-+.|...++..|+++
T Consensus 98 V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi 137 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQR 137 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccc
Confidence 5566788888888887665555555555555554444443
No 95
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=74.13 E-value=7.7 Score=33.48 Aligned_cols=38 Identities=26% Similarity=0.272 Sum_probs=31.8
Q ss_pred HHHHHhHHhHHHHH----HhhhcHHHHHHHHHHHHHHHHHHH
Q 003366 735 KRLEKKEGELQEER----ERCRSLEAQLKVMQQTIEELNKEQ 772 (826)
Q Consensus 735 ~~~~~~~~~~~~e~----~~~~~l~~~~~~~~~~~~~~~keq 772 (826)
+||...-++|+..+ +-+|.|+.+++.+|+.+..++|.-
T Consensus 20 ~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~ 61 (74)
T 2q6q_A 20 FELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKL 61 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhc
Confidence 67888888888888 778999999999999998888753
No 96
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=73.01 E-value=38 Score=30.15 Aligned_cols=84 Identities=14% Similarity=0.251 Sum_probs=52.7
Q ss_pred HHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHhhhHHHHHHH
Q 003366 732 ELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNK------------------EQESLIDIFAEERDRREREEENL 793 (826)
Q Consensus 732 ~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~k------------------eq~~li~~f~eer~rr~~e~~~l 793 (826)
++-.++......++.=..+...|+.++.+++-.++|+.. ..+..+..+.+..+.-+.+.+.|
T Consensus 10 ~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~l 89 (117)
T 2zqm_A 10 AMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNAL 89 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444433335555666666666666665543 34566666777777777777888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 003366 794 RKKIKDASDTIQDLLDKIKLLE 815 (826)
Q Consensus 794 r~kl~~a~~~i~~~~~~~~~~~ 815 (826)
.++++..-..+.+|-.+|.+.-
T Consensus 90 e~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 90 ERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887777543
No 97
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=71.34 E-value=9.1 Score=33.71 Aligned_cols=72 Identities=24% Similarity=0.275 Sum_probs=48.4
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEER----ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIK 798 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~----~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~ 798 (826)
|..|+..+.+|..+|...|.....++ ...-.|+.+|..++..++...+|=..|.||-. +=|.|-..-|+=|+
T Consensus 5 ie~L~~q~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~----~Le~EIatYRkLLE 80 (86)
T 1x8y_A 5 LSQLQCQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKL----ALDMEIHAYRKLLE 80 (86)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHc
Confidence 56778888888888988888877666 45567888888888888888888888888742 34566666665544
No 98
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=71.18 E-value=68 Score=32.34 Aligned_cols=36 Identities=31% Similarity=0.370 Sum_probs=21.6
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQL 758 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~ 758 (826)
|...|..-.+++.++..++.+|..=.+-.|.||.+|
T Consensus 12 ~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~EL 47 (189)
T 2v71_A 12 TAYWKELSMKYKQSFQEARDELVEFQEGSRELEAEL 47 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777777777633334444444443
No 99
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=70.93 E-value=5.1 Score=44.20 Aligned_cols=50 Identities=20% Similarity=0.444 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003366 753 SLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKL 813 (826)
Q Consensus 753 ~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~ 813 (826)
.|++++++++++|+++..+.+.|.+. -.+|+.+|+|| -|+||||...|+.
T Consensus 14 ~l~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~rr~l---~n~~~elkgnIrV 63 (403)
T 4etp_A 14 ALKEKIAALKEKIKDTELGMKELNEI--------LIKEETVRRTL---HNELQELRGNIRV 63 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH---HHHHHHHHCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH---HHHHHHcCCCeEE
Confidence 33444444444444444444433322 34567888888 6889998876654
No 100
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=70.76 E-value=11 Score=41.68 Aligned_cols=98 Identities=15% Similarity=0.326 Sum_probs=53.0
Q ss_pred hhhhhhhhhHHHHHHHHhHHh-H--HHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGE-L--QEER----ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRK 795 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~-~--~~e~----~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~ 795 (826)
|+.+++.-..+++.|.++-.+ + -.++ ++.|.|..++++++.+.+++.|+--.+... .|++..--.|...|++
T Consensus 4 ~~~~r~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~-~~~~~~l~~~~~~~~~ 82 (425)
T 2dq3_A 4 INLIREKPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKRE-GKDTTEIQNRVKELKE 82 (425)
T ss_dssp HHHHHHCHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSS-CSCTTTSTTHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CccHHHHHHHHHHHHH
Confidence 667777666778888776443 2 1221 445555555555555555444442111000 1333333456667777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCc
Q 003366 796 KIKDASDTIQDLLDKIKLLEKMKTPSI 822 (826)
Q Consensus 796 kl~~a~~~i~~~~~~~~~~~~~~~~~~ 822 (826)
+|++.-..+.++-+++..+- +..||.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~~ipN~ 108 (425)
T 2dq3_A 83 EIDRLEEELRKVEEELKNTL-LWIPNL 108 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhCCCC
Confidence 77777777777777666543 555554
No 101
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=70.70 E-value=7.2 Score=34.40 Aligned_cols=41 Identities=32% Similarity=0.530 Sum_probs=21.7
Q ss_pred hhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHH
Q 003366 726 LKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQE 773 (826)
Q Consensus 726 ~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~ 773 (826)
|..|+.++-.||+..| .+|..|+.+|+.++++|++..-+|+
T Consensus 4 l~~e~e~~~~klq~~E-------~rN~~Le~~v~~le~~Le~s~~~q~ 44 (79)
T 3cvf_A 4 MAAEREETQQKVQDLE-------TRNAELEHQLRAMERSLEEARAERE 44 (79)
T ss_dssp ------CTTHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555544 3466677777777777777655443
No 102
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=70.57 E-value=16 Score=31.97 Aligned_cols=71 Identities=18% Similarity=0.323 Sum_probs=52.7
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEER----ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKI 797 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~----~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl 797 (826)
|..|+..|.+|...|...|.....++ .+.-.|+.+|..+++.++...+|=..|.||-. +=|.|-..-|+=|
T Consensus 3 l~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~----~Ld~EIatYRkLL 77 (84)
T 1gk4_A 3 VDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKM----ALDIEIATYRKLL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHH
Confidence 56677888888888888888776665 56677889999999988888888888888742 3345555555444
No 103
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=69.36 E-value=36 Score=30.50 Aligned_cols=71 Identities=17% Similarity=0.287 Sum_probs=41.4
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKI 797 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl 797 (826)
..++..+...+..+..+.|+++..=.-|++.|+.+++.++.+|.+++...+.- ...+..-+.|..+|-+|+
T Consensus 25 ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~----ek~~~~AE~evasLnRri 95 (101)
T 3u59_A 25 AEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQA----EKKATDAEAEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 34556666666677777777665544666677777776666666665443322 112222345666676665
No 104
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=69.13 E-value=8.2 Score=34.05 Aligned_cols=42 Identities=26% Similarity=0.347 Sum_probs=29.6
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH
Q 003366 722 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ 763 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~ 763 (826)
=|+.+..+|.+|++|+..+|..|+.=+.+...+.++|+.+.+
T Consensus 14 klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e 55 (79)
T 3cvf_A 14 KVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQ 55 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888999999999988888776555555555555544443
No 105
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=68.70 E-value=8.8 Score=33.34 Aligned_cols=25 Identities=40% Similarity=0.537 Sum_probs=16.9
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHH
Q 003366 749 ERCRSLEAQLKVMQQTIEELNKEQE 773 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~~keq~ 773 (826)
.+|..|+.+|+.++++|++..-+|+
T Consensus 14 ~~N~~Le~~v~~le~~Le~s~~~q~ 38 (72)
T 3cve_A 14 IRNKDLEGQLSEMEQRLEKSQSEQD 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777655443
No 106
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=67.07 E-value=10 Score=32.76 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=15.2
Q ss_pred chhhhhhhhhhhHHHHHHHHhH
Q 003366 720 GANLGQLKQENHELKKRLEKKE 741 (826)
Q Consensus 720 ~~~~~~~~~e~~~~~~~~~~~~ 741 (826)
+| +++|-.||++|||-|..--
T Consensus 8 e~-~q~ll~EN~~LreAlkqsN 28 (70)
T 3brv_B 8 ET-LQRCLEENQELRDAIRQSN 28 (70)
T ss_dssp CH-HHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHhHHHHHHHHHHH
Confidence 44 7788888888888775443
No 107
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=65.96 E-value=13 Score=38.95 Aligned_cols=83 Identities=24% Similarity=0.312 Sum_probs=49.3
Q ss_pred hhhhhhhhHHHHHHHHhHHhHHHHH----------------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 003366 724 GQLKQENHELKKRLEKKEGELQEER----------------ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRE 787 (826)
Q Consensus 724 ~~~~~e~~~~~~~~~~~~~~~~~e~----------------~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~ 787 (826)
.+|++--.+|+++|...-++|++.+ +-.++|++.-+.+++++|+...--+-+++-| +..=+
T Consensus 161 ~ql~~~a~~L~~~l~~~~eeLr~~L~p~ae~lr~~l~~~~e~l~~~l~~~~~~~~qq~e~f~~~~~p~~e~~---~~~l~ 237 (273)
T 3s84_A 161 FQMKKNAEELKARISASAEELRQRLAPLAEDVRGNLRGNTEGLQKSLAELGGHLDQQVEEFRRRVEPYGENF---NKALV 237 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH---HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhhHHHH---HHHHH
Confidence 3556666777777777767766555 2345556666666677777765555566666 45567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003366 788 REEENLRKKIKDASDTIQDLLD 809 (826)
Q Consensus 788 ~e~~~lr~kl~~a~~~i~~~~~ 809 (826)
+++|.||.||---+.++++-++
T Consensus 238 ~~~e~l~~~l~~~~~~~~~~~~ 259 (273)
T 3s84_A 238 QQMEQLRQKLGPHAGDVEGHLS 259 (273)
T ss_dssp HHHHHHHHHHSCC---------
T ss_pred HHHHHHHHHhCcchhhHHhhhh
Confidence 8889999999765666654433
No 108
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=64.93 E-value=27 Score=34.22 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=12.9
Q ss_pred hhhhhhhhhhHHHHHHHHhH
Q 003366 722 NLGQLKQENHELKKRLEKKE 741 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~ 741 (826)
.|.++++++..++.|+...|
T Consensus 21 ~L~~~R~el~~~~~ri~~lE 40 (154)
T 2ocy_A 21 QLNKSLKTIASQKAAIENYN 40 (154)
T ss_dssp HHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46667777776666665554
No 109
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=64.84 E-value=24 Score=35.48 Aligned_cols=87 Identities=15% Similarity=0.216 Sum_probs=53.9
Q ss_pred hhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HHH
Q 003366 729 ENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTI-EEL--NKEQESLIDIFAEERDRREREEENLRKKIKDA--SDT 803 (826)
Q Consensus 729 e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~-~~~--~keq~~li~~f~eer~rr~~e~~~lr~kl~~a--~~~ 803 (826)
++.++..+|...-..++..++..+.|+.+...-++++ .++ +--+.+|...|...-..-|.|=++|..+..+- ...
T Consensus 80 ~ll~l~~~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~~~~ls~~~sp~~L~~~L~~a~~e~eeeS~~l~~~F~~~~~e~d 159 (192)
T 2p22_C 80 QLEENFEDLHEQKDKVQALLENARILESKYVASWQDYHSEFSKKYGDIALKKKLEQNTKKLDEESSQLETTTRSIDSADD 159 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCCHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccch
Confidence 3344444444444445556666666766665444444 233 33466777778887777788888888877663 467
Q ss_pred HHHHHHHHhhhh
Q 003366 804 IQDLLDKIKLLE 815 (826)
Q Consensus 804 i~~~~~~~~~~~ 815 (826)
+.+.+.+.+..+
T Consensus 160 v~~Fl~~y~~~R 171 (192)
T 2p22_C 160 LDQFIKNYLDIR 171 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777766544
No 110
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=64.83 E-value=26 Score=29.10 Aligned_cols=37 Identities=24% Similarity=0.443 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 003366 762 QQTIEELNKEQESLIDIFAEERDRREREEENLRKKIK 798 (826)
Q Consensus 762 ~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~ 798 (826)
.-++.++.+|+..|--.+-||...|..=|+.+|+-|+
T Consensus 16 kDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k 52 (56)
T 2w6b_A 16 KDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLK 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444444445554433
No 111
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=64.69 E-value=35 Score=30.52 Aligned_cols=49 Identities=27% Similarity=0.420 Sum_probs=23.7
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 003366 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDT 803 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~ 803 (826)
||-+.||.|=..++.+|+.+.....+ .-..-.+.|-++||++|.++...
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~~~~------~~~~~ye~~i~~Lr~~i~~~~~e 71 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQGKS------RLGDLYEEEMRELRRQVDQLTND 71 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCC------CcHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555554432221 11222344555666666655543
No 112
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=64.01 E-value=23 Score=31.46 Aligned_cols=54 Identities=24% Similarity=0.263 Sum_probs=42.1
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLI 776 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li 776 (826)
.+-|-||...|+-|+..||.+-.+=--|.|+-.++|..+|++|++-+.|-+.|-
T Consensus 21 ~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~ 74 (81)
T 3qh9_A 21 AEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLH 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 456789999999999999887443335777777999999999998777655553
No 113
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=62.60 E-value=44 Score=31.87 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=19.7
Q ss_pred hhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHH
Q 003366 728 QENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQES 774 (826)
Q Consensus 728 ~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~ 774 (826)
+|.-.+++....++.++.......-+|-.+|..++-+++++.+|-+.
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~ 114 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKE 114 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443333333334444444444444444444333
No 114
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=62.38 E-value=37 Score=32.99 Aligned_cols=63 Identities=24% Similarity=0.279 Sum_probs=32.5
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 003366 733 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKD 799 (826)
Q Consensus 733 ~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~ 799 (826)
--..|...-+.|..|++.++.|.+.|+++.+..++.-.|.+-..+ |=.+.-....++|+||+.
