Query 003367
Match_columns 826
No_of_seqs 671 out of 4443
Neff 10.0
Searched_HMMs 46136
Date Thu Mar 28 22:10:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003367.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003367hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.1E-77 4.5E-82 686.9 37.0 524 29-572 105-675 (889)
2 PLN03210 Resistant to P. syrin 100.0 8.8E-65 1.9E-69 617.2 46.8 682 36-807 134-909 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 5.8E-44 1.3E-48 373.9 12.7 278 83-367 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 3E-24 6.4E-29 263.2 15.1 319 454-802 156-486 (968)
5 PLN00113 leucine-rich repeat r 99.9 7.3E-24 1.6E-28 259.7 13.9 316 460-804 138-465 (968)
6 KOG0444 Cytoskeletal regulator 99.9 5.4E-26 1.2E-30 235.9 -6.5 324 424-808 54-379 (1255)
7 KOG4194 Membrane glycoprotein 99.8 2E-22 4.2E-27 208.6 3.0 320 424-800 124-448 (873)
8 KOG4194 Membrane glycoprotein 99.8 1.3E-21 2.8E-26 202.5 4.5 280 487-803 145-428 (873)
9 PLN03210 Resistant to P. syrin 99.8 1.1E-19 2.4E-24 222.6 16.5 302 455-807 551-885 (1153)
10 KOG0444 Cytoskeletal regulator 99.8 6.2E-22 1.3E-26 206.0 -5.6 304 454-804 47-352 (1255)
11 KOG0472 Leucine-rich repeat pr 99.8 2.3E-21 4.9E-26 192.3 -8.6 315 453-803 197-540 (565)
12 KOG0472 Leucine-rich repeat pr 99.7 9.9E-20 2.1E-24 180.8 -8.9 266 461-803 44-309 (565)
13 KOG0618 Serine/threonine phosp 99.7 4.2E-18 9.2E-23 186.5 -3.8 325 458-801 41-417 (1081)
14 PRK15387 E3 ubiquitin-protein 99.6 6E-15 1.3E-19 167.6 13.9 93 462-574 222-314 (788)
15 KOG0618 Serine/threonine phosp 99.5 2.2E-16 4.7E-21 173.2 -3.7 248 490-780 240-489 (1081)
16 PRK15370 E3 ubiquitin-protein 99.5 7.3E-14 1.6E-18 160.0 8.6 227 462-778 199-426 (754)
17 KOG0617 Ras suppressor protein 99.5 9.5E-16 2.1E-20 134.9 -5.2 166 487-697 29-194 (264)
18 PRK15387 E3 ubiquitin-protein 99.4 5.7E-13 1.2E-17 151.6 13.2 257 462-803 201-457 (788)
19 PRK04841 transcriptional regul 99.4 1E-11 2.2E-16 152.0 24.2 293 77-418 13-332 (903)
20 PRK15370 E3 ubiquitin-protein 99.4 3.3E-13 7.2E-18 154.6 8.7 245 462-803 178-427 (754)
21 KOG4237 Extracellular matrix p 99.4 1.6E-14 3.6E-19 143.9 -3.5 259 424-710 66-333 (498)
22 PRK00411 cdc6 cell division co 99.4 1.6E-10 3.4E-15 126.8 26.7 301 76-393 28-359 (394)
23 KOG0617 Ras suppressor protein 99.3 4.2E-14 9E-19 124.7 -4.3 146 424-590 32-178 (264)
24 cd00116 LRR_RI Leucine-rich re 99.3 1.9E-13 4.2E-18 145.7 -2.4 118 455-573 16-148 (319)
25 TIGR03015 pepcterm_ATPase puta 99.3 2.2E-10 4.7E-15 118.6 20.4 183 105-291 43-242 (269)
26 KOG4658 Apoptotic ATPase [Sign 99.3 1.7E-12 3.8E-17 151.1 4.4 301 460-801 543-856 (889)
27 KOG4237 Extracellular matrix p 99.2 1.3E-13 2.9E-18 137.6 -6.2 105 464-574 69-176 (498)
28 TIGR02928 orc1/cdc6 family rep 99.2 1.9E-09 4.1E-14 116.9 24.9 302 76-393 13-351 (365)
29 PF01637 Arch_ATPase: Archaeal 99.2 6.9E-11 1.5E-15 119.7 11.0 193 80-286 1-233 (234)
30 PRK00080 ruvB Holliday junctio 99.2 1.8E-10 3.9E-15 122.0 14.1 262 77-391 24-309 (328)
31 cd00116 LRR_RI Leucine-rich re 99.2 2.4E-12 5.3E-17 137.2 -0.9 119 454-572 43-175 (319)
32 TIGR00635 ruvB Holliday juncti 99.2 3.7E-10 8E-15 119.0 15.2 276 78-392 4-289 (305)
33 COG2909 MalT ATP-dependent tra 99.2 2.2E-09 4.8E-14 118.8 21.3 297 77-418 18-338 (894)
34 PF05729 NACHT: NACHT domain 99.1 5E-10 1.1E-14 106.6 11.6 142 106-253 1-162 (166)
35 KOG0532 Leucine-rich repeat (L 98.9 4.1E-11 8.8E-16 125.5 -4.3 111 454-573 90-200 (722)
36 PRK06893 DNA replication initi 98.9 8.3E-09 1.8E-13 102.9 10.8 153 106-289 40-205 (229)
37 KOG3207 Beta-tubulin folding c 98.9 4.8E-10 1.1E-14 114.1 1.5 116 648-778 218-337 (505)
38 PTZ00112 origin recognition co 98.8 5.4E-08 1.2E-12 108.8 15.8 214 76-291 753-986 (1164)
39 COG3899 Predicted ATPase [Gene 98.8 9.6E-08 2.1E-12 112.4 18.2 266 79-358 1-333 (849)
40 COG2256 MGS1 ATPase related to 98.8 3.6E-08 7.9E-13 100.3 12.3 152 104-282 47-207 (436)
41 PF05496 RuvB_N: Holliday junc 98.8 6.5E-08 1.4E-12 92.1 12.8 179 77-288 23-222 (233)
42 PRK13342 recombination factor 98.8 1E-07 2.2E-12 104.2 14.5 176 78-287 12-196 (413)
43 TIGR03420 DnaA_homol_Hda DnaA 98.7 1.1E-07 2.3E-12 95.6 13.4 170 83-289 22-203 (226)
44 PRK07003 DNA polymerase III su 98.7 6.3E-07 1.4E-11 100.1 20.1 194 78-287 16-221 (830)
45 COG4886 Leucine-rich repeat (L 98.7 6.9E-09 1.5E-13 113.9 4.8 183 457-693 111-294 (394)
46 PF13401 AAA_22: AAA domain; P 98.7 2.2E-08 4.7E-13 90.9 6.7 118 104-223 3-125 (131)
47 PRK14960 DNA polymerase III su 98.7 4.5E-07 9.7E-12 100.2 17.6 180 78-284 15-216 (702)
48 PRK14963 DNA polymerase III su 98.7 7.7E-08 1.7E-12 106.2 11.7 194 78-284 14-214 (504)
49 KOG1259 Nischarin, modulator o 98.7 4.2E-09 9E-14 101.9 1.1 135 618-785 282-416 (490)
50 KOG0532 Leucine-rich repeat (L 98.7 6E-10 1.3E-14 117.0 -5.2 192 462-709 75-270 (722)
51 PRK14961 DNA polymerase III su 98.7 7.2E-07 1.6E-11 95.6 18.0 190 78-283 16-216 (363)
52 PRK14949 DNA polymerase III su 98.7 4.7E-07 1E-11 103.2 17.1 181 78-285 16-218 (944)
53 PRK12402 replication factor C 98.7 4.8E-07 1E-11 97.1 16.7 196 78-286 15-225 (337)
54 PRK12323 DNA polymerase III su 98.7 5.3E-07 1.2E-11 99.4 16.7 197 78-285 16-223 (700)
55 PF13173 AAA_14: AAA domain 98.7 8.3E-08 1.8E-12 86.3 8.8 119 106-246 3-127 (128)
56 PRK06645 DNA polymerase III su 98.7 8E-07 1.7E-11 97.7 18.0 193 78-283 21-225 (507)
57 PRK04195 replication factor C 98.6 3.3E-06 7.2E-11 94.3 22.5 247 78-366 14-271 (482)
58 PLN03025 replication factor C 98.6 4.5E-07 9.7E-12 95.7 14.8 181 78-283 13-196 (319)
59 PTZ00202 tuzin; Provisional 98.6 2.7E-06 5.9E-11 88.5 19.6 169 73-253 257-433 (550)
60 PRK14956 DNA polymerase III su 98.6 4.7E-07 1E-11 97.4 14.4 194 78-283 18-218 (484)
61 PRK14957 DNA polymerase III su 98.6 9.2E-07 2E-11 97.9 17.0 184 78-288 16-222 (546)
62 PRK00440 rfc replication facto 98.6 1.2E-06 2.6E-11 93.2 17.5 180 78-284 17-200 (319)
63 KOG1909 Ran GTPase-activating 98.6 1.1E-08 2.4E-13 101.7 1.1 148 617-779 154-310 (382)
64 PF14580 LRR_9: Leucine-rich r 98.6 4.3E-08 9.3E-13 91.6 4.8 103 461-572 41-150 (175)
65 cd00009 AAA The AAA+ (ATPases 98.6 5.1E-07 1.1E-11 83.9 12.1 124 81-224 1-130 (151)
66 PF13191 AAA_16: AAA ATPase do 98.6 6.4E-08 1.4E-12 93.9 6.1 51 79-132 1-51 (185)
67 PRK05564 DNA polymerase III su 98.6 2.1E-06 4.5E-11 90.4 17.7 180 78-287 4-190 (313)
68 PRK14962 DNA polymerase III su 98.6 2.6E-06 5.7E-11 93.4 18.8 186 78-290 14-222 (472)
69 cd01128 rho_factor Transcripti 98.5 2.4E-07 5.3E-12 92.4 9.1 89 105-194 16-113 (249)
70 COG1474 CDC6 Cdc6-related prot 98.5 3.7E-06 7.9E-11 89.1 18.4 207 78-286 17-237 (366)
71 PRK07994 DNA polymerase III su 98.5 1.9E-06 4.2E-11 96.8 17.1 192 78-285 16-218 (647)
72 PRK08691 DNA polymerase III su 98.5 1.5E-06 3.4E-11 97.0 16.0 180 78-284 16-217 (709)
73 COG4886 Leucine-rich repeat (L 98.5 6.3E-08 1.4E-12 106.3 5.0 164 455-671 132-296 (394)
74 PF14580 LRR_9: Leucine-rich r 98.5 6.2E-08 1.3E-12 90.6 4.0 108 458-575 15-126 (175)
75 PRK08727 hypothetical protein; 98.5 2E-06 4.3E-11 86.1 15.0 148 106-284 42-201 (233)
76 PRK13341 recombination factor 98.5 9.7E-07 2.1E-11 101.4 14.1 172 78-282 28-212 (725)
77 PRK08903 DnaA regulatory inact 98.5 1.7E-06 3.7E-11 86.7 14.4 153 104-291 41-203 (227)
78 PRK14964 DNA polymerase III su 98.5 3.4E-06 7.4E-11 92.0 17.6 179 78-283 13-213 (491)
79 COG3903 Predicted ATPase [Gene 98.5 3.1E-07 6.8E-12 94.4 8.8 235 104-350 13-258 (414)
80 PRK14951 DNA polymerase III su 98.5 3E-06 6.4E-11 95.2 17.2 194 78-284 16-222 (618)
81 TIGR02397 dnaX_nterm DNA polym 98.5 5.3E-06 1.2E-10 89.7 18.9 182 78-287 14-218 (355)
82 KOG1259 Nischarin, modulator o 98.5 1.9E-08 4.2E-13 97.3 -0.1 100 462-571 284-383 (490)
83 PRK08084 DNA replication initi 98.5 1.9E-06 4.2E-11 86.2 13.9 153 105-288 45-210 (235)
84 PRK05896 DNA polymerase III su 98.5 3.5E-06 7.6E-11 93.3 17.0 195 78-288 16-222 (605)
85 PRK14955 DNA polymerase III su 98.5 2.1E-06 4.5E-11 93.3 15.1 197 78-283 16-224 (397)
86 PLN03150 hypothetical protein; 98.5 1.6E-07 3.4E-12 108.0 6.7 104 463-571 419-524 (623)
87 TIGR02903 spore_lon_C ATP-depe 98.5 1.9E-06 4.1E-11 98.3 15.1 203 78-290 154-398 (615)
88 PRK14958 DNA polymerase III su 98.4 4.4E-06 9.6E-11 92.7 16.5 180 78-284 16-217 (509)
89 PRK09112 DNA polymerase III su 98.4 2.9E-06 6.2E-11 89.6 14.2 197 77-288 22-241 (351)
90 PRK09111 DNA polymerase III su 98.4 5.3E-06 1.2E-10 93.4 17.0 196 78-286 24-232 (598)
91 PRK14969 DNA polymerase III su 98.4 6E-06 1.3E-10 92.4 16.6 183 78-287 16-221 (527)
92 TIGR00678 holB DNA polymerase 98.4 1.1E-05 2.4E-10 78.1 16.2 151 105-283 14-187 (188)
93 PRK14959 DNA polymerase III su 98.4 7.4E-06 1.6E-10 91.3 16.7 198 78-291 16-225 (624)
94 KOG3207 Beta-tubulin folding c 98.4 5.1E-08 1.1E-12 99.7 -0.5 115 457-574 141-258 (505)
95 PRK05642 DNA replication initi 98.4 5E-06 1.1E-10 83.2 13.5 155 105-290 45-211 (234)
96 COG2255 RuvB Holliday junction 98.4 6.7E-06 1.4E-10 80.0 13.5 173 78-283 26-219 (332)
97 PRK07471 DNA polymerase III su 98.4 1.5E-05 3.2E-10 84.7 17.5 197 78-288 19-239 (365)
98 PLN03150 hypothetical protein; 98.4 9.8E-07 2.1E-11 101.5 9.1 98 450-552 430-528 (623)
99 PRK09087 hypothetical protein; 98.4 3.3E-06 7.1E-11 83.7 11.6 141 105-286 44-194 (226)
100 PRK07940 DNA polymerase III su 98.4 1.5E-05 3.2E-10 85.5 17.1 183 78-287 5-213 (394)
101 TIGR01242 26Sp45 26S proteasom 98.3 3.6E-06 7.7E-11 90.7 12.5 179 78-281 122-328 (364)
102 PF05621 TniB: Bacterial TniB 98.3 2.9E-05 6.3E-10 78.0 17.9 205 77-285 33-259 (302)
103 PRK09376 rho transcription ter 98.3 9.4E-07 2E-11 91.7 7.4 88 106-194 170-266 (416)
104 KOG1909 Ran GTPase-activating 98.3 8.9E-08 1.9E-12 95.4 -0.1 259 457-748 25-309 (382)
105 KOG2028 ATPase related to the 98.3 8.4E-06 1.8E-10 81.6 13.7 157 104-282 161-331 (554)
106 PRK14954 DNA polymerase III su 98.3 1E-05 2.3E-10 91.2 16.0 199 78-285 16-227 (620)
107 PRK08451 DNA polymerase III su 98.3 2.1E-05 4.5E-10 86.8 17.9 179 78-286 14-217 (535)
108 PF13855 LRR_8: Leucine rich r 98.3 4.8E-07 1E-11 69.1 3.7 58 492-550 2-60 (61)
109 PRK07764 DNA polymerase III su 98.3 1.6E-05 3.4E-10 92.8 17.8 190 78-283 15-217 (824)
110 PRK14087 dnaA chromosomal repl 98.3 1.5E-05 3.3E-10 87.4 16.8 169 105-289 141-321 (450)
111 PF00308 Bac_DnaA: Bacterial d 98.3 1.1E-05 2.5E-10 79.5 14.2 164 104-287 33-208 (219)
112 KOG2120 SCF ubiquitin ligase, 98.3 2.4E-08 5.1E-13 96.8 -5.0 181 492-747 186-373 (419)
113 PRK14952 DNA polymerase III su 98.3 2.7E-05 5.9E-10 87.2 18.3 196 78-289 13-222 (584)
114 PRK07133 DNA polymerase III su 98.3 3.1E-05 6.6E-10 87.9 18.3 193 78-287 18-220 (725)
115 PRK14970 DNA polymerase III su 98.3 2.4E-05 5.2E-10 84.7 17.0 178 78-282 17-204 (367)
116 PRK14971 DNA polymerase III su 98.3 2.2E-05 4.8E-10 89.2 16.7 178 78-283 17-218 (614)
117 PRK14950 DNA polymerase III su 98.3 1.5E-05 3.3E-10 90.8 15.5 194 78-286 16-220 (585)
118 TIGR00767 rho transcription te 98.3 3.1E-06 6.8E-11 88.4 8.9 88 106-194 169-265 (415)
119 KOG4341 F-box protein containi 98.2 9.6E-08 2.1E-12 97.2 -2.5 291 462-808 138-443 (483)
120 PF13855 LRR_8: Leucine rich r 98.2 7.2E-07 1.6E-11 68.2 2.9 59 652-710 1-60 (61)
121 PRK06305 DNA polymerase III su 98.2 3.9E-05 8.6E-10 84.2 17.5 182 78-287 17-223 (451)
122 PRK14948 DNA polymerase III su 98.2 5E-05 1.1E-09 86.4 18.6 195 78-286 16-221 (620)
123 PRK14953 DNA polymerase III su 98.2 5.9E-05 1.3E-09 83.4 18.7 182 78-286 16-219 (486)
124 PRK11331 5-methylcytosine-spec 98.2 9E-06 1.9E-10 86.5 11.3 121 78-209 175-298 (459)
125 PRK06647 DNA polymerase III su 98.2 6E-05 1.3E-09 84.7 18.3 191 78-284 16-217 (563)
126 KOG0989 Replication factor C, 98.2 1.7E-05 3.7E-10 78.2 12.0 188 78-286 36-230 (346)
127 PHA02544 44 clamp loader, smal 98.2 3.7E-05 7.9E-10 81.5 14.8 149 77-252 20-171 (316)
128 PRK06620 hypothetical protein; 98.1 5.7E-05 1.2E-09 74.1 14.9 135 106-285 45-187 (214)
129 PRK05563 DNA polymerase III su 98.1 0.00011 2.4E-09 83.0 18.5 190 78-283 16-216 (559)
130 KOG2227 Pre-initiation complex 98.1 4.6E-05 1E-09 79.5 14.0 212 76-289 148-374 (529)
131 PRK14965 DNA polymerase III su 98.1 6.3E-05 1.4E-09 85.3 16.3 194 78-287 16-221 (576)
132 PF14516 AAA_35: AAA-like doma 98.1 0.00022 4.7E-09 75.5 19.2 202 76-294 9-246 (331)
133 CHL00181 cbbX CbbX; Provisiona 98.1 0.00011 2.5E-09 75.5 16.5 162 79-256 24-211 (287)
134 PRK03992 proteasome-activating 98.1 1.8E-05 3.9E-10 85.5 11.1 179 78-281 131-337 (389)
135 KOG0531 Protein phosphatase 1, 98.1 7.9E-07 1.7E-11 97.7 0.5 105 460-574 70-174 (414)
136 TIGR02881 spore_V_K stage V sp 98.1 7.6E-05 1.7E-09 76.3 15.0 162 79-256 7-193 (261)
137 TIGR00362 DnaA chromosomal rep 98.1 0.00015 3.2E-09 79.5 17.6 161 105-285 136-308 (405)
138 PRK14088 dnaA chromosomal repl 98.0 0.00011 2.4E-09 80.7 15.7 160 105-285 130-303 (440)
139 TIGR03345 VI_ClpV1 type VI sec 98.0 5.2E-05 1.1E-09 89.8 13.9 182 78-281 187-390 (852)
140 PRK12422 chromosomal replicati 98.0 0.00017 3.6E-09 79.0 16.9 155 105-281 141-307 (445)
141 TIGR02880 cbbX_cfxQ probable R 98.0 0.00018 3.8E-09 74.2 16.2 133 107-255 60-209 (284)
142 PRK00149 dnaA chromosomal repl 98.0 0.00013 2.8E-09 81.0 16.4 160 104-285 147-320 (450)
143 PRK07399 DNA polymerase III su 98.0 0.00019 4.2E-09 74.7 16.4 198 78-287 4-221 (314)
144 KOG0531 Protein phosphatase 1, 98.0 1.1E-06 2.3E-11 96.7 -0.5 108 457-574 90-198 (414)
145 TIGR02639 ClpA ATP-dependent C 98.0 8E-05 1.7E-09 87.6 14.9 156 78-254 182-358 (731)
146 KOG2543 Origin recognition com 98.0 4.3E-05 9.3E-10 77.6 10.5 167 77-253 5-192 (438)
147 PRK10536 hypothetical protein; 98.0 0.0003 6.4E-09 69.4 15.5 136 78-224 55-213 (262)
148 PF05673 DUF815: Protein of un 98.0 0.00026 5.7E-09 68.9 14.8 126 74-226 23-153 (249)
149 PRK14086 dnaA chromosomal repl 97.9 0.00027 5.9E-09 78.7 16.9 159 106-284 315-485 (617)
150 COG3267 ExeA Type II secretory 97.9 0.00086 1.9E-08 65.0 17.6 181 104-289 50-247 (269)
151 COG5238 RNA1 Ran GTPase-activa 97.9 2.1E-06 4.6E-11 82.5 0.0 258 458-778 26-314 (388)
152 CHL00095 clpC Clp protease ATP 97.9 9.7E-05 2.1E-09 88.0 13.4 155 78-252 179-352 (821)
153 PRK05707 DNA polymerase III su 97.9 0.00041 8.9E-09 72.7 15.7 161 104-287 21-203 (328)
154 TIGR00602 rad24 checkpoint pro 97.8 0.00014 2.9E-09 82.2 12.6 201 76-281 82-317 (637)
155 PF00004 AAA: ATPase family as 97.8 5.6E-05 1.2E-09 68.5 7.9 96 108-223 1-111 (132)
156 PRK15386 type III secretion pr 97.8 5.7E-05 1.2E-09 79.6 8.7 73 616-707 48-120 (426)
157 TIGR03689 pup_AAA proteasome A 97.8 0.00034 7.4E-09 76.9 14.9 167 78-254 182-378 (512)
158 KOG2120 SCF ubiquitin ligase, 97.8 1.1E-06 2.3E-11 85.6 -4.3 162 615-802 205-374 (419)
159 PF12799 LRR_4: Leucine Rich r 97.8 3E-05 6.5E-10 54.0 4.1 34 492-526 2-35 (44)
160 PTZ00361 26 proteosome regulat 97.8 0.00014 3.1E-09 78.7 11.3 158 79-256 184-369 (438)
161 smart00382 AAA ATPases associa 97.8 0.0002 4.4E-09 65.6 10.5 87 106-196 3-90 (148)
162 PF12799 LRR_4: Leucine Rich r 97.7 3.2E-05 6.9E-10 53.9 3.6 40 515-555 1-40 (44)
163 COG0593 DnaA ATPase involved i 97.7 0.00063 1.4E-08 72.0 14.9 139 104-259 112-262 (408)
164 TIGR03346 chaperone_ClpB ATP-d 97.7 0.00037 8.1E-09 83.3 14.7 156 78-254 173-349 (852)
165 PRK15386 type III secretion pr 97.7 0.00015 3.2E-09 76.6 9.8 76 458-550 48-123 (426)
166 PRK11034 clpA ATP-dependent Cl 97.7 0.00043 9.4E-09 80.4 14.0 157 78-254 186-362 (758)
167 PTZ00454 26S protease regulato 97.7 0.00055 1.2E-08 73.7 13.7 178 79-281 146-351 (398)
168 PRK08769 DNA polymerase III su 97.7 0.0017 3.7E-08 67.4 16.8 176 86-288 12-209 (319)
169 PRK08116 hypothetical protein; 97.7 0.00018 3.9E-09 73.4 9.0 103 106-223 115-220 (268)
170 KOG1859 Leucine-rich repeat pr 97.7 1E-06 2.2E-11 95.6 -7.5 176 484-710 102-290 (1096)
171 PRK08058 DNA polymerase III su 97.6 0.0011 2.5E-08 69.9 15.3 163 79-253 6-181 (329)
172 PRK10865 protein disaggregatio 97.6 0.00044 9.6E-09 82.3 13.4 46 78-129 178-223 (857)
173 KOG0991 Replication factor C, 97.6 0.00024 5.3E-09 67.0 8.4 115 77-218 26-147 (333)
174 PF13177 DNA_pol3_delta2: DNA 97.6 0.0015 3.2E-08 61.2 13.6 137 82-242 1-162 (162)
175 COG0542 clpA ATP-binding subun 97.6 0.00018 3.8E-09 81.8 8.5 135 78-223 491-643 (786)
176 COG2812 DnaX DNA polymerase II 97.6 0.00021 4.6E-09 77.9 8.8 189 78-282 16-215 (515)
177 CHL00176 ftsH cell division pr 97.6 0.00096 2.1E-08 76.1 13.9 178 78-280 183-387 (638)
178 TIGR01241 FtsH_fam ATP-depende 97.5 0.0014 3.1E-08 73.7 14.5 181 76-281 53-260 (495)
179 COG1373 Predicted ATPase (AAA+ 97.5 0.0013 2.8E-08 71.3 13.5 119 107-250 39-163 (398)
180 TIGR02640 gas_vesic_GvpN gas v 97.5 0.003 6.5E-08 64.5 15.5 124 85-224 9-161 (262)
181 PRK12377 putative replication 97.5 0.00048 1E-08 68.8 9.4 101 106-223 102-205 (248)
182 KOG4341 F-box protein containi 97.5 5.4E-06 1.2E-10 84.8 -4.7 263 491-807 138-417 (483)
183 PRK08181 transposase; Validate 97.5 0.00059 1.3E-08 69.1 9.8 100 107-224 108-209 (269)
184 PRK06090 DNA polymerase III su 97.5 0.0043 9.2E-08 64.4 16.2 167 86-288 11-202 (319)
185 TIGR02639 ClpA ATP-dependent C 97.4 0.00099 2.1E-08 78.5 12.8 134 78-223 454-603 (731)
186 PF02562 PhoH: PhoH-like prote 97.4 0.00023 5E-09 68.3 6.1 132 81-224 3-156 (205)
187 PF01695 IstB_IS21: IstB-like 97.4 0.00018 3.9E-09 68.3 5.4 100 106-224 48-150 (178)
188 PRK06871 DNA polymerase III su 97.4 0.0064 1.4E-07 63.3 17.0 178 86-284 10-200 (325)
189 COG1223 Predicted ATPase (AAA+ 97.4 0.0022 4.9E-08 61.8 12.3 178 78-280 121-318 (368)
190 TIGR03346 chaperone_ClpB ATP-d 97.4 0.00068 1.5E-08 81.1 11.2 136 78-223 565-717 (852)
191 KOG4579 Leucine-rich repeat (L 97.4 9.9E-06 2.1E-10 69.8 -3.1 101 464-572 29-133 (177)
192 KOG1859 Leucine-rich repeat pr 97.4 6.8E-06 1.5E-10 89.5 -5.2 110 454-574 179-291 (1096)
193 PRK10865 protein disaggregatio 97.4 0.0013 2.8E-08 78.4 13.0 137 79-223 569-720 (857)
194 PRK07952 DNA replication prote 97.4 0.00096 2.1E-08 66.5 10.0 103 105-223 99-204 (244)
195 PRK08939 primosomal protein Dn 97.4 0.00079 1.7E-08 69.9 9.7 122 82-223 135-260 (306)
196 PF10443 RNA12: RNA12 protein; 97.4 0.016 3.5E-07 61.3 19.0 200 83-298 1-289 (431)
197 PF04665 Pox_A32: Poxvirus A32 97.4 0.00047 1E-08 67.8 7.4 35 107-143 15-49 (241)
198 KOG2982 Uncharacterized conser 97.4 2.9E-05 6.3E-10 75.9 -1.2 44 735-783 222-265 (418)
199 PRK10787 DNA-binding ATP-depen 97.4 0.001 2.3E-08 78.0 11.3 166 77-254 321-506 (784)
200 KOG1514 Origin recognition com 97.3 0.005 1.1E-07 68.0 15.4 204 78-288 396-622 (767)
201 PRK13531 regulatory ATPase Rav 97.3 0.00097 2.1E-08 72.0 10.0 152 79-253 21-193 (498)
202 TIGR03345 VI_ClpV1 type VI sec 97.3 0.00075 1.6E-08 80.1 10.1 136 78-223 566-718 (852)
203 PRK04132 replication factor C 97.3 0.0037 8.1E-08 72.9 15.3 152 113-284 574-728 (846)
204 PRK08118 topology modulation p 97.3 0.00011 2.3E-09 69.2 2.3 34 107-140 3-37 (167)
205 COG1484 DnaC DNA replication p 97.3 0.00067 1.4E-08 68.4 8.1 80 106-202 106-185 (254)
206 KOG0741 AAA+-type ATPase [Post 97.3 0.0032 7E-08 66.8 13.2 150 102-277 535-704 (744)
207 PRK09183 transposase/IS protei 97.3 0.00079 1.7E-08 68.3 8.7 100 106-223 103-205 (259)
208 PRK06526 transposase; Provisio 97.3 0.00057 1.2E-08 68.9 7.2 100 106-224 99-201 (254)
209 COG1222 RPT1 ATP-dependent 26S 97.3 0.0097 2.1E-07 60.6 15.4 187 79-291 152-371 (406)
210 PRK06921 hypothetical protein; 97.3 0.0014 2.9E-08 66.8 9.6 99 105-223 117-224 (266)
211 TIGR00763 lon ATP-dependent pr 97.3 0.0011 2.4E-08 78.6 10.3 52 78-129 320-371 (775)
212 COG0470 HolB ATPase involved i 97.3 0.0021 4.6E-08 68.5 11.7 142 79-240 2-167 (325)
213 PF07693 KAP_NTPase: KAP famil 97.2 0.016 3.4E-07 61.8 18.1 46 83-131 1-46 (325)
214 KOG2982 Uncharacterized conser 97.2 9.6E-05 2.1E-09 72.3 1.0 88 459-552 68-159 (418)
215 PRK07993 DNA polymerase III su 97.2 0.012 2.6E-07 62.0 16.7 183 86-286 10-203 (334)
216 KOG0733 Nuclear AAA ATPase (VC 97.2 0.0051 1.1E-07 66.6 13.7 99 76-194 188-292 (802)
217 CHL00095 clpC Clp protease ATP 97.2 0.0013 2.8E-08 78.6 10.3 138 78-223 509-661 (821)
218 PRK06964 DNA polymerase III su 97.2 0.0079 1.7E-07 63.1 14.5 93 183-287 131-225 (342)
219 PRK05541 adenylylsulfate kinas 97.2 0.003 6.4E-08 60.4 10.5 36 104-141 6-41 (176)
220 PRK04296 thymidine kinase; Pro 97.2 0.00078 1.7E-08 65.0 6.5 113 106-225 3-117 (190)
221 COG0466 Lon ATP-dependent Lon 97.2 0.0017 3.6E-08 72.0 9.6 166 77-254 322-508 (782)
222 smart00763 AAA_PrkA PrkA AAA d 97.2 0.00038 8.3E-09 72.3 4.3 51 79-129 52-102 (361)
223 cd00561 CobA_CobO_BtuR ATP:cor 97.1 0.0055 1.2E-07 56.3 11.2 116 107-225 4-139 (159)
224 PRK07261 topology modulation p 97.1 0.0011 2.4E-08 62.7 7.0 34 107-140 2-36 (171)
225 TIGR02237 recomb_radB DNA repa 97.1 0.0017 3.7E-08 64.1 8.5 48 104-154 11-58 (209)
226 PRK09361 radB DNA repair and r 97.1 0.0026 5.7E-08 63.5 9.9 46 104-152 22-67 (225)
227 PRK12608 transcription termina 97.1 0.0027 5.8E-08 66.5 9.8 102 86-193 119-229 (380)
228 COG2607 Predicted ATPase (AAA+ 97.1 0.0078 1.7E-07 57.7 11.8 123 75-224 57-183 (287)
229 KOG4579 Leucine-rich repeat (L 97.1 0.00013 2.8E-09 63.1 -0.1 94 456-557 47-141 (177)
230 KOG2004 Mitochondrial ATP-depe 97.1 0.00097 2.1E-08 73.3 6.5 105 77-193 410-514 (906)
231 PRK06835 DNA replication prote 97.1 0.0016 3.6E-08 68.0 8.0 102 106-223 184-288 (329)
232 PF14532 Sigma54_activ_2: Sigm 97.0 0.00078 1.7E-08 61.4 4.7 108 81-224 1-110 (138)
233 TIGR01243 CDC48 AAA family ATP 97.0 0.0045 9.8E-08 73.3 12.2 181 78-283 178-383 (733)
234 KOG1969 DNA replication checkp 97.0 0.0025 5.4E-08 70.5 8.7 88 102-209 323-412 (877)
235 PRK11034 clpA ATP-dependent Cl 97.0 0.0033 7.2E-08 73.2 10.3 134 78-222 458-606 (758)
236 cd01394 radB RadB. The archaea 97.0 0.0046 1E-07 61.5 10.1 43 104-148 18-60 (218)
237 CHL00195 ycf46 Ycf46; Provisio 97.0 0.01 2.2E-07 65.6 13.3 180 78-281 228-429 (489)
238 KOG3665 ZYG-1-like serine/thre 96.9 0.00062 1.3E-08 78.4 4.0 32 537-569 171-202 (699)
239 cd01393 recA_like RecA is a b 96.9 0.0057 1.2E-07 61.2 10.5 87 104-193 18-123 (226)
240 PF00158 Sigma54_activat: Sigm 96.9 0.0021 4.6E-08 60.3 6.8 133 80-224 1-144 (168)
241 PF00910 RNA_helicase: RNA hel 96.9 0.0022 4.8E-08 55.3 6.4 22 108-129 1-22 (107)
242 PRK11889 flhF flagellar biosyn 96.9 0.015 3.3E-07 61.1 13.4 113 104-219 240-357 (436)
243 TIGR02902 spore_lonB ATP-depen 96.9 0.0053 1.1E-07 69.2 10.4 44 78-127 65-108 (531)
244 PF08423 Rad51: Rad51; InterP 96.8 0.0078 1.7E-07 61.0 10.6 89 104-193 37-142 (256)
245 PF00448 SRP54: SRP54-type pro 96.8 0.0042 9.1E-08 60.0 8.2 89 105-195 1-94 (196)
246 cd01133 F1-ATPase_beta F1 ATP 96.8 0.0055 1.2E-07 61.6 9.0 86 106-193 70-172 (274)
247 PF07728 AAA_5: AAA domain (dy 96.8 0.0005 1.1E-08 62.8 1.6 89 108-209 2-90 (139)
248 KOG2228 Origin recognition com 96.8 0.012 2.7E-07 59.2 11.1 172 78-254 24-219 (408)
249 PF13207 AAA_17: AAA domain; P 96.8 0.00097 2.1E-08 59.2 3.2 22 107-128 1-22 (121)
250 TIGR01243 CDC48 AAA family ATP 96.8 0.016 3.5E-07 68.7 14.1 179 78-281 453-657 (733)
251 KOG1644 U2-associated snRNP A' 96.8 0.0018 3.9E-08 60.3 4.7 93 644-747 56-150 (233)
252 PLN00020 ribulose bisphosphate 96.8 0.033 7.1E-07 57.9 14.1 27 103-129 146-172 (413)
253 PF07724 AAA_2: AAA domain (Cd 96.8 0.0018 3.9E-08 61.0 4.8 43 105-148 3-45 (171)
254 PRK08699 DNA polymerase III su 96.7 0.015 3.1E-07 61.1 12.0 71 183-253 112-184 (325)
255 cd01123 Rad51_DMC1_radA Rad51_ 96.7 0.0065 1.4E-07 61.2 9.2 89 104-193 18-124 (235)
256 TIGR01650 PD_CobS cobaltochela 96.7 0.047 1E-06 56.5 15.2 61 78-151 45-105 (327)
257 PHA02244 ATPase-like protein 96.7 0.016 3.4E-07 60.6 11.8 43 78-128 96-142 (383)
258 cd01120 RecA-like_NTPases RecA 96.7 0.0058 1.3E-07 57.5 8.0 40 107-148 1-40 (165)
259 KOG0734 AAA+-type ATPase conta 96.7 0.012 2.6E-07 62.8 10.6 158 77-254 303-484 (752)
260 TIGR02238 recomb_DMC1 meiotic 96.7 0.012 2.6E-07 61.4 10.7 58 104-162 95-156 (313)
261 KOG0730 AAA+-type ATPase [Post 96.7 0.013 2.8E-07 64.6 11.1 181 76-281 432-637 (693)
262 TIGR03499 FlhF flagellar biosy 96.6 0.012 2.6E-07 60.7 10.2 87 104-193 193-281 (282)
263 PHA00729 NTP-binding motif con 96.6 0.0078 1.7E-07 58.6 8.2 25 104-128 16-40 (226)
264 cd03228 ABCC_MRP_Like The MRP 96.6 0.021 4.5E-07 54.2 11.0 124 106-238 29-167 (171)
265 PRK06067 flagellar accessory p 96.6 0.021 4.5E-07 57.4 11.7 86 104-194 24-130 (234)
266 KOG0735 AAA+-type ATPase [Post 96.6 0.027 5.9E-07 62.4 12.9 161 105-287 431-616 (952)
267 KOG2035 Replication factor C, 96.6 0.0084 1.8E-07 58.6 8.1 185 80-286 15-228 (351)
268 KOG0731 AAA+-type ATPase conta 96.6 0.039 8.4E-07 62.8 14.5 183 78-284 311-521 (774)
269 PRK15455 PrkA family serine pr 96.6 0.0015 3.3E-08 71.5 3.4 50 79-128 77-126 (644)
270 PRK12723 flagellar biosynthesi 96.6 0.013 2.8E-07 62.6 10.4 104 104-210 173-282 (388)
271 cd03247 ABCC_cytochrome_bd The 96.6 0.024 5.1E-07 54.3 11.2 125 106-238 29-169 (178)
272 PRK05703 flhF flagellar biosyn 96.6 0.03 6.6E-07 61.0 13.3 103 105-209 221-326 (424)
273 cd03214 ABC_Iron-Siderophores_ 96.6 0.033 7.2E-07 53.3 12.2 119 106-227 26-161 (180)
274 PF13604 AAA_30: AAA domain; P 96.5 0.023 4.9E-07 55.2 11.0 105 106-225 19-132 (196)
275 KOG0744 AAA+-type ATPase [Post 96.5 0.0053 1.1E-07 61.3 6.4 79 105-193 177-259 (423)
276 TIGR02012 tigrfam_recA protein 96.5 0.0067 1.5E-07 62.8 7.2 83 104-193 54-142 (321)
277 COG1875 NYN ribonuclease and A 96.5 0.018 3.9E-07 58.8 9.9 133 80-225 226-389 (436)
278 PRK06696 uridine kinase; Valid 96.5 0.0031 6.7E-08 62.8 4.7 45 82-129 2-46 (223)
279 PRK12724 flagellar biosynthesi 96.5 0.02 4.4E-07 61.0 10.7 99 105-208 223-325 (432)
280 cd00983 recA RecA is a bacter 96.4 0.0077 1.7E-07 62.4 7.3 83 104-193 54-142 (325)
281 TIGR02239 recomb_RAD51 DNA rep 96.4 0.02 4.3E-07 59.9 10.4 57 104-161 95-155 (316)
282 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.4 0.038 8.3E-07 50.6 11.1 104 106-228 27-131 (144)
283 PRK13695 putative NTPase; Prov 96.4 0.0067 1.5E-07 57.8 6.3 23 107-129 2-24 (174)
284 PRK11608 pspF phage shock prot 96.4 0.011 2.5E-07 62.3 8.6 135 78-224 6-151 (326)
285 cd03238 ABC_UvrA The excision 96.4 0.021 4.6E-07 54.0 9.4 121 106-238 22-161 (176)
286 PF03215 Rad17: Rad17 cell cyc 96.4 0.023 5E-07 63.3 11.1 60 78-142 19-78 (519)
287 PRK12727 flagellar biosynthesi 96.4 0.017 3.7E-07 63.2 9.8 89 104-194 349-438 (559)
288 cd00544 CobU Adenosylcobinamid 96.4 0.02 4.2E-07 53.8 8.9 148 108-282 2-167 (169)
289 KOG1644 U2-associated snRNP A' 96.4 0.0046 9.9E-08 57.7 4.5 79 492-572 43-123 (233)
290 TIGR01817 nifA Nif-specific re 96.3 0.032 6.9E-07 63.6 12.4 136 76-223 194-340 (534)
291 cd03115 SRP The signal recogni 96.3 0.025 5.4E-07 53.8 9.9 23 107-129 2-24 (173)
292 cd03216 ABC_Carb_Monos_I This 96.3 0.03 6.5E-07 52.6 10.2 115 106-227 27-145 (163)
293 PF01583 APS_kinase: Adenylyls 96.3 0.0057 1.2E-07 55.9 5.0 35 106-142 3-37 (156)
294 PRK12726 flagellar biosynthesi 96.3 0.04 8.7E-07 57.8 11.7 90 104-195 205-296 (407)
295 cd03223 ABCD_peroxisomal_ALDP 96.3 0.052 1.1E-06 51.1 11.8 116 106-228 28-152 (166)
296 COG0542 clpA ATP-binding subun 96.3 0.01 2.3E-07 67.8 8.1 155 78-253 170-345 (786)
297 PRK15429 formate hydrogenlyase 96.3 0.017 3.7E-07 68.0 10.3 135 78-224 376-521 (686)
298 PF13671 AAA_33: AAA domain; P 96.3 0.033 7.2E-07 51.0 10.2 21 107-127 1-21 (143)
299 PRK00771 signal recognition pa 96.3 0.045 9.9E-07 59.6 12.6 57 104-162 94-151 (437)
300 PRK09354 recA recombinase A; P 96.3 0.0099 2.1E-07 62.1 7.3 83 104-193 59-147 (349)
301 PRK05800 cobU adenosylcobinami 96.3 0.0064 1.4E-07 57.2 5.4 80 107-193 3-85 (170)
302 KOG2739 Leucine-rich acidic nu 96.3 0.0013 2.7E-08 64.1 0.6 91 646-747 59-153 (260)
303 KOG1051 Chaperone HSP104 and r 96.3 0.023 4.9E-07 66.1 10.7 122 79-211 563-687 (898)
304 PLN03187 meiotic recombination 96.3 0.026 5.7E-07 59.3 10.3 58 104-162 125-186 (344)
305 PRK14722 flhF flagellar biosyn 96.3 0.035 7.6E-07 58.8 11.3 90 104-195 136-226 (374)
306 PRK04301 radA DNA repair and r 96.3 0.033 7.1E-07 58.8 11.2 57 104-161 101-161 (317)
307 PRK07132 DNA polymerase III su 96.3 0.19 4.1E-06 52.0 16.3 152 105-287 18-185 (299)
308 PRK08533 flagellar accessory p 96.3 0.046 9.9E-07 54.5 11.5 48 105-156 24-71 (230)
309 PF00485 PRK: Phosphoribulokin 96.3 0.017 3.7E-07 56.1 8.4 80 107-188 1-87 (194)
310 COG0468 RecA RecA/RadA recombi 96.2 0.022 4.9E-07 57.6 9.2 89 103-193 58-150 (279)
311 cd02027 APSK Adenosine 5'-phos 96.2 0.049 1.1E-06 50.2 10.9 23 107-129 1-23 (149)
312 PRK08233 hypothetical protein; 96.2 0.013 2.7E-07 56.4 7.3 25 105-129 3-27 (182)
313 TIGR02974 phageshock_pspF psp 96.2 0.025 5.4E-07 59.7 10.0 131 80-223 1-143 (329)
314 PRK14974 cell division protein 96.2 0.032 7E-07 58.5 10.7 100 104-206 139-246 (336)
315 PTZ00494 tuzin-like protein; P 96.2 0.52 1.1E-05 50.0 19.0 168 74-253 367-543 (664)
316 KOG2739 Leucine-rich acidic nu 96.2 0.003 6.6E-08 61.5 2.6 40 513-552 63-104 (260)
317 cd01124 KaiC KaiC is a circadi 96.1 0.022 4.8E-07 55.0 8.5 45 107-155 1-45 (187)
318 cd03222 ABC_RNaseL_inhibitor T 96.1 0.049 1.1E-06 51.6 10.5 102 106-228 26-136 (177)
319 COG1618 Predicted nucleotide k 96.1 0.0049 1.1E-07 55.3 3.3 25 106-130 6-30 (179)
320 TIGR00708 cobA cob(I)alamin ad 96.1 0.068 1.5E-06 49.8 10.8 115 106-224 6-140 (173)
321 cd01122 GP4d_helicase GP4d_hel 96.1 0.055 1.2E-06 55.8 11.7 52 105-159 30-81 (271)
322 COG0572 Udk Uridine kinase [Nu 96.1 0.011 2.4E-07 56.8 5.8 77 104-185 7-85 (218)
323 PRK10733 hflB ATP-dependent me 96.1 0.042 9E-07 63.7 11.7 158 78-255 152-336 (644)
324 PTZ00035 Rad51 protein; Provis 96.1 0.049 1.1E-06 57.5 11.1 57 104-161 117-177 (337)
325 KOG0733 Nuclear AAA ATPase (VC 96.1 0.07 1.5E-06 58.3 12.1 155 105-281 545-718 (802)
326 PRK05022 anaerobic nitric oxid 96.0 0.035 7.5E-07 62.7 10.6 135 77-224 186-332 (509)
327 KOG1947 Leucine rich repeat pr 96.0 0.00061 1.3E-08 77.2 -3.6 62 460-526 186-254 (482)
328 TIGR01425 SRP54_euk signal rec 96.0 0.11 2.5E-06 56.0 13.8 26 104-129 99-124 (429)
329 COG4608 AppF ABC-type oligopep 96.0 0.031 6.7E-07 55.4 8.7 123 105-230 39-176 (268)
330 PLN03186 DNA repair protein RA 96.0 0.041 8.8E-07 58.0 10.2 58 104-162 122-183 (342)
331 PRK05986 cob(I)alamin adenolsy 96.0 0.065 1.4E-06 50.7 10.5 117 106-224 23-158 (191)
332 COG0714 MoxR-like ATPases [Gen 96.0 0.026 5.7E-07 59.9 9.1 113 78-209 24-137 (329)
333 TIGR01360 aden_kin_iso1 adenyl 96.0 0.058 1.3E-06 52.1 10.6 25 104-128 2-26 (188)
334 KOG3665 ZYG-1-like serine/thre 96.0 0.0061 1.3E-07 70.4 4.2 88 457-552 168-263 (699)
335 COG2884 FtsE Predicted ATPase 96.0 0.057 1.2E-06 50.1 9.6 62 170-231 141-204 (223)
336 TIGR03877 thermo_KaiC_1 KaiC d 96.0 0.046 1E-06 54.9 10.2 48 104-155 20-67 (237)
337 cd02025 PanK Pantothenate kina 96.0 0.022 4.7E-07 56.3 7.6 23 107-129 1-23 (220)
338 TIGR02858 spore_III_AA stage I 96.0 0.12 2.6E-06 52.5 13.1 116 104-228 110-233 (270)
339 COG1066 Sms Predicted ATP-depe 96.0 0.016 3.5E-07 60.3 6.7 81 105-194 93-178 (456)
340 cd03246 ABCC_Protease_Secretio 96.0 0.056 1.2E-06 51.4 10.1 127 106-238 29-168 (173)
341 PRK00889 adenylylsulfate kinas 96.0 0.047 1E-06 52.0 9.6 25 105-129 4-28 (175)
342 COG0464 SpoVK ATPases of the A 96.0 0.084 1.8E-06 59.7 13.2 158 78-255 242-424 (494)
343 PRK10867 signal recognition pa 95.9 0.097 2.1E-06 56.9 12.9 27 103-129 98-124 (433)
344 PRK07667 uridine kinase; Provi 95.9 0.014 2.9E-07 56.6 5.8 39 87-129 3-41 (193)
345 TIGR00959 ffh signal recogniti 95.9 0.086 1.9E-06 57.3 12.4 42 87-128 78-122 (428)
346 TIGR02236 recomb_radA DNA repa 95.9 0.064 1.4E-06 56.5 11.4 57 104-161 94-154 (310)
347 PRK00625 shikimate kinase; Pro 95.9 0.066 1.4E-06 50.5 10.2 22 107-128 2-23 (173)
348 TIGR01359 UMP_CMP_kin_fam UMP- 95.9 0.054 1.2E-06 52.1 9.9 22 107-128 1-22 (183)
349 PRK05439 pantothenate kinase; 95.9 0.041 8.8E-07 56.8 9.4 25 103-127 84-108 (311)
350 cd03230 ABC_DR_subfamily_A Thi 95.9 0.082 1.8E-06 50.2 10.9 117 106-228 27-159 (173)
351 PF13481 AAA_25: AAA domain; P 95.9 0.022 4.8E-07 55.3 7.1 41 106-146 33-81 (193)
352 PF13238 AAA_18: AAA domain; P 95.8 0.0063 1.4E-07 54.6 2.9 21 108-128 1-21 (129)
353 cd01131 PilT Pilus retraction 95.8 0.025 5.4E-07 55.1 7.2 110 107-227 3-112 (198)
354 COG1102 Cmk Cytidylate kinase 95.8 0.021 4.4E-07 51.4 5.8 44 107-163 2-45 (179)
355 PRK06002 fliI flagellum-specif 95.8 0.043 9.2E-07 59.3 9.4 84 105-193 165-263 (450)
356 TIGR00064 ftsY signal recognit 95.8 0.031 6.8E-07 57.1 8.0 90 103-195 70-165 (272)
357 KOG2123 Uncharacterized conser 95.8 0.00041 8.8E-09 67.5 -5.3 84 651-750 18-101 (388)
358 COG1136 SalX ABC-type antimicr 95.8 0.15 3.2E-06 49.8 12.0 69 169-239 145-216 (226)
359 cd01125 repA Hexameric Replica 95.8 0.072 1.6E-06 53.7 10.5 22 107-128 3-24 (239)
360 PTZ00301 uridine kinase; Provi 95.7 0.017 3.6E-07 56.4 5.6 24 105-128 3-26 (210)
361 KOG0736 Peroxisome assembly fa 95.7 0.28 6E-06 55.4 15.2 151 78-249 672-851 (953)
362 PF00154 RecA: recA bacterial 95.7 0.029 6.2E-07 58.0 7.4 83 104-193 52-140 (322)
363 TIGR00554 panK_bact pantothena 95.7 0.043 9.4E-07 56.2 8.7 25 103-127 60-84 (290)
364 PRK13948 shikimate kinase; Pro 95.7 0.095 2.1E-06 49.9 10.4 25 104-128 9-33 (182)
365 TIGR03878 thermo_KaiC_2 KaiC d 95.7 0.055 1.2E-06 55.1 9.5 41 104-146 35-75 (259)
366 PRK14723 flhF flagellar biosyn 95.7 0.14 2.9E-06 59.3 13.3 87 105-194 185-273 (767)
367 PF00006 ATP-synt_ab: ATP synt 95.7 0.04 8.7E-07 53.8 7.9 82 106-193 16-114 (215)
368 PRK09270 nucleoside triphospha 95.7 0.033 7.1E-07 55.7 7.6 27 103-129 31-57 (229)
369 PTZ00088 adenylate kinase 1; P 95.7 0.042 9.1E-07 54.5 8.1 22 107-128 8-29 (229)
370 COG0563 Adk Adenylate kinase a 95.7 0.047 1E-06 51.7 8.1 22 107-128 2-23 (178)
371 cd01121 Sms Sms (bacterial rad 95.6 0.058 1.3E-06 57.7 9.6 81 105-193 82-167 (372)
372 cd03281 ABC_MSH5_euk MutS5 hom 95.6 0.025 5.4E-07 55.6 6.4 23 105-127 29-51 (213)
373 COG0465 HflB ATP-dependent Zn 95.6 0.1 2.2E-06 58.3 11.6 184 75-283 147-357 (596)
374 cd02019 NK Nucleoside/nucleoti 95.6 0.0083 1.8E-07 46.9 2.4 22 107-128 1-22 (69)
375 PRK05973 replicative DNA helic 95.6 0.054 1.2E-06 53.6 8.6 48 105-156 64-111 (237)
376 cd03229 ABC_Class3 This class 95.6 0.077 1.7E-06 50.7 9.6 23 106-128 27-49 (178)
377 KOG2123 Uncharacterized conser 95.6 0.00042 9.1E-09 67.4 -5.9 104 619-743 18-123 (388)
378 cd01135 V_A-ATPase_B V/A-type 95.6 0.071 1.5E-06 53.6 9.4 88 106-193 70-175 (276)
379 cd02021 GntK Gluconate kinase 95.6 0.12 2.6E-06 47.7 10.6 22 107-128 1-22 (150)
380 cd03369 ABCC_NFT1 Domain 2 of 95.6 0.23 5.1E-06 48.7 13.2 23 106-128 35-57 (207)
381 PRK12678 transcription termina 95.5 0.03 6.4E-07 61.4 7.0 87 106-193 417-512 (672)
382 TIGR00390 hslU ATP-dependent p 95.5 0.038 8.3E-07 58.7 7.7 52 78-129 12-71 (441)
383 KOG0743 AAA+-type ATPase [Post 95.5 0.21 4.6E-06 53.1 12.9 123 106-256 236-385 (457)
384 COG4088 Predicted nucleotide k 95.5 0.036 7.9E-07 51.9 6.5 24 106-129 2-25 (261)
385 KOG1532 GTPase XAB1, interacts 95.5 0.06 1.3E-06 52.7 8.2 104 102-215 16-137 (366)
386 PRK05480 uridine/cytidine kina 95.5 0.01 2.2E-07 58.5 3.3 26 104-129 5-30 (209)
387 TIGR00455 apsK adenylylsulfate 95.5 0.14 3.1E-06 49.2 11.1 26 104-129 17-42 (184)
388 cd03217 ABC_FeS_Assembly ABC-t 95.5 0.085 1.8E-06 51.5 9.7 23 106-128 27-49 (200)
389 PF03308 ArgK: ArgK protein; 95.5 0.019 4.1E-07 56.5 4.9 65 86-154 14-78 (266)
390 COG2842 Uncharacterized ATPase 95.5 0.37 8E-06 48.5 13.9 126 76-214 70-195 (297)
391 PRK13539 cytochrome c biogenes 95.5 0.2 4.4E-06 49.2 12.4 64 177-243 138-203 (207)
392 cd03283 ABC_MutS-like MutS-lik 95.5 0.11 2.5E-06 50.3 10.2 22 106-127 26-47 (199)
393 TIGR03574 selen_PSTK L-seryl-t 95.4 0.086 1.9E-06 53.5 9.8 23 107-129 1-23 (249)
394 cd00267 ABC_ATPase ABC (ATP-bi 95.4 0.057 1.2E-06 50.4 7.8 118 106-229 26-145 (157)
395 TIGR03881 KaiC_arch_4 KaiC dom 95.4 0.11 2.4E-06 52.0 10.4 40 104-145 19-58 (229)
396 PRK03846 adenylylsulfate kinas 95.4 0.041 8.9E-07 53.6 7.1 25 104-128 23-47 (198)
397 PF07726 AAA_3: ATPase family 95.4 0.0063 1.4E-07 53.0 1.2 27 108-136 2-28 (131)
398 PF08298 AAA_PrkA: PrkA AAA do 95.4 0.016 3.5E-07 59.8 4.3 51 78-128 61-111 (358)
399 KOG0728 26S proteasome regulat 95.4 0.35 7.5E-06 46.8 12.7 154 81-254 150-331 (404)
400 cd03244 ABCC_MRP_domain2 Domai 95.4 0.2 4.4E-06 49.8 12.1 23 106-128 31-53 (221)
401 TIGR00150 HI0065_YjeE ATPase, 95.4 0.024 5.3E-07 50.3 4.7 42 85-130 6-47 (133)
402 COG1703 ArgK Putative periplas 95.4 0.016 3.4E-07 57.8 3.9 66 88-157 38-103 (323)
403 COG1126 GlnQ ABC-type polar am 95.4 0.35 7.6E-06 46.2 12.4 121 106-229 29-201 (240)
404 cd01136 ATPase_flagellum-secre 95.3 0.099 2.1E-06 54.4 9.9 82 106-193 70-168 (326)
405 cd01132 F1_ATPase_alpha F1 ATP 95.3 0.051 1.1E-06 54.6 7.5 82 106-193 70-170 (274)
406 PF08433 KTI12: Chromatin asso 95.3 0.035 7.5E-07 56.5 6.4 24 106-129 2-25 (270)
407 PRK04328 hypothetical protein; 95.3 0.056 1.2E-06 54.7 7.9 41 104-146 22-62 (249)
408 PRK13765 ATP-dependent proteas 95.3 0.032 7E-07 63.6 6.7 75 78-162 31-105 (637)
409 TIGR00235 udk uridine kinase. 95.3 0.013 2.8E-07 57.6 3.2 25 104-128 5-29 (207)
410 PRK12597 F0F1 ATP synthase sub 95.3 0.058 1.3E-06 58.8 8.3 87 106-193 144-246 (461)
411 PRK06762 hypothetical protein; 95.3 0.013 2.8E-07 55.3 2.9 23 106-128 3-25 (166)
412 PRK06547 hypothetical protein; 95.3 0.023 4.9E-07 53.6 4.5 25 104-128 14-38 (172)
413 PF06745 KaiC: KaiC; InterPro 95.2 0.035 7.5E-07 55.5 6.1 48 104-155 18-66 (226)
414 COG1121 ZnuC ABC-type Mn/Zn tr 95.2 0.15 3.3E-06 50.5 10.3 120 106-227 31-202 (254)
415 PF00560 LRR_1: Leucine Rich R 95.2 0.0089 1.9E-07 34.5 1.1 20 492-512 1-20 (22)
416 cd03282 ABC_MSH4_euk MutS4 hom 95.2 0.044 9.5E-07 53.4 6.4 118 105-231 29-158 (204)
417 COG0396 sufC Cysteine desulfur 95.2 0.26 5.7E-06 47.4 11.1 25 106-130 31-55 (251)
418 cd03253 ABCC_ATM1_transporter 95.2 0.35 7.6E-06 48.6 13.2 23 106-128 28-50 (236)
419 KOG3347 Predicted nucleotide k 95.2 0.025 5.3E-07 50.0 3.9 33 106-145 8-40 (176)
420 TIGR02655 circ_KaiC circadian 95.1 0.095 2.1E-06 58.7 9.8 53 104-161 262-314 (484)
421 KOG0729 26S proteasome regulat 95.1 0.15 3.2E-06 49.6 9.5 51 78-128 177-234 (435)
422 PRK14721 flhF flagellar biosyn 95.1 0.088 1.9E-06 56.8 9.0 88 104-193 190-278 (420)
423 COG1428 Deoxynucleoside kinase 95.1 0.015 3.2E-07 55.1 2.7 26 105-130 4-29 (216)
424 PRK10820 DNA-binding transcrip 95.1 0.055 1.2E-06 61.2 7.8 134 78-224 204-349 (520)
425 PRK06793 fliI flagellum-specif 95.1 0.096 2.1E-06 56.6 9.2 86 105-193 156-255 (432)
426 PRK06731 flhF flagellar biosyn 95.1 0.22 4.8E-06 50.5 11.2 104 104-209 74-181 (270)
427 cd02028 UMPK_like Uridine mono 95.0 0.027 5.9E-07 53.7 4.4 23 107-129 1-23 (179)
428 CHL00206 ycf2 Ycf2; Provisiona 95.0 0.25 5.5E-06 61.7 13.3 26 104-129 1629-1654(2281)
429 PRK05922 type III secretion sy 95.0 0.13 2.9E-06 55.5 9.9 84 106-193 158-256 (434)
430 TIGR01313 therm_gnt_kin carboh 95.0 0.16 3.6E-06 47.6 9.7 21 108-128 1-21 (163)
431 COG0529 CysC Adenylylsulfate k 95.0 0.068 1.5E-06 49.0 6.5 26 104-129 22-47 (197)
432 PTZ00185 ATPase alpha subunit; 95.0 0.13 2.8E-06 56.0 9.7 86 106-193 190-298 (574)
433 PRK04040 adenylate kinase; Pro 95.0 0.018 4E-07 55.2 3.1 23 106-128 3-25 (188)
434 PRK08927 fliI flagellum-specif 95.0 0.11 2.4E-06 56.1 9.3 85 105-193 158-257 (442)
435 cd03237 ABC_RNaseL_inhibitor_d 95.0 0.35 7.7E-06 48.8 12.5 23 106-128 26-48 (246)
436 PRK03839 putative kinase; Prov 95.0 0.017 3.7E-07 55.4 2.9 23 107-129 2-24 (180)
437 PRK08149 ATP synthase SpaL; Va 95.0 0.12 2.7E-06 55.7 9.5 85 105-193 151-250 (428)
438 PRK11388 DNA-binding transcrip 95.0 0.078 1.7E-06 62.0 8.8 131 78-223 325-466 (638)
439 PRK05201 hslU ATP-dependent pr 95.0 0.059 1.3E-06 57.4 6.9 52 77-128 14-73 (443)
440 PF00560 LRR_1: Leucine Rich R 95.0 0.012 2.6E-07 34.0 1.0 18 541-558 2-19 (22)
441 PF03796 DnaB_C: DnaB-like hel 94.9 0.17 3.7E-06 51.7 10.3 109 106-220 20-136 (259)
442 cd03213 ABCG_EPDR ABCG transpo 94.9 0.28 6.1E-06 47.6 11.2 23 106-128 36-58 (194)
443 cd03233 ABC_PDR_domain1 The pl 94.9 0.27 5.8E-06 48.0 11.2 23 106-128 34-56 (202)
444 PRK08972 fliI flagellum-specif 94.9 0.095 2.1E-06 56.4 8.5 84 106-193 163-261 (444)
445 PRK06995 flhF flagellar biosyn 94.9 0.14 3.1E-06 56.2 9.9 88 105-194 256-344 (484)
446 cd03232 ABC_PDR_domain2 The pl 94.9 0.19 4.1E-06 48.7 10.0 22 106-127 34-55 (192)
447 PRK00279 adk adenylate kinase; 94.9 0.15 3.2E-06 50.5 9.4 22 107-128 2-23 (215)
448 cd03215 ABC_Carb_Monos_II This 94.9 0.45 9.7E-06 45.6 12.4 23 106-128 27-49 (182)
449 PRK06217 hypothetical protein; 94.9 0.043 9.3E-07 52.7 5.3 23 107-129 3-25 (183)
450 TIGR00764 lon_rel lon-related 94.9 0.07 1.5E-06 61.2 7.8 76 77-162 17-92 (608)
451 KOG0739 AAA+-type ATPase [Post 94.9 0.39 8.5E-06 47.8 11.6 95 79-194 134-235 (439)
452 COG0003 ArsA Predicted ATPase 94.8 0.037 8E-07 57.4 5.0 48 105-154 2-49 (322)
453 PRK15453 phosphoribulokinase; 94.8 0.11 2.3E-06 52.4 8.0 25 104-128 4-28 (290)
454 cd03250 ABCC_MRP_domain1 Domai 94.8 0.64 1.4E-05 45.5 13.7 23 106-128 32-54 (204)
455 cd03245 ABCC_bacteriocin_expor 94.8 0.36 7.7E-06 48.0 12.0 24 105-128 30-53 (220)
456 PF12775 AAA_7: P-loop contain 94.8 0.017 3.8E-07 58.9 2.6 87 88-193 23-109 (272)
457 PRK09544 znuC high-affinity zi 94.8 0.35 7.7E-06 49.0 12.1 23 106-128 31-53 (251)
458 PRK10463 hydrogenase nickel in 94.8 0.1 2.2E-06 53.1 7.9 27 103-129 102-128 (290)
459 PRK09099 type III secretion sy 94.8 0.12 2.7E-06 56.0 9.0 86 105-193 163-262 (441)
460 COG1419 FlhF Flagellar GTP-bin 94.8 0.29 6.2E-06 51.7 11.3 104 105-211 203-310 (407)
461 PF06309 Torsin: Torsin; Inte 94.8 0.042 9E-07 47.8 4.4 51 78-128 25-76 (127)
462 TIGR03740 galliderm_ABC gallid 94.8 0.5 1.1E-05 47.0 12.9 23 106-128 27-49 (223)
463 TIGR03880 KaiC_arch_3 KaiC dom 94.7 0.34 7.4E-06 48.2 11.6 41 104-146 15-55 (224)
464 TIGR03498 FliI_clade3 flagella 94.7 0.12 2.5E-06 55.9 8.6 85 106-193 141-239 (418)
465 PRK10416 signal recognition pa 94.7 0.16 3.4E-06 53.2 9.3 27 104-130 113-139 (318)
466 PRK00131 aroK shikimate kinase 94.7 0.025 5.5E-07 53.8 3.3 24 105-128 4-27 (175)
467 COG1936 Predicted nucleotide k 94.7 0.023 5.1E-07 51.9 2.7 20 107-126 2-21 (180)
468 COG0467 RAD55 RecA-superfamily 94.7 0.065 1.4E-06 54.8 6.3 50 104-157 22-71 (260)
469 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.7 0.4 8.7E-06 48.3 12.1 23 106-128 30-52 (238)
470 PF01078 Mg_chelatase: Magnesi 94.7 0.052 1.1E-06 52.0 5.1 42 78-127 3-44 (206)
471 COG3640 CooC CO dehydrogenase 94.7 0.045 9.8E-07 52.6 4.6 42 107-149 2-43 (255)
472 COG1224 TIP49 DNA helicase TIP 94.6 0.12 2.6E-06 52.8 7.8 55 77-135 38-95 (450)
473 PF10236 DAP3: Mitochondrial r 94.6 0.24 5.2E-06 51.7 10.5 49 235-284 258-306 (309)
474 TIGR03496 FliI_clade1 flagella 94.6 0.14 3E-06 55.3 8.9 85 105-193 137-236 (411)
475 cd03254 ABCC_Glucan_exporter_l 94.6 0.45 9.8E-06 47.6 12.2 23 106-128 30-52 (229)
476 PRK13949 shikimate kinase; Pro 94.6 0.06 1.3E-06 50.7 5.5 23 107-129 3-25 (169)
477 PRK05917 DNA polymerase III su 94.6 0.48 1E-05 48.4 12.2 131 86-241 5-154 (290)
478 PRK14528 adenylate kinase; Pro 94.6 0.089 1.9E-06 50.6 6.7 23 106-128 2-24 (186)
479 TIGR02329 propionate_PrpR prop 94.6 0.089 1.9E-06 59.0 7.6 47 78-128 212-258 (526)
480 COG2401 ABC-type ATPase fused 94.6 0.09 1.9E-06 54.8 6.8 157 80-236 373-580 (593)
481 TIGR03575 selen_PSTK_euk L-ser 94.6 0.36 7.7E-06 50.7 11.5 22 108-129 2-23 (340)
482 cd02024 NRK1 Nicotinamide ribo 94.6 0.022 4.7E-07 54.4 2.3 22 107-128 1-22 (187)
483 TIGR00416 sms DNA repair prote 94.6 0.2 4.3E-06 55.3 10.1 40 104-145 93-132 (454)
484 PF03969 AFG1_ATPase: AFG1-lik 94.5 0.074 1.6E-06 56.6 6.5 101 104-222 61-166 (362)
485 PRK11823 DNA repair protein Ra 94.5 0.14 3E-06 56.5 8.9 81 105-193 80-165 (446)
486 cd02023 UMPK Uridine monophosp 94.5 0.022 4.7E-07 55.6 2.4 22 107-128 1-22 (198)
487 cd02029 PRK_like Phosphoribulo 94.5 0.087 1.9E-06 52.6 6.5 77 107-185 1-85 (277)
488 TIGR02322 phosphon_PhnN phosph 94.5 0.027 5.7E-07 54.0 2.9 24 106-129 2-25 (179)
489 PRK09280 F0F1 ATP synthase sub 94.5 0.13 2.7E-06 56.0 8.3 87 106-193 145-247 (463)
490 PF02374 ArsA_ATPase: Anion-tr 94.5 0.047 1E-06 56.8 4.9 44 106-151 2-45 (305)
491 cd00227 CPT Chloramphenicol (C 94.5 0.028 6.1E-07 53.5 3.0 23 106-128 3-25 (175)
492 cd04159 Arl10_like Arl10-like 94.5 0.5 1.1E-05 43.7 11.5 21 108-128 2-22 (159)
493 PRK10751 molybdopterin-guanine 94.5 0.036 7.8E-07 51.9 3.5 26 104-129 5-30 (173)
494 KOG4252 GTP-binding protein [S 94.5 0.18 3.8E-06 45.8 7.6 37 107-144 22-58 (246)
495 TIGR01040 V-ATPase_V1_B V-type 94.5 0.15 3.3E-06 55.0 8.6 88 106-193 142-256 (466)
496 cd01672 TMPK Thymidine monopho 94.5 0.14 3.1E-06 49.8 8.1 23 107-129 2-24 (200)
497 COG4618 ArpD ABC-type protease 94.4 0.16 3.6E-06 54.5 8.6 23 106-128 363-385 (580)
498 cd01428 ADK Adenylate kinase ( 94.4 0.34 7.4E-06 46.9 10.6 21 108-128 2-22 (194)
499 cd03240 ABC_Rad50 The catalyti 94.4 0.45 9.7E-06 46.5 11.4 61 177-239 132-196 (204)
500 COG2274 SunT ABC-type bacterio 94.4 0.25 5.4E-06 57.4 10.9 53 176-228 619-673 (709)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-77 Score=686.89 Aligned_cols=524 Identities=29% Similarity=0.471 Sum_probs=410.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhcccCcccccC----C-CCCCCCCCccccccCCccccchHHHHHHHHHHcCCCCCCCC
Q 003367 29 VPHYDIAVKIKNLSKTLDDIAREKDRFSFSLTS----G-TRELKPPMTTSVIDVSKVRGRDEEKKTIIDLLLGSSSQEKM 103 (826)
Q Consensus 29 ~~~~~~~~~i~~~~~~l~~i~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~ 103 (826)
.+++..+..+..+.+++.++.+....+...... . ........+.+..+... ||.+..++++.+.|.+.+
T Consensus 105 ~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~----- 178 (889)
T KOG4658|consen 105 GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDD----- 178 (889)
T ss_pred hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCC-----
Confidence 445566666666666666666655555433211 1 11111233444444445 999999999999998763
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccc-cccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhh--hHHHHHHHHHHH
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVK-VDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVA--AFDTLLRHIEKS 180 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~l~~~ 180 (826)
..+|+|+||||+||||||++++++.. ++.+|+.++||+||+.++...++.+|++.++....... ..++++..+.+.
T Consensus 179 -~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~ 257 (889)
T KOG4658|consen 179 -VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNL 257 (889)
T ss_pred -CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHH
Confidence 28999999999999999999999987 99999999999999999999999999999886443332 246889999999
Q ss_pred hcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccHHHHhh-ccccceEEccCCCCchhHHHHHHhhhcCCC
Q 003367 181 VKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKEDVAKM-MRTTSMILLAKLPDNDCWSLFSQIAFSGRT 259 (826)
Q Consensus 181 l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 259 (826)
|++|||+|||||||+. .+|+.+..+++....||+|++|||++.|+.. +++...++++.|+.+|||.||++.||....
T Consensus 258 L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~ 335 (889)
T KOG4658|consen 258 LEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL 335 (889)
T ss_pred hccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccc
Confidence 9999999999999975 4599999999999899999999999999998 777889999999999999999999987644
Q ss_pred cccchhhHHHHHHHHHhcCCCchhHHHHhhhhcCCcCHHHHHHhhhhhccc----ccccCcCcchhhhhhccCCcHHHHH
Q 003367 260 TEECQKLTDIGRMIADKCNGLPLAAKTSGSLLSLKTTMEQWKTVLDSEIWK----VEDVEKGLLPPLVISYFDLPSIVRR 335 (826)
Q Consensus 260 ~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~w~~~~~~~~~~----~~~~~~~i~~~l~~sy~~L~~~~k~ 335 (826)
. .++.+.++|++|+++|+|+|||++++|+.|+.+++.++|+++.+...+. .....+.+++++++||+.||++.|.
T Consensus 336 ~-~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~ 414 (889)
T KOG4658|consen 336 G-SHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKS 414 (889)
T ss_pred c-ccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHH
Confidence 3 3345899999999999999999999999999999999999998865444 2333567999999999999999999
Q ss_pred HhhhhccCCCCceeCHHHHHHHHHHcCCccc-CCCchHHHHHHHHHHHHhhccCcccccCCCCCCeeeEEEEchhHHHHH
Q 003367 336 CFSYCAIFPKGYEINKDHLIKLWMAQGYLKV-EGREDMELIGEECFVNLATRSFFQDFERSEYDGSIISCKMHDIVHDFA 414 (826)
Q Consensus 336 ~fl~~a~fp~~~~i~~~~li~~w~a~g~i~~-~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~~mhdlv~dl~ 414 (826)
||+|||+||+||.|+++.|+.+|+||||+.+ .++..+++.|+.|+.+|++++++...... +... .|+|||++|++|
T Consensus 415 CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~-~~kmHDvvRe~a 491 (889)
T KOG4658|consen 415 CFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKE-TVKMHDVVREMA 491 (889)
T ss_pred HHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--ccee-EEEeeHHHHHHH
Confidence 9999999999999999999999999999988 44688999999999999999999876643 3333 799999999999
Q ss_pred HHhhCCCCC---------------------CCcceEEEEEecCCCCccccCCcccchhhh------------chhhhccC
Q 003367 415 QFLAQPMCN---------------------ETKLRSLSIVHKSNSSTIFPGIRDSVADIA------------LPSLFDRL 461 (826)
Q Consensus 415 ~~~~~~~~~---------------------~~~lr~l~l~~~~~~~~~~~~~~~~~l~~~------------~~~~~~~l 461 (826)
.+++++.+. +..+|++++.++.. ...........++++ .+.+|..+
T Consensus 492 l~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~-~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m 570 (889)
T KOG4658|consen 492 LWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKI-EHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSL 570 (889)
T ss_pred HHHhccccccccceEEECCcCccccccccchhheeEEEEeccch-hhccCCCCCCccceEEEeecchhhhhcCHHHHhhC
Confidence 999993322 33456777766632 112111121222222 23457888
Q ss_pred CCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCC
Q 003367 462 TCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINL 541 (826)
Q Consensus 462 ~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L 541 (826)
+.|+||||+ +|..+..+|+.|+.|.+||||+|+++. +..+|..+.+|+.|.+||+..+.....+|..+..|++|
T Consensus 571 ~~LrVLDLs-----~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~L 644 (889)
T KOG4658|consen 571 PLLRVLDLS-----GNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSL 644 (889)
T ss_pred cceEEEECC-----CCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccc
Confidence 888888888 566777888888888888888888887 77888888888888888888877666777667778888
Q ss_pred CeeeecCcccccCCccCCCCCCCCcCCceee
Q 003367 542 RHLINEGTPLLYLPKGLERLTCLRTLSEFTV 572 (826)
Q Consensus 542 ~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~ 572 (826)
|+|.+.......-...++.+.+|++|....+
T Consensus 645 r~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 645 RVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred cEEEeeccccccchhhHHhhhcccchhhhee
Confidence 8888775442222222444455555544443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=8.8e-65 Score=617.21 Aligned_cols=682 Identities=23% Similarity=0.313 Sum_probs=457.7
Q ss_pred HHHHHHHHHHHHHHHhcccCcccccC---------CCCCCCCCCccccccCCccccchHHHHHHHHHHcCCCCCCCCCcc
Q 003367 36 VKIKNLSKTLDDIAREKDRFSFSLTS---------GTRELKPPMTTSVIDVSKVRGRDEEKKTIIDLLLGSSSQEKMSLP 106 (826)
Q Consensus 36 ~~i~~~~~~l~~i~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~ 106 (826)
.++++|++.|.+++.. .++.+.... ...........+..+.+.+|||+++++++..+|.... .+++
T Consensus 134 ~~~~~w~~al~~~~~~-~g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~----~~~~ 208 (1153)
T PLN03210 134 DEKIQWKQALTDVANI-LGYHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLES----EEVR 208 (1153)
T ss_pred hHHHHHHHHHHHHhCc-CceecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHcccc----CceE
Confidence 4788999999998774 333332111 0000111112333455779999999999999986543 3689
Q ss_pred EEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEe---CCCC-----------C-HHHHHHHHHHHhcccch-hhhhH
Q 003367 107 IISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCF---SDPV-----------D-EIRVAKAILESFRDVVS-AVAAF 170 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~~-----------~-~~~~~~~i~~~l~~~~~-~~~~~ 170 (826)
+|+||||||+||||||+++|+ ++..+|++.+|+.. .... . ...++++++..+..... ....
T Consensus 209 vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~- 285 (1153)
T PLN03210 209 MVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH- 285 (1153)
T ss_pred EEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCC-
Confidence 999999999999999999999 56688988887742 1110 0 12233444444322111 1111
Q ss_pred HHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccHHHHhhccccceEEccCCCCchhHHHH
Q 003367 171 DTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKEDVAKMMRTTSMILLAKLPDNDCWSLF 250 (826)
Q Consensus 171 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~~v~~~~~~~~~~~l~~L~~~~~~~lf 250 (826)
...+++.++++|+||||||||+ ..+|+.+.....+.++||+||||||++.++..++...+|+++.+++++||+||
T Consensus 286 ---~~~~~~~L~~krvLLVLDdv~~--~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF 360 (1153)
T PLN03210 286 ---LGAMEERLKHRKVLIFIDDLDD--QDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMF 360 (1153)
T ss_pred ---HHHHHHHHhCCeEEEEEeCCCC--HHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHH
Confidence 1456778899999999999964 57899988877788899999999999999987777789999999999999999
Q ss_pred HHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHHhhhhcCCcCHHHHHHhhhhhcccccccCcCcchhhhhhccCCc
Q 003367 251 SQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTSGSLLSLKTTMEQWKTVLDSEIWKVEDVEKGLLPPLVISYFDLP 330 (826)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~ 330 (826)
+++||+... +++++.+++++|+++|+|+||||+++|++|+++ +.++|..++....... +..+..+|++||++|+
T Consensus 361 ~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~~---~~~I~~~L~~SYd~L~ 434 (1153)
T PLN03210 361 CRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNGL---DGKIEKTLRVSYDGLN 434 (1153)
T ss_pred HHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhCc---cHHHHHHHHHhhhccC
Confidence 999997653 345688999999999999999999999999876 6899999988754322 3468999999999998
Q ss_pred H-HHHHHhhhhccCCCCceeCHHHHHHHHHHcCCcccCCCchHHHHHHHHHHHHhhccCcccccCCCCCCeeeEEEEchh
Q 003367 331 S-IVRRCFSYCAIFPKGYEINKDHLIKLWMAQGYLKVEGREDMELIGEECFVNLATRSFFQDFERSEYDGSIISCKMHDI 409 (826)
Q Consensus 331 ~-~~k~~fl~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~~mhdl 409 (826)
+ ..|.||+++|+||.+..++ .+..|.+.+.... +.-+..|+++++++.... .++|||+
T Consensus 435 ~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----------~~~l~~L~~ksLi~~~~~--------~~~MHdL 493 (1153)
T PLN03210 435 NKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----------NIGLKNLVDKSLIHVRED--------IVEMHSL 493 (1153)
T ss_pred ccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc----------hhChHHHHhcCCEEEcCC--------eEEhhhH
Confidence 7 5999999999999987543 3667777765432 123888999999976421 5899999
Q ss_pred HHHHHHHhhCCCCC-----------------------CCcceEEEEEecCCCC-----ccccCCcc--------------
Q 003367 410 VHDFAQFLAQPMCN-----------------------ETKLRSLSIVHKSNSS-----TIFPGIRD-------------- 447 (826)
Q Consensus 410 v~dl~~~~~~~~~~-----------------------~~~lr~l~l~~~~~~~-----~~~~~~~~-------------- 447 (826)
+|++++.+++++.. ...++.+++....... ..+.....
T Consensus 494 l~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~ 573 (1153)
T PLN03210 494 LQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQK 573 (1153)
T ss_pred HHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccccccc
Confidence 99999999865431 1122322222110000 00000000
Q ss_pred cchhhhc------------------------hhhhccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCC
Q 003367 448 SVADIAL------------------------PSLFDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDA 503 (826)
Q Consensus 448 ~~l~~~~------------------------~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~ 503 (826)
......+ |..| .+.+|+.|+++ ++ .+..+|..+..+++|++|+|++|..
T Consensus 574 ~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~-----~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~ 646 (1153)
T PLN03210 574 KEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQ-----GS-KLEKLWDGVHSLTGLRNIDLRGSKN 646 (1153)
T ss_pred ccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECc-----Cc-cccccccccccCCCCCEEECCCCCC
Confidence 0000011 2222 23455556655 33 4555666666677777777776655
Q ss_pred ccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecC-cccccCCccCCCCCCCCcCCceeeCcccCcCccc
Q 003367 504 IYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEG-TPLLYLPKGLERLTCLRTLSEFTVSDIENVSKAG 582 (826)
Q Consensus 504 ~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~-~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~ 582 (826)
++.+|. ++.+++|++|++++|..+..+|..++++++|++|++++ +.+..+|..+ ++++|+.|++.+|..+...+..
T Consensus 647 l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~- 723 (1153)
T PLN03210 647 LKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI- 723 (1153)
T ss_pred cCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc-
Confidence 666664 66677777777777766666777777777777777764 3555666655 5666777666665543332211
Q ss_pred CcccccccccCCCceEEcccCCCCChhhhhhhhccCCCcCCceeeEeecCCCcccccchHH-HhhcCCCCCCcCeEEEec
Q 003367 583 SLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNE-VLEALQPSPDLEKLTICD 661 (826)
Q Consensus 583 ~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~-~~~~l~~~~~L~~L~L~~ 661 (826)
..+|..|. +. -..+..++ . ...+.+|..|.+..+... ........ .......+++|+.|+|++
T Consensus 724 -~~nL~~L~-L~----~n~i~~lP-------~-~~~l~~L~~L~l~~~~~~--~l~~~~~~l~~~~~~~~~sL~~L~Ls~ 787 (1153)
T PLN03210 724 -STNISWLD-LD----ETAIEEFP-------S-NLRLENLDELILCEMKSE--KLWERVQPLTPLMTMLSPSLTRLFLSD 787 (1153)
T ss_pred -cCCcCeee-cC----CCcccccc-------c-cccccccccccccccchh--hccccccccchhhhhccccchheeCCC
Confidence 11121111 00 00000000 0 012345555555432210 00000000 001122357899999999
Q ss_pred cCCCCCCCCcccCccCCcEEEEecCCCCCCCCCCCCCCccceeeccccccceEeCcccccCCCCccccCccCcCCCccce
Q 003367 662 YKSKIISPSWLMSLTELRMLNLQRCGKCEQLPSLGRLPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKF 741 (826)
Q Consensus 662 ~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 741 (826)
|.....+|.+++++++|+.|+|++|...+.+|...++++|+.|++++|..+..++. ..++|+.
T Consensus 788 n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~-----------------~~~nL~~ 850 (1153)
T PLN03210 788 IPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD-----------------ISTNISD 850 (1153)
T ss_pred CCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc-----------------cccccCE
Confidence 98766669999999999999999999888888655899999999999887654321 3467999
Q ss_pred eeccccccccccccccccccCcCCCCccceeeecCCCCCCCCCCCCcccCCcceEEEccccchHHH
Q 003367 742 LEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKLKALPDHLLLTTKMNELTMNWCSVLKER 807 (826)
Q Consensus 742 L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~ 807 (826)
|+|+++ .++.++ ..+..+++|+.|+|++|+.+..+|..+..+++|+.+++++|++|++.
T Consensus 851 L~Ls~n-~i~~iP------~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 851 LNLSRT-GIEEVP------WWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred eECCCC-CCccCh------HHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 999987 566554 35668999999999999999999988888999999999999988654
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=5.8e-44 Score=373.85 Aligned_cols=278 Identities=35% Similarity=0.608 Sum_probs=225.2
Q ss_pred chHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcc
Q 003367 83 RDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRD 162 (826)
Q Consensus 83 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 162 (826)
||.++++|.+.|.... .+.++|+|+||||+||||||++++++...+.+|+.++|+.++...+...++..|+.+++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7999999999998754 378999999999999999999999976688999999999999999999999999999987
Q ss_pred cch---hhhhHHHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccHHHHhhccc-cceEEc
Q 003367 163 VVS---AVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKEDVAKMMRT-TSMILL 238 (826)
Q Consensus 163 ~~~---~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~~v~~~~~~-~~~~~l 238 (826)
... ...+.++....+.+.++++++||||||||+ ...|+.+...++....|++||||||+..++..+.. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWD--EEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-S--HHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeecc--cccccccccccccccccccccccccccccccccccccccccc
Confidence 643 345667789999999999999999999964 56888888888877789999999999988876654 678999
Q ss_pred cCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHHhhhhcCCcCHHHHHHhhhhhccccc---ccC
Q 003367 239 AKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTSGSLLSLKTTMEQWKTVLDSEIWKVE---DVE 315 (826)
Q Consensus 239 ~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~w~~~~~~~~~~~~---~~~ 315 (826)
++|+.+||++||.+.++... ....+...+.+++|+++|+|+||||+++|++|+.+.+..+|+.+++....... +..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999987655 22344567789999999999999999999999776677889998876444432 234
Q ss_pred cCcchhhhhhccCCcHHHHHHhhhhccCCCCceeCHHHHHHHHHHcCCcccC
Q 003367 316 KGLLPPLVISYFDLPSIVRRCFSYCAIFPKGYEINKDHLIKLWMAQGYLKVE 367 (826)
Q Consensus 316 ~~i~~~l~~sy~~L~~~~k~~fl~~a~fp~~~~i~~~~li~~w~a~g~i~~~ 367 (826)
..+..++.+||+.||++.|.||+|||+||+++.|+++.++++|+++||+...
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 6789999999999999999999999999999999999999999999999764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=3e-24 Score=263.18 Aligned_cols=319 Identities=20% Similarity=0.226 Sum_probs=157.4
Q ss_pred chhhhccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccch
Q 003367 454 LPSLFDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQ 533 (826)
Q Consensus 454 ~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~ 533 (826)
+|..+.++++|++|+|+ +|.....+|..++++++|++|+|++|.+.+.+|..++++++|++|++++|.+.+.+|.
T Consensus 156 ~p~~~~~l~~L~~L~L~-----~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 230 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLG-----GNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY 230 (968)
T ss_pred CChHHhcCCCCCEEECc-----cCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh
Confidence 45666677777777776 3322334566667777777777777765566666677777777777777766666676
Q ss_pred hhhcccCCCeeeecCcccc-cCCccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhh
Q 003367 534 GIAKLINLRHLINEGTPLL-YLPKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAK 612 (826)
Q Consensus 534 ~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~ 612 (826)
.++++++|++|++++|.+. .+|..++++++|++|++..+...... ...+..+.+|..|. +... .+....
