BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003367
(826 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 88 KTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVD 132
K + D L + E II ILG G+GKTT AR++ E+ D
Sbjct: 277 KKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD 321
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 95/226 (42%), Gaps = 28/226 (12%)
Query: 478 LSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAK 537
+ + + P +L HL++ + + + ELP+ L+TL ++ L ALP IA
Sbjct: 91 VPLPQFPDQAFRLSHLQHXTI-DAAGLXELPDTXQQFAGLETLTLAR-NPLRALPASIAS 148
Query: 538 LINLRHLINEGTP-LLYLPKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLN--HLQ 594
L LR L P L LP+ L + +G Q L NL L+
Sbjct: 149 LNRLRELSIRACPELTELPEPLA-----------------STDASGEHQGLVNLQSLRLE 191
Query: 595 GSLVLTALGNVTDVGEAKSAKLESKKHLVCLRLEFIKLGRVELVD-KDNEVLEALQP--- 650
+ + + ++ ++ KS K+ + L L L ++E +D + L P
Sbjct: 192 WTGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFG 250
Query: 651 -SPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLPSL 695
L++L + D + + P + LT+L L+L+ C +LPSL
Sbjct: 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296
>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
Length = 406
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 60/157 (38%), Gaps = 27/157 (17%)
Query: 156 ILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPES 215
I+E + V A + L+ + + LL+ D+V +G + EL + + +G
Sbjct: 188 IVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTG-VGRTGELYAYMHYG---- 242
Query: 216 RILVTTRKEDVAKMMRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIAD 275
V + TT+ L P +L + TEEC ++ +G
Sbjct: 243 ----------VTPDLLTTAKALGGGFP---VGALLA--------TEECARVMTVGTH-GT 280
Query: 276 KCNGLPLAAKTSGSLLSLKTTMEQWKTVLDSEIWKVE 312
G PLA+ +G +L L T E V W VE
Sbjct: 281 TYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVE 317
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 481 ARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLIN 540
+P+ I + +L LNL +ND +P+ + DL L LD+S+ +PQ ++ L
Sbjct: 646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705
Query: 541 LRHL 544
L +
Sbjct: 706 LTEI 709
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 481 ARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLIN 540
+P+ + +K L L L ND E+P L + NL + +SN +P+ I +L N
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515
Query: 541 LRHL 544
L L
Sbjct: 516 LAIL 519
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 481 ARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLIN 540
+P+ I + +L LNL +ND +P+ + DL L LD+S+ +PQ ++ L
Sbjct: 643 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 702
Query: 541 LRHL 544
L +
Sbjct: 703 LTEI 706
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 481 ARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLIN 540
+P+ + +K L L L ND E+P L + NL + +SN +P+ I +L N
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 512
Query: 541 L 541
L
Sbjct: 513 L 513
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 479 SIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKL 538
S+ LP IK L +LR L+LS+N + LP L L+ + + LP L
Sbjct: 258 SLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYFYFFD-NMVTTLPWEFGNL 315
Query: 539 INLRHLINEGTPL 551
NL+ L EG PL
Sbjct: 316 CNLQFLGVEGNPL 328
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 478 LSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAK 537
L I + NI K L L L N +++ ELP + +L NL+ LD+S+ L +LP +
Sbjct: 234 LQIFNISANIFKYDFLTRLYL-NGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLPAELGS 291
Query: 538 LINLRHL 544
L++
Sbjct: 292 CFQLKYF 298
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 480 IARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLI 539
+ +P I KL L YL +++ + +P+ L + L TLD S LP I+ L
Sbjct: 90 VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149
Query: 540 NLRHLINEG 548
NL + +G
Sbjct: 150 NLVGITFDG 158
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 481 ARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGN 527
LP+ + +LK L LN+S N+ E+P+ NLQ DVS N
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQG----GNLQRFDVSAYAN 300
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 480 IARLPRNI-KKLKHLRYLNLSNNDAIYELPEALCD-LCNLQTLDVSNCGNLHALPQGIAK 537
+ LP + L L L+L N + LP A+ D L +L+ L + C L LP+GI +