T Consensus 80 A~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~le----eyK~Kl~rv~~vkkeL~~ 142 (152)
T 4fla_A 80 ACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLE----EYKQKLARVTQVRKELKS 142 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 333444444446667777777777776666655555444443322 223333344455555544
No 115
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=61.49 E-value=81 Score=35.92 Aligned_cols=81 Identities=17% Similarity=0.298 Sum_probs=48.1
Q ss_pred hHHHHHHHHhHHhH-------HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHH
Q 003366 731 HELKKRLEKKEGEL-------QEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRE--REEENLRKKIKDAS 801 (826)
Q Consensus 731 ~~~~~~~~~~~~~~-------~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~--~e~~~lr~kl~~a~ 801 (826)
.-|+.||.....++ +.-....--+..+.+.|+++++.+.||++.+-+..++-+.+-. ++.+.-.+.||+|+
T Consensus 352 ~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~KiAE~KrK~dE~~aIKDAV 431 (602)
T 1cii_A 352 DKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIAEEKRKQDELKATKDAI 431 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhHHHHHHHHH
Confidence 34666666555553 2222344456667789999999999999998666665433311 11122234577777
Q ss_pred HHHHHHHHHH
Q 003366 802 DTIQDLLDKI 811 (826)
Q Consensus 802 ~~i~~~~~~~ 811 (826)
..+-+..++|
T Consensus 432 kfTAdFykkI 441 (602)
T 1cii_A 432 NFTTEFLKSV 441 (602)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7765555444
No 116
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=61.10 E-value=47 Score=37.69 Aligned_cols=99 Identities=10% Similarity=0.193 Sum_probs=54.8
Q ss_pred hhhhhhhh--hHHHHHHHHhHHh--HHHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHH--------------H--
Q 003366 723 LGQLKQEN--HELKKRLEKKEGE--LQEER----ERCRSLEAQLKVMQQTIEELNKEQESLID--------------I-- 778 (826)
Q Consensus 723 ~~~~~~e~--~~~~~~~~~~~~~--~~~e~----~~~~~l~~~~~~~~~~~~~~~keq~~li~--------------~-- 778 (826)
|+.|++.- ..+++.|.++-.+ +-.++ ++.|.|..++++++++.+++.|+--.+.. +
T Consensus 10 i~~~r~~~~~~~v~~~~~~R~~~~~~~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~~~~~~~~~~~~~~~~~~ 89 (484)
T 3lss_A 10 IQLFRDETGANIIRESQRRRFADPDIVDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKE 89 (484)
T ss_dssp GGGGGSHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-------------
T ss_pred HHHHHcCCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccc
Confidence 66676652 4688888776433 22222 66777888888877777777665433322 0
Q ss_pred -------HHHHHhhh----HHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCc
Q 003366 779 -------FAEERDRR----ERE-EENLRKKIKDASDTIQDLLDKIKLLEKMKTPSI 822 (826)
Q Consensus 779 -------f~eer~rr----~~e-~~~lr~kl~~a~~~i~~~~~~~~~~~~~~~~~~ 822 (826)
=.|++..- -.| ...|+.+|++.-..+.++-++++.+- +..||+
T Consensus 90 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~i~~le~~~~~~~~~~~~~l-~~iPN~ 144 (484)
T 3lss_A 90 AYENGTLKGEQVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLM-LNVGNI 144 (484)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCCC
T ss_pred cccccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCC
Confidence 01233222 233 56666777766666666666666543 555654
No 117
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=60.96 E-value=65 Score=29.00 Aligned_cols=47 Identities=11% Similarity=0.189 Sum_probs=25.9
Q ss_pred hhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 003366 724 GQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNK 770 (826)
Q Consensus 724 ~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~k 770 (826)
.++..+...+..+..+.|+++..=--|+..|+.+|+.++.+|.+++.
T Consensus 26 e~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~ 72 (101)
T 3u1c_A 26 EQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSED 72 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666666544334555555555555555555543
No 118
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=60.95 E-value=89 Score=29.11 Aligned_cols=19 Identities=37% Similarity=0.403 Sum_probs=10.3
Q ss_pred hhhhhhhhhHHHHHHHHhH
Q 003366 723 LGQLKQENHELKKRLEKKE 741 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~ 741 (826)
..+|+-|..++|+++....
T Consensus 12 ~~~L~~E~e~~k~K~~~~~ 30 (111)
T 2v66_B 12 NQRLKYEVEALKEKLEHQY 30 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555665555443
No 119
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=60.43 E-value=29 Score=47.61 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=9.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 003366 784 DRREREEENLRKKIKDASDTI 804 (826)
Q Consensus 784 ~rr~~e~~~lr~kl~~a~~~i 804 (826)
+..-+|.+.|...++.+..++
T Consensus 2052 ~~~~~ek~~L~~e~~~~~~kl 2072 (3245)
T 3vkg_A 2052 ATLIRETEQIKTESSKVKNKV 2072 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555444444
No 120
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=60.33 E-value=56 Score=28.81 Aligned_cols=63 Identities=25% Similarity=0.304 Sum_probs=44.4
Q ss_pred HHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 003366 732 ELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDAS 801 (826)
Q Consensus 732 ~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~ 801 (826)
-|+.||...=+.-+-|++-.+.-+.+|..=+++|+++- .-+..|++.=+.+-+.|+.|.++-.
T Consensus 11 KLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi-------~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 11 KLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMV-------TRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666667777777777777777777777653 3445677777888888888887644
No 121
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=60.04 E-value=11 Score=41.83 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 003366 789 EEENLRKKIKDASDTIQDLLDKIKL 813 (826)
Q Consensus 789 e~~~lr~kl~~a~~~i~~~~~~~~~ 813 (826)
+++.+|+||- |+||||-+.|+.
T Consensus 42 ~~~~~rr~l~---n~~~~l~gnIrV 63 (412)
T 3u06_A 42 QSNMERKELH---NTVMDLRDNIRV 63 (412)
T ss_dssp HHHHHHHHHH---HHHHHHTCSEEE
T ss_pred HHHHHHHHHH---HHHHHhCCCEEE
Confidence 4566777764 678888776553
No 122
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=59.50 E-value=42 Score=28.96 Aligned_cols=46 Identities=24% Similarity=0.399 Sum_probs=23.6
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEEL 768 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~ 768 (826)
|.+|+.|.....+|+...+..+...-.++..++..+..++++|..+
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~l 53 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGT 53 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4445555555555555555555544444445555555555544433
No 123
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=59.03 E-value=27 Score=39.22 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=15.9
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQ 745 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~ 745 (826)
+.+|..+..+|+..|..++.++.
T Consensus 294 ~~~l~~~~~~L~~~l~~v~~~l~ 316 (483)
T 2j1d_G 294 MTELDKEISTLRSGLKAVETELE 316 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777777777766654
No 124
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=57.97 E-value=82 Score=36.31 Aligned_cols=96 Identities=17% Similarity=0.262 Sum_probs=41.4
Q ss_pred hhhhHHHHHHHHhHHhHHHHHHhhhcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHH
Q 003366 728 QENHELKKRLEKKEGELQEERERCRSLEAQ----LKVMQQTIEELNKEQESLIDIFAEERDRRE----REEENLRKKIKD 799 (826)
Q Consensus 728 ~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~----~~~~~~~~~~~~keq~~li~~f~eer~rr~----~e~~~lr~kl~~ 799 (826)
+.+..|+.||.++...+..=-...++-+.. .+.+++++...+ +.+..+.-+++|=+||- +|..+.-..|+.
T Consensus 57 kqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrv 135 (562)
T 3ghg_A 57 EVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQL 135 (562)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666655542211111211111 122233333333 33444555553333332 222222234444
Q ss_pred HHHHHHHHHHHHhhhh--------hcCCCCccc
Q 003366 800 ASDTIQDLLDKIKLLE--------KMKTPSIRA 824 (826)
Q Consensus 800 a~~~i~~~~~~~~~~~--------~~~~~~~~~ 824 (826)
--+.|.+++.+|..|| .-|+||-|+
T Consensus 136 LQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~ 168 (562)
T 3ghg_A 136 LQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRA 168 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 4445555555555554 356777664
No 125
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=57.63 E-value=40 Score=30.67 Aligned_cols=57 Identities=26% Similarity=0.398 Sum_probs=30.5
Q ss_pred hHHHHHHHHhHHhH---HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 003366 731 HELKKRLEKKEGEL---QEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRRE 787 (826)
Q Consensus 731 ~~~~~~~~~~~~~~---~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~ 787 (826)
..|+.+|.-.|+.| +.+.|+.|...++.+....+++-+...-+---+=|--||..|+
T Consensus 5 ~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadRE 64 (94)
T 3jsv_C 5 EDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHARE 64 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777776 4444555555555544444554444333333344555665553
No 126
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=57.14 E-value=94 Score=26.74 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=13.3
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH
Q 003366 733 LKKRLEKKEGELQEERERCRSLEAQLKVMQQ 763 (826)
Q Consensus 733 ~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~ 763 (826)
+|.+|..++.+...=.++.-.++.++.++.+
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~ 34 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEE 34 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555544443333333333333333333
No 127
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=56.22 E-value=96 Score=30.12 Aligned_cols=25 Identities=16% Similarity=0.457 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHh
Q 003366 788 REEENLRKKIKDAS----DTIQDLLDKIK 812 (826)
Q Consensus 788 ~e~~~lr~kl~~a~----~~i~~~~~~~~ 812 (826)
.=+|.|..|++..- ..|.+|+++|+
T Consensus 94 ~aeEkL~~KME~~kEnReA~laal~erLk 122 (143)
T 3ryc_E 94 MAKEKLAQKMESNKENREAHLAAMLERLQ 122 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33445555554322 12445555555
No 128
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=56.19 E-value=34 Score=32.15 Aligned_cols=45 Identities=29% Similarity=0.247 Sum_probs=31.4
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHH----HhhhcHHHHHHHHHHH
Q 003366 720 GANLGQLKQENHELKKRLEKKEGELQEER----ERCRSLEAQLKVMQQT 764 (826)
Q Consensus 720 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~----~~~~~l~~~~~~~~~~ 764 (826)
...|.+|+.|+..|+-.|.++-.+-++.. +.+-.|+.+|.+.++.
T Consensus 14 D~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34799999999999999988876655544 4555555555554443
No 129
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=56.12 E-value=31 Score=32.27 Aligned_cols=56 Identities=27% Similarity=0.343 Sum_probs=36.4
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEER----ERCRSLEAQLKVMQQTIEELNKEQESLIDI 778 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~----~~~~~l~~~~~~~~~~~~~~~keq~~li~~ 778 (826)
|..|+..+.+|...|...|.....++ .+.-.||.+|..+++.++....|=..|.||
T Consensus 54 l~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~v 113 (131)
T 3tnu_A 54 LQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDV 113 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555566665555544444 455567888888888887777776677776
No 130
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=55.64 E-value=10 Score=36.43 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003366 787 EREEENLRKKIKDASDTIQDLLDKIKLLE 815 (826)
Q Consensus 787 ~~e~~~lr~kl~~a~~~i~~~~~~~~~~~ 815 (826)
++..+.|+..|+|+-..|..|=+||..|.
T Consensus 102 e~r~~~L~~ql~e~e~ll~~lq~QL~~LK 130 (135)
T 2e7s_A 102 EILNKRLTEQLREKDMLLDTLTLQLKNLK 130 (135)
T ss_dssp HHHHHHHHHTTTHHHHCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677888888777777777776553
No 131
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=55.62 E-value=1.2e+02 Score=34.35 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=7.1
Q ss_pred hhhhhhhhhHHHH
Q 003366 723 LGQLKQENHELKK 735 (826)
Q Consensus 723 ~~~~~~e~~~~~~ 735 (826)
|.+|++...+|..
T Consensus 102 LqeLe~~l~~lsn 114 (464)
T 1m1j_B 102 LRDLKDRVAKFSD 114 (464)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 5555555555543
No 132
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=55.55 E-value=32 Score=32.01 Aligned_cols=56 Identities=18% Similarity=0.293 Sum_probs=34.4
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEER----ERCRSLEAQLKVMQQTIEELNKEQESLIDI 778 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~----~~~~~l~~~~~~~~~~~~~~~keq~~li~~ 778 (826)
|..|+..+.+|...|...|.....++ .+.-.||.+|..+++.++....|=..|.||
T Consensus 52 l~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Llnv 111 (129)
T 3tnu_B 52 IDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMNT 111 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555554444444 455667888888888877777776677776
No 133
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=55.42 E-value=44 Score=38.74 Aligned_cols=20 Identities=25% Similarity=0.399 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 003366 513 VLARLEARLIQMQKDYWNNN 532 (826)
Q Consensus 513 l~~rLe~~L~qm~~~YW~~~ 532 (826)
..++|+..|..+..+|+..|
T Consensus 380 ~~~~L~~~i~~~~~~~~~~N 399 (592)
T 1f5n_A 380 FQKELAAQLEKKRDDFCKQN 399 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34667888888887887544
No 134
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=54.95 E-value=28 Score=32.96 Aligned_cols=58 Identities=21% Similarity=0.297 Sum_probs=31.4
Q ss_pred HHHH-HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 003366 745 QEER-ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDT 803 (826)
Q Consensus 745 ~~e~-~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~ 803 (826)
.+|| ..|++|+.+|+|+++.+.-+.+.-..- .|=..|-.+|.+-.+.+|.++++..+.
T Consensus 69 ~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF-~l~~~Ei~~Rr~fV~~~r~~I~~mk~~ 127 (130)
T 4dnd_A 69 TNELRNGLRSIEWDLEDLEETIGIVEANPGKF-KLPAGDLQERKVFVERMREAVQEMKDH 127 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 566666666666666555433221110 122456666767777777666655443
No 135
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=54.74 E-value=1.3e+02 Score=31.51 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=12.7
Q ss_pred hhhhhhhhHHHHHHHHhHHhHH
Q 003366 724 GQLKQENHELKKRLEKKEGELQ 745 (826)
Q Consensus 724 ~~~~~e~~~~~~~~~~~~~~~~ 745 (826)
.+|..+..+|+.+|...-++++
T Consensus 18 ~~l~~~~eel~~~L~P~~~~l~ 39 (273)
T 3s84_A 18 EEIGKELEELRARLLPHANEVS 39 (273)
T ss_dssp HHHHHHHHHHHHHHGGGHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHH
Confidence 3455556666666666555554
No 136
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=54.68 E-value=56 Score=29.65 Aligned_cols=65 Identities=22% Similarity=0.392 Sum_probs=43.8
Q ss_pred hHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003366 743 ELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEER--DRREREEENLRKKIKDASDTIQDLLDKIK 812 (826)
Q Consensus 743 ~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer--~rr~~e~~~lr~kl~~a~~~i~~~~~~~~ 812 (826)
-+.+|....+.+..+++.++.+|+.++ ..|-|+ |++ +..|.-.....++|+|++--|.|+++...