T Consensus 231 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~----Ls~n----~l~~~~ 300 (968)
T PLN00113 231 EIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI--PPSIFSLQKLISLD----LSDN----SLSGEI 300 (968)
T ss_pred hHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccC--chhHhhccCcCEEE----CcCC----eeccCC
Confidence 7777777777777766665 55666667777777766655442221 11122222222111 0000 000011
Q ss_pred hhhccCCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCC
Q 003367 613 SAKLESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQL 692 (826)
Q Consensus 613 ~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l 692 (826)
...+..+++|+.|+++.|.+. ...+..+..+++|+.|++++|.+.+.+|.+++.+++|+.|+|++|.+.+.+
T Consensus 301 p~~~~~l~~L~~L~l~~n~~~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~ 372 (968)
T PLN00113 301 PELVIQLQNLEILHLFSNNFT--------GKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI 372 (968)
T ss_pred ChhHcCCCCCcEEECCCCccC--------CcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeC
Confidence 122334444555554444321 111222333444444444444444433444444444444444444444433
Q ss_pred C-CCCCCCccceeeccccccceEeCcccccCCC----------CccccCccCcCCCccceeecccccccccccccccccc
Q 003367 693 P-SLGRLPSLESLVVEALSSVRRVGNEFLGIES----------DDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQK 761 (826)
Q Consensus 693 ~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~----------~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 761 (826)
| .+..+++|+.|+++++......+..+..... .....+.....+++|+.|++++|.....+ +.
T Consensus 373 p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~------~~ 446 (968)
T PLN00113 373 PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI------NS 446 (968)
T ss_pred ChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCcc------Ch
Confidence 3 3333444444444332211111100000000 00001111234566666666665322222 12
Q ss_pred CcCCCCccceeeecCCCCCCCCCCCCcccCCcceEEEcccc
Q 003367 762 DIKIMPRLHRLKLDGCHKLKALPDHLLLTTKMNELTMNWCS 802 (826)
Q Consensus 762 ~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 802 (826)
.+..+++|+.|++++|+....+|..+ ..++|+.|++++|.
T Consensus 447 ~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~ 486 (968)
T PLN00113 447 RKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQ 486 (968)
T ss_pred hhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCc
Confidence 33457777777777777666666543 34677788877775
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=7.3e-24 Score=259.71 Aligned_cols=316 Identities=19% Similarity=0.210 Sum_probs=214.1
Q ss_pred cCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhccc
Q 003367 460 RLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLI 539 (826)
Q Consensus 460 ~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~ 539 (826)
.+++|++|+|+ +|.....+|..++.+++|++|+|++|.+.+.+|..++++++|++|++++|.+.+.+|..+++++
T Consensus 138 ~l~~L~~L~Ls-----~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 212 (968)
T PLN00113 138 SIPNLETLDLS-----NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMK 212 (968)
T ss_pred ccCCCCEEECc-----CCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcC
Confidence 45666666666 3312234677777788888888888776667777788888888888888777777777788888
Q ss_pred CCCeeeecCcccc-cCCccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccC
Q 003367 540 NLRHLINEGTPLL-YLPKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLES 618 (826)
Q Consensus 540 ~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~ 618 (826)
+|++|++++|.+. .+|..++++++|++|++..+...... ...+..+.+|..|. +... .+.......+.+
T Consensus 213 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~----L~~n----~l~~~~p~~l~~ 282 (968)
T PLN00113 213 SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI--PSSLGNLKNLQYLF----LYQN----KLSGPIPPSIFS 282 (968)
T ss_pred CccEEECcCCccCCcCChhHhcCCCCCEEECcCceecccc--ChhHhCCCCCCEEE----CcCC----eeeccCchhHhh
Confidence 8888888877776 56777778888888877766553222 12233333333221 1000 011122334566
Q ss_pred CCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC-CCCC
Q 003367 619 KKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP-SLGR 697 (826)
Q Consensus 619 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~ 697 (826)
+.+|+.|+++.|.+. ...+..+..+++|+.|++++|.+.+..|.++..+++|+.|+|++|.+.+.+| .++.
T Consensus 283 l~~L~~L~Ls~n~l~--------~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 354 (968)
T PLN00113 283 LQKLISLDLSDNSLS--------GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354 (968)
T ss_pred ccCcCEEECcCCeec--------cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC
Confidence 778888888877643 2344556778899999999999988778899999999999999999988888 7888
Q ss_pred CCccceeeccccccceEeCcccccCCC----------CccccCccCcCCCccceeeccccccccccccccccccCcCCCC
Q 003367 698 LPSLESLVVEALSSVRRVGNEFLGIES----------DDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMP 767 (826)
Q Consensus 698 l~~L~~L~L~~~~~l~~~~~~~~~~~~----------~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~ 767 (826)
+++|+.|+++++......+..+..... .....+.....+++|+.|++++|...... +..+..++
T Consensus 355 ~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~------p~~~~~l~ 428 (968)
T PLN00113 355 HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL------PSEFTKLP 428 (968)
T ss_pred CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC------ChhHhcCC
Confidence 999999999876533333322221100 00012233456788888888888533332 34566789
Q ss_pred ccceeeecCCCCCCCCCCCCcccCCcceEEEccccch
Q 003367 768 RLHRLKLDGCHKLKALPDHLLLTTKMNELTMNWCSVL 804 (826)
Q Consensus 768 ~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l 804 (826)
+|+.|++++|.....+|..+..+++|+.|++++|...
T Consensus 429 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~ 465 (968)
T PLN00113 429 LVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFF 465 (968)
T ss_pred CCCEEECcCCcccCccChhhccCCCCcEEECcCceee
Confidence 9999999998776777777778889999999998643
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=5.4e-26 Score=235.93 Aligned_cols=324 Identities=24% Similarity=0.271 Sum_probs=250.4
Q ss_pred CCcceEEEEEecCCCCccccCCcccchhhhchhhhccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCC
Q 003367 424 ETKLRSLSIVHKSNSSTIFPGIRDSVADIALPSLFDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDA 503 (826)
Q Consensus 424 ~~~lr~l~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~ 503 (826)
..++.||++.+|... .+-..+..++.||.++++.|.+. -..+|..|.+|..|..||||+|+
T Consensus 54 lqkLEHLs~~HN~L~--------------~vhGELs~Lp~LRsv~~R~N~LK----nsGiP~diF~l~dLt~lDLShNq- 114 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLI--------------SVHGELSDLPRLRSVIVRDNNLK----NSGIPTDIFRLKDLTILDLSHNQ- 114 (1255)
T ss_pred HhhhhhhhhhhhhhH--------------hhhhhhccchhhHHHhhhccccc----cCCCCchhcccccceeeecchhh-
Confidence 455667777666221 12355778899999999965442 23579999999999999999999
Q ss_pred ccccchhhcCCCCCcEEeccCCCCCcccchh-hhcccCCCeeeecCcccccCCccCCCCCCCCcCCceeeCcccCcCccc
Q 003367 504 IYELPEALCDLCNLQTLDVSNCGNLHALPQG-IAKLINLRHLINEGTPLLYLPKGLERLTCLRTLSEFTVSDIENVSKAG 582 (826)
Q Consensus 504 ~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~ 582 (826)
+.+.|..+...+++-+|+||+|+ +..+|.. +.+|+.|-+|++|+|.+..+|+.+..|.+|++|.++++.. ...
T Consensus 115 L~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL-----~hf 188 (1255)
T KOG0444|consen 115 LREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPL-----NHF 188 (1255)
T ss_pred hhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChh-----hHH
Confidence 99999999999999999999998 6777754 5799999999999999999999999999999999988766 333
Q ss_pred CcccccccccCCCceEEcccCCCCChhhhhhhhccCCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEecc
Q 003367 583 SLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDY 662 (826)
Q Consensus 583 ~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 662 (826)
.++.|+.+..|. ...+.+........+.++..+.+|..++++.|++. .+++.+..+++|+.|+|++|
T Consensus 189 QLrQLPsmtsL~----vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp---------~vPecly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 189 QLRQLPSMTSLS----VLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP---------IVPECLYKLRNLRRLNLSGN 255 (1255)
T ss_pred HHhcCccchhhh----hhhcccccchhhcCCCchhhhhhhhhccccccCCC---------cchHHHhhhhhhheeccCcC
Confidence 444444444322 22222222223334456677788888888888743 45667778899999999999
Q ss_pred CCCCCCCCcccCccCCcEEEEecCCCCCCCC-CCCCCCccceeeccccccceEeCcccccCCCCccccCccCcCCCccce
Q 003367 663 KSKIISPSWLMSLTELRMLNLQRCGKCEQLP-SLGRLPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKF 741 (826)
Q Consensus 663 ~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 741 (826)
.++.+ ....+...+|+.|+||.|+++ .+| .++.|+.|+.|.+.++. | .|.|+ ++.++.+.+|+.
T Consensus 256 ~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~Nk-L-----~FeGi-------PSGIGKL~~Lev 320 (1255)
T KOG0444|consen 256 KITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNK-L-----TFEGI-------PSGIGKLIQLEV 320 (1255)
T ss_pred ceeee-eccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCc-c-----cccCC-------ccchhhhhhhHH
Confidence 99887 666677889999999999986 455 89999999999987433 2 23333 334667888999
Q ss_pred eeccccccccccccccccccCcCCCCccceeeecCCCCCCCCCCCCcccCCcceEEEccccchHHHh
Q 003367 742 LEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKLKALPDHLLLTTKMNELTMNWCSVLKERY 808 (826)
Q Consensus 742 L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~~ 808 (826)
+...+| .++-. |+++..++.|+.|.|+. +.+.++|.++.-++-|+.|++..+|+|.-..
T Consensus 321 f~aanN-~LElV------PEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 321 FHAANN-KLELV------PEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred HHhhcc-ccccC------chhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 999987 56655 45788899999999997 5678899999999999999999999987543
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=2e-22 Score=208.61 Aligned_cols=320 Identities=19% Similarity=0.221 Sum_probs=233.2
Q ss_pred CCcceEEEEEecCCCCccccCCcccchhhhchhhhccCCCCcEEecccccccccccccccc-ccccCCCCccEEEccCCC
Q 003367 424 ETKLRSLSIVHKSNSSTIFPGIRDSVADIALPSLFDRLTCLRTLCLRCHERHFCLSIARLP-RNIKKLKHLRYLNLSNND 502 (826)
Q Consensus 424 ~~~lr~l~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~l~~L~~L~Ls~~~ 502 (826)
...+.+|++.+|... +.-...++.++.||+|||+.|.++ .+| .+|..-.++++|+|++|+
T Consensus 124 sghl~~L~L~~N~I~-------------sv~se~L~~l~alrslDLSrN~is------~i~~~sfp~~~ni~~L~La~N~ 184 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLIS-------------SVTSEELSALPALRSLDLSRNLIS------EIPKPSFPAKVNIKKLNLASNR 184 (873)
T ss_pred ccceeEEeeeccccc-------------cccHHHHHhHhhhhhhhhhhchhh------cccCCCCCCCCCceEEeecccc
Confidence 456788888888332 222466788899999999966544 333 345556789999999999
Q ss_pred Ccccc-chhhcCCCCCcEEeccCCCCCcccc-hhhhcccCCCeeeecCcccccC-CccCCCCCCCCcCCceeeCcccCcC
Q 003367 503 AIYEL-PEALCDLCNLQTLDVSNCGNLHALP-QGIAKLINLRHLINEGTPLLYL-PKGLERLTCLRTLSEFTVSDIENVS 579 (826)
Q Consensus 503 ~~~~l-p~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~~~~~~~~~~~~ 579 (826)
++.+ -..|.+|.+|.+|.|++|+ +..+| ..|.+|++|+.|+|..|.+..+ -..|..|.+|+.|.+..+....-
T Consensus 185 -It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL-- 260 (873)
T KOG4194|consen 185 -ITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKL-- 260 (873)
T ss_pred -ccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccc--
Confidence 5544 4668899999999999999 55555 5666799999999999998865 34588999999999888766332
Q ss_pred cccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEE
Q 003367 580 KAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTI 659 (826)
Q Consensus 580 ~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L 659 (826)
..+.+-.+.++..+. +... .+.......+-++..|+.|++++|.+.... .+.++.+++|+.|+|
T Consensus 261 ~DG~Fy~l~kme~l~--L~~N------~l~~vn~g~lfgLt~L~~L~lS~NaI~rih--------~d~WsftqkL~~LdL 324 (873)
T KOG4194|consen 261 DDGAFYGLEKMEHLN--LETN------RLQAVNEGWLFGLTSLEQLDLSYNAIQRIH--------IDSWSFTQKLKELDL 324 (873)
T ss_pred cCcceeeecccceee--cccc------hhhhhhcccccccchhhhhccchhhhheee--------cchhhhcccceeEec
Confidence 333333343333331 1111 122333445677889999999999865443 345677899999999
Q ss_pred eccCCCCCCCCcccCccCCcEEEEecCCCCCCCC-CCCCCCccceeeccccccceEeCcccccCCCCccccCccCcCCCc
Q 003367 660 CDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP-SLGRLPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPK 738 (826)
Q Consensus 660 ~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (826)
++|.++.+.+..|..++.|+.|+|+.|.+...-. .+..+++|+.|+|+++..--.+.. + .....++++
T Consensus 325 s~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED---a--------a~~f~gl~~ 393 (873)
T KOG4194|consen 325 SSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED---A--------AVAFNGLPS 393 (873)
T ss_pred cccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec---c--------hhhhccchh
Confidence 9999999989999999999999999998764333 688899999999986542111111 1 112347999
Q ss_pred cceeeccccccccccccccccccCcCCCCccceeeecCCCCCCCCCCCCcccCCcceEEEcc
Q 003367 739 LKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKLKALPDHLLLTTKMNELTMNW 800 (826)
Q Consensus 739 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 800 (826)
|+.|.|.+| +++.++. ..+..+++|++|+|.+|..-..=|..+.++ .|++|.+..
T Consensus 394 LrkL~l~gN-qlk~I~k-----rAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 394 LRKLRLTGN-QLKSIPK-----RAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred hhheeecCc-eeeecch-----hhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 999999999 7888765 567789999999999977555456667776 899998753
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=1.3e-21 Score=202.53 Aligned_cols=280 Identities=21% Similarity=0.244 Sum_probs=180.0
Q ss_pred ccCCCCccEEEccCCCCccccc-hhhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCcccccCCcc-CCCCCCC
Q 003367 487 IKKLKHLRYLNLSNNDAIYELP-EALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPLLYLPKG-LERLTCL 564 (826)
Q Consensus 487 i~~l~~L~~L~Ls~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L 564 (826)
+..++.||.||||.|. +.++| .+|..-.++++|+|++|++...-...|..+.+|..|.|+.|.++.+|.- |.+|+.|
T Consensus 145 L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L 223 (873)
T KOG4194|consen 145 LSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKL 223 (873)
T ss_pred HHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchh
Confidence 4445555666666655 44444 2344445666666666664444445566666666666666666666643 4556666
Q ss_pred CcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCCcCCceeeEeecCCCcccccchHHH
Q 003367 565 RTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNEV 644 (826)
Q Consensus 565 ~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 644 (826)
+.|++..+.+ .+.....+..|..|..+. +.-. ++.......+-.+.+++.|+|+.|.+....
T Consensus 224 ~~LdLnrN~i--rive~ltFqgL~Sl~nlk--lqrN------~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn-------- 285 (873)
T KOG4194|consen 224 ESLDLNRNRI--RIVEGLTFQGLPSLQNLK--LQRN------DISKLDDGAFYGLEKMEHLNLETNRLQAVN-------- 285 (873)
T ss_pred hhhhccccce--eeehhhhhcCchhhhhhh--hhhc------CcccccCcceeeecccceeecccchhhhhh--------
Confidence 6666655544 222233333344333321 1111 111122234556777888888888765433
Q ss_pred hhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC-CCCCCCccceeeccccccceEeCcccccCC
Q 003367 645 LEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP-SLGRLPSLESLVVEALSSVRRVGNEFLGIE 723 (826)
Q Consensus 645 ~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 723 (826)
-.++-.+..|+.|+|++|.+..+.++.....++|+.|+|++|.+...-+ .+..|..|+.|.|+.+. +..+...
T Consensus 286 ~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~----- 359 (873)
T KOG4194|consen 286 EGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEG----- 359 (873)
T ss_pred cccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHhh-----
Confidence 2355677899999999999998888888889999999999999876555 78888999999998544 2222111
Q ss_pred CCccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCCCCCCCCCC-CCcccCCcceEEEcccc
Q 003367 724 SDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKLKALPD-HLLLTTKMNELTMNWCS 802 (826)
Q Consensus 724 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~ 802 (826)
.+.++.+|++|+|++|.. . |.. -.....+..|++|++|.+.+ +.++.+|. .+..+..|++|++.+++
T Consensus 360 --------af~~lssL~~LdLr~N~l-s-~~I-EDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 360 --------AFVGLSSLHKLDLRSNEL-S-WCI-EDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred --------HHHHhhhhhhhcCcCCeE-E-EEE-ecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCc
Confidence 123678999999998842 1 221 01123456799999999999 56898986 46678999999999987
Q ss_pred c
Q 003367 803 V 803 (826)
Q Consensus 803 ~ 803 (826)
.
T Consensus 428 i 428 (873)
T KOG4194|consen 428 I 428 (873)
T ss_pred c
Confidence 4
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.82 E-value=1.1e-19 Score=222.64 Aligned_cols=302 Identities=20% Similarity=0.282 Sum_probs=178.2
Q ss_pred hhhhccCCCCcEEecccccccc-ccccccccccccC-----------------------CCCccEEEccCCCCccccchh
Q 003367 455 PSLFDRLTCLRTLCLRCHERHF-CLSIARLPRNIKK-----------------------LKHLRYLNLSNNDAIYELPEA 510 (826)
Q Consensus 455 ~~~~~~l~~Lr~L~L~~~~~~~-~~~~~~lp~~i~~-----------------------l~~L~~L~Ls~~~~~~~lp~~ 510 (826)
+..|.+|++|+.|.+..+.... ......+|..+.. +.+|++|++++|. +..+|..
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~-l~~L~~~ 629 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSK-LEKLWDG 629 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcc-ccccccc
Confidence 5679999999999886432110 0001123433333 3455555555554 4455555
Q ss_pred hcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCc-ccccCCccCCCCCCCCcCCceeeCcccCcCcccCcccccc
Q 003367 511 LCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGT-PLLYLPKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQN 589 (826)
Q Consensus 511 i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~ 589 (826)
+..+++|+.|+|++|..++.+| .++.+++|++|++++| .+..+|..++++++|+.|++.+|..+..++....+..|..
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~ 708 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYR 708 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCE
Confidence 5555555555555554445554 2555555555555533 3445555555555555555555444333332222222222
Q ss_pred cccCCCceEEcccCCCCChhhhhhhhccCCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCC--
Q 003367 590 LNHLQGSLVLTALGNVTDVGEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKII-- 667 (826)
Q Consensus 590 L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~-- 667 (826)
|+ +.+...+.... ....+|+.|.++.+.+.. ++..+ .+++|++|.+.++....+
T Consensus 709 L~-------Lsgc~~L~~~p-------~~~~nL~~L~L~~n~i~~---------lP~~~-~l~~L~~L~l~~~~~~~l~~ 764 (1153)
T PLN03210 709 LN-------LSGCSRLKSFP-------DISTNISWLDLDETAIEE---------FPSNL-RLENLDELILCEMKSEKLWE 764 (1153)
T ss_pred Ee-------CCCCCCccccc-------cccCCcCeeecCCCcccc---------ccccc-cccccccccccccchhhccc
Confidence 21 11111110000 012344455554443221 11111 345666666665432211
Q ss_pred -----CCCcccCccCCcEEEEecCCCCCCCC-CCCCCCccceeeccccccceEeCcccccCCCCccccCccCcCCCccce
Q 003367 668 -----SPSWLMSLTELRMLNLQRCGKCEQLP-SLGRLPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKF 741 (826)
Q Consensus 668 -----~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 741 (826)
.|.....+++|+.|+|++|...+.+| .++++++|+.|+|++|..++.++... .+++|+.
T Consensus 765 ~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~---------------~L~sL~~ 829 (1153)
T PLN03210 765 RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI---------------NLESLES 829 (1153)
T ss_pred cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC---------------CccccCE
Confidence 12222335789999999998888888 78999999999999998877655321 4789999
Q ss_pred eeccccccccccccccccccCcCCCCccceeeecCCCCCCCCCCCCcccCCcceEEEccccchHHH
Q 003367 742 LEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKLKALPDHLLLTTKMNELTMNWCSVLKER 807 (826)
Q Consensus 742 L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~ 807 (826)
|++++|..+..++. ..++|+.|+|++| .++.+|..+..+++|+.|++++|++++..
T Consensus 830 L~Ls~c~~L~~~p~---------~~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l 885 (1153)
T PLN03210 830 LDLSGCSRLRTFPD---------ISTNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRV 885 (1153)
T ss_pred EECCCCCccccccc---------cccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCcc
Confidence 99999988776643 3578999999995 68899999999999999999999998765
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=6.2e-22 Score=206.04 Aligned_cols=304 Identities=19% Similarity=0.208 Sum_probs=224.9
Q ss_pred chhhhccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCc-cccchhhcCCCCCcEEeccCCCCCcccc
Q 003367 454 LPSLFDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAI-YELPEALCDLCNLQTLDVSNCGNLHALP 532 (826)
Q Consensus 454 ~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~-~~lp~~i~~L~~L~~L~L~~~~~~~~lp 532 (826)
+|..++.+.+|+.|.++ .| .+..+-..+..|+.||.+.+++|++- .-+|..|..|..|.+||||+|+ +.+.|
T Consensus 47 vPeEL~~lqkLEHLs~~-----HN-~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP 119 (1255)
T KOG0444|consen 47 VPEELSRLQKLEHLSMA-----HN-QLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVP 119 (1255)
T ss_pred ChHHHHHHhhhhhhhhh-----hh-hhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhh-hhhcc
Confidence 47888888888888888 55 55556667788888999999888732 3578888899999999999988 78889
Q ss_pred hhhhcccCCCeeeecCcccccCCcc-CCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhh
Q 003367 533 QGIAKLINLRHLINEGTPLLYLPKG-LERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEA 611 (826)
Q Consensus 533 ~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~ 611 (826)
..+.+-+++-.|++|+|+|..+|.. +-+|+.|-.|+++.+..-...|....+..|+.|..-.+ .+...
T Consensus 120 ~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~N-----------PL~hf 188 (1255)
T KOG0444|consen 120 TNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNN-----------PLNHF 188 (1255)
T ss_pred hhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCC-----------hhhHH
Confidence 9999999999999999999999876 67888888888887765221122222333332221110 12223
Q ss_pred hhhhccCCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCC
Q 003367 612 KSAKLESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQ 691 (826)
Q Consensus 612 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~ 691 (826)
....+.++.+|+.|.++...-+ ...++.++..+.+|..++++.|.+... |+.+-.+.+|+.|+||+|.+++.
T Consensus 189 QLrQLPsmtsL~vLhms~TqRT-------l~N~Ptsld~l~NL~dvDlS~N~Lp~v-Pecly~l~~LrrLNLS~N~iteL 260 (1255)
T KOG0444|consen 189 QLRQLPSMTSLSVLHMSNTQRT-------LDNIPTSLDDLHNLRDVDLSENNLPIV-PECLYKLRNLRRLNLSGNKITEL 260 (1255)
T ss_pred HHhcCccchhhhhhhcccccch-------hhcCCCchhhhhhhhhccccccCCCcc-hHHHhhhhhhheeccCcCceeee
Confidence 3445667778888888766522 234566777788999999999998887 99999999999999999998764
Q ss_pred CCCCCCCCccceeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCCCccce
Q 003367 692 LPSLGRLPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHR 771 (826)
Q Consensus 692 l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~ 771 (826)
--..+...+|++|+++++. |..++ .....+++|+.|.+.+|. +.--. .|.+++.+.+|+.
T Consensus 261 ~~~~~~W~~lEtLNlSrNQ-Lt~LP--------------~avcKL~kL~kLy~n~Nk-L~FeG----iPSGIGKL~~Lev 320 (1255)
T KOG0444|consen 261 NMTEGEWENLETLNLSRNQ-LTVLP--------------DAVCKLTKLTKLYANNNK-LTFEG----IPSGIGKLIQLEV 320 (1255)
T ss_pred eccHHHHhhhhhhccccch-hccch--------------HHHhhhHHHHHHHhccCc-ccccC----CccchhhhhhhHH
Confidence 4456677889999998543 22222 223468899999988873 33221 2668889999999
Q ss_pred eeecCCCCCCCCCCCCcccCCcceEEEccccch
Q 003367 772 LKLDGCHKLKALPDHLLLTTKMNELTMNWCSVL 804 (826)
Q Consensus 772 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l 804 (826)
+..++ ++++-+|.++..|..|+.|.++.+.-+
T Consensus 321 f~aan-N~LElVPEglcRC~kL~kL~L~~NrLi 352 (1255)
T KOG0444|consen 321 FHAAN-NKLELVPEGLCRCVKLQKLKLDHNRLI 352 (1255)
T ss_pred HHhhc-cccccCchhhhhhHHHHHhccccccee
Confidence 99998 679999999999999999999887644
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.77 E-value=2.3e-21 Score=192.27 Aligned_cols=315 Identities=22% Similarity=0.212 Sum_probs=201.2
Q ss_pred hchhhhccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhc-CCCCCcEEeccCCCCCccc
Q 003367 453 ALPSLFDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALC-DLCNLQTLDVSNCGNLHAL 531 (826)
Q Consensus 453 ~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~-~L~~L~~L~L~~~~~~~~l 531 (826)
.+|+.++.+..|..|+|. .+ .+..+| .|.++..|+.|.+..|. +..+|...+ +|.+|.+|||+.|+ +++.
T Consensus 197 tlP~~lg~l~~L~~LyL~-----~N-ki~~lP-ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdNk-lke~ 267 (565)
T KOG0472|consen 197 TLPPELGGLESLELLYLR-----RN-KIRFLP-EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDNK-LKEV 267 (565)
T ss_pred cCChhhcchhhhHHHHhh-----hc-ccccCC-CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeeccccc-cccC
Confidence 357888999999999998 44 666777 78899999999999988 888998776 89999999999998 8889
Q ss_pred chhhhcccCCCeeeecCcccccCCccCCCCCCCCcCCceeeCcccC---cCcccCcccccccccCCCceEEcccCCCCC-
Q 003367 532 PQGIAKLINLRHLINEGTPLLYLPKGLERLTCLRTLSEFTVSDIEN---VSKAGSLQCLQNLNHLQGSLVLTALGNVTD- 607 (826)
Q Consensus 532 p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~---~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~- 607 (826)
|+++..|.+|.+||+++|.++.+|..+|+| .|+.|-+.++..-+- +...+.-.-|+.| +....-.++..-..
T Consensus 268 Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyL---rs~~~~dglS~se~~ 343 (565)
T KOG0472|consen 268 PDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYL---RSKIKDDGLSQSEGG 343 (565)
T ss_pred chHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHH---HHhhccCCCCCCccc
Confidence 999999999999999999999999999999 888887776643110 0011111111111 11111111111000
Q ss_pred ------hhhhhhhhccCCCcCCceeeEeecCCCcccc-----------------cchHHHhhcCCCCCCcCeEEEeccCC
Q 003367 608 ------VGEAKSAKLESKKHLVCLRLEFIKLGRVELV-----------------DKDNEVLEALQPSPDLEKLTICDYKS 664 (826)
Q Consensus 608 ------~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~-----------------~~~~~~~~~l~~~~~L~~L~L~~~~~ 664 (826)
...........+.+.+.|.++.-.++..+.. ....+.+..+..+..+.+.-+..|+.
T Consensus 344 ~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~ 423 (565)
T KOG0472|consen 344 TETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNK 423 (565)
T ss_pred ccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCc
Confidence 0000111112223344444444333322200 01122233333333333333333444
Q ss_pred CCCCCCcccCccCCcEEEEecCCCCCCCC-CCCCCCccceeeccccccceEeCcccccCCCCccccCccCcCCCccceee
Q 003367 665 KIISPSWLMSLTELRMLNLQRCGKCEQLP-SLGRLPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLE 743 (826)
Q Consensus 665 ~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 743 (826)
.+++|..++.+++|..|+|++|.+. ++| .++.+..|+.|+++.+. +...++-.. .+..|+.+-
T Consensus 424 isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~Nr-Fr~lP~~~y--------------~lq~lEtll 487 (565)
T KOG0472|consen 424 ISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNR-FRMLPECLY--------------ELQTLETLL 487 (565)
T ss_pred cccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccc-cccchHHHh--------------hHHHHHHHH
Confidence 4555778889999999999988664 566 78888889999998432 222222111 122344444
Q ss_pred ccccccccccccccccccCcCCCCccceeeecCCCCCCCCCCCCcccCCcceEEEccccc
Q 003367 744 FRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKLKALPDHLLLTTKMNELTMNWCSV 803 (826)
Q Consensus 744 l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 803 (826)
.+++ .+..++. .++..|.+|.+|++.+ +.+..+|..++++++|++|+++|+|-
T Consensus 488 as~n-qi~~vd~-----~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 488 ASNN-QIGSVDP-----SGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred hccc-cccccCh-----HHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCcc
Confidence 4444 5666543 4678999999999998 56889999999999999999999984
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.70 E-value=9.9e-20 Score=180.76 Aligned_cols=266 Identities=26% Similarity=0.293 Sum_probs=178.7
Q ss_pred CCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccC
Q 003367 461 LTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLIN 540 (826)
Q Consensus 461 l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~ 540 (826)
-..|..|+++ .+ .+..+-+.+.++..|.+|++++|. +.++|++++.+..++.|+.+.|. +..+|..++.+.+
T Consensus 44 qv~l~~lils-----~N-~l~~l~~dl~nL~~l~vl~~~~n~-l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s~~~ 115 (565)
T KOG0472|consen 44 QVDLQKLILS-----HN-DLEVLREDLKNLACLTVLNVHDNK-LSQLPAAIGELEALKSLNVSHNK-LSELPEQIGSLIS 115 (565)
T ss_pred hcchhhhhhc-----cC-chhhccHhhhcccceeEEEeccch-hhhCCHHHHHHHHHHHhhcccch-HhhccHHHhhhhh
Confidence 3445556665 33 344444556666667777777766 66666667777777777777666 5566666777777
Q ss_pred CCeeeecCcccccCCccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCC
Q 003367 541 LRHLINEGTPLLYLPKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKK 620 (826)
Q Consensus 541 L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~ 620 (826)
|++|+++.|.+..+|++++.+-.|..|+..++......+... ++.
T Consensus 116 l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~-----------------------------------~~~ 160 (565)
T KOG0472|consen 116 LVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMV-----------------------------------NLS 160 (565)
T ss_pred hhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHH-----------------------------------HHH
Confidence 777777766666667666666666666655554422111111 111
Q ss_pred cCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCCCCCCCCc
Q 003367 621 HLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLPSLGRLPS 700 (826)
Q Consensus 621 ~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~ 700 (826)
+|..+.+.++.+.. .++..-.+..|++|+...|.+..+ |..++.+.+|..|+|..|++. .+|.|+++..
T Consensus 161 ~l~~l~~~~n~l~~---------l~~~~i~m~~L~~ld~~~N~L~tl-P~~lg~l~~L~~LyL~~Nki~-~lPef~gcs~ 229 (565)
T KOG0472|consen 161 KLSKLDLEGNKLKA---------LPENHIAMKRLKHLDCNSNLLETL-PPELGGLESLELLYLRRNKIR-FLPEFPGCSL 229 (565)
T ss_pred HHHHhhccccchhh---------CCHHHHHHHHHHhcccchhhhhcC-ChhhcchhhhHHHHhhhcccc-cCCCCCccHH
Confidence 12222222222111 111112256788888888888877 888999999999999999875 6789999999
Q ss_pred cceeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCCCCC
Q 003367 701 LESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKL 780 (826)
Q Consensus 701 L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 780 (826)
|++|+++.+. ++.++.+.. ..+++|..|++.+| .+++.+ +.+.-+.+|+.|++++ +-+
T Consensus 230 L~Elh~g~N~-i~~lpae~~-------------~~L~~l~vLDLRdN-klke~P------de~clLrsL~rLDlSN-N~i 287 (565)
T KOG0472|consen 230 LKELHVGENQ-IEMLPAEHL-------------KHLNSLLVLDLRDN-KLKEVP------DEICLLRSLERLDLSN-NDI 287 (565)
T ss_pred HHHHHhcccH-HHhhHHHHh-------------cccccceeeecccc-ccccCc------hHHHHhhhhhhhcccC-Ccc
Confidence 9999997433 333332221 26899999999999 677764 4666789999999998 568
Q ss_pred CCCCCCCcccCCcceEEEccccc
Q 003367 781 KALPDHLLLTTKMNELTMNWCSV 803 (826)
Q Consensus 781 ~~lp~~l~~l~~L~~L~l~~c~~ 803 (826)
+.+|..++++ .|+.|.+.|+|-
T Consensus 288 s~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 288 SSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred ccCCcccccc-eeeehhhcCCch
Confidence 9999999999 999999999984
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.65 E-value=4.2e-18 Score=186.46 Aligned_cols=325 Identities=24% Similarity=0.299 Sum_probs=199.6
Q ss_pred hccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhc
Q 003367 458 FDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAK 537 (826)
Q Consensus 458 ~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~ 537 (826)
..+.-+|++||++ .+ .+...|..+..+.+|+.|+++.|. +..+|.+++++.+|++|+|.+|. +..+|.++..
T Consensus 41 ~~~~v~L~~l~ls-----nn-~~~~fp~~it~l~~L~~ln~s~n~-i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~ 112 (1081)
T KOG0618|consen 41 VEKRVKLKSLDLS-----NN-QISSFPIQITLLSHLRQLNLSRNY-IRSVPSSCSNMRNLQYLNLKNNR-LQSLPASISE 112 (1081)
T ss_pred hhheeeeEEeecc-----cc-ccccCCchhhhHHHHhhcccchhh-HhhCchhhhhhhcchhheeccch-hhcCchhHHh
Confidence 3445559999999 55 677889999999999999999998 99999999999999999999887 8899999999
Q ss_pred ccCCCeeeecCcccccCCccCCCCCCCCcCCceeeCcccCcCcccCccccc-ccccCCCceEE--cccCC---CCChhhh
Q 003367 538 LINLRHLINEGTPLLYLPKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQ-NLNHLQGSLVL--TALGN---VTDVGEA 611 (826)
Q Consensus 538 L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~-~L~~L~~~l~~--~~l~~---~~~~~~~ 611 (826)
+++|++|+++.|.+..+|.-+..++.+.++...++..+...+.. .++.+. .++.+.+.+.. ..+.. +.... .
T Consensus 113 lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~-~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~-~ 190 (1081)
T KOG0618|consen 113 LKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQT-SIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNE-M 190 (1081)
T ss_pred hhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccc-cchhhhhhhhhcccchhcchhhhheeeecccch-h
Confidence 99999999999999999998888888888877766222111111 111111 12222222111 11111 11111 1
Q ss_pred hhhhccCCCcCCceeeEeecCCCccccc----------chHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEE
Q 003367 612 KSAKLESKKHLVCLRLEFIKLGRVELVD----------KDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRML 681 (826)
Q Consensus 612 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~----------~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L 681 (826)
....+.++.+|+.+....+.++.....+ ........-..+.+|++++++.|.+..+ |+|++.+.+|+.|
T Consensus 191 ~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~l-p~wi~~~~nle~l 269 (1081)
T KOG0618|consen 191 EVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNL-PEWIGACANLEAL 269 (1081)
T ss_pred hhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcc-hHHHHhcccceEe
Confidence 1344555555555555444443222111 0011111122356899999999999998 7999999999999
Q ss_pred EEecCCCCC----------------------CCC-CCCCCCccceeeccccccceEeCcccccCCCC------------c
Q 003367 682 NLQRCGKCE----------------------QLP-SLGRLPSLESLVVEALSSVRRVGNEFLGIESD------------D 726 (826)
Q Consensus 682 ~L~~~~~~~----------------------~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~------------~ 726 (826)
+..+|.++. .+| .+.++.+|++|+|..+. +..++..+...... .
T Consensus 270 ~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~ 348 (1081)
T KOG0618|consen 270 NANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLS 348 (1081)
T ss_pred cccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhcccc
Confidence 888886532 123 45568888888887544 22222222111110 0
Q ss_pred cccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCCCCCCCCCCC-CcccCCcceEEEccc
Q 003367 727 ISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKLKALPDH-LLLTTKMNELTMNWC 801 (826)
Q Consensus 727 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c 801 (826)
...+.....++.|+.|.+.+|. +.+-++ ..+.++++|+.|+|++ +.+.++|.. +.++..|++|+++|+
T Consensus 349 ~lp~~~e~~~~~Lq~LylanN~-Ltd~c~-----p~l~~~~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSGN 417 (1081)
T KOG0618|consen 349 TLPSYEENNHAALQELYLANNH-LTDSCF-----PVLVNFKHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSGN 417 (1081)
T ss_pred ccccccchhhHHHHHHHHhcCc-ccccch-----hhhccccceeeeeecc-cccccCCHHHHhchHHhHHHhcccc
Confidence 0011122345556666666652 332221 1344566666666666 346666653 345666666666666
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.60 E-value=6e-15 Score=167.56 Aligned_cols=93 Identities=27% Similarity=0.207 Sum_probs=65.8
Q ss_pred CCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCC
Q 003367 462 TCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINL 541 (826)
Q Consensus 462 ~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L 541 (826)
++|+.|++. .| .+..+|.. +++|++|+|++|. ++.+|.. .++|+.|++++|. +..+|... .+|
T Consensus 222 ~~L~~L~L~-----~N-~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~Ls~N~-L~~Lp~lp---~~L 284 (788)
T PRK15387 222 AHITTLVIP-----DN-NLTSLPAL---PPELRTLEVSGNQ-LTSLPVL---PPGLLELSIFSNP-LTHLPALP---SGL 284 (788)
T ss_pred cCCCEEEcc-----CC-cCCCCCCC---CCCCcEEEecCCc-cCcccCc---ccccceeeccCCc-hhhhhhch---hhc
Confidence 378888888 44 55566642 5788888888887 6677753 4678888888887 55666532 567
Q ss_pred CeeeecCcccccCCccCCCCCCCCcCCceeeCc
Q 003367 542 RHLINEGTPLLYLPKGLERLTCLRTLSEFTVSD 574 (826)
Q Consensus 542 ~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~ 574 (826)
+.|++++|.+..+|.. +++|+.|++.+|..
T Consensus 285 ~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L 314 (788)
T PRK15387 285 CKLWIFGNQLTSLPVL---PPGLQELSVSDNQL 314 (788)
T ss_pred CEEECcCCcccccccc---ccccceeECCCCcc
Confidence 7888888888888763 35677777766644
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.54 E-value=2.2e-16 Score=173.24 Aligned_cols=248 Identities=27% Similarity=0.313 Sum_probs=168.5
Q ss_pred CCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCcccccCCccCCCCCCCCcCCc
Q 003367 490 LKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPLLYLPKGLERLTCLRTLSE 569 (826)
Q Consensus 490 l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~ 569 (826)
-.+|+|+++++|. ...+|+.++.+.+|+.|++.+|. +..+|..+..+++|+.|.+..|.+..+|...+.+++|++|++
T Consensus 240 p~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 240 PLNLQYLDISHNN-LSNLPEWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred cccceeeecchhh-hhcchHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeee
Confidence 3579999999998 88899999999999999999998 588999999999999999999999999999999999999998
Q ss_pred eeeCcccCcCcccCccccc-ccccCCCceEEcccCCCCChhhhhhhhccCCCcCCceeeEeecCCCcccccchHHHhhcC
Q 003367 570 FTVSDIENVSKAGSLQCLQ-NLNHLQGSLVLTALGNVTDVGEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNEVLEAL 648 (826)
Q Consensus 570 ~~~~~~~~~~~~~~l~~L~-~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l 648 (826)
..+....- +. ..+..+. .|+.+.... ..+.... ...-..+..|+.|++..|.+++. .++.+
T Consensus 318 ~~N~L~~l-p~-~~l~v~~~~l~~ln~s~--n~l~~lp------~~~e~~~~~Lq~LylanN~Ltd~--------c~p~l 379 (1081)
T KOG0618|consen 318 QSNNLPSL-PD-NFLAVLNASLNTLNVSS--NKLSTLP------SYEENNHAALQELYLANNHLTDS--------CFPVL 379 (1081)
T ss_pred hhcccccc-ch-HHHhhhhHHHHHHhhhh--ccccccc------cccchhhHHHHHHHHhcCccccc--------chhhh
Confidence 88765322 11 1111111 122121100 0000000 11112345566777777765433 34556
Q ss_pred CCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC-CCCCCCccceeeccccccceEeCcccccCCCCcc
Q 003367 649 QPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP-SLGRLPSLESLVVEALSSVRRVGNEFLGIESDDI 727 (826)
Q Consensus 649 ~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 727 (826)
..+++|+.|+|++|.+..++-..+.++..|+.|+||||++. .+| .+..++.|++|...++. +..++ +
T Consensus 380 ~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~-l~~fP-e--------- 447 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQ-LLSFP-E--------- 447 (1081)
T ss_pred ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCc-eeech-h---------
Confidence 67788899999998888885566778888889999988875 444 67778888888776433 22222 1
Q ss_pred ccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCCCCC
Q 003367 728 SLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKL 780 (826)
Q Consensus 728 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 780 (826)
...++.|+.++++.| +|..... +... ..|+|+.|++++|..+
T Consensus 448 -----~~~l~qL~~lDlS~N-~L~~~~l----~~~~-p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 448 -----LAQLPQLKVLDLSCN-NLSEVTL----PEAL-PSPNLKYLDLSGNTRL 489 (1081)
T ss_pred -----hhhcCcceEEecccc-hhhhhhh----hhhC-CCcccceeeccCCccc
Confidence 236788888888877 5555433 2222 1278888888887753
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.47 E-value=7.3e-14 Score=160.02 Aligned_cols=227 Identities=20% Similarity=0.255 Sum_probs=131.0
Q ss_pred CCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCC
Q 003367 462 TCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINL 541 (826)
Q Consensus 462 ~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L 541 (826)
+.|+.|+|+ +| .+..+|..+. .+|++|++++|. +..+|..+. .+|+.|+|++|. +..+|..+. .+|
T Consensus 199 ~~L~~L~Ls-----~N-~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~--s~L 264 (754)
T PRK15370 199 EQITTLILD-----NN-ELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSINR-ITELPERLP--SAL 264 (754)
T ss_pred cCCcEEEec-----CC-CCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcCCc-cCcCChhHh--CCC
Confidence 468888888 44 5566776554 578888888887 667786554 478888888887 457777664 478
Q ss_pred CeeeecCcccccCCccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCCc
Q 003367 542 RHLINEGTPLLYLPKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKH 621 (826)
Q Consensus 542 ~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~ 621 (826)
+.|++++|++..+|..+. .+|+.|++.+|... .++. . + ...
T Consensus 265 ~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~---------------~-------------------l--p~s 305 (754)
T PRK15370 265 QSLDLFHNKISCLPENLP--EELRYLSVYDNSIR-TLPA---------------H-------------------L--PSG 305 (754)
T ss_pred CEEECcCCccCccccccC--CCCcEEECCCCccc-cCcc---------------c-------------------c--hhh
Confidence 888888888888877654 46777766554321 0000 0 0 013
Q ss_pred CCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC-CCCCCCc
Q 003367 622 LVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP-SLGRLPS 700 (826)
Q Consensus 622 L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~l~~ 700 (826)
|+.|+++.|.+... +.. .+++|+.|++++|.++.+ |..+. ++|+.|+|++|.+.. +| .+ .++
T Consensus 306 L~~L~Ls~N~Lt~L---------P~~--l~~sL~~L~Ls~N~Lt~L-P~~l~--~sL~~L~Ls~N~L~~-LP~~l--p~~ 368 (754)
T PRK15370 306 ITHLNVQSNSLTAL---------PET--LPPGLKTLEAGENALTSL-PASLP--PELQVLDVSKNQITV-LPETL--PPT 368 (754)
T ss_pred HHHHHhcCCccccC---------Ccc--ccccceeccccCCccccC-Chhhc--CcccEEECCCCCCCc-CChhh--cCC
Confidence 44445554443211 111 125677777777777765 55443 577777777776653 44 22 256
Q ss_pred cceeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCCC
Q 003367 701 LESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCH 778 (826)
Q Consensus 701 L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 778 (826)
|+.|+|++|. +..++.. ..++|+.|++++| .+..++..+ +.....++++..|++.+|+
T Consensus 369 L~~LdLs~N~-Lt~LP~~----------------l~~sL~~LdLs~N-~L~~LP~sl--~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 369 ITTLDVSRNA-LTNLPEN----------------LPAALQIMQASRN-NLVRLPESL--PHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred cCEEECCCCc-CCCCCHh----------------HHHHHHHHhhccC-CcccCchhH--HHHhhcCCCccEEEeeCCC
Confidence 7777776543 2211111 1235666666666 344433211 1112234666667776655
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=9.5e-16 Score=134.92 Aligned_cols=166 Identities=26% Similarity=0.289 Sum_probs=122.3
Q ss_pred ccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCcccccCCccCCCCCCCCc
Q 003367 487 IKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPLLYLPKGLERLTCLRT 566 (826)
Q Consensus 487 i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~ 566 (826)
+..+.+.+.|-||+|. ++.+|+.|..|.+|+.|++++|+ +..+|..+..|++|++|+++-|.+..+|.+||.++.|+.
T Consensus 29 Lf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEV 106 (264)
T ss_pred ccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhh
Confidence 4567788888999998 88888889999999999999988 788999999999999999999999999999999999999
Q ss_pred CCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCCcCCceeeEeecCCCcccccchHHHhh
Q 003367 567 LSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNEVLE 646 (826)
Q Consensus 567 L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 646 (826)
|++.+++..+.. |.| .+-.+..|+-|+++.++ .+-.+.
T Consensus 107 ldltynnl~e~~--------------lpg-------------------nff~m~tlralyl~dnd---------fe~lp~ 144 (264)
T KOG0617|consen 107 LDLTYNNLNENS--------------LPG-------------------NFFYMTTLRALYLGDND---------FEILPP 144 (264)
T ss_pred hhcccccccccc--------------CCc-------------------chhHHHHHHHHHhcCCC---------cccCCh
Confidence 988877653321 110 01112223334444433 223445
Q ss_pred cCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCCCCCC
Q 003367 647 ALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLPSLGR 697 (826)
Q Consensus 647 ~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~ 697 (826)
.++.+.+|+.|.+..|.+..+ |..++.++.|+.|++.+|.++...|.+++
T Consensus 145 dvg~lt~lqil~lrdndll~l-pkeig~lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 145 DVGKLTNLQILSLRDNDLLSL-PKEIGDLTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred hhhhhcceeEEeeccCchhhC-cHHHHHHHHHHHHhcccceeeecChhhhh
Confidence 566677888888888887777 88888888888888888877655555544
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.44 E-value=5.7e-13 Score=151.62 Aligned_cols=257 Identities=21% Similarity=0.205 Sum_probs=176.9
Q ss_pred CCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCC
Q 003367 462 TCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINL 541 (826)
Q Consensus 462 ~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L 541 (826)
..-.+|+|+ .+ .+..+|..+. .+|+.|++++|. ++.+|. .+++|++|++++|. +..+|.. .++|
T Consensus 201 ~~~~~LdLs-----~~-~LtsLP~~l~--~~L~~L~L~~N~-Lt~LP~---lp~~Lk~LdLs~N~-LtsLP~l---p~sL 264 (788)
T PRK15387 201 NGNAVLNVG-----ES-GLTTLPDCLP--AHITTLVIPDNN-LTSLPA---LPPELRTLEVSGNQ-LTSLPVL---PPGL 264 (788)
T ss_pred CCCcEEEcC-----CC-CCCcCCcchh--cCCCEEEccCCc-CCCCCC---CCCCCcEEEecCCc-cCcccCc---cccc
Confidence 456789998 55 6778898776 489999999998 888886 35899999999998 5567753 4689
Q ss_pred CeeeecCcccccCCccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCCc
Q 003367 542 RHLINEGTPLLYLPKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKH 621 (826)
Q Consensus 542 ~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~ 621 (826)
+.|++++|.+..+|... ++|+.|++.+|... .++. .+..|..|+.-.+ .+..+.. ....
T Consensus 265 ~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~Lt-~LP~--~p~~L~~LdLS~N-----~L~~Lp~----------lp~~ 323 (788)
T PRK15387 265 LELSIFSNPLTHLPALP---SGLCKLWIFGNQLT-SLPV--LPPGLQELSVSDN-----QLASLPA----------LPSE 323 (788)
T ss_pred ceeeccCCchhhhhhch---hhcCEEECcCCccc-cccc--cccccceeECCCC-----ccccCCC----------Cccc
Confidence 99999999999888644 45667777666442 2211 1222333321111 1111110 1134
Q ss_pred CCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCCCCCCCCcc
Q 003367 622 LVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLPSLGRLPSL 701 (826)
Q Consensus 622 L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L 701 (826)
|..|.++.|.++..+ . .+++|+.|+|++|.+..+ |.. .++|+.|++++|.+.. +|.+ +++|
T Consensus 324 L~~L~Ls~N~L~~LP----------~--lp~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~~-LP~l--~~~L 384 (788)
T PRK15387 324 LCKLWAYNNQLTSLP----------T--LPSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLTS-LPAL--PSGL 384 (788)
T ss_pred ccccccccCcccccc----------c--cccccceEecCCCccCCC-CCC---Ccccceehhhcccccc-Cccc--cccc
Confidence 666777666643211 1 135899999999999987 543 4678889999998764 6643 3578
Q ss_pred ceeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCCCCCC
Q 003367 702 ESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKLK 781 (826)
Q Consensus 702 ~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 781 (826)
+.|+++++. +.+... .+++|+.|++++| .+..++. .+.+|+.|++++| .++
T Consensus 385 ~~LdLs~N~--------Lt~LP~----------l~s~L~~LdLS~N-~LssIP~---------l~~~L~~L~Ls~N-qLt 435 (788)
T PRK15387 385 KELIVSGNR--------LTSLPV----------LPSELKELMVSGN-RLTSLPM---------LPSGLLSLSVYRN-QLT 435 (788)
T ss_pred ceEEecCCc--------ccCCCC----------cccCCCEEEccCC-cCCCCCc---------chhhhhhhhhccC-ccc
Confidence 999998543 333221 3468999999998 4655543 2457899999995 588
Q ss_pred CCCCCCcccCCcceEEEccccc
Q 003367 782 ALPDHLLLTTKMNELTMNWCSV 803 (826)
Q Consensus 782 ~lp~~l~~l~~L~~L~l~~c~~ 803 (826)
.+|..+..+++|+.|++++|+-
T Consensus 436 ~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 436 RLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred ccChHHhhccCCCeEECCCCCC
Confidence 9999999999999999999973
No 19
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.43 E-value=1e-11 Score=151.99 Aligned_cols=293 Identities=13% Similarity=0.159 Sum_probs=178.4
Q ss_pred CCccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCC-CCCHHHHHHH
Q 003367 77 VSKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSD-PVDEIRVAKA 155 (826)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~ 155 (826)
.+.+|-|+.-.+.+.+ . ...+++.|+|++|.||||++.++..+ ++.++|+++.. +.+...+...
T Consensus 13 ~~~~~~R~rl~~~l~~----~-----~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~ 77 (903)
T PRK04841 13 LHNTVVRERLLAKLSG----A-----NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASY 77 (903)
T ss_pred ccccCcchHHHHHHhc----c-----cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHH
Confidence 3456777765555532 1 25689999999999999999998862 22689999964 4466677777
Q ss_pred HHHHhcccchh----h---------hhHHHHHHHHHHHh-c-CCceeEEeccCCCCChhhHHHHH-hhhcCCCCCcEEEE
Q 003367 156 ILESFRDVVSA----V---------AAFDTLLRHIEKSV-K-GKKFLLVLDDVWSGNPTKWEELV-STLKFGSPESRILV 219 (826)
Q Consensus 156 i~~~l~~~~~~----~---------~~~~~~~~~l~~~l-~-~k~~LlVlDdv~~~~~~~~~~l~-~~~~~~~~~s~iiv 219 (826)
++..+...... . .....+...+-..+ . +.+++|||||++.-+........ ..+....++.++||
T Consensus 78 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~ 157 (903)
T PRK04841 78 LIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVV 157 (903)
T ss_pred HHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEE
Confidence 77776421111 0 11222233233333 2 68999999999765544444333 34444556778999
Q ss_pred ecccHHHH---hhccccceEEcc----CCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHHhhhhc
Q 003367 220 TTRKEDVA---KMMRTTSMILLA----KLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTSGSLLS 292 (826)
Q Consensus 220 TtR~~~v~---~~~~~~~~~~l~----~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~ 292 (826)
|||...-. .........++. +|+.+|+.++|.......- -.+.+.+|.+.|+|.|+++..++..++
T Consensus 158 ~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~-------~~~~~~~l~~~t~Gwp~~l~l~~~~~~ 230 (903)
T PRK04841 158 LSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI-------EAAESSRLCDDVEGWATALQLIALSAR 230 (903)
T ss_pred EeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC-------CHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 99974211 110112345555 8999999999987643221 145567899999999999999887765
Q ss_pred CCcC-HHHHHHhhhhhcccccc-cCcCcchhhhh-hccCCcHHHHHHhhhhccCCCCceeCHHHHHHHHHHcCCcccCCC
Q 003367 293 LKTT-MEQWKTVLDSEIWKVED-VEKGLLPPLVI-SYFDLPSIVRRCFSYCAIFPKGYEINKDHLIKLWMAQGYLKVEGR 369 (826)
Q Consensus 293 ~~~~-~~~w~~~~~~~~~~~~~-~~~~i~~~l~~-sy~~L~~~~k~~fl~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~ 369 (826)
.... ..... +.+.. ....+...+.- .++.||++.+..++..|+++. ++.+.+-.. ...
T Consensus 231 ~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~~---~~~~l~~~l------~~~--- 291 (903)
T PRK04841 231 QNNSSLHDSA-------RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLRS---MNDALIVRV------TGE--- 291 (903)
T ss_pred hCCCchhhhh-------HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccccc---CCHHHHHHH------cCC---
Confidence 4321 11100 01111 11224443333 378999999999999999862 343222211 111
Q ss_pred chHHHHHHHHHHHHhhccCcccccCCCCCCeeeEEEEchhHHHHHHHhh
Q 003367 370 EDMELIGEECFVNLATRSFFQDFERSEYDGSIISCKMHDIVHDFAQFLA 418 (826)
Q Consensus 370 ~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~~mhdlv~dl~~~~~ 418 (826)
+.+...++++.+.+++...... .+ . .|+.|++++++...-.
T Consensus 292 ----~~~~~~L~~l~~~~l~~~~~~~-~~--~-~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 292 ----ENGQMRLEELERQGLFIQRMDD-SG--E-WFRYHPLFASFLRHRC 332 (903)
T ss_pred ----CcHHHHHHHHHHCCCeeEeecC-CC--C-EEehhHHHHHHHHHHH
Confidence 1135678889888886432111 11 1 5788999999987653
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.41 E-value=3.3e-13 Score=154.64 Aligned_cols=245 Identities=19% Similarity=0.270 Sum_probs=176.2
Q ss_pred CCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCC
Q 003367 462 TCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINL 541 (826)
Q Consensus 462 ~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L 541 (826)
.+..+|+++ .+ .+..+|..+. .+|+.|+|++|. +..+|..+. .+|++|++++|. +..+|..+. .+|
T Consensus 178 ~~~~~L~L~-----~~-~LtsLP~~Ip--~~L~~L~Ls~N~-LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L 243 (754)
T PRK15370 178 NNKTELRLK-----IL-GLTTIPACIP--EQITTLILDNNE-LKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTI 243 (754)
T ss_pred cCceEEEeC-----CC-CcCcCCcccc--cCCcEEEecCCC-CCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccc
Confidence 356788888 44 6667887664 589999999998 788998765 599999999998 567887664 479
Q ss_pred CeeeecCcccccCCccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCCc
Q 003367 542 RHLINEGTPLLYLPKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKH 621 (826)
Q Consensus 542 ~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~ 621 (826)
+.|++++|.+..+|..+. .+|+.|++..+... .++. .+ ..+
T Consensus 244 ~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~----------------------------------~l--~~s 284 (754)
T PRK15370 244 QEMELSINRITELPERLP--SALQSLDLFHNKIS-CLPE----------------------------------NL--PEE 284 (754)
T ss_pred cEEECcCCccCcCChhHh--CCCCEEECcCCccC-cccc----------------------------------cc--CCC
Confidence 999999999999998764 47888877654331 1000 01 125
Q ss_pred CCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC-CCCCCCc
Q 003367 622 LVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP-SLGRLPS 700 (826)
Q Consensus 622 L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~l~~ 700 (826)
|+.|+++.|.+...+ ..+ +++|+.|++++|.+..+ |..+ .++|+.|++++|.+.+ +| .+. ++
T Consensus 285 L~~L~Ls~N~Lt~LP---------~~l--p~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~s 347 (754)
T PRK15370 285 LRYLSVYDNSIRTLP---------AHL--PSGITHLNVQSNSLTAL-PETL--PPGLKTLEAGENALTS-LPASLP--PE 347 (754)
T ss_pred CcEEECCCCccccCc---------ccc--hhhHHHHHhcCCccccC-Cccc--cccceeccccCCcccc-CChhhc--Cc
Confidence 677777777654221 112 25799999999999887 6544 3789999999998875 55 443 79
Q ss_pred cceeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCCCCC
Q 003367 701 LESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKL 780 (826)
Q Consensus 701 L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 780 (826)
|+.|++++|. +..++. ...++|+.|++++| .+..++. .+ .++|+.|++++| .+
T Consensus 348 L~~L~Ls~N~-L~~LP~----------------~lp~~L~~LdLs~N-~Lt~LP~------~l--~~sL~~LdLs~N-~L 400 (754)
T PRK15370 348 LQVLDVSKNQ-ITVLPE----------------TLPPTITTLDVSRN-ALTNLPE------NL--PAALQIMQASRN-NL 400 (754)
T ss_pred ccEEECCCCC-CCcCCh----------------hhcCCcCEEECCCC-cCCCCCH------hH--HHHHHHHhhccC-Cc
Confidence 9999999764 222221 12468999999998 5666543 21 247999999995 57
Q ss_pred CCCCCCCcc----cCCcceEEEccccc
Q 003367 781 KALPDHLLL----TTKMNELTMNWCSV 803 (826)
Q Consensus 781 ~~lp~~l~~----l~~L~~L~l~~c~~ 803 (826)
..+|..+.+ ++.+..|++.++|-
T Consensus 401 ~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 401 VRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred ccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 788876543 47889999999984
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.38 E-value=1.6e-14 Score=143.93 Aligned_cols=259 Identities=20% Similarity=0.182 Sum_probs=164.2
Q ss_pred CCcceEEEEEecCCCCccccCCcccchhhhchhhhccCCCCcEEeccccccccccccccc-cccccCCCCccEEEccCCC
Q 003367 424 ETKLRSLSIVHKSNSSTIFPGIRDSVADIALPSLFDRLTCLRTLCLRCHERHFCLSIARL-PRNIKKLKHLRYLNLSNND 502 (826)
Q Consensus 424 ~~~lr~l~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l~~L~~L~Ls~~~ 502 (826)
+.....+.+..| .++.+.|..|+.+++||.|||+ .| .+..| |.+|.++..|..|-+.+++
T Consensus 66 P~~tveirLdqN-------------~I~~iP~~aF~~l~~LRrLdLS-----~N-~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 66 PPETVEIRLDQN-------------QISSIPPGAFKTLHRLRRLDLS-----KN-NISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred CCcceEEEeccC-------------CcccCChhhccchhhhceeccc-----cc-chhhcChHhhhhhHhhhHHHhhcCC
Confidence 445555566555 3334457899999999999999 44 44444 8899999999998888844
Q ss_pred Cccccch-hhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCcccccCCc-cCCCCCCCCcCCceeeCcccCcCc
Q 003367 503 AIYELPE-ALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPLLYLPK-GLERLTCLRTLSEFTVSDIENVSK 580 (826)
Q Consensus 503 ~~~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~~ 580 (826)
.+..+|+ .|.+|..||.|.+.-|++.-...+.+..|++|..|.+..|.+..++. .+..+.+++++.+..+.....
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd--- 203 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD--- 203 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc---
Confidence 4999995 59999999999999999777777899999999999999999999998 589999999998776653211
Q ss_pred ccCcccccccccCCCceEEcccCCCC--ChhhhhhhhccCCCcC---CceeeEeecCCCcccccchHHHhhcCCCCCCcC
Q 003367 581 AGSLQCLQNLNHLQGSLVLTALGNVT--DVGEAKSAKLESKKHL---VCLRLEFIKLGRVELVDKDNEVLEALQPSPDLE 655 (826)
Q Consensus 581 ~~~l~~L~~L~~L~~~l~~~~l~~~~--~~~~~~~~~l~~~~~L---~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~ 655 (826)
..++.+..-.... .....+...+. .+.......+...+.+ +.+.-. +......+ .......+..+++|+
T Consensus 204 -CnL~wla~~~a~~-~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~---~~~~d~~d-~~cP~~cf~~L~~L~ 277 (498)
T KOG4237|consen 204 -CNLPWLADDLAMN-PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSR---LSSEDFPD-SICPAKCFKKLPNLR 277 (498)
T ss_pred -cccchhhhHHhhc-hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHh---hccccCcC-CcChHHHHhhcccce
Confidence 1111111100000 00000000000 0000001111111111 111000 00000000 001112366778888
Q ss_pred eEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC-CCCCCCccceeeccccc
Q 003367 656 KLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP-SLGRLPSLESLVVEALS 710 (826)
Q Consensus 656 ~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 710 (826)
+|+|++|.++.+-+.||..+..++.|.|..|++...-. .+.++..|+.|+|+++.
T Consensus 278 ~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~ 333 (498)
T KOG4237|consen 278 KLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQ 333 (498)
T ss_pred EeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCe
Confidence 88888888888878888888888888888888754333 67788888888888544
No 22
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.38 E-value=1.6e-10 Score=126.78 Aligned_cols=301 Identities=14% Similarity=0.090 Sum_probs=175.1
Q ss_pred cCCccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHH
Q 003367 76 DVSKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKA 155 (826)
Q Consensus 76 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 155 (826)
.++.++||++++++|...+...-. +.....+.|+|++|+|||++++.++++.......-.++++++....+...++..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 456799999999999999854321 123456889999999999999999986543322234567777777788889999
Q ss_pred HHHHhccc-c-hhhhhHHHHHHHHHHHhc--CCceeEEeccCCCCC----hhhHHHHHhhhcCCCCCcE--EEEecccHH
Q 003367 156 ILESFRDV-V-SAVAAFDTLLRHIEKSVK--GKKFLLVLDDVWSGN----PTKWEELVSTLKFGSPESR--ILVTTRKED 225 (826)
Q Consensus 156 i~~~l~~~-~-~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~----~~~~~~l~~~~~~~~~~s~--iivTtR~~~ 225 (826)
++.++... . ......+++.+.+.+.+. ++..+||||+++.-. .+.+..+...+.. ..+++ +|.++....
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLT 184 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcc
Confidence 99998752 1 122234556666666664 456899999995421 1223333332222 22333 566655543
Q ss_pred HHhhcc-------ccceEEccCCCCchhHHHHHHhhhcCC--CcccchhhHHHHHHHHHhcCCCchhHHHHhhhh-----
Q 003367 226 VAKMMR-------TTSMILLAKLPDNDCWSLFSQIAFSGR--TTEECQKLTDIGRMIADKCNGLPLAAKTSGSLL----- 291 (826)
Q Consensus 226 v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~a~~~~--~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l----- 291 (826)
+..... ....+.+.+++.++..+++..++.... ....+..++.+++......|..+.|+..+-...
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 322211 124678999999999999988763221 112222223333333333455777776654321
Q ss_pred cCC--cCHHHHHHhhhhhcccccccCcCcchhhhhhccCCcHHHHHHhhhhccCCC--CceeCHHHHHHH--HHHcCCc-
Q 003367 292 SLK--TTMEQWKTVLDSEIWKVEDVEKGLLPPLVISYFDLPSIVRRCFSYCAIFPK--GYEINKDHLIKL--WMAQGYL- 364 (826)
Q Consensus 292 ~~~--~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~fp~--~~~i~~~~li~~--w~a~g~i- 364 (826)
++. -+.+....+.+... .....-.+..||.+.|..+..++..-+ ...+....+... .+++.+-
T Consensus 265 ~~~~~I~~~~v~~a~~~~~----------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~ 334 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKSE----------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY 334 (394)
T ss_pred cCCCCcCHHHHHHHHHHHH----------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC
Confidence 111 14455555444320 122344678999988887766653321 133555555532 2332221
Q ss_pred ccCCCchHHHHHHHHHHHHhhccCccccc
Q 003367 365 KVEGREDMELIGEECFVNLATRSFFQDFE 393 (826)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~L~~~sll~~~~ 393 (826)
.+. + ......++.+|...+++....
T Consensus 335 ~~~---~-~~~~~~~l~~L~~~glI~~~~ 359 (394)
T PRK00411 335 EPR---T-HTRFYEYINKLDMLGIINTRY 359 (394)
T ss_pred CcC---c-HHHHHHHHHHHHhcCCeEEEE
Confidence 111 1 122356899999999998653
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.32 E-value=4.2e-14 Score=124.68 Aligned_cols=146 Identities=26% Similarity=0.339 Sum_probs=119.2
Q ss_pred CCcceEEEEEecCCCCccccCCcccchhhhchhhhccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCC
Q 003367 424 ETKLRSLSIVHKSNSSTIFPGIRDSVADIALPSLFDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDA 503 (826)
Q Consensus 424 ~~~lr~l~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~ 503 (826)
+..+.+|.++++.. +.+|+-+..+.+|++|++. ++ .++.+|.++..+++||.|++.-|+
T Consensus 32 ~s~ITrLtLSHNKl--------------~~vppnia~l~nlevln~~-----nn-qie~lp~~issl~klr~lnvgmnr- 90 (264)
T KOG0617|consen 32 MSNITRLTLSHNKL--------------TVVPPNIAELKNLEVLNLS-----NN-QIEELPTSISSLPKLRILNVGMNR- 90 (264)
T ss_pred hhhhhhhhcccCce--------------eecCCcHHHhhhhhhhhcc-----cc-hhhhcChhhhhchhhhheecchhh-
Confidence 34456666777632 2246778999999999998 55 889999999999999999999998
Q ss_pred ccccchhhcCCCCCcEEeccCCCCC-cccchhhhcccCCCeeeecCcccccCCccCCCCCCCCcCCceeeCcccCcCccc
Q 003367 504 IYELPEALCDLCNLQTLDVSNCGNL-HALPQGIAKLINLRHLINEGTPLLYLPKGLERLTCLRTLSEFTVSDIENVSKAG 582 (826)
Q Consensus 504 ~~~lp~~i~~L~~L~~L~L~~~~~~-~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~ 582 (826)
+..+|..|+.++-|++|||.+|.+. ..+|..|..++.|+-|+++.|.+..+|..+++|++||.|.+..+..++-....+
T Consensus 91 l~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig 170 (264)
T KOG0617|consen 91 LNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIG 170 (264)
T ss_pred hhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHH
Confidence 8999999999999999999988754 469999999999999999999999999999999999999888877654333333
Q ss_pred Cccccccc
Q 003367 583 SLQCLQNL 590 (826)
Q Consensus 583 ~l~~L~~L 590 (826)
.+..|+.|
T Consensus 171 ~lt~lrel 178 (264)
T KOG0617|consen 171 DLTRLREL 178 (264)
T ss_pred HHHHHHHH
Confidence 33333333
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.29 E-value=1.9e-13 Score=145.70 Aligned_cols=118 Identities=26% Similarity=0.245 Sum_probs=72.5
Q ss_pred hhhhccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCc------cccchhhcCCCCCcEEeccCCCCC
Q 003367 455 PSLFDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAI------YELPEALCDLCNLQTLDVSNCGNL 528 (826)
Q Consensus 455 ~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~------~~lp~~i~~L~~L~~L~L~~~~~~ 528 (826)
+..|..+.+|++|+++++.+... ....++..+...+.|++|+++++... ..++..+..+++|+.|++++|.+.
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~-~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEE-AAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG 94 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHH-HHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence 34556667788888885443221 23345666677777888888877632 123455667788888888888765
Q ss_pred cccchhhhcccC---CCeeeecCccccc-----CCccCCCC-CCCCcCCceeeC
Q 003367 529 HALPQGIAKLIN---LRHLINEGTPLLY-----LPKGLERL-TCLRTLSEFTVS 573 (826)
Q Consensus 529 ~~lp~~i~~L~~---L~~L~l~~~~l~~-----lp~~i~~L-~~L~~L~~~~~~ 573 (826)
...+..+..+.+ |++|++++|.+.. +...+..+ ++|+.|++.++.
T Consensus 95 ~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 95 PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence 556666666655 8888887776651 22233444 555555554443
No 25
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.29 E-value=2.2e-10 Score=118.60 Aligned_cols=183 Identities=18% Similarity=0.176 Sum_probs=116.6
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhh---hHHHHHHHHHHH-
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVA---AFDTLLRHIEKS- 180 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~---~~~~~~~~l~~~- 180 (826)
..++.|+|++|+||||+++.+++..... .+ .++|+ +....+..+++..++..++....... ....+...+...
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~ 119 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQF 119 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999854321 11 12233 33345677888899988875432221 122333333332
Q ss_pred hcCCceeEEeccCCCCChhhHHHHHhhhcCC---CCCcEEEEecccHHHHhhcc----------ccceEEccCCCCchhH
Q 003367 181 VKGKKFLLVLDDVWSGNPTKWEELVSTLKFG---SPESRILVTTRKEDVAKMMR----------TTSMILLAKLPDNDCW 247 (826)
Q Consensus 181 l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~---~~~s~iivTtR~~~v~~~~~----------~~~~~~l~~L~~~~~~ 247 (826)
..+++.++|+||+|.-+...++.+....... .....|++|.... ....+. ....+.+.+++.+|..
T Consensus 120 ~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~ 198 (269)
T TIGR03015 120 AAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETR 198 (269)
T ss_pred hCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHH
Confidence 3678899999999887666677665433221 2223455665543 221111 1346789999999999
Q ss_pred HHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHHhhhh
Q 003367 248 SLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTSGSLL 291 (826)
Q Consensus 248 ~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l 291 (826)
+++...+..........-..+..+.|++.++|.|..|..++..+
T Consensus 199 ~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 199 EYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99987764322111111235788999999999999999988765
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.28 E-value=1.7e-12 Score=151.13 Aligned_cols=301 Identities=26% Similarity=0.302 Sum_probs=177.3
Q ss_pred cCCCCcEEeccccccccccccccccc-cccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcc
Q 003367 460 RLTCLRTLCLRCHERHFCLSIARLPR-NIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKL 538 (826)
Q Consensus 460 ~l~~Lr~L~L~~~~~~~~~~~~~lp~-~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L 538 (826)
.++.|++|-+..|.. .+..++. .|..++.|++|||++|...+.+|++|++|.+|++|+++++. +..+|.++++|
T Consensus 543 ~~~~L~tLll~~n~~----~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~L 617 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSD----WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNL 617 (889)
T ss_pred CCCccceEEEeecch----hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHH
Confidence 445788888883321 1444443 37789999999999998899999999999999999999998 77999999999
Q ss_pred cCCCeeeecCcccc-cCCccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhcc
Q 003367 539 INLRHLINEGTPLL-YLPKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLE 617 (826)
Q Consensus 539 ~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~ 617 (826)
.+|.+|++..+.-. .+|..+..|.+|++|.+....... ....+.++.+|..|. .+....... .....+.
T Consensus 618 k~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~---~~~~l~el~~Le~L~-~ls~~~~s~------~~~e~l~ 687 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN---DKLLLKELENLEHLE-NLSITISSV------LLLEDLL 687 (889)
T ss_pred HhhheeccccccccccccchhhhcccccEEEeecccccc---chhhHHhhhcccchh-hheeecchh------HhHhhhh
Confidence 99999999966544 444445669999999887655211 233344444444333 111111000 0001111
Q ss_pred CCCcCC----ceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCccc-----C-ccCCcEEEEecCC
Q 003367 618 SKKHLV----CLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLM-----S-LTELRMLNLQRCG 687 (826)
Q Consensus 618 ~~~~L~----~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~-----~-l~~L~~L~L~~~~ 687 (826)
.+..|. .+.+..+. .......+..+.+|+.|.+.++.+......|.. . +++|..+.+.+|.
T Consensus 688 ~~~~L~~~~~~l~~~~~~---------~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~ 758 (889)
T KOG4658|consen 688 GMTRLRSLLQSLSIEGCS---------KRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCH 758 (889)
T ss_pred hhHHHHHHhHhhhhcccc---------cceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccc
Confidence 111221 11111111 122334455677888888888877654333322 1 4456666666666
Q ss_pred CCCCCCCCCCCCccceeeccccccceEeCcccccCCCCccccCccCcCCCcccee-eccccccccccccccccccCcCCC
Q 003367 688 KCEQLPSLGRLPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFL-EFRDMDEWEEWDYVISGQKDIKIM 766 (826)
Q Consensus 688 ~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~l~~~~~~~~~~~~~~~l 766 (826)
....+......|+|+.|.+..|..++.+-+........ ......|.++..+ .+.+...+..+.. .. -.+
T Consensus 759 ~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l----~~~i~~f~~~~~l~~~~~l~~l~~i~~-----~~-l~~ 828 (889)
T KOG4658|consen 759 MLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLEL----KELILPFNKLEGLRMLCSLGGLPQLYW-----LP-LSF 828 (889)
T ss_pred cccccchhhccCcccEEEEecccccccCCCHHHHhhhc----ccEEecccccccceeeecCCCCceeEe-----cc-cCc
Confidence 55554444556788888888777666554432221110 0012245555555 3444444433322 01 134
Q ss_pred CccceeeecCCCCCCCCCCCCcccCCcceEEEccc
Q 003367 767 PRLHRLKLDGCHKLKALPDHLLLTTKMNELTMNWC 801 (826)
Q Consensus 767 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 801 (826)
+.|+.+.+..|++++.+|. +.++.+.+|
T Consensus 829 ~~l~~~~ve~~p~l~~~P~-------~~~~~i~~~ 856 (889)
T KOG4658|consen 829 LKLEELIVEECPKLGKLPL-------LSTLTIVGC 856 (889)
T ss_pred cchhheehhcCcccccCcc-------ccccceecc
Confidence 5588888888888887774 445666665
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.24 E-value=1.3e-13 Score=137.55 Aligned_cols=105 Identities=25% Similarity=0.361 Sum_probs=79.6
Q ss_pred CcEEecccccccccccccccc-ccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccch-hhhcccCC
Q 003367 464 LRTLCLRCHERHFCLSIARLP-RNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQ-GIAKLINL 541 (826)
Q Consensus 464 Lr~L~L~~~~~~~~~~~~~lp-~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L 541 (826)
-..++|. .| .+..+| .+|+.+++||.||||+|.+...-|+.|.+|.+|..|-+.++..+..+|. .|++|..|
T Consensus 69 tveirLd-----qN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 69 TVEIRLD-----QN-QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred ceEEEec-----cC-CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 3456666 44 666675 5688899999999999986666788888898888887777444677774 57888899
Q ss_pred CeeeecCcccccCCcc-CCCCCCCCcCCceeeCc
Q 003367 542 RHLINEGTPLLYLPKG-LERLTCLRTLSEFTVSD 574 (826)
Q Consensus 542 ~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~ 574 (826)
+.|.+.-|.+..++.. +..|++|..|.++++..
T Consensus 143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~ 176 (498)
T KOG4237|consen 143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKI 176 (498)
T ss_pred HHHhcChhhhcchhHHHHHHhhhcchhcccchhh
Confidence 9888888888866654 78888888888877655
No 28
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.23 E-value=1.9e-09 Score=116.90 Aligned_cols=302 Identities=12% Similarity=0.078 Sum_probs=169.0
Q ss_pred cCCccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccc-cCC---CcEEEEEeCCCCCHHH
Q 003367 76 DVSKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVD-AHF---DKRIWVCFSDPVDEIR 151 (826)
Q Consensus 76 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f---~~~~wv~~~~~~~~~~ 151 (826)
.++.++||++++++|..++...-. +.....+.|+|++|+|||+++++++++.... ... -..+|+++....+...
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~ 90 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQ 90 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHH
Confidence 345799999999999999864221 1234578999999999999999999854211 111 1356788877777888
Q ss_pred HHHHHHHHhc---ccch-hhhhHHHHHHHHHHHh--cCCceeEEeccCCCCC---hhhHHHHHhhh-cCCC--CCcEEEE
Q 003367 152 VAKAILESFR---DVVS-AVAAFDTLLRHIEKSV--KGKKFLLVLDDVWSGN---PTKWEELVSTL-KFGS--PESRILV 219 (826)
Q Consensus 152 ~~~~i~~~l~---~~~~-~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~---~~~~~~l~~~~-~~~~--~~s~iiv 219 (826)
++..|++++. ...+ ...+..+....+.+.+ .+++++||||+++.-. ......+.... .... ....+|.
T Consensus 91 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~ 170 (365)
T TIGR02928 91 VLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIG 170 (365)
T ss_pred HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEE
Confidence 9999999884 2211 1122334444555555 3568899999995431 11112222211 1111 2234455
Q ss_pred ecccHHHHhhcc-------ccceEEccCCCCchhHHHHHHhhhcC-CCcccchhhHHHHHHHHHhcCCCchhH-HHHhhh
Q 003367 220 TTRKEDVAKMMR-------TTSMILLAKLPDNDCWSLFSQIAFSG-RTTEECQKLTDIGRMIADKCNGLPLAA-KTSGSL 290 (826)
Q Consensus 220 TtR~~~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~a~~~-~~~~~~~~~~~~~~~i~~~~~glPLal-~~~~~~ 290 (826)
+++.......+. ....+.+.+.+.++..+++..++... ....-.++..+...+++..+.|.|-.+ ..+-..
T Consensus 171 i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a 250 (365)
T TIGR02928 171 ISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVA 250 (365)
T ss_pred EECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 554433221111 12468899999999999998886311 111122233344555777777888533 322111
Q ss_pred h----c-CC--cCHHHHHHhhhhhcccccccCcCcchhhhhhccCCcHHHHHHhhhhccCC--CCceeCHHHHHHHHH--
Q 003367 291 L----S-LK--TTMEQWKTVLDSEIWKVEDVEKGLLPPLVISYFDLPSIVRRCFSYCAIFP--KGYEINKDHLIKLWM-- 359 (826)
Q Consensus 291 l----~-~~--~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~fp--~~~~i~~~~li~~w~-- 359 (826)
. . +. -+.+..+.+.+... .....-+...||.+.+..+..++..- .+..+...++...+.
T Consensus 251 ~~~a~~~~~~~it~~~v~~a~~~~~----------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~ 320 (365)
T TIGR02928 251 GEIAEREGAERVTEDHVEKAQEKIE----------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEV 320 (365)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 1 1 11 13344333333210 12233456789988887666655321 333456666655321
Q ss_pred HcCC-cccCCCchHHHHHHHHHHHHhhccCccccc
Q 003367 360 AQGY-LKVEGREDMELIGEECFVNLATRSFFQDFE 393 (826)
Q Consensus 360 a~g~-i~~~~~~~~~~~~~~~~~~L~~~sll~~~~ 393 (826)
++.+ +.+. .......++..|...+++....
T Consensus 321 ~~~~~~~~~----~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 321 CEDIGVDPL----TQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHhcCCCCC----cHHHHHHHHHHHHhcCCeEEEE
Confidence 2211 1111 2344567788999999988653
No 29
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.20 E-value=6.9e-11 Score=119.74 Aligned_cols=193 Identities=21% Similarity=0.263 Sum_probs=100.3
Q ss_pred cccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHH---
Q 003367 80 VRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAI--- 156 (826)
Q Consensus 80 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i--- 156 (826)
|+||++|+++|.+++... ..+.+.|+|+.|+|||+|++++.+..+ ..-..++|+........ .....+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~~--~~~~~~~y~~~~~~~~~-~~~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINELK--EKGYKVVYIDFLEESNE-SSLRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHCT----EECCCHHCCTTBSHH-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHhh--hcCCcEEEEecccchhh-hHHHHHHHH
Confidence 799999999999998653 346899999999999999999998442 21113444444333322 222222
Q ss_pred -------HHHhcccc--------------hhhhhHHHHHHHHHHHhcCCceeEEeccCCCCC------hhhHHHHHhhhc
Q 003367 157 -------LESFRDVV--------------SAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGN------PTKWEELVSTLK 209 (826)
Q Consensus 157 -------~~~l~~~~--------------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------~~~~~~l~~~~~ 209 (826)
.+.+.... ........+.+.+.+ .+++++||+||+..-. ..-...+...+.
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~--~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~ 149 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKK--KGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLD 149 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHH--CHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHh--cCCcEEEEEecHHHHhhcccchHHHHHHHHHHHh
Confidence 11121100 011122233333332 2345999999994322 111222333333
Q ss_pred C--CCCCcEEEEecccHHHHhh--------ccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCC
Q 003367 210 F--GSPESRILVTTRKEDVAKM--------MRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNG 279 (826)
Q Consensus 210 ~--~~~~s~iivTtR~~~v~~~--------~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g 279 (826)
. ......+|++.....+... .+....+.+++|+.+++++++...+-.. ... +.-.+..++|...+||
T Consensus 150 ~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~--~~~~~~~~~i~~~~gG 226 (234)
T PF01637_consen 150 SLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL--PFSDEDIEEIYSLTGG 226 (234)
T ss_dssp H----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT
T ss_pred hccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc--cCCHHHHHHHHHHhCC
Confidence 2 2233344444444433332 1223459999999999999998865333 111 1124556899999999
Q ss_pred CchhHHH
Q 003367 280 LPLAAKT 286 (826)
Q Consensus 280 lPLal~~ 286 (826)
+|..|..
T Consensus 227 ~P~~l~~ 233 (234)
T PF01637_consen 227 NPRYLQE 233 (234)
T ss_dssp -HHHHHH
T ss_pred CHHHHhc
Confidence 9998764
No 30
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.19 E-value=1.8e-10 Score=121.98 Aligned_cols=262 Identities=19% Similarity=0.222 Sum_probs=141.7
Q ss_pred CCccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHH
Q 003367 77 VSKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAI 156 (826)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 156 (826)
-.+|+|+++.++.+..++..... .......+.|+|++|+||||+|+.+++... ..+ .++... .......+..+
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l~--~~~---~~~~~~-~~~~~~~l~~~ 96 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEMG--VNI---RITSGP-ALEKPGDLAAI 96 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHhC--CCe---EEEecc-cccChHHHHHH
Confidence 35699999999999888754211 123456789999999999999999999543 221 122211 11111112222
Q ss_pred HHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcC-------------------CCCCcEE
Q 003367 157 LESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKF-------------------GSPESRI 217 (826)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~-------------------~~~~s~i 217 (826)
+..+ ++.-+|++|+++.-.....+.+...+.. ..+.+-|
T Consensus 97 l~~l----------------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li 154 (328)
T PRK00080 97 LTNL----------------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLI 154 (328)
T ss_pred HHhc----------------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEE
Confidence 2222 2233555666532221111222111110 1123455
Q ss_pred EEecccHHHHhhcc--ccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHHhhhhcCCc
Q 003367 218 LVTTRKEDVAKMMR--TTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTSGSLLSLKT 295 (826)
Q Consensus 218 ivTtR~~~v~~~~~--~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~ 295 (826)
..|++...+...+. ....+++++++.++..+++.+.+.......+ .+.+..|++.|+|.|-.+..+...+
T Consensus 155 ~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~----~~~~~~ia~~~~G~pR~a~~~l~~~---- 226 (328)
T PRK00080 155 GATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEID----EEGALEIARRSRGTPRIANRLLRRV---- 226 (328)
T ss_pred eecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHcCCCchHHHHHHHHH----
Confidence 66777544333221 1346899999999999999988765433222 4678899999999996554444322
Q ss_pred CHHHHHHhhhhhccccc-ccCcCcchhhhhhccCCcHHHHHHhh-hhccCCCCceeCHHHHHHHHHHcCCcccCCCchHH
Q 003367 296 TMEQWKTVLDSEIWKVE-DVEKGLLPPLVISYFDLPSIVRRCFS-YCAIFPKGYEINKDHLIKLWMAQGYLKVEGREDME 373 (826)
Q Consensus 296 ~~~~w~~~~~~~~~~~~-~~~~~i~~~l~~sy~~L~~~~k~~fl-~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~ 373 (826)
..|....... .+. ..-......+...+..|++..+..+. ....|..+ .+..+.+...+ | ....+.
T Consensus 227 --~~~a~~~~~~--~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g----~~~~~~- 293 (328)
T PRK00080 227 --RDFAQVKGDG--VITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---G----EERDTI- 293 (328)
T ss_pred --HHHHHHcCCC--CCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---C----CCcchH-
Confidence 1222111000 000 00011234456778889988888775 66666655 45555543322 1 111222
Q ss_pred HHHHHHHH-HHhhccCccc
Q 003367 374 LIGEECFV-NLATRSFFQD 391 (826)
Q Consensus 374 ~~~~~~~~-~L~~~sll~~ 391 (826)
++.++ .|++.++++.
T Consensus 294 ---~~~~e~~Li~~~li~~ 309 (328)
T PRK00080 294 ---EDVYEPYLIQQGFIQR 309 (328)
T ss_pred ---HHHhhHHHHHcCCccc
Confidence 33344 6788888864
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.18 E-value=2.4e-12 Score=137.20 Aligned_cols=119 Identities=27% Similarity=0.240 Sum_probs=81.8
Q ss_pred chhhhccCCCCcEEecccccccc-ccccccccccccCCCCccEEEccCCCCccccchhhcCCCC---CcEEeccCCCCCc
Q 003367 454 LPSLFDRLTCLRTLCLRCHERHF-CLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCN---LQTLDVSNCGNLH 529 (826)
Q Consensus 454 ~~~~~~~l~~Lr~L~L~~~~~~~-~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~---L~~L~L~~~~~~~ 529 (826)
++..+...+.|+.|+++.+.... ...+..++..+..+++|++|++++|.+....+..+..+.+ |++|++++|....