Sbjct: 76 LGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMC-CNKLTELPRGIER 133
Query: 538 LINLRHLINEGTPLLYLPKG-LERLTCL 564
L +L HL + L +P G +RL+ L
Sbjct: 134 LTHLTHLALDQNQLKSIPHGAFDRLSSL 161
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 484 PRNIKKLKHLRYLNLSNNDAIYELPEALCD-LCNLQTLDVSNCGNLHALPQGI-AKLINL 541
P L +L+ L L +N + LP + D L L LD+ L LP + +L++L
Sbjct: 57 PGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGT-NQLTVLPSAVFDRLVHL 114
Query: 542 RHLINEGTPLLYLPKGLERLTCLRTLS 568
+ L L LP+G+ERLT L L+
Sbjct: 115 KELFMCCNKLTELPRGIERLTHLTHLA 141
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 110 ILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAA 169
+ G G+GKTT A LV E+ D I + V + A +++ D +S V
Sbjct: 82 LYGPPGIGKTTAAHLVAQELGYD------ILEQNASDVRSKTLLNAGVKNALDNMSVVGY 135
Query: 170 FDTLLRHIE--KSVKGKKFLLVLDDV 193
F +H E +++ GK F++++D+V
Sbjct: 136 F----KHNEEAQNLNGKHFVIIMDEV 157
>pdb|4G35|A Chain A, Mcl-1 In Complex With A Biphenyl Cross-Linked Noxa Peptide
Length = 165
Score = 30.0 bits (66), Expect = 5.4, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 144 SDPVDEIRVA-KAILESFRDVVSAV-----AAFDTLLRHIEKSVKG--KKFLLVLDDVWS 195
S P+ E A + LE+ R V V AF +LR ++ +G K F V+ V+
Sbjct: 34 SKPLGEAGAAGRRALETLRRVGDGVQRNHETAFQGMLRKLDIKNEGDVKSFSRVMVHVFK 93
Query: 196 GNPTKWEELVSTLKFGSPESRILVTTRKEDVAKMMRTTSMILLAK 240
T W +V+ + FG+ ++ L + +E + + T +L +
Sbjct: 94 DGVTNWGRIVTLISFGAFVAKHLKSVNQESFIEPLAETITDVLVR 138
>pdb|1WSX|A Chain A, Solution Structure Of Mcl-1
pdb|2JM6|B Chain B, Solution Structure Of Mcl-1 Complexed With Noxab
pdb|2ROC|A Chain A, Solution Structure Of Mcl-1 Complexed With Puma
pdb|2ROD|A Chain A, Solution Structure Of Mcl-1 Complexed With Noxaa
Length = 162
Score = 30.0 bits (66), Expect = 5.5, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 144 SDPVDEIRVA-KAILESFRDVVSAV-----AAFDTLLRHIEKSVKG--KKFLLVLDDVWS 195
S P+ E A + LE+ R V V AF +LR ++ +G K F V+ V+
Sbjct: 31 SKPLGEAGAAGRRALETLRRVGDGVQRNHETAFQGMLRKLDIKNEGDVKSFSRVMVHVFK 90
Query: 196 GNPTKWEELVSTLKFGSPESRILVTTRKEDVAKMMRTTSMILLAK 240
T W +V+ + FG+ ++ L + +E + + T +L +
Sbjct: 91 DGVTNWGRIVTLISFGAFVAKHLKSVNQESFIEPLAETITDVLVR 135
>pdb|1U1H|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase
pdb|1U1J|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase
pdb|1U1U|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase
pdb|1U22|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase
Length = 765
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 22/134 (16%)
Query: 36 VKIKNLSKTLDDIAREKDRFSFSLTSG---TRELKPPMTTSVID--VSKVRGRDEEKKTI 90
V++ L+K L A +KD FS + +R P +T + + ++G D + T
Sbjct: 359 VEVNALAKAL---AGQKDEALFSANAAALASRRSSPRVTNEGVQKAAAALKGSDHRRATN 415
Query: 91 IDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEI 150
+ L + Q+K++LPI+ G +T R V E K + V E
Sbjct: 416 VSARL-DAQQKKLNLPILPTTTIGSFPQTVELRRVRREYK-------------AKKVSEE 461
Query: 151 RVAKAILESFRDVV 164
KAI E + VV
Sbjct: 462 DYVKAIKEEIKKVV 475
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 98 SSQEKMSLPIISILGTGGVGKTTLAR 123
S E M LP I + GT GVGKTTL +
Sbjct: 4 GSPEFMLLPNILLTGTPGVGKTTLGK 29
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 22/115 (19%)
Query: 182 KGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKEDVAKMMRTTSMIL---- 237
K + LL+LDDVW W LK + +IL+TTR + V + ++
Sbjct: 234 KHPRSLLILDDVWDS----W-----VLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVES 284
Query: 238 -LAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTSGSLL 291
L K + SLF + + L + I +C G PL G+LL
Sbjct: 285 SLGKEKGLEILSLFVNMKKAD--------LPEQAHSIIKECKGSPLVVSLIGALL 331
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 87 KKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFD 136
KKT D +L E I+ ++G G GKTTL +L+ +K D D
Sbjct: 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD 409
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,732,922
Number of Sequences: 62578
Number of extensions: 884960
Number of successful extensions: 2390
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 2332
Number of HSP's gapped (non-prelim): 82
length of query: 826
length of database: 14,973,337
effective HSP length: 107
effective length of query: 719
effective length of database: 8,277,491
effective search space: 5951516029
effective search space used: 5951516029
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)