T Consensus 13 ll~~E~~l~~gv~~~i~~Lk~eL~~m~---a~L~da--~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~ 79 (115)
T 3qfl_A 13 LLTEEFKLHKGVKKNIEDLGKELESMN---AALIKI--GEVPREQLDSQDKLWADEVRELSYVIEDVVDKFL 79 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--TTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHH---HHHHHH--HHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666667777776666654 334443 444 34577788889999999988888887654
No 137
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=54.58 E-value=77 Score=27.52 Aligned_cols=39 Identities=21% Similarity=0.409 Sum_probs=24.5
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVM 761 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~ 761 (826)
|+.+..+|.+|++|+..+|..|+.=+.+...+.++|+.+
T Consensus 9 Lq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~ 47 (72)
T 3cve_A 9 LQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTL 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677778888888888777776654444444444444333
No 138
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=53.32 E-value=30 Score=35.78 Aligned_cols=51 Identities=22% Similarity=0.205 Sum_probs=45.3
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 003366 720 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNK 770 (826)
Q Consensus 720 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~k 770 (826)
+++...|-..-..+|+|+.-++..|++.++.+.|+..+|++.+|++.++..
T Consensus 163 e~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~ 213 (228)
T 3q0x_A 163 SVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLRE 213 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888889999999999999999999999999999999999988753
No 139
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=52.24 E-value=35 Score=32.19 Aligned_cols=9 Identities=22% Similarity=0.405 Sum_probs=4.4
Q ss_pred HHHHHhHHh
Q 003366 735 KRLEKKEGE 743 (826)
Q Consensus 735 ~~~~~~~~~ 743 (826)
++|.++|..
T Consensus 19 q~L~~~E~q 27 (119)
T 3etw_A 19 QNLANQEEA 27 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 345555544
No 140
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=52.17 E-value=53 Score=37.81 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 003366 792 NLRKKIKDASDTIQDLLDKIKLLE 815 (826)
Q Consensus 792 ~lr~kl~~a~~~i~~~~~~~~~~~ 815 (826)
.||+++..--.+|+.-+.+|++|+
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQ 137 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQ 137 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555544
No 141
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=51.56 E-value=1.2e+02 Score=27.42 Aligned_cols=62 Identities=24% Similarity=0.403 Sum_probs=36.0
Q ss_pred HHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 003366 733 LKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQ 805 (826)
Q Consensus 733 ~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~ 805 (826)
|-.||..+|.+|+.|.--...|..|-++++..|..+..| .++|+.|-. .|.-||.||...|.
T Consensus 2 lan~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e--------~~~R~~~i~---el~akidd~Lk~l~ 63 (101)
T 1d7m_A 2 MANRLAGLENSLESEKVSREQLIKQKDQLNSLLASLESE--------GAEREKRLR---ELEAKLDETLKNLE 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH---HHHHHHHHHHHccc
Confidence 446777888888887654444555544444444333222 344554433 45667888887775
No 142
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=50.93 E-value=15 Score=38.59 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=17.9
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 003366 749 ERCRSLEAQLKVMQQTIEELNKEQESL 775 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~~keq~~l 775 (826)
.+++.|.+.|.+++++|+.++.|-+.|
T Consensus 68 arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 68 ARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666667777777777766666655
No 143
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=50.82 E-value=1.2e+02 Score=33.76 Aligned_cols=31 Identities=29% Similarity=0.265 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 003366 786 REREEENLRKKIKDASDTIQDLLDKIKLLEK 816 (826)
Q Consensus 786 r~~e~~~lr~kl~~a~~~i~~~~~~~~~~~~ 816 (826)
.+.+.+.|+..|+.....|++|.++|..++.
T Consensus 103 ~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 103 HENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3456678888888888999999988887764
No 144
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=49.10 E-value=1.6e+02 Score=29.16 Aligned_cols=82 Identities=23% Similarity=0.362 Sum_probs=60.0
Q ss_pred HHHHHHhHHhHHHHH---HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-------HHHHH
Q 003366 734 KKRLEKKEGELQEER---ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIK-------DASDT 803 (826)
Q Consensus 734 ~~~~~~~~~~~~~e~---~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~-------~a~~~ 803 (826)
...|..+.+-|+.|- .|.|...+++.-+.+.+|..+.|-..-+..+...|+-=++|..+|..-|. -++.+
T Consensus 12 ekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~ 91 (168)
T 3o0z_A 12 QKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEM 91 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555 46666777777777889999999888888888899988888888876664 46778
Q ss_pred HHHHHHHHhhhh
Q 003366 804 IQDLLDKIKLLE 815 (826)
Q Consensus 804 i~~~~~~~~~~~ 815 (826)
|.||-.+|..|.
T Consensus 92 ~~elq~ri~~L~ 103 (168)
T 3o0z_A 92 IGDLQARITSLQ 103 (168)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888877776654
No 145
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=49.01 E-value=63 Score=27.96 Aligned_cols=48 Identities=23% Similarity=0.276 Sum_probs=35.5
Q ss_pred hhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 003366 724 GQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKE 771 (826)
Q Consensus 724 ~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~ke 771 (826)
..||+-|..||+|...+..=-.+.++...-|+-++++|...++.+..|
T Consensus 22 eAlkqsNq~mkeR~eeL~~wqekQkeErefl~~kf~EAr~lv~~L~~E 69 (70)
T 3brv_B 22 DAIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEARKLVERLGLE 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 356778888888888777666666677777888888888887777654
No 146
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=48.64 E-value=56 Score=27.56 Aligned_cols=48 Identities=35% Similarity=0.419 Sum_probs=43.7
Q ss_pred hhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 003366 728 QENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESL 775 (826)
Q Consensus 728 ~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~l 775 (826)
+|--|+|.-|---|+.+|+=+.-+-+|-++|.-+|++|.++..|+-.|
T Consensus 13 qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 13 QEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 677899999999999999999999999999999999999999998766
No 147
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=48.36 E-value=66 Score=28.52 Aligned_cols=54 Identities=22% Similarity=0.317 Sum_probs=43.2
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 003366 722 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESL 775 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~l 775 (826)
++.||......+=+.+.-++.++..-.+|+-.|..+.++|+..-+.+..|.+-|
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qL 60 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHL 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 688888888888888888777887777899999999999888777777665544
No 148
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=48.17 E-value=1.8e+02 Score=29.27 Aligned_cols=110 Identities=11% Similarity=0.162 Sum_probs=67.9
Q ss_pred CCcccccccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHH-------------------------------HHHH
Q 003366 711 EHFLSDCSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLE-------------------------------AQLK 759 (826)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~-------------------------------~~~~ 759 (826)
+-..|.|..++.|+.+.++...|+.+|+++....+.=.+.-+.+. .++-
T Consensus 11 e~~~DSP~FR~~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~~~~~L~~f~ 90 (265)
T 2q12_A 11 ETLEDSPQTRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFS 90 (265)
T ss_dssp --CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCCC-----CHHHHHHHHHH
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHH
Confidence 344566888999999999999999999998766422221111111 1222
Q ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 003366 760 VMQQTIEE-----LNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMKTP 820 (826)
Q Consensus 760 ~~~~~~~~-----~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~~~~~~ 820 (826)
++.+.|+. +.+-+..+++-+..=++.-=.+...+|+++..++..-...+++...+++.|.+
T Consensus 91 ~~l~ei~~~~~~l~~~~~~~~~~PL~~f~~~dlk~~ke~kk~fdk~~~~yd~al~k~~~~~k~k~~ 156 (265)
T 2q12_A 91 KVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKREN 156 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 22222221 12333344444444344444566788999999999999999998888877643
No 149
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=47.74 E-value=37 Score=37.64 Aligned_cols=50 Identities=20% Similarity=0.209 Sum_probs=22.4
Q ss_pred hhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 726 LKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEE 782 (826)
Q Consensus 726 ~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~ee 782 (826)
|++|..+|+|++.++++ +++.+++++++++++|-+.+.+-..|-+.+.|-
T Consensus 8 l~~el~~~~~~~~~l~~-------~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLR-------CNEQQAAELETCKEQLFQSNMERKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444333 333444445554444444444444444444433
No 150
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=47.23 E-value=1.1e+02 Score=27.16 Aligned_cols=49 Identities=20% Similarity=0.438 Sum_probs=28.2
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEERERCRS-LEAQLKVMQQTIEELNKEQES 774 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~-l~~~~~~~~~~~~~~~keq~~ 774 (826)
...|.++|..|...+....+. +.....+ -+..+.+++++|+.+..|...
T Consensus 25 VR~LEqqN~~Le~~i~~l~~~---~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~ 74 (93)
T 3s4r_A 25 VRFLEQQNKILLAELEQLKGQ---GKSRLGDLYEEEMRELRRQVDQLTNDKAR 74 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc---cCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888887666444321 2222222 366667777777766665443
No 151
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=47.21 E-value=50 Score=26.87 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=19.0
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 003366 749 ERCRSLEAQLKVMQQTIEELNKEQESL 775 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~~keq~~l 775 (826)
.+|..|.+-|+++.++|+.|+.|-+.|
T Consensus 23 ~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 23 ARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566777777777777777777666554
No 152
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=47.17 E-value=1.7e+02 Score=26.78 Aligned_cols=29 Identities=10% Similarity=0.181 Sum_probs=14.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 003366 779 FAEERDRREREEENLRKKIKDASDTIQDL 807 (826)
Q Consensus 779 f~eer~rr~~e~~~lr~kl~~a~~~i~~~ 807 (826)
|-+.+++-.+++..|-.+|......-+.|
T Consensus 73 lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L 101 (107)
T 2no2_A 73 LQGSLETSAQSEANWAAEFAELEKERDSL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554444444333
No 153
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=46.54 E-value=51 Score=33.36 Aligned_cols=50 Identities=20% Similarity=0.324 Sum_probs=36.0
Q ss_pred hHHHHHHHHhHHhHHHHH-------HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 731 HELKKRLEKKEGELQEER-------ERCRSLEAQLKVMQQTIEELNKEQESLIDIFA 780 (826)
Q Consensus 731 ~~~~~~~~~~~~~~~~e~-------~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~ 780 (826)
-+|..||.++|-.|...- +|.+.|..|++||+.=-|-++.-...+-+|++
T Consensus 83 LsLs~RLaRvenaL~~~~~Er~sL~~K~~~L~~Q~EDAkeLKe~ldRRe~~V~~iL~ 139 (190)
T 3thf_A 83 LSLSERLAQTESSLETRQQERGALESKRDLLYEQMEEAQRLKSDIERRGVSIAGLLA 139 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999984433 66666677777776666666666666666664
No 154
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=45.91 E-value=54 Score=25.82 Aligned_cols=13 Identities=62% Similarity=0.871 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHH
Q 003366 787 EREEENLRKKIKD 799 (826)
Q Consensus 787 ~~e~~~lr~kl~~ 799 (826)
+.|-.|||+|+++
T Consensus 37 ekeianlrkkiee 49 (49)
T 3he5_A 37 EKEIANLRKKIEE 49 (49)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcC
Confidence 4677889988764
No 155
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=45.83 E-value=1.9e+02 Score=28.12 Aligned_cols=49 Identities=16% Similarity=0.327 Sum_probs=27.3
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHH-----HhhhcHHHHHHHHHHHHHHHHH
Q 003366 722 NLGQLKQENHELKKRLEKKEGELQEER-----ERCRSLEAQLKVMQQTIEELNK 770 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~~~~~~e~-----~~~~~l~~~~~~~~~~~~~~~k 770 (826)
+..+|.++...|+++|.+=-++++..+ +-...+...+++++++|+-.-.
T Consensus 72 ~~~~l~~~~~~Lr~~l~kdlee~r~~l~P~~~e~~~~~~~~~e~lr~~l~Py~~ 125 (185)
T 3r2p_A 72 FWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRA 125 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455555666667777666656555544 3344455555555555554433
No 156
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=45.41 E-value=29 Score=35.43 Aligned_cols=47 Identities=30% Similarity=0.466 Sum_probs=37.5
Q ss_pred hhhhhhhhHHHHHHHHhHHh---HHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 003366 724 GQLKQENHELKKRLEKKEGE---LQEERERCRSLEAQLKVMQQTIEELNK 770 (826)
Q Consensus 724 ~~~~~e~~~~~~~~~~~~~~---~~~e~~~~~~l~~~~~~~~~~~~~~~k 770 (826)
..--+||..|.++|..++++ |..|.+.+|.|.++++.+-.-|+++..