T Consensus 43 i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~ 122 (319)
T cd00116 43 LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD 122 (319)
T ss_pred HHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccch
Confidence 35567788889999998554431 1133445667778899999999999855556666665555 9999999998542
Q ss_pred ----ccchhhhcc-cCCCeeeecCcccc-----cCCccCCCCCCCCcCCceee
Q 003367 530 ----ALPQGIAKL-INLRHLINEGTPLL-----YLPKGLERLTCLRTLSEFTV 572 (826)
Q Consensus 530 ----~lp~~i~~L-~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~~~~~ 572 (826)
.+...+..+ ++|+.|++++|.+. .++..+..+++|++|++..+
T Consensus 123 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n 175 (319)
T cd00116 123 RGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN 175 (319)
T ss_pred HHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC
Confidence 234456667 88999999988877 23344556666777766544
No 32
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.17 E-value=3.7e-10 Score=119.00 Aligned_cols=276 Identities=17% Similarity=0.131 Sum_probs=140.6
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
.+|+|+++.++++..++..... ....+..+.|+|++|+|||+||+++++... ..+ ..+.......... +...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~--~~~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEMG--VNL---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHhC--CCE---EEeccchhcCchh-HHHHH
Confidence 4699999999999988864321 122456788999999999999999998543 222 1222111111111 11222
Q ss_pred HHhcccch-hhhhH----HHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccHHHHhhcc-
Q 003367 158 ESFRDVVS-AVAAF----DTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKEDVAKMMR- 231 (826)
Q Consensus 158 ~~l~~~~~-~~~~~----~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~~v~~~~~- 231 (826)
..+....- -.+++ ....+.+...+.+.+..+|+|+.... ..+. . ...+.+-|..||+...+...+.
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~--~~~~---~---~~~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSA--RSVR---L---DLPPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccc--ccee---e---cCCCeEEEEecCCccccCHHHHh
Confidence 22211000 00000 01112233333333444444443211 1100 0 1123455666777654433211
Q ss_pred -ccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHHhhhhcCCcCHHHHHHhhhhhccc
Q 003367 232 -TTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTSGSLLSLKTTMEQWKTVLDSEIWK 310 (826)
Q Consensus 232 -~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~w~~~~~~~~~~ 310 (826)
....+.+++++.++..+++.+.+.......+ .+....|++.|+|.|-.+..++..+ |..........
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~----~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~ 216 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVEIE----PEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKI 216 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcC----HHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCC
Confidence 1346789999999999999988754332222 4567889999999997665444332 11110000000
Q ss_pred cc-ccCcCcchhhhhhccCCcHHHHHHhh-hhccCCCCceeCHHHHHHHHHHcCCcccCCCchHHHHHHHHHH-HHhhcc
Q 003367 311 VE-DVEKGLLPPLVISYFDLPSIVRRCFS-YCAIFPKGYEINKDHLIKLWMAQGYLKVEGREDMELIGEECFV-NLATRS 387 (826)
Q Consensus 311 ~~-~~~~~i~~~l~~sy~~L~~~~k~~fl-~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~-~L~~~s 387 (826)
+. +.-......+...|..++++.+..+. .++.+..+ .+..+.+-... |. ....++..++ .|++.+
T Consensus 217 it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~--------~~~~~~~~~e~~Li~~~ 284 (305)
T TIGR00635 217 INRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE--------DADTIEDVYEPYLLQIG 284 (305)
T ss_pred cCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC--------CcchHHHhhhHHHHHcC
Confidence 00 00011122256678899998887666 44666433 34443333222 11 1122444466 589999
Q ss_pred Ccccc
Q 003367 388 FFQDF 392 (826)
Q Consensus 388 ll~~~ 392 (826)
++...
T Consensus 285 li~~~ 289 (305)
T TIGR00635 285 FLQRT 289 (305)
T ss_pred CcccC
Confidence 99643
No 33
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.17 E-value=2.2e-09 Score=118.77 Aligned_cols=297 Identities=16% Similarity=0.174 Sum_probs=185.9
Q ss_pred CCccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCC-CCCHHHHHHH
Q 003367 77 VSKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSD-PVDEIRVAKA 155 (826)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~ 155 (826)
+...|-|..-.+.+.. . .+.|.+.|..++|.|||||+-+++. .. ..-..+.|.++.+ +.+...+...
T Consensus 18 ~~~~v~R~rL~~~L~~----~-----~~~RL~li~APAGfGKttl~aq~~~--~~-~~~~~v~Wlslde~dndp~rF~~y 85 (894)
T COG2909 18 PDNYVVRPRLLDRLRR----A-----NDYRLILISAPAGFGKTTLLAQWRE--LA-ADGAAVAWLSLDESDNDPARFLSY 85 (894)
T ss_pred cccccccHHHHHHHhc----C-----CCceEEEEeCCCCCcHHHHHHHHHH--hc-CcccceeEeecCCccCCHHHHHHH
Confidence 4456666655544433 2 3789999999999999999999986 21 2235689999866 4567788888
Q ss_pred HHHHhcccchhh-------------hhHHHHHHHHHHHhc--CCceeEEeccCCCCChhhHH-HHHhhhcCCCCCcEEEE
Q 003367 156 ILESFRDVVSAV-------------AAFDTLLRHIEKSVK--GKKFLLVLDDVWSGNPTKWE-ELVSTLKFGSPESRILV 219 (826)
Q Consensus 156 i~~~l~~~~~~~-------------~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~-~l~~~~~~~~~~s~iiv 219 (826)
++..++...+.. .++..+...+...+. .++..+||||.+-....... .+...+....++-.+||
T Consensus 86 Li~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv 165 (894)
T COG2909 86 LIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVV 165 (894)
T ss_pred HHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEE
Confidence 888876322211 122334444444332 56899999998664433333 45555566778889999
Q ss_pred ecccHHHHhh---ccccceEEcc----CCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHHhhhhc
Q 003367 220 TTRKEDVAKM---MRTTSMILLA----KLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTSGSLLS 292 (826)
Q Consensus 220 TtR~~~v~~~---~~~~~~~~l~----~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~ 292 (826)
|||...-... --.....++. .|+.+|+.++|.......- + ..-++.+.+..+|.+-|+..++=.++
T Consensus 166 ~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L---d----~~~~~~L~~~teGW~~al~L~aLa~~ 238 (894)
T COG2909 166 TSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL---D----AADLKALYDRTEGWAAALQLIALALR 238 (894)
T ss_pred EeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC---C----hHHHHHHHhhcccHHHHHHHHHHHcc
Confidence 9998642221 1112233333 4899999999988642211 1 44567899999999999999988887
Q ss_pred CCcCHHHHHHhhhhhcccccccCcCcchhhhhhccCCcHHHHHHhhhhccCCCCceeCHHHHHHHHHHcCCcccCCCchH
Q 003367 293 LKTTMEQWKTVLDSEIWKVEDVEKGLLPPLVISYFDLPSIVRRCFSYCAIFPKGYEINKDHLIKLWMAQGYLKVEGREDM 372 (826)
Q Consensus 293 ~~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~ 372 (826)
...+.+.--..+......+.++ ...--++.||+++|..++-+|+++.- -+.|+.....
T Consensus 239 ~~~~~~q~~~~LsG~~~~l~dY------L~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~Ltg------------ 296 (894)
T COG2909 239 NNTSAEQSLRGLSGAASHLSDY------LVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNALTG------------ 296 (894)
T ss_pred CCCcHHHHhhhccchHHHHHHH------HHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHHhc------------
Confidence 4444333222222110010000 12234688999999999999998542 2334333222
Q ss_pred HHHHHHHHHHHhhccCcccccCCCCCCeeeEEEEchhHHHHHHHhh
Q 003367 373 ELIGEECFVNLATRSFFQDFERSEYDGSIISCKMHDIVHDFAQFLA 418 (826)
Q Consensus 373 ~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~~mhdlv~dl~~~~~ 418 (826)
++-+...+++|.+++++-..-.+.. . .|+.|.++.+|.+.-.
T Consensus 297 ~~ng~amLe~L~~~gLFl~~Ldd~~---~-WfryH~LFaeFL~~r~ 338 (894)
T COG2909 297 EENGQAMLEELERRGLFLQRLDDEG---Q-WFRYHHLFAEFLRQRL 338 (894)
T ss_pred CCcHHHHHHHHHhCCCceeeecCCC---c-eeehhHHHHHHHHhhh
Confidence 1335667899999987653222111 1 7899999999986543
No 34
>PF05729 NACHT: NACHT domain
Probab=99.11 E-value=5e-10 Score=106.59 Aligned_cols=142 Identities=18% Similarity=0.345 Sum_probs=89.5
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccC----CCcEEEEEeCCCCCHH---HHHHHHHHHhcccchhhhhHHHHHHHHH
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAH----FDKRIWVCFSDPVDEI---RVAKAILESFRDVVSAVAAFDTLLRHIE 178 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 178 (826)
|++.|+|.+|+||||++++++.+...... +...+|++........ .+...|..+........ .. .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~---~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPI---EE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhh---HH---HHH
Confidence 58999999999999999999987654443 3456666665533322 34444444443221111 11 111
Q ss_pred H-HhcCCceeEEeccCCCCCh--h-----hHHHHHhhhcC--CCCCcEEEEecccHHH---HhhccccceEEccCCCCch
Q 003367 179 K-SVKGKKFLLVLDDVWSGNP--T-----KWEELVSTLKF--GSPESRILVTTRKEDV---AKMMRTTSMILLAKLPDND 245 (826)
Q Consensus 179 ~-~l~~k~~LlVlDdv~~~~~--~-----~~~~l~~~~~~--~~~~s~iivTtR~~~v---~~~~~~~~~~~l~~L~~~~ 245 (826)
. ....++++||+|++++... . .+..+...+.. ..++.++|||+|.... .........+++.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 1 1257899999999944221 1 12333332222 3678999999998765 3334445689999999999
Q ss_pred hHHHHHHh
Q 003367 246 CWSLFSQI 253 (826)
Q Consensus 246 ~~~lf~~~ 253 (826)
..+++.++
T Consensus 155 ~~~~~~~~ 162 (166)
T PF05729_consen 155 IKQYLRKY 162 (166)
T ss_pred HHHHHHHH
Confidence 99999775
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.93 E-value=4.1e-11 Score=125.53 Aligned_cols=111 Identities=37% Similarity=0.489 Sum_probs=93.7
Q ss_pred chhhhccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccch
Q 003367 454 LPSLFDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQ 533 (826)
Q Consensus 454 ~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~ 533 (826)
+|..+..|..|..|.|. .+ .+..+|..++.+..|.||+|+.|+ +..+|..++.|+ |+.|-+++|+ ++.+|.
T Consensus 90 lp~~~~~f~~Le~liLy-----~n-~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNNk-l~~lp~ 160 (722)
T KOG0532|consen 90 LPEEACAFVSLESLILY-----HN-CIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNNK-LTSLPE 160 (722)
T ss_pred CchHHHHHHHHHHHHHH-----hc-cceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecCc-cccCCc
Confidence 46777778888888887 44 677789999999999999999998 888998888775 8999999888 788999
Q ss_pred hhhcccCCCeeeecCcccccCCccCCCCCCCCcCCceeeC
Q 003367 534 GIAKLINLRHLINEGTPLLYLPKGLERLTCLRTLSEFTVS 573 (826)
Q Consensus 534 ~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~ 573 (826)
.++.+..|.+|+.++|.+..+|..++.+.+|+.|.+..+.
T Consensus 161 ~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~ 200 (722)
T KOG0532|consen 161 EIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH 200 (722)
T ss_pred ccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh
Confidence 9998889999999999999999988888888888665543
No 36
>PRK06893 DNA replication initiation factor; Validated
Probab=98.89 E-value=8.3e-09 Score=102.89 Aligned_cols=153 Identities=15% Similarity=0.204 Sum_probs=96.0
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCc
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKK 185 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 185 (826)
+.+.|+|++|+|||+||+++++... .....+.|+.+... ..... + +.+.+. +.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~--~~~~~~~y~~~~~~---~~~~~-----------------~----~~~~~~-~~ 92 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYL--LNQRTAIYIPLSKS---QYFSP-----------------A----VLENLE-QQ 92 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEeeHHHh---hhhhH-----------------H----HHhhcc-cC
Confidence 5789999999999999999998532 23345567765311 00000 1 111111 33
Q ss_pred eeEEeccCCCCC-hhhHHH-HHhhhcCC-CCCcEEE-Eeccc---------HHHHhhccccceEEccCCCCchhHHHHHH
Q 003367 186 FLLVLDDVWSGN-PTKWEE-LVSTLKFG-SPESRIL-VTTRK---------EDVAKMMRTTSMILLAKLPDNDCWSLFSQ 252 (826)
Q Consensus 186 ~LlVlDdv~~~~-~~~~~~-l~~~~~~~-~~~s~ii-vTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 252 (826)
-+||+||+|... ..+|+. +...+... ..|..+| +|++. +.+...+.....++++++++++.++++.+
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~ 172 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQR 172 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHH
Confidence 599999998632 345553 33334322 2355554 45543 34555555567899999999999999999
Q ss_pred hhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHHhh
Q 003367 253 IAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTSGS 289 (826)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~ 289 (826)
.+....-..+ +++.+-|++.+.|..-++..+-.
T Consensus 173 ~a~~~~l~l~----~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 173 NAYQRGIELS----DEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHHcCCCCC----HHHHHHHHHhccCCHHHHHHHHH
Confidence 8875433222 56778899999887766555433
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=4.8e-10 Score=114.12 Aligned_cols=116 Identities=22% Similarity=0.334 Sum_probs=69.0
Q ss_pred CCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCC--CCCCCCCCccceeeccccc--cceEeCcccccCC
Q 003367 648 LQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQ--LPSLGRLPSLESLVVEALS--SVRRVGNEFLGIE 723 (826)
Q Consensus 648 l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~--l~~l~~l~~L~~L~L~~~~--~l~~~~~~~~~~~ 723 (826)
+..+|+|+.|+|.+|............+..|+.|+|++|++... .+..+.||.|..|.++.+. .+...+.+..
T Consensus 218 ~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~--- 294 (505)
T KOG3207|consen 218 LLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESL--- 294 (505)
T ss_pred HHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccch---
Confidence 33467777777777743222133334567777888887776543 3467777777777776432 1111111111
Q ss_pred CCccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCCC
Q 003367 724 SDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCH 778 (826)
Q Consensus 724 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 778 (826)
.....||+|++|.+..| ++.+|.. -..+..+++|+.|.+..+.
T Consensus 295 -------~kt~~f~kL~~L~i~~N-~I~~w~s----l~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 295 -------DKTHTFPKLEYLNISEN-NIRDWRS----LNHLRTLENLKHLRITLNY 337 (505)
T ss_pred -------hhhcccccceeeecccC-ccccccc----cchhhccchhhhhhccccc
Confidence 11236888999998888 4666654 3445567788888776644
No 38
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.84 E-value=5.4e-08 Score=108.76 Aligned_cols=214 Identities=11% Similarity=0.097 Sum_probs=123.8
Q ss_pred cCCccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccc---cCCC--cEEEEEeCCCCCHH
Q 003367 76 DVSKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVD---AHFD--KRIWVCFSDPVDEI 150 (826)
Q Consensus 76 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~f~--~~~wv~~~~~~~~~ 150 (826)
.++.+.|||+|+++|...|...-. +.....++.|+|++|.|||+.++.|.+..+.. .... .+++|.+....+..
T Consensus 753 VPD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~ 831 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPN 831 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHH
Confidence 346799999999999998865422 12233678899999999999999998754211 1111 35677777777888
Q ss_pred HHHHHHHHHhcccchh-hhhHHHHHHHHHHHh-c--CCceeEEeccCCCCChhhHHHHHhhhcC-CCCCcEEEE--eccc
Q 003367 151 RVAKAILESFRDVVSA-VAAFDTLLRHIEKSV-K--GKKFLLVLDDVWSGNPTKWEELVSTLKF-GSPESRILV--TTRK 223 (826)
Q Consensus 151 ~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l-~--~k~~LlVlDdv~~~~~~~~~~l~~~~~~-~~~~s~iiv--TtR~ 223 (826)
.++..|++++....+. .....+....+...+ . +...+||||+|+.-....-+.+...+.+ ...+++|+| ++..
T Consensus 832 sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 832 AAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCc
Confidence 8999999888543221 112223333344333 1 2345899999953221121334433332 234556554 3322
Q ss_pred HH--------HHhhccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHHhhhh
Q 003367 224 ED--------VAKMMRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTSGSLL 291 (826)
Q Consensus 224 ~~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l 291 (826)
.. +...+. ...+...+.+.++..+++..++.......++..++-+|+.++...|-.-.||.++-.+.
T Consensus 912 lDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 912 MDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 11 111121 22466799999999999999875432222323333444444444444556665554433
No 39
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.82 E-value=9.6e-08 Score=112.41 Aligned_cols=266 Identities=17% Similarity=0.211 Sum_probs=157.2
Q ss_pred ccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEE---eCCCCCH---HHH
Q 003367 79 KVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVC---FSDPVDE---IRV 152 (826)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~---~~~~~~~---~~~ 152 (826)
+++||+.+++.|...+..... ....++.+.|..|||||+|+++|.... ...+...+--. ...+... ...
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~---g~~~~~lv~G~sGIGKsalv~ev~~~i--~~~~~~~i~~~f~q~~~~ipl~~lvq~ 75 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSK---GRGEVVLVAGESGIGKSALVNEVHKPI--TQQRGYFIKGKFDQFERNIPLSPLVQA 75 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhC---CCeEEEEEeecCCCcHHHHHHHHHHHH--hccceeeeHhhcccccCCCchHHHHHH
Confidence 378999999999999976543 345699999999999999999999843 33322221111 2222221 223
Q ss_pred HHHHHHHh-------------------cccchhh----------------------hhHH-----HHHHHHHHHh-cCCc
Q 003367 153 AKAILESF-------------------RDVVSAV----------------------AAFD-----TLLRHIEKSV-KGKK 185 (826)
Q Consensus 153 ~~~i~~~l-------------------~~~~~~~----------------------~~~~-----~~~~~l~~~l-~~k~ 185 (826)
+++++.++ +...... ...+ .....+.... +.++
T Consensus 76 ~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~p 155 (849)
T COG3899 76 FRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHP 155 (849)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCC
Confidence 33333333 1100000 0000 1222333333 3569
Q ss_pred eeEEeccCCCCChhhHHHHHhhhcCCC------CCcEEEEecccH--HHHhhccccceEEccCCCCchhHHHHHHhhhcC
Q 003367 186 FLLVLDDVWSGNPTKWEELVSTLKFGS------PESRILVTTRKE--DVAKMMRTTSMILLAKLPDNDCWSLFSQIAFSG 257 (826)
Q Consensus 186 ~LlVlDdv~~~~~~~~~~l~~~~~~~~------~~s~iivTtR~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~ 257 (826)
.++|+||+++.|....+-+........ ...-.+.|.+.. .+.........+.+.||+..+...+........
T Consensus 156 lVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~ 235 (849)
T COG3899 156 LVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT 235 (849)
T ss_pred eEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc
Confidence 999999997777666655544433322 011223333332 122222335689999999999999998775432
Q ss_pred CCcccchhhHHHHHHHHHhcCCCchhHHHHhhhhcCC------cCHHHHHHhhhhhcccccccCcCcchhhhhhccCCcH
Q 003367 258 RTTEECQKLTDIGRMIADKCNGLPLAAKTSGSLLSLK------TTMEQWKTVLDSEIWKVEDVEKGLLPPLVISYFDLPS 331 (826)
Q Consensus 258 ~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~------~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~ 331 (826)
.. ...+..+.|+++..|+|+.+..+-..+... .+...|+.-... . ......+.+...+..-.+.||.
T Consensus 236 ~~-----~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~-i-~~~~~~~~vv~~l~~rl~kL~~ 308 (849)
T COG3899 236 KL-----LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS-L-GILATTDAVVEFLAARLQKLPG 308 (849)
T ss_pred cc-----ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh-c-CCchhhHHHHHHHHHHHhcCCH
Confidence 22 225677889999999999999988887653 123333322111 0 1111111234457888999999
Q ss_pred HHHHHhhhhccCCCCceeCHHHHHHHH
Q 003367 332 IVRRCFSYCAIFPKGYEINKDHLIKLW 358 (826)
Q Consensus 332 ~~k~~fl~~a~fp~~~~i~~~~li~~w 358 (826)
..|+..-..||+...+ +.+.|...+
T Consensus 309 ~t~~Vl~~AA~iG~~F--~l~~La~l~ 333 (849)
T COG3899 309 TTREVLKAAACIGNRF--DLDTLAALA 333 (849)
T ss_pred HHHHHHHHHHHhCccC--CHHHHHHHH
Confidence 9999999999997665 455555444
No 40
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.82 E-value=3.6e-08 Score=100.31 Aligned_cols=152 Identities=20% Similarity=0.294 Sum_probs=94.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHH-HHHhc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHI-EKSVK 182 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~l~ 182 (826)
.+.-..+||++|+||||||+.++. .....| ..++...+-.+-++.++ +.- +....
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdlr~i~-----------------e~a~~~~~~ 102 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDLREII-----------------EEARKNRLL 102 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHHHHHH-----------------HHHHHHHhc
Confidence 566678999999999999999998 333444 23333322222222222 222 22335
Q ss_pred CCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEE--ecccHHH---HhhccccceEEccCCCCchhHHHHHHhhhcC
Q 003367 183 GKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILV--TTRKEDV---AKMMRTTSMILLAKLPDNDCWSLFSQIAFSG 257 (826)
Q Consensus 183 ~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iiv--TtR~~~v---~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~ 257 (826)
+++.+|++|.|+.-+..+-+.++..+ ..|.-|+| ||-++.. ........++++++|+.++-.+++.+.+...
T Consensus 103 gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~ 179 (436)
T COG2256 103 GRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDE 179 (436)
T ss_pred CCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhh
Confidence 89999999999887766656555444 45666666 5555532 1122346799999999999999998843222
Q ss_pred CCccc--ch-hhHHHHHHHHHhcCCCch
Q 003367 258 RTTEE--CQ-KLTDIGRMIADKCNGLPL 282 (826)
Q Consensus 258 ~~~~~--~~-~~~~~~~~i~~~~~glPL 282 (826)
...-. .. -.+++.+.++..++|---
T Consensus 180 ~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 180 ERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred hcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 11111 01 124466778888888654
No 41
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.80 E-value=6.5e-08 Score=92.05 Aligned_cols=179 Identities=21% Similarity=0.271 Sum_probs=100.4
Q ss_pred CCccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHH
Q 003367 77 VSKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAI 156 (826)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 156 (826)
-.+|||.+.-++.+.-++..... .+..+..+.+||++|+||||||.-+++.. ...|. +.+.. .....
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e~--~~~~~---~~sg~-~i~k~------ 89 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANEL--GVNFK---ITSGP-AIEKA------ 89 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHHC--T--EE---EEECC-C--SC------
T ss_pred HHHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhcc--CCCeE---eccch-hhhhH------
Confidence 35799999988887655542211 12356789999999999999999999943 33332 22221 11100
Q ss_pred HHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCC--------CCC-----------cEE
Q 003367 157 LESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFG--------SPE-----------SRI 217 (826)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~--------~~~-----------s~i 217 (826)
.++...+.. + +++-+|.+|+++.-+..+-+.+...+..+ +++ +-|
T Consensus 90 --------------~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTli 153 (233)
T PF05496_consen 90 --------------GDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLI 153 (233)
T ss_dssp --------------HHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEE
T ss_pred --------------HHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEe
Confidence 111111111 1 24558888999887766666676665432 112 233
Q ss_pred EEecccHHHHhhccc--cceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHHh
Q 003367 218 LVTTRKEDVAKMMRT--TSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTSG 288 (826)
Q Consensus 218 ivTtR~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~ 288 (826)
=.|||...+...+.. .-..++...+.+|-.++..+.+..-....+ .+.+.+|+++|.|-|--..-+-
T Consensus 154 gATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~----~~~~~~Ia~rsrGtPRiAnrll 222 (233)
T PF05496_consen 154 GATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEID----EDAAEEIARRSRGTPRIANRLL 222 (233)
T ss_dssp EEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-----HHHHHHHHHCTTTSHHHHHHHH
T ss_pred eeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcC----HHHHHHHHHhcCCChHHHHHHH
Confidence 358887655544433 234579999999999999887755443333 6788999999999996544433
No 42
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.76 E-value=1e-07 Score=104.24 Aligned_cols=176 Identities=19% Similarity=0.270 Sum_probs=105.6
Q ss_pred CccccchHHHHH---HHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHH
Q 003367 78 SKVRGRDEEKKT---IIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAK 154 (826)
Q Consensus 78 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 154 (826)
.++||++..+.. +..++... ....+.|+|++|+||||+|+.+++.. ...| +.++......+..+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~~--~~~~-----~~l~a~~~~~~~ir 78 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGAT--DAPF-----EALSAVTSGVKDLR 78 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHHh--CCCE-----EEEecccccHHHHH
Confidence 458888877655 77777432 44578899999999999999999843 2222 22222111111111
Q ss_pred HHHHHhcccchhhhhHHHHHHHHHHH-hcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEE--ecccHH--HHh-
Q 003367 155 AILESFRDVVSAVAAFDTLLRHIEKS-VKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILV--TTRKED--VAK- 228 (826)
Q Consensus 155 ~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iiv--TtR~~~--v~~- 228 (826)
.+ .+..... ..+++.+|++|++|.-...+.+.+...+.. |..++| ||.+.. +..
T Consensus 79 ~i-----------------i~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 79 EV-----------------IEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPA 138 (413)
T ss_pred HH-----------------HHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHH
Confidence 11 1111111 246788999999987666666666665543 444444 344332 111
Q ss_pred hccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHH
Q 003367 229 MMRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTS 287 (826)
Q Consensus 229 ~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 287 (826)
.......+.+.+++.++..+++.+.+....... ..-..+..+.|++.|+|.|..+..+
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 112246789999999999999988653211100 0122466778999999998765443
No 43
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.75 E-value=1.1e-07 Score=95.60 Aligned_cols=170 Identities=15% Similarity=0.154 Sum_probs=101.5
Q ss_pred chHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcc
Q 003367 83 RDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRD 162 (826)
Q Consensus 83 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 162 (826)
.+..++.+.+++... ....|.|+|..|+|||+||+.+++... ......+++++..-.. ..
T Consensus 22 ~~~~~~~l~~~~~~~------~~~~lll~G~~G~GKT~la~~~~~~~~--~~~~~~~~i~~~~~~~------~~------ 81 (226)
T TIGR03420 22 NAELLAALRQLAAGK------GDRFLYLWGESGSGKSHLLQAACAAAE--ERGKSAIYLPLAELAQ------AD------ 81 (226)
T ss_pred cHHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEeHHHHHH------hH------
Confidence 455677777776432 346799999999999999999998432 2333455665433110 00
Q ss_pred cchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCChh-hH-HHHHhhhcC-CCCCcEEEEecccHH---------HHhhc
Q 003367 163 VVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPT-KW-EELVSTLKF-GSPESRILVTTRKED---------VAKMM 230 (826)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-~~-~~l~~~~~~-~~~~s~iivTtR~~~---------v~~~~ 230 (826)
... ...+. +.-+||+||++.-... .| +.+...+.. ...+.++|+|++... +...+
T Consensus 82 --------~~~----~~~~~-~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 82 --------PEV----LEGLE-QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred --------HHH----Hhhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 001 11122 2348999999653322 23 334443332 123457888887532 12222
Q ss_pred cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHHhh
Q 003367 231 RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTSGS 289 (826)
Q Consensus 231 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~ 289 (826)
.....+++.+++.++...++...+-....... .+..+.+++.+.|.|..+..+..
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~----~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRGLQLP----DEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhccCCHHHHHHHHH
Confidence 22457899999999999998876533222122 45667788889999987766643
No 44
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.74 E-value=6.3e-07 Score=100.14 Aligned_cols=194 Identities=19% Similarity=0.261 Sum_probs=117.9
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
.++||.+..++.|..++.... -...+.++|..|+||||+|+.+++.......++. ...........|.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~-------~PCG~C~sCr~I~ 83 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS-------QPCGVCRACREID 83 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC-------CCCcccHHHHHHh
Confidence 468999999999999986432 3456679999999999999999885432211100 0111111111111
Q ss_pred HH-----hcccchhhhhHHHHHHHHHHH----hcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccHH-HH
Q 003367 158 ES-----FRDVVSAVAAFDTLLRHIEKS----VKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKED-VA 227 (826)
Q Consensus 158 ~~-----l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~~-v~ 227 (826)
.. +.........++++.+.+... ..++.-++|||+++.-+...+..++..+.......++|+||++.. +.
T Consensus 84 ~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp 163 (830)
T PRK07003 84 EGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIP 163 (830)
T ss_pred cCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhcc
Confidence 00 000000111122222222221 134556899999977777788888888877667788888777643 32
Q ss_pred hh-ccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCc-hhHHHH
Q 003367 228 KM-MRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLP-LAAKTS 287 (826)
Q Consensus 228 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glP-Lal~~~ 287 (826)
.. ..-...+.++.++.++..+.+.+.+.......+ .+..+.|++.++|.. -|+..+
T Consensus 164 ~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id----~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 164 VTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFE----PQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred chhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 22 222468999999999999999887654332222 566778999998865 455543
No 45
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.74 E-value=6.9e-09 Score=113.92 Aligned_cols=183 Identities=36% Similarity=0.413 Sum_probs=131.2
Q ss_pred hhccCCCCcEEeccccccccccccccccccccCCC-CccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhh
Q 003367 457 LFDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLK-HLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGI 535 (826)
Q Consensus 457 ~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~-~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i 535 (826)
....++.+..|++. .+ .+..+|.....+. +|++|++++|. +..+|..+..+++|+.|++++|. +..+|...
T Consensus 111 ~~~~~~~l~~L~l~-----~n-~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~ 182 (394)
T COG4886 111 ELLELTNLTSLDLD-----NN-NITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND-LSDLPKLL 182 (394)
T ss_pred hhhcccceeEEecC-----Cc-ccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch-hhhhhhhh
Confidence 34555789999998 44 6777887777775 99999999998 88888779999999999999998 77788777
Q ss_pred hcccCCCeeeecCcccccCCccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhh
Q 003367 536 AKLINLRHLINEGTPLLYLPKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAK 615 (826)
Q Consensus 536 ~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~ 615 (826)
+.+++|+.|++++|.+..+|..++.+..|++|.+..+..... ...+..+.
T Consensus 183 ~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~---~~~~~~~~--------------------------- 232 (394)
T COG4886 183 SNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIEL---LSSLSNLK--------------------------- 232 (394)
T ss_pred hhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceec---chhhhhcc---------------------------
Confidence 789999999999999999998877777788888777642111 11111111
Q ss_pred ccCCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC
Q 003367 616 LESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP 693 (826)
Q Consensus 616 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~ 693 (826)
.+..+.+..+.+ ...+..+..+++++.|++++|.+..+ +. ++.+.+|+.|+++++.+...++
T Consensus 233 -----~l~~l~l~~n~~---------~~~~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 233 -----NLSGLELSNNKL---------EDLPESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred -----cccccccCCcee---------eeccchhccccccceecccccccccc-cc-ccccCccCEEeccCccccccch
Confidence 111122111111 11133455667788888888888876 43 7888888888888888776666
No 46
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.72 E-value=2.2e-08 Score=90.94 Aligned_cols=118 Identities=23% Similarity=0.272 Sum_probs=80.3
Q ss_pred CccEEEEEecCCCcHHHHHHHHhccccccc---CCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHH
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDA---HFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKS 180 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 180 (826)
+-+++.|+|.+|+|||+++++++++..... .-..++|+.+....+...+...|+++++.......+.+++.+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 346899999999999999999998542110 02456799988888999999999999987765545556666777777
Q ss_pred hcCCc-eeEEeccCCCC-ChhhHHHHHhhhcCCCCCcEEEEeccc
Q 003367 181 VKGKK-FLLVLDDVWSG-NPTKWEELVSTLKFGSPESRILVTTRK 223 (826)
Q Consensus 181 l~~k~-~LlVlDdv~~~-~~~~~~~l~~~~~~~~~~s~iivTtR~ 223 (826)
+...+ .+||+|+++.- +...++.+..... ..+.++|+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 75544 59999999543 4344444544333 566778877765
No 47
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=4.5e-07 Score=100.22 Aligned_cols=180 Identities=18% Similarity=0.221 Sum_probs=115.7
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhccccccc-------------------CCCcE
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDA-------------------HFDKR 138 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~ 138 (826)
.+++|.+...+.|..++.... -...+.++|+.|+||||+|+.+++...... .|..+
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 468999999999999986432 346779999999999999999988432211 11111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHH-HhcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEE
Q 003367 139 IWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEK-SVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRI 217 (826)
Q Consensus 139 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~i 217 (826)
+.++.+.... ..++.++...+.. -..++.-++|+|+++.-+......+...+.....+.++
T Consensus 90 iEIDAAs~~~------------------VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~F 151 (702)
T PRK14960 90 IEIDAASRTK------------------VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKF 151 (702)
T ss_pred EEecccccCC------------------HHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEE
Confidence 2222211111 1112222221111 12356679999999776777788888888776667778
Q ss_pred EEecccH-HHHhh-ccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhH
Q 003367 218 LVTTRKE-DVAKM-MRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAA 284 (826)
Q Consensus 218 ivTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal 284 (826)
|++|.+. .+... ......+++++++.++..+.+.+.+...+...+ .+....|++.++|.+..+
T Consensus 152 ILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id----~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 152 LFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD----QDAIWQIAESAQGSLRDA 216 (702)
T ss_pred EEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 7777653 22211 233568999999999999988887654333222 456778999999977543
No 48
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=7.7e-08 Score=106.21 Aligned_cols=194 Identities=18% Similarity=0.227 Sum_probs=117.1
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHH-
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAI- 156 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i- 156 (826)
.+++|.+..++.|..++.... -...+.++|++|+||||+|+.+++.....+.+...+|.|.+. ..+....
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc----~~i~~~~h 84 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC----LAVRRGAH 84 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh----HHHhcCCC
Confidence 458999999999988886532 335669999999999999999998653222222222322110 0000000
Q ss_pred --HHHhcc-cchhhhhHHHHHHHHHH-HhcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEeccc-HHHHhhc-
Q 003367 157 --LESFRD-VVSAVAAFDTLLRHIEK-SVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRK-EDVAKMM- 230 (826)
Q Consensus 157 --~~~l~~-~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~-~~v~~~~- 230 (826)
+..+.. ......++.++.+.+.. -+.+++-++|+|+++......++.+...+........+|++|.. ..+...+
T Consensus 85 ~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~ 164 (504)
T PRK14963 85 PDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTIL 164 (504)
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHh
Confidence 000000 00111222222222221 12356679999999776777788888888776566666655543 3332222
Q ss_pred cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhH
Q 003367 231 RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAA 284 (826)
Q Consensus 231 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal 284 (826)
.....+++.+++.++..+.+.+.+...+...+ .+....|++.++|.+--+
T Consensus 165 SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~----~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 165 SRTQHFRFRRLTEEEIAGKLRRLLEAEGREAE----PEALQLVARLADGAMRDA 214 (504)
T ss_pred cceEEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 22568999999999999999887654433222 466788999999988544
No 49
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.69 E-value=4.2e-09 Score=101.86 Aligned_cols=135 Identities=21% Similarity=0.245 Sum_probs=96.4
Q ss_pred CCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCCCCCC
Q 003367 618 SKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLPSLGR 697 (826)
Q Consensus 618 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~ 697 (826)
..+.|..+++++|.+ ..+-++..-.|.++.|+++.|.+... ..+..+++|+.|||++|.+......-..
T Consensus 282 TWq~LtelDLS~N~I---------~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~K 350 (490)
T KOG1259|consen 282 TWQELTELDLSGNLI---------TQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLK 350 (490)
T ss_pred hHhhhhhccccccch---------hhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhh
Confidence 345566777777763 33445566678999999999998875 4488899999999999988765555456
Q ss_pred CCccceeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCC
Q 003367 698 LPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGC 777 (826)
Q Consensus 698 l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c 777 (826)
|.+.++|.|+++. -..+.| .+.+-+|..|++++| +++.... ...++++|+|+.|.|.+|
T Consensus 351 LGNIKtL~La~N~-----iE~LSG-----------L~KLYSLvnLDl~~N-~Ie~lde----V~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 351 LGNIKTLKLAQNK-----IETLSG-----------LRKLYSLVNLDLSSN-QIEELDE----VNHIGNLPCLETLRLTGN 409 (490)
T ss_pred hcCEeeeehhhhh-----Hhhhhh-----------hHhhhhheecccccc-chhhHHH----hcccccccHHHHHhhcCC
Confidence 7788888888433 112222 346778899999988 4555443 456889999999999997
Q ss_pred CCCCCCCC
Q 003367 778 HKLKALPD 785 (826)
Q Consensus 778 ~~l~~lp~ 785 (826)
| +..+|.
T Consensus 410 P-l~~~vd 416 (490)
T KOG1259|consen 410 P-LAGSVD 416 (490)
T ss_pred C-ccccch
Confidence 7 555553
No 50
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.69 E-value=6e-10 Score=116.96 Aligned_cols=192 Identities=27% Similarity=0.273 Sum_probs=146.5
Q ss_pred CCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCC
Q 003367 462 TCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINL 541 (826)
Q Consensus 462 ~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L 541 (826)
..-...||+ .+ .+..+|..++.+..|..|.|..|. +..+|..++++..|.+|||+.|+ +..+|..+..|+ |
T Consensus 75 tdt~~aDls-----rN-R~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-L 145 (722)
T KOG0532|consen 75 TDTVFADLS-----RN-RFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-L 145 (722)
T ss_pred cchhhhhcc-----cc-ccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-c
Confidence 334456777 44 677889999999999999999998 88999999999999999999998 788999998877 9
Q ss_pred CeeeecCcccccCCccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCCc
Q 003367 542 RHLINEGTPLLYLPKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKH 621 (826)
Q Consensus 542 ~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~ 621 (826)
+.|.+++|+++.+|..++.+..|..|+.+.|....-.+. +..+..
T Consensus 146 kvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsq-----------------------------------l~~l~s 190 (722)
T KOG0532|consen 146 KVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQ-----------------------------------LGYLTS 190 (722)
T ss_pred eeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHH-----------------------------------hhhHHH
Confidence 999999999999999999888999998877765222111 222223
Q ss_pred CCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC----CCCC
Q 003367 622 LVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP----SLGR 697 (826)
Q Consensus 622 L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~----~l~~ 697 (826)
|+.|.+..|.+ ..+++.+. .-.|..|++++|++..+ |-.|.+|+.|++|.|.+|.+.. .| .-|.
T Consensus 191 lr~l~vrRn~l---------~~lp~El~-~LpLi~lDfScNkis~i-Pv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGk 258 (722)
T KOG0532|consen 191 LRDLNVRRNHL---------EDLPEELC-SLPLIRLDFSCNKISYL-PVDFRKMRHLQVLQLENNPLQS-PPAQICEKGK 258 (722)
T ss_pred HHHHHHhhhhh---------hhCCHHHh-CCceeeeecccCceeec-chhhhhhhhheeeeeccCCCCC-ChHHHHhccc
Confidence 33333333331 22334444 23589999999999998 9999999999999999999864 44 2345
Q ss_pred CCccceeecccc
Q 003367 698 LPSLESLVVEAL 709 (826)
Q Consensus 698 l~~L~~L~L~~~ 709 (826)
..-.++|+..-|
T Consensus 259 VHIFKyL~~qA~ 270 (722)
T KOG0532|consen 259 VHIFKYLSTQAC 270 (722)
T ss_pred eeeeeeecchhc
Confidence 555678887766
No 51
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=7.2e-07 Score=95.62 Aligned_cols=190 Identities=18% Similarity=0.235 Sum_probs=112.4
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
.+++|.+..++.+...+.... -...+.++|+.|+||||+|+.+++.......+. ..+.........+.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~ 83 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIE 83 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHh
Confidence 468999999999999886432 345678999999999999999998542111110 00000000011110
Q ss_pred HH----hcc-c---chhhhhHHHHHHHHHHH-hcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccH-HHH
Q 003367 158 ES----FRD-V---VSAVAAFDTLLRHIEKS-VKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKE-DVA 227 (826)
Q Consensus 158 ~~----l~~-~---~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~-~v~ 227 (826)
.. +.. . .....+..++.+.+... ..+++-++|+|+++.-+...++.+...+.......++|++|.+. .+.
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~ 163 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIP 163 (363)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhh
Confidence 00 000 0 00111122222222111 13456699999997666667788888877666677777766543 333
Q ss_pred hhc-cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchh
Q 003367 228 KMM-RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLA 283 (826)
Q Consensus 228 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLa 283 (826)
..+ .....+++.+++.++..+.+...+...+...+ .+.++.|++.++|.|-.
T Consensus 164 ~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~----~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 164 KTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTD----EYALKLIAYHAHGSMRD 216 (363)
T ss_pred HHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHH
Confidence 222 22468999999999999888876644332122 45677899999998864
No 52
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=4.7e-07 Score=103.22 Aligned_cols=181 Identities=18% Similarity=0.215 Sum_probs=116.7
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCC-------------------CcE
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHF-------------------DKR 138 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-------------------~~~ 138 (826)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++........ .-+
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 468999999999999886432 23455899999999999999999854321111 011
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHH-HhcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEE
Q 003367 139 IWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEK-SVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRI 217 (826)
Q Consensus 139 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~i 217 (826)
+++..... ....++.++.+.+.. -..+++-++|||+++.-....++.++..+.......++
T Consensus 91 iEidAas~------------------~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrF 152 (944)
T PRK14949 91 IEVDAASR------------------TKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKF 152 (944)
T ss_pred EEeccccc------------------cCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEE
Confidence 11111100 111222223222221 12467789999999877788888888888776666776
Q ss_pred EEeccc-HHHHhh-ccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHH
Q 003367 218 LVTTRK-EDVAKM-MRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAK 285 (826)
Q Consensus 218 ivTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~ 285 (826)
|++|.+ ..+... ......|.+++++.++..+.+.+.+-...... ..+.++.|++.++|.|--+.
T Consensus 153 ILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~----edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 153 LLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPF----EAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred EEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHH
Confidence 666554 334322 22246899999999999999888764322211 24667889999999886433
No 53
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.68 E-value=4.8e-07 Score=97.06 Aligned_cols=196 Identities=17% Similarity=0.171 Sum_probs=111.6
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCC-cEEEEEeCCCCCHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFD-KRIWVCFSDPVDEIRVAKAI 156 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 156 (826)
..++|++..++.+..++... ..+.+.++|+.|+||||+|+.+++.... ..+. ..++++++...+. ....+
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~~-~~~~~~~~~i~~~~~~~~--~~~~~ 85 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELYG-DPWENNFTEFNVADFFDQ--GKKYL 85 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhcC-cccccceEEechhhhhhc--chhhh
Confidence 56899999999999988543 3346889999999999999999884321 1121 2344444321100 00000
Q ss_pred H------HHhccc----chhhhhHHHHHHHHHHHh--cCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccH
Q 003367 157 L------ESFRDV----VSAVAAFDTLLRHIEKSV--KGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKE 224 (826)
Q Consensus 157 ~------~~l~~~----~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~ 224 (826)
. ..++.. .........+.+...... .+.+-+||+||+..-.......+...+......+++|+|+...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 86 VEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred hcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 0 000000 000111111111221211 2345589999996544444555666665555567788777543
Q ss_pred -HHHhhc-cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHH
Q 003367 225 -DVAKMM-RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKT 286 (826)
Q Consensus 225 -~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~ 286 (826)
.+...+ .....+++.+++.++...++...+........ .+..+.+++.++|.+-.+..
T Consensus 166 ~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~----~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 166 SKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD----DDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 222222 22357889999999998888887644332222 56777889999887655433
No 54
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=5.3e-07 Score=99.35 Aligned_cols=197 Identities=16% Similarity=0.216 Sum_probs=115.3
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
.++||.+..++.|..++.... -...+.++|..|+||||+|+.+++.......-... -+ .+.+.........|.
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~-g~-~~~PCG~C~sC~~I~ 88 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEG-GI-TAQPCGQCRACTEID 88 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccc-cC-CCCCCcccHHHHHHH
Confidence 468999999999999986542 34567899999999999999998754321000000 00 000000011111111
Q ss_pred H-----HhcccchhhhhHHHHHHHHHHH----hcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEec-ccHHHH
Q 003367 158 E-----SFRDVVSAVAAFDTLLRHIEKS----VKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTT-RKEDVA 227 (826)
Q Consensus 158 ~-----~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTt-R~~~v~ 227 (826)
. -+.........++++.+.+... ..++.-++|||+++.-+...+..++..+.....+.++|++| ....+.
T Consensus 89 aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 89 AGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred cCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 0 0000000111223322222221 24566799999998777778888888887655566655544 444444
Q ss_pred hhcc-ccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHH
Q 003367 228 KMMR-TTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAK 285 (826)
Q Consensus 228 ~~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~ 285 (826)
..+. -...+.++.++.++..+.+.+.+.......+ .+..+.|++.++|.|.-..
T Consensus 169 pTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d----~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE----VNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred hHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 3322 2568999999999999988877643322221 4556789999999986443
No 55
>PF13173 AAA_14: AAA domain
Probab=98.67 E-value=8.3e-08 Score=86.29 Aligned_cols=119 Identities=24% Similarity=0.339 Sum_probs=78.7
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCc
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKK 185 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 185 (826)
+++.|.|+.|+||||++++++.+.. ....++++++.+....... ..+ ..+.+.+....++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~----------------~~~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA----------------DPD-LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh----------------hhh-hHHHHHHhhccCC
Confidence 6899999999999999999998543 2345677776653221100 000 2233333344578
Q ss_pred eeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccHHHHhh------ccccceEEccCCCCchh
Q 003367 186 FLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKEDVAKM------MRTTSMILLAKLPDNDC 246 (826)
Q Consensus 186 ~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~~v~~~------~~~~~~~~l~~L~~~~~ 246 (826)
.+|+||++. ....|......+....+..+|++|+........ .+....+++.||+..|.
T Consensus 63 ~~i~iDEiq--~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQ--YLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhh--hhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 899999994 446777776666655567899999998765532 11234678999987663
No 56
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.67 E-value=8e-07 Score=97.75 Aligned_cols=193 Identities=18% Similarity=0.233 Sum_probs=115.8
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCc-EEEEEeCCCCCHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDK-RIWVCFSDPVDEIRVAKAI 156 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i 156 (826)
.+++|.+..++.+...+.... -...+.++|+.|+||||+|+.+++.......... ..+..+.. ......+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~----C~~C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ----CTNCISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC----ChHHHHH
Confidence 468999999999988775432 3457889999999999999999985432211100 00000000 0001111
Q ss_pred HHH-------hcc-cchhhhhHHHHHHHHHH-HhcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEE-ecccHHH
Q 003367 157 LES-------FRD-VVSAVAAFDTLLRHIEK-SVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILV-TTRKEDV 226 (826)
Q Consensus 157 ~~~-------l~~-~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iiv-TtR~~~v 226 (826)
... +.. ......++.++.+.... -+.+++-++|+|+++.-+...+..+...+....+.+.+|+ ||+...+
T Consensus 92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 100 000 00111222222222211 1246777999999987777888899888877666666664 5554455
Q ss_pred Hhhcc-ccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchh
Q 003367 227 AKMMR-TTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLA 283 (826)
Q Consensus 227 ~~~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLa 283 (826)
...+. ....+++.+++.++....+...+...+...+ .+..+.|++.++|.+--
T Consensus 172 ~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie----~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 172 PATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD----IEALRIIAYKSEGSARD 225 (507)
T ss_pred hHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHH
Confidence 44332 2457899999999999999888754433222 45567799999997743
No 57
>PRK04195 replication factor C large subunit; Provisional
Probab=98.64 E-value=3.3e-06 Score=94.28 Aligned_cols=247 Identities=17% Similarity=0.162 Sum_probs=138.6
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
.+++|.++.++++.+|+..... +...+.+.|+|++|+||||+|++++++.. |+ ++.++.+...+.. ....++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~-~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTAD-VIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHH-HHHHHH
Confidence 5699999999999999865331 12367899999999999999999999542 22 3334444432222 222222
Q ss_pred HHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCCh----hhHHHHHhhhcCCCCCcEEEEecccHH-HHh-hc-
Q 003367 158 ESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNP----TKWEELVSTLKFGSPESRILVTTRKED-VAK-MM- 230 (826)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~l~~~~~~~~~~s~iivTtR~~~-v~~-~~- 230 (826)
...... ......++-+||+|+++.-.. ..+..+...+.. .+..||+|+.+.. ... .+
T Consensus 86 ~~~~~~--------------~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 86 GEAATS--------------GSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELR 149 (482)
T ss_pred HHhhcc--------------CcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHh
Confidence 211100 001113678999999965322 345566665553 2345666664321 111 11
Q ss_pred cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHHhhhhcCC-c--CHHHHHHhhhhh
Q 003367 231 RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTSGSLLSLK-T--TMEQWKTVLDSE 307 (826)
Q Consensus 231 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~-~--~~~~w~~~~~~~ 307 (826)
.....+.+.+++.++....+...+........ .++.+.|++.++|-.-.+......+... . +.+.-..+..
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~----~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~-- 223 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGIECD----DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR-- 223 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc--
Confidence 22457899999999998888877654433222 4667889999999766544333223222 1 2333332221
Q ss_pred cccccccCcCcchhhhhhcc-CCcHHHHHHhhhhccCCCCceeCHHHHHHHHHHcCCccc
Q 003367 308 IWKVEDVEKGLLPPLVISYF-DLPSIVRRCFSYCAIFPKGYEINKDHLIKLWMAQGYLKV 366 (826)
Q Consensus 308 ~~~~~~~~~~i~~~l~~sy~-~L~~~~k~~fl~~a~fp~~~~i~~~~li~~w~a~g~i~~ 366 (826)
.+....++.++..-+. .-.......+.. ..++. ..+-.|+.+++...
T Consensus 224 ----~d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 ----RDREESIFDALDAVFKARNADQALEASYD-------VDEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred ----CCCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCH-HHHHHHHHhccccc
Confidence 1222345666664443 223333333222 12233 34568999998764
No 58
>PLN03025 replication factor C subunit; Provisional
Probab=98.64 E-value=4.5e-07 Score=95.69 Aligned_cols=181 Identities=14% Similarity=0.183 Sum_probs=108.7
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCC-cEEEEEeCCCCCHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFD-KRIWVCFSDPVDEIRVAKAI 156 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 156 (826)
.+++|.++.++.|..++... ..+.+.++|++|+||||+|+.+++... ...|. .++-+..++..... ..+.+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccHH-HHHHH
Confidence 46889999899888877543 334577999999999999999998532 11222 12222223222221 11111
Q ss_pred HHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccH-HHHhhcc-ccc
Q 003367 157 LESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKE-DVAKMMR-TTS 234 (826)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~-~v~~~~~-~~~ 234 (826)
++.+..... ..-.++.-++|+|+++.-.......+...+......+++|+++... .+...+. ...
T Consensus 85 i~~~~~~~~-------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 85 IKMFAQKKV-------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHHHHhccc-------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 111110000 0002456799999997666556666766666555667777766542 2222111 235
Q ss_pred eEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchh
Q 003367 235 MILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLA 283 (826)
Q Consensus 235 ~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLa 283 (826)
.++++++++++....+...+-..+.... .+..+.|++.++|-.-.
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVPYV----PEGLEAIIFTADGDMRQ 196 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHH
Confidence 7899999999999888887654333222 45677889999886643
No 59
>PTZ00202 tuzin; Provisional
Probab=98.64 E-value=2.7e-06 Score=88.52 Aligned_cols=169 Identities=12% Similarity=0.184 Sum_probs=105.4
Q ss_pred ccccCCccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHH
Q 003367 73 SVIDVSKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRV 152 (826)
Q Consensus 73 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 152 (826)
.+.+.+.|+||++|..++...|...+. ...+++.|+|++|+|||||++.+..... + ...+++. .+..++
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNp---rg~eEl 325 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDV---RGTEDT 325 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECC---CCHHHH
Confidence 344567899999999999999975432 2456999999999999999999997432 1 1222222 277999
Q ss_pred HHHHHHHhcccchhh--hhHHHHHHHHHHHh-c-CCceeEEeccCCCCCh-hhHHHHHhhhcCCCCCcEEEEecccHHHH
Q 003367 153 AKAILESFRDVVSAV--AAFDTLLRHIEKSV-K-GKKFLLVLDDVWSGNP-TKWEELVSTLKFGSPESRILVTTRKEDVA 227 (826)
Q Consensus 153 ~~~i~~~l~~~~~~~--~~~~~~~~~l~~~l-~-~k~~LlVlDdv~~~~~-~~~~~l~~~~~~~~~~s~iivTtR~~~v~ 227 (826)
+..++.+|+...... +-.+.+.+.+.+.- . +++.+||+-==..++. ..+.+. ..+.....-|+|++----+.+.
T Consensus 326 Lr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evpleslt 404 (550)
T PTZ00202 326 LRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLESLT 404 (550)
T ss_pred HHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhhcc
Confidence 999999999643221 22233444443322 2 6777777754311111 111111 1233445567788765544332
Q ss_pred hh---ccccceEEccCCCCchhHHHHHHh
Q 003367 228 KM---MRTTSMILLAKLPDNDCWSLFSQI 253 (826)
Q Consensus 228 ~~---~~~~~~~~l~~L~~~~~~~lf~~~ 253 (826)
.. +.--..|.+..++.++|.++-.+.
T Consensus 405 ~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 405 IANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred hhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 21 122457889999999998887654
No 60
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.63 E-value=4.7e-07 Score=97.36 Aligned_cols=194 Identities=15% Similarity=0.169 Sum_probs=115.9
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++.......... ..+....+-..+...+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~sC~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTSCLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcHHHHHHccCC
Confidence 468999999999999886532 2345789999999999999999985432111000 01111111111111111
Q ss_pred HHhcc-c---chhhhhHHHHHHHHHHH-hcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecc-cHHHHhhc-
Q 003367 158 ESFRD-V---VSAVAAFDTLLRHIEKS-VKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTR-KEDVAKMM- 230 (826)
Q Consensus 158 ~~l~~-~---~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR-~~~v~~~~- 230 (826)
..+.. . .....++.++.+.+... ..++.-++|+|+++.-+...++.++..+........+|.+|. ...+...+
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 11110 0 01122223333333221 245667999999987778888888888866555556554544 34443322
Q ss_pred cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchh
Q 003367 231 RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLA 283 (826)
Q Consensus 231 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLa 283 (826)
.....|.+.+++.++..+.+.+.+...+...+ .+....|++.++|.+.-
T Consensus 170 SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e----~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 170 SRCQDFIFKKVPLSVLQDYSEKLCKIENVQYD----QEGLFWIAKKGDGSVRD 218 (484)
T ss_pred hhhheeeecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCChHHH
Confidence 22457999999999998888887644332222 56678899999998853
No 61
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=9.2e-07 Score=97.86 Aligned_cols=184 Identities=18% Similarity=0.190 Sum_probs=115.7
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhccccccc-------------------CCCcE
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDA-------------------HFDKR 138 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~ 138 (826)
.+++|.+..++.+...+.... ....+.++|+.|+||||+|+.+++...... .|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 468999999999999886432 335578999999999999999987432110 11122
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHH-hcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEE
Q 003367 139 IWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKS-VKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRI 217 (826)
Q Consensus 139 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~i 217 (826)
+++.......+ .+..++.+.+... ..+++-++|+|+++.-+...++.++..+........+
T Consensus 91 ieidaas~~gv------------------d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDAASRTGV------------------EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeecccccCH------------------HHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 22222111111 1222333332221 2466779999999776777888888888876666666
Q ss_pred EE-ecccHHHHhh-ccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCch-hHHHHh
Q 003367 218 LV-TTRKEDVAKM-MRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPL-AAKTSG 288 (826)
Q Consensus 218 iv-TtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPL-al~~~~ 288 (826)
|+ ||....+... ......+++.+++.++..+.+.+.+-..+... ..+....|++.++|.+- |+..+-
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~----e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINS----DEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 64 5444444322 22356899999999998888877654322212 24566779999999664 444443
No 62
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.62 E-value=1.2e-06 Score=93.17 Aligned_cols=180 Identities=16% Similarity=0.157 Sum_probs=108.8
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEe--CCCCCHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCF--SDPVDEIRVAKA 155 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~ 155 (826)
.+++|+++.++.+..++... ..+.+.|+|..|+||||+|+.+++..... .+. ..++.+ +...... ....
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~-~~~-~~~i~~~~~~~~~~~-~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELYGE-DWR-ENFLELNASDERGID-VIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHcCC-ccc-cceEEeccccccchH-HHHH
Confidence 46899999999999998543 33457999999999999999999853211 121 112222 2221111 1111
Q ss_pred HHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccH-HHHhhc-ccc
Q 003367 156 ILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKE-DVAKMM-RTT 233 (826)
Q Consensus 156 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~-~v~~~~-~~~ 233 (826)
.+..+.... ......+-+||+|++..-.......+...+......+++|+++... .+.... ...
T Consensus 88 ~i~~~~~~~--------------~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 88 KIKEFARTA--------------PVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHHHHHhcC--------------CCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 111110000 0001345689999996555555566777766656667777776432 121111 123
Q ss_pred ceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhH
Q 003367 234 SMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAA 284 (826)
Q Consensus 234 ~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal 284 (826)
..+++.+++.++....+...+...+.... .+..+.+++.++|.+--+
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~i~----~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGIEIT----DDALEAIYYVSEGDMRKA 200 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 46899999999998888887654332222 456778899999987653
No 63
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.60 E-value=1.1e-08 Score=101.71 Aligned_cols=148 Identities=20% Similarity=0.198 Sum_probs=89.3
Q ss_pred cCCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCC----CCcccCccCCcEEEEecCCCCCC-
Q 003367 617 ESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIIS----PSWLMSLTELRMLNLQRCGKCEQ- 691 (826)
Q Consensus 617 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~----p~~l~~l~~L~~L~L~~~~~~~~- 691 (826)
++...|+.+....|.+.+.. ....-..+..++.|+.+.++.|.+..-- -..+..+++|+.|||.+|.++..
T Consensus 154 ~~~~~Lrv~i~~rNrlen~g----a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg 229 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLENGG----ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG 229 (382)
T ss_pred CCCcceEEEEeecccccccc----HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH
Confidence 34456666666666554332 2334455666788888888888765310 12245788899999999887642
Q ss_pred ---CC-CCCCCCccceeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCCC
Q 003367 692 ---LP-SLGRLPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMP 767 (826)
Q Consensus 692 ---l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~ 767 (826)
+. .+..+++|+.|++++|. ++.-+..-... .....+|+|+.|.+.+|..-.+-...+ .......|
T Consensus 230 s~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~--------al~~~~p~L~vl~l~gNeIt~da~~~l--a~~~~ek~ 298 (382)
T KOG1909|consen 230 SVALAKALSSWPHLRELNLGDCL-LENEGAIAFVD--------ALKESAPSLEVLELAGNEITRDAALAL--AACMAEKP 298 (382)
T ss_pred HHHHHHHhcccchheeecccccc-cccccHHHHHH--------HHhccCCCCceeccCcchhHHHHHHHH--HHHHhcch
Confidence 22 56677889999998775 32222111100 001358999999999984332211101 12334588
Q ss_pred ccceeeecCCCC
Q 003367 768 RLHRLKLDGCHK 779 (826)
Q Consensus 768 ~L~~L~l~~c~~ 779 (826)
.|+.|+|++|..
T Consensus 299 dL~kLnLngN~l 310 (382)
T KOG1909|consen 299 DLEKLNLNGNRL 310 (382)
T ss_pred hhHHhcCCcccc
Confidence 999999999764
No 64
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.59 E-value=4.3e-08 Score=91.61 Aligned_cols=103 Identities=34% Similarity=0.380 Sum_probs=34.4
Q ss_pred CCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhh-cCCCCCcEEeccCCCCCcccc--hhhhc
Q 003367 461 LTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEAL-CDLCNLQTLDVSNCGNLHALP--QGIAK 537 (826)
Q Consensus 461 l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i-~~L~~L~~L~L~~~~~~~~lp--~~i~~ 537 (826)
+.+|++|+|++ | .+..++ .+..+++|++|++++|. ++.+++.+ ..+++|+.|++++|.+. .+. ..+..
T Consensus 41 l~~L~~L~Ls~-----N-~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~L~~N~I~-~l~~l~~L~~ 111 (175)
T PF14580_consen 41 LDKLEVLDLSN-----N-QITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELYLSNNKIS-DLNELEPLSS 111 (175)
T ss_dssp -TT--EEE-TT-----S---S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG
T ss_pred hcCCCEEECCC-----C-CCcccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCCEEECcCCcCC-ChHHhHHHHc
Confidence 45566666662 2 333332 34456666666666665 44554333 24566666666666532 111 23455
Q ss_pred ccCCCeeeecCcccccCCc----cCCCCCCCCcCCceee
Q 003367 538 LINLRHLINEGTPLLYLPK----GLERLTCLRTLSEFTV 572 (826)
Q Consensus 538 L~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L~~~~~ 572 (826)
+++|++|++.+|++...+. .+..+++|+.|+...+
T Consensus 112 l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 112 LPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp -TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 5666666666666554332 2445555555554433
No 65
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.59 E-value=5.1e-07 Score=83.90 Aligned_cols=124 Identities=23% Similarity=0.209 Sum_probs=73.4
Q ss_pred ccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHh
Q 003367 81 RGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESF 160 (826)
Q Consensus 81 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 160 (826)
+|++..+..+...+... ..+.+.|+|.+|+||||+|+++++... ..-..++++...+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47889999999988653 335799999999999999999998543 222346666655433222111111000
Q ss_pred cccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCC------CCCcEEEEecccH
Q 003367 161 RDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFG------SPESRILVTTRKE 224 (826)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~------~~~s~iivTtR~~ 224 (826)
............++.++|+||++.-.......+...+... ..+..||+||...
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 0011111223457789999999643222333343333322 3677888888764
No 66
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.59 E-value=6.4e-08 Score=93.90 Aligned_cols=51 Identities=29% Similarity=0.428 Sum_probs=34.4
Q ss_pred ccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccc
Q 003367 79 KVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVD 132 (826)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 132 (826)
+|+||+++++++...+... .....+.+.|+|.+|+|||+|+++++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA---QSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT---SS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH---HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4899999999999999522 23356899999999999999999999865443
No 67
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=2.1e-06 Score=90.43 Aligned_cols=180 Identities=13% Similarity=0.149 Sum_probs=116.8
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccc----cccCCCcEEEEEe-CCCCCHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVK----VDAHFDKRIWVCF-SDPVDEIRV 152 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~----~~~~f~~~~wv~~-~~~~~~~~~ 152 (826)
.+++|.+..++.+...+... .-.....++|+.|+||||+|+.++.... ...|+|...|... +....+.++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i 78 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI 78 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH
Confidence 46789999999999998543 2345778999999999999999998431 2345554444332 122222221
Q ss_pred HHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccHHHH-hh-c
Q 003367 153 AKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKEDVA-KM-M 230 (826)
Q Consensus 153 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~~v~-~~-~ 230 (826)
+++.+.+.. .-..+++-++|+|+++..+...+..+...+....+++.+|++|.+.... .. .
T Consensus 79 -r~~~~~~~~----------------~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 79 -RNIIEEVNK----------------KPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred -HHHHHHHhc----------------CcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 111111110 0123566678888886667778999999998888889988888765422 11 1
Q ss_pred cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHH
Q 003367 231 RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTS 287 (826)
Q Consensus 231 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 287 (826)
.....+.+.++++++....+.+... .. . .+.++.++..++|.|..+...
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~-~~---~----~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYN-DI---K----EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhc-CC---C----HHHHHHHHHHcCCCHHHHHHH
Confidence 2246889999999998887765431 11 1 334677899999998755443
No 68
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=2.6e-06 Score=93.40 Aligned_cols=186 Identities=20% Similarity=0.239 Sum_probs=111.1
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccC-------------------CCcE
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAH-------------------FDKR 138 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~ 138 (826)
.+++|.+...+.|...+.... -...+.++|++|+||||+|+.+++....... +..+
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 468999988888888775432 2345789999999999999999885322110 0012
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHH-HhcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEE
Q 003367 139 IWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEK-SVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRI 217 (826)
Q Consensus 139 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~i 217 (826)
..+..+...... ++.++.+.... -..+++-++|+|+++.-.....+.+...+........+
T Consensus 89 ~el~aa~~~gid------------------~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~ 150 (472)
T PRK14962 89 IELDAASNRGID------------------EIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVF 150 (472)
T ss_pred EEEeCcccCCHH------------------HHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 222222111111 11122221111 12356679999999655555666777777654445555
Q ss_pred EEeccc-HHHHhhc-cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCC-CchhHHHHhhh
Q 003367 218 LVTTRK-EDVAKMM-RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNG-LPLAAKTSGSL 290 (826)
Q Consensus 218 ivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g-lPLal~~~~~~ 290 (826)
|++|.+ ..+...+ .....+++.+++.++....+...+...+.... .+....|++.++| .+.|+..+-.+
T Consensus 151 Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~----~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 151 VLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID----REALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred EEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 544433 3343322 23468899999999998888887644332222 4566778887765 56666666543
No 69
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.55 E-value=2.4e-07 Score=92.36 Aligned_cols=89 Identities=18% Similarity=0.251 Sum_probs=63.2
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCC--CCHHHHHHHH-----HHHhcccchhhh-hHHHHHHH
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDP--VDEIRVAKAI-----LESFRDVVSAVA-AFDTLLRH 176 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i-----~~~l~~~~~~~~-~~~~~~~~ 176 (826)
-+.++|+|++|+|||||+++++++.... +|+.++|+.+... .++.++++.+ +.+++.+..... -.....+.
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999976544 8999999997776 7899999999 444443221111 11122222
Q ss_pred HHHH-hcCCceeEEeccCC
Q 003367 177 IEKS-VKGKKFLLVLDDVW 194 (826)
Q Consensus 177 l~~~-l~~k~~LlVlDdv~ 194 (826)
.... -.++++++++|++.
T Consensus 95 a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 95 AKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHCCCCEEEEEECHH
Confidence 2222 25899999999993
No 70
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=3.7e-06 Score=89.06 Aligned_cols=207 Identities=16% Similarity=0.210 Sum_probs=126.5
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
..+.+|+++++++...|...-. +..+.-+.|+|..|.|||+.++.+++..+....=..+++|++....+..+++..|+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 17 EELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 4489999999999988765433 12233489999999999999999999543222212278999999999999999999
Q ss_pred HHhcccchhhhhHHHHHHHHHHHh--cCCceeEEeccCCCCChhhHHHHHhhhcCCCC-CcEE--EEecccHHHHhhcc-
Q 003367 158 ESFRDVVSAVAAFDTLLRHIEKSV--KGKKFLLVLDDVWSGNPTKWEELVSTLKFGSP-ESRI--LVTTRKEDVAKMMR- 231 (826)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~-~s~i--ivTtR~~~v~~~~~- 231 (826)
++++..........+..+.+.+.+ .++.++||||++..-....-+.+...+..... .++| |..+-+......+.
T Consensus 95 ~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~ 174 (366)
T COG1474 95 NKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDP 174 (366)
T ss_pred HHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhh
Confidence 999755444445555666666666 46899999999943111111333333333222 3443 33444333222211
Q ss_pred ------ccceEEccCCCCchhHHHHHHhhhcCCC-cccchhhHHHHHHHHHhcCC-CchhHHH
Q 003367 232 ------TTSMILLAKLPDNDCWSLFSQIAFSGRT-TEECQKLTDIGRMIADKCNG-LPLAAKT 286 (826)
Q Consensus 232 ------~~~~~~l~~L~~~~~~~lf~~~a~~~~~-~~~~~~~~~~~~~i~~~~~g-lPLal~~ 286 (826)
....+...+-+.+|-..++..++-..-. ....++..++...++..-+| --.||..
T Consensus 175 rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidi 237 (366)
T COG1474 175 RVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDI 237 (366)
T ss_pred hhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHH
Confidence 1223678888888888888887643211 12222333334444444443 3344444
No 71
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.55 E-value=1.9e-06 Score=96.82 Aligned_cols=192 Identities=18% Similarity=0.233 Sum_probs=116.5
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
.++||.+..++.|...+.... -...+.++|..|+||||+|+.+++.......+. ..+.........|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHH
Confidence 468999999999999886532 234568999999999999999988543211100 00111111111111
Q ss_pred HH-------hccc-chhhhhHHHHHHHHHHH-hcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEeccc-HHHH
Q 003367 158 ES-------FRDV-VSAVAAFDTLLRHIEKS-VKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRK-EDVA 227 (826)
Q Consensus 158 ~~-------l~~~-~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~-~~v~ 227 (826)
.. +... .....++.++.+.+... ..+++-++|+|+++.-+....+.++..+.......++|++|.+ ..+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 00 0000 01112223333322211 2467779999999877778888888888776666666655554 4443
Q ss_pred hh-ccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHH
Q 003367 228 KM-MRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAK 285 (826)
Q Consensus 228 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~ 285 (826)
.. ......|.+++++.++..+.+.+.+-......+ .+..+.|++.++|.+--+.
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e----~~aL~~Ia~~s~Gs~R~Al 218 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFE----PRALQLLARAADGSMRDAL 218 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 22 222568999999999999988876533222122 4556789999999886433
No 72
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.54 E-value=1.5e-06 Score=97.03 Aligned_cols=180 Identities=15% Similarity=0.225 Sum_probs=112.1
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccC-------------------CCcE
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAH-------------------FDKR 138 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~ 138 (826)
.+++|.+..++.|..++.... -...+.++|..|+||||+|+.+++....... |..+
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 468999999999999986532 3456899999999999999999874322111 1011
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHH-HhcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEE
Q 003367 139 IWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEK-SVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRI 217 (826)
Q Consensus 139 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~i 217 (826)
+.+....... ..++.++.+.... -..+++-++|+|++...+......++..+.......++
T Consensus 91 lEidaAs~~g------------------Vd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~f 152 (709)
T PRK08691 91 LEIDAASNTG------------------IDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (709)
T ss_pred EEEeccccCC------------------HHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEE
Confidence 1222111111 1112222221111 12356679999999765656677777777665556677
Q ss_pred EEecccH-HHHhh-ccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhH
Q 003367 218 LVTTRKE-DVAKM-MRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAA 284 (826)
Q Consensus 218 ivTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal 284 (826)
|++|.+. .+... ......+.+++++.++....+.+.+-..+...+ .+..+.|++.++|.+.-+
T Consensus 153 ILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id----~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 153 ILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE----PPALQLLGRAAAGSMRDA 217 (709)
T ss_pred EEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHhCCCHHHH
Confidence 7766543 22222 122356788899999999988877654433222 456788999999988543
No 73
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.54 E-value=6.3e-08 Score=106.34 Aligned_cols=164 Identities=26% Similarity=0.334 Sum_probs=125.1
Q ss_pred hhhhccC-CCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccch
Q 003367 455 PSLFDRL-TCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQ 533 (826)
Q Consensus 455 ~~~~~~l-~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~ 533 (826)
+.....+ .+|+.|+++ .+ .+..+|..++.+++|+.|++++|. +..+|...+.+.+|+.|++++|. +..+|.
T Consensus 132 ~~~~~~~~~nL~~L~l~-----~N-~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~ 203 (394)
T COG4886 132 PPLIGLLKSNLKELDLS-----DN-KIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSGNK-ISDLPP 203 (394)
T ss_pred ccccccchhhccccccc-----cc-chhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhheeccCCc-cccCch
Confidence 3444555 399999999 55 677787889999999999999999 99999877799999999999998 788998
Q ss_pred hhhcccCCCeeeecCcccccCCccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhh
Q 003367 534 GIAKLINLRHLINEGTPLLYLPKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKS 613 (826)
Q Consensus 534 ~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~ 613 (826)
.+..+..|++|.+++|.+...+..+.++.++..|.+..+..... .
T Consensus 204 ~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~-----------------------------------~ 248 (394)
T COG4886 204 EIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL-----------------------------------P 248 (394)
T ss_pred hhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeec-----------------------------------c
Confidence 88888889999999998778888888888888887444332100 1
Q ss_pred hhccCCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCc
Q 003367 614 AKLESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSW 671 (826)
Q Consensus 614 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~ 671 (826)
..+..+..++.|+++.+.+... ..+.+..+++.|+++++.+...+|..
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i----------~~~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSI----------SSLGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred chhccccccceecccccccccc----------ccccccCccCEEeccCccccccchhh
Confidence 1233344566666666653322 22667889999999999988874543
No 74
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.53 E-value=6.2e-08 Score=90.56 Aligned_cols=108 Identities=33% Similarity=0.389 Sum_probs=41.3
Q ss_pred hccCCCCcEEecccccccccccccccccccc-CCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhh-
Q 003367 458 FDRLTCLRTLCLRCHERHFCLSIARLPRNIK-KLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGI- 535 (826)
Q Consensus 458 ~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~-~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i- 535 (826)
+.+...++.|+|+ ++ .+..+ +.++ .+.+|+.|+|++|. +..++. +..+++|++|++++|. +..++..+
T Consensus 15 ~~n~~~~~~L~L~-----~n-~I~~I-e~L~~~l~~L~~L~Ls~N~-I~~l~~-l~~L~~L~~L~L~~N~-I~~i~~~l~ 84 (175)
T PF14580_consen 15 YNNPVKLRELNLR-----GN-QISTI-ENLGATLDKLEVLDLSNNQ-ITKLEG-LPGLPRLKTLDLSNNR-ISSISEGLD 84 (175)
T ss_dssp ----------------------------S--TT-TT--EEE-TTS---S--TT-----TT--EEE--SS----S-CHHHH
T ss_pred ccccccccccccc-----cc-ccccc-cchhhhhcCCCEEECCCCC-CccccC-ccChhhhhhcccCCCC-CCccccchH
Confidence 4455678999999 44 44444 3455 58899999999999 778864 8899999999999999 55666556
Q ss_pred hcccCCCeeeecCcccccCCc--cCCCCCCCCcCCceeeCcc
Q 003367 536 AKLINLRHLINEGTPLLYLPK--GLERLTCLRTLSEFTVSDI 575 (826)
Q Consensus 536 ~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~~~~~~~~ 575 (826)
..+++|++|++++|.+..+.. .+..+++|+.|++.+|...
T Consensus 85 ~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 85 KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 469999999999999986543 3567788888888777654
No 75
>PRK08727 hypothetical protein; Validated
Probab=98.53 E-value=2e-06 Score=86.08 Aligned_cols=148 Identities=16% Similarity=0.081 Sum_probs=89.5
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCc
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKK 185 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 185 (826)
..+.|+|..|+|||+||+++++... .....+.|+++.+ ....+. +.+.. + .+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~--~~~~~~~y~~~~~------~~~~~~-----------------~~~~~-l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAE--QAGRSSAYLPLQA------AAGRLR-----------------DALEA-L-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEeHHH------hhhhHH-----------------HHHHH-H-hcC
Confidence 4699999999999999999988432 3333556665322 111111 11111 1 233
Q ss_pred eeEEeccCCCCC-hhhHHH-HHhhhcC-CCCCcEEEEecccHH---------HHhhccccceEEccCCCCchhHHHHHHh
Q 003367 186 FLLVLDDVWSGN-PTKWEE-LVSTLKF-GSPESRILVTTRKED---------VAKMMRTTSMILLAKLPDNDCWSLFSQI 253 (826)
Q Consensus 186 ~LlVlDdv~~~~-~~~~~~-l~~~~~~-~~~~s~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 253 (826)
-+||+||+.... ...|+. +...+.. ...|..||+|++... +...+.....+++++++.++-.+++.++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 599999995321 123433 3333222 234667999998532 2222333458899999999999999987
Q ss_pred hhcCCCcccchhhHHHHHHHHHhcCCCchhH
Q 003367 254 AFSGRTTEECQKLTDIGRMIADKCNGLPLAA 284 (826)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~i~~~~~glPLal 284 (826)
+...+-..+ .++..-|++.++|-.-++
T Consensus 175 a~~~~l~l~----~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 175 AQRRGLALD----EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHcCCCCC----HHHHHHHHHhCCCCHHHH
Confidence 754332222 566777888888766544
No 76
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.52 E-value=9.7e-07 Score=101.42 Aligned_cols=172 Identities=21% Similarity=0.287 Sum_probs=98.5
Q ss_pred CccccchHHHH---HHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHH
Q 003367 78 SKVRGRDEEKK---TIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAK 154 (826)
Q Consensus 78 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 154 (826)
.+|+|.+..+. .+...+... ....+.|+|++|+||||+|+.+++.. ...|. .++... ...
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~------~~~slLL~GPpGtGKTTLA~aIA~~~--~~~f~---~lna~~-~~i----- 90 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD------RVGSLILYGPPGVGKTTLARIIANHT--RAHFS---SLNAVL-AGV----- 90 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHh--cCcce---eehhhh-hhh-----
Confidence 46899988774 455555432 44567899999999999999999843 33331 111110 000
Q ss_pred HHHHHhcccchhhhhHHHHHHHHHHHh--cCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEE--ecccHH--HHh
Q 003367 155 AILESFRDVVSAVAAFDTLLRHIEKSV--KGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILV--TTRKED--VAK 228 (826)
Q Consensus 155 ~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iiv--TtR~~~--v~~ 228 (826)
.+..+......+.+ .+++.++||||++.-+..+++.+...+. .|+.++| ||.+.. +..
T Consensus 91 -------------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 91 -------------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred -------------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 01111111221111 2467899999997666666666665443 3555555 344331 211
Q ss_pred hc-cccceEEccCCCCchhHHHHHHhhhcCC---CcccchhhHHHHHHHHHhcCCCch
Q 003367 229 MM-RTTSMILLAKLPDNDCWSLFSQIAFSGR---TTEECQKLTDIGRMIADKCNGLPL 282 (826)
Q Consensus 229 ~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~---~~~~~~~~~~~~~~i~~~~~glPL 282 (826)
.+ .....+.+++++.++...++.+.+-... ......-..+..+.|++.+.|.--
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 11 1245799999999999999887653100 000011124566778888888644
No 77
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.52 E-value=1.7e-06 Score=86.71 Aligned_cols=153 Identities=14% Similarity=0.097 Sum_probs=90.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcC
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKG 183 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 183 (826)
..+.+.|+|..|+|||+||+++++.... .. ..+.+++..... .. + .. ..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~-~~-~~~~~i~~~~~~------~~----~------------------~~-~~ 89 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASY-GG-RNARYLDAASPL------LA----F------------------DF-DP 89 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHh-CC-CcEEEEehHHhH------HH----H------------------hh-cc
Confidence 3457899999999999999999985321 11 234455543311 00 0 01 12
Q ss_pred CceeEEeccCCCCChhhHHHHHhhhcCC-CCCc-EEEEecccHHHHh--------hccccceEEccCCCCchhHHHHHHh
Q 003367 184 KKFLLVLDDVWSGNPTKWEELVSTLKFG-SPES-RILVTTRKEDVAK--------MMRTTSMILLAKLPDNDCWSLFSQI 253 (826)
Q Consensus 184 k~~LlVlDdv~~~~~~~~~~l~~~~~~~-~~~s-~iivTtR~~~v~~--------~~~~~~~~~l~~L~~~~~~~lf~~~ 253 (826)
..-+||+||+..-+...-+.+...+... ..+. .+|+|++...... .+.....+++.++++++-..++.+.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 3447999999543333333444444321 2333 4677766432211 2222468899999998877777665
Q ss_pred hhcCCCcccchhhHHHHHHHHHhcCCCchhHHHHhhhh
Q 003367 254 AFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTSGSLL 291 (826)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l 291 (826)
+-......+ .++.+.+++.+.|.+..+..+-..+
T Consensus 170 ~~~~~v~l~----~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 170 AAERGLQLA----DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHcCCCCC----HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 432222122 5677888889999999887766554
No 78
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=3.4e-06 Score=91.98 Aligned_cols=179 Identities=17% Similarity=0.233 Sum_probs=115.8
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccc-------------------cCCCcE
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVD-------------------AHFDKR 138 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~f~~~ 138 (826)
.++||.+..++.+...+.... -.+.+.++|+.|+||||+|+.+++..... ..+..+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 468999999998888875432 34578899999999999999998632110 111223
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHH-HhcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEE
Q 003367 139 IWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEK-SVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRI 217 (826)
Q Consensus 139 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~i 217 (826)
+.++.+....+.++ .++.+.... -..++.-++|+|+++.-+....+.+...+....+..++
T Consensus 88 ~eidaas~~~vddI------------------R~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~f 149 (491)
T PRK14964 88 IEIDAASNTSVDDI------------------KVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKF 149 (491)
T ss_pred EEEecccCCCHHHH------------------HHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEE
Confidence 34443333222221 122111111 01356668999999766667788888888877777777
Q ss_pred EEeccc-HHHHhhc-cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchh
Q 003367 218 LVTTRK-EDVAKMM-RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLA 283 (826)
Q Consensus 218 ivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLa 283 (826)
|++|.. ..+...+ .....+++.+++.++..+.+.+.+...+...+ .+..+.|++.++|.+-.
T Consensus 150 Ilatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~----~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 150 ILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD----EESLKLIAENSSGSMRN 213 (491)
T ss_pred EEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHH
Confidence 766543 4443332 23567899999999999998887754433222 45667899999987753
No 79
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.51 E-value=3.1e-07 Score=94.42 Aligned_cols=235 Identities=21% Similarity=0.232 Sum_probs=154.9
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCC-CcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHF-DKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVK 182 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 182 (826)
..|.+.++|.|||||||++-.+.. .+.-| +.+.++....-.+...+.-.....++.... +.+.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~---~g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ---PGDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc---cchHHHHHHHHHHh
Confidence 457899999999999999999998 34556 556677766666666666666665654321 11223344555667
Q ss_pred CCceeEEeccCCCCC-hhhHHHHHhhhcCCCCCcEEEEecccHHHHhhccccceEEccCCCCc-hhHHHHHHhhhcCCCc
Q 003367 183 GKKFLLVLDDVWSGN-PTKWEELVSTLKFGSPESRILVTTRKEDVAKMMRTTSMILLAKLPDN-DCWSLFSQIAFSGRTT 260 (826)
Q Consensus 183 ~k~~LlVlDdv~~~~-~~~~~~l~~~~~~~~~~s~iivTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~a~~~~~~ 260 (826)
++|.++|+||. .. .+.-..+...+..+.+.-.|+.|+|.... ...+..+.+..|+.. ++.++|...+......
T Consensus 87 ~rr~llvldnc--ehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~ 161 (414)
T COG3903 87 DRRALLVLDNC--EHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALS 161 (414)
T ss_pred hhhHHHHhcCc--HHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccc
Confidence 89999999998 21 11222334445555666788999996533 234566778888764 7999998776443322
Q ss_pred -ccchhhHHHHHHHHHhcCCCchhHHHHhhhhcCCcCHHHHHHhhhhh-------cccccccCcCcchhhhhhccCCcHH
Q 003367 261 -EECQKLTDIGRMIADKCNGLPLAAKTSGSLLSLKTTMEQWKTVLDSE-------IWKVEDVEKGLLPPLVISYFDLPSI 332 (826)
Q Consensus 261 -~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~w~~~~~~~-------~~~~~~~~~~i~~~l~~sy~~L~~~ 332 (826)
.-.......+.+|.+..+|.|++|..+++..+.-. ...-...+... .....--+......+.+||.-|..-
T Consensus 162 f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~-~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgw 240 (414)
T COG3903 162 FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLS-PDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGW 240 (414)
T ss_pred eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcC-HHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhH
Confidence 11223466788899999999999999998876542 22111111111 1111111245788899999999999
Q ss_pred HHHHhhhhccCCCCceeC
Q 003367 333 VRRCFSYCAIFPKGYEIN 350 (826)
Q Consensus 333 ~k~~fl~~a~fp~~~~i~ 350 (826)
.+..|.-++.|...+...
T Consensus 241 e~~~~~rLa~~~g~f~~~ 258 (414)
T COG3903 241 ERALFGRLAVFVGGFDLG 258 (414)
T ss_pred HHHHhcchhhhhhhhccc
Confidence 999999999998776543
No 80
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=3e-06 Score=95.17 Aligned_cols=194 Identities=16% Similarity=0.209 Sum_probs=114.1
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCC--CcEEEEEeCCCCCHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHF--DKRIWVCFSDPVDEIRVAKA 155 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~ 155 (826)
.++||-+..++.|..++.... -...+.++|..|+||||+|+.+++........ .+... .+.........
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHH
Confidence 468999998999999886542 34567899999999999999997643211100 00000 01111111111
Q ss_pred HHHH-----hcccchhhhhHHHHHHHHHHH----hcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEec-ccHH
Q 003367 156 ILES-----FRDVVSAVAAFDTLLRHIEKS----VKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTT-RKED 225 (826)
Q Consensus 156 i~~~-----l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTt-R~~~ 225 (826)
|... +.........++++.+.+... ..++.-++|||+|+.-+...+..++..+.......++|++| ....
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 1100 000000111222222222211 13455689999998877778888888877665666666555 4344
Q ss_pred HHhh-ccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhH
Q 003367 226 VAKM-MRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAA 284 (826)
Q Consensus 226 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal 284 (826)
+... ......+++++++.++..+.+.+.+...+...+ .+..+.|++.++|.+--+
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie----~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE----PQALRLLARAARGSMRDA 222 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 3322 223568999999999999988877654333222 456778899999877543
No 81
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.51 E-value=5.3e-06 Score=89.66 Aligned_cols=182 Identities=16% Similarity=0.208 Sum_probs=112.3
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhccccccc--------------------CCCc
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDA--------------------HFDK 137 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~f~~ 137 (826)
.+++|.++.++.+.+++.... -...+.++|+.|+||||+|+.++....... +++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~- 87 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD- 87 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-
Confidence 468999999999999885432 345678999999999999999987432110 122
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHH-hcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcE
Q 003367 138 RIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKS-VKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESR 216 (826)
Q Consensus 138 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~ 216 (826)
++++........ .+..++.+.+... ..+++-++|+|++..-.......+...+......+.
T Consensus 88 ~~~~~~~~~~~~------------------~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 88 VIEIDAASNNGV------------------DDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred EEEeeccccCCH------------------HHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 122222111111 1112222222111 234566899999955455567777777766556677
Q ss_pred EEEecccHH-HHhhc-cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHH
Q 003367 217 ILVTTRKED-VAKMM-RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTS 287 (826)
Q Consensus 217 iivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 287 (826)
+|++|.+.. +...+ .....+++.+++.++..+.+..++-..+...+ .+.+..+++.++|.|..+...
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~----~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE----DEALELIARAADGSLRDALSL 218 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCChHHHHHH
Confidence 766665443 22222 22457889999999988888877643332222 467788999999988755443
No 82
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.51 E-value=1.9e-08 Score=97.34 Aligned_cols=100 Identities=30% Similarity=0.251 Sum_probs=49.8
Q ss_pred CCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCC
Q 003367 462 TCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINL 541 (826)
Q Consensus 462 ~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L 541 (826)
+.|..|||+ +| .+..+.+++.-++.++.|++|+|. +..+.. +..|++|+.|||++|. +..+-..-.+|.+.