T Consensus 111 ~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~~ 160 (209)
T 2wvr_A 111 YEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNG 160 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33347999999999999988 477778999999999888877777653
No 157
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=45.25 E-value=36 Score=28.23 Aligned_cols=48 Identities=29% Similarity=0.352 Sum_probs=36.7
Q ss_pred ccccccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHH
Q 003366 714 LSDCSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVM 761 (826)
Q Consensus 714 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~ 761 (826)
|.+.||-...=+|++|..+|+.-.+++...|..|.--+|.||.=+-.+
T Consensus 3 veEKSlVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 3 LGSKSLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566889999999999999999999988887777777655444
No 158
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=44.62 E-value=1.1e+02 Score=28.37 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHhhh
Q 003366 789 EEENLRKKIKDASD-------TIQDLLDKIKLL 814 (826)
Q Consensus 789 e~~~lr~kl~~a~~-------~i~~~~~~~~~~ 814 (826)
+-..||+=+.+|.- .|+-|.|.|.-+
T Consensus 70 di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FL 102 (119)
T 3ol1_A 70 TLQSFRQDVDNASLARLDLERKVESLQEEIAFL 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456665555443 345555554433
No 159
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=44.11 E-value=34 Score=33.91 Aligned_cols=27 Identities=15% Similarity=0.102 Sum_probs=13.1
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHH
Q 003366 722 NLGQLKQENHELKKRLEKKEGELQEER 748 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~~~~~~e~ 748 (826)
+.++.+.+..+|++.|..+..+|+.++
T Consensus 79 I~~e~r~~~~~Lr~ql~akr~EL~aL~ 105 (175)
T 3lay_A 79 IYDDYYTQTSALRQQLISKRYEYNALL 105 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555554444
No 160
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=43.81 E-value=1.8e+02 Score=28.44 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=25.0
Q ss_pred HHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 736 RLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLI 776 (826)
Q Consensus 736 ~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li 776 (826)
.|..++.++.+=..+++.|++.+++-.+-++.++-|-.+|-
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLq 109 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGT 109 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444446777777777776666776666666653
No 161
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=42.95 E-value=52 Score=28.64 Aligned_cols=39 Identities=26% Similarity=0.340 Sum_probs=20.4
Q ss_pred hHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 003366 731 HELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELN 769 (826)
Q Consensus 731 ~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~ 769 (826)
.+|++=|.++.++|+..=+..+.|+.+|++....|.++.
T Consensus 22 ~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lq 60 (72)
T 3nmd_A 22 RDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQ 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666665444444555555544444444433
No 162
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=42.19 E-value=1.3e+02 Score=26.11 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=17.0
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEE 747 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e 747 (826)
|..|..|+.+|-++|+..+++++..
T Consensus 6 v~~l~~E~eel~~klk~~~ee~~~~ 30 (71)
T 1uix_A 6 VANLANEKEELNNKLKEAQEQLSRL 30 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777666543
No 163
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=41.90 E-value=1e+02 Score=29.86 Aligned_cols=16 Identities=13% Similarity=0.407 Sum_probs=7.5
Q ss_pred hhhHHHHHHHHHHHHH
Q 003366 784 DRREREEENLRKKIKD 799 (826)
Q Consensus 784 ~rr~~e~~~lr~kl~~ 799 (826)
.-|..=-..|+.||++
T Consensus 108 EnReA~laal~erLke 123 (143)
T 3ryc_E 108 ENREAHLAAMLERLQE 123 (143)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHH
Confidence 3333344445555554
No 164
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=40.68 E-value=33 Score=31.47 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=20.9
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHH
Q 003366 720 GANLGQLKQENHELKKRLEKKEGELQE 746 (826)
Q Consensus 720 ~~~~~~~~~e~~~~~~~~~~~~~~~~~ 746 (826)
..-|+.|+.||..|++++..+|..|.+
T Consensus 18 r~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 18 RLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334788888888888888888877744
No 165
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=39.86 E-value=2.2e+02 Score=25.98 Aligned_cols=51 Identities=22% Similarity=0.372 Sum_probs=26.1
Q ss_pred hhhhHHHHHHHHhHHhHHHHHHhhhcHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 003366 728 QENHELKKRLEKKEGELQEERERCRSLEAQL-------KVMQQTIEELNKEQESLIDI 778 (826)
Q Consensus 728 ~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~-------~~~~~~~~~~~keq~~li~~ 778 (826)
++...||++|...+..+..--..++.|..+| .+|++....+++|-|.|--.
T Consensus 5 ~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTas 62 (97)
T 2eqb_B 5 SNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 62 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333223333344333 45666777777888777543
No 166
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=39.60 E-value=1.1e+02 Score=29.51 Aligned_cols=23 Identities=13% Similarity=0.078 Sum_probs=15.0
Q ss_pred chhhhhhhhhhhHHHHHHHHhHH
Q 003366 720 GANLGQLKQENHELKKRLEKKEG 742 (826)
Q Consensus 720 ~~~~~~~~~e~~~~~~~~~~~~~ 742 (826)
+.-|-+++.++.+.+.|+...|.
T Consensus 7 Ed~L~~~r~~l~~~~~~~~~le~ 29 (135)
T 2e7s_A 7 EEQLNKSLKTIASQKAAIENYNQ 29 (135)
T ss_dssp CSTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466777777777777766554
No 167
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=39.17 E-value=69 Score=35.27 Aligned_cols=52 Identities=15% Similarity=0.275 Sum_probs=25.7
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE 781 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~e 781 (826)
|.+|++|..+|++.+..+++ ..+.|+.+++++++++.+...+-..|-+.+.|
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~e 56 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKE-------KIKDTELGMKELNEILIKEETVRRTLHNELQE 56 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444433333 33455556666666655555544455444444
No 168
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=38.30 E-value=15 Score=42.37 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=2.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 771 EQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLD 809 (826)
Q Consensus 771 eq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~ 809 (826)
+++-.++.+.|++.+...|.+.|..|-.+|-..++.|..
T Consensus 360 ~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~ 398 (575)
T 2i1j_A 360 EAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEE 398 (575)
T ss_dssp HHHHC----------------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556667777777777777777777777666666554
No 169
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=38.13 E-value=1.1e+02 Score=28.19 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=14.2
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHH
Q 003366 745 QEERERCRSLEAQLKVMQQTIEE 767 (826)
Q Consensus 745 ~~e~~~~~~l~~~~~~~~~~~~~ 767 (826)
+.|+.++.++|..+..+++.+.+
T Consensus 58 E~E~~~r~~~E~di~~lrK~lD~ 80 (119)
T 3ol1_A 58 QEEMLQREEAENTLQSFRQDVDN 80 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcccH
Confidence 44556677777776666665544
No 170
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=38.06 E-value=67 Score=34.07 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 003366 786 REREEENLRKKIKDASDTI 804 (826)
Q Consensus 786 r~~e~~~lr~kl~~a~~~i 804 (826)
+.+-||.++.|.++|-.+-
T Consensus 175 ~r~~EEea~~K~eeAd~~Y 193 (279)
T 3qwe_A 175 RRRSREEAQAKAQEAEALY 193 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHH
Confidence 4444555666677665543
No 171
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=37.56 E-value=82 Score=29.76 Aligned_cols=8 Identities=38% Similarity=0.389 Sum_probs=3.7
Q ss_pred hhhhhhhh
Q 003366 723 LGQLKQEN 730 (826)
Q Consensus 723 ~~~~~~e~ 730 (826)
+++|..|.
T Consensus 11 l~~LEaey 18 (119)
T 2avr_X 11 LQALDAEY 18 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45554443
No 172
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=37.47 E-value=1e+02 Score=28.42 Aligned_cols=52 Identities=27% Similarity=0.415 Sum_probs=34.2
Q ss_pred hhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 725 QLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLI 776 (826)
Q Consensus 725 ~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li 776 (826)
.|-+|--.|..|+.++|++-.+-+...+....++++++.+++.+.-|...|.
T Consensus 34 ELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 34 ELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3566777788888887777544443345556777777777777776665553
No 173
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=37.38 E-value=26 Score=25.38 Aligned_cols=21 Identities=29% Similarity=0.779 Sum_probs=18.2
Q ss_pred HhhhcHHHHHHHHHHHHHHHH
Q 003366 749 ERCRSLEAQLKVMQQTIEELN 769 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~~ 769 (826)
.||..||..||.++++||.+.
T Consensus 8 kkcaalesklqalekkleale 28 (31)
T 3ljm_A 8 KKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999998763
No 174
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=37.18 E-value=58 Score=31.57 Aligned_cols=18 Identities=11% Similarity=0.036 Sum_probs=5.3
Q ss_pred hhhhhhhhhHHHHHHHHh
Q 003366 723 LGQLKQENHELKKRLEKK 740 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~ 740 (826)
.++|.++..++.++|.+.
T Consensus 19 ~~~l~~~l~~~~~~l~~~ 36 (268)
T 4ew8_A 19 SHMLQSALADRSAALAEA 36 (268)
T ss_dssp ------CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444433
No 175
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=36.25 E-value=19 Score=32.59 Aligned_cols=38 Identities=24% Similarity=0.231 Sum_probs=29.6
Q ss_pred ccccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhc
Q 003366 716 DCSLGANLGQLKQENHELKKRLEKKEGELQEERERCRS 753 (826)
Q Consensus 716 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~ 753 (826)
+|.+.++++.+-+|..-+-|=|+++|-..+...+-+++
T Consensus 32 dP~lk~~L~Kig~Ei~~l~eLLn~~E~eV~~Qe~~~~s 69 (91)
T 4aj5_A 32 EPTLKTVLNKIGDEIIVINELLNKLELEIQYQEQTNNS 69 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999988887655544443
No 176
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=36.25 E-value=4.3e+02 Score=28.26 Aligned_cols=111 Identities=17% Similarity=0.160 Sum_probs=65.7
Q ss_pred CCCcccccccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhh-------cHHHHH---------------------HHH
Q 003366 710 PEHFLSDCSLGANLGQLKQENHELKKRLEKKEGELQEERERCR-------SLEAQL---------------------KVM 761 (826)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~-------~l~~~~---------------------~~~ 761 (826)
.+-.+|.|..++.|..+.++...|+.+|+++-....+=.+-.+ .+-..| ...
T Consensus 33 ~Ea~~DSP~FRa~l~~~E~~~~~l~~~l~kl~k~~~~~~~~~~~~~~a~~~f~~~l~~~~~~~~~~~~~d~~~~~~l~~f 112 (407)
T 4h8s_A 33 EEALQDSPQTRSLLSVFEEDAGTLTDYTNQLLQAMQRVYGAQNEMCLATQQLSKQLLAYEKQNFALGKGDEEVISTLHYF 112 (407)
T ss_dssp TTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSCCC----CHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcHHHHHHHHHH
Confidence 3455677889999999999999999999887766422111111 111111 111
Q ss_pred HHHHHHHH--------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 003366 762 QQTIEELN--------KEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMKTP 820 (826)
Q Consensus 762 ~~~~~~~~--------keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~~~~~~ 820 (826)
..-+.++. .-+..+|+-+..=++..-.+-+.+|++++.++..-...+++.-.+.+.|.+
T Consensus 113 ~~~~~ei~~~~~~L~~~~~~~i~~pL~~f~k~di~~~ke~kK~Fek~~~~Yd~~l~Ky~~~~k~k~~ 179 (407)
T 4h8s_A 113 SKVVDELNLLHTELAKQLADTMVLPIIQFREKDLTEVSTLKDLFGLASNEHDLSMAKYSRLPKKKEN 179 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCc
Confidence 11122222 222333333333343344456678999999999999999998877776654
No 177
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=34.72 E-value=86 Score=29.15 Aligned_cols=32 Identities=28% Similarity=0.497 Sum_probs=17.4
Q ss_pred hhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHH
Q 003366 728 QENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIE 766 (826)
Q Consensus 728 ~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~ 766 (826)
+|-..|-||..+.|.++. .|.+++++++++|+
T Consensus 4 ~e~~~~~~~~~~~e~e~~-------~l~~~~~el~~~l~ 35 (125)
T 1joc_A 4 DERRALLERCLKGEGEIE-------KLQTKVLELQRKLD 35 (125)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHH
Confidence 444555666666666543 34455555555554
No 178
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=34.62 E-value=72 Score=34.48 Aligned_cols=39 Identities=15% Similarity=0.121 Sum_probs=16.6
Q ss_pred hhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHH
Q 003366 730 NHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEEL 768 (826)
Q Consensus 730 ~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~ 768 (826)
++.|.++|.++|..+..--...+.|+++|+.++.+|.++
T Consensus 7 ~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l 45 (323)
T 1lwu_C 7 VQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRL 45 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445554444443332233344444444444444443
No 179
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=34.58 E-value=1.3e+02 Score=28.81 Aligned_cols=68 Identities=28% Similarity=0.381 Sum_probs=40.5
Q ss_pred HhhhcHHHHH-----HH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hcCCCC
Q 003366 749 ERCRSLEAQL-----KV-MQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLE-KMKTPS 821 (826)
Q Consensus 749 ~~~~~l~~~~-----~~-~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~-~~~~~~ 821 (826)
+|.+-|+++. .. -+.+|.+.-+|--.-|+..-||| -|.|...-+.+ -.|.+|-.+|+-+. +.+-|.
T Consensus 41 eKkkiLaER~~pL~id~ls~~~L~e~~keLh~~I~~LEeEK--YDlE~kvkkq~-----yEI~dL~~rV~Dl~gKfkKP~ 113 (133)
T 1j1d_C 41 EKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEER--YDIEAKVTKNI-----TEIADLTQKIFDLRGKFKRPT 113 (133)
T ss_dssp HHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-----HHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHcc-----hHHHHHHHHHHHHHcccCCCc
Confidence 5555555554 22 14567777788778888877664 56666554444 46999999999885 466776
Q ss_pred cc
Q 003366 822 IR 823 (826)
Q Consensus 822 ~~ 823 (826)
+|
T Consensus 114 Lk 115 (133)
T 1j1d_C 114 LR 115 (133)
T ss_dssp -C
T ss_pred cC
Confidence 65
No 180
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=34.01 E-value=2.8e+02 Score=30.97 Aligned_cols=16 Identities=13% Similarity=0.279 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhhhhhc
Q 003366 802 DTIQDLLDKIKLLEKM 817 (826)
Q Consensus 802 ~~i~~~~~~~~~~~~~ 817 (826)
..+++||+.|+...-.
T Consensus 428 gv~D~Ll~~l~sg~~f 443 (457)
T 3obv_E 428 GVMDSLLEALQSGAAF 443 (457)
T ss_dssp CHHHHHHHHHHHSTTC
T ss_pred ccHHHHHHHHhcchhh
Confidence 4678888888866543
No 181
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=33.58 E-value=45 Score=28.71 Aligned_cols=30 Identities=30% Similarity=0.546 Sum_probs=23.2
Q ss_pred HHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 741 EGELQEERERCRSLEAQLKVMQQTIEELNKEQESLI 776 (826)
Q Consensus 741 ~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li 776 (826)
-+++++||++||.+..+|| +|+|+|---+|
T Consensus 28 vgdiEqeLe~Ck~sIrrLE------~evn~ErFrmI 57 (72)
T 1k1f_A 28 VGDIEQELERAKASIRRLE------QEVNQERFRMI 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH------HHHhHHHHHHH
Confidence 3678899999999888776 36777776665
No 182
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=33.32 E-value=1.1e+02 Score=26.58 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 003366 771 EQESLIDIFAEERDRREREEENLRKKI 797 (826)
Q Consensus 771 eq~~li~~f~eer~rr~~e~~~lr~kl 797 (826)
+++.+|+..-.+-+.+|.|-.+|+..|
T Consensus 37 ~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 37 QRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555544
No 183
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=33.08 E-value=1.6e+02 Score=34.19 Aligned_cols=16 Identities=38% Similarity=0.418 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 003366 795 KKIKDASDTIQDLLDK 810 (826)
Q Consensus 795 ~kl~~a~~~i~~~~~~ 810 (826)
+|.+.-.+.|++|-.+
T Consensus 567 ~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 567 KESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444445556666555
No 184
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=32.95 E-value=26 Score=32.45 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=1.6
Q ss_pred hhhhhhhhHHHHHHHHhHHhHHH
Q 003366 724 GQLKQENHELKKRLEKKEGELQE 746 (826)
Q Consensus 724 ~~~~~e~~~~~~~~~~~~~~~~~ 746 (826)
++|+.+...+...|.+++.+|+.
T Consensus 26 ~~l~~~~~~~~~el~~~~~el~~ 48 (143)
T 1u2m_A 26 NTLENEFKGRASELQRMETDLQA 48 (143)
T ss_dssp TTTC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 185
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=32.86 E-value=3.6e+02 Score=28.66 Aligned_cols=109 Identities=9% Similarity=0.134 Sum_probs=63.8
Q ss_pred CcccccccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhh-------hcHH------------------------HHHHH
Q 003366 712 HFLSDCSLGANLGQLKQENHELKKRLEKKEGELQEERERC-------RSLE------------------------AQLKV 760 (826)
Q Consensus 712 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~-------~~l~------------------------~~~~~ 760 (826)
-.+|.|..++.|+.+.++...|+.+|+++-....+=.+.- +.+. .++-+
T Consensus 12 ~~~DSP~FR~~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~v~~~l~~f~~ 91 (385)
T 2q13_A 12 TLEDSPQTRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSK 91 (385)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCC---CCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHHH
Confidence 3466688899999999999999999998766642211111 1111 11112
Q ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 003366 761 MQQTIEELN-----KEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMKTP 820 (826)
Q Consensus 761 ~~~~~~~~~-----keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~~~~~~ 820 (826)
+.+.|+... +-+..+++-+..=++..=.+-..+|++++.++..-...+++.-.+++.|.+
T Consensus 92 ~~~ei~~~~~~l~~~~~~~~~~PL~~f~~~di~~~ke~kk~fek~~~~yd~al~k~~~~~k~k~~ 156 (385)
T 2q13_A 92 VIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKREN 156 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCch
Confidence 222222211 111222222332333333455678999999999999999998888877655
No 186
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=32.79 E-value=2.5e+02 Score=24.57 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=19.2
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHH-HhhhcHHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEER-ERCRSLEAQLKVMQQT 764 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~-~~~~~l~~~~~~~~~~ 764 (826)
|+++.+|...|++.|.+.+. .+.|+ +++..|..+-.+++.+
T Consensus 16 m~~~eeel~~lke~l~k~e~-~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 16 MKEQLKQMDKMKEDLAKTER-IKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666554332 22333 4444444444444433
No 187
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=32.29 E-value=52 Score=29.35 Aligned_cols=15 Identities=40% Similarity=0.731 Sum_probs=6.2
Q ss_pred hhhhHHHHHHHHhHH
Q 003366 728 QENHELKKRLEKKEG 742 (826)
Q Consensus 728 ~e~~~~~~~~~~~~~ 742 (826)
+||..|.+++..+++
T Consensus 46 ~EN~~Lh~~ie~l~e 60 (83)
T 1uii_A 46 KENEKLHKEIEQKDN 60 (83)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 188
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=31.84 E-value=2.2e+02 Score=26.29 Aligned_cols=54 Identities=20% Similarity=0.149 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCc
Q 003366 762 QQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMKTPSI 822 (826)
Q Consensus 762 ~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~~~~~~~~ 822 (826)
..+|.+.-+|--.-|+.+-||| -|.|+..-+.+ -.|.+|-.+|+.+.+.+-|..
T Consensus 44 ~~~L~e~~keLh~~I~~LEeEK--YDlE~kv~kq~-----yEI~eL~~rV~dlgKf~Kp~~ 97 (106)
T 1j1d_B 44 EDQLREKAKELWQTIYNLEAEK--FDLQEKFKQQK-----YEINVLRNRINDNQKVSKTRG 97 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-----HHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHhhh-----HHHHHHHHHHHHhcCccCCCC
Confidence 3467777777777777776654 56665554444 469999999999977777654
No 189
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=31.67 E-value=4.1e+02 Score=30.54 Aligned_cols=112 Identities=23% Similarity=0.271 Sum_probs=0.0
Q ss_pred cccCCCCccccc------ccchhhhhhhhhhhHHHHHHH---HhHHhHHHHHHhhhcHHH---HHHHHHH-HHHHHHHHH
Q 003366 706 EVNYPEHFLSDC------SLGANLGQLKQENHELKKRLE---KKEGELQEERERCRSLEA---QLKVMQQ-TIEELNKEQ 772 (826)
Q Consensus 706 ~~~~~~~~~~~~------~~~~~~~~~~~e~~~~~~~~~---~~~~~~~~e~~~~~~l~~---~~~~~~~-~~~~~~keq 772 (826)
||-|-+.+++|| -+-.-|++|++|+.+=.-|+. ++.+.+-.++++.+.+-. ..++.++ |++-+.|.-
T Consensus 76 NV~G~~~~~pDPLsPgE~~~~~Kl~eLE~e~k~d~~~~khn~~I~~k~g~~l~~v~~~~~~~~~~e~~e~~q~~~LekAl 155 (526)
T 3iyk_A 76 NVLGSGEEIPDPLSPGERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAV 155 (526)
T ss_pred HhcccCCCCCCCCCHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhc
Q 003366 773 ESLIDIFAEERDRREREEENLRKKIK----DASDTIQDLLDKIKLLEKM 817 (826)
Q Consensus 773 ~~li~~f~eer~rr~~e~~~lr~kl~----~a~~~i~~~~~~~~~~~~~ 817 (826)
+++..|.-+|+.+-++=..-|++--. |-..-|.+.-+++.+|.+.
T Consensus 156 ~s~~~i~~~e~~~l~~L~~AL~kE~~~Rt~dE~~mi~~yr~k~~aL~~a 204 (526)
T 3iyk_A 156 TSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNA 204 (526)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHH
No 190
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=31.51 E-value=3e+02 Score=25.54 Aligned_cols=58 Identities=21% Similarity=0.262 Sum_probs=38.6
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 752 RSLEAQLKVMQQTIEELNKEQESLID-IFAEERDRREREEENLRKKIKDASDTIQDLLD 809 (826)
Q Consensus 752 ~~l~~~~~~~~~~~~~~~keq~~li~-~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~ 809 (826)
+..|.||-.|+|||+++++.=|-==| +=---=.+|..+...|+.||.+--.-|.|+..
T Consensus 45 ~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 45 TAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999998875321000 00001146888999999999987777766554
No 191
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=31.18 E-value=2.1e+02 Score=25.07 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=33.8
Q ss_pred hhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 003366 727 KQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKE 771 (826)
Q Consensus 727 ~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~ke 771 (826)
.+|...+.+-+.++.+.+.++-..++.|+.+...+.+....+.-.
T Consensus 13 eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 13 EEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888888888888888888888888877777666555433
No 192
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=31.02 E-value=3.8e+02 Score=26.12 Aligned_cols=37 Identities=14% Similarity=0.320 Sum_probs=20.0
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003366 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDR 785 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~r 785 (826)
++.|..+.|.+.|++++..+.|+-+-|-|-+..++..
T Consensus 84 ~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek 120 (155)
T 2efr_A 84 DKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLK 120 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555566666666666555555444333
No 193
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=30.78 E-value=5e+02 Score=28.03 Aligned_cols=89 Identities=12% Similarity=0.165 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHhHHhHHHHH---HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 003366 727 KQENHELKKRLEKKEGELQEER---ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDT 803 (826)
Q Consensus 727 ~~e~~~~~~~~~~~~~~~~~e~---~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~ 803 (826)
++-..++.+++++.=+++..|. +....|..+|.++|+.+-.+.+.--+---..----+--|.|...-.+|++|--..
T Consensus 372 eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (471)
T 3mq9_A 372 DEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGE 451 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhh
Q 003366 804 IQDLLDKIKLLE 815 (826)
Q Consensus 804 i~~~~~~~~~~~ 815 (826)
|..|-.+|..++
T Consensus 452 ~~~~~~~~~~~~ 463 (471)
T 3mq9_A 452 ITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
No 194
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=30.45 E-value=1.7e+02 Score=25.95 Aligned_cols=12 Identities=8% Similarity=0.227 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHH
Q 003366 788 REEENLRKKIKD 799 (826)
Q Consensus 788 ~e~~~lr~kl~~ 799 (826)
.|-++|++++++
T Consensus 59 ~e~~~l~~~~ee 70 (81)
T 1wt6_A 59 AHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 345666666665
No 195
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=30.33 E-value=11 Score=42.07 Aligned_cols=64 Identities=22% Similarity=0.359 Sum_probs=0.0
Q ss_pred hHHHHHHHHhHHhHHHHH-HhhhcHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 003366 731 HELKKRLEKKEGELQEER-ERCRSLEAQLKVMQ----QTIEELNKEQESLIDIFAEERDRREREEENLR 794 (826)
Q Consensus 731 ~~~~~~~~~~~~~~~~e~-~~~~~l~~~~~~~~----~~~~~~~keq~~li~~f~eer~rr~~e~~~lr 794 (826)
.+...+|+++|++++++. .|-+.-|.+|.+.+ ++.++|++..+.-+.-+-|+|.+-+.|..+++
T Consensus 329 ~~~~~~~~~~e~~~~~~f~~~v~~~e~~l~~~e~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~ 397 (427)
T 2qag_B 329 NEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFK 397 (427)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777776665 33333333333333 34455555444444444444444444444333
No 196
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=29.96 E-value=68 Score=29.45 Aligned_cols=52 Identities=15% Similarity=0.202 Sum_probs=38.1
Q ss_pred cccccccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHH
Q 003366 713 FLSDCSLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQT 764 (826)
Q Consensus 713 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~ 764 (826)
...+.++...++-|+.....|++++.++++.+..=++....+.+++++++++
T Consensus 80 ~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~ 131 (133)
T 1fxk_C 80 VAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444555666888888888888888888888877777777777777777654
No 197
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=29.78 E-value=1.5e+02 Score=25.97 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 003366 789 EEENLRKKIKDASDTIQDLLDKIK 812 (826)
Q Consensus 789 e~~~lr~kl~~a~~~i~~~~~~~~ 812 (826)
|-..||+=+.+|.=+--||=-||.
T Consensus 50 d~~~LrkdvD~a~l~r~dLE~kve 73 (86)
T 3swk_A 50 TLQSFRQDVDNASLARLDLERKVE 73 (86)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344566666666555444444443
No 198
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=29.72 E-value=4.2e+02 Score=26.22 Aligned_cols=92 Identities=20% Similarity=0.169 Sum_probs=45.7
Q ss_pred hhhhhhhhhHHHHHHHHhHHhH------HHHHH-----------hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003366 723 LGQLKQENHELKKRLEKKEGEL------QEERE-----------RCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDR 785 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~------~~e~~-----------~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~r 785 (826)
|++|.....+.+.++.|++.-+ +..++ |....++++++|+++.|.+|.+-..=+..|-+.|..
T Consensus 136 l~~~~~~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~kd~~kl~kae~el~~ak~~ye~ln~~L~~eLp~l~~~~~~ 215 (251)
T 2fic_A 136 MDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEMNVDLQEELPSLWNSRVG 215 (251)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566677777777766542 11121 222366677777777777766554444444443321
Q ss_pred h-HHHHH----HHHHHHHHHHHHHHHHHHHHhhh
Q 003366 786 R-EREEE----NLRKKIKDASDTIQDLLDKIKLL 814 (826)
Q Consensus 786 r-~~e~~----~lr~kl~~a~~~i~~~~~~~~~~ 814 (826)
- +.--+ -...=.++++...++|.+.|..+
T Consensus 216 ~~~~~l~~f~~~Q~~f~~~~~~~~~~L~~~l~~~ 249 (251)
T 2fic_A 216 FYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVGL 249 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1 11111 11122235555566666666543
No 199
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=29.62 E-value=2.8e+02 Score=24.09 Aligned_cols=39 Identities=13% Similarity=0.268 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003366 774 SLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIK 812 (826)
Q Consensus 774 ~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~ 812 (826)
..+..+.+..+--+.+-+.|.++++.--..+.+|-.+|.