T Consensus 284 q~LtelDLS-----~N-~I~~iDESvKL~Pkir~L~lS~N~-i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 284 QELTELDLS-----GN-LITQIDESVKLAPKLRRLILSQNR-IRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNI 354 (490)
T ss_pred hhhhhcccc-----cc-chhhhhhhhhhccceeEEeccccc-eeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCE
Confidence 445555555 33 344444555555555566665555 333332 4555555555555554 33343334455555
Q ss_pred CeeeecCcccccCCccCCCCCCCCcCCcee
Q 003367 542 RHLINEGTPLLYLPKGLERLTCLRTLSEFT 571 (826)
Q Consensus 542 ~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~ 571 (826)
+.|.+++|.+..+ .++++|-+|..|++.+
T Consensus 355 KtL~La~N~iE~L-SGL~KLYSLvnLDl~~ 383 (490)
T KOG1259|consen 355 KTLKLAQNKIETL-SGLRKLYSLVNLDLSS 383 (490)
T ss_pred eeeehhhhhHhhh-hhhHhhhhheeccccc
Confidence 5555555554443 2344444444444433
No 83
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.49 E-value=1.9e-06 Score=86.25 Aligned_cols=153 Identities=15% Similarity=0.135 Sum_probs=91.8
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCC
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGK 184 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 184 (826)
.+.+.|+|+.|+|||+|++++++... ..-..+.|+.+..... ...+..+.+. +
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~--~~~~~v~y~~~~~~~~--------------------~~~~~~~~~~-----~ 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELS--QRGRAVGYVPLDKRAW--------------------FVPEVLEGME-----Q 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEEHHHHhh--------------------hhHHHHHHhh-----h
Confidence 35789999999999999999998433 2233456666532100 0011111111 1
Q ss_pred ceeEEeccCCCCC-hhhHHH-HHhhhcCC-CCC-cEEEEecccHH---------HHhhccccceEEccCCCCchhHHHHH
Q 003367 185 KFLLVLDDVWSGN-PTKWEE-LVSTLKFG-SPE-SRILVTTRKED---------VAKMMRTTSMILLAKLPDNDCWSLFS 251 (826)
Q Consensus 185 ~~LlVlDdv~~~~-~~~~~~-l~~~~~~~-~~~-s~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~ 251 (826)
--+|++||+.... ..+|+. +...+... ..| .++|+||+... +...+....+++++++++++-.+++.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 2489999995422 234543 22333221 123 37889887542 23334445789999999999999998
Q ss_pred HhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHHh
Q 003367 252 QIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTSG 288 (826)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~ 288 (826)
+++...+-.- -+++..-|++.+.|..-++..+-
T Consensus 178 ~~a~~~~~~l----~~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 178 LRARLRGFEL----PEDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred HHHHHcCCCC----CHHHHHHHHHhhcCCHHHHHHHH
Confidence 8664432211 25677788888888766555443
No 84
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.49 E-value=3.5e-06 Score=93.31 Aligned_cols=195 Identities=16% Similarity=0.196 Sum_probs=113.7
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
.+++|++..++.+...+.... -.+.+.++|+.|+||||+|+.+++...... |... .+.........+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~-~~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDG-DCCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCC-CCCcccHHHHHHH
Confidence 468999999999999885532 345788999999999999999988542111 1110 0111111111111
Q ss_pred HHh-------ccc-chhhhhHHHHHHHHHHH-hcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEec-ccHHHH
Q 003367 158 ESF-------RDV-VSAVAAFDTLLRHIEKS-VKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTT-RKEDVA 227 (826)
Q Consensus 158 ~~l-------~~~-~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTt-R~~~v~ 227 (826)
... ... .....++..+.+.+... ..+++-++|+|+++.-+...+..+...+........+|++| ....+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 110 000 01111222222222211 12344479999997666677888888877655566666555 433443
Q ss_pred hh-ccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCch-hHHHHh
Q 003367 228 KM-MRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPL-AAKTSG 288 (826)
Q Consensus 228 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPL-al~~~~ 288 (826)
.. ......+++.+++.++....+...+...+.... .+.++.+++.++|.+- |+..+-
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is----~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE----DNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHHH
Confidence 22 223568899999999999888876643322122 4557789999999664 444443
No 85
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=2.1e-06 Score=93.26 Aligned_cols=197 Identities=16% Similarity=0.196 Sum_probs=112.7
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEE-eCCCCCHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVC-FSDPVDEIRVAKAI 156 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i 156 (826)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++.......+....|.. ...+......-..+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 468999999999998886431 234588999999999999999988543221111100100 00111111111111
Q ss_pred HHHhcc-----cchhhhhHHHHHHHHHHH----hcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEec-ccHHH
Q 003367 157 LESFRD-----VVSAVAAFDTLLRHIEKS----VKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTT-RKEDV 226 (826)
Q Consensus 157 ~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTt-R~~~v 226 (826)
...... ........+++.+..... ..+++-++|+|++..-....++.+...+....+.+.+|++| +...+
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence 110000 000011122222221111 23566689999996666667888888887666677766555 44444
Q ss_pred Hhhcc-ccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchh
Q 003367 227 AKMMR-TTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLA 283 (826)
Q Consensus 227 ~~~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLa 283 (826)
...+. ....+++.+++.++..+.+...+-..+.... .+.++.|++.++|.+--
T Consensus 171 ~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~----~~al~~l~~~s~g~lr~ 224 (397)
T PRK14955 171 PATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVD----ADALQLIGRKAQGSMRD 224 (397)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHH
Confidence 43222 2457889999999988888776533222122 56778899999997753
No 86
>PLN03150 hypothetical protein; Provisional
Probab=98.49 E-value=1.6e-07 Score=107.97 Aligned_cols=104 Identities=26% Similarity=0.349 Sum_probs=80.0
Q ss_pred CCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCCC
Q 003367 463 CLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINLR 542 (826)
Q Consensus 463 ~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~ 542 (826)
.++.|+|++|. ..+.+|..++.+++|++|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..+++|++|+
T Consensus 419 ~v~~L~L~~n~-----L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~ 493 (623)
T PLN03150 419 FIDGLGLDNQG-----LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493 (623)
T ss_pred EEEEEECCCCC-----ccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCC
Confidence 36778888332 2345788888899999999999887778888888999999999999988888888899999999
Q ss_pred eeeecCcccc-cCCccCCCC-CCCCcCCcee
Q 003367 543 HLINEGTPLL-YLPKGLERL-TCLRTLSEFT 571 (826)
Q Consensus 543 ~L~l~~~~l~-~lp~~i~~L-~~L~~L~~~~ 571 (826)
+|++++|.+. .+|..++.+ .++..+++.+
T Consensus 494 ~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~ 524 (623)
T PLN03150 494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTD 524 (623)
T ss_pred EEECcCCcccccCChHHhhccccCceEEecC
Confidence 9999988887 778776653 2344444433
No 87
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.48 E-value=1.9e-06 Score=98.26 Aligned_cols=203 Identities=19% Similarity=0.199 Sum_probs=119.5
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCC---CcEEEEEeCC---CCCHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHF---DKRIWVCFSD---PVDEIR 151 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~---~~~~~~ 151 (826)
+.++|++..++.+.+.+... ....+.|+|++|+||||+|+.+++.......+ ...-|+.+.. ..+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 46899999999988877432 34579999999999999999998754322222 1223444332 112222
Q ss_pred HHHHHH---------------HHhcccc----------------hhhhhH-HHHHHHHHHHhcCCceeEEeccCCCCChh
Q 003367 152 VAKAIL---------------ESFRDVV----------------SAVAAF-DTLLRHIEKSVKGKKFLLVLDDVWSGNPT 199 (826)
Q Consensus 152 ~~~~i~---------------~~l~~~~----------------~~~~~~-~~~~~~l~~~l~~k~~LlVlDdv~~~~~~ 199 (826)
+...++ ...+... .....+ ...+..+.+.++++++.++-|+.|..+..
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 211111 1111000 000001 22456777778888888888888777777
Q ss_pred hHHHHHhhhcCCCCCcEEEE--ecccHHH-Hhhcc-ccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHH
Q 003367 200 KWEELVSTLKFGSPESRILV--TTRKEDV-AKMMR-TTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIAD 275 (826)
Q Consensus 200 ~~~~l~~~~~~~~~~s~iiv--TtR~~~v-~~~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~ 275 (826)
.|+.+...+....+...+++ ||++... ...+. ....+.+.+++.+|.++++.+.+....... -.++.+.|.+
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~l----s~eal~~L~~ 383 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHL----AAGVEELIAR 383 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHH
Confidence 78888777766666555555 5664431 11111 124678899999999999998764322111 1345556666
Q ss_pred hcCCCchhHHHHhhh
Q 003367 276 KCNGLPLAAKTSGSL 290 (826)
Q Consensus 276 ~~~glPLal~~~~~~ 290 (826)
++..-+-|+..++..
T Consensus 384 ys~~gRraln~L~~~ 398 (615)
T TIGR02903 384 YTIEGRKAVNILADV 398 (615)
T ss_pred CCCcHHHHHHHHHHH
Confidence 665446666655544
No 88
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=4.4e-06 Score=92.70 Aligned_cols=180 Identities=19% Similarity=0.195 Sum_probs=112.3
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccC-------------------CCcE
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAH-------------------FDKR 138 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~ 138 (826)
.++||-+..++.|..++.... -...+.++|+.|+||||+|+.+++....... |..+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 468999999999999996532 2345789999999999999999885432111 1112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHH-HhcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEE
Q 003367 139 IWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEK-SVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRI 217 (826)
Q Consensus 139 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~i 217 (826)
+.++......+. ++.++.+.+.. -..++.-++|+|+|+.-+......++..+....+.+++
T Consensus 91 ~eidaas~~~v~------------------~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~f 152 (509)
T PRK14958 91 FEVDAASRTKVE------------------DTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKF 152 (509)
T ss_pred EEEcccccCCHH------------------HHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEE
Confidence 222222211111 11222221111 11356678999999777777888888888776667777
Q ss_pred EEeccc-HHHHhhc-cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhH
Q 003367 218 LVTTRK-EDVAKMM-RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAA 284 (826)
Q Consensus 218 ivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal 284 (826)
|++|.+ ..+...+ .....+++++++.++....+.+.+-..+...+ .+..+.|++.++|.+.-+
T Consensus 153 Ilattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~----~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 153 ILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE----NAALDLLARAANGSVRDA 217 (509)
T ss_pred EEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHH
Confidence 765544 3333222 22457889999998887777666543332222 445677889999877543
No 89
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=2.9e-06 Score=89.55 Aligned_cols=197 Identities=15% Similarity=0.177 Sum_probs=118.0
Q ss_pred CCccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccC--CCcEEEEEeCCCCCHHHHHH
Q 003367 77 VSKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAH--FDKRIWVCFSDPVDEIRVAK 154 (826)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~ 154 (826)
-..++|-++..+.+...+.... ....+.|+|+.|+||||+|+.+++..-.... +... ....+.......+
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~ 93 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWR 93 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHH
Confidence 3568999999999999986542 3456899999999999999999885432110 1110 0011111112222
Q ss_pred HHHHH-------hc----ccc---hhhhhHHHHHHHHHHHh-----cCCceeEEeccCCCCChhhHHHHHhhhcCCCCCc
Q 003367 155 AILES-------FR----DVV---SAVAAFDTLLRHIEKSV-----KGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPES 215 (826)
Q Consensus 155 ~i~~~-------l~----~~~---~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s 215 (826)
.+... +. ... ...-.++++. .+.+.+ .+++-++|+|+++.-+....+.++..+.......
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 22221 10 000 0111133322 233332 3567799999998777777888888887655555
Q ss_pred EEE-EecccHHHHhhcc-ccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHHh
Q 003367 216 RIL-VTTRKEDVAKMMR-TTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTSG 288 (826)
Q Consensus 216 ~ii-vTtR~~~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~ 288 (826)
.+| +|++...+..... ....+.+.+++.++..+++.+...... -..+.+..|++.++|.|.....+.
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~------~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG------SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 544 4444433332222 246899999999999999987432111 113456789999999998655443
No 90
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.44 E-value=5.3e-06 Score=93.42 Aligned_cols=196 Identities=16% Similarity=0.189 Sum_probs=116.5
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCC--cEEEEEeCCCCCHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFD--KRIWVCFSDPVDEIRVAKA 155 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~ 155 (826)
.+++|.+..++.|...+.... -...+.++|+.|+||||+|+.+++......... ...+- ..........
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGEHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccHHHHH
Confidence 468999999999999986532 345688999999999999999998543221110 00000 0011111111
Q ss_pred HHHHhcc--------cchhhhhHHHHHHHHHHH-hcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEec-ccHH
Q 003367 156 ILESFRD--------VVSAVAAFDTLLRHIEKS-VKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTT-RKED 225 (826)
Q Consensus 156 i~~~l~~--------~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTt-R~~~ 225 (826)
|...-.. ......++.++.+.++.. ..+++-++|+|+++.-+....+.+...+......+.+|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 1111000 001122222333222211 23455689999997666667788888887766677776555 4334
Q ss_pred HHhhc-cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHH
Q 003367 226 VAKMM-RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKT 286 (826)
Q Consensus 226 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~ 286 (826)
+...+ .....+++..++.++....+.+.+-....... .+..+.|++.++|.+.-+..
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~----~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE----DEALALIARAAEGSVRDGLS 232 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 33322 22467899999999999988887644332222 46677899999998865433
No 91
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=6e-06 Score=92.36 Aligned_cols=183 Identities=18% Similarity=0.227 Sum_probs=111.9
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhccccccc-------------------CCCcE
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDA-------------------HFDKR 138 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~ 138 (826)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+++...... .|..+
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 468999999999999886532 234568999999999999999987542211 01112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHH-HhcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEE
Q 003367 139 IWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEK-SVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRI 217 (826)
Q Consensus 139 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~i 217 (826)
+++..+....+ .++.++.+.... -..+++-++|+|+++.-+......+...+........+
T Consensus 91 ~ei~~~~~~~v------------------d~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~f 152 (527)
T PRK14969 91 IEVDAASNTQV------------------DAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (527)
T ss_pred eEeeccccCCH------------------HHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEE
Confidence 22222111111 111112111111 11356779999999766666777888888776566666
Q ss_pred EEeccc-HHHHhh-ccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCch-hHHHH
Q 003367 218 LVTTRK-EDVAKM-MRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPL-AAKTS 287 (826)
Q Consensus 218 ivTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPL-al~~~ 287 (826)
|++|.+ ..+... ......+++++++.++..+.+.+.+...+...+ .+..+.|++.++|.+- |+..+
T Consensus 153 IL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~----~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 153 ILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFD----ATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 665544 333222 122457899999999988888776543322111 4556778999999775 44433
No 92
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.40 E-value=1.1e-05 Score=78.15 Aligned_cols=151 Identities=13% Similarity=0.194 Sum_probs=93.7
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccC-------------------CCcEEEEEeCC-CCCHHHHHHHHHHHhcccc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAH-------------------FDKRIWVCFSD-PVDEIRVAKAILESFRDVV 164 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~ 164 (826)
...+.++|+.|+||||+|+.+.+....... +....++.... ....
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~--------------- 78 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKV--------------- 78 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCH---------------
Confidence 367899999999999999999875432211 11111221111 1111
Q ss_pred hhhhhHHHHHHHHHHH-hcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccH-HHHhhc-cccceEEccCC
Q 003367 165 SAVAAFDTLLRHIEKS-VKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKE-DVAKMM-RTTSMILLAKL 241 (826)
Q Consensus 165 ~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~-~v~~~~-~~~~~~~l~~L 241 (826)
..+.++.+.+... ..+.+-++|+||+..-....++.+...+....+.+.+|++|++. .+...+ .....+++.++
T Consensus 79 ---~~i~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~ 155 (188)
T TIGR00678 79 ---DQVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPL 155 (188)
T ss_pred ---HHHHHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCC
Confidence 1111122222211 13566789999997666667788888887766677777777653 222221 22458999999
Q ss_pred CCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchh
Q 003367 242 PDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLA 283 (826)
Q Consensus 242 ~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLa 283 (826)
+.++..+.+.+. + .. .+.++.|++.++|.|..
T Consensus 156 ~~~~~~~~l~~~---g---i~----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 156 SEEALLQWLIRQ---G---IS----EEAAELLLALAGGSPGA 187 (188)
T ss_pred CHHHHHHHHHHc---C---CC----HHHHHHHHHHcCCCccc
Confidence 999998888776 1 11 45688899999998853
No 93
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=7.4e-06 Score=91.32 Aligned_cols=198 Identities=15% Similarity=0.238 Sum_probs=116.2
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
.+++|.+..++.|...+.... -...+.++|+.|+||||+|+.+++........+. .+.......+.|.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHh
Confidence 468899988888888885432 2457889999999999999999985432111100 0011111111111
Q ss_pred HHhc-------c-cchhhhhHHHHHHHHHH-HhcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEeccc-HHHH
Q 003367 158 ESFR-------D-VVSAVAAFDTLLRHIEK-SVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRK-EDVA 227 (826)
Q Consensus 158 ~~l~-------~-~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~-~~v~ 227 (826)
.... . ......++..+.+.+.. -..+++-+||+|+++.-+...+..+...+........+|++|.. ..+.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 1000 0 00011112222222221 12456779999999766667778888877654455666665544 4443
Q ss_pred hhc-cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCc-hhHHHHhhhh
Q 003367 228 KMM-RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLP-LAAKTSGSLL 291 (826)
Q Consensus 228 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glP-Lal~~~~~~l 291 (826)
..+ .....+++.+++.++....+...+.......+ .+.++.|++.++|.+ .|+..+...+
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id----~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD----PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 322 22457899999999999888876654332222 456778999999965 5777665443
No 94
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=5.1e-08 Score=99.71 Aligned_cols=115 Identities=21% Similarity=0.147 Sum_probs=58.5
Q ss_pred hhccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccch-hhcCCCCCcEEeccCCCCCcc-cchh
Q 003367 457 LFDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPE-ALCDLCNLQTLDVSNCGNLHA-LPQG 534 (826)
Q Consensus 457 ~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~-~i~~L~~L~~L~L~~~~~~~~-lp~~ 534 (826)
....|++++.|||+.|-++. ...+-.-...|++|+.|+|+.|.+..-..+ .-..+.+|+.|.|+.|.+... +-..
T Consensus 141 ~~k~~~~v~~LdLS~NL~~n---w~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~ 217 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHN---WFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWI 217 (505)
T ss_pred hhhhCCcceeecchhhhHHh---HHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHH
Confidence 44566777777777554432 222223344566777777777663211111 112456677777777764421 2222
Q ss_pred hhcccCCCeeeecCcc-cccCCccCCCCCCCCcCCceeeCc
Q 003367 535 IAKLINLRHLINEGTP-LLYLPKGLERLTCLRTLSEFTVSD 574 (826)
Q Consensus 535 i~~L~~L~~L~l~~~~-l~~lp~~i~~L~~L~~L~~~~~~~ 574 (826)
....++|+.|++..|. +..--.....+..|++|++.++..
T Consensus 218 ~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 218 LLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL 258 (505)
T ss_pred HHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc
Confidence 3355667777776653 221112233455566666666554
No 95
>PRK05642 DNA replication initiation factor; Validated
Probab=98.38 E-value=5e-06 Score=83.16 Aligned_cols=155 Identities=15% Similarity=0.181 Sum_probs=93.3
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCC
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGK 184 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 184 (826)
...+.|+|..|+|||.||+++++... ..-..++|++..+ +... ... +.+.+.+-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~--~~~~~v~y~~~~~------~~~~--------------~~~----~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE--QRGEPAVYLPLAE------LLDR--------------GPE----LLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEeeHHH------HHhh--------------hHH----HHHhhhhC
Confidence 35789999999999999999987432 2224566776432 1110 011 12222222
Q ss_pred ceeEEeccCCCC-ChhhHHH-HHhhhcC-CCCCcEEEEecccHHH---------HhhccccceEEccCCCCchhHHHHHH
Q 003367 185 KFLLVLDDVWSG-NPTKWEE-LVSTLKF-GSPESRILVTTRKEDV---------AKMMRTTSMILLAKLPDNDCWSLFSQ 252 (826)
Q Consensus 185 ~~LlVlDdv~~~-~~~~~~~-l~~~~~~-~~~~s~iivTtR~~~v---------~~~~~~~~~~~l~~L~~~~~~~lf~~ 252 (826)
=++|+||+... ....|+. +...+.. ...|..+|+|++...- ...+.....++++++++++-.+++..
T Consensus 99 -d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 -ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred -CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 27889999532 1234544 4444432 2346678888875321 12223346789999999999999986
Q ss_pred hhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHHhhh
Q 003367 253 IAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTSGSL 290 (826)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~ 290 (826)
++....-..+ +++.+-|++.+.|..-++..+-..
T Consensus 178 ka~~~~~~l~----~ev~~~L~~~~~~d~r~l~~~l~~ 211 (234)
T PRK05642 178 RASRRGLHLT----DEVGHFILTRGTRSMSALFDLLER 211 (234)
T ss_pred HHHHcCCCCC----HHHHHHHHHhcCCCHHHHHHHHHH
Confidence 6644322111 577788888888877665554433
No 96
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.37 E-value=6.7e-06 Score=80.05 Aligned_cols=173 Identities=19% Similarity=0.250 Sum_probs=106.4
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
.+|+|.++-++++.-++..... .+..+-.|.++|++|.||||||.-+++... ..+. ++.........-+..|+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~Emg--vn~k----~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANELG--VNLK----ITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHHhc--CCeE----ecccccccChhhHHHHH
Confidence 5699999999988777765432 345677899999999999999999999443 3221 22111111111122222
Q ss_pred HHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcC--------CCCCcEEE-----------
Q 003367 158 ESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKF--------GSPESRIL----------- 218 (826)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~--------~~~~s~ii----------- 218 (826)
..+ .+.=++.+|.++.-.+..-+-+...+.. .++++|.|
T Consensus 99 t~L----------------------e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIG 156 (332)
T COG2255 99 TNL----------------------EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIG 156 (332)
T ss_pred hcC----------------------CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEee
Confidence 222 1233666788866544333333333322 13444443
Q ss_pred EecccHHHHhhccc--cceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchh
Q 003367 219 VTTRKEDVAKMMRT--TSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLA 283 (826)
Q Consensus 219 vTtR~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLa 283 (826)
.|||...+...+.. .-+.+++.-+.+|-.++..+.|..-..... .+.+.+|+++..|-|--
T Consensus 157 ATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~----~~~a~eIA~rSRGTPRI 219 (332)
T COG2255 157 ATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEID----EEAALEIARRSRGTPRI 219 (332)
T ss_pred eccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCC----hHHHHHHHHhccCCcHH
Confidence 58997655444322 346778888999999999888743333222 56788899999999964
No 97
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.37 E-value=1.5e-05 Score=84.71 Aligned_cols=197 Identities=15% Similarity=0.074 Sum_probs=115.5
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEE---EEeCCCCCHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIW---VCFSDPVDEIRVAK 154 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~w---v~~~~~~~~~~~~~ 154 (826)
.+++|.++..+.+.+.+.... -...+.++|+.|+||+|+|..+++..-.......... .............+
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~ 93 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVAR 93 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHH
Confidence 468999999999999886542 3456889999999999999999874322111000000 00000000001111
Q ss_pred HHHHHh-------c----ccc---hhhhhHHHHHHHHHHHh-----cCCceeEEeccCCCCChhhHHHHHhhhcCCCCCc
Q 003367 155 AILESF-------R----DVV---SAVAAFDTLLRHIEKSV-----KGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPES 215 (826)
Q Consensus 155 ~i~~~l-------~----~~~---~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s 215 (826)
.+...- . ... ...-.++++. .+.+.+ .+.+.++|+|++...+......+...+.....++
T Consensus 94 ~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~ 172 (365)
T PRK07471 94 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS 172 (365)
T ss_pred HHHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence 111100 0 000 0111233322 222332 2566799999998777888888888887666667
Q ss_pred EEEEecccHH-HHhhc-cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHHh
Q 003367 216 RILVTTRKED-VAKMM-RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTSG 288 (826)
Q Consensus 216 ~iivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~ 288 (826)
.+|++|.... +.... .....+.+.+++.++..+++...... .. .+....+++.++|.|+....+.
T Consensus 173 ~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~----~~----~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 173 LFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD----LP----DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc----CC----HHHHHHHHHHcCCCHHHHHHHh
Confidence 6777666543 33222 23568999999999999999875311 11 1222678999999998665543
No 98
>PLN03150 hypothetical protein; Provisional
Probab=98.36 E-value=9.8e-07 Score=101.52 Aligned_cols=98 Identities=18% Similarity=0.223 Sum_probs=83.8
Q ss_pred hhhhchhhhccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCc
Q 003367 450 ADIALPSLFDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLH 529 (826)
Q Consensus 450 l~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~ 529 (826)
+...+|..+.++++|+.|+|+ +|...+.+|..++.+++|++|+|++|.+.+.+|+.+++|++|++|+|++|.+.+
T Consensus 430 L~g~ip~~i~~L~~L~~L~Ls-----~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g 504 (623)
T PLN03150 430 LRGFIPNDISKLRHLQSINLS-----GNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG 504 (623)
T ss_pred ccccCCHHHhCCCCCCEEECC-----CCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccc
Confidence 334568889999999999999 442334689899999999999999999888999999999999999999999999
Q ss_pred ccchhhhcc-cCCCeeeecCcccc
Q 003367 530 ALPQGIAKL-INLRHLINEGTPLL 552 (826)
Q Consensus 530 ~lp~~i~~L-~~L~~L~l~~~~l~ 552 (826)
.+|..++.+ .++..+++.+|...
T Consensus 505 ~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 505 RVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred cCChHHhhccccCceEEecCCccc
Confidence 999998764 56788888887643
No 99
>PRK09087 hypothetical protein; Validated
Probab=98.36 E-value=3.3e-06 Score=83.66 Aligned_cols=141 Identities=13% Similarity=0.198 Sum_probs=87.3
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCC
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGK 184 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 184 (826)
.+.+.|+|..|+|||+|++.++.... ..|++.. .+..++... +.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~~---------------------~~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAANA---------------------AAE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHHh---------------------hhc-
Confidence 35689999999999999999997421 2244321 111111111 111
Q ss_pred ceeEEeccCCCCChhhHHHHHhhhcC-CCCCcEEEEeccc---------HHHHhhccccceEEccCCCCchhHHHHHHhh
Q 003367 185 KFLLVLDDVWSGNPTKWEELVSTLKF-GSPESRILVTTRK---------EDVAKMMRTTSMILLAKLPDNDCWSLFSQIA 254 (826)
Q Consensus 185 ~~LlVlDdv~~~~~~~~~~l~~~~~~-~~~~s~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 254 (826)
-+|++||+..... .-+.+...+.. ...|..||+|++. +.+...+.....++++++++++-.+++.+.+
T Consensus 89 -~~l~iDDi~~~~~-~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 -GPVLIEDIDAGGF-DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred -CeEEEECCCCCCC-CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 2888999954211 11334333332 2336678888873 2233344556789999999999999999887
Q ss_pred hcCCCcccchhhHHHHHHHHHhcCCCchhHHH
Q 003367 255 FSGRTTEECQKLTDIGRMIADKCNGLPLAAKT 286 (826)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~ 286 (826)
-...-..+ +++.+-|++.+.|..-++..
T Consensus 167 ~~~~~~l~----~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 167 ADRQLYVD----PHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHcCCCCC----HHHHHHHHHHhhhhHHHHHH
Confidence 54322222 56778888888887776664
No 100
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=1.5e-05 Score=85.46 Aligned_cols=183 Identities=13% Similarity=0.107 Sum_probs=111.0
Q ss_pred CccccchHHHHHHHHHHcCCCCC----CCCCccEEEEEecCCCcHHHHHHHHhccccccc-------------------C
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQ----EKMSLPIISILGTGGVGKTTLARLVFNEVKVDA-------------------H 134 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~ 134 (826)
.+++|.+..++.|...+..+... +..-..-+.++|+.|+||||+|+.++....... |
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 45889999999999999764310 011345688999999999999999987432111 1
Q ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHH-hcCCceeEEeccCCCCChhhHHHHHhhhcCCCC
Q 003367 135 FDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKS-VKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSP 213 (826)
Q Consensus 135 f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~ 213 (826)
.| +.++.... ......++.++.+..... ..+++-++|+|++..-+......+...+....+
T Consensus 85 pD-~~~i~~~~-----------------~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~ 146 (394)
T PRK07940 85 PD-VRVVAPEG-----------------LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPP 146 (394)
T ss_pred CC-EEEecccc-----------------ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCC
Confidence 11 11111100 000111122222222211 134556888999977666676778777776666
Q ss_pred CcEEEEecccH-HHHhhc-cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHH
Q 003367 214 ESRILVTTRKE-DVAKMM-RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTS 287 (826)
Q Consensus 214 ~s~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 287 (826)
+..+|++|.+. .+...+ .....+.+.+++.++..+.+..... .. .+.+..+++.++|.|.....+
T Consensus 147 ~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~-----~~----~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 147 RTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG-----VD----PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-----CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 77666666553 333322 2246899999999999888864321 11 345678999999999755444
No 101
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.35 E-value=3.6e-06 Score=90.69 Aligned_cols=179 Identities=15% Similarity=0.153 Sum_probs=99.7
Q ss_pred CccccchHHHHHHHHHHcCCCCC-------CCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQ-------EKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEI 150 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 150 (826)
.++.|+++.+++|.+.+...-.. +-...+-|.|+|++|+|||++|+++++.. ...| +.+.. .
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l--~~~~-----~~v~~----~ 190 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET--NATF-----IRVVG----S 190 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC--CCCE-----Eecch----H
Confidence 45899999999998877532110 11235569999999999999999999843 2332 22211 1
Q ss_pred HHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCC-----------Chh---hHHHHHhhhcC--CCCC
Q 003367 151 RVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSG-----------NPT---KWEELVSTLKF--GSPE 214 (826)
Q Consensus 151 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~---~~~~l~~~~~~--~~~~ 214 (826)
.+.... ++. ....+...+...-...+.+|++|+++.- +.. .+..+...+.. ...+
T Consensus 191 ~l~~~~---~g~------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~ 261 (364)
T TIGR01242 191 ELVRKY---IGE------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGN 261 (364)
T ss_pred HHHHHh---hhH------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCC
Confidence 111110 110 0011111222222346789999998531 111 12222222221 1346
Q ss_pred cEEEEecccHHHH-----hhccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCc
Q 003367 215 SRILVTTRKEDVA-----KMMRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLP 281 (826)
Q Consensus 215 s~iivTtR~~~v~-----~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glP 281 (826)
.+||.||...... .....+..+.+...+.++..++|..++.+.... .... ...+++.+.|..
T Consensus 262 v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 262 VKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVD----LEAIAKMTEGAS 328 (364)
T ss_pred EEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCC----HHHHHHHcCCCC
Confidence 6788888754322 111225678999999999999999877543321 1112 245777777754
No 102
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.35 E-value=2.9e-05 Score=77.97 Aligned_cols=205 Identities=17% Similarity=0.139 Sum_probs=123.3
Q ss_pred CCccccchH---HHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccC----CCcEEEEEeCCCCCH
Q 003367 77 VSKVRGRDE---EKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAH----FDKRIWVCFSDPVDE 149 (826)
Q Consensus 77 ~~~~vGr~~---~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~ 149 (826)
.+.++|-.. .++++.+++..+. ....+-+.|||.+|+|||++++++++..-.... --.++.|......+.
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~ 109 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDE 109 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCCh
Confidence 455677553 3566677776653 346677999999999999999999874321111 114667778888999
Q ss_pred HHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcC-CceeEEeccCCCC---ChhhHHH---HHhhhcCCCCCcEEEEecc
Q 003367 150 IRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKG-KKFLLVLDDVWSG---NPTKWEE---LVSTLKFGSPESRILVTTR 222 (826)
Q Consensus 150 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~---~~~~~~~---l~~~~~~~~~~s~iivTtR 222 (826)
..++..|+.+++...........+.....+.++. +--+||+|++++- ...+-.. ....+.+.-.=+-|.+-|+
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 9999999999998766655556555555555543 4448999999651 1111122 2333333334455666665
Q ss_pred cHHHHhhcc-----ccceEEccCCCCch-hHHHHHHhh--hcCCCcccchhhHHHHHHHHHhcCCCchhHH
Q 003367 223 KEDVAKMMR-----TTSMILLAKLPDND-CWSLFSQIA--FSGRTTEECQKLTDIGRMIADKCNGLPLAAK 285 (826)
Q Consensus 223 ~~~v~~~~~-----~~~~~~l~~L~~~~-~~~lf~~~a--~~~~~~~~~~~~~~~~~~i~~~~~glPLal~ 285 (826)
+-.-+-..+ --..+.+.....++ ...|+.... ..-..+. .-...++++.|...++|+.--+.
T Consensus 190 ~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S-~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 190 EAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPS-NLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHHHcCCchHHHH
Confidence 432221111 12356677766544 444543321 1111111 12347889999999999875443
No 103
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.34 E-value=9.4e-07 Score=91.67 Aligned_cols=88 Identities=15% Similarity=0.216 Sum_probs=59.9
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCC--CHHHHHHHHHHHhcccchh---hhhH---HHHHHHH
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPV--DEIRVAKAILESFRDVVSA---VAAF---DTLLRHI 177 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~---~~~~---~~~~~~l 177 (826)
+.++|+|++|+||||||+++|++.... +|+.++||.+.+.. .+.++++.+...+-....+ .... ....+.-
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 468999999999999999999976544 89999999998887 6777777776322111111 1111 1112222
Q ss_pred HHH-hcCCceeEEeccCC
Q 003367 178 EKS-VKGKKFLLVLDDVW 194 (826)
Q Consensus 178 ~~~-l~~k~~LlVlDdv~ 194 (826)
+.. -.+++++|++|++.
T Consensus 249 e~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 249 KRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHcCCCEEEEEEChH
Confidence 222 26899999999993
No 104
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.34 E-value=8.9e-08 Score=95.35 Aligned_cols=259 Identities=22% Similarity=0.197 Sum_probs=135.4
Q ss_pred hhccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCC---Cccccchh-------hcCCCCCcEEeccCCC
Q 003367 457 LFDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNND---AIYELPEA-------LCDLCNLQTLDVSNCG 526 (826)
Q Consensus 457 ~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~---~~~~lp~~-------i~~L~~L~~L~L~~~~ 526 (826)
....+..+..++|++|.+.-- ....+-..+.+.++|+.-++++-- ...++|+. +-+.++|++||||.|-
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~E-Aa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTE-AARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HhcccCceEEEeccCCchhHH-HHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 345566667777775544211 222234445556666666666531 11233332 3345577777777776
Q ss_pred CCcccchh----hhcccCCCeeeecCcccccCCcc-CCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcc
Q 003367 527 NLHALPQG----IAKLINLRHLINEGTPLLYLPKG-LERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTA 601 (826)
Q Consensus 527 ~~~~lp~~----i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~ 601 (826)
+-..-+.. +..+..|++|.+.+|.+...-.. ++ ..|++|. .+.. .++.. .|+.+ +..
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--~al~~l~--~~kk---~~~~~---~Lrv~--------i~~ 165 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--RALFELA--VNKK---AASKP---KLRVF--------ICG 165 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--HHHHHHH--HHhc---cCCCc---ceEEE--------Eee
Confidence 44333333 34556677777766655421110 11 0111111 0000 00000 00000 000
Q ss_pred cCCCCC-hhhhhhhhccCCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCC----CCcccCcc
Q 003367 602 LGNVTD-VGEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIIS----PSWLMSLT 676 (826)
Q Consensus 602 l~~~~~-~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~----p~~l~~l~ 676 (826)
-..+.+ -.......+...+.|+.+.+..|.+.... ..-....+..+++|+.|+|.+|.++... -..++.++
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG----~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~ 241 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEG----VTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP 241 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCch----hHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc
Confidence 000111 11223344566678888888888765443 1345567888999999999999886532 23345678
Q ss_pred CCcEEEEecCCCCCC--CC----CCCCCCccceeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccc
Q 003367 677 ELRMLNLQRCGKCEQ--LP----SLGRLPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMD 748 (826)
Q Consensus 677 ~L~~L~L~~~~~~~~--l~----~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 748 (826)
+|+.|++++|.+... .. .-...|+|+.|.+.++..-..-...+. ......|.|+.|.|++|.
T Consensus 242 ~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la----------~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 242 HLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALA----------ACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred hheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHH----------HHHhcchhhHHhcCCccc
Confidence 999999999987532 11 123478999999986552211111110 112247899999999994
No 105
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.34 E-value=8.4e-06 Score=81.63 Aligned_cols=157 Identities=24% Similarity=0.290 Sum_probs=95.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcC
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKG 183 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 183 (826)
....+.+||++|+||||||+.++...+ .+ ...||..+.......-.++|+++-. -...+.+
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk--~~--SyrfvelSAt~a~t~dvR~ife~aq---------------~~~~l~k 221 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSK--KH--SYRFVELSATNAKTNDVRDIFEQAQ---------------NEKSLTK 221 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcC--CC--ceEEEEEeccccchHHHHHHHHHHH---------------HHHhhhc
Confidence 566788999999999999999998443 22 1446666654433333444443321 1123467
Q ss_pred CceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEE--ecccHHH---HhhccccceEEccCCCCchhHHHHHHhhh---
Q 003367 184 KKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILV--TTRKEDV---AKMMRTTSMILLAKLPDNDCWSLFSQIAF--- 255 (826)
Q Consensus 184 k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iiv--TtR~~~v---~~~~~~~~~~~l~~L~~~~~~~lf~~~a~--- 255 (826)
+|.+|.+|.|+.-+..+-+. .++....|.-++| ||-++.. +..+....++.+++|+.++...++.+...
T Consensus 222 rkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~ 298 (554)
T KOG2028|consen 222 RKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLG 298 (554)
T ss_pred ceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhc
Confidence 89999999997655433332 3455567776665 6666542 22234467899999999999888877321
Q ss_pred cCC---Ccccch---hhHHHHHHHHHhcCCCch
Q 003367 256 SGR---TTEECQ---KLTDIGRMIADKCNGLPL 282 (826)
Q Consensus 256 ~~~---~~~~~~---~~~~~~~~i~~~~~glPL 282 (826)
... .+.+.+ -...+.+-++..|+|-.-
T Consensus 299 dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 299 DSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred cccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 111 111111 123455666777777654
No 106
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1e-05 Score=91.18 Aligned_cols=199 Identities=18% Similarity=0.218 Sum_probs=113.0
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEE-eCCCCCHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVC-FSDPVDEIRVAKAI 156 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i 156 (826)
.+++|.+..++.|...+.... -...+.++|+.|+||||+|+.+++.......++...|.. ...+.........+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 468999999999999885432 234588999999999999999988543221111000110 00111111111111
Q ss_pred HHHhcc-----cchhhhhHHHHHHHHHHH----hcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEec-ccHHH
Q 003367 157 LESFRD-----VVSAVAAFDTLLRHIEKS----VKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTT-RKEDV 226 (826)
Q Consensus 157 ~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTt-R~~~v 226 (826)
..--.. .......++++.+.+... ..+++-++|+|+++.-.....+.+...+......+.+|++| +...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 110000 000111123332222221 23556689999997666667788888887765666655544 44444
Q ss_pred Hhh-ccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCch-hHH
Q 003367 227 AKM-MRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPL-AAK 285 (826)
Q Consensus 227 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPL-al~ 285 (826)
... ......+++.+++.++....+.+.+...+...+ .+.++.|++.++|..- |+.
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~----~eal~~La~~s~Gdlr~al~ 227 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID----ADALQLIARKAQGSMRDAQS 227 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHHHHHH
Confidence 332 233568999999999988887776543222122 4667889999999554 444
No 107
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=2.1e-05 Score=86.80 Aligned_cols=179 Identities=17% Similarity=0.185 Sum_probs=113.9
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccC------------------CC-cE
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAH------------------FD-KR 138 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~------------------f~-~~ 138 (826)
.+++|-+...+.+...+... .-..+..++|+.|+||||+|+.+++..-.... +. .+
T Consensus 14 deiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 46899999999999988543 23446689999999999999998874321110 00 01
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHH----hcCCceeEEeccCCCCChhhHHHHHhhhcCCCCC
Q 003367 139 IWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKS----VKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPE 214 (826)
Q Consensus 139 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~ 214 (826)
+.+...... .++++.+.+... ..+++-++|+|+++.-+.+..+.++..+....+.
T Consensus 89 ~eldaas~~---------------------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~ 147 (535)
T PRK08451 89 IEMDAASNR---------------------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSY 147 (535)
T ss_pred EEecccccc---------------------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCc
Confidence 111111111 122222222211 1245668999999777777888888888776677
Q ss_pred cEEEEecccH-HHHhh-ccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHH
Q 003367 215 SRILVTTRKE-DVAKM-MRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKT 286 (826)
Q Consensus 215 s~iivTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~ 286 (826)
+++|++|.+. .+... ......+++.+++.++..+.+.+.+...+.... .+.++.|++.++|.+.-+..
T Consensus 148 t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~----~~Al~~Ia~~s~GdlR~aln 217 (535)
T PRK08451 148 VKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE----PEALEILARSGNGSLRDTLT 217 (535)
T ss_pred eEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHH
Confidence 7777776653 22221 122468999999999998888776644332222 46678899999998854433
No 108
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.32 E-value=4.8e-07 Score=69.15 Aligned_cols=58 Identities=38% Similarity=0.510 Sum_probs=33.4
Q ss_pred CccEEEccCCCCccccc-hhhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCcc
Q 003367 492 HLRYLNLSNNDAIYELP-EALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTP 550 (826)
Q Consensus 492 ~L~~L~Ls~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 550 (826)
+|++|++++|. +..+| ..|.++++|++|++++|.+...-|..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 55666666665 44444 345566666666666666433334455666666666666654
No 109
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.32 E-value=1.6e-05 Score=92.76 Aligned_cols=190 Identities=13% Similarity=0.158 Sum_probs=112.9
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
.+++|.+..++.|..++.... -...+.++|..|+||||+|+.+++.......... ...........|.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pCg~C~sC~~~~ 82 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPCGECDSCVALA 82 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCCcccHHHHHHH
Confidence 468999999999999986532 3346789999999999999999885432111100 0000000011110
Q ss_pred HH---------hcc-cchhhhhHHHHHHHHH-HHhcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecc-cHH
Q 003367 158 ES---------FRD-VVSAVAAFDTLLRHIE-KSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTR-KED 225 (826)
Q Consensus 158 ~~---------l~~-~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR-~~~ 225 (826)
.. +.. ......++.++.+.+. .-..++.-++|||+++..+...++.|+..+......+.+|++|. ...
T Consensus 83 ~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 83 PGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred cCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 00 000 0001112222222111 11235666899999987777888889888887666777666554 334
Q ss_pred HHhhc-cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchh
Q 003367 226 VAKMM-RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLA 283 (826)
Q Consensus 226 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLa 283 (826)
+...+ .....|++..++.++..+.+.+.+-......+ .+....|++.++|.+..
T Consensus 163 Ll~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id----~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 163 VIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVE----PGVLPLVIRAGGGSVRD 217 (824)
T ss_pred hhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHH
Confidence 44332 23568999999999988888776533222111 45567789999998743
No 110
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.32 E-value=1.5e-05 Score=87.41 Aligned_cols=169 Identities=14% Similarity=0.136 Sum_probs=101.8
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCC
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGK 184 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 184 (826)
..-+.|+|..|+|||+|++++++.......-..+++++ ..++...+...+.... .....+.+.++ .
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~-~ 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEIC-Q 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhc-c
Confidence 34689999999999999999998432212122344543 3456666666554210 11222333333 3
Q ss_pred ceeEEeccCCCCCh-hhH-HHHHhhhcC-CCCCcEEEEecccH-H--------HHhhccccceEEccCCCCchhHHHHHH
Q 003367 185 KFLLVLDDVWSGNP-TKW-EELVSTLKF-GSPESRILVTTRKE-D--------VAKMMRTTSMILLAKLPDNDCWSLFSQ 252 (826)
Q Consensus 185 ~~LlVlDdv~~~~~-~~~-~~l~~~~~~-~~~~s~iivTtR~~-~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~ 252 (826)
.-+||+||+..... ..+ +.+...+.. ...|..||+|+... . +...+...-++++++++.++-.+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 45889999954321 222 334443332 23445688886642 1 222233455788999999999999998
Q ss_pred hhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHHhh
Q 003367 253 IAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTSGS 289 (826)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~ 289 (826)
++-..+.. ..--+++..-|++.++|.|-.+.-+..
T Consensus 287 ~~~~~gl~--~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 287 EIKNQNIK--QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHhcCCC--CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 87432210 012267788899999999987766543
No 111
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.31 E-value=1.1e-05 Score=79.52 Aligned_cols=164 Identities=13% Similarity=0.185 Sum_probs=94.2
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcC
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKG 183 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 183 (826)
....+.|+|..|+|||.|.+++++.......-..++|++ ..++...+...+... .. ..+.+.++
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~-----~~----~~~~~~~~- 96 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRDG-----EI----EEFKDRLR- 96 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHTT-----SH----HHHHHHHC-
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHcc-----cc----hhhhhhhh-
Confidence 455689999999999999999999543211212355664 345555555554331 11 22333333
Q ss_pred CceeEEeccCCCCC-hhhHHH-HHhhhcC-CCCCcEEEEecccHH---------HHhhccccceEEccCCCCchhHHHHH
Q 003367 184 KKFLLVLDDVWSGN-PTKWEE-LVSTLKF-GSPESRILVTTRKED---------VAKMMRTTSMILLAKLPDNDCWSLFS 251 (826)
Q Consensus 184 k~~LlVlDdv~~~~-~~~~~~-l~~~~~~-~~~~s~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~ 251 (826)
.-=+|++||++.-. ...|+. +...+.. ...|.+||+|++... +...+...-.+++.+.++++..+++.
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~ 176 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQ 176 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHH
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHH
Confidence 34488999995422 223333 3333322 234668999996431 22334456689999999999999999
Q ss_pred HhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHH
Q 003367 252 QIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTS 287 (826)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 287 (826)
+.+....-.-+ +++++-|++.+.+..-.+..+
T Consensus 177 ~~a~~~~~~l~----~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 177 KKAKERGIELP----EEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHHTT--S-----HHHHHHHHHHTTSSHHHHHHH
T ss_pred HHHHHhCCCCc----HHHHHHHHHhhcCCHHHHHHH
Confidence 88765443322 566777777777665555443
No 112
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=2.4e-08 Score=96.82 Aligned_cols=181 Identities=19% Similarity=0.173 Sum_probs=104.6
Q ss_pred CccEEEccCCCCcc-ccchhhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecC-cccccCCccCCCCCCCCcCCc
Q 003367 492 HLRYLNLSNNDAIY-ELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEG-TPLLYLPKGLERLTCLRTLSE 569 (826)
Q Consensus 492 ~L~~L~Ls~~~~~~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~-~~l~~lp~~i~~L~~L~~L~~ 569 (826)
.|++||||...+.. .+-.-++.+.+|+.|.|.++++-..+-..+.+-.+|+.|+++. +.+++..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~-------------- 251 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENA-------------- 251 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhH--------------
Confidence 47788887765321 2334455667777777777775555556666666677777663 2332111
Q ss_pred eeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCCcCCceeeEeecCCCcccccchHHHhhcCC
Q 003367 570 FTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQ 649 (826)
Q Consensus 570 ~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~ 649 (826)
...-+.+++.|..|+++|+.+..... ......+
T Consensus 252 ------------------------------------------~~ll~~scs~L~~LNlsWc~l~~~~V----tv~V~hi- 284 (419)
T KOG2120|consen 252 ------------------------------------------LQLLLSSCSRLDELNLSWCFLFTEKV----TVAVAHI- 284 (419)
T ss_pred ------------------------------------------HHHHHHhhhhHhhcCchHhhccchhh----hHHHhhh-
Confidence 11123344455555555555432211 1111111
Q ss_pred CCCCcCeEEEeccCCCCC---CCCcccCccCCcEEEEecCCCCCC--CCCCCCCCccceeeccccccceEeCcccccCCC
Q 003367 650 PSPDLEKLTICDYKSKII---SPSWLMSLTELRMLNLQRCGKCEQ--LPSLGRLPSLESLVVEALSSVRRVGNEFLGIES 724 (826)
Q Consensus 650 ~~~~L~~L~L~~~~~~~~---~p~~l~~l~~L~~L~L~~~~~~~~--l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 724 (826)
-++|+.|+|+|+.-.-. +..-...+++|..|||++|...+. +..+.+++.|++|.+++|+.+. ++.+...
T Consensus 285 -se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~--p~~~~~l-- 359 (419)
T KOG2120|consen 285 -SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII--PETLLEL-- 359 (419)
T ss_pred -chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC--hHHeeee--
Confidence 25778888887753221 011123688899999998875543 2257788889999999888653 4444432
Q ss_pred CccccCccCcCCCccceeecccc
Q 003367 725 DDISLSSSSVVFPKLKFLEFRDM 747 (826)
Q Consensus 725 ~~~~~~~~~~~~~~L~~L~l~~~ 747 (826)
...|+|.+|++.+|
T Consensus 360 ---------~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 360 ---------NSKPSLVYLDVFGC 373 (419)
T ss_pred ---------ccCcceEEEEeccc
Confidence 35788888888877
No 113
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=2.7e-05 Score=87.25 Aligned_cols=196 Identities=13% Similarity=0.149 Sum_probs=116.7
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++........+ + .+.........|.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~----~pCg~C~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---A----TPCGVCESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C----CcccccHHHHHhh
Confidence 468999999999999986432 334578999999999999999997433211100 0 0111111111111
Q ss_pred HH---------hcc-cchhhhhHHHHHHHHHHH-hcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEec-ccHH
Q 003367 158 ES---------FRD-VVSAVAAFDTLLRHIEKS-VKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTT-RKED 225 (826)
Q Consensus 158 ~~---------l~~-~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTt-R~~~ 225 (826)
.. +.. ......++.++.+.+... ..+++-++|+|+++.-+....+.++..+........+|++| ....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 00 000 001122222232222211 13566699999998777788888888888766666666555 4444
Q ss_pred HHhhc-cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCch-hHHHHhh
Q 003367 226 VAKMM-RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPL-AAKTSGS 289 (826)
Q Consensus 226 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPL-al~~~~~ 289 (826)
+...+ .....+++..++.++..+.+.+.+...+...+ .+....|++.++|.+- |+..+-.
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~----~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD----DAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 44322 22568999999999988888776644332222 4556778899999774 4444443
No 114
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.28 E-value=3.1e-05 Score=87.85 Aligned_cols=193 Identities=16% Similarity=0.239 Sum_probs=112.8
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCC-c-EEEEE---eCCCCCHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFD-K-RIWVC---FSDPVDEIRV 152 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~-~~wv~---~~~~~~~~~~ 152 (826)
.+++|.+..++.+...+.... -...+.++|+.|+||||+|+.++...-.....+ + .+-.| .....+...
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvie- 91 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIE- 91 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEE-
Confidence 458999999999999986532 345678999999999999999987432111100 0 00000 000000000
Q ss_pred HHHHHHHhcc-cchhhhhHHHHHHHHHHH-hcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEE-EecccHHHHhh
Q 003367 153 AKAILESFRD-VVSAVAAFDTLLRHIEKS-VKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRIL-VTTRKEDVAKM 229 (826)
Q Consensus 153 ~~~i~~~l~~-~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~ii-vTtR~~~v~~~ 229 (826)
+.. ......++.++.+.+... ..+++-++|+|+++.-....+..++..+........+| +|++...+...
T Consensus 92 -------idaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 92 -------MDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred -------EeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 000 000112223333333221 23566799999997666777888888877655555555 45444444432
Q ss_pred -ccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCch-hHHHH
Q 003367 230 -MRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPL-AAKTS 287 (826)
Q Consensus 230 -~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPL-al~~~ 287 (826)
......+++.+++.++..+.+...+-..+...+ .+.++.|++.++|.+- |+..+
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id----~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKENISYE----KNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 223468999999999998888776543322222 4557789999998664 44443
No 115
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=2.4e-05 Score=84.65 Aligned_cols=178 Identities=17% Similarity=0.235 Sum_probs=106.2
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccc------cCCCc-EEEEEeCCCCCHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVD------AHFDK-RIWVCFSDPVDEI 150 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~------~~f~~-~~wv~~~~~~~~~ 150 (826)
.+++|.+...+.+...+.... -.+.+.++|+.|+||||+|+.+++..... ..|.. ++.+......+..
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 91 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVD 91 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHH
Confidence 468999999999999986431 34578899999999999999998743211 11211 1111111111111
Q ss_pred HHHHHHHHHhcccchhhhhHHHHHHHHHH-HhcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecc-cHHHHh
Q 003367 151 RVAKAILESFRDVVSAVAAFDTLLRHIEK-SVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTR-KEDVAK 228 (826)
Q Consensus 151 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR-~~~v~~ 228 (826)
++.++.+.+.. -..+++-+||+|++.......++.+...+........+|+++. ...+..
T Consensus 92 ------------------~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~ 153 (367)
T PRK14970 92 ------------------DIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153 (367)
T ss_pred ------------------HHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCH
Confidence 11111111111 1134556899999965555567777776655444556665553 323322
Q ss_pred h-ccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCch
Q 003367 229 M-MRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPL 282 (826)
Q Consensus 229 ~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPL 282 (826)
. ......+++.+++.++....+...+...+...+ .+.++.+++.++|.+-
T Consensus 154 ~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~----~~al~~l~~~~~gdlr 204 (367)
T PRK14970 154 TILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE----DDALHIIAQKADGALR 204 (367)
T ss_pred HHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhCCCCHH
Confidence 2 122457899999999998888877654332222 4667788889998665
No 116
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=2.2e-05 Score=89.23 Aligned_cols=178 Identities=16% Similarity=0.200 Sum_probs=112.7
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccc---------------------cCCC
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVD---------------------AHFD 136 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~f~ 136 (826)
.+++|.+..++.|...+.... -...+.++|+.|+||||+|+.++...... .+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 468999999999999986532 34567899999999999999988743211 1222
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHH-hcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCc
Q 003367 137 KRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKS-VKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPES 215 (826)
Q Consensus 137 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s 215 (826)
+..+.......+.. +.++.+.+... ..+++-++|+|++..-+...++.+...+......+
T Consensus 92 -~~~ld~~~~~~vd~------------------Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~t 152 (614)
T PRK14971 92 -IHELDAASNNSVDD------------------IRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYA 152 (614)
T ss_pred -eEEecccccCCHHH------------------HHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCe
Confidence 11222221111111 11111111110 13455688999997766777888888887766667
Q ss_pred EEEEec-ccHHHHhhc-cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchh
Q 003367 216 RILVTT-RKEDVAKMM-RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLA 283 (826)
Q Consensus 216 ~iivTt-R~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLa 283 (826)
.+|++| +...+...+ .....+++.+++.++....+...+-..+...+ .+.++.|++.++|..--
T Consensus 153 ifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~----~~al~~La~~s~gdlr~ 218 (614)
T PRK14971 153 IFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE----PEALNVIAQKADGGMRD 218 (614)
T ss_pred EEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHH
Confidence 766544 444444332 23568999999999999888876654332222 45677899999996653
No 117
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=1.5e-05 Score=90.83 Aligned_cols=194 Identities=16% Similarity=0.200 Sum_probs=114.5
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
.+++|.+..++.|..++.... -...+.++|..|+||||+|+.+++......... -............+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHh
Confidence 468999999999988886432 234578999999999999999997432111100 000111122223332
Q ss_pred HHhccc--------chhhhhHHHHHHHHHHH-hcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEeccc-HHHH
Q 003367 158 ESFRDV--------VSAVAAFDTLLRHIEKS-VKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRK-EDVA 227 (826)
Q Consensus 158 ~~l~~~--------~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~-~~v~ 227 (826)
...... .....++.++.+.+... ..+++-++|+|++..-.....+.+...+......+.+|+++.+ ..+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 211100 01111222222222211 1355678999999665566677787777766566677666543 3333
Q ss_pred hhc-cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHH
Q 003367 228 KMM-RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKT 286 (826)
Q Consensus 228 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~ 286 (826)
..+ .....+++..++.++....+...+...+.... .+.+..|++.++|.+..+..
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~----~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE----PGALEAIARAATGSMRDAEN 220 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 222 22457889999999888888877654332222 45677899999998865444
No 118
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.25 E-value=3.1e-06 Score=88.38 Aligned_cols=88 Identities=15% Similarity=0.229 Sum_probs=61.7
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCC--CCHHHHHHHHHH-----HhcccchhhhhH-HHHHHHH
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDP--VDEIRVAKAILE-----SFRDVVSAVAAF-DTLLRHI 177 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~-----~l~~~~~~~~~~-~~~~~~l 177 (826)
+.++|+|++|.|||||++.+++.... .+|+..+||.+.+. .++.++++.+.. .+.......... ....+..
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~A 247 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKA 247 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHH
Confidence 56899999999999999999996543 37999999999866 788899999843 333322111111 2222222
Q ss_pred HHH-hcCCceeEEeccCC
Q 003367 178 EKS-VKGKKFLLVLDDVW 194 (826)
Q Consensus 178 ~~~-l~~k~~LlVlDdv~ 194 (826)
+.. -.+++++|++|++.
T Consensus 248 e~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 248 KRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHcCCCeEEEEEChh
Confidence 222 26899999999994
No 119
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.24 E-value=9.6e-08 Score=97.19 Aligned_cols=291 Identities=17% Similarity=0.173 Sum_probs=155.4
Q ss_pred CCCcEEecccccccccccccc--ccccccCCCCccEEEccCCCCcccc--chhhcCCCCCcEEeccCCCCCccc--chhh
Q 003367 462 TCLRTLCLRCHERHFCLSIAR--LPRNIKKLKHLRYLNLSNNDAIYEL--PEALCDLCNLQTLDVSNCGNLHAL--PQGI 535 (826)
Q Consensus 462 ~~Lr~L~L~~~~~~~~~~~~~--lp~~i~~l~~L~~L~Ls~~~~~~~l--p~~i~~L~~L~~L~L~~~~~~~~l--p~~i 535 (826)
..||.|.++ ++...+. +-.....+++++.|++.+|..++.- -..-..+++|++|++..|..+... -...
T Consensus 138 g~lk~LSlr-----G~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la 212 (483)
T KOG4341|consen 138 GFLKELSLR-----GCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA 212 (483)
T ss_pred ccccccccc-----ccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH
Confidence 357777777 4433222 2223456777788888887655432 121234677888888877654432 1123
Q ss_pred hcccCCCeeeecCcccc-c--CCccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhh
Q 003367 536 AKLINLRHLINEGTPLL-Y--LPKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAK 612 (826)
Q Consensus 536 ~~L~~L~~L~l~~~~l~-~--lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~ 612 (826)
..+++|++|+++++.-. . +..-..+++.++.+...+|...+. ..+.
T Consensus 213 ~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~l-------e~l~------------------------ 261 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELEL-------EALL------------------------ 261 (483)
T ss_pred HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccH-------HHHH------------------------
Confidence 45677888887754322 1 111122333333333222211000 0000
Q ss_pred hhhccCCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCc--ccCccCCcEEEEecCCCCC
Q 003367 613 SAKLESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSW--LMSLTELRMLNLQRCGKCE 690 (826)
Q Consensus 613 ~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~--l~~l~~L~~L~L~~~~~~~ 690 (826)
..-..+..+..+++..++ .+ .+......-..+..|+.|..+++...+..+-| ..+.++|+.|-++.|+...
T Consensus 262 -~~~~~~~~i~~lnl~~c~----~l--TD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fs 334 (483)
T KOG4341|consen 262 -KAAAYCLEILKLNLQHCN----QL--TDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFS 334 (483)
T ss_pred -HHhccChHhhccchhhhc----cc--cchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhh
Confidence 000011111122221111 00 11222222334567888888877653321211 2367889999999988544
Q ss_pred CCC--C-CCCCCccceeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCCC
Q 003367 691 QLP--S-LGRLPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMP 767 (826)
Q Consensus 691 ~l~--~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~ 767 (826)
... . -.+.+.|+.+++.+|-.... ..+. ....++|.|+.|.++.|..+.+-.. .........+.
T Consensus 335 d~~ft~l~rn~~~Le~l~~e~~~~~~d--~tL~----------sls~~C~~lr~lslshce~itD~gi-~~l~~~~c~~~ 401 (483)
T KOG4341|consen 335 DRGFTMLGRNCPHLERLDLEECGLITD--GTLA----------SLSRNCPRLRVLSLSHCELITDEGI-RHLSSSSCSLE 401 (483)
T ss_pred hhhhhhhhcCChhhhhhcccccceehh--hhHh----------hhccCCchhccCChhhhhhhhhhhh-hhhhhcccccc
Confidence 332 2 34678888888886653221 1222 2234899999999999876554311 00012234678
Q ss_pred ccceeeecCCCCCCC-CCCCCcccCCcceEEEccccchHHHh
Q 003367 768 RLHRLKLDGCHKLKA-LPDHLLLTTKMNELTMNWCSVLKERY 808 (826)
Q Consensus 768 ~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~c~~l~~~~ 808 (826)
.|+.|.+++|+.+.. .-..+..+++|+.+++.+|..+.+.-
T Consensus 402 ~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 402 GLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEA 443 (483)
T ss_pred ccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhh
Confidence 899999999998653 22345567899999999999876553
No 120
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.23 E-value=7.2e-07 Score=68.17 Aligned_cols=59 Identities=27% Similarity=0.413 Sum_probs=50.3
Q ss_pred CCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC-CCCCCCccceeeccccc
Q 003367 652 PDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP-SLGRLPSLESLVVEALS 710 (826)
Q Consensus 652 ~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 710 (826)
|+|++|++++|.+..+++.+|..+++|++|+|++|.+....+ .+..+++|++|+++++.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 578999999999998877889999999999999998876555 78889999999988653
No 121
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=3.9e-05 Score=84.19 Aligned_cols=182 Identities=16% Similarity=0.189 Sum_probs=110.0
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhccccccc---------------------CCC
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDA---------------------HFD 136 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~f~ 136 (826)
.+++|.+..++.+...+.... -...+.++|+.|+||||+|+.+++...... +++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 468999999999999986432 235678999999999999999987432110 111
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHH-HhcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCc
Q 003367 137 KRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEK-SVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPES 215 (826)
Q Consensus 137 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s 215 (826)
.+++....... ..++.++.+.+.. -..+++-++|+|++........+.+...+.......
T Consensus 92 -~~~i~g~~~~g------------------id~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 92 -VLEIDGASHRG------------------IEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred -eEEeeccccCC------------------HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 11111111111 1111222211111 123567789999996555556677777777655566
Q ss_pred EEEEeccc-HHHHhhc-cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCch-hHHHH
Q 003367 216 RILVTTRK-EDVAKMM-RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPL-AAKTS 287 (826)
Q Consensus 216 ~iivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPL-al~~~ 287 (826)
.+|++|.. ..+...+ .....+++.+++.++....+...+-..+...+ .+.++.|++.++|.+- |+..+
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~----~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETS----REALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 67666543 3332221 22457899999999988888776543322222 4567889999999664 44443
No 122
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=5e-05 Score=86.36 Aligned_cols=195 Identities=17% Similarity=0.238 Sum_probs=113.6
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
.+++|.+..++.|..++.... -...+.++|..|+||||+|+.+++..-....... ...+.......+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-----~~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-----TPEPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-----CCCCCcccHHHHHHh
Confidence 468999999999999986532 2356789999999999999999985432111100 001111122222222
Q ss_pred HHhcc-----cchhhhhHHHHHHHHHHH----hcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecc-cHHHH
Q 003367 158 ESFRD-----VVSAVAAFDTLLRHIEKS----VKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTR-KEDVA 227 (826)
Q Consensus 158 ~~l~~-----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR-~~~v~ 227 (826)
..... .......++++.+.+... ..+++-++|+|+++.-....++.++..+........+|++|. ...+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 11110 000111222222222211 135566899999976666778888888876555565555444 33333
Q ss_pred hhc-cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHH
Q 003367 228 KMM-RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKT 286 (826)
Q Consensus 228 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~ 286 (826)
..+ .....+++..++.++....+.+.+........ .+.+..|++.++|.+..+..
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is----~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE----PEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 322 22457888899998888877776543322221 35577899999998764443
No 123
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=5.9e-05 Score=83.37 Aligned_cols=182 Identities=15% Similarity=0.206 Sum_probs=110.7
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhccccccc-------------------CCCcE
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDA-------------------HFDKR 138 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~ 138 (826)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.++....... .|..+
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 458899999999999986532 234567899999999999999987432100 01111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHH-hcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEE
Q 003367 139 IWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKS-VKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRI 217 (826)
Q Consensus 139 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~i 217 (826)
+++..+... ...+...+.+.+... ..+++-++|+|+++.-.....+.+...+....+...+
T Consensus 91 ~eidaas~~------------------gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 91 IEIDAASNR------------------GIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred EEEeCccCC------------------CHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 222211111 111122222222211 2356779999999766666677788777765556666
Q ss_pred EEec-ccHHHHhh-ccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHH
Q 003367 218 LVTT-RKEDVAKM-MRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKT 286 (826)
Q Consensus 218 ivTt-R~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~ 286 (826)
|++| +...+... ......+.+.+++.++....+...+-..+...+ .+.+..|++.++|.+..+..
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id----~~al~~La~~s~G~lr~al~ 219 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE----EKALDLLAQASEGGMRDAAS 219 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 5554 43333322 222457899999999988888876644332222 45667788999997764433
No 124
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.21 E-value=9e-06 Score=86.54 Aligned_cols=121 Identities=17% Similarity=0.174 Sum_probs=77.2
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
..+++.++..+.+...|... +.|.++|++|+|||++|+++++.......|+.+.||.+++..+..++...+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 45888999999999998653 3588999999999999999998665555778888999999888776654331
Q ss_pred HHhcccchhhhhHHHHHHHHHHHh--cCCceeEEeccCCCCChhh-HHHHHhhhc
Q 003367 158 ESFRDVVSAVAAFDTLLRHIEKSV--KGKKFLLVLDDVWSGNPTK-WEELVSTLK 209 (826)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~~-~~~l~~~~~ 209 (826)
-. +....... .-..+.+.+.. .++++++|+|++-..+... +..+...+.
T Consensus 247 P~-~vgy~~~~--G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 247 PN-GVGFRRKD--GIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred CC-CCCeEecC--chHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 10 00000000 01112222222 2478999999995444332 344444333
No 125
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.20 E-value=6e-05 Score=84.69 Aligned_cols=191 Identities=15% Similarity=0.167 Sum_probs=113.4
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
.+++|-+..++.+..++.... -...+.++|+.|+||||+|+.+++..-....... ..+... ..-+.|.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C----~~C~~i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGEC----SSCKSID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccc----hHHHHHH
Confidence 468999999999999986532 3456889999999999999999985422111000 000000 0001111
Q ss_pred HH-------hccc-chhhhhHHHHHHHHHH-HhcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEeccc-HHHH
Q 003367 158 ES-------FRDV-VSAVAAFDTLLRHIEK-SVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRK-EDVA 227 (826)
Q Consensus 158 ~~-------l~~~-~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~-~~v~ 227 (826)
.. +.+. .....++.++.+.+.. -..+++-++|+|+++.-+...++.+...+........+|++|.. ..+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 00 0000 0111122222222221 12456668999999776777788888888766666676665543 3333
Q ss_pred hhc-cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhH
Q 003367 228 KMM-RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAA 284 (826)
Q Consensus 228 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal 284 (826)
..+ .....+++.+++.++..+.+...+...+...+ .+.+..|++.++|.+-.+
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id----~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYE----DEALKWIAYKSTGSVRDA 217 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 322 22457899999999988888877644332222 566777999999987543
No 126
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.19 E-value=1.7e-05 Score=78.18 Aligned_cols=188 Identities=20% Similarity=0.207 Sum_probs=120.5
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcE-EEEEeCCCCCHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKR-IWVCFSDPVDEIRVAKAI 156 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~-~wv~~~~~~~~~~~~~~i 156 (826)
.+++|.+..+..+...+.. +...+...+|++|.|||+-|+++++..-....|.+. .-.++|......-+-.
T Consensus 36 de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~-- 107 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVRE-- 107 (346)
T ss_pred HhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhh--
Confidence 4689999999999998865 256789999999999999999999865544556443 2334444322220000
Q ss_pred HHHhcccchhhhhHHHHHHHHHHHh--cCCc-eeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEeccc-HHHHhhcc-
Q 003367 157 LESFRDVVSAVAAFDTLLRHIEKSV--KGKK-FLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRK-EDVAKMMR- 231 (826)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~-~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~-~~v~~~~~- 231 (826)
...+.+.+.....+.. .-++ -.||||+++....+.|..+...+......++.|+.+.. ..+...+.
T Consensus 108 ---------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 108 ---------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred ---------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 0111111111110000 0122 47899999887889999999999887777776554443 32222221
Q ss_pred ccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCc-hhHHH
Q 003367 232 TTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLP-LAAKT 286 (826)
Q Consensus 232 ~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glP-Lal~~ 286 (826)
...-|..++|.+++...-+...+-.++...+ .+..+.|++.++|-- -|+.+
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d----~~al~~I~~~S~GdLR~Ait~ 230 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGVDID----DDALKLIAKISDGDLRRAITT 230 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCcHHHHHHH
Confidence 1346889999999999999888866555444 566778999998843 34443
No 127
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.15 E-value=3.7e-05 Score=81.53 Aligned_cols=149 Identities=17% Similarity=0.192 Sum_probs=86.4
Q ss_pred CCccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHH
Q 003367 77 VSKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAI 156 (826)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 156 (826)
-.+++|.++..+.+..++... .-..++.++|++|+||||+|+++++.. .. .+..++.+. .... .....
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~~--~~---~~~~i~~~~-~~~~-~i~~~ 87 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNEV--GA---EVLFVNGSD-CRID-FVRNR 87 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHHh--Cc---cceEeccCc-ccHH-HHHHH
Confidence 357899999999999998643 234677779999999999999999843 21 123444443 1111 11111
Q ss_pred HHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCC-ChhhHHHHHhhhcCCCCCcEEEEecccHH-HHhhc-ccc
Q 003367 157 LESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSG-NPTKWEELVSTLKFGSPESRILVTTRKED-VAKMM-RTT 233 (826)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~~~~~~~~s~iivTtR~~~-v~~~~-~~~ 233 (826)
+..+. .. ..+.+.+-+||+||+... .....+.+...+.....+.++|+||.... +...+ ...
T Consensus 88 l~~~~-------------~~--~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 88 LTRFA-------------ST--VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred HHHHH-------------Hh--hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 11100 00 001234568999999544 22333445555555566788998887543 11111 112
Q ss_pred ceEEccCCCCchhHHHHHH
Q 003367 234 SMILLAKLPDNDCWSLFSQ 252 (826)
Q Consensus 234 ~~~~l~~L~~~~~~~lf~~ 252 (826)
..+.+...+.++..+++..
T Consensus 153 ~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred eEEEeCCCCHHHHHHHHHH
Confidence 3566767777776665543
No 128
>PRK06620 hypothetical protein; Validated
Probab=98.15 E-value=5.7e-05 Score=74.15 Aligned_cols=135 Identities=16% Similarity=0.109 Sum_probs=79.5
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCc
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKK 185 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 185 (826)
+.+.|+|++|+|||+|++.+++... . .++. ..... + +.. +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~~---------------------~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFFN---------------------E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhhc---------------------h-------hHH-hcC
Confidence 6789999999999999999887432 1 1211 00000 0 001 133
Q ss_pred eeEEeccCCCCChhhHHHHHhhhcC-CCCCcEEEEecccHH-------HHhhccccceEEccCCCCchhHHHHHHhhhcC
Q 003367 186 FLLVLDDVWSGNPTKWEELVSTLKF-GSPESRILVTTRKED-------VAKMMRTTSMILLAKLPDNDCWSLFSQIAFSG 257 (826)
Q Consensus 186 ~LlVlDdv~~~~~~~~~~l~~~~~~-~~~~s~iivTtR~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~ 257 (826)
-++++||++.... ..+...+.. ...|..||+|++... +...+...-+++++++++++-.+++.+.+...
T Consensus 87 d~lliDdi~~~~~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 87 NAFIIEDIENWQE---PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CEEEEeccccchH---HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 5789999952211 123222221 134568899887432 22223345589999999999888887776432
Q ss_pred CCcccchhhHHHHHHHHHhcCCCchhHH
Q 003367 258 RTTEECQKLTDIGRMIADKCNGLPLAAK 285 (826)
Q Consensus 258 ~~~~~~~~~~~~~~~i~~~~~glPLal~ 285 (826)
.-.-+ +++.+-|++.+.|---.+.
T Consensus 164 ~l~l~----~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 164 SVTIS----RQIIDFLLVNLPREYSKII 187 (214)
T ss_pred CCCCC----HHHHHHHHHHccCCHHHHH
Confidence 21111 5677778888877654443
No 129
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=0.00011 Score=82.98 Aligned_cols=190 Identities=17% Similarity=0.190 Sum_probs=110.2
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
.+++|.+..++.+..++.... -.+.+.++|+.|+||||+|+.+++.......-+ ..+.+.......|.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHh
Confidence 468999999999999986532 345677899999999999999987432111000 00111111111111
Q ss_pred HHhcc--------cchhhhhHHHHHHHHHHH-hcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEec-ccHHHH
Q 003367 158 ESFRD--------VVSAVAAFDTLLRHIEKS-VKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTT-RKEDVA 227 (826)
Q Consensus 158 ~~l~~--------~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTt-R~~~v~ 227 (826)
..... .......+.++.+.+... ..++.-++|+|+++.-....+..+...+........+|++| ....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 10000 001111222222222211 24566789999997666677888888776655555555544 443333
Q ss_pred hhc-cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchh
Q 003367 228 KMM-RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLA 283 (826)
Q Consensus 228 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLa 283 (826)
..+ .....+++.+++.++..+.+...+-..+...+ .+.+..|++.++|.+..
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~----~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE----DEALRLIARAAEGGMRD 216 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHH
Confidence 222 22457889999999988888776643332222 45677788888887753
No 130
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.12 E-value=4.6e-05 Score=79.51 Aligned_cols=212 Identities=16% Similarity=0.167 Sum_probs=126.4
Q ss_pred cCCccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHH
Q 003367 76 DVSKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKA 155 (826)
Q Consensus 76 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 155 (826)
.+..++||+.|+..+.+++...-+ .....-+.|.|-+|.|||.+...++.+......=-.++++.+..-....+++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 456799999999999999876543 335567999999999999999999986532222124577777776778889999
Q ss_pred HHHHhcccchhhhhHHHHHHHHHHHhcC--CceeEEeccCCCCChhhHHHHHhhhcC-CCCCcEEEEecccHHH------
Q 003367 156 ILESFRDVVSAVAAFDTLLRHIEKSVKG--KKFLLVLDDVWSGNPTKWEELVSTLKF-GSPESRILVTTRKEDV------ 226 (826)
Q Consensus 156 i~~~l~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~~~l~~~~~~-~~~~s~iivTtR~~~v------ 226 (826)
|...+...........+....+.+...+ .-+|+|+|..+.-....-+.+...|.| .-+++|+|+.--...+
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 9888732211111124445555555543 368999999832111122223334443 3467777654322111
Q ss_pred Hhhc-----cccceEEccCCCCchhHHHHHHhhhcCCCc-ccchhhHHHHHHHHHhcCCCchhHHHHhh
Q 003367 227 AKMM-----RTTSMILLAKLPDNDCWSLFSQIAFSGRTT-EECQKLTDIGRMIADKCNGLPLAAKTSGS 289 (826)
Q Consensus 227 ~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~-~~~~~~~~~~~~i~~~~~glPLal~~~~~ 289 (826)
...+ .....+..++-+.++-.++|..+.-..... ..+...+-.|++++.-.|-+--|+.+.-+
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ 374 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRR 374 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 1111 124567788999999999999886433221 22223333344444444444455544433
No 131
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=6.3e-05 Score=85.34 Aligned_cols=194 Identities=16% Similarity=0.223 Sum_probs=111.6
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
.+++|.+..++.|...+.... -...+.++|+.|+||||+|+.+++........+. .+.........|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHh
Confidence 468999999999999886431 2346689999999999999999874321111000 0000000011110
Q ss_pred HH-------hc-ccchhhhhHHHHHHHHHHH-hcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEec-ccHHHH
Q 003367 158 ES-------FR-DVVSAVAAFDTLLRHIEKS-VKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTT-RKEDVA 227 (826)
Q Consensus 158 ~~-------l~-~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTt-R~~~v~ 227 (826)
.. +. .......++.++.+.+... ..+++-++|+|+++.-+......+...+........+|++| ....+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 00 00 0001112222222222211 13455689999997666677788888887666666666544 444444
Q ss_pred hhc-cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCc-hhHHHH
Q 003367 228 KMM-RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLP-LAAKTS 287 (826)
Q Consensus 228 ~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glP-Lal~~~ 287 (826)
..+ .....+++.+++.++....+...+-..+...+ .+....|++.++|.. .|+..+
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~----~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS----DAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 332 23457889999998888877766543322222 456677889999865 444444
No 132
>PF14516 AAA_35: AAA-like domain
Probab=98.10 E-value=0.00022 Score=75.45 Aligned_cols=202 Identities=12% Similarity=0.118 Sum_probs=118.2
Q ss_pred cCCccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCC-----CCHH
Q 003367 76 DVSKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDP-----VDEI 150 (826)
Q Consensus 76 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~ 150 (826)
+.+..|.|...-+++.+.+..+. ..+.|.|+-.+|||+|...+.+..+.. .| .++++++... .+..
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~G-------~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~ 79 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQPG-------SYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLE 79 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcCC-------CEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHH
Confidence 34557789966677777775532 479999999999999999998854422 33 4567777652 2455
Q ss_pred HHHHHHHHHh----cccch--hh-----hhHHHHHHHHHHHh---cCCceeEEeccCCCCC--hhhHHHHHh---hh-cC
Q 003367 151 RVAKAILESF----RDVVS--AV-----AAFDTLLRHIEKSV---KGKKFLLVLDDVWSGN--PTKWEELVS---TL-KF 210 (826)
Q Consensus 151 ~~~~~i~~~l----~~~~~--~~-----~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~--~~~~~~l~~---~~-~~ 210 (826)
.+++.++..+ +.... .. .........+.+.+ .+++.+|++|+|..-- ..-.+++.. .+ ..
T Consensus 80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~ 159 (331)
T PF14516_consen 80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQ 159 (331)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHh
Confidence 5555555444 33221 11 11123334444432 2689999999994311 111122222 21 11
Q ss_pred CC----CCcEEEEecccHH--HHhh-----ccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCC
Q 003367 211 GS----PESRILVTTRKED--VAKM-----MRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNG 279 (826)
Q Consensus 211 ~~----~~s~iivTtR~~~--v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g 279 (826)
.. ...-.+|...... .... ......++|++|+.+|...|..++-.. .. .+..++|...+||
T Consensus 160 ~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~----~~----~~~~~~l~~~tgG 231 (331)
T PF14516_consen 160 RKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE----FS----QEQLEQLMDWTGG 231 (331)
T ss_pred cccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc----CC----HHHHHHHHHHHCC
Confidence 11 1111122222111 1111 223457899999999999999876422 11 2237889999999
Q ss_pred CchhHHHHhhhhcCC
Q 003367 280 LPLAAKTSGSLLSLK 294 (826)
Q Consensus 280 lPLal~~~~~~l~~~ 294 (826)
+|.-+..++..+...
T Consensus 232 hP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 232 HPYLVQKACYLLVEE 246 (331)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999988653
No 133
>CHL00181 cbbX CbbX; Provisional
Probab=98.09 E-value=0.00011 Score=75.53 Aligned_cols=162 Identities=12% Similarity=0.112 Sum_probs=85.6
Q ss_pred ccccchHHHHHHHHHHc---CC-----CC-CCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCH
Q 003367 79 KVRGRDEEKKTIIDLLL---GS-----SS-QEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDE 149 (826)
Q Consensus 79 ~~vGr~~~~~~l~~~L~---~~-----~~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 149 (826)
.++|.+..+++|.++.. -. .. ........+.++|.+|+||||+|+.+++.....+.-...-|+.++.
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~---- 99 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR---- 99 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----
Confidence 47787777665544421 10 00 0111233578999999999999999987432111111112344331
Q ss_pred HHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCC---------ChhhHHHHHhhhcCCCCCcEEEEe
Q 003367 150 IRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSG---------NPTKWEELVSTLKFGSPESRILVT 220 (826)
Q Consensus 150 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---------~~~~~~~l~~~~~~~~~~s~iivT 220 (826)
.. +...+.+... ......+.+. ..-+|++|++..- ..+..+.+...+.....+.+||++
T Consensus 100 ~~----l~~~~~g~~~-----~~~~~~l~~a---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~a 167 (287)
T CHL00181 100 DD----LVGQYIGHTA-----PKTKEVLKKA---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFA 167 (287)
T ss_pred HH----HHHHHhccch-----HHHHHHHHHc---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 12 2222211110 1112222222 2349999999531 122334455555555556677777
Q ss_pred cccHHHHhhc--------cccceEEccCCCCchhHHHHHHhhhc
Q 003367 221 TRKEDVAKMM--------RTTSMILLAKLPDNDCWSLFSQIAFS 256 (826)
Q Consensus 221 tR~~~v~~~~--------~~~~~~~l~~L~~~~~~~lf~~~a~~ 256 (826)
+....+.... .....+.+++++.+|..+++...+-.
T Consensus 168 g~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 168 GYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred CCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 7644432111 12457899999999999998887644
No 134
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.09 E-value=1.8e-05 Score=85.55 Aligned_cols=179 Identities=14% Similarity=0.155 Sum_probs=97.1
Q ss_pred CccccchHHHHHHHHHHcCCCC-------CCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSS-------QEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEI 150 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 150 (826)
.++.|+++.++++.+.+..+-. -+-..++-|.++|++|+|||++|+++++.. ... |+.++. .
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~--~~~-----~i~v~~----~ 199 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET--NAT-----FIRVVG----S 199 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh--CCC-----EEEeeh----H
Confidence 3578999999999887643211 011345679999999999999999999843 222 222211 1
Q ss_pred HHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCC-----------ChhhHHHHHhhh---cC--CCCC
Q 003367 151 RVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSG-----------NPTKWEELVSTL---KF--GSPE 214 (826)
Q Consensus 151 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~l~~~~---~~--~~~~ 214 (826)
. +.....+.. ...+...+...-...+.+|+|||+..- +......+...+ .. ...+
T Consensus 200 ~----l~~~~~g~~-----~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~ 270 (389)
T PRK03992 200 E----LVQKFIGEG-----ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGN 270 (389)
T ss_pred H----HhHhhccch-----HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCC
Confidence 1 111111100 011111222222356789999999431 111112232222 21 1235
Q ss_pred cEEEEecccHHHHhh--c---cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCc
Q 003367 215 SRILVTTRKEDVAKM--M---RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLP 281 (826)
Q Consensus 215 s~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glP 281 (826)
..||.||........ . .....++++..+.++..++|+.++.+.... ....+ ..+++.+.|.-
T Consensus 271 v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~~----~~la~~t~g~s 337 (389)
T PRK03992 271 VKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVDL----EELAELTEGAS 337 (389)
T ss_pred EEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCCH----HHHHHHcCCCC
Confidence 577777775432221 1 224578999999999999998876433221 11222 44666666643
No 135
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.09 E-value=7.9e-07 Score=97.70 Aligned_cols=105 Identities=34% Similarity=0.425 Sum_probs=62.6
Q ss_pred cCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhccc
Q 003367 460 RLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLI 539 (826)
Q Consensus 460 ~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~ 539 (826)
.+..++.++++ .+ .+..+-..+..+.+|.+|++.+|. +..+...+..+++|++|++++|. ++.+ ..+..++
T Consensus 70 ~l~~l~~l~l~-----~n-~i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~-I~~i-~~l~~l~ 140 (414)
T KOG0531|consen 70 SLTSLKELNLR-----QN-LIAKILNHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNK-ITKL-EGLSTLT 140 (414)
T ss_pred HhHhHHhhccc-----hh-hhhhhhcccccccceeeeeccccc-hhhcccchhhhhcchheeccccc-cccc-cchhhcc
Confidence 34444555555 22 333323345667777777777776 55554446667777777777776 3333 2466666
Q ss_pred CCCeeeecCcccccCCccCCCCCCCCcCCceeeCc
Q 003367 540 NLRHLINEGTPLLYLPKGLERLTCLRTLSEFTVSD 574 (826)
Q Consensus 540 ~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~ 574 (826)
.|+.|++++|.+..++ ++..+++|+.+++.++..
T Consensus 141 ~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~i 174 (414)
T KOG0531|consen 141 LLKELNLSGNLISDIS-GLESLKSLKLLDLSYNRI 174 (414)
T ss_pred chhhheeccCcchhcc-CCccchhhhcccCCcchh
Confidence 6777777777776553 345566666666666544
No 136
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.08 E-value=7.6e-05 Score=76.32 Aligned_cols=162 Identities=15% Similarity=0.145 Sum_probs=82.9
Q ss_pred ccccchHHHHHHHHHHcC---------CCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCH
Q 003367 79 KVRGRDEEKKTIIDLLLG---------SSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDE 149 (826)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~---------~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 149 (826)
.++|.+..+++|.+.... ..-...+....+.++|++|+||||+|+.+++.......-....++.+..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 478988877766543211 1001123455688999999999999999987431111111111222221
Q ss_pred HHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCC--------hhhHHHHHhhhcCCCCCcEEEEec
Q 003367 150 IRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGN--------PTKWEELVSTLKFGSPESRILVTT 221 (826)
Q Consensus 150 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~~~~~~l~~~~~~~~~~s~iivTt 221 (826)
.++... .++.. .....+.+.+. ..-+|++|+++.-. .+..+.+...+........+|+++
T Consensus 83 ~~l~~~---~~g~~------~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 83 ADLVGE---YIGHT------AQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred HHhhhh---hccch------HHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 111111 01110 11112222221 23489999995411 223444555554444444566665
Q ss_pred ccHHHHh------hc--cccceEEccCCCCchhHHHHHHhhhc
Q 003367 222 RKEDVAK------MM--RTTSMILLAKLPDNDCWSLFSQIAFS 256 (826)
Q Consensus 222 R~~~v~~------~~--~~~~~~~l~~L~~~~~~~lf~~~a~~ 256 (826)
....... .+ .....+.+++++.++..+++.+.+..