T Consensus 65 e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 65 ELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555555555555555555555554
No 200
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=29.45 E-value=2.5e+02 Score=26.85 Aligned_cols=30 Identities=10% Similarity=0.118 Sum_probs=22.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003366 782 ERDRREREEENLRKKIKDASDTIQDLLDKIK 812 (826)
Q Consensus 782 er~rr~~e~~~lr~kl~~a~~~i~~~~~~~~ 812 (826)
.|-|+.| ...|++||+++...-|.+-...+
T Consensus 121 ~Rir~~q-~~~L~~kf~~~m~~yq~~q~~y~ 150 (180)
T 1s94_A 121 LRIRKTQ-YSTISRKFVEVMSDYNTTQIDYR 150 (180)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666655 67999999999998888744433
No 201
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=28.86 E-value=34 Score=32.67 Aligned_cols=35 Identities=23% Similarity=0.350 Sum_probs=28.1
Q ss_pred HHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 003366 741 EGELQEERERCRSLEAQLKVMQQTIEELNKEQESL 775 (826)
Q Consensus 741 ~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~l 775 (826)
|+.|..=+.+...|..||+++-+|+++++.+|+++
T Consensus 97 ed~L~~~laqLe~ls~qL~~ls~~v~~L~~q~~~~ 131 (140)
T 3iyn_Q 97 DDKLTALLAQLDSLTRELNVVSQQLLDLRQQVSAL 131 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTT
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33366666788889999999999999999888765
No 202
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=28.78 E-value=1.6e+02 Score=30.59 Aligned_cols=13 Identities=15% Similarity=0.038 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 003366 757 QLKVMQQTIEELN 769 (826)
Q Consensus 757 ~~~~~~~~~~~~~ 769 (826)
+|+.++.+++.+.
T Consensus 85 ~l~~a~~~~~~a~ 97 (369)
T 4dk0_A 85 QLVARKTAYDVAL 97 (369)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 203
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=28.74 E-value=1.1e+02 Score=26.95 Aligned_cols=45 Identities=24% Similarity=0.313 Sum_probs=35.2
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 003366 722 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELN 769 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~ 769 (826)
.+.||+-.--+....+..+|+.|..|.+|++.+...| .+++.+++
T Consensus 31 ~~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~eeL---DqTL~ELn 75 (77)
T 3mtu_E 31 ALQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQML---DQTLLELN 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHhh
Confidence 4788888888888889999999988888888887764 35555544
No 204
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=28.71 E-value=83 Score=28.07 Aligned_cols=36 Identities=25% Similarity=0.518 Sum_probs=20.4
Q ss_pred hhhhHHHHHHHHhHHhH---HHHHHhhhcHHHHHHHHHH
Q 003366 728 QENHELKKRLEKKEGEL---QEERERCRSLEAQLKVMQQ 763 (826)
Q Consensus 728 ~e~~~~~~~~~~~~~~~---~~e~~~~~~l~~~~~~~~~ 763 (826)
+||..|.+++..+++++ ..|.+..+.|..+++-+-.
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~la~ 76 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAE 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777776666663 4444555555555444433
No 205
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=28.64 E-value=1.8e+02 Score=29.44 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 003366 796 KIKDASDTIQDLLDKIKLL 814 (826)
Q Consensus 796 kl~~a~~~i~~~~~~~~~~ 814 (826)
|-.+...-|-||++-|--+
T Consensus 66 ~~~e~i~i~~DL~e~LTGl 84 (190)
T 4emc_A 66 QQAENSEVIKDLYEYLCNV 84 (190)
T ss_dssp HHHHHHHHHHHHHHHHHSE
T ss_pred HHHHhhhHHHHHHHHccCc
Confidence 3344555667777766433
No 206
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=28.47 E-value=3.7e+02 Score=30.07 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 003366 788 REEENLRKKIKDASDTIQDLLDKIKLLEKM 817 (826)
Q Consensus 788 ~e~~~lr~kl~~a~~~i~~~~~~~~~~~~~ 817 (826)
..-..|+..|....+.|++|.++|..++.+
T Consensus 105 ~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~ 134 (411)
T 3ghg_C 105 SSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 134 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666777788889999888888765
No 207
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=28.47 E-value=2.3e+02 Score=26.45 Aligned_cols=75 Identities=20% Similarity=0.337 Sum_probs=46.2
Q ss_pred hhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 003366 728 QENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDL 807 (826)
Q Consensus 728 ~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~ 807 (826)
+|..+||+-|.--| .-++|-+-+.+||+-.++++ |.++++=| .|--.+.+.+-+.|..|+|+-..+|+.|
T Consensus 24 ~ELeSlK~EL~HfE----~rl~K~rH~~~el~l~~~k~----~~~~~~g~--~e~~s~~~ek~~~le~k~Kk~~~kV~Kl 93 (109)
T 2fcw_A 24 KELEAFREELKHFE----AKIEKHNHYQKQLEIAHEKL----RHAESVGD--GERVSRSREKHALLEGRTKELGYTVKKH 93 (109)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH----HHHHHHTC--TTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH----hhhhcccc--hhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 45555665555443 33467778888887665543 22233322 3333444555778889999989998887
Q ss_pred HHHHh
Q 003366 808 LDKIK 812 (826)
Q Consensus 808 ~~~~~ 812 (826)
...|.
T Consensus 94 ~~dl~ 98 (109)
T 2fcw_A 94 LQDLS 98 (109)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77664
No 208
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=28.28 E-value=95 Score=27.58 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=8.5
Q ss_pred hhcHHHHHHHHHHHHHHH
Q 003366 751 CRSLEAQLKVMQQTIEEL 768 (826)
Q Consensus 751 ~~~l~~~~~~~~~~~~~~ 768 (826)
+..++.+|++++++.+++
T Consensus 40 ni~~eskL~eae~rn~eL 57 (81)
T 1wt6_A 40 NQNFASQLREAEARNRDL 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555555444444
No 209
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=28.24 E-value=57 Score=30.60 Aligned_cols=29 Identities=24% Similarity=0.560 Sum_probs=17.3
Q ss_pred HhHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 003366 742 GELQEERERCRSLEAQLKVMQQTIEELNK 770 (826)
Q Consensus 742 ~~~~~e~~~~~~l~~~~~~~~~~~~~~~k 770 (826)
+.|++++++-+.|..+++.+|.+|+.+.+
T Consensus 9 ~~l~~~~~~~~~l~~~~~~l~~~l~~~~~ 37 (182)
T 3kqg_A 9 PELKSDLEKASALNTKIRALQGSLENMSK 37 (182)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777777777777776665544
No 210
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=27.71 E-value=97 Score=33.47 Aligned_cols=46 Identities=17% Similarity=0.210 Sum_probs=25.3
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEEL 768 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~ 768 (826)
.+.|.+|...|...|...++.++.=....++++.++++++++|.++
T Consensus 7 ~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 7 VQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666665555443344445556666666655444
No 211
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=27.68 E-value=2.3e+02 Score=23.96 Aligned_cols=45 Identities=22% Similarity=0.397 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 003366 754 LEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIK 798 (826)
Q Consensus 754 l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~ 798 (826)
|..-+=.+.-+..++.+|...+--.++||...|..=|+.+|+=++
T Consensus 5 LVDtVYalkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k 49 (61)
T 3l4f_A 5 LVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLK 49 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333344444555555555555555555555444555555444
No 212
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=27.61 E-value=4.2e+02 Score=25.44 Aligned_cols=68 Identities=22% Similarity=0.341 Sum_probs=41.0
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 003366 749 ERCRSLEAQLKVMQQTIEELNKEQESL---IDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEK 816 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~~keq~~l---i~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~~ 816 (826)
+|+..|+.||.+|+...++++.-=+-. +.+...+=.|-..--+....|+++--..|..+...|+.++-
T Consensus 52 Er~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~ 122 (147)
T 2b9c_A 52 EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLED 122 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 788889999988888888776643332 23333333333333444555555555666666666665553
No 213
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=27.60 E-value=2.4e+02 Score=28.97 Aligned_cols=25 Identities=12% Similarity=0.053 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 754 LEAQLKVMQQTIEELNKEQESLIDI 778 (826)
Q Consensus 754 l~~~~~~~~~~~~~~~keq~~li~~ 778 (826)
++.+++.++.+++.+.++-+.+-..
T Consensus 81 ~~a~l~~a~~~~~~a~~~~~r~~~L 105 (341)
T 3fpp_A 81 LRAQRQQAEAELKLARVTYSRQQRL 105 (341)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555444444443333
No 214
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=27.58 E-value=97 Score=33.65 Aligned_cols=49 Identities=18% Similarity=0.317 Sum_probs=27.0
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q 003366 722 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKE 771 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~ke 771 (826)
-++.|+++...|.+.+.+.+..+. |....+....|+.++++||+...|.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~~~~~~~~~~~~~~~~~~ 296 (426)
T 1lrz_A 248 YIKELNEERDILNKDLNKALKDIE-KRPENKKAHNKRDNLQQQLDANEQK 296 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-hCcccHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666666665553 2223344455555555555555443
No 215
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=27.48 E-value=2.8e+02 Score=24.04 Aligned_cols=59 Identities=24% Similarity=0.445 Sum_probs=0.0
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLK----VMQQTIEELNKEQESLIDIFAEERDRRE 787 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~----~~~~~~~~~~keq~~li~~f~eer~rr~ 787 (826)
|..|..|+.+|-++|++.++++.... +++.+ ..+.+|..=.===---|+=++|==+|+|
T Consensus 8 i~~l~~E~eel~~klk~~~ee~~~~~------eee~~~~~~~lek~L~~E~~LK~QAVNKLAEIMNRKd 70 (71)
T 1s1c_X 8 IEILRRENEELTEKMKKAEEEYKLEK------EEEISNLKAAFEKNINTERTLKTQAVNKLAEIMNRKD 70 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
No 216
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=27.20 E-value=3.3e+02 Score=26.48 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Q 003366 773 ESLIDIFAEERDRREREEENLRKKIK 798 (826)
Q Consensus 773 ~~li~~f~eer~rr~~e~~~lr~kl~ 798 (826)
+++-.-|..||.+|..-...|.-+|+
T Consensus 76 ~~iq~q~~~ek~~r~e~k~~l~~ql~ 101 (150)
T 4dci_A 76 ANIQQQVAGKRSELEEQKRNLLQQQA 101 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888777655554444443
No 217
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=27.17 E-value=1.4e+02 Score=32.45 Aligned_cols=55 Identities=13% Similarity=0.221 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003366 754 LEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKL 813 (826)
Q Consensus 754 l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~ 813 (826)
+.+.++++++++++++++.+.|-...++.-+ -+..++|+++..+.|+.+-.++..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~k~~~~~~~~~~~~~~~~~~~~~ 299 (426)
T 1lrz_A 245 FDEYIKELNEERDILNKDLNKALKDIEKRPE-----NKKAHNKRDNLQQQLDANEQKIEE 299 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-----cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777666543322 134556666666666655444443
No 218
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=26.93 E-value=2e+02 Score=29.38 Aligned_cols=87 Identities=15% Similarity=0.283 Sum_probs=43.0
Q ss_pred chhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHH
Q 003366 720 GANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESLIDIFAEERDRR----EREEENLR 794 (826)
Q Consensus 720 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~-~~~~~~keq~~li~~f~eer~rr----~~e~~~lr 794 (826)
..-|.+|+++..+|+.++++..+++.- -+|..+.+.+++.+ -++.+-++--.++|-| ||... +....+|.
T Consensus 65 ~~~l~~l~~e~~el~d~~lR~~AEfeN---~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnl--erAl~~~~~~~~~~~l~ 139 (213)
T 4ani_A 65 KAQIAELEAKLSEMEHRYLRLYADFEN---FRRRTRQEMEAAEKYRAQSLASDLLPVLDNF--ERALKIETDNEQAKSIL 139 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HHHHSCCSCCSTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHhccccccHHHHH
Confidence 334555666666666666655554422 12233333444443 4455555555566666 34432 22334555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003366 795 KKIKDASDTIQDLLDKI 811 (826)
Q Consensus 795 ~kl~~a~~~i~~~~~~~ 811 (826)
+=++--.+.+.++|++.
T Consensus 140 eGvemi~k~l~~~L~k~ 156 (213)
T 4ani_A 140 QGMEMVYRSLVDALKKE 156 (213)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHC
Confidence 55555555555555543
No 219
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=26.85 E-value=45 Score=27.13 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=16.3
Q ss_pred hhhhhhhhhhHHHHHHHHhHH
Q 003366 722 NLGQLKQENHELKKRLEKKEG 742 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~~ 742 (826)
-+..|+.||.+||.|+..+.+
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~ 40 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVE 40 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999987765443
No 220
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=26.71 E-value=1.4e+02 Score=27.81 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=16.5
Q ss_pred hHHHHHH--HHHHHHHHHHHHHHHHHHHhh
Q 003366 786 REREEEN--LRKKIKDASDTIQDLLDKIKL 813 (826)
Q Consensus 786 r~~e~~~--lr~kl~~a~~~i~~~~~~~~~ 813 (826)
|+.|..| |-..-..++.++.|+=.++|.
T Consensus 59 ReLEq~NDDLER~~R~t~~SLeD~E~k~n~ 88 (111)
T 2v66_B 59 RELEQANDDLERAKRATIVSLEDFEQRLNQ 88 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhchHHHHHHHHHHhhHHHHHHHHHH
Confidence 4444433 444555567777777777664
No 221
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=26.37 E-value=2.4e+02 Score=26.28 Aligned_cols=17 Identities=18% Similarity=0.442 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003366 792 NLRKKIKDASDTIQDLL 808 (826)
Q Consensus 792 ~lr~kl~~a~~~i~~~~ 808 (826)
.||+....+-+.+|+=|
T Consensus 63 ~Lqq~fsq~q~~vq~qL 79 (112)
T 1x79_B 63 ELQQGLSQAKRDVQEQM 79 (112)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444333333333333
No 222
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=26.31 E-value=24 Score=28.83 Aligned_cols=23 Identities=9% Similarity=0.251 Sum_probs=14.6
Q ss_pred hhhhhhhhhhhHHHHHHHHhHHh
Q 003366 721 ANLGQLKQENHELKKRLEKKEGE 743 (826)
Q Consensus 721 ~~~~~~~~e~~~~~~~~~~~~~~ 743 (826)
..+..|.+||.+|++++..+++.