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 5433211 11 11346788999999999998877643
No 137
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.05 E-value=0.00015 Score=79.52 Aligned_cols=161 Identities=15% Similarity=0.159 Sum_probs=92.0
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCC
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGK 184 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 184 (826)
...+.|+|..|+|||+||+++++....+..-..++|+++ .++...+...+... ..+. +.+.+++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~----~~~~~~~- 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KMEE----FKEKYRS- 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHHH----HHHHHHh-
Confidence 456899999999999999999985432211123556543 33444444444321 1122 2222222
Q ss_pred ceeEEeccCCCCChh-hH-HHHHhhhcC-CCCCcEEEEeccc-HHH--------HhhccccceEEccCCCCchhHHHHHH
Q 003367 185 KFLLVLDDVWSGNPT-KW-EELVSTLKF-GSPESRILVTTRK-EDV--------AKMMRTTSMILLAKLPDNDCWSLFSQ 252 (826)
Q Consensus 185 ~~LlVlDdv~~~~~~-~~-~~l~~~~~~-~~~~s~iivTtR~-~~v--------~~~~~~~~~~~l~~L~~~~~~~lf~~ 252 (826)
.-+|||||++..... .+ +.+...+.. ...+..+|+|+.. +.. ...+.....+++.+.+.++-.+++.+
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHH
Confidence 348999999542211 11 223333322 1234567777764 221 11222234688999999999999988
Q ss_pred hhhcCCCcccchhhHHHHHHHHHhcCCCchhHH
Q 003367 253 IAFSGRTTEECQKLTDIGRMIADKCNGLPLAAK 285 (826)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~ 285 (826)
.+.......+ +++.+.|++.+.|..-.+.
T Consensus 280 ~~~~~~~~l~----~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 280 KAEEEGLELP----DEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHcCCCCC----HHHHHHHHHhcCCCHHHHH
Confidence 8754332222 5677788888888766443
No 138
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.03 E-value=0.00011 Score=80.66 Aligned_cols=160 Identities=14% Similarity=0.161 Sum_probs=93.4
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCC-C-cEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHF-D-KRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVK 182 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 182 (826)
..-+.|+|..|+|||+||+++++... ..+ . .++|++. .++...+...+... ..+. +.+...
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~--~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~~----f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVV--QNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLNE----FREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH--HhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHHH----HHHHHH
Confidence 44599999999999999999999542 322 2 3556653 34555555554321 1112 222233
Q ss_pred CCceeEEeccCCCC-ChhhH-HHHHhhhcC-CCCCcEEEEecc-cHHHH--------hhccccceEEccCCCCchhHHHH
Q 003367 183 GKKFLLVLDDVWSG-NPTKW-EELVSTLKF-GSPESRILVTTR-KEDVA--------KMMRTTSMILLAKLPDNDCWSLF 250 (826)
Q Consensus 183 ~k~~LlVlDdv~~~-~~~~~-~~l~~~~~~-~~~~s~iivTtR-~~~v~--------~~~~~~~~~~l~~L~~~~~~~lf 250 (826)
.+.-+||+||++.. +...+ +.+...+.. ...|..||+||. .+.-. ..+...-.+++++.+.++-.+++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 34568999999532 11111 223333221 123446888874 33211 12233457889999999999999
Q ss_pred HHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHH
Q 003367 251 SQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAK 285 (826)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~ 285 (826)
.+.+......-+ .++...|++.+.|.--.+.
T Consensus 273 ~~~~~~~~~~l~----~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 273 RKMLEIEHGELP----EEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHhcCCCCC----HHHHHHHHhccccCHHHHH
Confidence 888754322222 5677888888887654433
No 139
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.02 E-value=5.2e-05 Score=89.77 Aligned_cols=182 Identities=17% Similarity=0.186 Sum_probs=95.1
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhccccccc----CCCcEEE-EEeCCCCCHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDA----HFDKRIW-VCFSDPVDEIRV 152 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~w-v~~~~~~~~~~~ 152 (826)
..++||+.++.++++.|.... ..-+.++|.+|+||||+|+.+++...... -.+..+| +.++.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~------- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL------- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh-------
Confidence 468999999999999886542 23467999999999999999998532111 1122232 22221
Q ss_pred HHHHHHHhcccchhhhhH-HHHHHHHHHHh-cCCceeEEeccCCCCC-------hhhHHH-HHhhhcCCCCCcEEEEecc
Q 003367 153 AKAILESFRDVVSAVAAF-DTLLRHIEKSV-KGKKFLLVLDDVWSGN-------PTKWEE-LVSTLKFGSPESRILVTTR 222 (826)
Q Consensus 153 ~~~i~~~l~~~~~~~~~~-~~~~~~l~~~l-~~k~~LlVlDdv~~~~-------~~~~~~-l~~~~~~~~~~s~iivTtR 222 (826)
+. .+. ....+. +.+...+.+.- .+++.+|++|+++.-. ..+... +...+.. ..-++|-||.
T Consensus 254 ---l~---ag~-~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~IgaTT 324 (852)
T TIGR03345 254 ---LQ---AGA-SVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAATT 324 (852)
T ss_pred ---hh---ccc-ccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEecC
Confidence 00 000 001111 12222222221 2578999999995421 111111 2222221 2346666666
Q ss_pred cHHHHhh-------ccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCc
Q 003367 223 KEDVAKM-------MRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLP 281 (826)
Q Consensus 223 ~~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glP 281 (826)
..+.... ...-..+.+++++.++..+++....-.-.......-..+....+++.+.+..
T Consensus 325 ~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 325 WAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred HHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 5432111 1123589999999999999975443111100000111344555666665443
No 140
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.02 E-value=0.00017 Score=78.97 Aligned_cols=155 Identities=14% Similarity=0.127 Sum_probs=87.9
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCC
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGK 184 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 184 (826)
..-+.|+|..|+|||+||+++++... .....+++++. ..+...+...+... . .+.+++.. ..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~--~~~~~v~yi~~------~~f~~~~~~~l~~~-----~----~~~f~~~~-~~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR--ESGGKILYVRS------ELFTEHLVSAIRSG-----E----MQRFRQFY-RN 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH--HcCCCEEEeeH------HHHHHHHHHHHhcc-----h----HHHHHHHc-cc
Confidence 45689999999999999999998543 22234555542 33444444444321 1 11233333 24
Q ss_pred ceeEEeccCCCCChhh--HHHHHhhhcC-CCCCcEEEEeccc-HH--------HHhhccccceEEccCCCCchhHHHHHH
Q 003367 185 KFLLVLDDVWSGNPTK--WEELVSTLKF-GSPESRILVTTRK-ED--------VAKMMRTTSMILLAKLPDNDCWSLFSQ 252 (826)
Q Consensus 185 ~~LlVlDdv~~~~~~~--~~~l~~~~~~-~~~~s~iivTtR~-~~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~ 252 (826)
.-++++||+....... .+.+...+.. ...|..||+||.. +. +...+.....+++.+++.++..+++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 4588899995432211 1233333221 1234578888754 22 122233346888999999999999988
Q ss_pred hhhcCCCcccchhhHHHHHHHHHhcCCCc
Q 003367 253 IAFSGRTTEECQKLTDIGRMIADKCNGLP 281 (826)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~i~~~~~glP 281 (826)
.+-......+ .++..-|++.+.|.-
T Consensus 283 k~~~~~~~l~----~evl~~la~~~~~di 307 (445)
T PRK12422 283 KAEALSIRIE----ETALDFLIEALSSNV 307 (445)
T ss_pred HHHHcCCCCC----HHHHHHHHHhcCCCH
Confidence 7754332222 455565666666543
No 141
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.02 E-value=0.00018 Score=74.21 Aligned_cols=133 Identities=12% Similarity=0.148 Sum_probs=73.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCce
Q 003367 107 IISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKF 186 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~ 186 (826)
-|.++|++|+||||+|+.++.............++.++. . ++...+.+... ......+.+. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~----~l~~~~~g~~~-----~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----D----DLVGQYIGHTA-----PKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----H----HHhHhhcccch-----HHHHHHHHHc---cCc
Confidence 588999999999999988876332111111112444332 1 12222222111 1122223322 235
Q ss_pred eEEeccCCCC---------ChhhHHHHHhhhcCCCCCcEEEEecccHHHHhhc--------cccceEEccCCCCchhHHH
Q 003367 187 LLVLDDVWSG---------NPTKWEELVSTLKFGSPESRILVTTRKEDVAKMM--------RTTSMILLAKLPDNDCWSL 249 (826)
Q Consensus 187 LlVlDdv~~~---------~~~~~~~l~~~~~~~~~~s~iivTtR~~~v~~~~--------~~~~~~~l~~L~~~~~~~l 249 (826)
+|+||++..- ..+.++.+...+.....+.+||+++......... .....+++++++.+|-.++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8999999421 1223445566665555566777776543322111 1135689999999999999
Q ss_pred HHHhhh
Q 003367 250 FSQIAF 255 (826)
Q Consensus 250 f~~~a~ 255 (826)
+...+-
T Consensus 204 ~~~~l~ 209 (284)
T TIGR02880 204 AGLMLK 209 (284)
T ss_pred HHHHHH
Confidence 888754
No 142
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.02 E-value=0.00013 Score=80.96 Aligned_cols=160 Identities=14% Similarity=0.154 Sum_probs=93.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCC--CcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHh
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHF--DKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSV 181 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 181 (826)
...-+.|+|..|+|||+||+++++... ..+ ..++|++.. ++...+...+... ..+ .+.+.+
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~~~--~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~----~~~~~~ 209 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNYIL--EKNPNAKVVYVTSE------KFTNDFVNALRNN-----TME----EFKEKY 209 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH--HhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cHH----HHHHHH
Confidence 345689999999999999999999543 333 234555432 3334444443211 112 222333
Q ss_pred cCCceeEEeccCCCCCh-h-hHHHHHhhhcC-CCCCcEEEEecccHH---------HHhhccccceEEccCCCCchhHHH
Q 003367 182 KGKKFLLVLDDVWSGNP-T-KWEELVSTLKF-GSPESRILVTTRKED---------VAKMMRTTSMILLAKLPDNDCWSL 249 (826)
Q Consensus 182 ~~k~~LlVlDdv~~~~~-~-~~~~l~~~~~~-~~~~s~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~l 249 (826)
+ +.-+|||||++.... . ..+.+...+.. ...|..||+|+.... +...+.....+++++.+.++-.++
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 3 344899999954221 1 12233333321 123445777776431 122233345789999999999999
Q ss_pred HHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHH
Q 003367 250 FSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAK 285 (826)
Q Consensus 250 f~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~ 285 (826)
+.+.+......-+ .++.+.|++.+.|..-.+.
T Consensus 289 l~~~~~~~~~~l~----~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 289 LKKKAEEEGIDLP----DEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHHcCCCCC----HHHHHHHHcCcCCCHHHHH
Confidence 9988754322122 5678889999998776443
No 143
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.01 E-value=0.00019 Score=74.74 Aligned_cols=198 Identities=14% Similarity=0.150 Sum_probs=114.2
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccc-------------cCCCcEEEEEeC
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVD-------------AHFDKRIWVCFS 144 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-------------~~f~~~~wv~~~ 144 (826)
.+++|.+..++.+...+.... -.....++|+.|+||+++|.++++..-.. ..+.-..|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 468999999999999986542 34688999999999999999987743211 111223344211
Q ss_pred CCCCHHHHHHHHHHHhc--ccchhh---hhHHHHHHHHHHH-hcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEE
Q 003367 145 DPVDEIRVAKAILESFR--DVVSAV---AAFDTLLRHIEKS-VKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRIL 218 (826)
Q Consensus 145 ~~~~~~~~~~~i~~~l~--~~~~~~---~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~ii 218 (826)
...+...+-..-++..+ ...... ..+.++.+.+... ..+++-++|+|++...+......++..+.......-|+
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fIL 158 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLIL 158 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEE
Confidence 00000000011111111 011111 1222222222211 23567799999997666677788888887655333344
Q ss_pred EecccHHHHhhcc-ccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHH
Q 003367 219 VTTRKEDVAKMMR-TTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTS 287 (826)
Q Consensus 219 vTtR~~~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 287 (826)
+|++...+...+. ....+.+.++++++..+.+.+....... ......++..++|.|..+..+
T Consensus 159 i~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~-------~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 159 IAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL-------NINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc-------hhHHHHHHHHcCCCHHHHHHH
Confidence 4544444444332 3568999999999999999876421110 111357889999999765443
No 144
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.00 E-value=1.1e-06 Score=96.69 Aligned_cols=108 Identities=25% Similarity=0.277 Sum_probs=85.1
Q ss_pred hhccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhh
Q 003367 457 LFDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIA 536 (826)
Q Consensus 457 ~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~ 536 (826)
.+..+++|..|++.+| .+..+...+..+++|++|+|++|. ++.+.. +..+..|+.|++++|. +..+ ..+.
T Consensus 90 ~l~~~~~l~~l~l~~n------~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L~l~~N~-i~~~-~~~~ 159 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDN------KIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKELNLSGNL-ISDI-SGLE 159 (414)
T ss_pred ccccccceeeeecccc------chhhcccchhhhhcchheeccccc-cccccc-hhhccchhhheeccCc-chhc-cCCc
Confidence 3678899999999844 455554447889999999999998 777764 8888999999999998 4444 3567
Q ss_pred cccCCCeeeecCcccccCCcc-CCCCCCCCcCCceeeCc
Q 003367 537 KLINLRHLINEGTPLLYLPKG-LERLTCLRTLSEFTVSD 574 (826)
Q Consensus 537 ~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~ 574 (826)
.+++|+.+++++|.+..+... ...+.+|+.+.+..+..
T Consensus 160 ~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 160 SLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSI 198 (414)
T ss_pred cchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCch
Confidence 799999999999999877654 46777888887766544
No 145
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.00 E-value=8e-05 Score=87.59 Aligned_cols=156 Identities=17% Similarity=0.204 Sum_probs=84.7
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccc---cCC-CcEEEEEeCCCCCHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVD---AHF-DKRIWVCFSDPVDEIRVA 153 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~f-~~~~wv~~~~~~~~~~~~ 153 (826)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.+++..... ..+ +..+|. + +...
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~-- 248 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGS-- 248 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHH--
Confidence 369999999999999886542 2346799999999999999999854211 111 233332 1 1111
Q ss_pred HHHHHHhcccchhhhhHHHHH-HHHHHHhcCCceeEEeccCCCCC---------hhhHHHHHhhhcCCCCCcEEEEeccc
Q 003367 154 KAILESFRDVVSAVAAFDTLL-RHIEKSVKGKKFLLVLDDVWSGN---------PTKWEELVSTLKFGSPESRILVTTRK 223 (826)
Q Consensus 154 ~~i~~~l~~~~~~~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~~~---------~~~~~~l~~~~~~~~~~s~iivTtR~ 223 (826)
+.... ....+.++.. +.+.+.-..++.+|++|+++.-. .+.-+.+...+.. ..-++|-+|..
T Consensus 249 --l~a~~----~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~IgaTt~ 320 (731)
T TIGR02639 249 --LLAGT----KYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRCIGSTTY 320 (731)
T ss_pred --Hhhhc----cccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEEEEecCH
Confidence 11100 0001122222 22222223468899999995211 1112223333322 12355555554
Q ss_pred HHHHhh-------ccccceEEccCCCCchhHHHHHHhh
Q 003367 224 EDVAKM-------MRTTSMILLAKLPDNDCWSLFSQIA 254 (826)
Q Consensus 224 ~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~a 254 (826)
.+.... ...-..+++..++.++..+++....
T Consensus 321 ~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 321 EEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 322111 1113478999999999999998654
No 146
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.99 E-value=4.3e-05 Score=77.64 Aligned_cols=167 Identities=14% Similarity=0.216 Sum_probs=103.4
Q ss_pred CCccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHH
Q 003367 77 VSKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAI 156 (826)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 156 (826)
.+.|.+|+.+++.+..++...+. .-+.+|.|+|-+|.|||.+.+++.+... ...+|+++-+.++..-++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHH
Confidence 46788999999999999876542 3456679999999999999999998542 235799999999999999999
Q ss_pred HHHhcc--cchhh-----hhHHHHHHHHHHH--h--cCCceeEEeccCCCCChhhHHHH-----HhhhcCCCCCcEEEEe
Q 003367 157 LESFRD--VVSAV-----AAFDTLLRHIEKS--V--KGKKFLLVLDDVWSGNPTKWEEL-----VSTLKFGSPESRILVT 220 (826)
Q Consensus 157 ~~~l~~--~~~~~-----~~~~~~~~~l~~~--l--~~k~~LlVlDdv~~~~~~~~~~l-----~~~~~~~~~~s~iivT 220 (826)
+.+... ..+.. ....+.+..+.++ . +++.++||||++ +...+.+.+ .....-.....-+|++
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDna--d~lrD~~a~ll~~l~~L~el~~~~~i~iil 154 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNA--DALRDMDAILLQCLFRLYELLNEPTIVIIL 154 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCH--HhhhccchHHHHHHHHHHHHhCCCceEEEE
Confidence 999852 21111 2222333344431 2 246899999999 332222221 1111111122334444
Q ss_pred cccHH--H-Hhhcccc--ceEEccCCCCchhHHHHHHh
Q 003367 221 TRKED--V-AKMMRTT--SMILLAKLPDNDCWSLFSQI 253 (826)
Q Consensus 221 tR~~~--v-~~~~~~~--~~~~l~~L~~~~~~~lf~~~ 253 (826)
+-... . ...++.. .++....-+.+|..+++.+.
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 43221 1 1112332 24556667778888877653
No 147
>PRK10536 hypothetical protein; Provisional
Probab=97.95 E-value=0.0003 Score=69.42 Aligned_cols=136 Identities=15% Similarity=0.204 Sum_probs=75.6
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEe----CC-----CCC
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCF----SD-----PVD 148 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~----~~-----~~~ 148 (826)
..+.+|......+..++... .+|.+.|.+|.|||+||.+++.+.-..+.|+.++.+.- .+ +-+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~--------~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK--------QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC--------CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 45778999999999988542 38999999999999999999885322344554332210 00 112
Q ss_pred HHHHHHHHHHHhcccchhhhhHHHHHHHH-----------HHHhcCCce---eEEeccCCCCChhhHHHHHhhhcCCCCC
Q 003367 149 EIRVAKAILESFRDVVSAVAAFDTLLRHI-----------EKSVKGKKF---LLVLDDVWSGNPTKWEELVSTLKFGSPE 214 (826)
Q Consensus 149 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l-----------~~~l~~k~~---LlVlDdv~~~~~~~~~~l~~~~~~~~~~ 214 (826)
..+-..-.+.-+..........+.....+ -.++++..+ +||+|++.+-+..+...+. ...+.+
T Consensus 127 ~~eK~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~l---tR~g~~ 203 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFL---TRLGEN 203 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHH---hhcCCC
Confidence 22111111111111000000001111111 124456544 9999999776665444444 445689
Q ss_pred cEEEEecccH
Q 003367 215 SRILVTTRKE 224 (826)
Q Consensus 215 s~iivTtR~~ 224 (826)
|++|+|--..
T Consensus 204 sk~v~~GD~~ 213 (262)
T PRK10536 204 VTVIVNGDIT 213 (262)
T ss_pred CEEEEeCChh
Confidence 9999987644
No 148
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.95 E-value=0.00026 Score=68.88 Aligned_cols=126 Identities=21% Similarity=0.339 Sum_probs=72.3
Q ss_pred cccCCccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHH
Q 003367 74 VIDVSKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVA 153 (826)
Q Consensus 74 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 153 (826)
.+....++|.|++++.|++-...=-. .....-|.+||..|.|||++++++.+....++ =.. |-+..
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--G~pannvLL~G~rGtGKSSlVkall~~y~~~G--LRl--Iev~k-------- 88 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQ--GLPANNVLLWGARGTGKSSLVKALLNEYADQG--LRL--IEVSK-------- 88 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHc--CCCCcceEEecCCCCCHHHHHHHHHHHHhhcC--ceE--EEECH--------
Confidence 34456799999999888764321100 11334688999999999999999998432222 112 22221
Q ss_pred HHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCC-CChhhHHHHHhhhcCC---CCCc-EEEEecccHHH
Q 003367 154 KAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWS-GNPTKWEELVSTLKFG---SPES-RILVTTRKEDV 226 (826)
Q Consensus 154 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~~~~~---~~~s-~iivTtR~~~v 226 (826)
....++..+.+.++. ...||+|.+||+-= .....+..++..+..+ .+.. .|..||..+.+
T Consensus 89 -----------~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 89 -----------EDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred -----------HHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 122233444444442 46899999999832 2334556666665432 2333 44455554443
No 149
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.95 E-value=0.00027 Score=78.70 Aligned_cols=159 Identities=13% Similarity=0.115 Sum_probs=92.0
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCc
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKK 185 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 185 (826)
..+.|+|..|+|||.|++++++.......-..++|++. .++..++...+... . ...+++.+.. -
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~~-----~----~~~f~~~y~~-~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRDG-----K----GDSFRRRYRE-M 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc-----c----HHHHHHHhhc-C
Confidence 45899999999999999999995321111123456543 33444444333211 1 1122233322 3
Q ss_pred eeEEeccCCCCCh-hhHH-HHHhhhcC-CCCCcEEEEecccH---------HHHhhccccceEEccCCCCchhHHHHHHh
Q 003367 186 FLLVLDDVWSGNP-TKWE-ELVSTLKF-GSPESRILVTTRKE---------DVAKMMRTTSMILLAKLPDNDCWSLFSQI 253 (826)
Q Consensus 186 ~LlVlDdv~~~~~-~~~~-~l~~~~~~-~~~~s~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 253 (826)
=+|||||+..... ..|+ .+...+.. ...|..|||||+.. .+...+...-++++...+.+.-.+++.++
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 4889999954322 2232 23333332 12355688888752 12233444668899999999999999988
Q ss_pred hhcCCCcccchhhHHHHHHHHHhcCCCchhH
Q 003367 254 AFSGRTTEECQKLTDIGRMIADKCNGLPLAA 284 (826)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~i~~~~~glPLal 284 (826)
+....-... .++++-|++.+.+..-.|
T Consensus 459 a~~r~l~l~----~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 459 AVQEQLNAP----PEVLEFIASRISRNIREL 485 (617)
T ss_pred HHhcCCCCC----HHHHHHHHHhccCCHHHH
Confidence 754333222 566777777776654433
No 150
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.92 E-value=0.00086 Score=65.00 Aligned_cols=181 Identities=18% Similarity=0.258 Sum_probs=108.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEe-CCCCCHHHHHHHHHHHhcccchh--hhhHHHHHHHHHHH
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCF-SDPVDEIRVAKAILESFRDVVSA--VAAFDTLLRHIEKS 180 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~ 180 (826)
+-.++.++|.-|.|||.+++++..... + +.++-|.+ .+..+...+...|+..+...... ..-.++..+.+...
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~--~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al 125 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLN--E--DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAAL 125 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcC--C--CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHH
Confidence 345899999999999999995554221 1 22222333 33456777888888888762211 11223333344443
Q ss_pred h-cCCc-eeEEeccCCCCChhhHHHHHhhhcCCCCCc---EEEEecccH--------HHHhhccccce-EEccCCCCchh
Q 003367 181 V-KGKK-FLLVLDDVWSGNPTKWEELVSTLKFGSPES---RILVTTRKE--------DVAKMMRTTSM-ILLAKLPDNDC 246 (826)
Q Consensus 181 l-~~k~-~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s---~iivTtR~~--------~v~~~~~~~~~-~~l~~L~~~~~ 246 (826)
. +++| ..+++|+.........+.+.....-...++ +|+..-..+ .....-..... |++.|++.++.
T Consensus 126 ~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t 205 (269)
T COG3267 126 VKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAET 205 (269)
T ss_pred HHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHH
Confidence 3 5677 999999997766667777665543322222 233322211 11111111233 89999999999
Q ss_pred HHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHHhh
Q 003367 247 WSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTSGS 289 (826)
Q Consensus 247 ~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~ 289 (826)
..++..+..+...+.+- --.+....|.....|.|.++..++.
T Consensus 206 ~~yl~~~Le~a~~~~~l-~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 206 GLYLRHRLEGAGLPEPL-FSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHhccCCCccc-CChhHHHHHHHHhccchHHHHHHHH
Confidence 99888876554332221 2245667799999999999987764
No 151
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.92 E-value=2.1e-06 Score=82.48 Aligned_cols=258 Identities=20% Similarity=0.152 Sum_probs=140.3
Q ss_pred hccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCcc----ccc-------hhhcCCCCCcEEeccCCC
Q 003367 458 FDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIY----ELP-------EALCDLCNLQTLDVSNCG 526 (826)
Q Consensus 458 ~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~----~lp-------~~i~~L~~L~~L~L~~~~ 526 (826)
+..+..+..++||+|.++.- ....+...|.+-.+|+..+++.-- ++ ++| +.+-++++|++.+||.|.
T Consensus 26 l~~~d~~~evdLSGNtigtE-A~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTE-AMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHhhcceeEEeccCCcccHH-HHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 34577788888886665322 344455666677778888877642 22 233 235677888888888887
Q ss_pred CCcccchh----hhcccCCCeeeecCcccccCCcc-CCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcc
Q 003367 527 NLHALPQG----IAKLINLRHLINEGTPLLYLPKG-LERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTA 601 (826)
Q Consensus 527 ~~~~lp~~----i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~ 601 (826)
+....|.. |.+-+.|.||.+++|.+..+..+ |+ +.|++|- .+
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig--kal~~la--~n----------------------------- 150 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG--KALFHLA--YN----------------------------- 150 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHH--HHHHHHH--HH-----------------------------
Confidence 66555543 44557788888887766533211 21 1122221 00
Q ss_pred cCCCCChhhhhhhhccCCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCc--------cc
Q 003367 602 LGNVTDVGEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSW--------LM 673 (826)
Q Consensus 602 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~--------l~ 673 (826)
....+.+.|+......|.+.... .......+....+|+.+.+..|.+. |.. +.
T Consensus 151 ------------KKaa~kp~Le~vicgrNRlengs----~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~ 211 (388)
T COG5238 151 ------------KKAADKPKLEVVICGRNRLENGS----KELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLF 211 (388)
T ss_pred ------------hhhccCCCceEEEeccchhccCc----HHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHH
Confidence 01112223333332222221111 1112223344467888888887765 443 23
Q ss_pred CccCCcEEEEecCCCCCC----CC-CCCCCCccceeeccccccceEeCc-ccccCCCCccccCccCcCCCccceeecccc
Q 003367 674 SLTELRMLNLQRCGKCEQ----LP-SLGRLPSLESLVVEALSSVRRVGN-EFLGIESDDISLSSSSVVFPKLKFLEFRDM 747 (826)
Q Consensus 674 ~l~~L~~L~L~~~~~~~~----l~-~l~~l~~L~~L~L~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 747 (826)
.+++|+.|+|.+|.++.. +. .++..+.|+.|.+..|- ++.-+. .+.... ....+|+|..|.+.++
T Consensus 212 y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl-ls~~G~~~v~~~f--------~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 212 YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL-LSNEGVKSVLRRF--------NEKFVPNLMPLPGDYN 282 (388)
T ss_pred HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh-hccccHHHHHHHh--------hhhcCCCccccccchh
Confidence 578889999998887642 11 45666778899888775 211111 111000 0235789999998887
Q ss_pred ccccccccc-cccccCcCCCCccceeeecCCC
Q 003367 748 DEWEEWDYV-ISGQKDIKIMPRLHRLKLDGCH 778 (826)
Q Consensus 748 ~~l~~~~~~-~~~~~~~~~l~~L~~L~l~~c~ 778 (826)
..-...... +-....-.++|-|..|.+.+|.
T Consensus 283 e~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 283 ERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred hhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 432221110 0011122478889999888854
No 152
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.90 E-value=9.7e-05 Score=87.99 Aligned_cols=155 Identities=17% Similarity=0.216 Sum_probs=84.4
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccc---cCC-CcEEEEEeCCCCCHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVD---AHF-DKRIWVCFSDPVDEIRVA 153 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~f-~~~~wv~~~~~~~~~~~~ 153 (826)
..++||+++++++.+.|.... ..-+.++|++|+|||++|+.++...... ... +..+|. + +...+
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l- 246 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLL- 246 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHH-
Confidence 458999999999999996542 2346799999999999999999853211 111 234442 1 11111
Q ss_pred HHHHHHhcccchhhhhHHH-HHHHHHHHhcCCceeEEeccCCCC-------ChhhHHHHHhhhcCCCCCcEEEEecccHH
Q 003367 154 KAILESFRDVVSAVAAFDT-LLRHIEKSVKGKKFLLVLDDVWSG-------NPTKWEELVSTLKFGSPESRILVTTRKED 225 (826)
Q Consensus 154 ~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~k~~LlVlDdv~~~-------~~~~~~~l~~~~~~~~~~s~iivTtR~~~ 225 (826)
+.+.. ...+.++ +...+.+.-..++.+|++|+++.- .......++...... ..-++|.+|....
T Consensus 247 ------~ag~~-~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g~l~~IgaTt~~e 318 (821)
T CHL00095 247 ------LAGTK-YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-GELQCIGATTLDE 318 (821)
T ss_pred ------hccCC-CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-CCcEEEEeCCHHH
Confidence 11110 0112222 222333333457899999999420 001122222222121 2245666666554
Q ss_pred HHhh-------ccccceEEccCCCCchhHHHHHH
Q 003367 226 VAKM-------MRTTSMILLAKLPDNDCWSLFSQ 252 (826)
Q Consensus 226 v~~~-------~~~~~~~~l~~L~~~~~~~lf~~ 252 (826)
.... ......+.+...+.++...++..
T Consensus 319 y~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 319 YRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 3221 11234678888888888887764
No 153
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.85 E-value=0.00041 Score=72.71 Aligned_cols=161 Identities=12% Similarity=0.116 Sum_probs=96.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCC-------------------CcEEEEEeCCCCCHHHHHHHHHHHhcccc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHF-------------------DKRIWVCFSDPVDEIRVAKAILESFRDVV 164 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-------------------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 164 (826)
-...+.++|+.|+||||+|+.++...-..... .-..|+.-.... ..
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~---------------~~ 85 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEAD---------------KT 85 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCC---------------CC
Confidence 34568899999999999999998754321110 011222110000 00
Q ss_pred hhhhhHHHHHHHHHHH-hcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccHH-HHhhc-cccceEEccCC
Q 003367 165 SAVAAFDTLLRHIEKS-VKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKED-VAKMM-RTTSMILLAKL 241 (826)
Q Consensus 165 ~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~~-v~~~~-~~~~~~~l~~L 241 (826)
-..+.+.++.+.+... ..+++-++|+|++..-+......++..+.....++.+|+||.+.. +.... .-...+.+.++
T Consensus 86 i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~ 165 (328)
T PRK05707 86 IKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLP 165 (328)
T ss_pred CCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCc
Confidence 0112222222222221 124455667899987777888888888877666777777777653 33222 22567899999
Q ss_pred CCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHH
Q 003367 242 PDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTS 287 (826)
Q Consensus 242 ~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 287 (826)
+.+++.+.+..... ... .+.+..++..++|.|+....+
T Consensus 166 ~~~~~~~~L~~~~~-~~~-------~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 166 SNEESLQWLQQALP-ESD-------ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred CHHHHHHHHHHhcc-cCC-------hHHHHHHHHHcCCCHHHHHHH
Confidence 99999988876531 111 233556789999999765544
No 154
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.84 E-value=0.00014 Score=82.22 Aligned_cols=201 Identities=13% Similarity=0.188 Sum_probs=101.1
Q ss_pred cCCccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeC---CCCCHHHH
Q 003367 76 DVSKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFS---DPVDEIRV 152 (826)
Q Consensus 76 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~---~~~~~~~~ 152 (826)
...+++|-++.++++..++....- .....+++.|+|++|+||||+++.++.... ++..-|+... ...+...+
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~l~----~~~~Ew~npv~~~~~~~~~~~ 156 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKELG----IQVQEWSNPTLPDFQKNDHKV 156 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHHhh----hHHHHHhhhhhhccccccccc
Confidence 345799999999999999875432 122346899999999999999999998432 2222332211 00111111
Q ss_pred HHHHHHHhcccchhhhhHHHHHHHHHHH-------hcCCceeEEeccCCC---CChhhHHHHHh-hhcCCCCCcEEEEec
Q 003367 153 AKAILESFRDVVSAVAAFDTLLRHIEKS-------VKGKKFLLVLDDVWS---GNPTKWEELVS-TLKFGSPESRILVTT 221 (826)
Q Consensus 153 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~-------l~~k~~LlVlDdv~~---~~~~~~~~l~~-~~~~~~~~s~iivTt 221 (826)
...+.+++.................... ..+++.+|+||++.. .....+..+.. .+...+.-.-|++||
T Consensus 157 ~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI~I~T 236 (637)
T TIGR00602 157 TLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVFIIT 236 (637)
T ss_pred chhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEEEEec
Confidence 2223333322222222233333222221 135678999999932 12223444444 222222223455555
Q ss_pred ccHH---------HH------hhc---cccceEEccCCCCchhHHHHHHhhhcCCCcccch---hhHHHHHHHHHhcCCC
Q 003367 222 RKED---------VA------KMM---RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQ---KLTDIGRMIADKCNGL 280 (826)
Q Consensus 222 R~~~---------v~------~~~---~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~---~~~~~~~~i~~~~~gl 280 (826)
-... .. ..+ .....+.+.+++..+-.+.+...+-......... .-.+..+.|+..++|-
T Consensus 237 E~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GD 316 (637)
T TIGR00602 237 ESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGD 316 (637)
T ss_pred CCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCCh
Confidence 2211 00 011 1234578888888886666655543211100000 0134556676677664
Q ss_pred c
Q 003367 281 P 281 (826)
Q Consensus 281 P 281 (826)
-
T Consensus 317 i 317 (637)
T TIGR00602 317 I 317 (637)
T ss_pred H
Confidence 3
No 155
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.84 E-value=5.6e-05 Score=68.47 Aligned_cols=96 Identities=26% Similarity=0.250 Sum_probs=52.4
Q ss_pred EEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcC-Cce
Q 003367 108 ISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKG-KKF 186 (826)
Q Consensus 108 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-k~~ 186 (826)
|.|+|+.|+||||+|+.+++... . .++.++.+.-.+. ........+...+.+.-.. ++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~--~---~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG--F---PFIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT--S---EEEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhcc--c---ccccccccccccc---------------cccccccccccccccccccccce
Confidence 57999999999999999999542 1 1334443321100 0111122233333333233 489
Q ss_pred eEEeccCCCCChhh-----------HHHHHhhhcCCCC---CcEEEEeccc
Q 003367 187 LLVLDDVWSGNPTK-----------WEELVSTLKFGSP---ESRILVTTRK 223 (826)
Q Consensus 187 LlVlDdv~~~~~~~-----------~~~l~~~~~~~~~---~s~iivTtR~ 223 (826)
+|++||++.-.... ...+...+..... +..||.||..
T Consensus 61 vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 61 VLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp EEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred eeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 99999994422222 3444444444332 3566777765
No 156
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.83 E-value=5.7e-05 Score=79.57 Aligned_cols=73 Identities=19% Similarity=0.265 Sum_probs=40.1
Q ss_pred ccCCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCCCC
Q 003367 616 LESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLPSL 695 (826)
Q Consensus 616 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l 695 (826)
+..+..+..|.++.+.+...+ .-+++|++|.+++|......|..+ .++|++|++++|.....+|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP------------~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-- 111 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP------------VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-- 111 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC------------CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc--
Confidence 445566777777666433211 123467777777654433335544 3577777777774444444
Q ss_pred CCCCccceeecc
Q 003367 696 GRLPSLESLVVE 707 (826)
Q Consensus 696 ~~l~~L~~L~L~ 707 (826)
++|+.|++.
T Consensus 112 ---~sLe~L~L~ 120 (426)
T PRK15386 112 ---ESVRSLEIK 120 (426)
T ss_pred ---cccceEEeC
Confidence 345555554
No 157
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.82 E-value=0.00034 Score=76.90 Aligned_cols=167 Identities=17% Similarity=0.221 Sum_probs=92.0
Q ss_pred CccccchHHHHHHHHHHcCCCC-------CCCCCccEEEEEecCCCcHHHHHHHHhccccccc---CCCcEEEEEeCCCC
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSS-------QEKMSLPIISILGTGGVGKTTLARLVFNEVKVDA---HFDKRIWVCFSDPV 147 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~f~~~~wv~~~~~~ 147 (826)
.++.|.+..++++.+.+..+-. -+-..++-|.++|++|.|||++|+++++...... .+....|+.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 4588999999998887642110 0112345689999999999999999999543111 1123344444321
Q ss_pred CHHHHHHHHHHHhcccchhhhhHHHHHHHHHHH-hcCCceeEEeccCCCCC-------hhh-----HHHHHhhhcCC--C
Q 003367 148 DEIRVAKAILESFRDVVSAVAAFDTLLRHIEKS-VKGKKFLLVLDDVWSGN-------PTK-----WEELVSTLKFG--S 212 (826)
Q Consensus 148 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~-------~~~-----~~~l~~~~~~~--~ 212 (826)
.++....+. .......+.+..++. -.+++++|+||+++.-- ..+ ...+...+... .
T Consensus 261 -------eLl~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 261 -------ELLNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred -------hhcccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC
Confidence 111111110 111122233333322 23578999999995310 011 12333333321 2
Q ss_pred CCcEEEEecccHHHHhh--c---cccceEEccCCCCchhHHHHHHhh
Q 003367 213 PESRILVTTRKEDVAKM--M---RTTSMILLAKLPDNDCWSLFSQIA 254 (826)
Q Consensus 213 ~~s~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~a 254 (826)
.+..||.||........ . .-+..+++...+.++..++|..+.
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 34456666665543221 1 224568999999999999998875
No 158
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=1.1e-06 Score=85.62 Aligned_cols=162 Identities=19% Similarity=0.229 Sum_probs=109.6
Q ss_pred hccCCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCC--CCcccCccCCcEEEEecCCCCCCC
Q 003367 615 KLESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIIS--PSWLMSLTELRMLNLQRCGKCEQL 692 (826)
Q Consensus 615 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~--p~~l~~l~~L~~L~L~~~~~~~~l 692 (826)
.++.+..|+.|+++++.+ ++.+...+..-.+|+.|+|+++.+...- --.+.+++.|..|+|++|.+....
T Consensus 205 iLs~C~kLk~lSlEg~~L--------dD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~ 276 (419)
T KOG2120|consen 205 ILSQCSKLKNLSLEGLRL--------DDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK 276 (419)
T ss_pred HHHHHHhhhhcccccccc--------CcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchh
Confidence 456677888888887774 3445556666789999999988654310 123458999999999999876432
Q ss_pred C--CC-CCCCccceeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCCCcc
Q 003367 693 P--SL-GRLPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRL 769 (826)
Q Consensus 693 ~--~l-~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L 769 (826)
- .. .--++|+.|+|+++...-. .+.+. .....+|+|..|+|++|..++.-.. ..+-.|+.|
T Consensus 277 Vtv~V~hise~l~~LNlsG~rrnl~-~sh~~----------tL~~rcp~l~~LDLSD~v~l~~~~~-----~~~~kf~~L 340 (419)
T KOG2120|consen 277 VTVAVAHISETLTQLNLSGYRRNLQ-KSHLS----------TLVRRCPNLVHLDLSDSVMLKNDCF-----QEFFKFNYL 340 (419)
T ss_pred hhHHHhhhchhhhhhhhhhhHhhhh-hhHHH----------HHHHhCCceeeeccccccccCchHH-----HHHHhcchh
Confidence 1 11 1126899999998763211 01111 1124789999999999977765322 345579999
Q ss_pred ceeeecCCCCCCCCCC---CCcccCCcceEEEcccc
Q 003367 770 HRLKLDGCHKLKALPD---HLLLTTKMNELTMNWCS 802 (826)
Q Consensus 770 ~~L~l~~c~~l~~lp~---~l~~l~~L~~L~l~~c~ 802 (826)
++|.++.|-.+ +|. .+...++|.+|++.+|-
T Consensus 341 ~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 341 QHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 99999999754 343 34567899999999874
No 159
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.79 E-value=3e-05 Score=54.05 Aligned_cols=34 Identities=50% Similarity=0.682 Sum_probs=19.4
Q ss_pred CccEEEccCCCCccccchhhcCCCCCcEEeccCCC
Q 003367 492 HLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCG 526 (826)
Q Consensus 492 ~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~ 526 (826)
+|++|++++|. +..+|+.+++|++|++|++++|.
T Consensus 2 ~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCC-CcccCchHhCCCCCCEEEecCCC
Confidence 45666666665 55555556666666666666665
No 160
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.79 E-value=0.00014 Score=78.68 Aligned_cols=158 Identities=15% Similarity=0.188 Sum_probs=88.5
Q ss_pred ccccchHHHHHHHHHHcCCCC-------CCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHH
Q 003367 79 KVRGRDEEKKTIIDLLLGSSS-------QEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIR 151 (826)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 151 (826)
++.|.+..+++|.+.+..+-. -+-...+-|.++|++|+|||++|+++++.. ...| +.+..+.
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el--~~~f---i~V~~se------ 252 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET--SATF---LRVVGSE------ 252 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh--CCCE---EEEecch------
Confidence 467899999988887742211 011245678899999999999999999843 3333 2222111
Q ss_pred HHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCC--------C---hh---hHHHHHhhhcC--CCCCc
Q 003367 152 VAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSG--------N---PT---KWEELVSTLKF--GSPES 215 (826)
Q Consensus 152 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--------~---~~---~~~~l~~~~~~--~~~~s 215 (826)
+ .....+. ....+...+.....+.+.+|+||++..- . .. ....+...+.. ...+.
T Consensus 253 L----~~k~~Ge-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V 323 (438)
T PTZ00361 253 L----IQKYLGD-----GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDV 323 (438)
T ss_pred h----hhhhcch-----HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCe
Confidence 1 1111110 0011222222233467889999997320 0 00 01112222221 13356
Q ss_pred EEEEecccHHHHhh--c---cccceEEccCCCCchhHHHHHHhhhc
Q 003367 216 RILVTTRKEDVAKM--M---RTTSMILLAKLPDNDCWSLFSQIAFS 256 (826)
Q Consensus 216 ~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~a~~ 256 (826)
+||+||........ + ..+..+++...+.++..++|..++..
T Consensus 324 ~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 324 KVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred EEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 78888876544332 1 22567889999999999999877543
No 161
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.76 E-value=0.0002 Score=65.63 Aligned_cols=87 Identities=25% Similarity=0.190 Sum_probs=45.9
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCC-
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGK- 184 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k- 184 (826)
..+.|+|++|+||||+|+.++.... .....++++..+........... ................ ...+.+..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG--PPGGGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELR-LRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC--CCCCCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHH-HHHHHHHHHhcC
Confidence 5799999999999999999998443 22224556655443322222111 0111111111111122 22333333333
Q ss_pred ceeEEeccCCCC
Q 003367 185 KFLLVLDDVWSG 196 (826)
Q Consensus 185 ~~LlVlDdv~~~ 196 (826)
..+|++|+++..
T Consensus 79 ~~viiiDei~~~ 90 (148)
T smart00382 79 PDVLILDEITSL 90 (148)
T ss_pred CCEEEEECCccc
Confidence 499999999654
No 162
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.75 E-value=3.2e-05 Score=53.94 Aligned_cols=40 Identities=33% Similarity=0.460 Sum_probs=33.9
Q ss_pred CCCcEEeccCCCCCcccchhhhcccCCCeeeecCcccccCC
Q 003367 515 CNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPLLYLP 555 (826)
Q Consensus 515 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp 555 (826)
++|++|++++|. +..+|..+++|++|++|++++|+++.++
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 579999999998 5678888999999999999999988765
No 163
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.75 E-value=0.00063 Score=71.98 Aligned_cols=139 Identities=17% Similarity=0.184 Sum_probs=83.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcC
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKG 183 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 183 (826)
....+.|||..|.|||.|++++.+. ..........++++ .+.....++..+.. .-.+.+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~~----se~f~~~~v~a~~~---------~~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYLT----SEDFTNDFVKALRD---------NEMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEecc----HHHHHHHHHHHHHh---------hhHHHHHHhh--
Confidence 4678999999999999999999994 33444433333332 33444444444332 1222333333
Q ss_pred CceeEEeccCCCCC-hhhH-HHHHhhhcC-CCCCcEEEEecccH---------HHHhhccccceEEccCCCCchhHHHHH
Q 003367 184 KKFLLVLDDVWSGN-PTKW-EELVSTLKF-GSPESRILVTTRKE---------DVAKMMRTTSMILLAKLPDNDCWSLFS 251 (826)
Q Consensus 184 k~~LlVlDdv~~~~-~~~~-~~l~~~~~~-~~~~s~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 251 (826)
.-=++++||++--. .+.| +.+...+.. ...|-.||+|++.. .+...+...-++++.+.+++....++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 33389999995421 1122 233333332 22344899998643 233334456789999999999999998
Q ss_pred HhhhcCCC
Q 003367 252 QIAFSGRT 259 (826)
Q Consensus 252 ~~a~~~~~ 259 (826)
+.+.....
T Consensus 255 kka~~~~~ 262 (408)
T COG0593 255 KKAEDRGI 262 (408)
T ss_pred HHHHhcCC
Confidence 87654443
No 164
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.73 E-value=0.00037 Score=83.30 Aligned_cols=156 Identities=17% Similarity=0.211 Sum_probs=83.0
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccC----CCcEEE-EEeCCCCCHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAH----FDKRIW-VCFSDPVDEIRV 152 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~w-v~~~~~~~~~~~ 152 (826)
..++||+.+++++++.|.... ..-+.++|.+|+|||++|+.++........ ....+| +.+ ..+
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~------~~l 240 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM------GAL 240 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH------HHH
Confidence 359999999999999996532 234668999999999999999985321111 122233 221 111
Q ss_pred HHHHHHHhcccchhhhhHH-HHHHHHHHHh-cCCceeEEeccCCCCC-----h--hhHHHHHhhhcCCCCCcEEEEeccc
Q 003367 153 AKAILESFRDVVSAVAAFD-TLLRHIEKSV-KGKKFLLVLDDVWSGN-----P--TKWEELVSTLKFGSPESRILVTTRK 223 (826)
Q Consensus 153 ~~~i~~~l~~~~~~~~~~~-~~~~~l~~~l-~~k~~LlVlDdv~~~~-----~--~~~~~l~~~~~~~~~~s~iivTtR~ 223 (826)
.. +. ....+.+ .+...+.+.- .+++.+|++|+++.-. . .+...+....... ..-++|-+|..
T Consensus 241 ----~a---~~-~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~-g~i~~IgaTt~ 311 (852)
T TIGR03346 241 ----IA---GA-KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR-GELHCIGATTL 311 (852)
T ss_pred ----hh---cc-hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc-CceEEEEeCcH
Confidence 10 00 0011122 2222222222 2468999999995311 0 0111222221111 12355555554
Q ss_pred HHHHhh-------ccccceEEccCCCCchhHHHHHHhh
Q 003367 224 EDVAKM-------MRTTSMILLAKLPDNDCWSLFSQIA 254 (826)
Q Consensus 224 ~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~a 254 (826)
...... ...-..+.+...+.++..+++....
T Consensus 312 ~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 312 DEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 433211 1112467888889999988887653
No 165
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.73 E-value=0.00015 Score=76.59 Aligned_cols=76 Identities=24% Similarity=0.460 Sum_probs=49.9
Q ss_pred hccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhc
Q 003367 458 FDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAK 537 (826)
Q Consensus 458 ~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~ 537 (826)
+..+.+++.|+++ +| .+..+|. --.+|+.|.+++|..+..+|..+. .+|++|++++|..+..+|.
T Consensus 48 ~~~~~~l~~L~Is-----~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~---- 112 (426)
T PRK15386 48 IEEARASGRLYIK-----DC-DIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE---- 112 (426)
T ss_pred HHHhcCCCEEEeC-----CC-CCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc----
Confidence 5556778888887 56 6666662 123588888887776777776553 5788888887755666664
Q ss_pred ccCCCeeeecCcc
Q 003367 538 LINLRHLINEGTP 550 (826)
Q Consensus 538 L~~L~~L~l~~~~ 550 (826)
+|+.|+++++.
T Consensus 113 --sLe~L~L~~n~ 123 (426)
T PRK15386 113 --SVRSLEIKGSA 123 (426)
T ss_pred --ccceEEeCCCC
Confidence 35555565443
No 166
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.70 E-value=0.00043 Score=80.40 Aligned_cols=157 Identities=17% Similarity=0.227 Sum_probs=85.8
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhccccccc---C-CCcEEEEEeCCCCCHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDA---H-FDKRIWVCFSDPVDEIRVA 153 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~-f~~~~wv~~~~~~~~~~~~ 153 (826)
..++||+++++++++.|.... ..-+.++|.+|+|||++|+.++....... . .++.+|.. +...+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l- 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL- 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH-
Confidence 358999999999999987642 22356899999999999999997431111 1 13344421 11111
Q ss_pred HHHHHHhcccchhhhhHHHHHHHHHHHh-cCCceeEEeccCCCC--------ChhhHHHHHhhhcCCCCCcEEEEecccH
Q 003367 154 KAILESFRDVVSAVAAFDTLLRHIEKSV-KGKKFLLVLDDVWSG--------NPTKWEELVSTLKFGSPESRILVTTRKE 224 (826)
Q Consensus 154 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--------~~~~~~~l~~~~~~~~~~s~iivTtR~~ 224 (826)
+ .+. ....+.+.....+.+.+ +.++.+|++|+++.- ...+...+...+... ..-++|-+|...
T Consensus 254 ---l---aG~-~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~ 325 (758)
T PRK11034 254 ---L---AGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQ 325 (758)
T ss_pred ---h---ccc-chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChH
Confidence 1 110 00112222222222222 356789999999521 112222233333222 234555555544
Q ss_pred HHHhh-------ccccceEEccCCCCchhHHHHHHhh
Q 003367 225 DVAKM-------MRTTSMILLAKLPDNDCWSLFSQIA 254 (826)
Q Consensus 225 ~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~a 254 (826)
+.... ..--..+.+...+.+++.+++....
T Consensus 326 E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 32211 1112478999999999999988653
No 167
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.69 E-value=0.00055 Score=73.71 Aligned_cols=178 Identities=16% Similarity=0.160 Sum_probs=95.2
Q ss_pred ccccchHHHHHHHHHHcCCCC-------CCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHH
Q 003367 79 KVRGRDEEKKTIIDLLLGSSS-------QEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIR 151 (826)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 151 (826)
++.|.+..+++|.+.+..+-. -+-..++-|.++|++|.|||++|+++++.. ...| +.+.. ..
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l--~~~f---i~i~~------s~ 214 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT--TATF---IRVVG------SE 214 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc--CCCE---EEEeh------HH
Confidence 478999888888776542100 012345779999999999999999999843 2222 22211 11
Q ss_pred HHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCC-------C---hhh----HHHHHhhhcC--CCCCc
Q 003367 152 VAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSG-------N---PTK----WEELVSTLKF--GSPES 215 (826)
Q Consensus 152 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-------~---~~~----~~~l~~~~~~--~~~~s 215 (826)
+ .....+. ....+.+.+.......+.+|++|++..- . ... +..+...+.. ...+.
T Consensus 215 l----~~k~~ge-----~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v 285 (398)
T PTZ00454 215 F----VQKYLGE-----GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNV 285 (398)
T ss_pred H----HHHhcch-----hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCE
Confidence 1 1111110 0111222233333567899999998421 0 011 1122222221 22456
Q ss_pred EEEEecccHHHHhh--c---cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCc
Q 003367 216 RILVTTRKEDVAKM--M---RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLP 281 (826)
Q Consensus 216 ~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glP 281 (826)
.||+||........ . ..+..+++...+.++..++|..+...... ....++ .++++.+.|.-
T Consensus 286 ~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l-~~dvd~----~~la~~t~g~s 351 (398)
T PTZ00454 286 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNL-SEEVDL----EDFVSRPEKIS 351 (398)
T ss_pred EEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCC-CcccCH----HHHHHHcCCCC
Confidence 78888876543321 1 22556888888888888888766533221 222233 34566666654
No 168
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.68 E-value=0.0017 Score=67.40 Aligned_cols=176 Identities=14% Similarity=0.106 Sum_probs=101.7
Q ss_pred HHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCC----------------CcEEEEEeCCCCCH
Q 003367 86 EKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHF----------------DKRIWVCFSDPVDE 149 (826)
Q Consensus 86 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f----------------~~~~wv~~~~~~~~ 149 (826)
..+.+...+... .-...+.++|+.|+||+++|..+++..-..... .-..|+........
T Consensus 12 ~~~~l~~~~~~~-----rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~ 86 (319)
T PRK08769 12 AYDQTVAALDAG-----RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTG 86 (319)
T ss_pred HHHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCccc
Confidence 445566666433 234568899999999999999998743221111 01122210000000
Q ss_pred HHHHHHHHHHhcccchhhhhHHHHHHHHH---HH-hcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEeccc-H
Q 003367 150 IRVAKAILESFRDVVSAVAAFDTLLRHIE---KS-VKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRK-E 224 (826)
Q Consensus 150 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~---~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~-~ 224 (826)
......-.++++.+... .. ..+++-++|+|++...+...-..++..+....+++.+|++|.. .
T Consensus 87 ------------~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~ 154 (319)
T PRK08769 87 ------------DKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPA 154 (319)
T ss_pred ------------ccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChh
Confidence 00000111223222221 11 1356679999999666666777788888777777777776664 3
Q ss_pred HHHhhcc-ccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHHh
Q 003367 225 DVAKMMR-TTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTSG 288 (826)
Q Consensus 225 ~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~ 288 (826)
.+...+. -...+.+.+++.+++.+.+.... . + .+.+..++..++|.|+....+.
T Consensus 155 ~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~---~---~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 155 RLPATIRSRCQRLEFKLPPAHEALAWLLAQG---V---S----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred hCchHHHhhheEeeCCCcCHHHHHHHHHHcC---C---C----hHHHHHHHHHcCCCHHHHHHHh
Confidence 3433322 25678899999999988886531 1 1 2235678999999998665543
No 169
>PRK08116 hypothetical protein; Validated
Probab=97.66 E-value=0.00018 Score=73.36 Aligned_cols=103 Identities=23% Similarity=0.255 Sum_probs=59.2
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCc
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKK 185 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 185 (826)
..+.|+|..|+|||.||.++++... .+...+++++ ..+++..+...+.... .....+ +.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~--~~~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~~~----~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI--EKGVPVIFVN------FPQLLNRIKSTYKSSG--KEDENE----IIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEE------HHHHHHHHHHHHhccc--cccHHH----HHHHhcCCC
Confidence 4588999999999999999999543 2333456665 3344555544433211 111112 223333333
Q ss_pred eeEEeccCCCCChhhHHH--HHhhhcC-CCCCcEEEEeccc
Q 003367 186 FLLVLDDVWSGNPTKWEE--LVSTLKF-GSPESRILVTTRK 223 (826)
Q Consensus 186 ~LlVlDdv~~~~~~~~~~--l~~~~~~-~~~~s~iivTtR~ 223 (826)
||||||+..+...+|.. +...+.. ...+..+|+||..
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 89999996544444543 3333332 2345679999974
No 170
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.65 E-value=1e-06 Score=95.63 Aligned_cols=176 Identities=24% Similarity=0.212 Sum_probs=91.2
Q ss_pred cccccCCCCccEEEccCCCCccccchhhcCCC-CCcEEeccCCCCCcccchhhhc----------ccCCCeeeecCcccc
Q 003367 484 PRNIKKLKHLRYLNLSNNDAIYELPEALCDLC-NLQTLDVSNCGNLHALPQGIAK----------LINLRHLINEGTPLL 552 (826)
Q Consensus 484 p~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~-~L~~L~L~~~~~~~~lp~~i~~----------L~~L~~L~l~~~~l~ 552 (826)
|-.|..+..||.|.|++|. ++..- .+..++ .|++|..++ . +..+-..|.. ...|..-+.++|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~-L~~~~-GL~~lr~qLe~LIC~~-S-l~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCD-LSTAK-GLQELRHQLEKLICHN-S-LDALRHVFASCGGDISNSPVWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcc-hhhhh-hhHHHHHhhhhhhhhc-c-HHHHHHHHHHhccccccchhhhhHhhhhcchhhHH
Confidence 5567778888888888887 44322 122222 344443322 1 1112111110 123444455566666
Q ss_pred cCCccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCCcCCceeeEeecC
Q 003367 553 YLPKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKHLVCLRLEFIKL 632 (826)
Q Consensus 553 ~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 632 (826)
.+...+.-++.|+.|+++.|... ....+..+.+|++|+|++|.+
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~------------------------------------~v~~Lr~l~~LkhLDlsyN~L 221 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFT------------------------------------KVDNLRRLPKLKHLDLSYNCL 221 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhh------------------------------------hhHHHHhcccccccccccchh
Confidence 55555555556666655544321 112333445555666666654
Q ss_pred CCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCC--CCCCCCCCccceeeccccc
Q 003367 633 GRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQ--LPSLGRLPSLESLVVEALS 710 (826)
Q Consensus 633 ~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~--l~~l~~l~~L~~L~L~~~~ 710 (826)
....-.. ... ..|..|.|++|.++.+ ..+.++.+|+.||+++|-+.+. +..++.|..|+.|+|.+++
T Consensus 222 ~~vp~l~--------~~g-c~L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 222 RHVPQLS--------MVG-CKLQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ccccccc--------hhh-hhheeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 3322110 001 1367777777766663 4466777777777777766542 3356666677777776544
No 171
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.0011 Score=69.95 Aligned_cols=163 Identities=12% Similarity=0.078 Sum_probs=92.8
Q ss_pred cccc-chHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 79 KVRG-RDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 79 ~~vG-r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
.++| -+..++.+...+... .-.....++|+.|+||||+|+.+++..-........ +......-..+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHh
Confidence 3566 666777777777543 234567999999999999999997743211100000 000000000000
Q ss_pred HH----hc--ccchhhhhHHHHHHHHHHH----hcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccHH-H
Q 003367 158 ES----FR--DVVSAVAAFDTLLRHIEKS----VKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKED-V 226 (826)
Q Consensus 158 ~~----l~--~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~~-v 226 (826)
.. +. ........++++.+.+... ..+.+-++|+|++..-+......++..+.....++.+|++|.+.. +
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 00 00 0000111122332222211 235566899999976667777888888887777887777776543 3
Q ss_pred Hhhc-cccceEEccCCCCchhHHHHHHh
Q 003367 227 AKMM-RTTSMILLAKLPDNDCWSLFSQI 253 (826)
Q Consensus 227 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 253 (826)
...+ .....+++.+++.++..+.+...
T Consensus 154 l~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 154 LPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 3322 23568999999999988888653
No 172
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.64 E-value=0.00044 Score=82.31 Aligned_cols=46 Identities=30% Similarity=0.435 Sum_probs=38.5
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhccc
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
..++||+.++.++++.|.... ..-+.++|.+|+|||++|+.++...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHHh
Confidence 459999999999999996542 2346799999999999999999853
No 173
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.62 E-value=0.00024 Score=67.02 Aligned_cols=115 Identities=20% Similarity=0.209 Sum_probs=71.6
Q ss_pred CCccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHH
Q 003367 77 VSKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAI 156 (826)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 156 (826)
-.++||-++.++++.-.-.+. +.+-+.|.||+|+||||-+..+++..-....-+.+.-.++|+...+.-+.
T Consensus 26 l~dIVGNe~tv~rl~via~~g------nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVR--- 96 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAKEG------NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVR--- 96 (333)
T ss_pred HHHhhCCHHHHHHHHHHHHcC------CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHH---
Confidence 356999999999988776443 56678899999999999888888754322222455555555544332222
Q ss_pred HHHhcccchhhhhHHHHHHHHHHHh-------cCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEE
Q 003367 157 LESFRDVVSAVAAFDTLLRHIEKSV-------KGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRIL 218 (826)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~~l~~~l-------~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~ii 218 (826)
..++.+- .++.-.||||..++.....-.++.+...-..+.+|..
T Consensus 97 ------------------n~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFa 147 (333)
T KOG0991|consen 97 ------------------NKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFA 147 (333)
T ss_pred ------------------HHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhh
Confidence 2222211 3556689999996655555556666554444444443
No 174
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.60 E-value=0.0015 Score=61.15 Aligned_cols=137 Identities=16% Similarity=0.186 Sum_probs=79.2
Q ss_pred cchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccC------------------CCcEEEEEe
Q 003367 82 GRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAH------------------FDKRIWVCF 143 (826)
Q Consensus 82 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~------------------f~~~~wv~~ 143 (826)
|-++..+.+...+.... -...+.++|..|+||+|+|.++++..-.... ...+.|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 55677778888775542 4567899999999999999999875322211 122333322
Q ss_pred CCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHh-----cCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEE
Q 003367 144 SDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSV-----KGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRIL 218 (826)
Q Consensus 144 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~ii 218 (826)
.... ..-..+++. .+.+.+ .++.=++|+||+..-..+.+..++..+.....++++|
T Consensus 76 ~~~~------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 76 DKKK------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp TTSS------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred cccc------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 2110 011223322 222222 2456689999998778888899999998888899999
Q ss_pred EecccHH-HHhhc-cccceEEccCCC
Q 003367 219 VTTRKED-VAKMM-RTTSMILLAKLP 242 (826)
Q Consensus 219 vTtR~~~-v~~~~-~~~~~~~l~~L~ 242 (826)
++|++.. +.... .-...+.+.+++
T Consensus 137 L~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 137 LITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEECChHHChHHHHhhceEEecCCCC
Confidence 8888754 33222 223456665553
No 175
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00018 Score=81.76 Aligned_cols=135 Identities=21% Similarity=0.368 Sum_probs=87.9
Q ss_pred CccccchHHHHHHHHHHcCCCC---CCCCCccEEEEEecCCCcHHHHHHHHhcccccccCC---CcEEEEEeCCCCCHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSS---QEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHF---DKRIWVCFSDPVDEIR 151 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~~~~~~ 151 (826)
..++|.++.++.+.+.+..... ..+....+....|+.|||||.||++++.. -| +..+-++.|+-
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~DMSEy----- 560 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRIDMSEY----- 560 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceeechHHH-----
Confidence 4699999999999998865432 12345567888999999999999999983 34 33444444432
Q ss_pred HHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCce-eEEeccCCCCChhhHHHHHhhhcCCC-----------CCcEEEE
Q 003367 152 VAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKF-LLVLDDVWSGNPTKWEELVSTLKFGS-----------PESRILV 219 (826)
Q Consensus 152 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~l~~~~~~~~-----------~~s~iiv 219 (826)
..+.-++.|-+.++.-...++ .-.+.+..+.++| +|.||+|..-+++-++-++..+..+. +++-||.
T Consensus 561 ~EkHsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIIm 639 (786)
T COG0542 561 MEKHSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIM 639 (786)
T ss_pred HHHHHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEE
Confidence 223334444444443322222 2334455567777 89999997667777788888776652 4456777
Q ss_pred eccc
Q 003367 220 TTRK 223 (826)
Q Consensus 220 TtR~ 223 (826)
||.-
T Consensus 640 TSN~ 643 (786)
T COG0542 640 TSNA 643 (786)
T ss_pred eccc
Confidence 8763
No 176
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.58 E-value=0.00021 Score=77.89 Aligned_cols=189 Identities=19% Similarity=0.236 Sum_probs=117.2
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
+++||-+.-.+.|...+.... -..--...|+-|+||||+|+-++.-...... ....+......-++|.
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-------~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCENG-------PTAEPCGKCISCKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCCCC-------CCCCcchhhhhhHhhh
Confidence 457999999999999987643 2334568999999999999999874432211 1111222222223332
Q ss_pred HH-----hcccchhhhhHHHHHHHHHHHh----cCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccH-HHH
Q 003367 158 ES-----FRDVVSAVAAFDTLLRHIEKSV----KGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKE-DVA 227 (826)
Q Consensus 158 ~~-----l~~~~~~~~~~~~~~~~l~~~l----~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~-~v~ 227 (826)
.- +..+......++++.+.+.+.. .++-=+.|+|.|+--+...|..++..+.......+.|+.|.+. .+.
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 21 0001111223334333333322 3455589999998778889999988887777777777766654 332
Q ss_pred h-hccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCch
Q 003367 228 K-MMRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPL 282 (826)
Q Consensus 228 ~-~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPL 282 (826)
. .+.....|.++.++.++-...+...+.......+ .+....|++..+|..-
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e----~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE----EDALSLIARAAEGSLR 215 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCCccC----HHHHHHHHHHcCCChh
Confidence 2 2334578999999999988888887755444333 4555667777766443
No 177
>CHL00176 ftsH cell division protein; Validated
Probab=97.55 E-value=0.00096 Score=76.11 Aligned_cols=178 Identities=15% Similarity=0.208 Sum_probs=97.1
Q ss_pred CccccchHHHHHHHHHH---cCCCC---CCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHH
Q 003367 78 SKVRGRDEEKKTIIDLL---LGSSS---QEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIR 151 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L---~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 151 (826)
.++.|.++..+++.+.+ ..+.. -+....+-|.++|++|+|||++|++++... ... |+.++. .+
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~~p-----~i~is~----s~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--EVP-----FFSISG----SE 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CCC-----eeeccH----HH
Confidence 46888887766665543 32211 012235569999999999999999999843 122 233221 11
Q ss_pred HHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCC----------ChhhHHH----HHhhhcC--CCCCc
Q 003367 152 VAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSG----------NPTKWEE----LVSTLKF--GSPES 215 (826)
Q Consensus 152 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------~~~~~~~----l~~~~~~--~~~~s 215 (826)
+. ....+ .....+...+.+.....+++|++||++.- ....++. +...+.. ...+.
T Consensus 252 f~----~~~~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 252 FV----EMFVG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred HH----HHhhh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 11 11100 01122333444555678899999999421 0112222 2222221 23455
Q ss_pred EEEEecccHHHHhh-----ccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCC
Q 003367 216 RILVTTRKEDVAKM-----MRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGL 280 (826)
Q Consensus 216 ~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~gl 280 (826)
.||.||........ ..-+..+.+...+.++-.++++.++..... .. ......+++.+.|.
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~----d~~l~~lA~~t~G~ 387 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SP----DVSLELIARRTPGF 387 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-ch----hHHHHHHHhcCCCC
Confidence 67777766443221 122467888888888888888887643211 11 22345677777773
No 178
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.51 E-value=0.0014 Score=73.69 Aligned_cols=181 Identities=17% Similarity=0.190 Sum_probs=94.8
Q ss_pred cCCccccchHHHHHHHHHHc---CCC---CCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCH
Q 003367 76 DVSKVRGRDEEKKTIIDLLL---GSS---SQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDE 149 (826)
Q Consensus 76 ~~~~~vGr~~~~~~l~~~L~---~~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 149 (826)
.-.+++|.++.++++.+++. ... ..+....+-+.++|++|+|||++|++++.... .. ++.++.
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~--~~-----~~~i~~---- 121 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG--VP-----FFSISG---- 121 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC--CC-----eeeccH----
Confidence 33568898887776655443 111 00122345688999999999999999998432 22 222221
Q ss_pred HHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCC----------hhhHHH----HHhhhcC--CCC
Q 003367 150 IRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGN----------PTKWEE----LVSTLKF--GSP 213 (826)
Q Consensus 150 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~----l~~~~~~--~~~ 213 (826)
.++. ....+. ....+...+.......+.+|++||++.-. ...+.. +...+.. ...
T Consensus 122 ~~~~----~~~~g~-----~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 122 SDFV----EMFVGV-----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred HHHH----HHHhcc-----cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 1111 111110 11223333444445677899999993310 111222 2222221 223
Q ss_pred CcEEEEecccHHHHh-----hccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCc
Q 003367 214 ESRILVTTRKEDVAK-----MMRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLP 281 (826)
Q Consensus 214 ~s~iivTtR~~~v~~-----~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glP 281 (826)
+-.||.||....... ...-+..+.+...+.++-.++|..+...... ... .....+++.+.|.-
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~----~~l~~la~~t~G~s 260 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APD----VDLKAVARRTPGFS 260 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccc----hhHHHHHHhCCCCC
Confidence 445666676543211 1123567888888888888888876533221 111 12346777777743
No 179
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.50 E-value=0.0013 Score=71.26 Aligned_cols=119 Identities=24% Similarity=0.283 Sum_probs=75.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCce
Q 003367 107 IISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKF 186 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~ 186 (826)
++.|.|+-++||||+++.+..... +. .+++.+-+......-+.+.. ..+.+.-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~--~~---~iy~~~~d~~~~~~~l~d~~-----------------~~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLL--EE---IIYINFDDLRLDRIELLDLL-----------------RAYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCC--cc---eEEEEecchhcchhhHHHHH-----------------HHHHHhhccCCc
Confidence 999999999999999977776322 22 55555443221111111111 111111112788
Q ss_pred eEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccHHHHhh-----c-cccceEEccCCCCchhHHHH
Q 003367 187 LLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKEDVAKM-----M-RTTSMILLAKLPDNDCWSLF 250 (826)
Q Consensus 187 LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~~v~~~-----~-~~~~~~~l~~L~~~~~~~lf 250 (826)
.++||.| .....|+.....+...++. +|++|+-+..+... + +-...+++.||+..|...+-
T Consensus 97 yifLDEI--q~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 97 YIFLDEI--QNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred eEEEecc--cCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 9999999 5567899887777766655 88888887654322 1 23567889999998876653
No 180
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.50 E-value=0.003 Score=64.51 Aligned_cols=124 Identities=21% Similarity=0.263 Sum_probs=66.0
Q ss_pred HHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH-------
Q 003367 85 EEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL------- 157 (826)
Q Consensus 85 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~------- 157 (826)
+-++++..++... +-|.|.|.+|+|||++|++++. ... ...+.+++....+..+++....
T Consensus 9 ~l~~~~l~~l~~g--------~~vLL~G~~GtGKT~lA~~la~--~lg---~~~~~i~~~~~~~~~dllg~~~~~~~~~~ 75 (262)
T TIGR02640 9 RVTSRALRYLKSG--------YPVHLRGPAGTGKTTLAMHVAR--KRD---RPVMLINGDAELTTSDLVGSYAGYTRKKV 75 (262)
T ss_pred HHHHHHHHHHhcC--------CeEEEEcCCCCCHHHHHHHHHH--HhC---CCEEEEeCCccCCHHHHhhhhcccchhhH
Confidence 3345555555432 2477999999999999999997 222 2344566666555544433211
Q ss_pred -HHhc----ccch-hhhhHHHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCC----------------CCCc
Q 003367 158 -ESFR----DVVS-AVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFG----------------SPES 215 (826)
Q Consensus 158 -~~l~----~~~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~----------------~~~s 215 (826)
..+. .... ....+. ...+.... .+...+++|++..-+++.+..+...+..+ .++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~--~g~l~~A~-~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~f 152 (262)
T TIGR02640 76 HDQFIHNVVKLEDIVRQNWV--DNRLTLAV-REGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEF 152 (262)
T ss_pred HHHHHHHhhhhhcccceeec--CchHHHHH-HcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCC
Confidence 0000 0000 000000 00111111 23468999999766666666676655321 1356
Q ss_pred EEEEecccH
Q 003367 216 RILVTTRKE 224 (826)
Q Consensus 216 ~iivTtR~~ 224 (826)
+||+|+...
T Consensus 153 rvIaTsN~~ 161 (262)
T TIGR02640 153 RVIFTSNPV 161 (262)
T ss_pred EEEEeeCCc
Confidence 888888753
No 181
>PRK12377 putative replication protein; Provisional
Probab=97.50 E-value=0.00048 Score=68.82 Aligned_cols=101 Identities=24% Similarity=0.208 Sum_probs=56.7
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCc
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKK 185 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 185 (826)
..+.|+|..|+|||+||.++++... .....++++++. ++...+-...... ..... .+. .+ .+-
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~--~~g~~v~~i~~~------~l~~~l~~~~~~~----~~~~~---~l~-~l-~~~ 164 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLL--AKGRSVIVVTVP------DVMSRLHESYDNG----QSGEK---FLQ-EL-CKV 164 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEEEHH------HHHHHHHHHHhcc----chHHH---HHH-Hh-cCC
Confidence 5789999999999999999999543 333445666543 3444443332211 01111 122 22 356
Q ss_pred eeEEeccCCCCChhhHHH--HHhhhcCC-CCCcEEEEeccc
Q 003367 186 FLLVLDDVWSGNPTKWEE--LVSTLKFG-SPESRILVTTRK 223 (826)
Q Consensus 186 ~LlVlDdv~~~~~~~~~~--l~~~~~~~-~~~s~iivTtR~ 223 (826)
=||||||+.......|+. +...+... ...--+||||.-
T Consensus 165 dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 165 DLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 699999995443344443 33333321 223347888763
No 182
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.48 E-value=5.4e-06 Score=84.78 Aligned_cols=263 Identities=18% Similarity=0.194 Sum_probs=161.2
Q ss_pred CCccEEEccCCCCccc--cchhhcCCCCCcEEeccCCCCCccc-chhh-hcccCCCeeeecC-ccccc--CCccCCCCCC
Q 003367 491 KHLRYLNLSNNDAIYE--LPEALCDLCNLQTLDVSNCGNLHAL-PQGI-AKLINLRHLINEG-TPLLY--LPKGLERLTC 563 (826)
Q Consensus 491 ~~L~~L~Ls~~~~~~~--lp~~i~~L~~L~~L~L~~~~~~~~l-p~~i-~~L~~L~~L~l~~-~~l~~--lp~~i~~L~~ 563 (826)
..|+.|.+++|.-.+. +-..-.+++|+++|++.+|..+..- -..+ ..+.+|++|++.. ..++. +......+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 4688999999975543 3344667899999999999854431 1222 4688999999986 34442 2222445677
Q ss_pred CCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCCcCCceeeEeecCCCcccccchHH
Q 003367 564 LRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNE 643 (826)
Q Consensus 564 L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~ 643 (826)
|.+|+++.+..+.. ..++. ...+++.++.+.+.++.-. ....
T Consensus 218 L~~lNlSwc~qi~~----~gv~~----------------------------~~rG~~~l~~~~~kGC~e~------~le~ 259 (483)
T KOG4341|consen 218 LKYLNLSWCPQISG----NGVQA----------------------------LQRGCKELEKLSLKGCLEL------ELEA 259 (483)
T ss_pred HHHhhhccCchhhc----CcchH----------------------------Hhccchhhhhhhhcccccc------cHHH
Confidence 88888777655322 00000 0112222222222221100 0111
Q ss_pred HhhcCCCCCCcCeEEEeccCCCCCCCCcc--cCccCCcEEEEecCCCCCCCC--CC-CCCCccceeeccccccceEeCcc
Q 003367 644 VLEALQPSPDLEKLTICDYKSKIISPSWL--MSLTELRMLNLQRCGKCEQLP--SL-GRLPSLESLVVEALSSVRRVGNE 718 (826)
Q Consensus 644 ~~~~l~~~~~L~~L~L~~~~~~~~~p~~l--~~l~~L~~L~L~~~~~~~~l~--~l-~~l~~L~~L~L~~~~~l~~~~~~ 718 (826)
+...-..++.+.++++..|.......-|. ..+..|+.|+.++|...+..+ .+ .+.++|+.|.+.+|..+...+-.
T Consensus 260 l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft 339 (483)
T KOG4341|consen 260 LLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFT 339 (483)
T ss_pred HHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhh
Confidence 11111234556667766664333211121 257899999999998766544 33 36799999999999976644433
Q ss_pred cccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCCCCCCCC-----CCCCcccCCc
Q 003367 719 FLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKLKAL-----PDHLLLTTKM 793 (826)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-----p~~l~~l~~L 793 (826)
..+ .+.+.|+.+++..+....+-.. .....+++.|+.|.++.|..++.. ..+...+..|
T Consensus 340 ~l~------------rn~~~Le~l~~e~~~~~~d~tL----~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l 403 (483)
T KOG4341|consen 340 MLG------------RNCPHLERLDLEECGLITDGTL----ASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGL 403 (483)
T ss_pred hhh------------cCChhhhhhcccccceehhhhH----hhhccCCchhccCChhhhhhhhhhhhhhhhhcccccccc
Confidence 222 3789999999998865444311 112347999999999999877654 3344556789
Q ss_pred ceEEEccccchHHH
Q 003367 794 NELTMNWCSVLKER 807 (826)
Q Consensus 794 ~~L~l~~c~~l~~~ 807 (826)
..+.+++||.+.+.
T Consensus 404 ~~lEL~n~p~i~d~ 417 (483)
T KOG4341|consen 404 EVLELDNCPLITDA 417 (483)
T ss_pred ceeeecCCCCchHH
Confidence 99999999988776
No 183
>PRK08181 transposase; Validated
Probab=97.47 E-value=0.00059 Score=69.09 Aligned_cols=100 Identities=20% Similarity=0.194 Sum_probs=54.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCce
Q 003367 107 IISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKF 186 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~ 186 (826)
-+.|+|++|+|||.||.++++... .....+.|+++ .++...+..... ....+.. +.. + .+.=
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~--~~g~~v~f~~~------~~L~~~l~~a~~-----~~~~~~~---l~~-l-~~~d 169 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALI--ENGWRVLFTRT------TDLVQKLQVARR-----ELQLESA---IAK-L-DKFD 169 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHH--HcCCceeeeeH------HHHHHHHHHHHh-----CCcHHHH---HHH-H-hcCC
Confidence 489999999999999999998432 23334556543 334444432211 1111222 222 2 2345
Q ss_pred eEEeccCCCCChhhHH--HHHhhhcCCCCCcEEEEecccH
Q 003367 187 LLVLDDVWSGNPTKWE--ELVSTLKFGSPESRILVTTRKE 224 (826)
Q Consensus 187 LlVlDdv~~~~~~~~~--~l~~~~~~~~~~s~iivTtR~~ 224 (826)
||||||+.......|. .+...+.....+..+||||...
T Consensus 170 LLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 170 LLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 9999999544333332 3444443221123688888753
No 184
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.47 E-value=0.0043 Score=64.43 Aligned_cols=167 Identities=13% Similarity=0.075 Sum_probs=101.6
Q ss_pred HHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhccccccc-------------------CCCcEEEEEeCCC
Q 003367 86 EKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDA-------------------HFDKRIWVCFSDP 146 (826)
Q Consensus 86 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~wv~~~~~ 146 (826)
..+++...+... .-...+.++|+.|+||+++|+.++...-... |-| ..|+.-..
T Consensus 11 ~~~~l~~~~~~~-----rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~- 83 (319)
T PRK06090 11 VWQNWKAGLDAG-----RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEK- 83 (319)
T ss_pred HHHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCc-
Confidence 345566665433 2455788999999999999999976432111 111 11221100
Q ss_pred CCHHHHHHHHHHHhcccchhhhhHHHHH---HHHHHH-hcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecc
Q 003367 147 VDEIRVAKAILESFRDVVSAVAAFDTLL---RHIEKS-VKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTR 222 (826)
Q Consensus 147 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~---~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR 222 (826)
....-.++++. +.+... ..+++=++|+|++...+......++..+....+++.+|++|.
T Consensus 84 -----------------~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~ 146 (319)
T PRK06090 84 -----------------EGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTH 146 (319)
T ss_pred -----------------CCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 00111223322 222111 134566899999977777788889888887777777776666
Q ss_pred cH-HHHhhc-cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHHh
Q 003367 223 KE-DVAKMM-RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTSG 288 (826)
Q Consensus 223 ~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~ 288 (826)
+. .+.... .....+.+.+++.+++.+.+.... . . .+..+++.++|.|+....+.
T Consensus 147 ~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~-~-------~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 147 NQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----I-T-------VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred ChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC----C-c-------hHHHHHHHcCCCHHHHHHHh
Confidence 54 444333 235688999999999988886531 1 0 13457889999999766553
No 185
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.45 E-value=0.00099 Score=78.51 Aligned_cols=134 Identities=16% Similarity=0.241 Sum_probs=77.6
Q ss_pred CccccchHHHHHHHHHHcCCCC---CCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSS---QEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAK 154 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 154 (826)
..++|.++.++.+...+..... ..+....++.++|+.|+|||+||+.++... +...+.++.++-.+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~---- 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKH---- 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhcc----
Confidence 4588999999998888764211 011233468899999999999999999833 2334555554422211
Q ss_pred HHHHHhcccch--hhhhHHHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCC-----------CCCcEEEEec
Q 003367 155 AILESFRDVVS--AVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFG-----------SPESRILVTT 221 (826)
Q Consensus 155 ~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~-----------~~~s~iivTt 221 (826)
.+...++.... .......+.+.++ ....-+|+||++..-+++.+..+...+..+ -..+.||+||
T Consensus 525 ~~~~lig~~~gyvg~~~~~~l~~~~~---~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Ts 601 (731)
T TIGR02639 525 TVSRLIGAPPGYVGFEQGGLLTEAVR---KHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTS 601 (731)
T ss_pred cHHHHhcCCCCCcccchhhHHHHHHH---hCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECC
Confidence 11111221111 1111122222222 233459999999777777778887777543 1234577777
Q ss_pred cc
Q 003367 222 RK 223 (826)
Q Consensus 222 R~ 223 (826)
..
T Consensus 602 n~ 603 (731)
T TIGR02639 602 NA 603 (731)
T ss_pred Cc
Confidence 53
No 186
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.45 E-value=0.00023 Score=68.32 Aligned_cols=132 Identities=20% Similarity=0.315 Sum_probs=63.9
Q ss_pred ccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCC---------CHHH
Q 003367 81 RGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPV---------DEIR 151 (826)
Q Consensus 81 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~---------~~~~ 151 (826)
..+..+.+...+.|.. ..+|.+.|++|.|||.||.+.+-+.-..+.|+.++++.-.-+. +..+
T Consensus 3 ~p~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~e 74 (205)
T PF02562_consen 3 KPKNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEE 74 (205)
T ss_dssp ---SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS------
T ss_pred cCCCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHH
Confidence 3455666677777752 3589999999999999999999766556888887776422110 0000
Q ss_pred ----HHHHHHHHhcccchhhhhHHHHHHH------HHHHhcCC---ceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEE
Q 003367 152 ----VAKAILESFRDVVSAVAAFDTLLRH------IEKSVKGK---KFLLVLDDVWSGNPTKWEELVSTLKFGSPESRIL 218 (826)
Q Consensus 152 ----~~~~i~~~l~~~~~~~~~~~~~~~~------l~~~l~~k---~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~ii 218 (826)
...-+.+.+..-. .....+.+.+. -..+++|+ ..+||+|++++-++.++..+. -..+.|||+|
T Consensus 75 K~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~il---TR~g~~skii 150 (205)
T PF02562_consen 75 KMEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMIL---TRIGEGSKII 150 (205)
T ss_dssp ---TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHH---TTB-TT-EEE
T ss_pred HHHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHH---cccCCCcEEE
Confidence 0111111111100 00111111110 00123343 469999999877666655554 4457899999
Q ss_pred EecccH
Q 003367 219 VTTRKE 224 (826)
Q Consensus 219 vTtR~~ 224 (826)
++--..
T Consensus 151 ~~GD~~ 156 (205)
T PF02562_consen 151 ITGDPS 156 (205)
T ss_dssp EEE---
T ss_pred EecCce
Confidence 987654
No 187
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.44 E-value=0.00018 Score=68.33 Aligned_cols=100 Identities=21% Similarity=0.330 Sum_probs=51.1
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCc
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKK 185 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 185 (826)
.-+.|+|..|+|||.||.++++.... +-..+.|+.+ .+++..+ ..... ....++. +.+ +. +-
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~--~g~~v~f~~~------~~L~~~l----~~~~~-~~~~~~~---~~~-l~-~~ 109 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIR--KGYSVLFITA------SDLLDEL----KQSRS-DGSYEEL---LKR-LK-RV 109 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHH--TT--EEEEEH------HHHHHHH----HCCHC-CTTHCHH---HHH-HH-TS
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhcc--CCcceeEeec------Cceeccc----ccccc-ccchhhh---cCc-cc-cc
Confidence 46999999999999999999985432 2234566653 3344333 22211 1111222 222 22 33
Q ss_pred eeEEeccCCCCChhhHHH--HHhhhcCC-CCCcEEEEecccH
Q 003367 186 FLLVLDDVWSGNPTKWEE--LVSTLKFG-SPESRILVTTRKE 224 (826)
Q Consensus 186 ~LlVlDdv~~~~~~~~~~--l~~~~~~~-~~~s~iivTtR~~ 224 (826)
=||||||+......+|.. +...+... ..+ .+||||.-.
T Consensus 110 dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 110 DLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp SCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred cEecccccceeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 488899996654444443 22222211 223 588888743
No 188
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.43 E-value=0.0064 Score=63.34 Aligned_cols=178 Identities=11% Similarity=0.111 Sum_probs=102.0
Q ss_pred HHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHH------
Q 003367 86 EKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILES------ 159 (826)
Q Consensus 86 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~------ 159 (826)
..+.+...+... .-.....++|+.|+||+++|++++...-....... .+......-+.+...
T Consensus 10 ~~~~l~~~~~~~-----rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~ 77 (325)
T PRK06871 10 TYQQITQAFQQG-----LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD-------QPCGQCHSCHLFQAGNHPDFH 77 (325)
T ss_pred HHHHHHHHHHcC-----CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCEE
Confidence 345566666433 23456779999999999999999874322111100 000000111111000
Q ss_pred -h---cccchhhhhHHHHHHHHHHH-hcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccH-HHHhhc-cc
Q 003367 160 -F---RDVVSAVAAFDTLLRHIEKS-VKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKE-DVAKMM-RT 232 (826)
Q Consensus 160 -l---~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~-~v~~~~-~~ 232 (826)
+ .+..-..+.+.++.+.+... ..+++=++|+|++...+......++..+....+++.+|++|.+. .+.... ..
T Consensus 78 ~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SR 157 (325)
T PRK06871 78 ILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSR 157 (325)
T ss_pred EEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhh
Confidence 0 00001122222222222221 13566788999997777778888988888877788777777654 343332 22
Q ss_pred cceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhH
Q 003367 233 TSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAA 284 (826)
Q Consensus 233 ~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal 284 (826)
...+.+.++++++..+.+..... . + ...+...+..++|.|+.+
T Consensus 158 C~~~~~~~~~~~~~~~~L~~~~~--~---~----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 158 CQTWLIHPPEEQQALDWLQAQSS--A---E----ISEILTALRINYGRPLLA 200 (325)
T ss_pred ceEEeCCCCCHHHHHHHHHHHhc--c---C----hHHHHHHHHHcCCCHHHH
Confidence 56899999999999988876531 1 1 122456788899999643
No 189
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.43 E-value=0.0022 Score=61.80 Aligned_cols=178 Identities=19% Similarity=0.208 Sum_probs=100.3
Q ss_pred CccccchHHHHH---HHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHH
Q 003367 78 SKVRGRDEEKKT---IIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAK 154 (826)
Q Consensus 78 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 154 (826)
++++|.++...+ |++.|..+..-+.=.++-|..+|++|.|||.+|+++++..+ ..| +-|. ..+
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k--vp~---l~vk---------at~ 186 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK--VPL---LLVK---------ATE 186 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC--Cce---EEec---------hHH
Confidence 468998877654 77778766543444578899999999999999999999443 222 1121 112
Q ss_pred HHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCC------------CChhhHHHHHhhhcC--CCCCcEEEEe
Q 003367 155 AILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWS------------GNPTKWEELVSTLKF--GSPESRILVT 220 (826)
Q Consensus 155 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~------------~~~~~~~~l~~~~~~--~~~~s~iivT 220 (826)
-|-+..+. ...++.+...+.-+.-++++.+|.++- +-.+...+++..+.. .+.|...|..
T Consensus 187 liGehVGd------gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaa 260 (368)
T COG1223 187 LIGEHVGD------GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAA 260 (368)
T ss_pred HHHHHhhh------HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEee
Confidence 22222221 112222333333356789999998732 111222333433332 3456566666
Q ss_pred cccHHHHhhc---cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCC
Q 003367 221 TRKEDVAKMM---RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGL 280 (826)
Q Consensus 221 tR~~~v~~~~---~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~gl 280 (826)
|....+.... .-..-++..--+++|-.+++..++-.-.-+. ..-.+.++++.+|.
T Consensus 261 TN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv-----~~~~~~~~~~t~g~ 318 (368)
T COG1223 261 TNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV-----DADLRYLAAKTKGM 318 (368)
T ss_pred cCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc-----ccCHHHHHHHhCCC
Confidence 6666554321 1244677777788888888888764322211 11134466666654
No 190
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.42 E-value=0.00068 Score=81.09 Aligned_cols=136 Identities=19% Similarity=0.276 Sum_probs=79.4
Q ss_pred CccccchHHHHHHHHHHcCCCC---CCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSS---QEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAK 154 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 154 (826)
..++|.+..++.+...+..... ..+....++.++|+.|+|||++|+.++.... ..-...+.++++.-.....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~--~~~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLF--DDEDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhc--CCCCcEEEEechhhcccch---
Confidence 4589999999999998875321 0112245788999999999999999998321 1122344455544222111
Q ss_pred HHHHHhcccchhhh---hHHHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCCC-----------CCcEEEEe
Q 003367 155 AILESFRDVVSAVA---AFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGS-----------PESRILVT 220 (826)
Q Consensus 155 ~i~~~l~~~~~~~~---~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~-----------~~s~iivT 220 (826)
...+.+..+... ....+...++ +....+|+||++..-++..+..+...+..+. ..+-||+|
T Consensus 640 --~~~l~g~~~g~~g~~~~g~l~~~v~---~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~T 714 (852)
T TIGR03346 640 --VARLIGAPPGYVGYEEGGQLTEAVR---RKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMT 714 (852)
T ss_pred --HHHhcCCCCCccCcccccHHHHHHH---cCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEe
Confidence 111211111111 1112222222 2233499999997777888888888775441 33457777
Q ss_pred ccc
Q 003367 221 TRK 223 (826)
Q Consensus 221 tR~ 223 (826)
|.-
T Consensus 715 Sn~ 717 (852)
T TIGR03346 715 SNL 717 (852)
T ss_pred CCc
Confidence 764
No 191
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.42 E-value=9.9e-06 Score=69.83 Aligned_cols=101 Identities=24% Similarity=0.293 Sum_probs=65.6
Q ss_pred CcEEeccccccccccccccccc---cccCCCCccEEEccCCCCccccchhhcC-CCCCcEEeccCCCCCcccchhhhccc
Q 003367 464 LRTLCLRCHERHFCLSIARLPR---NIKKLKHLRYLNLSNNDAIYELPEALCD-LCNLQTLDVSNCGNLHALPQGIAKLI 539 (826)
Q Consensus 464 Lr~L~L~~~~~~~~~~~~~lp~---~i~~l~~L~~L~Ls~~~~~~~lp~~i~~-L~~L~~L~L~~~~~~~~lp~~i~~L~ 539 (826)
+..++|+ .| .+..+++ .+.+..+|+..+|++|. ...+|+.|.. .+-+++|++++|. +..+|..+..++
T Consensus 29 ~h~ldLs-----sc-~lm~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~ 100 (177)
T KOG4579|consen 29 LHFLDLS-----SC-QLMYIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMP 100 (177)
T ss_pred hhhcccc-----cc-hhhHHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhH
Confidence 4455666 44 3333333 34455666667777777 6667765543 3467777777777 666777777777
Q ss_pred CCCeeeecCcccccCCccCCCCCCCCcCCceee
Q 003367 540 NLRHLINEGTPLLYLPKGLERLTCLRTLSEFTV 572 (826)
Q Consensus 540 ~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~ 572 (826)
.|+.|+++.|++...|..+..|.+|-.|+.-.+
T Consensus 101 aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 101 ALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred HhhhcccccCccccchHHHHHHHhHHHhcCCCC
Confidence 788888777777777777666666666654443
No 192
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.41 E-value=6.8e-06 Score=89.50 Aligned_cols=110 Identities=25% Similarity=0.245 Sum_probs=71.7
Q ss_pred chhhhccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchh-hcCCCCCcEEeccCCCCCcccc
Q 003367 454 LPSLFDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEA-LCDLCNLQTLDVSNCGNLHALP 532 (826)
Q Consensus 454 ~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~-i~~L~~L~~L~L~~~~~~~~lp 532 (826)
+..++.-++.|+.|||+.|.+..+ ..+..|++|++|||++|. +..+|.. ...+ .|+.|++++|. +..+
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v-------~~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lrnN~-l~tL- 247 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKV-------DNLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLRNNA-LTTL- 247 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhh-------HHHHhcccccccccccch-hccccccchhhh-hheeeeecccH-HHhh-
Confidence 345666677788888885554433 356777888888888887 7777742 1223 38888888877 5555
Q ss_pred hhhhcccCCCeeeecCcccccCCc--cCCCCCCCCcCCceeeCc
Q 003367 533 QGIAKLINLRHLINEGTPLLYLPK--GLERLTCLRTLSEFTVSD 574 (826)
Q Consensus 533 ~~i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~~~~~~~ 574 (826)
.++.+|.+|+.||++.|-+..... -++.|..|..|.+-+|..
T Consensus 248 ~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 248 RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 467788888888888776653321 144556666666665543
No 193
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.40 E-value=0.0013 Score=78.38 Aligned_cols=137 Identities=18% Similarity=0.287 Sum_probs=76.2
Q ss_pred ccccchHHHHHHHHHHcCCCC---CCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHH
Q 003367 79 KVRGRDEEKKTIIDLLLGSSS---QEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKA 155 (826)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 155 (826)
.++|.+..++.+...+..... ..+....++.++|+.|+|||++|+.+++... ..-...+.++++.-.. ..
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~--~~~~~~i~id~se~~~-----~~ 641 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF--DSDDAMVRIDMSEFME-----KH 641 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh--cCCCcEEEEEhHHhhh-----hh
Confidence 588999999998888764321 0112234788999999999999999997321 1112334444433211 11
Q ss_pred HHHHhcccchhhhhHHHHHHHHHHHhc-CCceeEEeccCCCCChhhHHHHHhhhcCCC-----------CCcEEEEeccc
Q 003367 156 ILESFRDVVSAVAAFDTLLRHIEKSVK-GKKFLLVLDDVWSGNPTKWEELVSTLKFGS-----------PESRILVTTRK 223 (826)
Q Consensus 156 i~~~l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~-----------~~s~iivTtR~ 223 (826)
....+.+..+.....+. ...+.+.++ ...-+|+||++..-++..+..+...+..+. ..+.||+||..
T Consensus 642 ~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~ 720 (857)
T PRK10865 642 SVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL 720 (857)
T ss_pred hHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCc
Confidence 12222221111111111 011222222 233699999997667777887877765431 22347888875
No 194
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.39 E-value=0.00096 Score=66.49 Aligned_cols=103 Identities=17% Similarity=0.244 Sum_probs=58.0
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCC
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGK 184 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 184 (826)
...+.++|.+|+|||+||.++++... ..-..+++++ ..++...+-...... ....+. +.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~--~~g~~v~~it------~~~l~~~l~~~~~~~---~~~~~~----~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELL--LRGKSVLIIT------VADIMSAMKDTFSNS---ETSEEQ----LLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEE------HHHHHHHHHHHHhhc---cccHHH----HHHHhc-c
Confidence 35789999999999999999999543 2233455654 334444443333210 111112 222333 3
Q ss_pred ceeEEeccCCCCChhhHHH--HHhhhcC-CCCCcEEEEeccc
Q 003367 185 KFLLVLDDVWSGNPTKWEE--LVSTLKF-GSPESRILVTTRK 223 (826)
Q Consensus 185 ~~LlVlDdv~~~~~~~~~~--l~~~~~~-~~~~s~iivTtR~ 223 (826)
.=+|||||+.......|+. +...+.. ....-.+||||.-
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 4488999996655556664 3333322 1223457788764
No 195
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.39 E-value=0.00079 Score=69.86 Aligned_cols=122 Identities=19% Similarity=0.279 Sum_probs=70.8
Q ss_pred cchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhc
Q 003367 82 GRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFR 161 (826)
Q Consensus 82 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 161 (826)
+|....+...+++..-.. ....+-+.|+|..|+|||.||.++++... ..-..+.++++. .++..+.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~~v~~~~~~------~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANELA--KKGVSSTLLHFP------EFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCEEEEEHH------HHHHHHHHHHh
Confidence 455555555556543221 11345799999999999999999999643 222335566543 34455544432
Q ss_pred ccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCChhhHHH--HHhhh-cCC-CCCcEEEEeccc
Q 003367 162 DVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEE--LVSTL-KFG-SPESRILVTTRK 223 (826)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~--l~~~~-~~~-~~~s~iivTtR~ 223 (826)
.. ...+ .+.. + .+-=||||||+..+....|.. +...+ ... ..+-.+|+||.-
T Consensus 205 ~~-----~~~~---~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 DG-----SVKE---KIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred cC-----cHHH---HHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 11 1122 2222 2 245599999997666667764 44443 221 245578888873
No 196
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.37 E-value=0.016 Score=61.30 Aligned_cols=200 Identities=13% Similarity=0.132 Sum_probs=122.7
Q ss_pred chHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHH-HHHhcccccccCCCcEEEEEeCC---CCCHHHHHHHHHH
Q 003367 83 RDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLA-RLVFNEVKVDAHFDKRIWVCFSD---PVDEIRVAKAILE 158 (826)
Q Consensus 83 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~ 158 (826)
|.+..++|..||.+..+ ..|.|.|+-|.||+.|+ .++..+.+ .+..+++.+ ..+...+.+.++.
T Consensus 1 R~e~~~~L~~wL~e~~~------TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPN------TFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCCC------eEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHH
Confidence 67788999999987643 58999999999999999 77766422 266676654 2345566667776
Q ss_pred Hhcccc----------------------------hhhhhHHHHH----HHHHHH-------------hc---------CC
Q 003367 159 SFRDVV----------------------------SAVAAFDTLL----RHIEKS-------------VK---------GK 184 (826)
Q Consensus 159 ~l~~~~----------------------------~~~~~~~~~~----~~l~~~-------------l~---------~k 184 (826)
++|-.+ +....+..+. ..+++. ++ .+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 664210 0111111111 112110 00 12
Q ss_pred ceeEEeccCCCCC---------hhhHHHHHhhhcCCCCCcEEEEecccHHHHhh----c--cccceEEccCCCCchhHHH
Q 003367 185 KFLLVLDDVWSGN---------PTKWEELVSTLKFGSPESRILVTTRKEDVAKM----M--RTTSMILLAKLPDNDCWSL 249 (826)
Q Consensus 185 ~~LlVlDdv~~~~---------~~~~~~l~~~~~~~~~~s~iivTtR~~~v~~~----~--~~~~~~~l~~L~~~~~~~l 249 (826)
+=+||+||.-... ..+|...+. ..+=.+||++|-+...... + ..-+.+.+...+.+.|.++
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv----~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLV----QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHH----hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 5689999984321 123333222 1234588888877654443 2 2345788999999999999
Q ss_pred HHHhhhcCCCc------------cc----chhhHHHHHHHHHhcCCCchhHHHHhhhhcCCcCHH
Q 003367 250 FSQIAFSGRTT------------EE----CQKLTDIGRMIADKCNGLPLAAKTSGSLLSLKTTME 298 (826)
Q Consensus 250 f~~~a~~~~~~------------~~----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~ 298 (826)
...+....... .. .....+-....++..||=-.-|..+++.++...+++
T Consensus 225 V~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 225 VLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred HHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 98886443110 00 012344456688889999999999999888776544
No 197
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.37 E-value=0.00047 Score=67.78 Aligned_cols=35 Identities=29% Similarity=0.456 Sum_probs=28.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEe
Q 003367 107 IISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCF 143 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 143 (826)
.++|+|..|.||||++..+.. .....|+.+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 578999999999999999998 45578877766643
No 198
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=2.9e-05 Score=75.87 Aligned_cols=44 Identities=20% Similarity=0.378 Sum_probs=25.4
Q ss_pred CCCccceeeccccccccccccccccccCcCCCCccceeeecCCCCCCCC
Q 003367 735 VFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKLKAL 783 (826)
Q Consensus 735 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l 783 (826)
.+|.+-.|.|..+ ++.+|.. .+.+..||+|..|.++++|....+
T Consensus 222 ~~p~~~~LnL~~~-~idswas----vD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 222 PFPSLSCLNLGAN-NIDSWAS----VDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred CCCcchhhhhccc-ccccHHH----HHHHcCCchhheeeccCCcccccc
Confidence 4555555555554 4555544 344556677777777766665544
No 199
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.35 E-value=0.001 Score=77.95 Aligned_cols=166 Identities=17% Similarity=0.252 Sum_probs=89.8
Q ss_pred CCccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHH
Q 003367 77 VSKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAI 156 (826)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 156 (826)
+.+.+|.++.+++|.+++......+.....++.++|++|+||||+|+.++... ...| +-+.++...+...+...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l--~~~~---~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT--GRKY---VRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh--CCCE---EEEEcCCCCCHHHhccch
Confidence 34589999999999988874221112244689999999999999999999732 2222 223444433333222211
Q ss_pred HHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCChhh----HHHHHhhhcCC---------------CCCcEE
Q 003367 157 LESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTK----WEELVSTLKFG---------------SPESRI 217 (826)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~----~~~l~~~~~~~---------------~~~s~i 217 (826)
....+... ..+.+.+... ....-+++||.+..-.... .+.+...+... -...-+
T Consensus 396 ~~~~g~~~------G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 396 RTYIGSMP------GKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred hccCCCCC------cHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 11111110 1222223221 2234578999995432221 34555544321 133444
Q ss_pred EEecccHHHHhh-ccccceEEccCCCCchhHHHHHHhh
Q 003367 218 LVTTRKEDVAKM-MRTTSMILLAKLPDNDCWSLFSQIA 254 (826)
Q Consensus 218 ivTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~a 254 (826)
|.|+....+... ..-..++++.+++.+|-.++..++.
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 555544322211 1223478888888888777776654
No 200
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.35 E-value=0.005 Score=68.02 Aligned_cols=204 Identities=16% Similarity=0.140 Sum_probs=118.5
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccc---cc---cCCCcEEEEEeCCCCCHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVK---VD---AHFDKRIWVCFSDPVDEIR 151 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~---~~f~~~~wv~~~~~~~~~~ 151 (826)
..+-+||.|..+|..++...-.. ...-+.+.|.|.+|.|||..+..|.+..+ .+ ..|+ .+.|+.-.-....+
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPRE 473 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHH
Confidence 34679999999999888654332 22345899999999999999999988432 11 2343 34556666677899
Q ss_pred HHHHHHHHhcccchhhhhHHHHHHHHHHHh-----cCCceeEEeccCCCCChhhHHHHHhhhcC-CCCCcEEEEecccHH
Q 003367 152 VAKAILESFRDVVSAVAAFDTLLRHIEKSV-----KGKKFLLVLDDVWSGNPTKWEELVSTLKF-GSPESRILVTTRKED 225 (826)
Q Consensus 152 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~~~~-~~~~s~iivTtR~~~ 225 (826)
++..|...+.+... ......+.+..++ +.+..+|++|++..--...-+-+...+.| ..++||++|-+=...
T Consensus 474 ~Y~~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNT 550 (767)
T KOG1514|consen 474 IYEKIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANT 550 (767)
T ss_pred HHHHHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccc
Confidence 99999999976432 2233334444444 24678999999822101112334445666 467888776543211
Q ss_pred -----------HHhhccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHHh
Q 003367 226 -----------VAKMMRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTSG 288 (826)
Q Consensus 226 -----------v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~ 288 (826)
+...++ ...+.+.+-+.++-.++...+..+. ........+-++++|+...|-.-.|+.+.-
T Consensus 551 mdlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~ 622 (767)
T KOG1514|consen 551 MDLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICR 622 (767)
T ss_pred ccCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHH
Confidence 111111 2345566667666666666554322 112222333445555555555555554443
No 201
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.35 E-value=0.00097 Score=72.02 Aligned_cols=152 Identities=20% Similarity=0.311 Sum_probs=84.0
Q ss_pred ccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHH-H
Q 003367 79 KVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAI-L 157 (826)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i-~ 157 (826)
.++||++.++.+...+....+ |.|.|++|+|||++|+.++........|... -+.++. ..+++..+ +
T Consensus 21 ~i~gre~vI~lll~aalag~h--------VLL~GpPGTGKT~LAraLa~~~~~~~~F~~~-~~~ftt---p~DLfG~l~i 88 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGES--------VFLLGPPGIAKSLIARRLKFAFQNARAFEYL-MTRFST---PEEVFGPLSI 88 (498)
T ss_pred hccCcHHHHHHHHHHHccCCC--------EEEECCCChhHHHHHHHHHHHhcccCcceee-eeeecC---cHHhcCcHHH
Confidence 489999999999998876543 8999999999999999999843222233211 111111 12221111 0
Q ss_pred HHhcccchhhhhHHHHHHHHHHHhcC---CceeEEeccCCCCChhhHHHHHhhhcCCC---------CCcEEEEecccHH
Q 003367 158 ESFRDVVSAVAAFDTLLRHIEKSVKG---KKFLLVLDDVWSGNPTKWEELVSTLKFGS---------PESRILVTTRKED 225 (826)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~l~~~l~~---k~~LlVlDdv~~~~~~~~~~l~~~~~~~~---------~~s~iivTtR~~~ 225 (826)
..... . ..+.+...+ ..-++++|+++...+.....+...+.... -..++++++.++-
T Consensus 89 ~~~~~----~-------g~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~L 157 (498)
T PRK13531 89 QALKD----E-------GRYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNEL 157 (498)
T ss_pred hhhhh----c-------CchhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCC
Confidence 10000 0 001111111 12289999999888777777777763211 1225555554432
Q ss_pred HH------hhc-cccceEEccCCCCchh-HHHHHHh
Q 003367 226 VA------KMM-RTTSMILLAKLPDNDC-WSLFSQI 253 (826)
Q Consensus 226 v~------~~~-~~~~~~~l~~L~~~~~-~~lf~~~ 253 (826)
.. ..+ .-.-.+.++++++++. .+++...
T Consensus 158 PE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 158 PEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred cccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 11 111 1123577888976544 7777653
No 202
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.35 E-value=0.00075 Score=80.12 Aligned_cols=136 Identities=18% Similarity=0.247 Sum_probs=78.7
Q ss_pred CccccchHHHHHHHHHHcCCCC---CCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSS---QEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAK 154 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 154 (826)
..++|.++.++.+.+.+..... ..+....++.++|+.|+|||.+|++++...- ......+-++++.-.+ .
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~--~~~~~~~~~dmse~~~-----~ 638 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY--GGEQNLITINMSEFQE-----A 638 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh--CCCcceEEEeHHHhhh-----h
Confidence 4589999999999988854211 1123445789999999999999999987431 1112223333332111 1
Q ss_pred HHHHHhcccchhh---hhHHHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCCC-----------CCcEEEEe
Q 003367 155 AILESFRDVVSAV---AAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGS-----------PESRILVT 220 (826)
Q Consensus 155 ~i~~~l~~~~~~~---~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~-----------~~s~iivT 220 (826)
.-...+.+..+.. .....+...++ +...-+|+||++..-++..++.+...+..+. ..+-||+|
T Consensus 639 ~~~~~l~g~~~gyvg~~~~g~L~~~v~---~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEGGVLTEAVR---RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred hhhccccCCCCCcccccccchHHHHHH---hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 1111222211111 11112333333 2455799999997767777777777776543 45667777
Q ss_pred ccc
Q 003367 221 TRK 223 (826)
Q Consensus 221 tR~ 223 (826)
|.-
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 764
No 203
>PRK04132 replication factor C small subunit; Provisional
Probab=97.34 E-value=0.0037 Score=72.87 Aligned_cols=152 Identities=14% Similarity=0.048 Sum_probs=96.9
Q ss_pred cCCCcHHHHHHHHhcccccccCC-CcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEec
Q 003367 113 TGGVGKTTLARLVFNEVKVDAHF-DKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLD 191 (826)
Q Consensus 113 ~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlD 191 (826)
+.++||||+|.+++++.-. ..+ ..++.+++++......+. +++..+....+ .-..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l~g-~~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~--------------~~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALARELFG-ENWRHNFLELNASDERGINVIR-EKVKEFARTKP--------------IGGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhhhc-ccccCeEEEEeCCCcccHHHHH-HHHHHHHhcCC--------------cCCCCCEEEEEE
Confidence 7789999999999985321 122 235667777654444332 33222211000 001245799999
Q ss_pred cCCCCChhhHHHHHhhhcCCCCCcEEEEecccH-HHHhhcc-ccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHH
Q 003367 192 DVWSGNPTKWEELVSTLKFGSPESRILVTTRKE-DVAKMMR-TTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDI 269 (826)
Q Consensus 192 dv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~-~v~~~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~ 269 (826)
+++.-+......+...+.......++|+++.+. .+...+. ....+.+.+++.++..+.+...+.......+ .+.
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~----~e~ 713 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT----EEG 713 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC----HHH
Confidence 998777778888888887766677777766654 3332222 2568999999999988888776543222111 456
Q ss_pred HHHHHHhcCCCchhH
Q 003367 270 GRMIADKCNGLPLAA 284 (826)
Q Consensus 270 ~~~i~~~~~glPLal 284 (826)
...|++.++|.+..+
T Consensus 714 L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 714 LQAILYIAEGDMRRA 728 (846)
T ss_pred HHHHHHHcCCCHHHH
Confidence 788999999988543
No 204
>PRK08118 topology modulation protein; Reviewed
Probab=97.33 E-value=0.00011 Score=69.24 Aligned_cols=34 Identities=38% Similarity=0.760 Sum_probs=27.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcccccc-cCCCcEEE
Q 003367 107 IISILGTGGVGKTTLARLVFNEVKVD-AHFDKRIW 140 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~w 140 (826)
.|.|+|++|+||||||+++++..... .+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999999865444 45676765
No 205
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.33 E-value=0.00067 Score=68.45 Aligned_cols=80 Identities=25% Similarity=0.284 Sum_probs=48.0
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCc
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKK 185 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 185 (826)
.-+.++|.+|+|||.||.++.+... ..--.+.++++ .++..++...... ......+.+.+. +-
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~--~~g~sv~f~~~------~el~~~Lk~~~~~--------~~~~~~l~~~l~-~~ 168 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELL--KAGISVLFITA------PDLLSKLKAAFDE--------GRLEEKLLRELK-KV 168 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEEEH------HHHHHHHHHHHhc--------CchHHHHHHHhh-cC
Confidence 3589999999999999999999654 32234556653 3445555444432 111122222221 23
Q ss_pred eeEEeccCCCCChhhHH
Q 003367 186 FLLVLDDVWSGNPTKWE 202 (826)
Q Consensus 186 ~LlVlDdv~~~~~~~~~ 202 (826)
=||||||+.......|.
T Consensus 169 dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 169 DLLIIDDIGYEPFSQEE 185 (254)
T ss_pred CEEEEecccCccCCHHH
Confidence 38999999665555555
No 206
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0032 Score=66.84 Aligned_cols=150 Identities=21% Similarity=0.257 Sum_probs=86.6
Q ss_pred CCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHh
Q 003367 102 KMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSV 181 (826)
Q Consensus 102 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 181 (826)
...+..|.+.|++|+|||+||.+++.. ..|..+--+ .+.+. ++. +.......+...+...-
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKii---Spe~m----------iG~--sEsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKII---SPEDM----------IGL--SESAKCAHIKKIFEDAY 595 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEe---ChHHc----------cCc--cHHHHHHHHHHHHHHhh
Confidence 346777889999999999999999973 345533222 21111 111 11122233334444444
Q ss_pred cCCceeEEeccCCCCChhhH------------HHHHhhhcCC-CCCcE--EEEecccHHHHhhccc----cceEEccCCC
Q 003367 182 KGKKFLLVLDDVWSGNPTKW------------EELVSTLKFG-SPESR--ILVTTRKEDVAKMMRT----TSMILLAKLP 242 (826)
Q Consensus 182 ~~k~~LlVlDdv~~~~~~~~------------~~l~~~~~~~-~~~s~--iivTtR~~~v~~~~~~----~~~~~l~~L~ 242 (826)
+..-..||+||+ +..-+| ..+.-.+... .+|-| |+-||-...+...|+. ...|.++.++
T Consensus 596 kS~lsiivvDdi--ErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 596 KSPLSIIVVDDI--ERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred cCcceEEEEcch--hhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 667789999999 322222 2333333332 23334 4557777778877654 4578899998
Q ss_pred C-chhHHHHHHhhhcCCCcccchhhHHHHHHHHHhc
Q 003367 243 D-NDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKC 277 (826)
Q Consensus 243 ~-~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~ 277 (826)
. ++..+.++..- ...+.....++++...+|
T Consensus 674 ~~~~~~~vl~~~n-----~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 674 TGEQLLEVLEELN-----IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred chHHHHHHHHHcc-----CCCcchhHHHHHHHhccc
Confidence 7 77777776642 112223455666666666
No 207
>PRK09183 transposase/IS protein; Provisional
Probab=97.32 E-value=0.00079 Score=68.33 Aligned_cols=100 Identities=19% Similarity=0.134 Sum_probs=52.2
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCc
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKK 185 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 185 (826)
..|.|+|+.|+|||+||.+++..... .-..+.++. ..++...+...... ..+...+.+. ..+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~--~G~~v~~~~------~~~l~~~l~~a~~~--------~~~~~~~~~~-~~~~ 165 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVR--AGIKVRFTT------AADLLLQLSTAQRQ--------GRYKTTLQRG-VMAP 165 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEe------HHHHHHHHHHHHHC--------CcHHHHHHHH-hcCC
Confidence 46889999999999999999874321 222333443 22333333221110 0111222222 2345
Q ss_pred eeEEeccCCCCChhhHH--HHHhhhcC-CCCCcEEEEeccc
Q 003367 186 FLLVLDDVWSGNPTKWE--ELVSTLKF-GSPESRILVTTRK 223 (826)
Q Consensus 186 ~LlVlDdv~~~~~~~~~--~l~~~~~~-~~~~s~iivTtR~ 223 (826)
-++|+||+.......+. .+...+.. ...++ +|+||..
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 69999999653333232 34443332 12344 8888874
No 208
>PRK06526 transposase; Provisional
Probab=97.30 E-value=0.00057 Score=68.89 Aligned_cols=100 Identities=18% Similarity=0.142 Sum_probs=52.2
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCc
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKK 185 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 185 (826)
.-+.|+|++|+|||+||.++....... .+ .+.|+ +..++...+...... ......+.+. .+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~-g~-~v~f~------t~~~l~~~l~~~~~~--------~~~~~~l~~l--~~~ 160 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQA-GH-RVLFA------TAAQWVARLAAAHHA--------GRLQAELVKL--GRY 160 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHC-CC-chhhh------hHHHHHHHHHHHHhc--------CcHHHHHHHh--ccC
Confidence 458999999999999999998743221 22 23333 223344433322110 1112223222 234
Q ss_pred eeEEeccCCCCChhhHH--HHHhhhcC-CCCCcEEEEecccH
Q 003367 186 FLLVLDDVWSGNPTKWE--ELVSTLKF-GSPESRILVTTRKE 224 (826)
Q Consensus 186 ~LlVlDdv~~~~~~~~~--~l~~~~~~-~~~~s~iivTtR~~ 224 (826)
-+||+||+.......+. .+...+.. ...+ .+|+||..+
T Consensus 161 dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~-s~IitSn~~ 201 (254)
T PRK06526 161 PLLIVDEVGYIPFEPEAANLFFQLVSSRYERA-SLIVTSNKP 201 (254)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHHHHhcC-CEEEEcCCC
Confidence 58999999543222222 23333322 1234 488888754
No 209
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0097 Score=60.63 Aligned_cols=187 Identities=17% Similarity=0.198 Sum_probs=105.0
Q ss_pred ccccchHHHHHHHHHHcCCCCC-------CCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHH
Q 003367 79 KVRGRDEEKKTIIDLLLGSSSQ-------EKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIR 151 (826)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 151 (826)
++-|-++.+++|.+...-+-.+ +-..++=|.+||++|.|||-||++|+++. ...| +.+..
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T--~AtF-----Irvvg------ 218 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT--DATF-----IRVVG------ 218 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc--CceE-----EEecc------
Confidence 4778999999998877543211 22356779999999999999999999943 2333 33322
Q ss_pred HHHHHHHHhcccchhhhhHHHHHHHHHHHh-cCCceeEEeccCCC-----------CChh---hHHHHHhhhcCC--CCC
Q 003367 152 VAKAILESFRDVVSAVAAFDTLLRHIEKSV-KGKKFLLVLDDVWS-----------GNPT---KWEELVSTLKFG--SPE 214 (826)
Q Consensus 152 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~-----------~~~~---~~~~l~~~~~~~--~~~ 214 (826)
.++++..-+ +...++..+.+.- ...+..|.+|.++. .+.+ ..-+++..+..+ ...
T Consensus 219 --SElVqKYiG------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 219 --SELVQKYIG------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred --HHHHHHHhc------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 122222211 1123333333333 35689999999832 0111 122233333333 245
Q ss_pred cEEEEecccHHHHhh-----ccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCch----hHH
Q 003367 215 SRILVTTRKEDVAKM-----MRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPL----AAK 285 (826)
Q Consensus 215 s~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPL----al~ 285 (826)
-|||.+|...++... ..-++.+++..-+.+.-.++|.-++..-.- .+.-+++. +++.|.|.-= |+.
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l-~~dvd~e~----la~~~~g~sGAdlkaic 365 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNL-ADDVDLEL----LARLTEGFSGADLKAIC 365 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccC-ccCcCHHH----HHHhcCCCchHHHHHHH
Confidence 688988876554332 233678888855555556677766543332 23334444 5666666543 444
Q ss_pred HHhhhh
Q 003367 286 TSGSLL 291 (826)
Q Consensus 286 ~~~~~l 291 (826)
+=|+++
T Consensus 366 tEAGm~ 371 (406)
T COG1222 366 TEAGMF 371 (406)
T ss_pred HHHhHH
Confidence 555554
No 210
>PRK06921 hypothetical protein; Provisional
Probab=97.27 E-value=0.0014 Score=66.79 Aligned_cols=99 Identities=24% Similarity=0.374 Sum_probs=54.7
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccC-CCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcC
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAH-FDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKG 183 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 183 (826)
...+.++|..|+|||+||.++++... .. ...++|++.. +++..+...+ +...+.+.. + .
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~--~~~g~~v~y~~~~------~l~~~l~~~~----------~~~~~~~~~-~-~ 176 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELM--RKKGVPVLYFPFV------EGFGDLKDDF----------DLLEAKLNR-M-K 176 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHh--hhcCceEEEEEHH------HHHHHHHHHH----------HHHHHHHHH-h-c
Confidence 35689999999999999999999543 32 3445666642 2333332211 111112222 2 2
Q ss_pred CceeEEeccCCC-----CChhhHHH--HHhhhcCC-CCCcEEEEeccc
Q 003367 184 KKFLLVLDDVWS-----GNPTKWEE--LVSTLKFG-SPESRILVTTRK 223 (826)
Q Consensus 184 k~~LlVlDdv~~-----~~~~~~~~--l~~~~~~~-~~~s~iivTtR~ 223 (826)
+-=||||||+.. +...+|.. +...+... ..+..+||||..
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 445999999932 22334443 44333321 234458888864
No 211
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.26 E-value=0.0011 Score=78.60 Aligned_cols=52 Identities=29% Similarity=0.468 Sum_probs=38.7
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhccc
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
.+++|.++.+++|.+++......+....+++.++|++|+|||++|+.+++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3488999999999887643211112233589999999999999999999843
No 212
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.26 E-value=0.0021 Score=68.45 Aligned_cols=142 Identities=18% Similarity=0.192 Sum_probs=86.0
Q ss_pred ccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhccccccc-------------------CCCcEE
Q 003367 79 KVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDA-------------------HFDKRI 139 (826)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~ 139 (826)
.++|-+....++..+...... ....+.++|+.|+||||+|.++++..-... .+..+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~----~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGR----LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcCC----CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 467778888888888865431 333599999999999999999998543111 112344
Q ss_pred EEEeCCCCC---HHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcE
Q 003367 140 WVCFSDPVD---EIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESR 216 (826)
Q Consensus 140 wv~~~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~ 216 (826)
.+..+.... ..+..+++.+...... ..++.-++|+|++...+.+.-..+...+......+.
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESP----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCC----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 444444333 2222333332222110 035678999999966566666667777777777888
Q ss_pred EEEecccH-HHHhhccc-cceEEccC
Q 003367 217 ILVTTRKE-DVAKMMRT-TSMILLAK 240 (826)
Q Consensus 217 iivTtR~~-~v~~~~~~-~~~~~l~~ 240 (826)
+|++|... .+...... ...+.+.+
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCC
Confidence 88888743 33332222 34566665
No 213
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.25 E-value=0.016 Score=61.78 Aligned_cols=46 Identities=22% Similarity=0.361 Sum_probs=35.7
Q ss_pred chHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhccccc
Q 003367 83 RDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKV 131 (826)
Q Consensus 83 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 131 (826)
|+.-.+.|.+.+..... ....+|+|.|.=|+||||+.+.+.+..+.
T Consensus 1 ~~~~a~~la~~I~~~~~---~~~~~IgL~G~WGsGKSs~l~~l~~~L~~ 46 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDS---DDPFVIGLYGEWGSGKSSFLNMLKEELKE 46 (325)
T ss_pred ChHHHHHHHHHHhccCC---CCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 34556777888876532 36789999999999999999999885543
No 214
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=9.6e-05 Score=72.34 Aligned_cols=88 Identities=24% Similarity=0.201 Sum_probs=56.7
Q ss_pred ccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCc---cccchhhcCCCCCcEEeccCCCCC-cccchh
Q 003367 459 DRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAI---YELPEALCDLCNLQTLDVSNCGNL-HALPQG 534 (826)
Q Consensus 459 ~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~---~~lp~~i~~L~~L~~L~L~~~~~~-~~lp~~ 534 (826)
..++.++.|||.+|.++....+. .-+.+|++|++|+|+.|... +.+| -.+.+|++|-|.++.+. ......
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~---~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~ 141 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIG---AILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSS 141 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHH---HHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhhh
Confidence 45677888888877665443332 33567888888888888732 2333 24568888888877642 223345
Q ss_pred hhcccCCCeeeecCcccc
Q 003367 535 IAKLINLRHLINEGTPLL 552 (826)
Q Consensus 535 i~~L~~L~~L~l~~~~l~ 552 (826)
+..++.++.|+++.|++.
T Consensus 142 l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 142 LDDLPKVTELHMSDNSLR 159 (418)
T ss_pred hhcchhhhhhhhccchhh
Confidence 567777788877776554
No 215
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.24 E-value=0.012 Score=62.01 Aligned_cols=183 Identities=13% Similarity=0.058 Sum_probs=101.6
Q ss_pred HHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCC---c-----EEEEEeCCCCCHHHHHHHHH
Q 003367 86 EKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFD---K-----RIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 86 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~---~-----~~wv~~~~~~~~~~~~~~i~ 157 (826)
..+++...+... .-..-+.++|+.|+||+|+|.+++...--...-+ | .-++.....+|...+.-+
T Consensus 10 ~~~~l~~~~~~~-----rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~-- 82 (334)
T PRK07993 10 DYEQLVGSYQAG-----RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPE-- 82 (334)
T ss_pred HHHHHHHHHHcC-----CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecc--
Confidence 445666666443 2345778999999999999999877432111000 0 000000000110000000
Q ss_pred HHhcccchhhhhHHHHHHHHHHH-hcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccH-HHHhhc-cccc
Q 003367 158 ESFRDVVSAVAAFDTLLRHIEKS-VKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKE-DVAKMM-RTTS 234 (826)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~-~v~~~~-~~~~ 234 (826)
-+...-..+.+.++.+.+... ..+++=++|+|++...+......++..+....+++.+|++|.+. .+.... .-..
T Consensus 83 --~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq 160 (334)
T PRK07993 83 --KGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCR 160 (334)
T ss_pred --cccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccc
Confidence 000000112222222222211 13667799999997767777788888888777777777766654 344332 2245
Q ss_pred eEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHH
Q 003367 235 MILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKT 286 (826)
Q Consensus 235 ~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~ 286 (826)
.+.+.+++.+++.+.+.... +. + .+.+..++..++|.|.....
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~--~~---~----~~~a~~~~~la~G~~~~Al~ 203 (334)
T PRK07993 161 LHYLAPPPEQYALTWLSREV--TM---S----QDALLAALRLSAGAPGAALA 203 (334)
T ss_pred cccCCCCCHHHHHHHHHHcc--CC---C----HHHHHHHHHHcCCCHHHHHH
Confidence 78899999999888776532 11 1 23356789999999964433
No 216
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0051 Score=66.65 Aligned_cols=99 Identities=16% Similarity=0.281 Sum_probs=63.7
Q ss_pred cCCccccchHHHHHHHHHHcCCCCC------CCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCH
Q 003367 76 DVSKVRGRDEEKKTIIDLLLGSSSQ------EKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDE 149 (826)
Q Consensus 76 ~~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 149 (826)
.-.++-|.+..+.++.+++..-..+ +-..++=|.+||++|.|||.||++++.... -. ++.++.+
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~--vP-----f~~isAp--- 257 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG--VP-----FLSISAP--- 257 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC--Cc-----eEeecch---
Confidence 3456889999999888877543221 223456789999999999999999999443 22 3333321
Q ss_pred HHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCC
Q 003367 150 IRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVW 194 (826)
Q Consensus 150 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 194 (826)
+|+....+. ..+.+.+.+.+.-..-++++++|+++
T Consensus 258 -----eivSGvSGE-----SEkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 258 -----EIVSGVSGE-----SEKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred -----hhhcccCcc-----cHHHHHHHHHHHhccCCeEEEeeccc
Confidence 222222221 12334444555556789999999994
No 217
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.22 E-value=0.0013 Score=78.57 Aligned_cols=138 Identities=17% Similarity=0.257 Sum_probs=78.4
Q ss_pred CccccchHHHHHHHHHHcCCCC---CCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSS---QEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAK 154 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 154 (826)
..++|.++.++.+...+..... ..+.....+.++|+.|+|||+||+.+++..- ..-...+.++.+.-.+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~--~~~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF--GSEDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc--CCccceEEEEchhccccccH--
Confidence 5689999999999888753211 0122334677999999999999999997321 11123344444432221111
Q ss_pred HHHHHhcccchhhhhHHHHHHHHHHHhcCCc-eeEEeccCCCCChhhHHHHHhhhcCC-----------CCCcEEEEecc
Q 003367 155 AILESFRDVVSAVAAFDTLLRHIEKSVKGKK-FLLVLDDVWSGNPTKWEELVSTLKFG-----------SPESRILVTTR 222 (826)
Q Consensus 155 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~~~~~~~~~l~~~~~~~-----------~~~s~iivTtR 222 (826)
...++.. +.....++ ...+.+.++.++ .+|+||++...+++.+..+...+..+ ...+-||+||.
T Consensus 585 --~~l~g~~-~gyvg~~~-~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn 660 (821)
T CHL00095 585 --SKLIGSP-PGYVGYNE-GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSN 660 (821)
T ss_pred --HHhcCCC-CcccCcCc-cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCC
Confidence 1112211 11111111 012233333444 58999999777777888888777654 24556777776
Q ss_pred c
Q 003367 223 K 223 (826)
Q Consensus 223 ~ 223 (826)
.
T Consensus 661 ~ 661 (821)
T CHL00095 661 L 661 (821)
T ss_pred c
Confidence 4
No 218
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.19 E-value=0.0079 Score=63.13 Aligned_cols=93 Identities=15% Similarity=0.175 Sum_probs=65.0
Q ss_pred CCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEeccc-HHHHhhc-cccceEEccCCCCchhHHHHHHhhhcCCCc
Q 003367 183 GKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRK-EDVAKMM-RTTSMILLAKLPDNDCWSLFSQIAFSGRTT 260 (826)
Q Consensus 183 ~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~ 260 (826)
+++-++|+|++...+...+..++..+....+++.+|++|.+ ..+...+ .-...+.+.+++.++..+.+.... ..
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~~- 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---VA- 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---CC-
Confidence 55668999999877888889999998877777766655554 4444332 234688999999999998887641 11
Q ss_pred ccchhhHHHHHHHHHhcCCCchhHHHH
Q 003367 261 EECQKLTDIGRMIADKCNGLPLAAKTS 287 (826)
Q Consensus 261 ~~~~~~~~~~~~i~~~~~glPLal~~~ 287 (826)
+ .+.++..++|.|+....+
T Consensus 207 -~-------~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 207 -D-------ADALLAEAGGAPLAALAL 225 (342)
T ss_pred -h-------HHHHHHHcCCCHHHHHHH
Confidence 1 123577889999755443
No 219
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.18 E-value=0.003 Score=60.38 Aligned_cols=36 Identities=28% Similarity=0.528 Sum_probs=28.3
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEE
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWV 141 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv 141 (826)
...+|.|.|+.|.||||+|+.++.. ....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~--l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYER--LKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEE
Confidence 4569999999999999999999984 33455555555
No 220
>PRK04296 thymidine kinase; Provisional
Probab=97.17 E-value=0.00078 Score=65.02 Aligned_cols=113 Identities=14% Similarity=0.048 Sum_probs=63.8
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchh--hhhHHHHHHHHHHHhcC
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSA--VAAFDTLLRHIEKSVKG 183 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~ 183 (826)
.++.|+|..|.||||+|..++.... .+...++.+. ..++.+.....++++++..... ....+++.+.+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~--~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE--ERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH--HcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 4788999999999999999988443 3333333332 1112222233455555432211 1233444444444 334
Q ss_pred CceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccHH
Q 003367 184 KKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKED 225 (826)
Q Consensus 184 k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~~ 225 (826)
+.-+||+|.+.--+.++..++...+ ...|..||+|.++..
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 5568999999543333334444433 245778999998743
No 221
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0017 Score=71.97 Aligned_cols=166 Identities=17% Similarity=0.286 Sum_probs=92.1
Q ss_pred CCccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHH
Q 003367 77 VSKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAI 156 (826)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 156 (826)
+.+-+|.++..++|+++|.-..-.....-+++++||++|||||+|++.+++ .....| +-+++..-.|..++-..-
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEIRGHR 396 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHhcccc
Confidence 345689999999999998643221223447999999999999999999998 444444 234555555544443222
Q ss_pred HHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCCh----hhHHHHHhhhcCCC-------------CCcEEE-
Q 003367 157 LESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNP----TKWEELVSTLKFGS-------------PESRIL- 218 (826)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~l~~~~~~~~-------------~~s~ii- 218 (826)
-..+|.-+ ..+++.+++ ...++=|++||.++-... +--.+++..+.+.. -=|.|+
T Consensus 397 RTYIGamP------GrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 397 RTYIGAMP------GKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred ccccccCC------hHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEE
Confidence 11121111 122222222 245778999999932110 11123444333211 113333
Q ss_pred Eeccc-HH-H-HhhccccceEEccCCCCchhHHHHHHhh
Q 003367 219 VTTRK-ED-V-AKMMRTTSMILLAKLPDNDCWSLFSQIA 254 (826)
Q Consensus 219 vTtR~-~~-v-~~~~~~~~~~~l~~L~~~~~~~lf~~~a 254 (826)
|||-+ -+ + +..+....++++.+-+++|-.++-+++.
T Consensus 470 iaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 470 IATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 34432 22 1 1223345688999999988777666553
No 222
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.15 E-value=0.00038 Score=72.32 Aligned_cols=51 Identities=18% Similarity=0.285 Sum_probs=42.8
Q ss_pred ccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhccc
Q 003367 79 KVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
+++|.++.++++++++...+......-++++|+|++|.||||||+++++..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 699999999999999976543223356899999999999999999999854
No 223
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.14 E-value=0.0055 Score=56.31 Aligned_cols=116 Identities=20% Similarity=0.158 Sum_probs=65.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCC---CCHHHHHHHHHHHh-----cc------cc--hhhhhH
Q 003367 107 IISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDP---VDEIRVAKAILESF-----RD------VV--SAVAAF 170 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l-----~~------~~--~~~~~~ 170 (826)
.|-|++-.|.||||+|...+-.. ..+=..+.++-+-.. .....+++.+- .+ +. .. ......
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra--~~~g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRA--LGHGYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHHHH
Confidence 67888889999999999988733 233334455444332 33333333330 00 00 00 011112
Q ss_pred HHHHHHHHHHhcC-CceeEEeccCCC---CChhhHHHHHhhhcCCCCCcEEEEecccHH
Q 003367 171 DTLLRHIEKSVKG-KKFLLVLDDVWS---GNPTKWEELVSTLKFGSPESRILVTTRKED 225 (826)
Q Consensus 171 ~~~~~~l~~~l~~-k~~LlVlDdv~~---~~~~~~~~l~~~~~~~~~~s~iivTtR~~~ 225 (826)
.+..+..++.+.. .-=|+|||++-. -..-..+.+...+.....+..+|+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 2233344444443 445999999822 122345667777777777889999999853
No 224
>PRK07261 topology modulation protein; Provisional
Probab=97.14 E-value=0.0011 Score=62.75 Aligned_cols=34 Identities=35% Similarity=0.522 Sum_probs=24.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcccccc-cCCCcEEE
Q 003367 107 IISILGTGGVGKTTLARLVFNEVKVD-AHFDKRIW 140 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~w 140 (826)
.|.|+|++|+||||||+++....... -+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 48999999999999999998743221 13354555
No 225
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.12 E-value=0.0017 Score=64.05 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=36.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHH
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAK 154 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 154 (826)
.-+++.|+|.+|+|||++|.+++... ......++|++... ++...+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~--~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNA--ARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCC-CCHHHHHH
Confidence 45799999999999999999998743 23346789999875 55555443
No 226
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.11 E-value=0.0026 Score=63.54 Aligned_cols=46 Identities=24% Similarity=0.236 Sum_probs=35.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHH
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRV 152 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 152 (826)
.-.++.|+|.+|+|||++|.+++.... ..-..++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~--~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA--KNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEECC-CCCHHHH
Confidence 456999999999999999999987432 334678899887 5555443
No 227
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.09 E-value=0.0027 Score=66.45 Aligned_cols=102 Identities=16% Similarity=0.197 Sum_probs=62.7
Q ss_pred HHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCc-EEEEEeCC-CCCHHHHHHHHHHHhccc
Q 003367 86 EKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDK-RIWVCFSD-PVDEIRVAKAILESFRDV 163 (826)
Q Consensus 86 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~-~~~~~~~~~~i~~~l~~~ 163 (826)
-..++++.+..-. .-+.+.|+|..|+|||||++.+++.... .+-+. ++|+.+.+ ..++.++...+...+...
T Consensus 119 ~~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~i~~-~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 119 LSMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAAVAA-NHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred hhHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEEecCCCCCHHHHHHHHhhhEEee
Confidence 3455777776432 2245799999999999999999884321 12233 35666654 456778888887766543
Q ss_pred chhh---h--hHHHHHHHHHHHh--cCCceeEEeccC
Q 003367 164 VSAV---A--AFDTLLRHIEKSV--KGKKFLLVLDDV 193 (826)
Q Consensus 164 ~~~~---~--~~~~~~~~l~~~l--~~k~~LlVlDdv 193 (826)
..+. . ........+.+++ ++++++||+|++
T Consensus 193 t~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 193 TFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 2111 1 1111112222222 589999999999
No 228
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.08 E-value=0.0078 Score=57.70 Aligned_cols=123 Identities=20% Similarity=0.326 Sum_probs=73.1
Q ss_pred ccCCccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHH
Q 003367 75 IDVSKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAK 154 (826)
Q Consensus 75 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 154 (826)
++-..++|.|...+.+++--..=.. .....-|.+||.-|+||++|++++.+ ++....-..+-|+ .
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~--G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glrLVEV~--k--------- 121 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAE--GLPANNVLLWGARGTGKSSLVKALLN--EYADEGLRLVEVD--K--------- 121 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHc--CCcccceEEecCCCCChHHHHHHHHH--HHHhcCCeEEEEc--H---------
Confidence 3445689999988888764321110 11223588999999999999999998 4344443333222 1
Q ss_pred HHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCC-CChhhHHHHHhhhcCC---CCCcEEEEecccH
Q 003367 155 AILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWS-GNPTKWEELVSTLKFG---SPESRILVTTRKE 224 (826)
Q Consensus 155 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~~~~~---~~~s~iivTtR~~ 224 (826)
.+..++..+.+.++. ..+||+|..||..- ++...+..+...+..+ .+...++..|.++
T Consensus 122 ----------~dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 122 ----------EDLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred ----------HHHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 112222333333332 57899999999832 3345667777777543 3444555555543
No 229
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.07 E-value=0.00013 Score=63.09 Aligned_cols=94 Identities=26% Similarity=0.340 Sum_probs=79.3
Q ss_pred hhhccCCCCcEEecccccccccccccccccccc-CCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchh
Q 003367 456 SLFDRLTCLRTLCLRCHERHFCLSIARLPRNIK-KLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQG 534 (826)
Q Consensus 456 ~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~-~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~ 534 (826)
..+.....|...+|+ +| .++++|..|. +.+.++.|+|++|. +..+|..+..++.|+.|+++.|. +...|..
T Consensus 47 y~l~~~~el~~i~ls-----~N-~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~-l~~~p~v 118 (177)
T KOG4579|consen 47 YMLSKGYELTKISLS-----DN-GFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNP-LNAEPRV 118 (177)
T ss_pred HHHhCCceEEEEecc-----cc-hhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCc-cccchHH
Confidence 345666778888999 55 6777887765 45589999999999 99999999999999999999998 6778899
Q ss_pred hhcccCCCeeeecCcccccCCcc
Q 003367 535 IAKLINLRHLINEGTPLLYLPKG 557 (826)
Q Consensus 535 i~~L~~L~~L~l~~~~l~~lp~~ 557 (826)
|..|.+|-+|+..+|.+..+|-.
T Consensus 119 i~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 119 IAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred HHHHHhHHHhcCCCCccccCcHH
Confidence 99999999999999888877765
No 230
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.00097 Score=73.34 Aligned_cols=105 Identities=17% Similarity=0.308 Sum_probs=65.3
Q ss_pred CCccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHH
Q 003367 77 VSKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAI 156 (826)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 156 (826)
+.+-+|.++-+++|.+++.-..-.++.+-++++.+|++|||||++|+.++.- ....| +-+++..-.|+.++-..-
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~A--LnRkF---fRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARA--LNRKF---FRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHH--hCCce---EEEeccccccHHhhcccc
Confidence 4556899999999999986443223446689999999999999999999983 33333 224555555554442221
Q ss_pred HHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccC
Q 003367 157 LESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDV 193 (826)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv 193 (826)
-..++..+ ..+++.+++. +..+=|+.+|.|
T Consensus 485 RTYVGAMP------GkiIq~LK~v-~t~NPliLiDEv 514 (906)
T KOG2004|consen 485 RTYVGAMP------GKIIQCLKKV-KTENPLILIDEV 514 (906)
T ss_pred eeeeccCC------hHHHHHHHhh-CCCCceEEeehh
Confidence 11111110 1233333332 345668999998
No 231
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.06 E-value=0.0016 Score=68.04 Aligned_cols=102 Identities=17% Similarity=0.210 Sum_probs=55.2
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCc
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKK 185 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 185 (826)
.-+.++|..|+|||.||.++++... ..-..++|+++. ++...+...-... ..+... .+.. +. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~--~~g~~V~y~t~~------~l~~~l~~~~~~~---~~~~~~---~~~~-l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL--DRGKSVIYRTAD------ELIEILREIRFNN---DKELEE---VYDL-LI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH--HCCCeEEEEEHH------HHHHHHHHHHhcc---chhHHH---HHHH-hc-cC
Confidence 5699999999999999999999543 222346666542 2333332211110 001111 1222 22 22
Q ss_pred eeEEeccCCCCChhhHH--HHHhhhcCC-CCCcEEEEeccc
Q 003367 186 FLLVLDDVWSGNPTKWE--ELVSTLKFG-SPESRILVTTRK 223 (826)
Q Consensus 186 ~LlVlDdv~~~~~~~~~--~l~~~~~~~-~~~s~iivTtR~ 223 (826)
=||||||+.......|. .+...+... ..+-.+||||.-
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 48999999655433443 344333321 234568888874
No 232
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.03 E-value=0.00078 Score=61.38 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=63.5
Q ss_pred ccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccc-cCCCcEEEEEeCCCCCHHHHHHHHHHH
Q 003367 81 RGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVD-AHFDKRIWVCFSDPVDEIRVAKAILES 159 (826)
Q Consensus 81 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i~~~ 159 (826)
||+...++++.+.+..-+. ...-|.|+|..|+||+++|+.++...... ..|.. +.+.... .++
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~---~~~~~~~------~~~--- 64 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIV---IDCASLP------AEL--- 64 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCC---CCHHCTC------HHH---
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEE---echhhCc------HHH---
Confidence 5777777777776654332 33458999999999999999998843211 11211 1111100 111
Q ss_pred hcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcC-CCCCcEEEEecccH
Q 003367 160 FRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKF-GSPESRILVTTRKE 224 (826)
Q Consensus 160 l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~-~~~~s~iivTtR~~ 224 (826)
+.+ .+.--++|+|+..-+......+...+.. .....|+|.||+..
T Consensus 65 -----------------l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 65 -----------------LEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp -----------------HHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred -----------------HHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 111 2455688999976666666677776653 35678999999853
No 233
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.02 E-value=0.0045 Score=73.29 Aligned_cols=181 Identities=16% Similarity=0.149 Sum_probs=93.8
Q ss_pred CccccchHHHHHHHHHHcCCCC-------CCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSS-------QEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEI 150 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 150 (826)
.++.|.++.++++.+++...-. -+-...+-|.++|++|+|||+||+++++.. ...| +.++...
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~--~~~~---i~i~~~~----- 247 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA--GAYF---ISINGPE----- 247 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh--CCeE---EEEecHH-----
Confidence 4588999999998887642210 011234678999999999999999999843 2222 2222111
Q ss_pred HHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCC-----------hhhHHHHHhhhcCC-CCCcEEE
Q 003367 151 RVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGN-----------PTKWEELVSTLKFG-SPESRIL 218 (826)
Q Consensus 151 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~~~~~-~~~s~ii 218 (826)
+ .....+ .....+...+.......+.+|++|++.... ......+...+... ..+..++
T Consensus 248 -i----~~~~~g-----~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~viv 317 (733)
T TIGR01243 248 -I----MSKYYG-----ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIV 317 (733)
T ss_pred -H----hccccc-----HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEE
Confidence 1 111100 011222333333345667899999983210 01122333333322 2233344
Q ss_pred E-ecccHH-HHhhc----cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchh
Q 003367 219 V-TTRKED-VAKMM----RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLA 283 (826)
Q Consensus 219 v-TtR~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLa 283 (826)
| ||.... +...+ .-...+.+...+.++-.+++....-.... ... .....+++.+.|.--|
T Consensus 318 I~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-~~d----~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 318 IGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL-AED----VDLDKLAEVTHGFVGA 383 (733)
T ss_pred EeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC-ccc----cCHHHHHHhCCCCCHH
Confidence 4 554432 11111 12346778777888888888755322111 111 1245577788876543
No 234
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.99 E-value=0.0025 Score=70.51 Aligned_cols=88 Identities=20% Similarity=0.302 Sum_probs=62.4
Q ss_pred CCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHh
Q 003367 102 KMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSV 181 (826)
Q Consensus 102 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 181 (826)
++.-+|..++|++|+||||||.-++++.- | .++-|++|+..+...+-..|...+... ..+
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~---------------s~l 382 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNH---------------SVL 382 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhc---------------ccc
Confidence 45668999999999999999999998432 2 477888998888777766666554321 112
Q ss_pred --cCCceeEEeccCCCCChhhHHHHHhhhc
Q 003367 182 --KGKKFLLVLDDVWSGNPTKWEELVSTLK 209 (826)
Q Consensus 182 --~~k~~LlVlDdv~~~~~~~~~~l~~~~~ 209 (826)
.+++.-+|+|.++.......+.+...+.
T Consensus 383 ~adsrP~CLViDEIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 383 DADSRPVCLVIDEIDGAPRAAVDVILSLVK 412 (877)
T ss_pred ccCCCcceEEEecccCCcHHHHHHHHHHHH
Confidence 3688899999996555444555555443
No 235
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.97 E-value=0.0033 Score=73.20 Aligned_cols=134 Identities=17% Similarity=0.240 Sum_probs=75.6
Q ss_pred CccccchHHHHHHHHHHcCCCC---CCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSS---QEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAK 154 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 154 (826)
..++|.++.++.|.+.+..... ..+.....+.++|+.|+|||++|+.++... . ...+.++++.-....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l--~---~~~i~id~se~~~~~---- 528 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEYMERH---- 528 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh--C---CCcEEeechhhcccc----
Confidence 3489999999999888763211 012234578999999999999999999843 2 223344444322111
Q ss_pred HHHHHhcccchhhhhHHHHHHHHHHHhc-CCceeEEeccCCCCChhhHHHHHhhhcCCC-----------CCcEEEEecc
Q 003367 155 AILESFRDVVSAVAAFDTLLRHIEKSVK-GKKFLLVLDDVWSGNPTKWEELVSTLKFGS-----------PESRILVTTR 222 (826)
Q Consensus 155 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~-----------~~s~iivTtR 222 (826)
.+...++... .....+. ...+.+.++ ....+|+||++..-+++.+..+...+..+. .++-||+||.
T Consensus 529 ~~~~LiG~~~-gyvg~~~-~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN 606 (758)
T PRK11034 529 TVSRLIGAPP-GYVGFDQ-GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606 (758)
T ss_pred cHHHHcCCCC-Ccccccc-cchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCC
Confidence 1112222211 1110000 011222222 344699999997667777777777665431 2334777775
No 236
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.97 E-value=0.0046 Score=61.45 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=32.3
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCC
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVD 148 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 148 (826)
.-+++.|+|.+|+||||+|.+++... ...-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~--~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET--AGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCCCCH
Confidence 45789999999999999999998743 23334677887655543
No 237
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.95 E-value=0.01 Score=65.63 Aligned_cols=180 Identities=12% Similarity=0.094 Sum_probs=91.7
Q ss_pred CccccchHHHHHHHHHH---cCC-CCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLL---LGS-SSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVA 153 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L---~~~-~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 153 (826)
.++.|.+..++.+.+.. ... ..-+-..++-|.++|++|.|||.+|+++++... ..| +-++.+.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~--~~~---~~l~~~~-------- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ--LPL---LRLDVGK-------- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CCE---EEEEhHH--------
Confidence 45778877666655422 110 000123456799999999999999999998532 221 2222211
Q ss_pred HHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCC--------ChhhHHH----HHhhhcCCCCCcEEEEec
Q 003367 154 KAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSG--------NPTKWEE----LVSTLKFGSPESRILVTT 221 (826)
Q Consensus 154 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--------~~~~~~~----l~~~~~~~~~~s~iivTt 221 (826)
+.....+. .. ..+.+.+...-...+++|++|++..- +...-.. +...+.....+.-||.||
T Consensus 295 --l~~~~vGe--se---~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT 367 (489)
T CHL00195 295 --LFGGIVGE--SE---SRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA 367 (489)
T ss_pred --hcccccCh--HH---HHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 11111110 01 11222222222457899999999421 0011111 222222233344566677
Q ss_pred ccHHHH-----hhccccceEEccCCCCchhHHHHHHhhhcCCCc-ccchhhHHHHHHHHHhcCCCc
Q 003367 222 RKEDVA-----KMMRTTSMILLAKLPDNDCWSLFSQIAFSGRTT-EECQKLTDIGRMIADKCNGLP 281 (826)
Q Consensus 222 R~~~v~-----~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~-~~~~~~~~~~~~i~~~~~glP 281 (826)
...... +...-+..+.+..-+.++-.++|..+..+.... ....+ ...+++.+.|.-
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~d----l~~La~~T~GfS 429 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYD----IKKLSKLSNKFS 429 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccC----HHHHHhhcCCCC
Confidence 655321 111235678888888888888998776442211 11112 345666666654
No 238
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.95 E-value=0.00062 Score=78.39 Aligned_cols=32 Identities=41% Similarity=0.494 Sum_probs=15.5
Q ss_pred cccCCCeeeecCcccccCCccCCCCCCCCcCCc
Q 003367 537 KLINLRHLINEGTPLLYLPKGLERLTCLRTLSE 569 (826)
Q Consensus 537 ~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~ 569 (826)
++++|+.||+|++++..+ .++++|++|+.|.+
T Consensus 171 sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~m 202 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNL-SGISRLKNLQVLSM 202 (699)
T ss_pred ccCccceeecCCCCccCc-HHHhccccHHHHhc
Confidence 444555555555444444 44455555555543
No 239
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.94 E-value=0.0057 Score=61.24 Aligned_cols=87 Identities=22% Similarity=0.187 Sum_probs=52.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCC------CcEEEEEeCCCCCHHHHHHHHHHHhcccc---------hhhh
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHF------DKRIWVCFSDPVDEIRVAKAILESFRDVV---------SAVA 168 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---------~~~~ 168 (826)
.-.++.|+|.+|+|||++|.+++.... ... ..++|++....++...+. .+.+...... ....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~--~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQ--LPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhh--cccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCC
Confidence 456999999999999999999986432 222 567899887776665443 3333322110 0112
Q ss_pred hHHHHHHHHHHHh----cCCceeEEeccC
Q 003367 169 AFDTLLRHIEKSV----KGKKFLLVLDDV 193 (826)
Q Consensus 169 ~~~~~~~~l~~~l----~~k~~LlVlDdv 193 (826)
+.+++...+.+.. ..+.-+||+|.+
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsi 123 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSV 123 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence 2334444444333 234458899988
No 240
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.94 E-value=0.0021 Score=60.33 Aligned_cols=133 Identities=22% Similarity=0.218 Sum_probs=67.1
Q ss_pred cccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHH
Q 003367 80 VRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILES 159 (826)
Q Consensus 80 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 159 (826)
++|.+..++++.+.+..-+. ...-|.|+|..|+||+.+|+.+++.-. ..-...+-|+++.- +.+.+...+.-.
T Consensus 1 liG~s~~m~~~~~~~~~~a~----~~~pVlI~GE~GtGK~~lA~~IH~~s~--r~~~pfi~vnc~~~-~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----SDLPVLITGETGTGKELLARAIHNNSP--RKNGPFISVNCAAL-PEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----STS-EEEECSTTSSHHHHHHHHHHCST--TTTS-EEEEETTTS--HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhC----CCCCEEEEcCCCCcHHHHHHHHHHhhh--cccCCeEEEehhhh-hcchhhhhhhcc
Confidence 47888888888887765443 224577999999999999999998321 12223444555532 333333333221
Q ss_pred hcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCC------C-----CCcEEEEecccH
Q 003367 160 FRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFG------S-----PESRILVTTRKE 224 (826)
Q Consensus 160 l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~------~-----~~s~iivTtR~~ 224 (826)
-.+....... ...-.+. ....=-|+||+|..-....-..+...+..+ . ...|||.||...
T Consensus 74 ~~~~~~~~~~--~~~G~l~---~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 74 EKGAFTGARS--DKKGLLE---QANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp CSSSSTTTSS--EBEHHHH---HTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred cccccccccc--ccCCcee---eccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 1110000000 0001111 123347889999655554445555555321 1 256888888753
No 241
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.93 E-value=0.0022 Score=55.28 Aligned_cols=22 Identities=41% Similarity=0.673 Sum_probs=19.6
Q ss_pred EEEEecCCCcHHHHHHHHhccc
Q 003367 108 ISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 108 v~I~G~gGiGKTtLa~~v~~~~ 129 (826)
|.|+|.+|+|||++|+.++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999998854
No 242
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.91 E-value=0.015 Score=61.07 Aligned_cols=113 Identities=16% Similarity=0.174 Sum_probs=58.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCC--HHHHHHHHHHHhcccchhhhhHHHHHHHHHHHh
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVD--EIRVAKAILESFRDVVSAVAAFDTLLRHIEKSV 181 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 181 (826)
..++|+|+|.+|+||||++.+++.... .+-..+..++... +. ..+-++..++.++.......+.+.+.+.+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~--~~GkkVglI~aDt-~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH--GKKKTVGFITTDH-SRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH--HcCCcEEEEecCC-cchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 458999999999999999999987443 2212344555432 22 222233333444433222223344444444432
Q ss_pred cC-CceeEEeccCCCCC--hhhHHHHHhhhcCCCCCcEEEE
Q 003367 182 KG-KKFLLVLDDVWSGN--PTKWEELVSTLKFGSPESRILV 219 (826)
Q Consensus 182 ~~-k~~LlVlDdv~~~~--~~~~~~l~~~~~~~~~~s~iiv 219 (826)
.. +.=+|++|-..... ....+.+...+....+...++|
T Consensus 317 ~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLV 357 (436)
T PRK11889 317 EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLT 357 (436)
T ss_pred hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEE
Confidence 21 23478888874422 3344555554443333333343
No 243
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.85 E-value=0.0053 Score=69.25 Aligned_cols=44 Identities=36% Similarity=0.547 Sum_probs=36.3
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhc
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 127 (826)
.+++|.+..++.+...+... ...-|.|+|..|+|||++|+.+++
T Consensus 65 ~~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHH
Confidence 35899999999998876443 234578999999999999999986
No 244
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.85 E-value=0.0078 Score=60.96 Aligned_cols=89 Identities=24% Similarity=0.294 Sum_probs=54.9
Q ss_pred CccEEEEEecCCCcHHHHHHHHhccccccc----CCCcEEEEEeCCCCCHHHHHHHHHHHhcccch------------hh
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDA----HFDKRIWVCFSDPVDEIRVAKAILESFRDVVS------------AV 167 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------~~ 167 (826)
.-.+.=|+|.+|+|||.||.+++-...... .=..++|++-...++.+++. +|++....... ..
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 346899999999999999998875433222 22458999998888887765 45665442211 11
Q ss_pred hhHHHHHHHHHHHh-cCCceeEEeccC
Q 003367 168 AAFDTLLRHIEKSV-KGKKFLLVLDDV 193 (826)
Q Consensus 168 ~~~~~~~~~l~~~l-~~k~~LlVlDdv 193 (826)
.+..++...+...+ ..+--|||+|.+
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHhhccccceEEEEecch
Confidence 12222333333333 344558999998
No 245
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.84 E-value=0.0042 Score=60.00 Aligned_cols=89 Identities=19% Similarity=0.160 Sum_probs=52.6
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCC-CCHHHHHHHHHHHhcccchh---h-hhHHHHHHHHHH
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDP-VDEIRVAKAILESFRDVVSA---V-AAFDTLLRHIEK 179 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~---~-~~~~~~~~~l~~ 179 (826)
++||.++|+.|+||||.+.+++.....+ -..+..++.... ....+-++..++.++.+... . ...+.+.+.+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 4689999999999999988888754433 344666665432 23455677778887754221 1 122333334444
Q ss_pred HhcCCceeEEeccCCC
Q 003367 180 SVKGKKFLLVLDDVWS 195 (826)
Q Consensus 180 ~l~~k~~LlVlDdv~~ 195 (826)
.-.++.=+|++|=...
T Consensus 79 ~~~~~~D~vlIDT~Gr 94 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAGR 94 (196)
T ss_dssp HHHTTSSEEEEEE-SS
T ss_pred HhhcCCCEEEEecCCc
Confidence 3233345888887743
No 246
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.82 E-value=0.0055 Score=61.63 Aligned_cols=86 Identities=19% Similarity=0.222 Sum_probs=50.9
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCC-cEEEEEeCCCC-CHHHHHHHHHHHhcc-------cchhh---h--hHH
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFD-KRIWVCFSDPV-DEIRVAKAILESFRD-------VVSAV---A--AFD 171 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~---~--~~~ 171 (826)
+.++|+|..|+||||||+.+++. .+.+|+ .++++-+.+.. .+.++...+.+.=.. ...+. . ...
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 56899999999999999999994 444553 44555555433 344555555432110 00111 0 111
Q ss_pred HHHHHHHHHh---cCCceeEEeccC
Q 003367 172 TLLRHIEKSV---KGKKFLLVLDDV 193 (826)
Q Consensus 172 ~~~~~l~~~l---~~k~~LlVlDdv 193 (826)
...-.+.+++ +++.+|+|+||+
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1222334444 389999999999
No 247
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.82 E-value=0.0005 Score=62.83 Aligned_cols=89 Identities=28% Similarity=0.293 Sum_probs=48.6
Q ss_pred EEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCcee
Q 003367 108 ISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFL 187 (826)
Q Consensus 108 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~L 187 (826)
|.|+|.+|+|||+||+.+++.. . ....-+.++...+..++....--.-+...-.. ..+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~--~---~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~---~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL--G---RPVIRINCSSDTTEEDLIGSYDPSNGQFEFKD---GPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH--T---CEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE----CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh--h---cceEEEEeccccccccceeeeeeccccccccc---ccccccc-----cceeE
Confidence 6799999999999999999843 1 22344677777776655432221100000000 0000000 17889
Q ss_pred EEeccCCCCChhhHHHHHhhhc
Q 003367 188 LVLDDVWSGNPTKWEELVSTLK 209 (826)
Q Consensus 188 lVlDdv~~~~~~~~~~l~~~~~ 209 (826)
+|||++...+...++.+...+.
T Consensus 69 l~lDEin~a~~~v~~~L~~ll~ 90 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLLE 90 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHHS
T ss_pred EEECCcccCCHHHHHHHHHHHh
Confidence 9999995445555555555443
No 248
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.80 E-value=0.012 Score=59.23 Aligned_cols=172 Identities=21% Similarity=0.273 Sum_probs=94.3
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCC-CcEEEEEeCCCCCH-HHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHF-DKRIWVCFSDPVDE-IRVAKA 155 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~-~~~~~~ 155 (826)
..++|-.++..++..++....-. +...-|.|+|+.|.|||+|......+ ...| +...-|......-. .-.++.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~--gEsnsviiigprgsgkT~li~~~Ls~---~q~~~E~~l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILH--GESNSVIIIGPRGSGKTILIDTRLSD---IQENGENFLLVRLNGELQTDKIALKG 98 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHh--cCCCceEEEccCCCCceEeeHHHHhh---HHhcCCeEEEEEECccchhhHHHHHH
Confidence 45889999999998888654321 12335889999999999998888775 1233 23334444443322 235666
Q ss_pred HHHHhcccc----hhhhhHHHHHHHHHHHhc------CCceeEEeccCCCCChhhHHHHHhhh-c----CCCCCcEEEEe
Q 003367 156 ILESFRDVV----SAVAAFDTLLRHIEKSVK------GKKFLLVLDDVWSGNPTKWEELVSTL-K----FGSPESRILVT 220 (826)
Q Consensus 156 i~~~l~~~~----~~~~~~~~~~~~l~~~l~------~k~~LlVlDdv~~~~~~~~~~l~~~~-~----~~~~~s~iivT 220 (826)
|..++.... .......+....+-..|+ +-++++|+|.++-.-...-..+...+ . ...|-+-|-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 666654321 111222233333333332 34688999888432211112222222 1 23456677899
Q ss_pred cccHHH---Hhhc----cccceEEccCCCCchhHHHHHHhh
Q 003367 221 TRKEDV---AKMM----RTTSMILLAKLPDNDCWSLFSQIA 254 (826)
Q Consensus 221 tR~~~v---~~~~----~~~~~~~l~~L~~~~~~~lf~~~a 254 (826)
||-... .+.+ .-..++-++.++-++...+++...
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 996432 1212 112255566677777777776654
No 249
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.79 E-value=0.00097 Score=59.23 Aligned_cols=22 Identities=41% Similarity=0.588 Sum_probs=20.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 003367 107 IISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
||+|.|++|+||||+|+++++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999984
No 250
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.78 E-value=0.016 Score=68.71 Aligned_cols=179 Identities=17% Similarity=0.219 Sum_probs=95.1
Q ss_pred CccccchHHHHHHHHHHcCCCC-------CCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSS-------QEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEI 150 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 150 (826)
.++.|.+..+++|.+.+.-+-. -+-...+-|.++|++|+|||++|+++++.. ...| +.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~--~~~f-----i~v~~~---- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES--GANF-----IAVRGP---- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc--CCCE-----EEEehH----
Confidence 4578888888887776542110 011234568999999999999999999843 2222 222211
Q ss_pred HHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCC--------Ch----hhHHHHHhhhcC--CCCCcE
Q 003367 151 RVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSG--------NP----TKWEELVSTLKF--GSPESR 216 (826)
Q Consensus 151 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--------~~----~~~~~l~~~~~~--~~~~s~ 216 (826)
+++....+. ....+...+...-...+.+|++|++..- +. .....+...+.. ...+.-
T Consensus 522 ----~l~~~~vGe-----se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 ----EILSKWVGE-----SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred ----HHhhcccCc-----HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 111111111 0112222333333467799999998321 00 111223333332 223445
Q ss_pred EEEecccHHHHhh--c---cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCc
Q 003367 217 ILVTTRKEDVAKM--M---RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLP 281 (826)
Q Consensus 217 iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glP 281 (826)
||.||........ + .-+..+.+...+.++-.++|..+..+... ....+ ...+++.+.|.-
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~-~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPL-AEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCC-CccCC----HHHHHHHcCCCC
Confidence 6667765543321 1 23567888888888888888765432211 11122 244667777654
No 251
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.77 E-value=0.0018 Score=60.29 Aligned_cols=93 Identities=24% Similarity=0.303 Sum_probs=70.0
Q ss_pred HhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCC--CCCCCCCCCccceeeccccccceEeCccccc
Q 003367 644 VLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCE--QLPSLGRLPSLESLVVEALSSVRRVGNEFLG 721 (826)
Q Consensus 644 ~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~--~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~ 721 (826)
-...|..+++|..|.|.+|.++.+-|.--..+++|..|.|.+|++.. ++..+..+|.|++|.+-+++.-..-.-...-
T Consensus 56 ~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yv 135 (233)
T KOG1644|consen 56 KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYV 135 (233)
T ss_pred hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEE
Confidence 34567788999999999999999877766678999999999999764 5668889999999998765522221111111
Q ss_pred CCCCccccCccCcCCCccceeecccc
Q 003367 722 IESDDISLSSSSVVFPKLKFLEFRDM 747 (826)
Q Consensus 722 ~~~~~~~~~~~~~~~~~L~~L~l~~~ 747 (826)
+-.+|+|+.|++..-
T Consensus 136 -----------l~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 136 -----------LYKLPSLRTLDFQKV 150 (233)
T ss_pred -----------EEecCcceEeehhhh
Confidence 236899999999865
No 252
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.76 E-value=0.033 Score=57.87 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=24.4
Q ss_pred CCccEEEEEecCCCcHHHHHHHHhccc
Q 003367 103 MSLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 103 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
..++.++|||++|.|||.+|++++...
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999999954
No 253
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.75 E-value=0.0018 Score=60.96 Aligned_cols=43 Identities=26% Similarity=0.261 Sum_probs=30.5
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCC
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVD 148 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 148 (826)
..++.+.|+.|+|||.||+++++-... +.....+-++++.-..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccc
Confidence 457899999999999999999983321 3344566666665433
No 254
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.75 E-value=0.015 Score=61.11 Aligned_cols=71 Identities=14% Similarity=0.208 Sum_probs=47.7
Q ss_pred CCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccHH-HHhhcc-ccceEEccCCCCchhHHHHHHh
Q 003367 183 GKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKED-VAKMMR-TTSMILLAKLPDNDCWSLFSQI 253 (826)
Q Consensus 183 ~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~~-v~~~~~-~~~~~~l~~L~~~~~~~lf~~~ 253 (826)
+++-++|+|++..-+...-..+...+.....+..+|++|.+.. +...+. ....+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 4445666799977677777777777765555666777776643 333322 2467889999999988887653
No 255
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.75 E-value=0.0065 Score=61.21 Aligned_cols=89 Identities=22% Similarity=0.240 Sum_probs=53.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccC----CCcEEEEEeCCCCCHHHHHHHHHHHhcccc------------hhh
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAH----FDKRIWVCFSDPVDEIRVAKAILESFRDVV------------SAV 167 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------~~~ 167 (826)
.-.++.|+|.+|+|||++|.+++........ -..++|++....++..++.. +++..+... ...
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCCH
Confidence 4579999999999999999999753222221 35789999888766554433 333332111 111
Q ss_pred hhHHHHHHHHHHHhc-C-CceeEEeccC
Q 003367 168 AAFDTLLRHIEKSVK-G-KKFLLVLDDV 193 (826)
Q Consensus 168 ~~~~~~~~~l~~~l~-~-k~~LlVlDdv 193 (826)
.+..+....+.+.+. . +.-+||+|.+
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSi 124 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSV 124 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCc
Confidence 222333344444442 3 5668888888
No 256
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.74 E-value=0.047 Score=56.46 Aligned_cols=61 Identities=16% Similarity=0.121 Sum_probs=40.2
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIR 151 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 151 (826)
+.++=..+....+...+... +.|.|.|..|+||||+|++++... ... .+.|.+....+..+
T Consensus 45 ~~y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~~l--~~~---~~rV~~~~~l~~~D 105 (327)
T TIGR01650 45 PAYLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAARL--NWP---CVRVNLDSHVSRID 105 (327)
T ss_pred CCccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHHHH--CCC---eEEEEecCCCChhh
Confidence 34555555666677777432 359999999999999999999843 222 23455555544433
No 257
>PHA02244 ATPase-like protein
Probab=96.73 E-value=0.016 Score=60.58 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=29.7
Q ss_pred CccccchHHH----HHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcc
Q 003367 78 SKVRGRDEEK----KTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 78 ~~~vGr~~~~----~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
..++|..... ..+..++... .-|.|+|+.|+|||++|++++..
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~~--------~PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNAN--------IPVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHH
Confidence 4466654443 4455555332 23788999999999999999984
No 258
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.70 E-value=0.0058 Score=57.49 Aligned_cols=40 Identities=28% Similarity=0.438 Sum_probs=29.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCC
Q 003367 107 IISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVD 148 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 148 (826)
++.|+|.+|+||||+|..++.... ..-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA--TKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH--hcCCEEEEEECCcchH
Confidence 368999999999999999988442 2335577777665443
No 259
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.012 Score=62.81 Aligned_cols=158 Identities=15% Similarity=0.161 Sum_probs=84.6
Q ss_pred CCccccch---HHHHHHHHHHcCCCCC---CCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHH
Q 003367 77 VSKVRGRD---EEKKTIIDLLLGSSSQ---EKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEI 150 (826)
Q Consensus 77 ~~~~vGr~---~~~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 150 (826)
-.++-|-| +|+++|+++|.++..- +..=++=|.++|++|.|||-||++|+-...+ . +|......|+..
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V--P----FF~~sGSEFdEm 376 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV--P----FFYASGSEFDEM 376 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC--C----eEeccccchhhh
Confidence 34566766 4567788888776421 2345677999999999999999999984432 2 222233333221
Q ss_pred HHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCC-----------hhhHHHHHhhhcCCCC--CcEE
Q 003367 151 RVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGN-----------PTKWEELVSTLKFGSP--ESRI 217 (826)
Q Consensus 151 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~~~~~~~--~s~i 217 (826)
.--. ....+.+.+...-+.-+++|.+|.++..- .+.+.+++..+..+.+ |--|
T Consensus 377 ------~VGv--------GArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIv 442 (752)
T KOG0734|consen 377 ------FVGV--------GARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIV 442 (752)
T ss_pred ------hhcc--------cHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEE
Confidence 1111 11222233333335678999999984310 2334455555555443 3333
Q ss_pred EEecccHHHHhh-c----cccceEEccCCCCchhHHHHHHhh
Q 003367 218 LVTTRKEDVAKM-M----RTTSMILLAKLPDNDCWSLFSQIA 254 (826)
Q Consensus 218 ivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~a 254 (826)
|-.|..++.... + .-+..+.|..-+-.--.++|..+.
T Consensus 443 igATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 443 IGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred EeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHH
Confidence 334444443322 1 123445555444444555665554
No 260
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.68 E-value=0.012 Score=61.35 Aligned_cols=58 Identities=21% Similarity=0.248 Sum_probs=41.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccc----cCCCcEEEEEeCCCCCHHHHHHHHHHHhcc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVD----AHFDKRIWVCFSDPVDEIRVAKAILESFRD 162 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 162 (826)
.-+++-|+|.+|+|||++|.+++-..... ..=..++|++....++.+++.+ +++.++.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 44688999999999999999877432221 1124689999988888887654 5666553
No 261
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.013 Score=64.57 Aligned_cols=181 Identities=14% Similarity=0.191 Sum_probs=92.4
Q ss_pred cCCccccchHHHHHHHHHHcCCCCC-------CCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCC
Q 003367 76 DVSKVRGRDEEKKTIIDLLLGSSSQ-------EKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVD 148 (826)
Q Consensus 76 ~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 148 (826)
.-+++-|.++-+.+|.+...-+-.. +-..++-|.++|++|.|||++|+++++ +.+..| +.+..+
T Consensus 432 ~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF-----lsvkgp-- 502 (693)
T KOG0730|consen 432 SWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF-----LSVKGP-- 502 (693)
T ss_pred ChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCe-----eeccCH--
Confidence 3345667887777777655433110 224567899999999999999999999 333344 232221
Q ss_pred HHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCC-----------ChhhHHHHHhhhcCCCCCcE-
Q 003367 149 EIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSG-----------NPTKWEELVSTLKFGSPESR- 216 (826)
Q Consensus 149 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~l~~~~~~~~~~s~- 216 (826)
++....-+. ....+.+.+++.-+--+.+|.||.++.- ......+++..+........
T Consensus 503 ------EL~sk~vGe-----SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V 571 (693)
T KOG0730|consen 503 ------ELFSKYVGE-----SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNV 571 (693)
T ss_pred ------HHHHHhcCc-----hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcE
Confidence 111111111 1122223333333445688888888321 01122333333433222223
Q ss_pred -EEEecccHHHHhh--cc---ccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCc
Q 003367 217 -ILVTTRKEDVAKM--MR---TTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLP 281 (826)
Q Consensus 217 -iivTtR~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glP 281 (826)
||-.|..++.... +. .++.+.++.-+.+.-.++|+.++-+-.. .+.-++.+ |+++..|.-
T Consensus 572 ~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~-~~~vdl~~----La~~T~g~S 637 (693)
T KOG0730|consen 572 LVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPF-SEDVDLEE----LAQATEGYS 637 (693)
T ss_pred EEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCC-CccccHHH----HHHHhccCC
Confidence 3333333332211 22 3567777766777778888888744332 22234444 444444443
No 262
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.62 E-value=0.012 Score=60.71 Aligned_cols=87 Identities=17% Similarity=0.223 Sum_probs=46.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccc-cCCCcEEEEEeCCCC-CHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHh
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVD-AHFDKRIWVCFSDPV-DEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSV 181 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 181 (826)
..++|+|+|++|+||||++.+++.....+ +. ..+..|+..... .....+....+.++.......+..++.+.+.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~-~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~- 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGN-KKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL- 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCC-CeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-
Confidence 45799999999999999999998744322 11 235556543321 112222333333333222222333444444433
Q ss_pred cCCceeEEeccC
Q 003367 182 KGKKFLLVLDDV 193 (826)
Q Consensus 182 ~~k~~LlVlDdv 193 (826)
.+ .=+|++|..
T Consensus 271 ~~-~d~vliDt~ 281 (282)
T TIGR03499 271 RD-KDLILIDTA 281 (282)
T ss_pred cC-CCEEEEeCC
Confidence 32 347777754
No 263
>PHA00729 NTP-binding motif containing protein
Probab=96.62 E-value=0.0078 Score=58.59 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=22.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
+...|.|+|.+|+||||||.++++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4457899999999999999999984
No 264
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.61 E-value=0.021 Score=54.23 Aligned_cols=124 Identities=18% Similarity=0.221 Sum_probs=63.2
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCC--CCHHHHHHHHHHHhccc--c-----hh-----hhhHH
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDP--VDEIRVAKAILESFRDV--V-----SA-----VAAFD 171 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~--~-----~~-----~~~~~ 171 (826)
.+++|+|..|.|||||.+.++.-.. ...+.+++.-... ...... ...++.. . .. ....+
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G~ 101 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGGQ 101 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHHH
Confidence 5899999999999999999987422 2234333321110 001111 1111100 0 00 11112
Q ss_pred HHHHHHHHHhcCCceeEEeccCCC-CChhhHHHHHhhhcCCCCCcEEEEecccHHHHhhccccceEEc
Q 003367 172 TLLRHIEKSVKGKKFLLVLDDVWS-GNPTKWEELVSTLKFGSPESRILVTTRKEDVAKMMRTTSMILL 238 (826)
Q Consensus 172 ~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~~~~~~~~s~iivTtR~~~v~~~~~~~~~~~l 238 (826)
...-.+.+.+-.++-++++|+-.. -|....+.+...+.....+..||++|.+...... .++++.+
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 222234555566778999999743 2333344444444332335678888887665543 3344443
No 265
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.61 E-value=0.021 Score=57.41 Aligned_cols=86 Identities=20% Similarity=0.215 Sum_probs=53.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccch------------------
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVS------------------ 165 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------------ 165 (826)
.-+++.|+|.+|+|||++|.+++.... ..=..++|++..+. ..++.+.+ ++++-...
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~--~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGAL--KQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHH--hCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 457999999999999999999965321 23356788888653 44454443 22321100
Q ss_pred --hhhhHHHHHHHHHHHhcC-CceeEEeccCC
Q 003367 166 --AVAAFDTLLRHIEKSVKG-KKFLLVLDDVW 194 (826)
Q Consensus 166 --~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 194 (826)
.....+.+.+.+.+.+.. +.-++|+|.+-
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 112234556666666643 55689999983
No 266
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.027 Score=62.38 Aligned_cols=161 Identities=16% Similarity=0.118 Sum_probs=84.9
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCC--CHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPV--DEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVK 182 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 182 (826)
..-|.|.|..|+|||+||+++++... +.+.-.+.+|+++.-. ..+.+++.+ ...+.+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l-----------------~~vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFL-----------------NNVFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHH-----------------HHHHHHHHh
Confidence 34689999999999999999998654 4444455566665422 222222222 223344556
Q ss_pred CCceeEEeccCCC------CChhhHHH----HHhhh----c-CCCCCcE--EEEecccHHHHh-hc----cccceEEccC
Q 003367 183 GKKFLLVLDDVWS------GNPTKWEE----LVSTL----K-FGSPESR--ILVTTRKEDVAK-MM----RTTSMILLAK 240 (826)
Q Consensus 183 ~k~~LlVlDdv~~------~~~~~~~~----l~~~~----~-~~~~~s~--iivTtR~~~v~~-~~----~~~~~~~l~~ 240 (826)
..+.+|||||++. .+..+|.. +...+ . ....+.+ +|.|.....-.. .+ -......+..