T Consensus 34 ~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 34 KDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34677788888888888777664
No 223
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=26.06 E-value=3.7e+02 Score=24.37 Aligned_cols=37 Identities=16% Similarity=0.121 Sum_probs=15.9
Q ss_pred cchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHH
Q 003366 719 LGANLGQLKQENHELKKRLEKKEGELQEERERCRSLE 755 (826)
Q Consensus 719 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~ 755 (826)
|.+++..=+++-...+..|......++....+...|+
T Consensus 10 L~~ll~l~~~~ed~a~~~l~~a~~~~~~~~~~L~~L~ 46 (150)
T 3ajw_A 10 LETLKDLAEKEVDDAARLLGEMRRGCQQAEEQLKMLI 46 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555544444444444444444444433333333333
No 224
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=25.87 E-value=1.1e+02 Score=26.78 Aligned_cols=19 Identities=16% Similarity=0.316 Sum_probs=8.0
Q ss_pred hhhcHHHHHHHHHHHHHHH
Q 003366 750 RCRSLEAQLKVMQQTIEEL 768 (826)
Q Consensus 750 ~~~~l~~~~~~~~~~~~~~ 768 (826)
+...|..++.+++++|+++
T Consensus 57 ~~~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 57 QTQKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 225
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=25.73 E-value=2.8e+02 Score=22.95 Aligned_cols=49 Identities=22% Similarity=0.412 Sum_probs=28.4
Q ss_pred HHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 732 ELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE 781 (826)
Q Consensus 732 ~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~e 781 (826)
..+.|..+++.. +.=-.+.+.|+.+-.++..+++.+.+|-..|-+++.|
T Consensus 14 A~R~R~KKk~~~-~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 14 ATRYRQKKRAEQ-EALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445564444332 1111455666667777777777777777777666654
No 226
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=25.73 E-value=2.5e+02 Score=25.00 Aligned_cols=33 Identities=24% Similarity=0.476 Sum_probs=21.8
Q ss_pred HhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 749 ERCRSLEAQLKVMQQTIEELNKEQESLIDIFAE 781 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~e 781 (826)
.+...|+.+-+.++.+|++|.+|...|-++|..
T Consensus 43 ~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666677777777777777777664
No 227
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=25.62 E-value=1.9e+02 Score=29.01 Aligned_cols=68 Identities=28% Similarity=0.381 Sum_probs=39.3
Q ss_pred HhhhcHHHHH-----HH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hcCCCC
Q 003366 749 ERCRSLEAQL-----KV-MQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLE-KMKTPS 821 (826)
Q Consensus 749 ~~~~~l~~~~-----~~-~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~-~~~~~~ 821 (826)
+|.+-|+++. .. -+.+|.+.-+|--.-|+.+-||| -|.|...-+.+ -.|.+|-.+|+-+. +.+-|.
T Consensus 41 EKkkiLaER~kPLnid~Lse~~L~e~ckELh~~I~~LEeEK--YDlE~kvkkqd-----yEI~dL~~rV~DLrGKFkKP~ 113 (180)
T 1j1e_C 41 EKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEER--YDIEAKVTKNI-----TEIADLTQKIFDLRGKFKRPT 113 (180)
T ss_dssp HHHHHHHHHSCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-----HHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHhcc-----hhHHHHHHHHHHHHhcccccc
Confidence 4455555554 22 24567777788788888877764 56665554444 46888988998885 366666
Q ss_pred cc
Q 003366 822 IR 823 (826)
Q Consensus 822 ~~ 823 (826)
+|
T Consensus 114 Lk 115 (180)
T 1j1e_C 114 LR 115 (180)
T ss_dssp --
T ss_pred hh
Confidence 54
No 228
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=25.34 E-value=1.7e+02 Score=26.39 Aligned_cols=30 Identities=33% Similarity=0.324 Sum_probs=16.9
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 752 RSLEAQLKVMQQTIEELNKEQESLIDIFAE 781 (826)
Q Consensus 752 ~~l~~~~~~~~~~~~~~~keq~~li~~f~e 781 (826)
++++.+|.++-++|+.+..++.-+-..++|
T Consensus 58 ~s~~~~L~e~~~kid~L~~el~K~q~~L~e 87 (98)
T 2ke4_A 58 ASLEPQIAETLSNIERLKLEVQKYEAWLAE 87 (98)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666555544444443
No 229
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=25.26 E-value=3.5e+02 Score=23.78 Aligned_cols=24 Identities=17% Similarity=0.455 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 003366 789 EEENLRKKIKDASDTIQDLLDKIK 812 (826)
Q Consensus 789 e~~~lr~kl~~a~~~i~~~~~~~~ 812 (826)
|...||..+++....|.+|.++-+
T Consensus 35 Ev~~LRGqiE~~~~~l~ql~~rQr 58 (83)
T 2xdj_A 35 DIDSLRGQIQENQYQLNQVVERQK 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555443
No 230
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=25.20 E-value=1.9e+02 Score=28.25 Aligned_cols=17 Identities=0% Similarity=-0.212 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003366 760 VMQQTIEELNKEQESLI 776 (826)
Q Consensus 760 ~~~~~~~~~~keq~~li 776 (826)
.-+++|++-++..++..
T Consensus 40 ~e~~kl~~e~~i~eas~ 56 (146)
T 2xnx_M 40 LEEKKKALELAIDQASQ 56 (146)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 33456776666666654
No 231
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=24.98 E-value=5.3e+02 Score=28.36 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCC
Q 003366 798 KDASDTIQDLLDKIKLLEKMKTP 820 (826)
Q Consensus 798 ~~a~~~i~~~~~~~~~~~~~~~~ 820 (826)
++|...|++|.+++..+|....|
T Consensus 97 ~~a~~e~~~l~~~l~~le~~~ll 119 (365)
T 1gqe_A 97 NEAVAELDALEEKLAQLEFRRMF 119 (365)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Confidence 35666666666666666654444
No 232
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=24.84 E-value=1.2e+02 Score=29.55 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=9.7
Q ss_pred hhhhhhhhhHHHHHHHHhHHhH
Q 003366 723 LGQLKQENHELKKRLEKKEGEL 744 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~ 744 (826)
..+|.++-..|+++|.+.-+++
T Consensus 90 ~~~l~~~~e~Lr~~L~~d~Eel 111 (165)
T 1gs9_A 90 RARLSKELQAAQARLGADMEDV 111 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 233
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=24.79 E-value=90 Score=33.26 Aligned_cols=54 Identities=24% Similarity=0.239 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHhHHhHHHHH----HhhhcHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH
Q 003366 728 QENHELKKRLEKKEGELQEER----ERCRSLEAQLKVMQQTIEELNKE--------QESLIDIFAEER 783 (826)
Q Consensus 728 ~e~~~~~~~~~~~~~~~~~e~----~~~~~l~~~~~~~~~~~~~~~ke--------q~~li~~f~eer 783 (826)
++..++.++|.++.....+|+ +.++.|++++++++++++.+.|. |+++ .|=|+|
T Consensus 167 ~~~~e~~~~~~~~~n~~~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n~~rl~~Lqk~~--~~~~~~ 232 (315)
T 2ve7_A 167 EMNAELQSKLKDLFNVDAFKLESLEAKNRALNEQIARLEQERSTANKANAERLKRLQKSA--DLYKDR 232 (315)
T ss_dssp HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH--HHHHHH
No 234
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=23.90 E-value=74 Score=29.85 Aligned_cols=26 Identities=12% Similarity=0.372 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 756 AQLKVMQQTIEELNKEQESLIDIFAE 781 (826)
Q Consensus 756 ~~~~~~~~~~~~~~keq~~li~~f~e 781 (826)
.++.+++++|+.++|.-.-|.++|++
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ 29 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQT 29 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999975
No 235
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=23.75 E-value=2.8e+02 Score=22.08 Aligned_cols=21 Identities=10% Similarity=0.188 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 003366 792 NLRKKIKDASDTIQDLLDKIK 812 (826)
Q Consensus 792 ~lr~kl~~a~~~i~~~~~~~~ 812 (826)
++...|+.+...|+.+-.++.
T Consensus 37 ~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 37 EIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666655554
No 236
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=23.43 E-value=97 Score=32.29 Aligned_cols=31 Identities=10% Similarity=0.034 Sum_probs=14.6
Q ss_pred CcccccccchhhhhhhhhhhHHHHHHHHhHH
Q 003366 712 HFLSDCSLGANLGQLKQENHELKKRLEKKEG 742 (826)
Q Consensus 712 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 742 (826)
-.|+...+..-+.+++.+..+++..|...+.
T Consensus 61 ~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~ 91 (369)
T 4dk0_A 61 AEIDSTTQINTLNTRKAALASYQAQLVARKT 91 (369)
T ss_dssp EECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554444444544444444444444333
No 237
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=23.33 E-value=45 Score=34.48 Aligned_cols=21 Identities=38% Similarity=0.401 Sum_probs=11.7
Q ss_pred hhhhhhhhhHHHHHHHHhHHh
Q 003366 723 LGQLKQENHELKKRLEKKEGE 743 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~ 743 (826)
+..|++||.+||+++..++..
T Consensus 21 ~~~l~~eN~~Lk~e~~~l~~~ 41 (255)
T 2j5u_A 21 LKNTYTENQHLKERLEELAQL 41 (255)
T ss_dssp -----CTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566788888888877665543
No 238
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=23.29 E-value=55 Score=44.35 Aligned_cols=70 Identities=14% Similarity=0.161 Sum_probs=35.5
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIK 798 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~ 798 (826)
|+.+.+...+-++.|...+..|..-++|.+..+++|++++++|+ +.||+-++.|+.|=.+..++|...++
T Consensus 1852 l~~~~~~~~~k~~~l~~~~~~l~~~l~kL~e~~~~v~~l~~~l~------~~Li~~L~~E~~RW~~~~~~~~~~~~ 1921 (2695)
T 4akg_A 1852 LRALVKLVTAKYQDLQENQRFVNVGLEKLNESVLKVNELNKTLS------ISLVKSLTFEKERWLNTTKQFSKTSQ 1921 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------CTTHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 44554444433344444444444444555555556666666666 88999999999999999988887765
No 239
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=22.65 E-value=8e+02 Score=27.06 Aligned_cols=12 Identities=25% Similarity=0.410 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 003366 790 EENLRKKIKDAS 801 (826)
Q Consensus 790 ~~~lr~kl~~a~ 801 (826)
.+.++.|++.|.
T Consensus 187 ~eK~~~k~~k~~ 198 (486)
T 3haj_A 187 LKKLQDKIEKCK 198 (486)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 240
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=22.62 E-value=5.4e+02 Score=25.66 Aligned_cols=19 Identities=11% Similarity=0.139 Sum_probs=11.1
Q ss_pred HhhhcHHHHHHHHHHHHHH
Q 003366 749 ERCRSLEAQLKVMQQTIEE 767 (826)
Q Consensus 749 ~~~~~l~~~~~~~~~~~~~ 767 (826)
+..-.||.-+.+++++|++
T Consensus 143 e~kn~le~~i~~~~~~l~~ 161 (227)
T 1u00_A 143 EQKVEAARVLESLHGALAA 161 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4444566666666666654
No 241
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=22.57 E-value=1.8e+02 Score=26.95 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003366 754 LEAQLKVMQQTIEELNKE 771 (826)
Q Consensus 754 l~~~~~~~~~~~~~~~ke 771 (826)
|..++.++..+++.+.||
T Consensus 23 L~~ei~eLk~~ve~lEkE 40 (106)
T 4e61_A 23 LNEEIEQYKGTVSTLEIE 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444333
No 242
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=22.44 E-value=4.8e+02 Score=24.40 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=23.8
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 745 QEERERCRSLEAQLKVMQQTIEELNKEQESLID 777 (826)
Q Consensus 745 ~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~ 777 (826)
+..+.|++.++.+|+.-+..++.+++.=+.||.
T Consensus 91 ~~ll~kH~afe~El~a~~~~~~~l~~~g~~Li~ 123 (161)
T 3lbx_A 91 QGKYQKHQSLEAEVQTKSRLMSELEKTREERFT 123 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444467777777777777777777777777775
No 243
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=22.34 E-value=5.5e+02 Score=25.01 Aligned_cols=38 Identities=24% Similarity=0.264 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003366 775 LIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIK 812 (826)
Q Consensus 775 li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~ 812 (826)
-+..+..+-++-+-+-..-+.|.+..+..+...+..|+
T Consensus 99 sv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~ 136 (155)
T 2efr_A 99 SVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVE 136 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455544444445555555555544444443
No 244
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=22.32 E-value=5.8e+02 Score=28.37 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003366 789 EEENLRKKIKDASDTIQDLLDKI 811 (826)
Q Consensus 789 e~~~lr~kl~~a~~~i~~~~~~~ 811 (826)
....||.-|++-...||-|=..|
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444
No 245
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=22.22 E-value=4.5e+02 Score=23.97 Aligned_cols=64 Identities=16% Similarity=0.236 Sum_probs=45.1
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003366 751 CRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLL 814 (826)
Q Consensus 751 ~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~ 814 (826)
.+.|+.++++++++.+.=-++|-..|+-+--|-..++.|...|+.-|.-....=-.|..++..+
T Consensus 31 k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l 94 (107)
T 2no2_A 31 KKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAEL 94 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777788777777777788888888888888899998888876665544433344444443
No 246
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=22.00 E-value=4.1e+02 Score=23.41 Aligned_cols=58 Identities=17% Similarity=0.226 Sum_probs=38.3
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 752 RSLEAQLKVMQQTIEELNKEQESLID-IFAEERDRREREEENLRKKIKDASDTIQDLLD 809 (826)
Q Consensus 752 ~~l~~~~~~~~~~~~~~~keq~~li~-~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~ 809 (826)
+..|.||-.|+|||+++++.=|-==| +=---=.+|..+...|+.||.+--.-|.|+..
T Consensus 15 ~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 15 TLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45688999999999988764321000 00001136788999999999987777766654
No 247
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=21.94 E-value=5.9e+02 Score=28.29 Aligned_cols=14 Identities=36% Similarity=0.510 Sum_probs=6.6
Q ss_pred HHHHHHHHHHhhhh
Q 003366 802 DTIQDLLDKIKLLE 815 (826)
Q Consensus 802 ~~i~~~~~~~~~~~ 815 (826)
.-|.+++-+|..||
T Consensus 141 ~~l~~q~~kiqRLE 154 (390)
T 1deq_A 141 KNVRDQLVDMKRLE 154 (390)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444555444
No 248
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=21.88 E-value=4.6e+02 Score=23.93 Aligned_cols=58 Identities=17% Similarity=0.226 Sum_probs=39.4
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 752 RSLEAQLKVMQQTIEELNKEQESLID-IFAEERDRREREEENLRKKIKDASDTIQDLLD 809 (826)
Q Consensus 752 ~~l~~~~~~~~~~~~~~~keq~~li~-~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~ 809 (826)
+..|.||-.|+|||+++++.=|-==| +=---=.+|..+...|+.||.+--.-|.|+..