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 7889999999832 11122221 11111 1 1223444 344444322111 11 1234667888
Q ss_pred CCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCC-CchhHHHH
Q 003367 241 LPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNG-LPLAAKTS 287 (826)
Q Consensus 241 L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g-lPLal~~~ 287 (826)
+...+-.++++...-..... ...+...-+..+|+| .|.-++++
T Consensus 573 p~~~~R~~IL~~~~s~~~~~----~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 573 PAVTRRKEILTTIFSKNLSD----ITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred cchhHHHHHHHHHHHhhhhh----hhhHHHHHHHHhcCCccchhHHHH
Confidence 88888777776654222211 112223337777876 45444443
No 267
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.60 E-value=0.0084 Score=58.64 Aligned_cols=185 Identities=15% Similarity=0.161 Sum_probs=107.7
Q ss_pred cccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhccccc----ccCCCcEEEEEeCCC---------
Q 003367 80 VRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKV----DAHFDKRIWVCFSDP--------- 146 (826)
Q Consensus 80 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~--------- 146 (826)
+.++++....+..+... .+..-..++|+.|.||-|.+..+.++.-. +-+-+...|.+-+..
T Consensus 15 l~~~~e~~~~Lksl~~~------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSST------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhccc------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 56677777777666542 25678899999999999988877664311 111233334332221
Q ss_pred ------------CCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCce-eEEeccCCCCChhhHHHHHhhhcCCCC
Q 003367 147 ------------VDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKF-LLVLDDVWSGNPTKWEELVSTLKFGSP 213 (826)
Q Consensus 147 ------------~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~l~~~~~~~~~ 213 (826)
...+-+.++++++...... ++ .-..+.| ++|+-.+..-..+.-.++.+.......
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~q----ie--------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQ----IE--------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcc----hh--------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 1112334444443332110 00 0012333 566666644445555667777777777
Q ss_pred CcEEEEecccH--HHHhhccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCc-hhHHH
Q 003367 214 ESRILVTTRKE--DVAKMMRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLP-LAAKT 286 (826)
Q Consensus 214 ~s~iivTtR~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glP-Lal~~ 286 (826)
.+|+|+...+. -+...-...-.+.+...+++|....++..+-...-.-+ .+++.+|+++++|.- -||-+
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp----~~~l~rIa~kS~~nLRrAllm 228 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP----KELLKRIAEKSNRNLRRALLM 228 (351)
T ss_pred CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc----HHHHHHHHHHhcccHHHHHHH
Confidence 88888754432 12221112346889999999999999887755443322 788999999999854 34433
No 268
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.039 Score=62.84 Aligned_cols=183 Identities=17% Similarity=0.183 Sum_probs=104.8
Q ss_pred CccccchHHHHHH---HHHHcCCCC---CCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHH
Q 003367 78 SKVRGRDEEKKTI---IDLLLGSSS---QEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIR 151 (826)
Q Consensus 78 ~~~vGr~~~~~~l---~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 151 (826)
.++.|-|+.+++| +++|..+.. -+..-++=|.++|++|.|||-||++++-... +-|++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechH-----
Confidence 4678887665554 555544321 1234567789999999999999999998432 334444431
Q ss_pred HHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCC---------------ChhhHHHHHhhhcCCCCCc-
Q 003367 152 VAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSG---------------NPTKWEELVSTLKFGSPES- 215 (826)
Q Consensus 152 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---------------~~~~~~~l~~~~~~~~~~s- 215 (826)
+..+.+.+.- . ....+.+...-...+.+|.+|++... ....+.++...+..+..+.
T Consensus 379 ---EFvE~~~g~~--a---srvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 379 ---EFVEMFVGVG--A---SRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred ---HHHHHhcccc--h---HHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 2222222110 1 11122222233467889999987321 1223444554444443333
Q ss_pred -EEEEecccHHHHhh-----ccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhH
Q 003367 216 -RILVTTRKEDVAKM-----MRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAA 284 (826)
Q Consensus 216 -~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal 284 (826)
-++-+|+..++... -.-++.+.+..-+.....++|..++-.-... .+..++++ |+...-|.+=|.
T Consensus 451 vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~---~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD---DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred EEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC---cchhhHHH-HHhcCCCCcHHH
Confidence 33345554444322 2236788888888899999999887543332 23456666 888888888553
No 269
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.59 E-value=0.0015 Score=71.46 Aligned_cols=50 Identities=22% Similarity=0.294 Sum_probs=40.2
Q ss_pred ccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcc
Q 003367 79 KVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
+++|.++.+++|++.|..........-+++.++|++|+||||||+.+++-
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 58999999999999983332212234579999999999999999999983
No 270
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.58 E-value=0.013 Score=62.62 Aligned_cols=104 Identities=17% Similarity=0.157 Sum_probs=59.9
Q ss_pred CccEEEEEecCCCcHHHHHHHHhccccccc--CCCcEEEEEeCCCCCH--HHHHHHHHHHhcccchhhhhHHHHHHHHHH
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDA--HFDKRIWVCFSDPVDE--IRVAKAILESFRDVVSAVAAFDTLLRHIEK 179 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 179 (826)
..++|.++|..|+||||.+.+++....... +-..+..+++.. +.. ..-++..++.++.+.......+++...+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt-~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDN-YRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccC-ccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 467999999999999999999987443221 122344555443 222 223555555565543333344555555544
Q ss_pred HhcCCceeEEeccCCCCC--hhhHHHHHhhhcC
Q 003367 180 SVKGKKFLLVLDDVWSGN--PTKWEELVSTLKF 210 (826)
Q Consensus 180 ~l~~k~~LlVlDdv~~~~--~~~~~~l~~~~~~ 210 (826)
. .+.-+|++|-..... ...+..+...+..
T Consensus 252 ~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~ 282 (388)
T PRK12723 252 S--KDFDLVLVDTIGKSPKDFMKLAEMKELLNA 282 (388)
T ss_pred h--CCCCEEEEcCCCCCccCHHHHHHHHHHHHh
Confidence 3 456689999985432 2233455555443
No 271
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.57 E-value=0.024 Score=54.26 Aligned_cols=125 Identities=17% Similarity=0.170 Sum_probs=63.5
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhccc---------------chhhhhH
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDV---------------VSAVAAF 170 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~---------------~~~~~~~ 170 (826)
.+++|.|..|.|||||++.++.... ...+.+++.-. +.......+...++.. .......
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G 102 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHH
Confidence 5899999999999999999987432 12233333211 1111111111111100 0011111
Q ss_pred HHHHHHHHHHhcCCceeEEeccCCCC-ChhhHHHHHhhhcCCCCCcEEEEecccHHHHhhccccceEEc
Q 003367 171 DTLLRHIEKSVKGKKFLLVLDDVWSG-NPTKWEELVSTLKFGSPESRILVTTRKEDVAKMMRTTSMILL 238 (826)
Q Consensus 171 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~~~~~~~~s~iivTtR~~~v~~~~~~~~~~~l 238 (826)
+...-.+.+.+-.++=++++|+.... |....+.+...+.....+..||++|.+...... .++.+.+
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 22233345555667789999998432 333334444444322346678888887766542 3444444
No 272
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.57 E-value=0.03 Score=61.05 Aligned_cols=103 Identities=17% Similarity=0.139 Sum_probs=53.8
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCC-HHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcC
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVD-EIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKG 183 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 183 (826)
.++++++|++|+||||++.+++........-..+..|+...... ...-+....+.++.......+.+++...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C-
Confidence 46999999999999999999877432112223466666543211 11223333333443322222334444445432 2
Q ss_pred CceeEEeccCCCC--ChhhHHHHHhhhc
Q 003367 184 KKFLLVLDDVWSG--NPTKWEELVSTLK 209 (826)
Q Consensus 184 k~~LlVlDdv~~~--~~~~~~~l~~~~~ 209 (826)
..=+||+|..... +....+.+...+.
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~ 326 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIE 326 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 3568899976332 2233334444443
No 273
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.56 E-value=0.033 Score=53.33 Aligned_cols=119 Identities=18% Similarity=0.185 Sum_probs=64.1
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCC--CCCHHHH------HHHHHHHhcccc------hhhhhHH
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSD--PVDEIRV------AKAILESFRDVV------SAVAAFD 171 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~------~~~i~~~l~~~~------~~~~~~~ 171 (826)
.+++|+|..|.|||||++.++... ....+.+++.-.. ..+.... ..++++.++... ......+
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~ 102 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGE 102 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence 589999999999999999999743 2234444442111 1111111 111344443211 1112222
Q ss_pred HHHHHHHHHhcCCceeEEeccCCC-CChhhHHHHHhhhcCC-CC-CcEEEEecccHHHH
Q 003367 172 TLLRHIEKSVKGKKFLLVLDDVWS-GNPTKWEELVSTLKFG-SP-ESRILVTTRKEDVA 227 (826)
Q Consensus 172 ~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~~~~~-~~-~s~iivTtR~~~v~ 227 (826)
...-.+.+.+-..+-++++|+--. -|....+.+...+... .. +..||++|.+....
T Consensus 103 ~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 103 RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 233345555666788999999733 2334444444444332 12 56778887776544
No 274
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.55 E-value=0.023 Score=55.17 Aligned_cols=105 Identities=16% Similarity=0.232 Sum_probs=54.8
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHh----
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSV---- 181 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l---- 181 (826)
+++.|.|.+|.||||+++.+.......+ ..++++. ... .....+.+..+.... .+.. .+....
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g--~~v~~~a-pT~----~Aa~~L~~~~~~~a~---Ti~~---~l~~~~~~~~ 85 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAG--KRVIGLA-PTN----KAAKELREKTGIEAQ---TIHS---FLYRIPNGDD 85 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT----EEEEE-SSH----HHHHHHHHHHTS-EE---EHHH---HTTEECCEEC
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCC--CeEEEEC-CcH----HHHHHHHHhhCcchh---hHHH---HHhcCCcccc
Confidence 5889999999999999999887443322 2233332 222 122223333321111 0110 000000
Q ss_pred -----cCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccHH
Q 003367 182 -----KGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKED 225 (826)
Q Consensus 182 -----~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~~ 225 (826)
..+.-+||+|++.-.+...+..+...... .|.++|+.--..+
T Consensus 86 ~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 86 EGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp CSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred cccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 13346999999976666677777766554 5778887665443
No 275
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.0053 Score=61.34 Aligned_cols=79 Identities=15% Similarity=0.301 Sum_probs=48.6
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccc--cCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVD--AHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVK 182 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 182 (826)
-|+|.++|++|.|||+|++++++...++ ..|....-+-++. .+++.+....- ..-+..+.+.|++.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsES------gKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSES------GKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhhh------hhHHHHHHHHHHHHHh
Confidence 4789999999999999999999976554 3343333333221 22333332221 2234566667777776
Q ss_pred CCc--eeEEeccC
Q 003367 183 GKK--FLLVLDDV 193 (826)
Q Consensus 183 ~k~--~LlVlDdv 193 (826)
++. +.+.+|.|
T Consensus 247 d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 247 DRGNLVFVLIDEV 259 (423)
T ss_pred CCCcEEEEEeHHH
Confidence 655 45678888
No 276
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.48 E-value=0.0067 Score=62.80 Aligned_cols=83 Identities=23% Similarity=0.237 Sum_probs=53.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccch-----hhhhHHHHHHHHH
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVS-----AVAAFDTLLRHIE 178 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 178 (826)
.-+++-|+|++|+||||||.+++... ...-..++|++..+.++.. .+++++.... .....++....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~--~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 45799999999999999999988743 2334567898877655543 3444443211 1123344445554
Q ss_pred HHhc-CCceeEEeccC
Q 003367 179 KSVK-GKKFLLVLDDV 193 (826)
Q Consensus 179 ~~l~-~k~~LlVlDdv 193 (826)
...+ +..-+||+|.|
T Consensus 127 ~li~~~~~~lIVIDSv 142 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSV 142 (321)
T ss_pred HHhhccCCcEEEEcch
Confidence 4443 45679999998
No 277
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.48 E-value=0.018 Score=58.84 Aligned_cols=133 Identities=26% Similarity=0.394 Sum_probs=73.0
Q ss_pred cccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcc-cccccCCCcEEE----EEeCCCC-----CH
Q 003367 80 VRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNE-VKVDAHFDKRIW----VCFSDPV-----DE 149 (826)
Q Consensus 80 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~-~~~~~~f~~~~w----v~~~~~~-----~~ 149 (826)
+-+|..+..--.++|.++ .+..|.+.|.+|.|||-||.+..-. ...++.|..++- +.+.++. +.
T Consensus 226 i~prn~eQ~~ALdlLld~------dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 226 IRPRNAEQRVALDLLLDD------DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred cCcccHHHHHHHHHhcCC------CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCch
Confidence 344667777777788765 5789999999999999988776532 223344543321 2222211 11
Q ss_pred HH----HHHHHHHHhc----ccchhhhhHHHHHHHH-H---------HHhcCC---ceeEEeccCCCCChhhHHHHHhhh
Q 003367 150 IR----VAKAILESFR----DVVSAVAAFDTLLRHI-E---------KSVKGK---KFLLVLDDVWSGNPTKWEELVSTL 208 (826)
Q Consensus 150 ~~----~~~~i~~~l~----~~~~~~~~~~~~~~~l-~---------~~l~~k---~~LlVlDdv~~~~~~~~~~l~~~~ 208 (826)
++ -.+.|.+.+. ..... +...+.+ . .+++|+ +.+||+|.+++-.+.+ +...+
T Consensus 300 EeKm~PWmq~i~DnLE~L~~~~~~~----~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTphe---ikTil 372 (436)
T COG1875 300 EEKMGPWMQAIFDNLEVLFSPNEPG----DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHE---LKTIL 372 (436)
T ss_pred hhhccchHHHHHhHHHHHhcccccc----hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHH---HHHHH
Confidence 11 1222222221 11111 1111111 1 122333 4689999997766544 44445
Q ss_pred cCCCCCcEEEEecccHH
Q 003367 209 KFGSPESRILVTTRKED 225 (826)
Q Consensus 209 ~~~~~~s~iivTtR~~~ 225 (826)
...++||||+.|--..+
T Consensus 373 tR~G~GsKIVl~gd~aQ 389 (436)
T COG1875 373 TRAGEGSKIVLTGDPAQ 389 (436)
T ss_pred HhccCCCEEEEcCCHHH
Confidence 56789999999886443
No 278
>PRK06696 uridine kinase; Validated
Probab=96.48 E-value=0.0031 Score=62.77 Aligned_cols=45 Identities=24% Similarity=0.259 Sum_probs=36.1
Q ss_pred cchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhccc
Q 003367 82 GRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 82 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
.|++-+++|.+.+.... .....+|+|.|.+|.||||+|++++...
T Consensus 2 ~~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 46777888888876532 2367899999999999999999999843
No 279
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.47 E-value=0.02 Score=61.05 Aligned_cols=99 Identities=14% Similarity=0.107 Sum_probs=49.6
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCC--HHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVD--EIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVK 182 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 182 (826)
..+++++|++|+||||+|.+++........+ .+..++.. .+. ....++..++.++.......+...+.+.+. .
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~D-t~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~---~ 297 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTTD-NYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLA---R 297 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEeccc-chhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHH---h
Confidence 4689999999999999999998743222222 23333332 221 222333344444433222222233333332 2
Q ss_pred CCceeEEeccCC--CCChhhHHHHHhhh
Q 003367 183 GKKFLLVLDDVW--SGNPTKWEELVSTL 208 (826)
Q Consensus 183 ~k~~LlVlDdv~--~~~~~~~~~l~~~~ 208 (826)
...=+||+|-.. ..+..+.+.+...+
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~ 325 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFY 325 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHH
Confidence 333468999442 22334445554444
No 280
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.43 E-value=0.0077 Score=62.40 Aligned_cols=83 Identities=23% Similarity=0.217 Sum_probs=53.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccch-----hhhhHHHHHHHHH
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVS-----AVAAFDTLLRHIE 178 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 178 (826)
.-+++-|+|++|+||||||.+++... ...-..++|++..+.++.. .++.++.... .....++....+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~--~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEA--QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 45789999999999999999988743 2344568899887766643 3444443211 1122344444444
Q ss_pred HHh-cCCceeEEeccC
Q 003367 179 KSV-KGKKFLLVLDDV 193 (826)
Q Consensus 179 ~~l-~~k~~LlVlDdv 193 (826)
..+ .+.--+||+|.|
T Consensus 127 ~li~s~~~~lIVIDSv 142 (325)
T cd00983 127 SLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHhccCCCEEEEcch
Confidence 444 345678999998
No 281
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.43 E-value=0.02 Score=59.90 Aligned_cols=57 Identities=21% Similarity=0.227 Sum_probs=39.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHhccccccc----CCCcEEEEEeCCCCCHHHHHHHHHHHhc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDA----HFDKRIWVCFSDPVDEIRVAKAILESFR 161 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 161 (826)
.-.++.|+|.+|+||||||..++....... .-..++|++....++..++ .++++.++
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 457999999999999999999875322111 1135789998887777653 44455544
No 282
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.42 E-value=0.038 Score=50.59 Aligned_cols=104 Identities=17% Similarity=0.175 Sum_probs=56.2
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCc
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKK 185 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 185 (826)
.+++|+|..|.|||||++.++.... ...+.+|+.-.. .+... ......+...-.+.+.+..++
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~~~-~~lS~G~~~rv~laral~~~p 89 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIGYF-EQLSGGEKMRLALAKLLLENP 89 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEEEE-ccCCHHHHHHHHHHHHHhcCC
Confidence 5899999999999999999987432 223333332100 00000 001111222223445555677
Q ss_pred eeEEeccCCC-CChhhHHHHHhhhcCCCCCcEEEEecccHHHHh
Q 003367 186 FLLVLDDVWS-GNPTKWEELVSTLKFGSPESRILVTTRKEDVAK 228 (826)
Q Consensus 186 ~LlVlDdv~~-~~~~~~~~l~~~~~~~~~~s~iivTtR~~~v~~ 228 (826)
-++++|+.-. -|....+.+...+... +..||++|.+.....
T Consensus 90 ~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 90 NLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 8999999733 2334444454444432 235777777655443
No 283
>PRK13695 putative NTPase; Provisional
Probab=96.41 E-value=0.0067 Score=57.77 Aligned_cols=23 Identities=43% Similarity=0.514 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHhccc
Q 003367 107 IISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
.|+|+|.+|+|||||++.+++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998753
No 284
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.40 E-value=0.011 Score=62.30 Aligned_cols=135 Identities=13% Similarity=0.149 Sum_probs=73.7
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
..++|+...++++.+.+..-+. .-.-|.|+|..|+||+++|+.++..-. ..-...+.|++.... ...+...+.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~~s~--r~~~pfv~v~c~~~~-~~~~~~~lf 78 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHYLSS--RWQGPFISLNCAALN-ENLLDSELF 78 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhCC--ccCCCeEEEeCCCCC-HHHHHHHHc
Confidence 3589999999988888765543 223588999999999999999986221 111234455555432 222222222
Q ss_pred HHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCCC-----------CCcEEEEecccH
Q 003367 158 ESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGS-----------PESRILVTTRKE 224 (826)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~-----------~~s~iivTtR~~ 224 (826)
..-........ ......+. ....=.|+||||..-.......+...+..+. ...|||.||...
T Consensus 79 g~~~~~~~g~~--~~~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~ 151 (326)
T PRK11608 79 GHEAGAFTGAQ--KRHPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD 151 (326)
T ss_pred cccccccCCcc--cccCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchh
Confidence 11000000000 00001111 1223358899996666666667776664321 135888887643
No 285
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.39 E-value=0.021 Score=54.03 Aligned_cols=121 Identities=15% Similarity=0.181 Sum_probs=63.3
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc---cccccC---CC--cEEEEEeCCCCCHHHHHHHHHHHhcccch-------hhhhH
Q 003367 106 PIISILGTGGVGKTTLARLVFNE---VKVDAH---FD--KRIWVCFSDPVDEIRVAKAILESFRDVVS-------AVAAF 170 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~---~~~~~~---f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------~~~~~ 170 (826)
.+++|+|+.|.|||||.+.+..+ ..+... |. .+.|+ .+ .+.++.++.... .....
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSgG 91 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSGG 91 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCHH
Confidence 58999999999999999998632 111111 10 12232 11 344555543211 11111
Q ss_pred HHHHHHHHHHhcCC--ceeEEeccCCC-CChhhHHHHHhhhcCC-CCCcEEEEecccHHHHhhccccceEEc
Q 003367 171 DTLLRHIEKSVKGK--KFLLVLDDVWS-GNPTKWEELVSTLKFG-SPESRILVTTRKEDVAKMMRTTSMILL 238 (826)
Q Consensus 171 ~~~~~~l~~~l~~k--~~LlVlDdv~~-~~~~~~~~l~~~~~~~-~~~s~iivTtR~~~v~~~~~~~~~~~l 238 (826)
....-.+.+.+-.+ +-++++|+.-. -+....+.+...+... ..|..||++|.+...... .++++.+
T Consensus 92 q~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 92 ELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 22223344445556 67888898733 2333444444444321 246678888887766542 3445544
No 286
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.38 E-value=0.023 Score=63.28 Aligned_cols=60 Identities=20% Similarity=0.342 Sum_probs=43.2
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEE
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVC 142 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 142 (826)
.+++--.+-++++..||...-. +....+++.+.|++|+||||.++.+++.. -|+.+-|.+
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~el----g~~v~Ew~n 78 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAKEL----GFEVQEWIN 78 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHHHh----CCeeEEecC
Confidence 3455556778888888875432 23345799999999999999999999843 355555653
No 287
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.37 E-value=0.017 Score=63.20 Aligned_cols=89 Identities=16% Similarity=0.142 Sum_probs=47.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCC-CHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPV-DEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVK 182 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 182 (826)
...+|+|+|.+|+||||++.+++.....+.....+..++..... ...+.++...+.++.......+...+...+.+. .
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-R 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-c
Confidence 35799999999999999999998743222212345555442211 112223333333332222222333444444432 2
Q ss_pred CCceeEEeccCC
Q 003367 183 GKKFLLVLDDVW 194 (826)
Q Consensus 183 ~k~~LlVlDdv~ 194 (826)
..=+||+|...
T Consensus 428 -~~DLVLIDTaG 438 (559)
T PRK12727 428 -DYKLVLIDTAG 438 (559)
T ss_pred -cCCEEEecCCC
Confidence 34588889884
No 288
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.36 E-value=0.02 Score=53.83 Aligned_cols=148 Identities=15% Similarity=0.204 Sum_probs=74.3
Q ss_pred EEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhh---hHHHHHHHHHHHhcCC
Q 003367 108 ISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVA---AFDTLLRHIEKSVKGK 184 (826)
Q Consensus 108 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~---~~~~~~~~l~~~l~~k 184 (826)
+.|.|..|.|||++|.+++.. ....++++.-.+..+. ++.+.|...-........ ....+.+.+.+. . +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~-~-~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKEL-D-P 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc-C-C
Confidence 679999999999999999863 2245667766666654 344443332221211111 112233333221 2 3
Q ss_pred ceeEEeccCCC-------C-C-------hhhHHHHHhhhcCCCCCcEEEEecccHHHHhhccccceEEccCCCCchhHHH
Q 003367 185 KFLLVLDDVWS-------G-N-------PTKWEELVSTLKFGSPESRILVTTRKEDVAKMMRTTSMILLAKLPDNDCWSL 249 (826)
Q Consensus 185 ~~LlVlDdv~~-------~-~-------~~~~~~l~~~~~~~~~~s~iivTtR~~~v~~~~~~~~~~~l~~L~~~~~~~l 249 (826)
.-.|++|.+-. . + ...+..+...+. ..+..+|++|.. | -.+..+.+..-+.
T Consensus 74 ~~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~--~~~~~~viVsnE--v----------G~g~vp~~~~~r~ 139 (169)
T cd00544 74 GDVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVR--NKPGTLILVSNE--V----------GLGVVPENALGRR 139 (169)
T ss_pred CCEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHH--cCCCcEEEEECC--c----------CCCCCCCCHHHHH
Confidence 34799999711 1 0 011222333332 234556666642 1 1233455666667
Q ss_pred HHHhhhcCCCcccchhhHHHHHHHHHhcCCCch
Q 003367 250 FSQIAFSGRTTEECQKLTDIGRMIADKCNGLPL 282 (826)
Q Consensus 250 f~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPL 282 (826)
|....+. -.+.+...++++.....|+|+
T Consensus 140 f~d~lG~-----lnq~la~~ad~v~~vv~Gip~ 167 (169)
T cd00544 140 FRDELGR-----LNQRLAALADEVYLVVSGIPL 167 (169)
T ss_pred HHHHHHH-----HHHHHHHHCCEEEEEECCcce
Confidence 7665531 223334444444455567775
No 289
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.35 E-value=0.0046 Score=57.67 Aligned_cols=79 Identities=25% Similarity=0.224 Sum_probs=41.5
Q ss_pred CccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCcccccCCc--cCCCCCCCCcCCc
Q 003367 492 HLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPLLYLPK--GLERLTCLRTLSE 569 (826)
Q Consensus 492 ~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~~ 569 (826)
+.-.+||++|. +..++. |..+..|.+|.|++|++...-|.--..+++|..|.+.+|++..+-+ .+..++.|+.|.+
T Consensus 43 ~~d~iDLtdNd-l~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDND-LRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccc-hhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 44556666665 444443 5556666666666666444333333344556666666666554422 2344555555544
Q ss_pred eee
Q 003367 570 FTV 572 (826)
Q Consensus 570 ~~~ 572 (826)
.++
T Consensus 121 l~N 123 (233)
T KOG1644|consen 121 LGN 123 (233)
T ss_pred cCC
Confidence 444
No 290
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.34 E-value=0.032 Score=63.65 Aligned_cols=136 Identities=15% Similarity=0.163 Sum_probs=74.9
Q ss_pred cCCccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHH
Q 003367 76 DVSKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKA 155 (826)
Q Consensus 76 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 155 (826)
....++|....++++.+.+..-+. .-.-|.|+|..|+|||++|+.+++... ..-...+.|++..-.. ..+...
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~s~--r~~~pfv~i~c~~~~~-~~~~~~ 266 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYLSP--RAKRPFVKVNCAALSE-TLLESE 266 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHhCC--CCCCCeEEeecCCCCH-HHHHHH
Confidence 345799999999998888765432 223578999999999999999997422 1112344555554321 111111
Q ss_pred HHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCCC-----------CCcEEEEeccc
Q 003367 156 ILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGS-----------PESRILVTTRK 223 (826)
Q Consensus 156 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~-----------~~s~iivTtR~ 223 (826)
+ ++........... ...........-.|+||+|..-.......+...+..+. ...|||.||..
T Consensus 267 l---fg~~~~~~~~~~~--~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~ 340 (534)
T TIGR01817 267 L---FGHEKGAFTGAIA--QRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNR 340 (534)
T ss_pred H---cCCCCCccCCCCc--CCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCC
Confidence 1 1211000000000 00000001234468899997666666677777664322 13588887754
No 291
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.34 E-value=0.025 Score=53.81 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=20.6
Q ss_pred EEEEEecCCCcHHHHHHHHhccc
Q 003367 107 IISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
++.++|++|+||||+++.++...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998743
No 292
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.33 E-value=0.03 Score=52.56 Aligned_cols=115 Identities=17% Similarity=0.195 Sum_probs=61.8
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCC--CCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcC
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDP--VDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKG 183 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 183 (826)
.+++|.|..|.|||||.+.++... ....+.+++.-... .+..+. ....++.. .+....+...-.+.+.+-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~-~qLS~G~~qrl~laral~~ 99 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDA---RRAGIAMV-YQLSVGERQMVEIARALAR 99 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHH---HhcCeEEE-EecCHHHHHHHHHHHHHhc
Confidence 489999999999999999999732 23344555432111 111111 11111111 1122222333345555666
Q ss_pred CceeEEeccCCC-CChhhHHHHHhhhcCC-CCCcEEEEecccHHHH
Q 003367 184 KKFLLVLDDVWS-GNPTKWEELVSTLKFG-SPESRILVTTRKEDVA 227 (826)
Q Consensus 184 k~~LlVlDdv~~-~~~~~~~~l~~~~~~~-~~~s~iivTtR~~~v~ 227 (826)
++-++++|+.-. -|....+.+...+... ..|.-||++|.+....
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 788999999743 2334444444444322 2366778888776543
No 293
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.33 E-value=0.0057 Score=55.91 Aligned_cols=35 Identities=34% Similarity=0.259 Sum_probs=26.5
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEE
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVC 142 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 142 (826)
.||.|.|.+|.||||||+++..... ..-..+.+++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~--~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLF--ARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH--HTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEec
Confidence 5899999999999999999998543 3334455554
No 294
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.33 E-value=0.04 Score=57.83 Aligned_cols=90 Identities=14% Similarity=0.076 Sum_probs=53.9
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCC-CHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPV-DEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVK 182 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 182 (826)
+.++|+|+|+.|+||||++.+++.... ..-..+.+|+..... ...+-++..++.++.......+.+++.+.+...-.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~--~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL--KQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 468999999999999999999987442 222345666654322 22344555555555432222334445444443321
Q ss_pred -CCceeEEeccCCC
Q 003367 183 -GKKFLLVLDDVWS 195 (826)
Q Consensus 183 -~k~~LlVlDdv~~ 195 (826)
+..=+|++|-...
T Consensus 283 ~~~~D~VLIDTAGr 296 (407)
T PRK12726 283 VNCVDHILIDTVGR 296 (407)
T ss_pred cCCCCEEEEECCCC
Confidence 3456888898854
No 295
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.32 E-value=0.052 Score=51.15 Aligned_cols=116 Identities=13% Similarity=0.085 Sum_probs=59.4
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccc-c--CCC---cEEEEEeCCCCC--HHHHHHHHHHHhcccchhhhhHHHHHHHH
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVD-A--HFD---KRIWVCFSDPVD--EIRVAKAILESFRDVVSAVAAFDTLLRHI 177 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~-~--~f~---~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l 177 (826)
.+++|+|..|.|||||++.++...... + .++ .+.++ .+... ...+...+.-. ........+...-.+
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~l 102 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAF 102 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc---CCCCCCHHHHHHHHH
Confidence 589999999999999999998743211 1 111 12222 22211 11223332210 111122223333344
Q ss_pred HHHhcCCceeEEeccCCC-CChhhHHHHHhhhcCCCCCcEEEEecccHHHHh
Q 003367 178 EKSVKGKKFLLVLDDVWS-GNPTKWEELVSTLKFGSPESRILVTTRKEDVAK 228 (826)
Q Consensus 178 ~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~~~~~~~~s~iivTtR~~~v~~ 228 (826)
.+.+-.++=++++|+--. -|....+.+...+... +..||++|.+.....
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 555556778889998733 2333334444444332 355777777665543
No 296
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.01 Score=67.81 Aligned_cols=155 Identities=23% Similarity=0.293 Sum_probs=81.2
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCC-----CcEEEEEeCCCCCHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHF-----DKRIWVCFSDPVDEIRV 152 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-----~~~~wv~~~~~~~~~~~ 152 (826)
..++||++|++++++.|..... +- -.++|.+|||||++|.-++...- .+.- +..++. .
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K----NN--PvLiGEpGVGKTAIvEGLA~rIv-~g~VP~~L~~~~i~s-L--------- 232 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK----NN--PVLVGEPGVGKTAIVEGLAQRIV-NGDVPESLKDKRIYS-L--------- 232 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC----CC--CeEecCCCCCHHHHHHHHHHHHh-cCCCCHHHcCCEEEE-e---------
Confidence 4589999999999999976532 11 25789999999998888877431 1111 111110 0
Q ss_pred HHHHHHHhcccchhhhhHHHHHHHHHHHh-cCCceeEEeccCCCC----C----hhhHHHHHhhhcCCCCCcEEEEeccc
Q 003367 153 AKAILESFRDVVSAVAAFDTLLRHIEKSV-KGKKFLLVLDDVWSG----N----PTKWEELVSTLKFGSPESRILVTTRK 223 (826)
Q Consensus 153 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----~----~~~~~~l~~~~~~~~~~s~iivTtR~ 223 (826)
++.....+. .-..+.++..+.+.+.+ +.+++.+++|.++.- . .-+...++.+....+.--.|=.||-+
T Consensus 233 --D~g~LvAGa-kyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~ 309 (786)
T COG0542 233 --DLGSLVAGA-KYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLD 309 (786)
T ss_pred --cHHHHhccc-cccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHH
Confidence 111111111 11223333333333333 455899999998541 0 01112222222222222234445544
Q ss_pred HHHHhh-------ccccceEEccCCCCchhHHHHHHh
Q 003367 224 EDVAKM-------MRTTSMILLAKLPDNDCWSLFSQI 253 (826)
Q Consensus 224 ~~v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~ 253 (826)
+. -.. -..-+.+.+..-+.+++..+++-.
T Consensus 310 EY-Rk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 310 EY-RKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HH-HHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 32 111 112357788888999988888654
No 297
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.32 E-value=0.017 Score=67.97 Aligned_cols=135 Identities=18% Similarity=0.200 Sum_probs=74.9
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
..++|+...++++.+.+..-+. .-.-|.|+|..|+|||++|+.++.... ..-...+.+++.... ...+...+.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s~--r~~~~~v~i~c~~~~-~~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLSG--RNNRRMVKMNCAAMP-AGLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhcC--CCCCCeEEEecccCC-hhHhhhhhc
Confidence 4689999999888777654432 223588999999999999999987432 112234455555432 111222221
Q ss_pred HHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCCC-----------CCcEEEEecccH
Q 003367 158 ESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGS-----------PESRILVTTRKE 224 (826)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~-----------~~s~iivTtR~~ 224 (826)
....+..... .......+. ....=.|+||+|..-.......+...+..+. .+.|||.||...
T Consensus 449 g~~~~~~~g~--~~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 449 GHERGAFTGA--SAQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred Cccccccccc--ccchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 1111000000 000011111 1233579999997666666666766664321 345888888653
No 298
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.31 E-value=0.033 Score=50.96 Aligned_cols=21 Identities=38% Similarity=0.604 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 003367 107 IISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~ 127 (826)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999986
No 299
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.31 E-value=0.045 Score=59.56 Aligned_cols=57 Identities=23% Similarity=0.080 Sum_probs=35.8
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCC-CCHHHHHHHHHHHhcc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDP-VDEIRVAKAILESFRD 162 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~ 162 (826)
.+.+|.++|.+|+||||+|.+++.... ..-..+..|++... ....+.++.++++++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~--~~g~kV~lV~~D~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK--KKGLKVGLVAADTYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 578999999999999999999998543 22123444443321 1223445555666543
No 300
>PRK09354 recA recombinase A; Provisional
Probab=96.31 E-value=0.0099 Score=62.11 Aligned_cols=83 Identities=22% Similarity=0.238 Sum_probs=54.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccch-----hhhhHHHHHHHHH
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVS-----AVAAFDTLLRHIE 178 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 178 (826)
.-+++-|+|++|+||||||.+++... ...-..++|++....++.. .+++++.... .....++....+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~--~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 45789999999999999999998743 2344678899888776653 3444443211 1122344444454
Q ss_pred HHhc-CCceeEEeccC
Q 003367 179 KSVK-GKKFLLVLDDV 193 (826)
Q Consensus 179 ~~l~-~k~~LlVlDdv 193 (826)
..++ +..-+||+|.|
T Consensus 132 ~li~s~~~~lIVIDSv 147 (349)
T PRK09354 132 TLVRSGAVDLIVVDSV 147 (349)
T ss_pred HHhhcCCCCEEEEeCh
Confidence 4443 45669999998
No 301
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.30 E-value=0.0064 Score=57.23 Aligned_cols=80 Identities=13% Similarity=0.163 Sum_probs=43.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhH---HHHHHHHHHHhcC
Q 003367 107 IISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAF---DTLLRHIEKSVKG 183 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~---~~~~~~l~~~l~~ 183 (826)
+|.|.|.+|.||||+|..++.... . .++++.-.... ..+..+.|.............+ ..+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~--~---~~~~iat~~~~-~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG--L---QVLYIATAQPF-DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC--C---CcEeCcCCCCC-hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 689999999999999999987421 1 23344433333 3344445544333222111111 1233344443332
Q ss_pred CceeEEeccC
Q 003367 184 KKFLLVLDDV 193 (826)
Q Consensus 184 k~~LlVlDdv 193 (826)
.-++++|.+
T Consensus 77 -~~~VlID~L 85 (170)
T PRK05800 77 -GRCVLVDCL 85 (170)
T ss_pred -CCEEEehhH
Confidence 337889987
No 302
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.30 E-value=0.0013 Score=64.06 Aligned_cols=91 Identities=23% Similarity=0.203 Sum_probs=63.2
Q ss_pred hcCCCCCCcCeEEEecc--CCCCCCCCcccCccCCcEEEEecCCCC--CCCCCCCCCCccceeeccccccceEeCccccc
Q 003367 646 EALQPSPDLEKLTICDY--KSKIISPSWLMSLTELRMLNLQRCGKC--EQLPSLGRLPSLESLVVEALSSVRRVGNEFLG 721 (826)
Q Consensus 646 ~~l~~~~~L~~L~L~~~--~~~~~~p~~l~~l~~L~~L~L~~~~~~--~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~ 721 (826)
..+..+|+|++|.++.| ...+-++.....+++|++|++++|++. ..++.+..+.+|..|++.+|.........-.
T Consensus 59 ~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~- 137 (260)
T KOG2739|consen 59 TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREK- 137 (260)
T ss_pred ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHH-
Confidence 45667789999999999 554443555557799999999999875 3456788888999999998875442221110
Q ss_pred CCCCccccCccCcCCCccceeecccc
Q 003367 722 IESDDISLSSSSVVFPKLKFLEFRDM 747 (826)
Q Consensus 722 ~~~~~~~~~~~~~~~~~L~~L~l~~~ 747 (826)
.+..+|+|++|+-...
T Consensus 138 ----------vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 138 ----------VFLLLPSLKYLDGCDV 153 (260)
T ss_pred ----------HHHHhhhhcccccccc
Confidence 0225678888876554
No 303
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.023 Score=66.12 Aligned_cols=122 Identities=20% Similarity=0.271 Sum_probs=73.7
Q ss_pred ccccchHHHHHHHHHHcCCCCCCC--CCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHH
Q 003367 79 KVRGRDEEKKTIIDLLLGSSSQEK--MSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAI 156 (826)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~~~~~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 156 (826)
.++|.++.+..|.+.+........ ...-.+.+.|+.|+|||-||++++. .+-+..+..+-++.++ ...
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse------~~e-- 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSE------FQE-- 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhh------hhh--
Confidence 478889999999988876653212 2456778999999999999999998 3323334455555444 222
Q ss_pred HHHhcccchhhhhHHHHHHHHHHHhcCCce-eEEeccCCCCChhhHHHHHhhhcCC
Q 003367 157 LESFRDVVSAVAAFDTLLRHIEKSVKGKKF-LLVLDDVWSGNPTKWEELVSTLKFG 211 (826)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~l~~~~~~~ 211 (826)
...+.+.++.... .+....+.+.++.++| +|+||||..-++.....+...+..+
T Consensus 633 vskligsp~gyvG-~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 633 VSKLIGSPPGYVG-KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred hhhccCCCccccc-chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 3333332221111 1122345556666665 7888999655555555555555443
No 304
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.28 E-value=0.026 Score=59.25 Aligned_cols=58 Identities=21% Similarity=0.176 Sum_probs=41.9
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccc----cCCCcEEEEEeCCCCCHHHHHHHHHHHhcc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVD----AHFDKRIWVCFSDPVDEIRVAKAILESFRD 162 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 162 (826)
.-+++-|+|.+|+|||+|+.+++-..... ..-..++|++....++.+++.+ +++.++.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 44688899999999999999987432221 1124689999999888887655 5555543
No 305
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.28 E-value=0.035 Score=58.84 Aligned_cols=90 Identities=16% Similarity=0.151 Sum_probs=50.9
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCC-CCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDP-VDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVK 182 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 182 (826)
.-.+++++|+.|+||||++.+++.....+.....+..++.... ....+-++...+.++.......+..++...+.+ +.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-l~ 214 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-LR 214 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH-hc
Confidence 3469999999999999999999984321111234555553321 233444555555555443322222333333333 34
Q ss_pred CCceeEEeccCCC
Q 003367 183 GKKFLLVLDDVWS 195 (826)
Q Consensus 183 ~k~~LlVlDdv~~ 195 (826)
++ =+|++|....
T Consensus 215 ~~-DlVLIDTaG~ 226 (374)
T PRK14722 215 NK-HMVLIDTIGM 226 (374)
T ss_pred CC-CEEEEcCCCC
Confidence 44 5667999843
No 306
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.28 E-value=0.033 Score=58.76 Aligned_cols=57 Identities=18% Similarity=0.282 Sum_probs=40.8
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccC----CCcEEEEEeCCCCCHHHHHHHHHHHhc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAH----FDKRIWVCFSDPVDEIRVAKAILESFR 161 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~ 161 (826)
.-.++-|+|.+|+|||++|.+++........ =..++||+....++..++.+ +++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 4578999999999999999999864322111 14689999988888776544 344443
No 307
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.27 E-value=0.19 Score=51.97 Aligned_cols=152 Identities=11% Similarity=0.098 Sum_probs=90.7
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccc--------cccCCCcEEEEEe-CCCCCHHHHHHHHHHHhcccchhhhhHHHHHH
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVK--------VDAHFDKRIWVCF-SDPVDEIRVAKAILESFRDVVSAVAAFDTLLR 175 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~--------~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 175 (826)
..+..++|..|.||+++|..+++..- ...+-+...++.. .....+ +++.+
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~v---------------------d~Ir~ 76 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSK---------------------SEFLS 76 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCH---------------------HHHHH
Confidence 45666999999999999999987431 1111112223321 111122 22222
Q ss_pred HHHHH----h-cCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecc-cHHHHhh-ccccceEEccCCCCchhHH
Q 003367 176 HIEKS----V-KGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTR-KEDVAKM-MRTTSMILLAKLPDNDCWS 248 (826)
Q Consensus 176 ~l~~~----l-~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR-~~~v~~~-~~~~~~~~l~~L~~~~~~~ 248 (826)
.+... . .+++=++|+|++...+......+...+....+++.+|++|. ...+... ......+++.++++++..+
T Consensus 77 l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~ 156 (299)
T PRK07132 77 AINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILA 156 (299)
T ss_pred HHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHH
Confidence 22211 0 25777899999966666677788888888777887776554 4444433 2336789999999999887
Q ss_pred HHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHH
Q 003367 249 LFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTS 287 (826)
Q Consensus 249 lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 287 (826)
.+.... . + .+.++.++...+|.=-|+..+
T Consensus 157 ~l~~~~---~---~----~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 157 KLLSKN---K---E----KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred HHHHcC---C---C----hhHHHHHHHHcCCHHHHHHHH
Confidence 776531 1 1 234555666667633455543
No 308
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.26 E-value=0.046 Score=54.51 Aligned_cols=48 Identities=17% Similarity=0.099 Sum_probs=32.0
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHH
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAI 156 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 156 (826)
-.++.|.|..|.||||+|.+++.... ..-..+++++... +..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~--~~g~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFL--QNGYSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEEeCCC--CHHHHHHHH
Confidence 45899999999999999877766321 1124466776433 445555555
No 309
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.25 E-value=0.017 Score=56.05 Aligned_cols=80 Identities=23% Similarity=0.279 Sum_probs=42.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcccccccCCC---cEEEEEeCCCCCHHHHHHHHHHH----hcccchhhhhHHHHHHHHHH
Q 003367 107 IISILGTGGVGKTTLARLVFNEVKVDAHFD---KRIWVCFSDPVDEIRVAKAILES----FRDVVSAVAAFDTLLRHIEK 179 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~---~~~wv~~~~~~~~~~~~~~i~~~----l~~~~~~~~~~~~~~~~l~~ 179 (826)
||+|.|.+|+||||+|+++....... ... ....+.............. -.. ..-..+..-+.+.+.+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~-~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR-GIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC-TTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc-CcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHHH
Confidence 79999999999999999999844311 112 1333332222211111111 111 11123344566677777776
Q ss_pred HhcCCceeE
Q 003367 180 SVKGKKFLL 188 (826)
Q Consensus 180 ~l~~k~~Ll 188 (826)
..+++.+-+
T Consensus 79 L~~g~~i~~ 87 (194)
T PF00485_consen 79 LKNGGSIEI 87 (194)
T ss_dssp HHTTSCEEE
T ss_pred HhCCCcccc
Confidence 666665443
No 310
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.25 E-value=0.022 Score=57.56 Aligned_cols=89 Identities=21% Similarity=0.170 Sum_probs=59.8
Q ss_pred CCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcc----cchhhhhHHHHHHHHH
Q 003367 103 MSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRD----VVSAVAAFDTLLRHIE 178 (826)
Q Consensus 103 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~----~~~~~~~~~~~~~~l~ 178 (826)
+.-+++=|+|+.|.||||+|.+++-.. ...-..++|++....++++.+.+-....+.. .........++++.+.
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~a--q~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANA--QKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHh--hcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 456799999999999999999988743 3444578999999989887665433331221 1122233334455555
Q ss_pred HHhcCCceeEEeccC
Q 003367 179 KSVKGKKFLLVLDDV 193 (826)
Q Consensus 179 ~~l~~k~~LlVlDdv 193 (826)
+....+--|+|+|.|
T Consensus 136 ~~~~~~i~LvVVDSv 150 (279)
T COG0468 136 RSGAEKIDLLVVDSV 150 (279)
T ss_pred HhccCCCCEEEEecC
Confidence 555445679999998
No 311
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.25 E-value=0.049 Score=50.17 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHhccc
Q 003367 107 IISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
+|.|+|.+|.||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999843
No 312
>PRK08233 hypothetical protein; Provisional
Probab=96.24 E-value=0.013 Score=56.43 Aligned_cols=25 Identities=36% Similarity=0.481 Sum_probs=22.3
Q ss_pred ccEEEEEecCCCcHHHHHHHHhccc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
..+|+|.|.+|+||||+|+.++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999743
No 313
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.24 E-value=0.025 Score=59.71 Aligned_cols=131 Identities=15% Similarity=0.173 Sum_probs=69.5
Q ss_pred cccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHH
Q 003367 80 VRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILES 159 (826)
Q Consensus 80 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 159 (826)
++|+...++++.+.+..-+. .-.-|.|+|..|+||+++|+.++.... ..-...+.|++.... ...+...+.
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~s~--r~~~pfv~vnc~~~~-~~~l~~~lf-- 71 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYLSK--RWQGPLVKLNCAALS-ENLLDSELF-- 71 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHhcC--ccCCCeEEEeCCCCC-hHHHHHHHh--
Confidence 46888777777777665443 223488999999999999999986322 111233445555322 111111121
Q ss_pred hcccchhhhhHHH-HHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCCC-----------CCcEEEEeccc
Q 003367 160 FRDVVSAVAAFDT-LLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGS-----------PESRILVTTRK 223 (826)
Q Consensus 160 l~~~~~~~~~~~~-~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~-----------~~s~iivTtR~ 223 (826)
+........... ....+. ....-.|+||+|..-.......+...+..+. ...|||.||..
T Consensus 72 -G~~~g~~~ga~~~~~G~~~---~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~ 143 (329)
T TIGR02974 72 -GHEAGAFTGAQKRHQGRFE---RADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNA 143 (329)
T ss_pred -ccccccccCcccccCCchh---hCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechh
Confidence 111000000000 000011 2234568999996655555666666654321 23488888754
No 314
>PRK14974 cell division protein FtsY; Provisional
Probab=96.24 E-value=0.032 Score=58.46 Aligned_cols=100 Identities=19% Similarity=0.145 Sum_probs=51.3
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCH--HHHHHHHHHHhcccchh---hhhH-HHHHHHH
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDE--IRVAKAILESFRDVVSA---VAAF-DTLLRHI 177 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~---~~~~-~~~~~~l 177 (826)
++.+|+++|+.|+||||++.+++..... ..+ .++.+. .+.+.. .+-++..+..++..... ..+. ....+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~-~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKK-NGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 4689999999999999988888874332 223 233333 222222 23344555655532111 1111 1122333
Q ss_pred HHHhcCCceeEEeccCCCC--ChhhHHHHHh
Q 003367 178 EKSVKGKKFLLVLDDVWSG--NPTKWEELVS 206 (826)
Q Consensus 178 ~~~l~~k~~LlVlDdv~~~--~~~~~~~l~~ 206 (826)
........=+|++|-.... +...++.+..
T Consensus 216 ~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~ 246 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRMHTDANLMDELKK 246 (336)
T ss_pred HHHHhCCCCEEEEECCCccCCcHHHHHHHHH
Confidence 3222222338999998543 2333444433
No 315
>PTZ00494 tuzin-like protein; Provisional
Probab=96.24 E-value=0.52 Score=50.03 Aligned_cols=168 Identities=10% Similarity=0.119 Sum_probs=103.1
Q ss_pred cccCCccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHH
Q 003367 74 VIDVSKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVA 153 (826)
Q Consensus 74 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 153 (826)
...+.++|.|++|-..+.+.|.+.+. ..++++++.|.-|.||++|.+....... -..++|++.... +-+
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld~---aHPRIvV~TG~~GcGKSslcRsAvrkE~-----~paV~VDVRg~E---DtL 435 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMAP---SHPRIVALAGGSGGGRCVPCRRAVRVEG-----VALVHVDVGGTE---DTL 435 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhccC---CCCcEEEEecCCCCCchHHHHHHHHHcC-----CCeEEEEecCCc---chH
Confidence 34567799999999988888876643 5889999999999999999999887432 346678876543 456
Q ss_pred HHHHHHhcccchhh--hh---HHHHHHHHHHHhcCCceeEEeccCCCCCh-hhHHHHHhhhcCCCCCcEEEEecccHHHH
Q 003367 154 KAILESFRDVVSAV--AA---FDTLLRHIEKSVKGKKFLLVLDDVWSGNP-TKWEELVSTLKFGSPESRILVTTRKEDVA 227 (826)
Q Consensus 154 ~~i~~~l~~~~~~~--~~---~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-~~~~~l~~~~~~~~~~s~iivTtR~~~v~ 227 (826)
..+.+.++...-+. +- +.+....-+....++.-+||+-==...+. ..+.+. ..+.....-++|++----+.+.
T Consensus 436 rsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EVplESLT 514 (664)
T PTZ00494 436 RSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAVPMKALT 514 (664)
T ss_pred HHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeechHhhhc
Confidence 77778887653221 11 12222222233456666666643211111 111111 1233344567788755544332
Q ss_pred hh---ccccceEEccCCCCchhHHHHHHh
Q 003367 228 KM---MRTTSMILLAKLPDNDCWSLFSQI 253 (826)
Q Consensus 228 ~~---~~~~~~~~l~~L~~~~~~~lf~~~ 253 (826)
.. +..-..|.+..|+.++|.++-.+.
T Consensus 515 ~~n~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 515 PLNVSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred hhhccCccceeEecCCcCHHHHHHHHhcc
Confidence 21 122457889999999998887654
No 316
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.20 E-value=0.003 Score=61.49 Aligned_cols=40 Identities=25% Similarity=0.194 Sum_probs=20.2
Q ss_pred CCCCCcEEeccCC--CCCcccchhhhcccCCCeeeecCcccc
Q 003367 513 DLCNLQTLDVSNC--GNLHALPQGIAKLINLRHLINEGTPLL 552 (826)
Q Consensus 513 ~L~~L~~L~L~~~--~~~~~lp~~i~~L~~L~~L~l~~~~l~ 552 (826)
.|++|+.|+++.| +....++--..++++|++|++++|++.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 4555555555555 333334433444455555555555544
No 317
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.15 E-value=0.022 Score=54.98 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=31.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHH
Q 003367 107 IISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKA 155 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 155 (826)
++.|.|.+|+|||++|.+++.... ..-..++|++... +...+.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~--~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL--ARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH--HCCCcEEEEECCC--CHHHHHHH
Confidence 367999999999999999877432 2234577887655 34444433
No 318
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.14 E-value=0.049 Score=51.60 Aligned_cols=102 Identities=14% Similarity=0.113 Sum_probs=54.6
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEE------eCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHH
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVC------FSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEK 179 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~------~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 179 (826)
.+++|+|..|.|||||++.++.-.. ...+.+++. +.+... ....+...-.+.+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~lar 84 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIAA 84 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHHH
Confidence 4899999999999999999987322 122322221 111111 1111222333455
Q ss_pred HhcCCceeEEeccCCCC-ChhhHHHHHhhhcCC--CCCcEEEEecccHHHHh
Q 003367 180 SVKGKKFLLVLDDVWSG-NPTKWEELVSTLKFG--SPESRILVTTRKEDVAK 228 (826)
Q Consensus 180 ~l~~k~~LlVlDdv~~~-~~~~~~~l~~~~~~~--~~~s~iivTtR~~~v~~ 228 (826)
.+..++-++++|+--.. |....+.+...+... ..+.-||++|.+.....
T Consensus 85 al~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 85 ALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 55667789999997432 333333333333221 12245666666655443
No 319
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.12 E-value=0.0049 Score=55.31 Aligned_cols=25 Identities=40% Similarity=0.483 Sum_probs=21.8
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccc
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVK 130 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~ 130 (826)
--|+|.|++|+||||+++++++..+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHH
Confidence 3589999999999999999998544
No 320
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.09 E-value=0.068 Score=49.84 Aligned_cols=115 Identities=21% Similarity=0.131 Sum_probs=64.4
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCC---CCCHHHHHHHHHHHhc-----cc-----chh---hhh
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSD---PVDEIRVAKAILESFR-----DV-----VSA---VAA 169 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l~-----~~-----~~~---~~~ 169 (826)
..|-|++-.|.||||.|..++-.. ..+=..+..+-+-. ......++..+ .+. .. ... ...
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra--~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRA--LGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH--HHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHH
Confidence 478888889999999999988743 23322333333322 23334444332 111 00 000 111
Q ss_pred HHHHHHHHHHHhcC-CceeEEeccCCC---CChhhHHHHHhhhcCCCCCcEEEEecccH
Q 003367 170 FDTLLRHIEKSVKG-KKFLLVLDDVWS---GNPTKWEELVSTLKFGSPESRILVTTRKE 224 (826)
Q Consensus 170 ~~~~~~~l~~~l~~-k~~LlVlDdv~~---~~~~~~~~l~~~~~~~~~~s~iivTtR~~ 224 (826)
..+..+..++.+.. +-=|||||.+-. ...-..+++...+....++..||+|-|+.
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 22334444555544 445999999821 11234456777777677788999999975
No 321
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.09 E-value=0.055 Score=55.80 Aligned_cols=52 Identities=23% Similarity=0.244 Sum_probs=35.9
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHH
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILES 159 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 159 (826)
-.++.|.|.+|+||||+|.+++.... ..+-..++|+++.. +..++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 35889999999999999999987432 12134577888766 344555555444
No 322
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.09 E-value=0.011 Score=56.78 Aligned_cols=77 Identities=22% Similarity=0.279 Sum_probs=43.8
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHH--hcccchhhhhHHHHHHHHHHHh
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILES--FRDVVSAVAAFDTLLRHIEKSV 181 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~--l~~~~~~~~~~~~~~~~l~~~l 181 (826)
.+.+|||.|.+|.||||+|+.++... +... +.-++...-+. ..-.....+. ..-..+..-+.+-+.+.|...+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~--~~~~--~~~I~~D~YYk-~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~ 81 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL--GVEK--VVVISLDDYYK-DQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLK 81 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh--CcCc--ceEeecccccc-chhhcCHhhcCCcCccChhhhcHHHHHHHHHHHH
Confidence 56799999999999999999999843 3221 11111111000 0000001001 1122345566777888888888
Q ss_pred cCCc
Q 003367 182 KGKK 185 (826)
Q Consensus 182 ~~k~ 185 (826)
++++
T Consensus 82 ~g~~ 85 (218)
T COG0572 82 QGKP 85 (218)
T ss_pred cCCc
Confidence 8877
No 323
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.09 E-value=0.042 Score=63.72 Aligned_cols=158 Identities=18% Similarity=0.200 Sum_probs=82.3
Q ss_pred CccccchHHHHHHHHHHcCCCCC------CCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQ------EKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIR 151 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 151 (826)
.++.|.+...+++.+.+...... +..-.+-|.|+|++|.|||++|+.++... ...| +.++.+.
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~--~~~f---~~is~~~------ 220 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA--KVPF---FTISGSD------ 220 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCCE---EEEehHH------
Confidence 35778777776665544321100 01123458999999999999999999843 2222 2222221
Q ss_pred HHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCC----------hhhHHH----HHhhhcCC--CCCc
Q 003367 152 VAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGN----------PTKWEE----LVSTLKFG--SPES 215 (826)
Q Consensus 152 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~----l~~~~~~~--~~~s 215 (826)
+. ....+. ....+...+.......+.+|++|+++.-. ...++. ++..+... ..+.
T Consensus 221 ~~----~~~~g~-----~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~v 291 (644)
T PRK10733 221 FV----EMFVGV-----GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 291 (644)
T ss_pred hH----Hhhhcc-----cHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCe
Confidence 11 111110 11122222333334578899999984310 112222 22222221 2344
Q ss_pred EEEEecccHHHHhh--c---cccceEEccCCCCchhHHHHHHhhh
Q 003367 216 RILVTTRKEDVAKM--M---RTTSMILLAKLPDNDCWSLFSQIAF 255 (826)
Q Consensus 216 ~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~a~ 255 (826)
-+|.||...+.... . .-++.+.+...+.++-.+++..+..
T Consensus 292 ivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 292 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred eEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 55667776654322 1 2256778888887888888877653
No 324
>PTZ00035 Rad51 protein; Provisional
Probab=96.06 E-value=0.049 Score=57.50 Aligned_cols=57 Identities=19% Similarity=0.234 Sum_probs=39.2
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccc----cCCCcEEEEEeCCCCCHHHHHHHHHHHhc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVD----AHFDKRIWVCFSDPVDEIRVAKAILESFR 161 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 161 (826)
.-.++.|+|..|+|||||+..++-..... ..-..++|++....++.+++ .++++.++
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g 177 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFG 177 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhC
Confidence 45789999999999999999987533211 12235679988777777663 44455544
No 325
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.07 Score=58.25 Aligned_cols=155 Identities=16% Similarity=0.302 Sum_probs=87.1
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCC
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGK 184 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 184 (826)
+.=|.+||++|.|||-||++|++ +.+-.| +++-.+ +++... .+. ....+...+++.-..-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGP----ELlNkY---VGE------SErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGP----ELLNKY---VGE------SERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecCH----HHHHHH---hhh------HHHHHHHHHHHhhcCC
Confidence 45688999999999999999999 433444 343332 111111 111 1123444455555678
Q ss_pred ceeEEeccCCC-----CC------hhhHHHHHhhhcC--CCCCcEEEEecccHHHHhh--c---cccceEEccCCCCchh
Q 003367 185 KFLLVLDDVWS-----GN------PTKWEELVSTLKF--GSPESRILVTTRKEDVAKM--M---RTTSMILLAKLPDNDC 246 (826)
Q Consensus 185 ~~LlVlDdv~~-----~~------~~~~~~l~~~~~~--~~~~s~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~ 246 (826)
+++|.||.++. .+ .....+++.-+.. ...|.-||-.|..+++... + .-+...-|+.-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 99999999932 11 1122333333432 2456667766665554322 1 2245666777778888
Q ss_pred HHHHHHhhhcCCCc-ccchhhHHHHHHHHHhcCCCc
Q 003367 247 WSLFSQIAFSGRTT-EECQKLTDIGRMIADKCNGLP 281 (826)
Q Consensus 247 ~~lf~~~a~~~~~~-~~~~~~~~~~~~i~~~~~glP 281 (826)
.++++..+-....+ ..+-++.+++.. .+|.|.-
T Consensus 685 ~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 685 VAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 88888776431222 233455665542 3555654
No 326
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.05 E-value=0.035 Score=62.73 Aligned_cols=135 Identities=17% Similarity=0.216 Sum_probs=76.5
Q ss_pred CCccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHH
Q 003367 77 VSKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAI 156 (826)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 156 (826)
...++|+...++++.+.+..-+. .-.-|.|+|..|+|||++|+.+++... ..-...+.|++..-.+ ..+...+
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~s~--r~~~p~v~v~c~~~~~-~~~e~~l 258 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAASP--RADKPLVYLNCAALPE-SLAESEL 258 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC--cCCCCeEEEEcccCCh-HHHHHHh
Confidence 45699999999998888876543 334588999999999999999997422 1222445566655332 1111122
Q ss_pred HHHhcccchhhhh-HHHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCCC-----------CCcEEEEecccH
Q 003367 157 LESFRDVVSAVAA-FDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGS-----------PESRILVTTRKE 224 (826)
Q Consensus 157 ~~~l~~~~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~-----------~~s~iivTtR~~ 224 (826)
++........ .......+. ....=.|+||+|..-.......+...+..+. ...|||.||...
T Consensus 259 ---fG~~~g~~~ga~~~~~g~~~---~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 332 (509)
T PRK05022 259 ---FGHVKGAFTGAISNRSGKFE---LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRD 332 (509)
T ss_pred ---cCccccccCCCcccCCcchh---hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCC
Confidence 1211100000 000000011 1122347899997666666667777664321 245888888643
No 327
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.04 E-value=0.00061 Score=77.19 Aligned_cols=62 Identities=32% Similarity=0.339 Sum_probs=32.5
Q ss_pred cCCCCcEEecccccccccccccc--ccccccCCCCccEEEccCC-CCccccc----hhhcCCCCCcEEeccCCC
Q 003367 460 RLTCLRTLCLRCHERHFCLSIAR--LPRNIKKLKHLRYLNLSNN-DAIYELP----EALCDLCNLQTLDVSNCG 526 (826)
Q Consensus 460 ~l~~Lr~L~L~~~~~~~~~~~~~--lp~~i~~l~~L~~L~Ls~~-~~~~~lp----~~i~~L~~L~~L~L~~~~ 526 (826)
.+++|+.|.+. .+..+.. +-.....+++|+.|++++| ......+ .....+++|+.|++++|.
T Consensus 186 ~~~~L~~l~l~-----~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 186 SCPLLKRLSLS-----GCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG 254 (482)
T ss_pred hCchhhHhhhc-----ccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh
Confidence 36667777666 3333332 2233456677777777662 2122111 223345667777777666
No 328
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.03 E-value=0.11 Score=56.00 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=22.9
Q ss_pred CccEEEEEecCCCcHHHHHHHHhccc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
.+.+|.++|..|+||||+|.+++...
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998743
No 329
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.03 E-value=0.031 Score=55.39 Aligned_cols=123 Identities=17% Similarity=0.154 Sum_probs=66.4
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCC-----CCCHHHHHHHHHHHhcccch-------hhhhHHH
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSD-----PVDEIRVAKAILESFRDVVS-------AVAAFDT 172 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~-------~~~~~~~ 172 (826)
-.+++|+|..|.||||+|+.+..=. ..-.+.++..-.+ .....+-..++++.++.... .....+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~---~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLE---EPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCc---CCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 3589999999999999999999722 2223333333211 11233345555555553211 1112222
Q ss_pred HHHHHHHHhcCCceeEEeccCCCC-ChhhHHHHHhhhcC--CCCCcEEEEecccHHHHhhc
Q 003367 173 LLRHIEKSVKGKKFLLVLDDVWSG-NPTKWEELVSTLKF--GSPESRILVTTRKEDVAKMM 230 (826)
Q Consensus 173 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~~~~--~~~~s~iivTtR~~~v~~~~ 230 (826)
-.-.+.+.+.-++-++|.|..-+. |...-.++...+.. ...|-..+..|-+-.+...+
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhh
Confidence 233466777888999999997331 11111223332221 22355566666666665543
No 330
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.02 E-value=0.041 Score=57.95 Aligned_cols=58 Identities=21% Similarity=0.202 Sum_probs=41.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHhccccccc----CCCcEEEEEeCCCCCHHHHHHHHHHHhcc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDA----HFDKRIWVCFSDPVDEIRVAKAILESFRD 162 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 162 (826)
.-.++-|+|.+|+|||++|..++-...... .-..++|++....++.+++. +|++.++.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence 456889999999999999998875322111 11268999999988887764 45665543
No 331
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.02 E-value=0.065 Score=50.72 Aligned_cols=117 Identities=19% Similarity=0.074 Sum_probs=66.4
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCC---CCHHHHHHHHH--HH--hccc-----ch---hhhhH
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDP---VDEIRVAKAIL--ES--FRDV-----VS---AVAAF 170 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~--~~--l~~~-----~~---~~~~~ 170 (826)
..|-|+|-.|-||||.|..++-.. ..+=..+..+-+-.. .....+++.+- .. .+.. .. .....
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra--~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~ 100 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRA--VGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAA 100 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHH--HHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHH
Confidence 578999999999999999988743 233233444444332 23334443321 00 0000 00 11122
Q ss_pred HHHHHHHHHHhc-CCceeEEeccCCC---CChhhHHHHHhhhcCCCCCcEEEEecccH
Q 003367 171 DTLLRHIEKSVK-GKKFLLVLDDVWS---GNPTKWEELVSTLKFGSPESRILVTTRKE 224 (826)
Q Consensus 171 ~~~~~~l~~~l~-~k~~LlVlDdv~~---~~~~~~~~l~~~~~~~~~~s~iivTtR~~ 224 (826)
.+..+..++.+. ++-=|||||.+-. ...-..+++...+.....+..||+|-|..
T Consensus 101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 233444455554 4455999999821 11234567777777777788999999975
No 332
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.02 E-value=0.026 Score=59.89 Aligned_cols=113 Identities=19% Similarity=0.205 Sum_probs=67.1
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
..++|+++....+...+.... -+.+.|.+|+|||+||+.++... . -..++|.+.......++.....
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~~--------~vll~G~PG~gKT~la~~lA~~l--~---~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 24 KVVVGDEEVIELALLALLAGG--------HVLLEGPPGVGKTLLARALARAL--G---LPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred CeeeccHHHHHHHHHHHHcCC--------CEEEECCCCccHHHHHHHHHHHh--C---CCeEEEecCCCCCHHHhcCchh
Confidence 348898888888877776543 48899999999999999999833 2 2345667776666655543332
Q ss_pred HHhcccchhhhhHHHHHHHHHH-HhcCCceeEEeccCCCCChhhHHHHHhhhc
Q 003367 158 ESFRDVVSAVAAFDTLLRHIEK-SVKGKKFLLVLDDVWSGNPTKWEELVSTLK 209 (826)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~ 209 (826)
-......... ...... ....-+.++.+|.++...+..-..+...+.
T Consensus 91 ~~~~~~~~~~------~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~ 137 (329)
T COG0714 91 YAALLLEPGE------FRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALE 137 (329)
T ss_pred HhhhhccCCe------EEEecCCcccccceEEEEeccccCCHHHHHHHHHHHh
Confidence 2111000000 000000 001111599999998766665566666554
No 333
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.99 E-value=0.058 Score=52.09 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=22.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
..++|+|+|++|+||||+|+.++..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999873
No 334
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.99 E-value=0.0061 Score=70.40 Aligned_cols=88 Identities=30% Similarity=0.282 Sum_probs=49.3
Q ss_pred hhccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCcc-ccchhhcCCCCCcEEeccCCCCCcccchhh
Q 003367 457 LFDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIY-ELPEALCDLCNLQTLDVSNCGNLHALPQGI 535 (826)
Q Consensus 457 ~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i 535 (826)
.+.++++|+.||++ ++ .+..+ .++++|++|+.|.+.+=.+.. .--..+.+|++|++||+|...... .+..+
T Consensus 168 lc~sFpNL~sLDIS-----~T-nI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii 239 (699)
T KOG3665|consen 168 LCASFPNLRSLDIS-----GT-NISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND-DTKII 239 (699)
T ss_pred HhhccCccceeecC-----CC-CccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccccc-chHHH
Confidence 45667777777777 44 44444 456677777777776544221 111235667777777777654222 12111
Q ss_pred -------hcccCCCeeeecCcccc
Q 003367 536 -------AKLINLRHLINEGTPLL 552 (826)
Q Consensus 536 -------~~L~~L~~L~l~~~~l~ 552 (826)
..|++||.||.|++.+.
T Consensus 240 ~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 240 EQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HHHHHhcccCccccEEecCCcchh
Confidence 23667777777766544
No 335
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.99 E-value=0.057 Score=50.13 Aligned_cols=62 Identities=15% Similarity=0.204 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhcCCceeEEeccCCC--CChhhHHHHHhhhcCCCCCcEEEEecccHHHHhhcc
Q 003367 170 FDTLLRHIEKSVKGKKFLLVLDDVWS--GNPTKWEELVSTLKFGSPESRILVTTRKEDVAKMMR 231 (826)
Q Consensus 170 ~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~~l~~~~~~~~~~s~iivTtR~~~v~~~~~ 231 (826)
.++-.-.|.+.+-+++-+++=|.--. +..-.|+-+.-.-.-...|.-|+++|-+..+...+.
T Consensus 141 GEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 141 GEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred hHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 34444556666778888999987422 223344433322223567899999999988776653
No 336
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.98 E-value=0.046 Score=54.93 Aligned_cols=48 Identities=15% Similarity=0.274 Sum_probs=34.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHH
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKA 155 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 155 (826)
.-+++.|.|.+|+|||++|.++.... -..-..++||+... +..++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~--~~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG--LQMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH--HHcCCcEEEEEeeC--CHHHHHHH
Confidence 45789999999999999999987632 12345688888765 44455554
No 337
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.98 E-value=0.022 Score=56.31 Aligned_cols=23 Identities=43% Similarity=0.569 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHhccc
Q 003367 107 IISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
+|+|.|..|+||||+|+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999843
No 338
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.98 E-value=0.12 Score=52.54 Aligned_cols=116 Identities=16% Similarity=0.115 Sum_probs=61.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccc--------hhhhhHHHHHH
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVV--------SAVAAFDTLLR 175 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--------~~~~~~~~~~~ 175 (826)
..+-++|+|..|.|||||.+.++.... ...+.+++.-..- ...+-..+++.....-. ...........
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~~v-~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~ 185 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGKKV-GIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEG 185 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCEEe-ecchhHHHHHHHhcccccccccccccccccchHHHH
Confidence 356799999999999999999998432 2233333321110 00011122322221100 00011111111
Q ss_pred HHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccHHHHh
Q 003367 176 HIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKEDVAK 228 (826)
Q Consensus 176 ~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~~v~~ 228 (826)
...-.....+=++|+|.+ ...+.+..+...+. .|..+|+||-+..+..
T Consensus 186 ~~~~i~~~~P~villDE~--~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 186 MMMLIRSMSPDVIVVDEI--GREEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred HHHHHHhCCCCEEEEeCC--CcHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 111222257889999999 44555666655553 4778999998766543
No 339
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.016 Score=60.32 Aligned_cols=81 Identities=22% Similarity=0.276 Sum_probs=53.3
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccch-----hhhhHHHHHHHHHH
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVS-----AVAAFDTLLRHIEK 179 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 179 (826)
-.+|.|-|-+|||||||..+++.+.. ..- .+.||+-.+.. .+ .+--++.++.... ...+++++.+.+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA--~~~-~vLYVsGEES~--~Q-iklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLA--KRG-KVLYVSGEESL--QQ-IKLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHH--hcC-cEEEEeCCcCH--HH-HHHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 46899999999999999999998554 333 67777655432 22 2333455553221 23455555555554
Q ss_pred HhcCCceeEEeccCC
Q 003367 180 SVKGKKFLLVLDDVW 194 (826)
Q Consensus 180 ~l~~k~~LlVlDdv~ 194 (826)
.++-++|+|-++
T Consensus 167 ---~~p~lvVIDSIQ 178 (456)
T COG1066 167 ---EKPDLVVIDSIQ 178 (456)
T ss_pred ---cCCCEEEEeccc
Confidence 688899999984
No 340
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.95 E-value=0.056 Score=51.37 Aligned_cols=127 Identities=17% Similarity=0.227 Sum_probs=61.8
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCC--CCCHHHHHHHHHHHhcccc----hh-----hhhHHHHH
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSD--PVDEIRVAKAILESFRDVV----SA-----VAAFDTLL 174 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~----~~-----~~~~~~~~ 174 (826)
.+++|+|..|.|||||++.++.... ...+.+++.-.. ..........+. .+.... .. ....+...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~~~lLS~G~~qr 104 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLR---PTSGRVRLDGADISQWDPNELGDHVG-YLPQDDELFSGSIAENILSGGQRQR 104 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEEcccCCHHHHHhheE-EECCCCccccCcHHHHCcCHHHHHH
Confidence 4899999999999999999997322 223333322110 001111111100 000000 00 11112223
Q ss_pred HHHHHHhcCCceeEEeccCCC-CChhhHHHHHhhhcC-CCCCcEEEEecccHHHHhhccccceEEc
Q 003367 175 RHIEKSVKGKKFLLVLDDVWS-GNPTKWEELVSTLKF-GSPESRILVTTRKEDVAKMMRTTSMILL 238 (826)
Q Consensus 175 ~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~~~~-~~~~s~iivTtR~~~v~~~~~~~~~~~l 238 (826)
-.+.+.+-.++-++++|+.-. -|......+...+.. ...|..||++|.+...... .++++.+
T Consensus 105 v~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~--~d~v~~l 168 (173)
T cd03246 105 LGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLAS--ADRILVL 168 (173)
T ss_pred HHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 334455556777899999743 233333334333332 1236678888877665542 3444443
No 341
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.95 E-value=0.047 Score=52.01 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=22.4
Q ss_pred ccEEEEEecCCCcHHHHHHHHhccc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
..+|+|+|.+|+||||+|++++...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4599999999999999999999844
No 342
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.084 Score=59.70 Aligned_cols=158 Identities=17% Similarity=0.179 Sum_probs=86.0
Q ss_pred CccccchHHHHHHHHHHc---CCCC----CCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHH
Q 003367 78 SKVRGRDEEKKTIIDLLL---GSSS----QEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEI 150 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~---~~~~----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 150 (826)
.++.|.+...+.+.+... .... .+-...+.|.++|++|.|||.||+++++. .+..|- .+...
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~--~~~~fi-----~v~~~---- 310 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALE--SRSRFI-----SVKGS---- 310 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhh--CCCeEE-----EeeCH----
Confidence 345666666555544332 2111 01245668999999999999999999993 233332 22221
Q ss_pred HHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCC-----C-C-----hhhHHHHHhhhcCC--CCCcEE
Q 003367 151 RVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWS-----G-N-----PTKWEELVSTLKFG--SPESRI 217 (826)
Q Consensus 151 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-----~-~-----~~~~~~l~~~~~~~--~~~s~i 217 (826)
.+....-+ .....+.+.+....+..+..|.+|++.. . + ......++..+... ..+..|
T Consensus 311 ----~l~sk~vG-----esek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~v 381 (494)
T COG0464 311 ----ELLSKWVG-----ESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLV 381 (494)
T ss_pred ----HHhccccc-----hHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEE
Confidence 11111111 0112233334444467899999999932 1 1 02223333344322 233345
Q ss_pred EEecccHHHHhh-----ccccceEEccCCCCchhHHHHHHhhh
Q 003367 218 LVTTRKEDVAKM-----MRTTSMILLAKLPDNDCWSLFSQIAF 255 (826)
Q Consensus 218 ivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~a~ 255 (826)
|-||..+..... ..-...+.+..-+.++..+.|..+..
T Consensus 382 i~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 382 IAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred EecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 555554433221 12256788888899999999998864
No 343
>PRK10867 signal recognition particle protein; Provisional
Probab=95.93 E-value=0.097 Score=56.89 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=22.9
Q ss_pred CCccEEEEEecCCCcHHHHHHHHhccc
Q 003367 103 MSLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 103 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
..+.+|.++|.+|+||||.|.+++...
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 347899999999999999888888743
No 344
>PRK07667 uridine kinase; Provisional
Probab=95.93 E-value=0.014 Score=56.64 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=29.8
Q ss_pred HHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhccc
Q 003367 87 KKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 87 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
.+.|.+.+.... +...+|+|.|.+|.||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 355666665443 245899999999999999999999843
No 345
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.92 E-value=0.086 Score=57.29 Aligned_cols=42 Identities=24% Similarity=0.352 Sum_probs=29.0
Q ss_pred HHHHHHHHcCCCCC---CCCCccEEEEEecCCCcHHHHHHHHhcc
Q 003367 87 KKTIIDLLLGSSSQ---EKMSLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 87 ~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+++.+.+...... ....+.+|.++|.+|+||||.|.+++..
T Consensus 78 ~~eL~~~l~~~~~~~~~~~~~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 78 HEELVAILGGENASLNLAKKPPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred HHHHHHHhCCCCcccccCCCCCEEEEEECCCCCcHHHHHHHHHHH
Confidence 34555655432210 1234679999999999999999998874
No 346
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.92 E-value=0.064 Score=56.46 Aligned_cols=57 Identities=18% Similarity=0.262 Sum_probs=40.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHhccccccc----CCCcEEEEEeCCCCCHHHHHHHHHHHhc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDA----HFDKRIWVCFSDPVDEIRVAKAILESFR 161 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 161 (826)
.-+++-|+|.+|+||||+|.+++....... .=..++||+....++..++.+ +++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 457899999999999999999986433211 113689999988888776543 444443
No 347
>PRK00625 shikimate kinase; Provisional
Probab=95.92 E-value=0.066 Score=50.52 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 003367 107 IISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.|.|+||.|+||||+|+.+++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999884
No 348
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.91 E-value=0.054 Score=52.07 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 003367 107 IISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
||.|+|++|+||||+|+.++..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999973
No 349
>PRK05439 pantothenate kinase; Provisional
Probab=95.90 E-value=0.041 Score=56.83 Aligned_cols=25 Identities=44% Similarity=0.453 Sum_probs=22.9
Q ss_pred CCccEEEEEecCCCcHHHHHHHHhc
Q 003367 103 MSLPIISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 103 ~~~~vv~I~G~gGiGKTtLa~~v~~ 127 (826)
...-+|+|.|.+|+||||+|+.+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999987
No 350
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.88 E-value=0.082 Score=50.21 Aligned_cols=117 Identities=21% Similarity=0.198 Sum_probs=60.0
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcc---c---ch---h-----hhhHH
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRD---V---VS---A-----VAAFD 171 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~---~---~~---~-----~~~~~ 171 (826)
.+++|+|..|.|||||++.++.... ...+.+++.-....+.. ..+...++. . .. . ....+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~ 100 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGGM 100 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHHH
Confidence 4899999999999999999987432 22333333211000000 001111100 0 00 0 11112
Q ss_pred HHHHHHHHHhcCCceeEEeccCCC-CChhhHHHHHhhhcCC-CCCcEEEEecccHHHHh
Q 003367 172 TLLRHIEKSVKGKKFLLVLDDVWS-GNPTKWEELVSTLKFG-SPESRILVTTRKEDVAK 228 (826)
Q Consensus 172 ~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~~~~~-~~~s~iivTtR~~~v~~ 228 (826)
...-.+.+.+..++=++++|+.-. -|....+.+...+... ..|..||++|.+.....
T Consensus 101 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 101 KQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 223345566667888999999733 2333334444444321 23567888888776544
No 351
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.85 E-value=0.022 Score=55.32 Aligned_cols=41 Identities=27% Similarity=0.446 Sum_probs=28.4
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCC--------CcEEEEEeCCC
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHF--------DKRIWVCFSDP 146 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~~~~ 146 (826)
.++.|+|.+|+||||++.+++........| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 488999999999999999998765432222 35778777665
No 352
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.84 E-value=0.0063 Score=54.57 Aligned_cols=21 Identities=43% Similarity=0.588 Sum_probs=19.7
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 003367 108 ISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 108 v~I~G~gGiGKTtLa~~v~~~ 128 (826)
|+|.|..|+||||+|+++...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999984
No 353
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.83 E-value=0.025 Score=55.05 Aligned_cols=110 Identities=10% Similarity=0.179 Sum_probs=57.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCce
Q 003367 107 IISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKF 186 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~ 186 (826)
+|.|+|+.|.||||++..+.... .......++. +.++.. .........+.... ...+.....+.++..+...+=
T Consensus 3 lilI~GptGSGKTTll~~ll~~~--~~~~~~~i~t-~e~~~E--~~~~~~~~~i~q~~-vg~~~~~~~~~i~~aLr~~pd 76 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYI--NKNKTHHILT-IEDPIE--FVHESKRSLINQRE-VGLDTLSFENALKAALRQDPD 76 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh--hhcCCcEEEE-EcCCcc--ccccCccceeeecc-cCCCccCHHHHHHHHhcCCcC
Confidence 78999999999999999887733 2223333332 222211 00000000000000 001112344556676766777
Q ss_pred eEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccHHHH
Q 003367 187 LLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKEDVA 227 (826)
Q Consensus 187 LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~~v~ 227 (826)
.+++|++ .+.+.+....... ..|-.++.|+-...+.
T Consensus 77 ~ii~gEi--rd~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 77 VILVGEM--RDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred EEEEcCC--CCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 9999999 4444444444333 2355577777655443
No 354
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.81 E-value=0.021 Score=51.43 Aligned_cols=44 Identities=25% Similarity=0.303 Sum_probs=32.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhccc
Q 003367 107 IISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDV 163 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 163 (826)
+|.|.|.+|.||||+|+.++++.... +|+ .-.++.+|++..+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~vs------aG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LVS------AGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------eee------ccHHHHHHHHHcCCC
Confidence 68999999999999999999854321 122 235788888887754
No 355
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.80 E-value=0.043 Score=59.35 Aligned_cols=84 Identities=19% Similarity=0.164 Sum_probs=47.4
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcc---------cchhhh--hHH--
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRD---------VVSAVA--AFD-- 171 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~---------~~~~~~--~~~-- 171 (826)
-..++|+|..|+|||||++.++.... ....+++..-....++.++.......... ..+... ...
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 35799999999999999999986322 22344444333344555444433332211 011110 011
Q ss_pred --HHHHHHHHHhcCCceeEEeccC
Q 003367 172 --TLLRHIEKSVKGKKFLLVLDDV 193 (826)
Q Consensus 172 --~~~~~l~~~l~~k~~LlVlDdv 193 (826)
.+.+.++. +++.+|+++||+
T Consensus 242 a~~iAEyfrd--~G~~Vll~~Dsl 263 (450)
T PRK06002 242 ATAIAEYFRD--RGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHH--cCCCEEEeccch
Confidence 22333333 589999999999
No 356
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.78 E-value=0.031 Score=57.09 Aligned_cols=90 Identities=18% Similarity=0.131 Sum_probs=49.4
Q ss_pred CCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCH--HHHHHHHHHHhcccc---hhhhhH-HHHHHH
Q 003367 103 MSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDE--IRVAKAILESFRDVV---SAVAAF-DTLLRH 176 (826)
Q Consensus 103 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~---~~~~~~-~~~~~~ 176 (826)
...++|.++|++|+||||++.+++.... ..-..+.+++... +.. .+-++..++..+... ....+. ....+.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~--~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLK--KQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 3568999999999999999999987442 3223455555432 322 223333444444221 001111 222333
Q ss_pred HHHHhcCCceeEEeccCCC
Q 003367 177 IEKSVKGKKFLLVLDDVWS 195 (826)
Q Consensus 177 l~~~l~~k~~LlVlDdv~~ 195 (826)
+.....+..=++|+|-.-.
T Consensus 147 l~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHHCCCCEEEEeCCCC
Confidence 4443444456888898743
No 357
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.77 E-value=0.00041 Score=67.46 Aligned_cols=84 Identities=18% Similarity=0.135 Sum_probs=53.8
Q ss_pred CCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCCCCCCCCccceeeccccccceEeCcccccCCCCccccC
Q 003367 651 SPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLPSLGRLPSLESLVVEALSSVRRVGNEFLGIESDDISLS 730 (826)
Q Consensus 651 ~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 730 (826)
+.+.++|+..||.+..+ .....++.|+.|.|+-|++. .+..+..+.+|+.|+|..+. +..++.-+.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~pl~rCtrLkElYLRkN~-I~sldEL~Y---------- 83 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLAPLQRCTRLKELYLRKNC-IESLDELEY---------- 83 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cchhHHHHHHHHHHHHHhcc-cccHHHHHH----------
Confidence 45778888888887764 34557888888888888775 45566677788888876433 222221111
Q ss_pred ccCcCCCccceeeccccccc
Q 003367 731 SSSVVFPKLKFLEFRDMDEW 750 (826)
Q Consensus 731 ~~~~~~~~L~~L~l~~~~~l 750 (826)
+.++|+|+.|.|..|+.-
T Consensus 84 --LknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 84 --LKNLPSLRTLWLDENPCC 101 (388)
T ss_pred --HhcCchhhhHhhccCCcc
Confidence 235666666666666543
No 358
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.76 E-value=0.15 Score=49.82 Aligned_cols=69 Identities=14% Similarity=0.142 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHhcCCceeEEeccCCC-CChhhHHHHHhhhcCC--CCCcEEEEecccHHHHhhccccceEEcc
Q 003367 169 AFDTLLRHIEKSVKGKKFLLVLDDVWS-GNPTKWEELVSTLKFG--SPESRILVTTRKEDVAKMMRTTSMILLA 239 (826)
Q Consensus 169 ~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~~~~~--~~~s~iivTtR~~~v~~~~~~~~~~~l~ 239 (826)
..++-.-.+.+.+-..+-+|+-|+--. -|...-+.+...+... ..|.-||+.|-++.++..+ ++.+.+.