T Consensus 15 ~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 15 TLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45688999999999988764321000 00001146888999999999988877777665
No 249
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=21.67 E-value=19 Score=39.66 Aligned_cols=12 Identities=25% Similarity=0.407 Sum_probs=0.0
Q ss_pred HHHHHHhHHhHH
Q 003366 734 KKRLEKKEGELQ 745 (826)
Q Consensus 734 ~~~~~~~~~~~~ 745 (826)
..+|+++|++|+
T Consensus 328 ~~~~~~~e~~~~ 339 (418)
T 2qag_C 328 VAKMKKMEMEME 339 (418)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 344445544443
No 250
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=21.24 E-value=49 Score=39.53 Aligned_cols=67 Identities=25% Similarity=0.388 Sum_probs=30.9
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHH-----HhhhcHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhhHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEER-----ERCRSLEAQLKVMQQTIEELNKEQESL--------IDIFAEERDRRERE 789 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~-----~~~~~l~~~~~~~~~~~~~~~keq~~l--------i~~f~eer~rr~~e 789 (826)
+.+++++..++|+++...++.-..+. ++-+..++++|.++.+|+.+..||+.| |.+++|.-.+.|..
T Consensus 633 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~e~~l~~~~~~~k~l~~~~~~~fv~~l~~~~~~~~~~ 712 (771)
T 1h2v_C 633 VLKIQKELEEAKEKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVESAQSEQKNLFLVIFQRFIMILTEHLVRCETD 712 (771)
T ss_dssp HHHHHHHHHHC-----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhcc
Confidence 45666666666666666442221111 344566788999999999999999876 44556655555544
No 251
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=21.12 E-value=6.1e+02 Score=29.24 Aligned_cols=29 Identities=14% Similarity=0.215 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 003366 759 KVMQQTIEELNKEQESLIDIFAEERDRRE 787 (826)
Q Consensus 759 ~~~~~~~~~~~keq~~li~~f~eer~rr~ 787 (826)
+.|++++|.+.+|-+.--..|++-++|.+
T Consensus 317 ~~Aer~~e~a~ael~~a~k~~a~~~er~~ 345 (551)
T 2b5u_A 317 EAAERNYERARAELNQANEDVARNQERQA 345 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444555555544
No 252
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=20.95 E-value=5.9e+02 Score=29.36 Aligned_cols=78 Identities=14% Similarity=0.268 Sum_probs=37.2
Q ss_pred hhhhhhhhhHHHHHHHHhH-HhHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKE-GELQEERERCRSLEAQLKVMQQTIEELNKEQESLIDIFAEERDRREREEENLRKKIKDAS 801 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~-~~~~~e~~~~~~l~~~~~~~~~~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~ 801 (826)
-.+.++||.--.|=+.+.+ +..++|+++.|. +|.+|.+-+++.+..|....-++.+-|..-| ..-++|.+|.
T Consensus 297 kqrqeee~r~~qew~~~hp~~~Aer~~e~a~a---el~~a~k~~a~~~er~~~t~~~~~~~~~~~~----~~n~~~~~~~ 369 (551)
T 2b5u_A 297 KQRQDEENRRQQEWDATHPVEAAERNYERARA---ELNQANEDVARNQERQAKAVQVYNSRKSELD----AANKTLADAI 369 (551)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----hhhhHHHHHH
Confidence 3344444444333333332 335666555443 3344444444444455555555555444432 2456666666
Q ss_pred HHHHHH
Q 003366 802 DTIQDL 807 (826)
Q Consensus 802 ~~i~~~ 807 (826)
..|.+.
T Consensus 370 ~~~~~f 375 (551)
T 2b5u_A 370 AEIKQF 375 (551)
T ss_dssp HHHHHH
T ss_pred Hhhhhh
Confidence 665543
No 253
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=20.92 E-value=98 Score=25.14 Aligned_cols=27 Identities=15% Similarity=0.195 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003366 787 EREEENLRKKIKDASDTIQDLLDKIKL 813 (826)
Q Consensus 787 ~~e~~~lr~kl~~a~~~i~~~~~~~~~ 813 (826)
.+|-+.||.|+++...++++|-.+|+.
T Consensus 25 k~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 25 RLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556666666666666666666653
No 254
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=20.92 E-value=2e+02 Score=27.13 Aligned_cols=43 Identities=21% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHhHHhHHHHH----HhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 003366 733 LKKRLEKKEGELQEER----ERCRSLEAQLKVMQQTIEELNKEQESL 775 (826)
Q Consensus 733 ~~~~~~~~~~~~~~e~----~~~~~l~~~~~~~~~~~~~~~keq~~l 775 (826)
|++-|.+....-+... +..+.|..+|+++..++|.+.++-+.|
T Consensus 58 L~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 58 LMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
No 255
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=20.90 E-value=2.9e+02 Score=30.32 Aligned_cols=10 Identities=20% Similarity=0.348 Sum_probs=3.8
Q ss_pred HHHHHHHhHH
Q 003366 733 LKKRLEKKEG 742 (826)
Q Consensus 733 ~~~~~~~~~~ 742 (826)
+++|+..++.
T Consensus 8 ~~~r~~el~~ 17 (354)
T 3d5a_X 8 LEEEYRELEA 17 (354)
T ss_dssp HTHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334433333
No 256
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=20.86 E-value=2.8e+02 Score=27.40 Aligned_cols=87 Identities=15% Similarity=0.234 Sum_probs=45.2
Q ss_pred hhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 003366 722 NLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQ-TIEELNKEQESLIDIFAEERDRREREEENLRKKIKDA 800 (826)
Q Consensus 722 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~-~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a 800 (826)
-+..|+++..+|++++++..+++..= +|.++.+.+++.+ -++.+-++--.++|-|.--...-....++|.+=++--
T Consensus 27 ~~~~l~~e~~e~~d~~lR~~Ae~eN~---rkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~~~~~~~~~l~~Gv~m~ 103 (177)
T 3a6m_A 27 RLKAAEEELKGLKDKYLRLLADFDNY---RKRMEEELKAREREGVLKALRALLPVLDDLDRALEFAEASPESIRQGVRAI 103 (177)
T ss_dssp STTGGGGTSSSHHHHHHTTTTTTTTH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhccHHHHHHHHHHH
Confidence 47788889999999999988875221 1222333333333 4455555555566666322221111133444444444
Q ss_pred HHHHHHHHHHH
Q 003366 801 SDTIQDLLDKI 811 (826)
Q Consensus 801 ~~~i~~~~~~~ 811 (826)
.+.+.++|++.
T Consensus 104 ~~~l~~~L~k~ 114 (177)
T 3a6m_A 104 RDGFFRILAGL 114 (177)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
Confidence 44445555443
No 257
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=20.84 E-value=4.4e+02 Score=24.65 Aligned_cols=16 Identities=31% Similarity=0.650 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 003366 755 EAQLKVMQQTIEELNK 770 (826)
Q Consensus 755 ~~~~~~~~~~~~~~~k 770 (826)
..++.+.++-|++++.
T Consensus 39 ~~~~~e~~~~l~~l~~ 54 (151)
T 2zdi_C 39 KAEVQTVRETLENLKK 54 (151)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5555555555555443
No 258
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=20.69 E-value=1.3e+02 Score=27.62 Aligned_cols=48 Identities=17% Similarity=0.213 Sum_probs=29.1
Q ss_pred ccchhhhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 003366 718 SLGANLGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKVMQQTIEELN 769 (826)
Q Consensus 718 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~ 769 (826)
.|+.|+.+|....-.|.+-|...|+- ..-.|.....|+.|+++++.++
T Consensus 38 eLEeIV~~LE~gel~LEesl~lyeeG----~~L~k~C~~~L~~AE~kV~~L~ 85 (100)
T 1vp7_A 38 ELESLVSAMENGTLPLEQSLSAYRRG----VELARVCQDRLAQAEQQVKVLE 85 (100)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555544444332 2455666788899999998884
No 259
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=20.59 E-value=6.2e+02 Score=24.98 Aligned_cols=25 Identities=36% Similarity=0.349 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 003366 788 REEENLRKKIKDASDTIQDLLDKIK 812 (826)
Q Consensus 788 ~e~~~lr~kl~~a~~~i~~~~~~~~ 812 (826)
.+.+.++.|+..|-+.-...+++++
T Consensus 163 k~~eK~~~k~~ka~~~Y~~~v~~~n 187 (276)
T 2v0o_A 163 REIEKAAVKSKKATDTYKLYVEKYA 187 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777665554444444
No 260
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=20.57 E-value=1.6e+02 Score=23.95 Aligned_cols=38 Identities=24% Similarity=0.277 Sum_probs=20.0
Q ss_pred hhhhhhhhhHHHHHHHHhHHhHHHHHHhhhcHHHHHHH
Q 003366 723 LGQLKQENHELKKRLEKKEGELQEERERCRSLEAQLKV 760 (826)
Q Consensus 723 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~ 760 (826)
+..|+.++..|.+|=.++.+-|+.=+++...|.++|+.
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555443
No 261
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=20.50 E-value=4.6e+02 Score=27.42 Aligned_cols=52 Identities=29% Similarity=0.413 Sum_probs=30.0
Q ss_pred HHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003366 758 LKVMQQTIEEL---NKEQES-LIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIK 812 (826)
Q Consensus 758 ~~~~~~~~~~~---~keq~~-li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~ 812 (826)
+++.|++|+.+ -|.|++ +++-++|- |+.|.+.|.+.+++..+.+...-++|+
T Consensus 146 ~eei~~KLeaAeErRk~qea~~Lk~Laek---rEHe~eVlqka~e~n~~f~k~~eekl~ 201 (240)
T 4f61_I 146 KEKLAQKMESNKENRKYQEAELLKHLAEK---REHEREVIQRAIEENNNWIKMAKEKLA 201 (240)
T ss_dssp HHHHHHHHHHHHHHHTGGGTHHHHHHHHH---HHHHHHHTTHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666543 333433 44555554 466777777777776666655555553
No 262
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=20.39 E-value=5.8e+02 Score=24.54 Aligned_cols=78 Identities=21% Similarity=0.331 Sum_probs=48.5
Q ss_pred hhhhHHHHHHHHhHHhHHHH---H---HhhhcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 003366 728 QENHELKKRLEKKEGELQEE---R---ERCRSLEAQLKVMQQTIEELNKEQ--ESLIDIFAEERDRREREEENLRKKIKD 799 (826)
Q Consensus 728 ~e~~~~~~~~~~~~~~~~~e---~---~~~~~l~~~~~~~~~~~~~~~keq--~~li~~f~eer~rr~~e~~~lr~kl~~ 799 (826)
++...|..||++.|+.++.= + .-|...-.||.-++.-|.-+.++- .-|-.-+.+.-..-+ +....|++|
T Consensus 49 ~~Kk~ll~RLkRIeGQvrGI~rMIEedr~C~DIL~QlaAVrsAL~~v~~~ILe~Hl~~CV~~ai~~g~---~e~~ekI~E 125 (136)
T 4adz_A 49 KQKAEHLKRLRRIEGQIRGLQRMVDEDVYCIDILTQVSASTKALQSFALQLLEEHLRHCVADAALKGG---TEIDAKVEE 125 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---hhHHHHHHH
Confidence 45567889999999996432 2 458888889988888887776651 222222322211111 223567888
Q ss_pred HHHHHHHHH
Q 003366 800 ASDTIQDLL 808 (826)
Q Consensus 800 a~~~i~~~~ 808 (826)
+...|.-|+
T Consensus 126 l~~~I~k~~ 134 (136)
T 4adz_A 126 ATKAIGRLL 134 (136)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877777664
No 263
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=20.21 E-value=1.6e+02 Score=22.50 Aligned_cols=28 Identities=14% Similarity=0.227 Sum_probs=13.5
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003366 752 RSLEAQLKVMQQTIEELNKEQESLIDIF 779 (826)
Q Consensus 752 ~~l~~~~~~~~~~~~~~~keq~~li~~f 779 (826)
+.||..++++..+..++..|-+.|-.+.
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3455555555555555544444444333
No 264
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=20.20 E-value=7e+02 Score=25.43 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003366 787 EREEENLRKKIKDASDTIQDLLDKIK 812 (826)
Q Consensus 787 ~~e~~~lr~kl~~a~~~i~~~~~~~~ 812 (826)
.--...|.+||++++...|.+.....
T Consensus 137 k~~~~~L~~~f~~~~~~Fq~~Q~~y~ 162 (279)
T 2xhe_B 137 QSQHSSLSRKFVKVMTRYNDVQAENK 162 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467899999999999988766544
No 265
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=20.11 E-value=1.9e+02 Score=26.66 Aligned_cols=52 Identities=19% Similarity=0.158 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCc
Q 003366 764 TIEELNKEQESLIDIFAEERDRREREEENLRKKIKDASDTIQDLLDKIKLLEKMKTPSI 822 (826)
Q Consensus 764 ~~~~~~keq~~li~~f~eer~rr~~e~~~lr~kl~~a~~~i~~~~~~~~~~~~~~~~~~ 822 (826)
+|.+.-+|--.-|+.+-||| -|.|...-+. --.|.+|-.+|+.+-+.+-|..
T Consensus 46 ~L~e~~keLh~~I~~lEeEK--YDlE~kv~kq-----~yEI~eL~~rV~dlgKfkKp~~ 97 (107)
T 1ytz_T 46 KLRDKAKELWDWLYQLQTEK--YDFAEQIKRK-----KYEIVTLRNRIDQAQKHSKKAG 97 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-----HHHHHHHHHHHHHTCCCC----
T ss_pred HHHHHHHHHHHHHHHHHHHH--hhHHHHHHhh-----hhHHHHHHHHHHHhcCccCCCC
Confidence 56666777777777776654 5666554444 4469999999999977777754
Done!