T Consensus 145 GGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~--dr~i~l~ 216 (226)
T COG1136 145 GGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYA--DRVIELK 216 (226)
T ss_pred HHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhC--CEEEEEe
Confidence 334445567777778888999998522 2333334444444432 3477899999999998854 3444443
No 359
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.76 E-value=0.072 Score=53.67 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 003367 107 IISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
+..|+|++|+|||+||..++-.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 5679999999999999999864
No 360
>PTZ00301 uridine kinase; Provisional
Probab=95.74 E-value=0.017 Score=56.40 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=21.6
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
..+|+|.|.+|.||||||+.+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~ 26 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSE 26 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 361
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.28 Score=55.38 Aligned_cols=151 Identities=18% Similarity=0.212 Sum_probs=85.8
Q ss_pred CccccchHHHHHHHHHHcCCCC------CCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSS------QEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIR 151 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 151 (826)
+++-|-++.+.+|.+-+.-+-. .+-....=|.++|++|.|||-+|++|+.... .-|++|-.+
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs-------L~FlSVKGP----- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS-------LNFLSVKGP----- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce-------eeEEeecCH-----
Confidence 4678899999999887654311 0112244688999999999999999998332 224454432
Q ss_pred HHHHHHHH-hcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCC---------ChhhHHHH----HhhhcC----CCC
Q 003367 152 VAKAILES-FRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSG---------NPTKWEEL----VSTLKF----GSP 213 (826)
Q Consensus 152 ~~~~i~~~-l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---------~~~~~~~l----~~~~~~----~~~ 213 (826)
+++.. ++. ..+.+.+.+.+.-..++++|.||.+++- +-...+.+ +..+.. ...
T Consensus 740 ---ELLNMYVGq------SE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~ 810 (953)
T KOG0736|consen 740 ---ELLNMYVGQ------SEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQ 810 (953)
T ss_pred ---HHHHHHhcc------hHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCC
Confidence 12221 121 1233344455555679999999999541 11223333 333332 223
Q ss_pred CcEEEEecccHHHHhh-----ccccceEEccCCCCchhHHH
Q 003367 214 ESRILVTTRKEDVAKM-----MRTTSMILLAKLPDNDCWSL 249 (826)
Q Consensus 214 ~s~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~l 249 (826)
+--||=+|..+++... ..-++.+.|++=+++++..=
T Consensus 811 ~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~ 851 (953)
T KOG0736|consen 811 DVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLR 851 (953)
T ss_pred ceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHH
Confidence 4445555555544332 22356677777777666543
No 362
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.72 E-value=0.029 Score=58.01 Aligned_cols=83 Identities=24% Similarity=0.215 Sum_probs=50.3
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchh-----hhhHHHHHHHHH
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSA-----VAAFDTLLRHIE 178 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 178 (826)
.-+++-|+|..|+||||||..+.... ...-..++|++....++.. .++.++.+... ....++......
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~--q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEA--QKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhh--hcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHH
Confidence 45799999999999999999998743 3444668899987766553 34444432211 122344445555
Q ss_pred HHhc-CCceeEEeccC
Q 003367 179 KSVK-GKKFLLVLDDV 193 (826)
Q Consensus 179 ~~l~-~k~~LlVlDdv 193 (826)
..++ +..-+||+|.|
T Consensus 125 ~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHHTTSESEEEEE-C
T ss_pred HHhhcccccEEEEecC
Confidence 5553 44568999998
No 363
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.72 E-value=0.043 Score=56.20 Aligned_cols=25 Identities=44% Similarity=0.460 Sum_probs=22.1
Q ss_pred CCccEEEEEecCCCcHHHHHHHHhc
Q 003367 103 MSLPIISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 103 ~~~~vv~I~G~gGiGKTtLa~~v~~ 127 (826)
..+.+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999988765
No 364
>PRK13948 shikimate kinase; Provisional
Probab=95.71 E-value=0.095 Score=49.88 Aligned_cols=25 Identities=16% Similarity=0.310 Sum_probs=22.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
..+.|.++|+.|+||||+++.++..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999984
No 365
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.71 E-value=0.055 Score=55.07 Aligned_cols=41 Identities=17% Similarity=0.314 Sum_probs=31.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCC
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDP 146 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 146 (826)
.-+++.|.|.+|+|||++|.+++.... ..-..++|++...+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a--~~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA--SRGNPVLFVTVESP 75 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH--hCCCcEEEEEecCC
Confidence 457899999999999999999876322 22346788888653
No 366
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.69 E-value=0.14 Score=59.30 Aligned_cols=87 Identities=18% Similarity=0.176 Sum_probs=49.4
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCC--HHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVD--EIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVK 182 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 182 (826)
.+||+++|+.|+||||.+.+++...........+..++.. .+. ..+-++...+.++.......+.+++.+.+.+ ++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-LG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-hc
Confidence 4799999999999999999998743211111234444432 222 3344555555555433222334445444443 33
Q ss_pred CCceeEEeccCC
Q 003367 183 GKKFLLVLDDVW 194 (826)
Q Consensus 183 ~k~~LlVlDdv~ 194 (826)
++ =+|++|=.-
T Consensus 263 ~~-D~VLIDTAG 273 (767)
T PRK14723 263 DK-HLVLIDTVG 273 (767)
T ss_pred CC-CEEEEeCCC
Confidence 33 377778774
No 367
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.69 E-value=0.04 Score=53.81 Aligned_cols=82 Identities=22% Similarity=0.289 Sum_probs=50.6
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCC-CCHHHHHHHHHHHhcc-------cchhhhhH-------
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDP-VDEIRVAKAILESFRD-------VVSAVAAF------- 170 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~-------~~~~~~~~------- 170 (826)
+.++|.|.+|+|||+|+..+++... -+.++++.+.+. ..+.++.+.+...-.. ........
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 5689999999999999999998542 244577777654 3445555555433100 01111001
Q ss_pred --HHHHHHHHHHhcCCceeEEeccC
Q 003367 171 --DTLLRHIEKSVKGKKFLLVLDDV 193 (826)
Q Consensus 171 --~~~~~~l~~~l~~k~~LlVlDdv 193 (826)
-...+.++. +++.+|+++||+
T Consensus 92 ~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHH--TTSEEEEEEETH
T ss_pred cchhhhHHHhh--cCCceeehhhhh
Confidence 122333444 799999999999
No 368
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.69 E-value=0.033 Score=55.72 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=23.9
Q ss_pred CCccEEEEEecCCCcHHHHHHHHhccc
Q 003367 103 MSLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 103 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
....+|+|.|..|.|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999743
No 369
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.65 E-value=0.042 Score=54.46 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 003367 107 IISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.|.|.|++|+||||+|+.++..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999999884
No 370
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.65 E-value=0.047 Score=51.72 Aligned_cols=22 Identities=45% Similarity=0.631 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 003367 107 IISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.|.|.|.+|.||||+|+.+++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999985
No 371
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.64 E-value=0.058 Score=57.66 Aligned_cols=81 Identities=23% Similarity=0.282 Sum_probs=48.7
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccch-----hhhhHHHHHHHHHH
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVS-----AVAAFDTLLRHIEK 179 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 179 (826)
-.++.|.|.+|+|||||+.+++.... ..-..++|++..+. ...+ +.-++.++.... ...+.+.+.+.+.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a--~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~- 155 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLA--KRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIE- 155 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH-
Confidence 46899999999999999999987432 23345778776543 2322 222344443211 1123444444443
Q ss_pred HhcCCceeEEeccC
Q 003367 180 SVKGKKFLLVLDDV 193 (826)
Q Consensus 180 ~l~~k~~LlVlDdv 193 (826)
..+.-+||+|.+
T Consensus 156 --~~~~~lVVIDSI 167 (372)
T cd01121 156 --ELKPDLVIIDSI 167 (372)
T ss_pred --hcCCcEEEEcch
Confidence 246668999998
No 372
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.64 E-value=0.025 Score=55.61 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.8
Q ss_pred ccEEEEEecCCCcHHHHHHHHhc
Q 003367 105 LPIISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~ 127 (826)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47899999999999999999874
No 373
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.1 Score=58.33 Aligned_cols=184 Identities=21% Similarity=0.224 Sum_probs=96.8
Q ss_pred ccCCccccchHHHHHH---HHHHcCCCC---CCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCC
Q 003367 75 IDVSKVRGRDEEKKTI---IDLLLGSSS---QEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVD 148 (826)
Q Consensus 75 ~~~~~~vGr~~~~~~l---~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 148 (826)
+.-.++-|.|+.++++ ++.|.++.. -+..-++=|.++|++|.|||.||++++.... -.| .+.|..
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~--VPF-----f~iSGS-- 217 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG--VPF-----FSISGS-- 217 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccC--CCc-----eeccch--
Confidence 3445688988776655 555554431 0224567789999999999999999998543 222 122211
Q ss_pred HHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCC----------ChhhHH----HHHhhhcCCC--
Q 003367 149 EIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSG----------NPTKWE----ELVSTLKFGS-- 212 (826)
Q Consensus 149 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------~~~~~~----~l~~~~~~~~-- 212 (826)
+..+.+-+ .......+...+..+.-++.|++|.++.. ..++++ +++.....++
T Consensus 218 ------~FVemfVG-----vGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 218 ------DFVEMFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred ------hhhhhhcC-----CCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 11111110 01122334444555666899999988321 122333 3343444333
Q ss_pred CCcEEEEecccHHHHhh-----ccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchh
Q 003367 213 PESRILVTTRKEDVAKM-----MRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLA 283 (826)
Q Consensus 213 ~~s~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLa 283 (826)
.|-.|+..|..++|... ..-++.+.++.-+-..-.++++.++-...-. +.-++.. |++.+-|.-.|
T Consensus 287 ~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~~Vdl~~----iAr~tpGfsGA 357 (596)
T COG0465 287 EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-EDVDLKK----IARGTPGFSGA 357 (596)
T ss_pred CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-CcCCHHH----HhhhCCCcccc
Confidence 23334434444444322 2235667777666677777777665432221 2222222 66667665543
No 374
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.62 E-value=0.0083 Score=46.85 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=20.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 003367 107 IISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
+|+|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999985
No 375
>PRK05973 replicative DNA helicase; Provisional
Probab=95.61 E-value=0.054 Score=53.62 Aligned_cols=48 Identities=17% Similarity=0.115 Sum_probs=33.4
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHH
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAI 156 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 156 (826)
-.++.|.|.+|+|||++|.+++.... ..-..++|+++... ..++...+
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a--~~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAM--KSGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEEeCC--HHHHHHHH
Confidence 35899999999999999999987432 23345777776653 44444443
No 376
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.60 E-value=0.077 Score=50.67 Aligned_cols=23 Identities=39% Similarity=0.658 Sum_probs=21.1
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+++|+|..|.|||||++.++..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999863
No 377
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.60 E-value=0.00042 Score=67.37 Aligned_cols=104 Identities=24% Similarity=0.242 Sum_probs=71.6
Q ss_pred CCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCC--CCCCCC
Q 003367 619 KKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCE--QLPSLG 696 (826)
Q Consensus 619 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~--~l~~l~ 696 (826)
+.+.+.|+..++.+.+.. ....++.|+.|.|+-|.++.+ ..+..+++|++|+|..|.+.. .+..+.
T Consensus 18 l~~vkKLNcwg~~L~DIs----------ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLk 85 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS----------ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLK 85 (388)
T ss_pred HHHhhhhcccCCCccHHH----------HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHh
Confidence 445566677666654322 223578999999999999886 447899999999999998753 233688
Q ss_pred CCCccceeeccccccceEeCcccccCCCCccccCccCcCCCccceee
Q 003367 697 RLPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLE 743 (826)
Q Consensus 697 ~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 743 (826)
++|+|+.|.|..++.....+..... ..+..+|+|+.|+
T Consensus 86 nlpsLr~LWL~ENPCc~~ag~nYR~---------~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCCGEAGQNYRR---------KVLRVLPNLKKLD 123 (388)
T ss_pred cCchhhhHhhccCCcccccchhHHH---------HHHHHcccchhcc
Confidence 9999999999866644333322211 1134688888886
No 378
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.59 E-value=0.071 Score=53.61 Aligned_cols=88 Identities=16% Similarity=0.176 Sum_probs=52.4
Q ss_pred cEEEEEecCCCcHHHHHHHHhccccc--ccCCCcEEEEEeCCCC-CHHHHHHHHHHHhccc-------chhhhh-----H
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKV--DAHFDKRIWVCFSDPV-DEIRVAKAILESFRDV-------VSAVAA-----F 170 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~-----~ 170 (826)
+.++|.|-.|+|||+|+..++++... +.+-+.++++-+.+.. ...++...+.+.=... ...... .
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 46899999999999999999885431 1223567777776643 4455655555431110 011111 1
Q ss_pred HHHHHHHHHHh---cCCceeEEeccC
Q 003367 171 DTLLRHIEKSV---KGKKFLLVLDDV 193 (826)
Q Consensus 171 ~~~~~~l~~~l---~~k~~LlVlDdv 193 (826)
....-.+.+++ .++++|+++||+
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 11222333443 378999999999
No 379
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.58 E-value=0.12 Score=47.69 Aligned_cols=22 Identities=32% Similarity=0.665 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 003367 107 IISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
+|.|+|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999884
No 380
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.58 E-value=0.23 Score=48.73 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=21.0
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+++|.|..|.|||||++.++.-
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999863
No 381
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.55 E-value=0.03 Score=61.45 Aligned_cols=87 Identities=16% Similarity=0.189 Sum_probs=46.0
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEE-EEEeCCCC-CHHHHHHHHHHHh-----cccchhhhhHHHHHHHHH
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRI-WVCFSDPV-DEIRVAKAILESF-----RDVVSAVAAFDTLLRHIE 178 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~-wv~~~~~~-~~~~~~~~i~~~l-----~~~~~~~~~~~~~~~~l~ 178 (826)
+.++|+|.+|+|||||++.+++.... .+-++.+ ++-+.+-. .+.++...+-..+ ............+.-.+.
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~A 495 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERA 495 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHHH
Confidence 56899999999999999999984321 1223333 33333322 2222322220001 011111112222333344
Q ss_pred HHh--cCCceeEEeccC
Q 003367 179 KSV--KGKKFLLVLDDV 193 (826)
Q Consensus 179 ~~l--~~k~~LlVlDdv 193 (826)
+++ .++.+||++|++
T Consensus 496 e~fre~G~dVlillDSl 512 (672)
T PRK12678 496 KRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHcCCCEEEEEeCc
Confidence 444 689999999999
No 382
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.54 E-value=0.038 Score=58.73 Aligned_cols=52 Identities=27% Similarity=0.391 Sum_probs=38.4
Q ss_pred CccccchHHHHHHHHHHcCC--------CCCCCCCccEEEEEecCCCcHHHHHHHHhccc
Q 003367 78 SKVRGRDEEKKTIIDLLLGS--------SSQEKMSLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
..++|.++.++.+...+... .-...-.++.|.++|++|+|||++|++++...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999887666532 00011234679999999999999999999843
No 383
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.21 Score=53.06 Aligned_cols=123 Identities=17% Similarity=0.166 Sum_probs=65.5
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCc
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKK 185 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 185 (826)
|=-.++|++|.|||+++.++++... |+. .=+..+...+-.+ ++.++.. ...+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----ydI-ydLeLt~v~~n~d-Lr~LL~~----------------------t~~k 287 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YDI-YDLELTEVKLDSD-LRHLLLA----------------------TPNK 287 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----Cce-EEeeeccccCcHH-HHHHHHh----------------------CCCC
Confidence 4467999999999999999999543 331 1122222222112 2222221 2456
Q ss_pred eeEEeccCCCCC------h------------hhHHHHHhhhc--CCCC-CcE-EEEecccHHHHhh-----ccccceEEc
Q 003367 186 FLLVLDDVWSGN------P------------TKWEELVSTLK--FGSP-ESR-ILVTTRKEDVAKM-----MRTTSMILL 238 (826)
Q Consensus 186 ~LlVlDdv~~~~------~------------~~~~~l~~~~~--~~~~-~s~-iivTtR~~~v~~~-----~~~~~~~~l 238 (826)
-+||+.|++..- . ..+.-++..+. |... +-| ||.||...+-... ...+-.+.+
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEc
Confidence 677888874310 0 11111222222 2222 224 5567776543221 123456778
Q ss_pred cCCCCchhHHHHHHhhhc
Q 003367 239 AKLPDNDCWSLFSQIAFS 256 (826)
Q Consensus 239 ~~L~~~~~~~lf~~~a~~ 256 (826)
..=+.+....|+..+...
T Consensus 368 gyCtf~~fK~La~nYL~~ 385 (457)
T KOG0743|consen 368 GYCTFEAFKTLASNYLGI 385 (457)
T ss_pred CCCCHHHHHHHHHHhcCC
Confidence 888888888888887643
No 384
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.53 E-value=0.036 Score=51.91 Aligned_cols=24 Identities=42% Similarity=0.661 Sum_probs=21.1
Q ss_pred cEEEEEecCCCcHHHHHHHHhccc
Q 003367 106 PIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
+.|.+.|.+|+||||+|++++...
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 467899999999999999999844
No 385
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.53 E-value=0.06 Score=52.67 Aligned_cols=104 Identities=19% Similarity=0.296 Sum_probs=58.2
Q ss_pred CCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEE-------EEeCCCCCHHHH--HHHHHHHhcccc-hh-----
Q 003367 102 KMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIW-------VCFSDPVDEIRV--AKAILESFRDVV-SA----- 166 (826)
Q Consensus 102 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~w-------v~~~~~~~~~~~--~~~i~~~l~~~~-~~----- 166 (826)
.+++.+|.++||+|.||||..+.++.....++.-..++= |...-+.++++. +++..++.+..+ ..
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 346778899999999999999999885543332222211 122234455543 566666654321 11
Q ss_pred ---hhhHHHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCc
Q 003367 167 ---VAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPES 215 (826)
Q Consensus 167 ---~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s 215 (826)
....++.+..+.+.-..-.|.| +|-- .+ ...|.|..+|+
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~l-iDTP-----GQ----IE~FtWSAsGs 137 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYVL-IDTP-----GQ----IEAFTWSASGS 137 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEEE-EcCC-----Cc----eEEEEecCCcc
Confidence 1345666666666554444443 4433 21 23456666675
No 386
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.53 E-value=0.01 Score=58.50 Aligned_cols=26 Identities=42% Similarity=0.640 Sum_probs=23.3
Q ss_pred CccEEEEEecCCCcHHHHHHHHhccc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
+..+|+|.|.+|+||||||+.++...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999999843
No 387
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.52 E-value=0.14 Score=49.18 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHhccc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
...+|.|.|.+|.||||+|+.+....
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l 42 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKL 42 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999999743
No 388
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.51 E-value=0.085 Score=51.49 Aligned_cols=23 Identities=30% Similarity=0.680 Sum_probs=21.4
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+++|+|..|.|||||.+.++..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999875
No 389
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.51 E-value=0.019 Score=56.54 Aligned_cols=65 Identities=22% Similarity=0.238 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHH
Q 003367 86 EKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAK 154 (826)
Q Consensus 86 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 154 (826)
+..++++.+.... .+..+|+|.|++|+|||||..++......+++=-.++-|+-+.+++--.++.
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLG 78 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLG 78 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS-
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccc
Confidence 4556666666543 2567999999999999999999988654333323344555565665544433
No 390
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.51 E-value=0.37 Score=48.46 Aligned_cols=126 Identities=12% Similarity=0.069 Sum_probs=76.8
Q ss_pred cCCccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHH
Q 003367 76 DVSKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKA 155 (826)
Q Consensus 76 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 155 (826)
..++|+|-....+ +..++.... ..-+.+.++|+.|+|||+-++.+++.. .....+..+..++...+...
T Consensus 70 ~~~~~l~tkt~r~-~~~~~~~A~----k~g~l~~vyg~~g~gKt~a~~~y~~s~------p~~~l~~~~p~~~a~~~i~~ 138 (297)
T COG2842 70 LAPDFLETKTVRR-IFFRTRPAS----KTGSLVVVYGYAGLGKTQAAKNYAPSN------PNALLIEADPSYTALVLILI 138 (297)
T ss_pred ccccccccchhHh-Hhhhhhhhh----hcCceEEEeccccchhHHHHHhhcccC------ccceeecCChhhHHHHHHHH
Confidence 3456776554322 333332221 123488999999999999999999832 22333455666666655555
Q ss_pred HHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCCCCC
Q 003367 156 ILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPE 214 (826)
Q Consensus 156 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~ 214 (826)
+......... ..+.+....+...+.+..-+|++|+...-....++.+.......+-+
T Consensus 139 i~~~~~~~~~--~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~~Gi~ 195 (297)
T COG2842 139 ICAAAFGATD--GTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDKTGIG 195 (297)
T ss_pred HHHHHhcccc--hhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHhhCce
Confidence 5554443221 22334455555666888889999999766677777777766554444
No 391
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.50 E-value=0.2 Score=49.15 Aligned_cols=64 Identities=6% Similarity=0.025 Sum_probs=36.8
Q ss_pred HHHHhcCCceeEEeccCCC-CChhhHHHHHhhhcC-CCCCcEEEEecccHHHHhhccccceEEccCCCC
Q 003367 177 IEKSVKGKKFLLVLDDVWS-GNPTKWEELVSTLKF-GSPESRILVTTRKEDVAKMMRTTSMILLAKLPD 243 (826)
Q Consensus 177 l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~~~~-~~~~s~iivTtR~~~v~~~~~~~~~~~l~~L~~ 243 (826)
+.+.+-.++-++++|+--. -|....+.+...+.. ...|..||++|.+...... ...+.++.+..
T Consensus 138 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~~~~ 203 (207)
T PRK13539 138 LARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGPFAA 203 (207)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecCccC
Confidence 3444455678999999733 233444445444432 1236678888877655443 56677765433
No 392
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.45 E-value=0.11 Score=50.34 Aligned_cols=22 Identities=32% Similarity=0.258 Sum_probs=20.6
Q ss_pred cEEEEEecCCCcHHHHHHHHhc
Q 003367 106 PIISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~ 127 (826)
++++|+|+.|.|||||.+.++.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 6999999999999999999975
No 393
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.44 E-value=0.086 Score=53.50 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=20.4
Q ss_pred EEEEEecCCCcHHHHHHHHhccc
Q 003367 107 IISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
.|.++|.+|+||||+|++++...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999743
No 394
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.43 E-value=0.057 Score=50.37 Aligned_cols=118 Identities=20% Similarity=0.265 Sum_probs=60.9
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCc
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKK 185 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 185 (826)
.+++|+|..|.|||||++.++.... ...+.+++........ ........+..... ....+...-.+...+...+
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~--~~~~~~~~i~~~~q-lS~G~~~r~~l~~~l~~~~ 99 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKL--PLEELRRRIGYVPQ-LSGGQRQRVALARALLLNP 99 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccC--CHHHHHhceEEEee-CCHHHHHHHHHHHHHhcCC
Confidence 5899999999999999999997432 2344554432211110 00111111111100 1111222333455555667
Q ss_pred eeEEeccCCCC-ChhhHHHHHhhhcCC-CCCcEEEEecccHHHHhh
Q 003367 186 FLLVLDDVWSG-NPTKWEELVSTLKFG-SPESRILVTTRKEDVAKM 229 (826)
Q Consensus 186 ~LlVlDdv~~~-~~~~~~~l~~~~~~~-~~~s~iivTtR~~~v~~~ 229 (826)
-++++|+.-.. |......+...+... ..+.-++++|.+......
T Consensus 100 ~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 100 DLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 89999998431 233333443333321 124567777777665544
No 395
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.43 E-value=0.11 Score=52.04 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=29.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCC
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSD 145 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 145 (826)
.-.++.|.|.+|+||||+|.+++.... ..-..++|++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~--~~g~~~~~is~e~ 58 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL--RDGDPVIYVTTEE 58 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH--hcCCeEEEEEccC
Confidence 346899999999999999998875321 2335678887754
No 396
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.43 E-value=0.041 Score=53.58 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=22.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
...+|+|+|++|+||||+|+.+...
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5579999999999999999999983
No 397
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.42 E-value=0.0063 Score=52.99 Aligned_cols=27 Identities=37% Similarity=0.576 Sum_probs=18.8
Q ss_pred EEEEecCCCcHHHHHHHHhcccccccCCC
Q 003367 108 ISILGTGGVGKTTLARLVFNEVKVDAHFD 136 (826)
Q Consensus 108 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~ 136 (826)
|.|+|.+|+||||+|++++. .....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67999999999999999998 4556664
No 398
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.40 E-value=0.016 Score=59.79 Aligned_cols=51 Identities=22% Similarity=0.346 Sum_probs=44.6
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcc
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
..|+|.++.++++++.+...+......-+|+.++|+.|.||||||+.+-+-
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~ 111 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRG 111 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999998766544567789999999999999999999873
No 399
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.35 Score=46.75 Aligned_cols=154 Identities=15% Similarity=0.193 Sum_probs=82.9
Q ss_pred ccchHHHHHHHHHHcCCCCC-------CCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHH
Q 003367 81 RGRDEEKKTIIDLLLGSSSQ-------EKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVA 153 (826)
Q Consensus 81 vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 153 (826)
-|-|+.+++|.+.+.-+... +-.+++-|.++|++|.|||-||++||+.. ..-|+.+|.. +
T Consensus 150 GgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-------~c~firvsgs----e-- 216 (404)
T KOG0728|consen 150 GGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGS----E-- 216 (404)
T ss_pred ccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-------ceEEEEechH----H--
Confidence 34677788877766543211 23466779999999999999999999833 3445566542 1
Q ss_pred HHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCC-----------ChhhHHH---HHhhhcC--CCCCcEE
Q 003367 154 KAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSG-----------NPTKWEE---LVSTLKF--GSPESRI 217 (826)
Q Consensus 154 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~---l~~~~~~--~~~~s~i 217 (826)
+.+..-+. ...-+.++.-.-+ ..-+..|..|.+.+. +.+.-.. ++..+.. ..+.-+|
T Consensus 217 --lvqk~ige--gsrmvrelfvmar---ehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikv 289 (404)
T KOG0728|consen 217 --LVQKYIGE--GSRMVRELFVMAR---EHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKV 289 (404)
T ss_pred --HHHHHhhh--hHHHHHHHHHHHH---hcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEE
Confidence 11111110 0001111111111 345778888988431 1111111 2222222 2356688
Q ss_pred EEecccHHHHhh-----ccccceEEccCCCCchhHHHHHHhh
Q 003367 218 LVTTRKEDVAKM-----MRTTSMILLAKLPDNDCWSLFSQIA 254 (826)
Q Consensus 218 ivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~a 254 (826)
|.+|..-++... ...++-++..+-+.+.-.++++-+.
T Consensus 290 imatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 290 IMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred EEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 887765444332 2235567777766666666666543
No 400
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.38 E-value=0.2 Score=49.78 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=21.1
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+++|+|..|.|||||++.++..
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999999863
No 401
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.37 E-value=0.024 Score=50.34 Aligned_cols=42 Identities=17% Similarity=0.174 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccc
Q 003367 85 EEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVK 130 (826)
Q Consensus 85 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 130 (826)
++.+++-+.|...-. .-.+|.+.|.-|.||||+++.+++...
T Consensus 6 ~~t~~l~~~l~~~l~----~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 6 KAMDKFGKAFAKPLD----FGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHHhCC----CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 444555555543211 235899999999999999999998543
No 402
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.36 E-value=0.016 Score=57.81 Aligned_cols=66 Identities=21% Similarity=0.233 Sum_probs=46.0
Q ss_pred HHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 88 KTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 88 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
.+++..+.... .+..+|+|.|.+|+|||||.-++......+++=-.++-|+-|++++--.++.+=.
T Consensus 38 ~~ll~~l~p~t----G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRi 103 (323)
T COG1703 38 RELLRALYPRT----GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRI 103 (323)
T ss_pred HHHHHHHhhcC----CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHh
Confidence 44555555443 3678999999999999999999988665445544556667777777655554433
No 403
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.36 E-value=0.35 Score=46.21 Aligned_cols=121 Identities=17% Similarity=0.167 Sum_probs=65.2
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeC-------------------CCC-------------------
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFS-------------------DPV------------------- 147 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-------------------~~~------------------- 147 (826)
.||+|+|++|.|||||.+.+..=. ..-.+.+|+.-. +.+
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE---~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v 105 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLE---EPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV 105 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCc---CCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH
Confidence 599999999999999999997622 222344554321 111
Q ss_pred ------CHHHHHHHHHHHhcccc------hhhhhHHHHHHHHHHHhcCCceeEEeccCCC-CChhhHHHHHhhhcC-CCC
Q 003367 148 ------DEIRVAKAILESFRDVV------SAVAAFDTLLRHIEKSVKGKKFLLVLDDVWS-GNPTKWEELVSTLKF-GSP 213 (826)
Q Consensus 148 ------~~~~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~~~~-~~~ 213 (826)
..++...++++.++... .......+-.-.|.+.|.-++=++.+|..-+ -|++-..+++..+.. ...
T Consensus 106 ~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e 185 (240)
T COG1126 106 KKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 185 (240)
T ss_pred cCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc
Confidence 01122223333332211 1112223334457777777888999999844 234444444443332 234
Q ss_pred CcEEEEecccHHHHhh
Q 003367 214 ESRILVTTRKEDVAKM 229 (826)
Q Consensus 214 ~s~iivTtR~~~v~~~ 229 (826)
|--.|+.|-....|..
T Consensus 186 GmTMivVTHEM~FAr~ 201 (240)
T COG1126 186 GMTMIIVTHEMGFARE 201 (240)
T ss_pred CCeEEEEechhHHHHH
Confidence 5455666666555554
No 404
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.35 E-value=0.099 Score=54.43 Aligned_cols=82 Identities=18% Similarity=0.215 Sum_probs=47.3
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeC-CCCCHHHHHHHHHHHhccc-------chhh-----hhHH-
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFS-DPVDEIRVAKAILESFRDV-------VSAV-----AAFD- 171 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~-------~~~~-----~~~~- 171 (826)
..++|+|..|.|||||++.++.... -+..+..-+. ...++.++.......-+.. ..+. ....
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~ 145 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAY 145 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHH
Confidence 5789999999999999999997432 1223333333 3345555555554432110 0111 0111
Q ss_pred ---HHHHHHHHHhcCCceeEEeccC
Q 003367 172 ---TLLRHIEKSVKGKKFLLVLDDV 193 (826)
Q Consensus 172 ---~~~~~l~~~l~~k~~LlVlDdv 193 (826)
.+.+.+++ +++.+|+++||+
T Consensus 146 ~a~~~AEyfr~--~g~~Vll~~Dsl 168 (326)
T cd01136 146 TATAIAEYFRD--QGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHH--cCCCeEEEeccc
Confidence 22333333 589999999998
No 405
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.35 E-value=0.051 Score=54.64 Aligned_cols=82 Identities=22% Similarity=0.221 Sum_probs=46.6
Q ss_pred cEEEEEecCCCcHHHHH-HHHhcccccccCCCcE-EEEEeCCC-CCHHHHHHHHHHHhccc-------chhhhhH-----
Q 003367 106 PIISILGTGGVGKTTLA-RLVFNEVKVDAHFDKR-IWVCFSDP-VDEIRVAKAILESFRDV-------VSAVAAF----- 170 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~~-~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~----- 170 (826)
+.++|.|..|+|||+|| ..+.+.. .-+.+ +++-+.+. ..+.++.+.+.+.-... ..+....
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a 145 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLA 145 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHH
Confidence 56899999999999996 5666521 22333 55555554 34455555555321100 0111011
Q ss_pred ----HHHHHHHHHHhcCCceeEEeccC
Q 003367 171 ----DTLLRHIEKSVKGKKFLLVLDDV 193 (826)
Q Consensus 171 ----~~~~~~l~~~l~~k~~LlVlDdv 193 (826)
-.+.+.++. +++.+|||+||+
T Consensus 146 ~~~a~aiAE~fr~--~G~~Vlvl~Dsl 170 (274)
T cd01132 146 PYTGCAMGEYFMD--NGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHH--CCCCEEEEEcCh
Confidence 122333433 589999999999
No 406
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.34 E-value=0.035 Score=56.49 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=19.0
Q ss_pred cEEEEEecCCCcHHHHHHHHhccc
Q 003367 106 PIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
+.|.|+|.+|.||||+|+++....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 368999999999999999999854
No 407
>PRK04328 hypothetical protein; Provisional
Probab=95.33 E-value=0.056 Score=54.71 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=31.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCC
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDP 146 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 146 (826)
.-.++.|.|.+|.|||+||.++.... -..-..++|++..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~--~~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG--LQMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH--HhcCCcEEEEEeeCC
Confidence 34689999999999999999987632 123456788887663
No 408
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.31 E-value=0.032 Score=63.63 Aligned_cols=75 Identities=12% Similarity=0.130 Sum_probs=56.5
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
.+++|.++.++.+...+... +.+.|+|.+|+||||+|+.+++.. ...+++..+|..- ...+...+++.+.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~n-p~~~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPN-PEDPNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeC-CCcchHHHHHHHH
Confidence 56899999999888877542 368899999999999999999853 2334577778554 4456777888888
Q ss_pred HHhcc
Q 003367 158 ESFRD 162 (826)
Q Consensus 158 ~~l~~ 162 (826)
..++.
T Consensus 101 ~~~G~ 105 (637)
T PRK13765 101 AGKGK 105 (637)
T ss_pred HhcCH
Confidence 76663
No 409
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.30 E-value=0.013 Score=57.58 Aligned_cols=25 Identities=44% Similarity=0.601 Sum_probs=22.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
...+|+|+|++|+||||||+.++..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999974
No 410
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.29 E-value=0.058 Score=58.79 Aligned_cols=87 Identities=16% Similarity=0.158 Sum_probs=52.4
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCC-CCHHHHHHHHHHHhccc-------chhhh-----hHHH
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDP-VDEIRVAKAILESFRDV-------VSAVA-----AFDT 172 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~-----~~~~ 172 (826)
+.++|.|.+|+|||||+.++++.... .+-+.++++-+.+. ..+.++...+...-... ..+.. ....
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~ 222 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVL 222 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHH
Confidence 56999999999999999998875432 24466667666543 34455555555431110 11111 1112
Q ss_pred HHHHHHHHh---cCCceeEEeccC
Q 003367 173 LLRHIEKSV---KGKKFLLVLDDV 193 (826)
Q Consensus 173 ~~~~l~~~l---~~k~~LlVlDdv 193 (826)
..-.+.+++ +++.+|+++||+
T Consensus 223 ~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 223 TGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHhcCCceEEEeccc
Confidence 223344444 389999999999
No 411
>PRK06762 hypothetical protein; Provisional
Probab=95.27 E-value=0.013 Score=55.34 Aligned_cols=23 Identities=39% Similarity=0.603 Sum_probs=21.3
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+|.|+|+.|+||||+|+++++.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999974
No 412
>PRK06547 hypothetical protein; Provisional
Probab=95.26 E-value=0.023 Score=53.65 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=22.8
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
...+|+|.|..|.||||+|+.++..
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999874
No 413
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.24 E-value=0.035 Score=55.50 Aligned_cols=48 Identities=27% Similarity=0.360 Sum_probs=32.2
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccC-CCcEEEEEeCCCCCHHHHHHH
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAH-FDKRIWVCFSDPVDEIRVAKA 155 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~ 155 (826)
.-.++.|.|.+|+|||++|.+++.... .. =+.++||++.++. .++.+.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~--~~~ge~vlyvs~ee~~--~~l~~~ 66 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGL--KNFGEKVLYVSFEEPP--EELIEN 66 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HHHT--EEEEESSS-H--HHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhh--hhcCCcEEEEEecCCH--HHHHHH
Confidence 456999999999999999999876321 22 3567888876643 444444
No 414
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.24 E-value=0.15 Score=50.52 Aligned_cols=120 Identities=17% Similarity=0.237 Sum_probs=64.9
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccc-----cc--c----CC---CcEEEEEeCC------CCCHH---------------
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVK-----VD--A----HF---DKRIWVCFSD------PVDEI--------------- 150 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~-----~~--~----~f---~~~~wv~~~~------~~~~~--------------- 150 (826)
.+++|+|+.|.|||||.+.+..-.+ +. . .+ ..+.||.=.. +.++.
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 5899999999999999999987221 00 0 01 2344543111 11221
Q ss_pred -------HHHHHHHHHhcccc------hhhhhHHHHHHHHHHHhcCCceeEEeccCCC-CChh---hHHHHHhhhcCCCC
Q 003367 151 -------RVAKAILESFRDVV------SAVAAFDTLLRHIEKSVKGKKFLLVLDDVWS-GNPT---KWEELVSTLKFGSP 213 (826)
Q Consensus 151 -------~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~---~~~~l~~~~~~~~~ 213 (826)
+...+.+++++... .....-+.-.-.+.+.|..++=|+|||.--. .|.. ..-++...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 23333334433211 1112223334467777888899999998422 1222 233333344333
Q ss_pred CcEEEEecccHHHH
Q 003367 214 ESRILVTTRKEDVA 227 (826)
Q Consensus 214 ~s~iivTtR~~~v~ 227 (826)
|.-|++.|-+-...
T Consensus 189 g~tIl~vtHDL~~v 202 (254)
T COG1121 189 GKTVLMVTHDLGLV 202 (254)
T ss_pred CCEEEEEeCCcHHh
Confidence 77788888875543
No 415
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.24 E-value=0.0089 Score=34.49 Aligned_cols=20 Identities=35% Similarity=0.785 Sum_probs=10.7
Q ss_pred CccEEEccCCCCccccchhhc
Q 003367 492 HLRYLNLSNNDAIYELPEALC 512 (826)
Q Consensus 492 ~L~~L~Ls~~~~~~~lp~~i~ 512 (826)
+|++|+|++|. ++.+|++|+
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTT
T ss_pred CccEEECCCCc-CEeCChhhc
Confidence 35566666664 445555444
No 416
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.20 E-value=0.044 Score=53.40 Aligned_cols=118 Identities=14% Similarity=0.153 Sum_probs=58.9
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchh-------hhhHHHHHHHH
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSA-------VAAFDTLLRHI 177 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~~~l 177 (826)
.+++.|.|+.|.||||+.+.++...-.. + .-.+|.+.. ..-.+...|...++..... ..+..++...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la-~--~G~~vpa~~--~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMA-Q--IGCFVPAEY--ATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHH-H--cCCCcchhh--cCccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 3689999999999999999886432110 0 011111111 0011222222222221110 11122222222
Q ss_pred HHHhcCCceeEEeccCCCCC-hhh----HHHHHhhhcCCCCCcEEEEecccHHHHhhcc
Q 003367 178 EKSVKGKKFLLVLDDVWSGN-PTK----WEELVSTLKFGSPESRILVTTRKEDVAKMMR 231 (826)
Q Consensus 178 ~~~l~~k~~LlVlDdv~~~~-~~~----~~~l~~~~~~~~~~s~iivTtR~~~v~~~~~ 231 (826)
+ +..++-|+++|..-... +.+ ...+...+.. .|..+|+||-...++..+.
T Consensus 104 -~-~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 104 -D-YADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred -H-hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 2 23567899999984321 222 1223333332 3788999999988876544
No 417
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.26 Score=47.43 Aligned_cols=25 Identities=36% Similarity=0.601 Sum_probs=22.3
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccc
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVK 130 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~ 130 (826)
.+-+|-|+.|.||||||..+.-++.
T Consensus 31 EvhaiMGPNGsGKSTLa~~i~G~p~ 55 (251)
T COG0396 31 EVHAIMGPNGSGKSTLAYTIMGHPK 55 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4889999999999999999987654
No 418
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.16 E-value=0.35 Score=48.61 Aligned_cols=23 Identities=39% Similarity=0.715 Sum_probs=21.2
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+++|.|..|.|||||++.++.-
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 28 KKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999864
No 419
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.16 E-value=0.025 Score=50.03 Aligned_cols=33 Identities=36% Similarity=0.493 Sum_probs=25.1
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCC
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSD 145 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 145 (826)
.-|.|.|.+|+||||+|.+++... ..-|+++++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~-------~~~~i~isd 40 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKT-------GLEYIEISD 40 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHh-------CCceEehhh
Confidence 458899999999999999999622 123666665
No 420
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.15 E-value=0.095 Score=58.72 Aligned_cols=53 Identities=21% Similarity=0.313 Sum_probs=36.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFR 161 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 161 (826)
.-.++.|.|.+|+||||||.+++... ..+-..++|+++.+ +..++...+ +.++
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~--~~~ge~~~y~s~eE--s~~~i~~~~-~~lg 314 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENA--CANKERAILFAYEE--SRAQLLRNA-YSWG 314 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEEeeC--CHHHHHHHH-HHcC
Confidence 45689999999999999999998843 23335677777665 344444443 4444
No 421
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.15 Score=49.64 Aligned_cols=51 Identities=25% Similarity=0.210 Sum_probs=37.2
Q ss_pred CccccchHHHHHHHHHHcCCCC-------CCCCCccEEEEEecCCCcHHHHHHHHhcc
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSS-------QEKMSLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
+++-|=.+.++++.+...-+-- -+-..++-|.++|++|.|||-+|++|++.
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanr 234 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANR 234 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcc
Confidence 3466778888888776543311 01234567899999999999999999993
No 422
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.14 E-value=0.088 Score=56.82 Aligned_cols=88 Identities=17% Similarity=0.233 Sum_probs=45.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCC-CCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDP-VDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVK 182 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 182 (826)
...+|+++|..|+||||++.+++.........+.+..+..... ....+-+....+.++.......+..+....+.. +.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~-l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHE-LR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHH-hc
Confidence 4579999999999999999988863221222233444433221 122223444444444333222223333333322 33
Q ss_pred CCceeEEeccC
Q 003367 183 GKKFLLVLDDV 193 (826)
Q Consensus 183 ~k~~LlVlDdv 193 (826)
+ .-++++|-.
T Consensus 269 ~-~d~VLIDTa 278 (420)
T PRK14721 269 G-KHMVLIDTV 278 (420)
T ss_pred C-CCEEEecCC
Confidence 3 345667776
No 423
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.12 E-value=0.015 Score=55.12 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=23.0
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVK 130 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 130 (826)
..+|+|-||=|+||||||+.+++...
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999543
No 424
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.12 E-value=0.055 Score=61.16 Aligned_cols=134 Identities=16% Similarity=0.151 Sum_probs=70.9
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
..++|....++++.+.+..-+. .-.-|.|+|..|+||+++|+++..... ..-...+.+++..-.+ ..+...+
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~s~--r~~~pfv~inca~~~~-~~~e~el- 275 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLRSP--RGKKPFLALNCASIPD-DVVESEL- 275 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHhCC--CCCCCeEEeccccCCH-HHHHHHh-
Confidence 4689999888888777654332 123488999999999999999876321 1112334556554331 1111111
Q ss_pred HHhcccchhhhhH-HHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCCC-----------CCcEEEEecccH
Q 003367 158 ESFRDVVSAVAAF-DTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGS-----------PESRILVTTRKE 224 (826)
Q Consensus 158 ~~l~~~~~~~~~~-~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~-----------~~s~iivTtR~~ 224 (826)
++......... +.....+. ....=.|+||+|+.-.......+...+..+. ...|||.||...
T Consensus 276 --FG~~~~~~~~~~~~~~g~~e---~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 276 --FGHAPGAYPNALEGKKGFFE---QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 349 (520)
T ss_pred --cCCCCCCcCCcccCCCChhh---hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCC
Confidence 12111000000 00000011 1223357899997666666666766664421 134788877653
No 425
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=95.11 E-value=0.096 Score=56.61 Aligned_cols=86 Identities=22% Similarity=0.174 Sum_probs=49.6
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhccc-------chh-----hhhHHH
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDV-------VSA-----VAAFDT 172 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~~~-----~~~~~~ 172 (826)
-+.++|+|..|+|||||++.++.... ....++...-.+...+.++....+..-+.. ..+ ......
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~ 232 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNAK---ADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAK 232 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCC---CCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHH
Confidence 35789999999999999999998432 122233332233455666666555442211 001 111122
Q ss_pred HHHHHHHHh--cCCceeEEeccC
Q 003367 173 LLRHIEKSV--KGKKFLLVLDDV 193 (826)
Q Consensus 173 ~~~~l~~~l--~~k~~LlVlDdv 193 (826)
....+.+++ +++++|||+||+
T Consensus 233 ~a~~iAEyfr~~G~~VLlilDsl 255 (432)
T PRK06793 233 LATSIAEYFRDQGNNVLLMMDSV 255 (432)
T ss_pred HHHHHHHHHHHcCCcEEEEecch
Confidence 222333333 589999999999
No 426
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.06 E-value=0.22 Score=50.52 Aligned_cols=104 Identities=15% Similarity=0.185 Sum_probs=53.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCC-CHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPV-DEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVK 182 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 182 (826)
...+++++|.+|+||||+++.++.... ..=..+.+++..... ....-++...+.++.......+.+.+.+.+...-+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~--~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFH--GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 346999999999999999999987432 211234555543221 11122223333333221122233344444433222
Q ss_pred -CCceeEEeccCCCC--ChhhHHHHHhhhc
Q 003367 183 -GKKFLLVLDDVWSG--NPTKWEELVSTLK 209 (826)
Q Consensus 183 -~k~~LlVlDdv~~~--~~~~~~~l~~~~~ 209 (826)
.+.=++++|..-.. +....+.+...+.
T Consensus 152 ~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~ 181 (270)
T PRK06731 152 EARVDYILIDTAGKNYRASETVEEMIETMG 181 (270)
T ss_pred cCCCCEEEEECCCCCcCCHHHHHHHHHHHh
Confidence 34568899998543 2334455544443
No 427
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.04 E-value=0.027 Score=53.69 Aligned_cols=23 Identities=39% Similarity=0.699 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhccc
Q 003367 107 IISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
+|+|.|.+|.||||+|+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999843
No 428
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.03 E-value=0.25 Score=61.74 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=22.9
Q ss_pred CccEEEEEecCCCcHHHHHHHHhccc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
.++=|.++|++|.|||.||+++|.+.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 45678999999999999999999853
No 429
>PRK05922 type III secretion system ATPase; Validated
Probab=95.03 E-value=0.13 Score=55.54 Aligned_cols=84 Identities=13% Similarity=0.179 Sum_probs=47.2
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCC-CCCHHHHHHHHHHHhccc-------chhhh-----hHHH
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSD-PVDEIRVAKAILESFRDV-------VSAVA-----AFDT 172 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~-------~~~~~-----~~~~ 172 (826)
..++|+|..|+|||||++.++.... .+...++.+.+ .....+.+.+........ ..+.. ....
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~ 233 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGR 233 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHH
Confidence 4699999999999999999997421 23333333333 333444554444333211 01110 1111
Q ss_pred HHHHHHHHh--cCCceeEEeccC
Q 003367 173 LLRHIEKSV--KGKKFLLVLDDV 193 (826)
Q Consensus 173 ~~~~l~~~l--~~k~~LlVlDdv 193 (826)
..-.+.+++ +++++|+++||+
T Consensus 234 ~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 234 AAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 222233333 589999999999
No 430
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.02 E-value=0.16 Score=47.58 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=19.0
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 003367 108 ISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 108 v~I~G~gGiGKTtLa~~v~~~ 128 (826)
|.|+|+.|+||||+|+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999984
No 431
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.02 E-value=0.068 Score=49.02 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=23.2
Q ss_pred CccEEEEEecCCCcHHHHHHHHhccc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
...+|.+.|.+|.||||+|.+++...
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L 47 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKL 47 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999843
No 432
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.01 E-value=0.13 Score=55.96 Aligned_cols=86 Identities=23% Similarity=0.313 Sum_probs=49.4
Q ss_pred cEEEEEecCCCcHHHHH-HHHhcccccc-----cCCCcEEEEEeCCCCCHHHHHHHHHHHhc-cc-------chhhhh--
Q 003367 106 PIISILGTGGVGKTTLA-RLVFNEVKVD-----AHFDKRIWVCFSDPVDEIRVAKAILESFR-DV-------VSAVAA-- 169 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa-~~v~~~~~~~-----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-~~-------~~~~~~-- 169 (826)
+.++|.|-.|+|||+|| -.+.++..+. +.-+.++++-+.+..+...-+.+.++.-+ .. ..+...
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~ 269 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGL 269 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHH
Confidence 46899999999999997 5567653221 23355777777775543332333333322 10 001101
Q ss_pred -------HHHHHHHHHHHhcCCceeEEeccC
Q 003367 170 -------FDTLLRHIEKSVKGKKFLLVLDDV 193 (826)
Q Consensus 170 -------~~~~~~~l~~~l~~k~~LlVlDdv 193 (826)
.-.+.+.+++ +++.+|+|+||+
T Consensus 270 r~~Apy~a~tiAEYFrd--~GkdVLiv~DDL 298 (574)
T PTZ00185 270 QYLAPYSGVTMGEYFMN--RGRHCLCVYDDL 298 (574)
T ss_pred HHHHHHHHHHHHHHHHH--cCCCEEEEEcCc
Confidence 1123344443 589999999999
No 433
>PRK04040 adenylate kinase; Provisional
Probab=95.01 E-value=0.018 Score=55.24 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=21.3
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+|+|+|++|+||||+++.+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 58999999999999999999884
No 434
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.99 E-value=0.11 Score=56.15 Aligned_cols=85 Identities=20% Similarity=0.187 Sum_probs=48.7
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCC-CCHHHHHHHHHHHhccc-------chhhhh-----HH
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDP-VDEIRVAKAILESFRDV-------VSAVAA-----FD 171 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~-----~~ 171 (826)
-+.++|+|..|+|||||++.+++... .+.++++-+.+. ..+.++....+..-+.. ..+... ..
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 35799999999999999999997432 234455555443 33445554444321110 011111 11
Q ss_pred HHHHHHHHHh--cCCceeEEeccC
Q 003367 172 TLLRHIEKSV--KGKKFLLVLDDV 193 (826)
Q Consensus 172 ~~~~~l~~~l--~~k~~LlVlDdv 193 (826)
...-.+.+++ +++.+|+++||+
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCc
Confidence 1122233333 589999999999
No 435
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.98 E-value=0.35 Score=48.80 Aligned_cols=23 Identities=39% Similarity=0.743 Sum_probs=21.4
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+++|+|..|+|||||++.++..
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 436
>PRK03839 putative kinase; Provisional
Probab=94.98 E-value=0.017 Score=55.36 Aligned_cols=23 Identities=52% Similarity=0.827 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhccc
Q 003367 107 IISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
.|.|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999843
No 437
>PRK08149 ATP synthase SpaL; Validated
Probab=94.97 E-value=0.12 Score=55.71 Aligned_cols=85 Identities=16% Similarity=0.263 Sum_probs=48.4
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCC-CCCHHHHHHHHHHHhccc-------chhhh-----hHH
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSD-PVDEIRVAKAILESFRDV-------VSAVA-----AFD 171 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~-------~~~~~-----~~~ 171 (826)
-..++|+|..|+|||||+..++.... -+.+++..+.. ..++.++........... ..+.. ...
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 35799999999999999999997432 23333333332 334555555555432210 01111 111
Q ss_pred HHHHHHHHHh--cCCceeEEeccC
Q 003367 172 TLLRHIEKSV--KGKKFLLVLDDV 193 (826)
Q Consensus 172 ~~~~~l~~~l--~~k~~LlVlDdv 193 (826)
.....+.+++ +++++|+++||+
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccch
Confidence 1222233333 589999999999
No 438
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=94.97 E-value=0.078 Score=62.03 Aligned_cols=131 Identities=23% Similarity=0.186 Sum_probs=71.5
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
+.++|....+.++.+....-+. .-.-|.|+|..|+||+++|+.+.+... ..-...+.|++..-.. ..+...++
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~~A~~ih~~s~--r~~~pfv~vnc~~~~~-~~~~~elf 397 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAK----SSFPVLLCGEEGVGKALLAQAIHNESE--RAAGPYIAVNCQLYPD-EALAEEFL 397 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCcCHHHHHHHHHHhCC--ccCCCeEEEECCCCCh-HHHHHHhc
Confidence 4588888888887777655432 222478999999999999999987321 1112334455554321 22222222
Q ss_pred HHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCCC-----------CCcEEEEeccc
Q 003367 158 ESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGS-----------PESRILVTTRK 223 (826)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~-----------~~s~iivTtR~ 223 (826)
......... .....+ -....=.|+||+|..-.......+...+..+. ...|||.||..
T Consensus 398 g~~~~~~~~-----~~~g~~---~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 398 GSDRTDSEN-----GRLSKF---ELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred CCCCcCccC-----CCCCce---eECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 211000000 000000 01223469999996666666667777664321 13467777664
No 439
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.97 E-value=0.059 Score=57.41 Aligned_cols=52 Identities=25% Similarity=0.374 Sum_probs=38.6
Q ss_pred CCccccchHHHHHHHHHHcCC--------CCCCCCCccEEEEEecCCCcHHHHHHHHhcc
Q 003367 77 VSKVRGRDEEKKTIIDLLLGS--------SSQEKMSLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
...++|.++.++.+..++... ........+.|.++|+.|+|||++|+.++..
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999988877531 0000112467899999999999999999984
No 440
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.96 E-value=0.012 Score=33.97 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=8.2
Q ss_pred CCeeeecCcccccCCccC
Q 003367 541 LRHLINEGTPLLYLPKGL 558 (826)
Q Consensus 541 L~~L~l~~~~l~~lp~~i 558 (826)
|++|++++|+++.+|.+|
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444444444444444443
No 441
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.94 E-value=0.17 Score=51.67 Aligned_cols=109 Identities=17% Similarity=0.214 Sum_probs=59.2
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccch--------hhhhHHHHHHHH
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVS--------AVAAFDTLLRHI 177 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--------~~~~~~~~~~~l 177 (826)
.++.|-|.+|+|||++|.+++.+...... ..++|++.. -+..++...++........ ...+.+.+.+ .
T Consensus 20 ~L~vi~a~pg~GKT~~~l~ia~~~a~~~~-~~vly~SlE--m~~~~l~~R~la~~s~v~~~~i~~g~l~~~e~~~~~~-~ 95 (259)
T PF03796_consen 20 ELTVIAARPGVGKTAFALQIALNAALNGG-YPVLYFSLE--MSEEELAARLLARLSGVPYNKIRSGDLSDEEFERLQA-A 95 (259)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTTS-SEEEEEESS--S-HHHHHHHHHHHHHTSTHHHHHCCGCHHHHHHHHHH-H
T ss_pred cEEEEEecccCCchHHHHHHHHHHHHhcC-CeEEEEcCC--CCHHHHHHHHHHHhhcchhhhhhccccCHHHHHHHHH-H
Confidence 48999999999999999999986543322 456666554 3566677777766543211 1122233222 2
Q ss_pred HHHhcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEe
Q 003367 178 EKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVT 220 (826)
Q Consensus 178 ~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivT 220 (826)
...+.+.+ +++++..+.+.++.......+.....+..+||-
T Consensus 96 ~~~l~~~~--l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~I 136 (259)
T PF03796_consen 96 AEKLSDLP--LYIEDTPSLTIDDIESKIRRLKREGKKVDVVFI 136 (259)
T ss_dssp HHHHHTSE--EEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEE
T ss_pred HHHHhhCc--EEEECCCCCCHHHHHHHHHHHHhhccCCCEEEe
Confidence 34455555 444555444444444444443332244455543
No 442
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.93 E-value=0.28 Score=47.55 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=21.2
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+++|.|..|.|||||.+.++.-
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 443
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.92 E-value=0.27 Score=48.04 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=21.3
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+++|+|..|.|||||++.++..
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhccc
Confidence 58999999999999999999874
No 444
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.92 E-value=0.095 Score=56.44 Aligned_cols=84 Identities=15% Similarity=0.173 Sum_probs=48.7
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCC-CHHHHHHHHHHHhccc-------chhhhh-----HHH
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPV-DEIRVAKAILESFRDV-------VSAVAA-----FDT 172 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~-----~~~ 172 (826)
..++|+|..|+|||||++.++... ..+.++.+-+.+.. .+.++...++..-+.. ..+... ...
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~ 238 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCE 238 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHH
Confidence 579999999999999999998732 22455555555433 3344555544331110 011111 111
Q ss_pred HHHHHHHHh--cCCceeEEeccC
Q 003367 173 LLRHIEKSV--KGKKFLLVLDDV 193 (826)
Q Consensus 173 ~~~~l~~~l--~~k~~LlVlDdv 193 (826)
..-.+.+++ +++++|+++||+
T Consensus 239 ~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 239 TATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCh
Confidence 122233333 689999999999
No 445
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.91 E-value=0.14 Score=56.23 Aligned_cols=88 Identities=16% Similarity=0.164 Sum_probs=45.2
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCC-CCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcC
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDP-VDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKG 183 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 183 (826)
.+|++++|+.|+||||++.+++.....+..-..+..++.... ....+-++...+.++.......+..+....+ ..+.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-HhccC
Confidence 479999999999999999999974322221123445544321 1222333444444443221111112222222 22333
Q ss_pred CceeEEeccCC
Q 003367 184 KKFLLVLDDVW 194 (826)
Q Consensus 184 k~~LlVlDdv~ 194 (826)
+ -.+++|-..
T Consensus 335 ~-d~VLIDTaG 344 (484)
T PRK06995 335 K-HIVLIDTIG 344 (484)
T ss_pred C-CeEEeCCCC
Confidence 3 477788874
No 446
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.91 E-value=0.19 Score=48.66 Aligned_cols=22 Identities=32% Similarity=0.631 Sum_probs=20.8
Q ss_pred cEEEEEecCCCcHHHHHHHHhc
Q 003367 106 PIISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~ 127 (826)
.+++|+|..|.|||||++.++.
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999996
No 447
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.90 E-value=0.15 Score=50.45 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 003367 107 IISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.|.|+|++|+||||+|+.++..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEK 23 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999873
No 448
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.88 E-value=0.45 Score=45.57 Aligned_cols=23 Identities=39% Similarity=0.562 Sum_probs=21.2
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+++|+|..|.|||||++.++.-
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 449
>PRK06217 hypothetical protein; Validated
Probab=94.86 E-value=0.043 Score=52.71 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHhccc
Q 003367 107 IISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
.|.|.|.+|.||||+|+++....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999854
No 450
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.85 E-value=0.07 Score=61.17 Aligned_cols=76 Identities=16% Similarity=0.198 Sum_probs=51.9
Q ss_pred CCccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHH
Q 003367 77 VSKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAI 156 (826)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 156 (826)
..+++|.++..+.+...+... +.+.++|++|+||||+|+.+++... ...|...+++ .....+...++..+
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~~l~-~~~~~~~~~~-~n~~~~~~~~~~~v 86 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAELLP-DEELEDILVY-PNPEDPNMPRIVEV 86 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHHHcC-chhheeEEEE-eCCCCCchHHHHHH
Confidence 356899999988888877543 2466999999999999999998432 2233333332 23334556667777
Q ss_pred HHHhcc
Q 003367 157 LESFRD 162 (826)
Q Consensus 157 ~~~l~~ 162 (826)
+..++.
T Consensus 87 ~~~~g~ 92 (608)
T TIGR00764 87 PAGEGR 92 (608)
T ss_pred HHhhch
Confidence 777664
No 451
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.39 Score=47.81 Aligned_cols=95 Identities=17% Similarity=0.309 Sum_probs=56.6
Q ss_pred ccccchHHHHHHHHHHcCCCC------CCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHH
Q 003367 79 KVRGRDEEKKTIIDLLLGSSS------QEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRV 152 (826)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 152 (826)
++-|-+...+.|.+...-+-. ......+-|.++|++|.||+-||++|+.... .. |.++|..
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--ST-----FFSvSSS------ 200 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--ST-----FFSVSSS------ 200 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--Cc-----eEEeehH------
Confidence 467888888777765432210 1234577899999999999999999998432 22 2344432
Q ss_pred HHHHHHHhcccchhhhhHHHHHHHHHHHh-cCCceeEEeccCC
Q 003367 153 AKAILESFRDVVSAVAAFDTLLRHIEKSV-KGKKFLLVLDDVW 194 (826)
Q Consensus 153 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~ 194 (826)
++.....+. -+.++..+.+.. ..|+.+|.+|.|.
T Consensus 201 --DLvSKWmGE------SEkLVknLFemARe~kPSIIFiDEiD 235 (439)
T KOG0739|consen 201 --DLVSKWMGE------SEKLVKNLFEMARENKPSIIFIDEID 235 (439)
T ss_pred --HHHHHHhcc------HHHHHHHHHHHHHhcCCcEEEeehhh
Confidence 122222211 123333333322 5789999999994
No 452
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.85 E-value=0.037 Score=57.44 Aligned_cols=48 Identities=27% Similarity=0.236 Sum_probs=33.1
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHH
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAK 154 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 154 (826)
.++|.+.|.|||||||+|.+.+-... .....+.-|+.....+..+++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA--~~g~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLA--ESGKKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHH--HcCCcEEEEEeCCCCchHhhhc
Confidence 47899999999999999999776333 3334466666655555544443
No 453
>PRK15453 phosphoribulokinase; Provisional
Probab=94.85 E-value=0.11 Score=52.43 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=22.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
...+|+|.|.+|.||||+|+++++.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~i 28 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKI 28 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5579999999999999999999863
No 454
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.83 E-value=0.64 Score=45.46 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=21.3
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+++|.|..|.|||||++.++.-
T Consensus 32 ~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 32 ELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 58999999999999999999874
No 455
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.83 E-value=0.36 Score=47.95 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.5
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
-.+++|.|..|.|||||++.++.-
T Consensus 30 G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999863
No 456
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.82 E-value=0.017 Score=58.92 Aligned_cols=87 Identities=25% Similarity=0.405 Sum_probs=46.5
Q ss_pred HHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhh
Q 003367 88 KTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAV 167 (826)
Q Consensus 88 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 167 (826)
..+++.+.... +-|.++|+.|+|||++++........ ..| .+.-++++...+...+++.+-..+.......
T Consensus 23 ~~ll~~l~~~~-------~pvLl~G~~GtGKT~li~~~l~~l~~-~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~ 93 (272)
T PF12775_consen 23 SYLLDLLLSNG-------RPVLLVGPSGTGKTSLIQNFLSSLDS-DKY-LVITINFSAQTTSNQLQKIIESKLEKRRGRV 93 (272)
T ss_dssp HHHHHHHHHCT-------EEEEEESSTTSSHHHHHHHHHHCSTT-CCE-EEEEEES-TTHHHHHHHHCCCTTECECTTEE
T ss_pred HHHHHHHHHcC-------CcEEEECCCCCchhHHHHhhhccCCc-ccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCCCC
Confidence 34555555432 35789999999999999998864321 111 2334566655444333322211111100000
Q ss_pred hhHHHHHHHHHHHhcCCceeEEeccC
Q 003367 168 AAFDTLLRHIEKSVKGKKFLLVLDDV 193 (826)
Q Consensus 168 ~~~~~~~~~l~~~l~~k~~LlVlDdv 193 (826)
- .--.+|+.++.+||+
T Consensus 94 ~----------gP~~~k~lv~fiDDl 109 (272)
T PF12775_consen 94 Y----------GPPGGKKLVLFIDDL 109 (272)
T ss_dssp E----------EEESSSEEEEEEETT
T ss_pred C----------CCCCCcEEEEEeccc
Confidence 0 001368899999999
No 457
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.81 E-value=0.35 Score=49.00 Aligned_cols=23 Identities=43% Similarity=0.807 Sum_probs=21.3
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+++|+|..|.|||||++.++..
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 458
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.81 E-value=0.1 Score=53.08 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=24.0
Q ss_pred CCccEEEEEecCCCcHHHHHHHHhccc
Q 003367 103 MSLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 103 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
.+..+|.|.|..|.|||||+.++.+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999999999999843
No 459
>PRK09099 type III secretion system ATPase; Provisional
Probab=94.80 E-value=0.12 Score=56.02 Aligned_cols=86 Identities=19% Similarity=0.175 Sum_probs=49.0
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhccc-------chhhhhH-----HH
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDV-------VSAVAAF-----DT 172 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~~-----~~ 172 (826)
-..++|.|..|+|||||++.++..... -..+++..-.+...+.++...+...-... ..+.... ..
T Consensus 163 Gq~~~I~G~sG~GKTtLl~~ia~~~~~---d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~ 239 (441)
T PRK09099 163 GQRMGIFAPAGVGKSTLMGMFARGTQC---DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAY 239 (441)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC---CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHH
Confidence 358999999999999999999974321 12344433344445555555554332110 0111011 11
Q ss_pred HHHHHHHHh--cCCceeEEeccC
Q 003367 173 LLRHIEKSV--KGKKFLLVLDDV 193 (826)
Q Consensus 173 ~~~~l~~~l--~~k~~LlVlDdv 193 (826)
..-.+.+++ +++.+|+++||+
T Consensus 240 ~a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 240 VATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 122233333 589999999999
No 460
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.80 E-value=0.29 Score=51.71 Aligned_cols=104 Identities=22% Similarity=0.241 Sum_probs=55.7
Q ss_pred ccEEEEEecCCCcHHH-HHHHHhcccccccCCCcEEEEEeCCC-CCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhc
Q 003367 105 LPIISILGTGGVGKTT-LARLVFNEVKVDAHFDKRIWVCFSDP-VDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVK 182 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTt-La~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 182 (826)
-++|.++|+.|||||| ||+..+.-. ....=..+..++...- ....+-++..++-++.+-....+..++...+... +
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~-~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l-~ 280 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYV-MLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL-R 280 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH-hhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-h
Confidence 6899999999999996 555554422 1122234566654332 1223334445555555444344444444444433 2
Q ss_pred CCceeEEeccCCCC--ChhhHHHHHhhhcCC
Q 003367 183 GKKFLLVLDDVWSG--NPTKWEELVSTLKFG 211 (826)
Q Consensus 183 ~k~~LlVlDdv~~~--~~~~~~~l~~~~~~~ 211 (826)
+. =+|.+|=+... +....+.+...+...
T Consensus 281 ~~-d~ILVDTaGrs~~D~~~i~el~~~~~~~ 310 (407)
T COG1419 281 DC-DVILVDTAGRSQYDKEKIEELKELIDVS 310 (407)
T ss_pred cC-CEEEEeCCCCCccCHHHHHHHHHHHhcc
Confidence 23 46667877442 344555566665544
No 461
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.79 E-value=0.042 Score=47.83 Aligned_cols=51 Identities=18% Similarity=0.322 Sum_probs=35.3
Q ss_pred CccccchHHHHHHHHHHcCCC-CCCCCCccEEEEEecCCCcHHHHHHHHhcc
Q 003367 78 SKVRGRDEEKKTIIDLLLGSS-SQEKMSLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~-~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
..++|..-..+.+.+.+..-- .+....+-|++.+|..|+|||.+|+.+++.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 347777766665555543211 113457789999999999999988888875
No 462
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=94.77 E-value=0.5 Score=47.03 Aligned_cols=23 Identities=30% Similarity=0.645 Sum_probs=21.1
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+++|+|..|.|||||++.++..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 27 SVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999864
No 463
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=94.75 E-value=0.34 Score=48.25 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=30.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCC
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDP 146 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 146 (826)
.-.++.|.|.+|+|||++|.+++...- ..=..++|++...+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~--~~g~~~~y~s~e~~ 55 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGL--KNGEKAMYISLEER 55 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCC
Confidence 356899999999999999999986321 22345778887663
No 464
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.72 E-value=0.12 Score=55.92 Aligned_cols=85 Identities=20% Similarity=0.159 Sum_probs=46.8
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhccc-------chhhhhH-----HHH
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDV-------VSAVAAF-----DTL 173 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~~-----~~~ 173 (826)
..++|+|..|+|||||++.++.... ....++...-.....+.++....+..-+.. ..+.... ...
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~ 217 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARNTD---ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYT 217 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHH
Confidence 5799999999999999999987432 222233222233334445555443321110 0111111 111
Q ss_pred HHHHHHHh--cCCceeEEeccC
Q 003367 174 LRHIEKSV--KGKKFLLVLDDV 193 (826)
Q Consensus 174 ~~~l~~~l--~~k~~LlVlDdv 193 (826)
.-.+.+++ +++.+|+++||+
T Consensus 218 a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 218 ATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 22233333 589999999999
No 465
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.72 E-value=0.16 Score=53.22 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=23.8
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVK 130 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 130 (826)
...+|+++|++|+||||++.+++....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 568999999999999999999998543
No 466
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.70 E-value=0.025 Score=53.83 Aligned_cols=24 Identities=38% Similarity=0.599 Sum_probs=21.9
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
...|.|+|++|+||||+|++++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999984
No 467
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.67 E-value=0.023 Score=51.87 Aligned_cols=20 Identities=55% Similarity=0.841 Sum_probs=18.9
Q ss_pred EEEEEecCCCcHHHHHHHHh
Q 003367 107 IISILGTGGVGKTTLARLVF 126 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~ 126 (826)
.|+|.|.+|+||||+|..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999988
No 468
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.66 E-value=0.065 Score=54.80 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=38.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
.-+++.|+|.+|+|||++|.++.. +.......++||+..+. ...+.+...
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~--~~~l~~~~~ 71 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES--PEELLENAR 71 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC--HHHHHHHHH
Confidence 457999999999999999999998 44456788999998773 344444443
No 469
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.66 E-value=0.4 Score=48.25 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=21.3
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+++|+|..|.|||||++.++.-
T Consensus 30 e~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 30 KTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred CEEEEEeCCCCCHHHHHHHHhcc
Confidence 58999999999999999999874
No 470
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.66 E-value=0.052 Score=52.00 Aligned_cols=42 Identities=31% Similarity=0.466 Sum_probs=32.6
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhc
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 127 (826)
.+++|.+..+..+.-..... .-|.++|.+|+|||++|+.+..
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~--------h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG--------HHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC----------EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcCC--------CCeEEECCCCCCHHHHHHHHHH
Confidence 56889998888877766532 3589999999999999999975
No 471
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.65 E-value=0.045 Score=52.64 Aligned_cols=42 Identities=31% Similarity=0.439 Sum_probs=28.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCH
Q 003367 107 IISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDE 149 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 149 (826)
.|+|+|-||+||||+|..++....-++-| .+.-|+...+++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~-~VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGY-NVLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCc-eEEEEeCCCCCCh
Confidence 58999999999999999865533222223 3555666665543
No 472
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.65 E-value=0.12 Score=52.76 Aligned_cols=55 Identities=31% Similarity=0.431 Sum_probs=40.8
Q ss_pred CCccccchHHHHH---HHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCC
Q 003367 77 VSKVRGRDEEKKT---IIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHF 135 (826)
Q Consensus 77 ~~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f 135 (826)
...+||..+..+. ++++.... ...-+.|.|+|++|.|||+||..+++..-..-.|
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~g----k~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF 95 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQG----KMAGRGILIVGPPGTGKTALAMGIARELGEDVPF 95 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhC----cccccEEEEECCCCCcHHHHHHHHHHHhCCCCCc
Confidence 3569998877765 56666443 2355789999999999999999999965444455
No 473
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.63 E-value=0.24 Score=51.74 Aligned_cols=49 Identities=20% Similarity=0.116 Sum_probs=33.5
Q ss_pred eEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhH
Q 003367 235 MILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAA 284 (826)
Q Consensus 235 ~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal 284 (826)
.+++++++.+|+..++..++-.+--.. ....+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~-~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRS-RVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcccc-CCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999988764332211 1223455666777778988643
No 474
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.62 E-value=0.14 Score=55.35 Aligned_cols=85 Identities=19% Similarity=0.198 Sum_probs=46.8
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCC-CCHHHHHHHHHHHhcc-------cchhhhh-----HH
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDP-VDEIRVAKAILESFRD-------VVSAVAA-----FD 171 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~-------~~~~~~~-----~~ 171 (826)
-..++|+|..|+|||||++.++.... .+..+.+.+.+. ..+.++.......=.. ...+... ..
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~ 212 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAA 212 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHH
Confidence 35799999999999999999987432 233334444443 3344444444332110 0011101 11
Q ss_pred HHHHHHHHHh--cCCceeEEeccC
Q 003367 172 TLLRHIEKSV--KGKKFLLVLDDV 193 (826)
Q Consensus 172 ~~~~~l~~~l--~~k~~LlVlDdv 193 (826)
...-.+.+++ +++++|+++||+
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dsl 236 (411)
T TIGR03496 213 FYATAIAEYFRDQGKDVLLLMDSL 236 (411)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCh
Confidence 1122233333 589999999999
No 475
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.61 E-value=0.45 Score=47.55 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=21.2
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+++|+|..|.|||||.+.++..
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999864
No 476
>PRK13949 shikimate kinase; Provisional
Probab=94.60 E-value=0.06 Score=50.75 Aligned_cols=23 Identities=39% Similarity=0.541 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhccc
Q 003367 107 IISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
-|.|+|+.|.||||+|+.++...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999843
No 477
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.60 E-value=0.48 Score=48.42 Aligned_cols=131 Identities=11% Similarity=0.062 Sum_probs=74.7
Q ss_pred HHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhccccccc------------CCCcEEEEEeCCCCCHHHHH
Q 003367 86 EKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDA------------HFDKRIWVCFSDPVDEIRVA 153 (826)
Q Consensus 86 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~------------~f~~~~wv~~~~~~~~~~~~ 153 (826)
..+++...+... .-..-..++|+.|+||+++|.+++...-... |-| +.|+.-...
T Consensus 5 ~~~~L~~~i~~~-----rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD-~~~i~p~~~------- 71 (290)
T PRK05917 5 AWEALIQRVRDQ-----KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPD-IHEFSPQGK------- 71 (290)
T ss_pred HHHHHHHHHHcC-----CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCC-EEEEecCCC-------
Confidence 345666666443 2345677999999999999999987432111 111 111110000
Q ss_pred HHHHHHhcccchhhhhHHHHHHHHHHHh-----cCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEeccc-HHHH
Q 003367 154 KAILESFRDVVSAVAAFDTLLRHIEKSV-----KGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRK-EDVA 227 (826)
Q Consensus 154 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~-~~v~ 227 (826)
...-.++++.+ +.+.+ .++.-++|+|++..-+.+.+..++..+....+++.+|++|.+ ..+.
T Consensus 72 -----------~~~I~idqiR~-l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll 139 (290)
T PRK05917 72 -----------GRLHSIETPRA-IKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLP 139 (290)
T ss_pred -----------CCcCcHHHHHH-HHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCc
Confidence 00011222221 22222 355668999999777788889999988877777776666665 4443
Q ss_pred hhc-cccceEEccCC
Q 003367 228 KMM-RTTSMILLAKL 241 (826)
Q Consensus 228 ~~~-~~~~~~~l~~L 241 (826)
... .-...+.+.++
T Consensus 140 ~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 140 PTIRSRSLSIHIPME 154 (290)
T ss_pred HHHHhcceEEEccch
Confidence 332 22446666655
No 478
>PRK14528 adenylate kinase; Provisional
Probab=94.59 E-value=0.089 Score=50.59 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.5
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
+.|.|.|++|+||||+|+.++..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~ 24 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCER 24 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999999999873
No 479
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=94.58 E-value=0.089 Score=59.03 Aligned_cols=47 Identities=21% Similarity=0.280 Sum_probs=37.5
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcc
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
..++|....++++.+.+..-+. .-.-|.|.|..|+||+++|+.+++.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~----~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYAR----SDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCcCHHHHHHHHHHh
Confidence 4589999998888887754332 2246889999999999999999973
No 480
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=94.57 E-value=0.09 Score=54.75 Aligned_cols=157 Identities=16% Similarity=0.242 Sum_probs=79.6
Q ss_pred cccchHHHHHHHHHHcCCCCC-----------CCCCccEEEEEecCCCcHHHHHHHHhccccccc--CC---CcEEEEEe
Q 003367 80 VRGRDEEKKTIIDLLLGSSSQ-----------EKMSLPIISILGTGGVGKTTLARLVFNEVKVDA--HF---DKRIWVCF 143 (826)
Q Consensus 80 ~vGr~~~~~~l~~~L~~~~~~-----------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~f---~~~~wv~~ 143 (826)
..|-..+...|.+.+-..... .-..-.+++|+|.+|+||||+.+.+........ .| .+.+-|..
T Consensus 373 ~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~ 452 (593)
T COG2401 373 IKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPK 452 (593)
T ss_pred cccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccc
Confidence 445566677766655321100 012235899999999999999999976322111 11 11222111
Q ss_pred -----------CCCCCHHHHHHHHHHHhcc-------------cc--------hhhhhHHHHHHHHHHHhcCCceeEEec
Q 003367 144 -----------SDPVDEIRVAKAILESFRD-------------VV--------SAVAAFDTLLRHIEKSVKGKKFLLVLD 191 (826)
Q Consensus 144 -----------~~~~~~~~~~~~i~~~l~~-------------~~--------~~~~~~~~~~~~l~~~l~~k~~LlVlD 191 (826)
...++...++.++.+..+. .+ ....+...-...|.+.+..+.-+++.|
T Consensus 453 nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iD 532 (593)
T COG2401 453 NTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLID 532 (593)
T ss_pred cchhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhh
Confidence 1122323444444443332 10 011111222345677777888899999
Q ss_pred cCCCC-ChhhHHHHHhhhcCC--CCCcEEEEecccHHHHhhccccceE
Q 003367 192 DVWSG-NPTKWEELVSTLKFG--SPESRILVTTRKEDVAKMMRTTSMI 236 (826)
Q Consensus 192 dv~~~-~~~~~~~l~~~~~~~--~~~s~iivTtR~~~v~~~~~~~~~~ 236 (826)
..... |......+...+... ..|+-+++.|+.+++.+.+..+..+
T Consensus 533 EF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li 580 (593)
T COG2401 533 EFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLI 580 (593)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeE
Confidence 98331 112222233333322 2566666666667777766555443
No 481
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.56 E-value=0.36 Score=50.68 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=19.7
Q ss_pred EEEEecCCCcHHHHHHHHhccc
Q 003367 108 ISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 108 v~I~G~gGiGKTtLa~~v~~~~ 129 (826)
+++.|++|.||||+|+.+.+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999754
No 482
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.56 E-value=0.022 Score=54.35 Aligned_cols=22 Identities=45% Similarity=0.592 Sum_probs=20.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 003367 107 IISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
+|+|.|.+|.||||+|+.++..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999984
No 483
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.56 E-value=0.2 Score=55.32 Aligned_cols=40 Identities=28% Similarity=0.294 Sum_probs=30.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCC
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSD 145 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 145 (826)
.-.++.|.|.+|+|||||+.+++.... ..-..++|++..+
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a--~~g~kvlYvs~EE 132 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLA--KNQMKVLYVSGEE 132 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH--hcCCcEEEEECcC
Confidence 446899999999999999999987432 2223577887654
No 484
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.55 E-value=0.074 Score=56.58 Aligned_cols=101 Identities=15% Similarity=0.191 Sum_probs=56.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHhccccc----ccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHH
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKV----DAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEK 179 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 179 (826)
.++=+.|||..|.|||.|+-.+|+...+ +-||. .+..++.+.+....... .....+.+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~~~----~~l~~va~ 122 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRGQD----DPLPQVAD 122 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhCCC----ccHHHHHH
Confidence 5677999999999999999999986543 22332 22333333332111111 12333445
Q ss_pred HhcCCceeEEeccCCCCChhhHHHHHhhhcC-CCCCcEEEEecc
Q 003367 180 SVKGKKFLLVLDDVWSGNPTKWEELVSTLKF-GSPESRILVTTR 222 (826)
Q Consensus 180 ~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~-~~~~s~iivTtR 222 (826)
.+.++..||.||.+.=.|..+---+...+.. ...|..+|.||.
T Consensus 123 ~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN 166 (362)
T PF03969_consen 123 ELAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGVVLVATSN 166 (362)
T ss_pred HHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCC
Confidence 5566777999999854444432223333332 245555555554
No 485
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.55 E-value=0.14 Score=56.55 Aligned_cols=81 Identities=25% Similarity=0.286 Sum_probs=47.1
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccch-----hhhhHHHHHHHHHH
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVS-----AVAAFDTLLRHIEK 179 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 179 (826)
-.++.|.|.+|+|||||+.+++.... ..-..++|++..+. ...+.. -++.++.... ...+.+++.+.+.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a--~~g~~vlYvs~Ees--~~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLA--AAGGKVLYVSGEES--ASQIKL-RAERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcccc--HHHHHH-HHHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 45899999999999999999988432 22245778876543 233322 2344442111 11233444443322
Q ss_pred HhcCCceeEEeccC
Q 003367 180 SVKGKKFLLVLDDV 193 (826)
Q Consensus 180 ~l~~k~~LlVlDdv 193 (826)
.+.-+||+|.+
T Consensus 155 ---~~~~lVVIDSI 165 (446)
T PRK11823 155 ---EKPDLVVIDSI 165 (446)
T ss_pred ---hCCCEEEEech
Confidence 34557888887
No 486
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.54 E-value=0.022 Score=55.64 Aligned_cols=22 Identities=45% Similarity=0.697 Sum_probs=20.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 003367 107 IISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
+|+|.|..|+||||+|+.+..-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 487
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.54 E-value=0.087 Score=52.58 Aligned_cols=77 Identities=18% Similarity=0.119 Sum_probs=42.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCC--CCHHHHHHHHHHH----hcccc--hhhhhHHHHHHHHH
Q 003367 107 IISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDP--VDEIRVAKAILES----FRDVV--SAVAAFDTLLRHIE 178 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~----l~~~~--~~~~~~~~~~~~l~ 178 (826)
+|+|.|..|.||||+|+++..... ..-..+..++...- .+....-..+... ..-.. +...+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~--~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA--REGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH--hcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 589999999999999999987432 11112333332221 2222222222221 11122 45566777777777
Q ss_pred HHhcCCc
Q 003367 179 KSVKGKK 185 (826)
Q Consensus 179 ~~l~~k~ 185 (826)
.+.+++.
T Consensus 79 ~L~~g~~ 85 (277)
T cd02029 79 TYGETGR 85 (277)
T ss_pred HHHcCCC
Confidence 7766543
No 488
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.53 E-value=0.027 Score=53.98 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.2
Q ss_pred cEEEEEecCCCcHHHHHHHHhccc
Q 003367 106 PIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
++++|+|+.|+||||+|+.++...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 378999999999999999998743
No 489
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.53 E-value=0.13 Score=56.02 Aligned_cols=87 Identities=17% Similarity=0.206 Sum_probs=51.2
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCC-CCHHHHHHHHHHHhccc-------chhhhh-----HHH
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDP-VDEIRVAKAILESFRDV-------VSAVAA-----FDT 172 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~-----~~~ 172 (826)
+.++|.|.+|+|||||+.+++....... =+.++++-+.+. ..+.++...+...=... ..+... ...
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~ 223 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVAL 223 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 5699999999999999999876432111 134566666543 34455666665431110 011111 112
Q ss_pred HHHHHHHHh---cCCceeEEeccC
Q 003367 173 LLRHIEKSV---KGKKFLLVLDDV 193 (826)
Q Consensus 173 ~~~~l~~~l---~~k~~LlVlDdv 193 (826)
..-.+.+++ +++++||++|++
T Consensus 224 ~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 224 TGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHhcCCceEEEecch
Confidence 223344444 689999999999
No 490
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=94.52 E-value=0.047 Score=56.84 Aligned_cols=44 Identities=25% Similarity=0.241 Sum_probs=28.9
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHH
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIR 151 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 151 (826)
|++.+.|-|||||||+|.+.+-.... .=..+.-|+.....+..+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~--~G~rtLlvS~Dpa~~L~d 45 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALAR--RGKRTLLVSTDPAHSLSD 45 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH--TTS-EEEEESSTTTHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhh--CCCCeeEeecCCCccHHH
Confidence 68999999999999999888764332 223355555544444333
No 491
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.48 E-value=0.028 Score=53.53 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=21.3
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
++|.+.|++|+||||+|+++...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999874
No 492
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=94.47 E-value=0.5 Score=43.66 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=19.5
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 003367 108 ISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 108 v~I~G~gGiGKTtLa~~v~~~ 128 (826)
|+|+|..|+|||||.+.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 789999999999999999875
No 493
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.46 E-value=0.036 Score=51.86 Aligned_cols=26 Identities=31% Similarity=0.570 Sum_probs=23.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHhccc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
...+++|+|..|.|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 56799999999999999999999744
No 494
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=94.46 E-value=0.18 Score=45.83 Aligned_cols=37 Identities=27% Similarity=0.454 Sum_probs=28.4
Q ss_pred EEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeC
Q 003367 107 IISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFS 144 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 144 (826)
-+.|+|-||+||+++.+.+|.-. ..+.|...+||++.
T Consensus 22 K~vivGng~VGKssmiqryCkgi-fTkdykktIgvdfl 58 (246)
T KOG4252|consen 22 KFVIVGNGSVGKSSMIQRYCKGI-FTKDYKKTIGVDFL 58 (246)
T ss_pred EEEEECCCccchHHHHHHHhccc-cccccccccchhhh
Confidence 36799999999999999999742 23455667888654
No 495
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=94.46 E-value=0.15 Score=55.01 Aligned_cols=88 Identities=15% Similarity=0.200 Sum_probs=52.1
Q ss_pred cEEEEEecCCCcHHHHHHHHhccccccc--CCC---------cEEEEEeCCCCCHHHHHHHHHHHhc-cc-------chh
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDA--HFD---------KRIWVCFSDPVDEIRVAKAILESFR-DV-------VSA 166 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~f~---------~~~wv~~~~~~~~~~~~~~i~~~l~-~~-------~~~ 166 (826)
+.++|.|-+|+|||||+..+++..+... -.| .++++-+.+.....+.+.+.+..-+ .. ..+
T Consensus 142 QRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd 221 (466)
T TIGR01040 142 QKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLAN 221 (466)
T ss_pred CeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCC
Confidence 5689999999999999999997543100 011 4566666666555555555554433 11 111
Q ss_pred hhhHH-----HHHHHHHHHh---cCCceeEEeccC
Q 003367 167 VAAFD-----TLLRHIEKSV---KGKKFLLVLDDV 193 (826)
Q Consensus 167 ~~~~~-----~~~~~l~~~l---~~k~~LlVlDdv 193 (826)
..... ...-.+.+++ +++++|+++||+
T Consensus 222 ~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~Dsl 256 (466)
T TIGR01040 222 DPTIERIITPRLALTTAEYLAYQCEKHVLVILTDM 256 (466)
T ss_pred CCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccCh
Confidence 11111 1222344444 469999999999
No 496
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.46 E-value=0.14 Score=49.78 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHhccc
Q 003367 107 IISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
+|+|.|+.|+||||+++.+++..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999854
No 497
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.45 E-value=0.16 Score=54.49 Aligned_cols=23 Identities=43% Similarity=0.723 Sum_probs=20.6
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+++|+|+.|.||||||+.+.--
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG~ 385 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVGI 385 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHcc
Confidence 37999999999999999999653
No 498
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.45 E-value=0.34 Score=46.94 Aligned_cols=21 Identities=38% Similarity=0.495 Sum_probs=19.6
Q ss_pred EEEEecCCCcHHHHHHHHhcc
Q 003367 108 ISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 108 v~I~G~gGiGKTtLa~~v~~~ 128 (826)
|.|.|++|+||||+|+.++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999984
No 499
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.45 E-value=0.45 Score=46.49 Aligned_cols=61 Identities=13% Similarity=0.230 Sum_probs=35.5
Q ss_pred HHHHhcCCceeEEeccCCCC-ChhhHH-HHHhhhcCCCC--CcEEEEecccHHHHhhccccceEEcc
Q 003367 177 IEKSVKGKKFLLVLDDVWSG-NPTKWE-ELVSTLKFGSP--ESRILVTTRKEDVAKMMRTTSMILLA 239 (826)
Q Consensus 177 l~~~l~~k~~LlVlDdv~~~-~~~~~~-~l~~~~~~~~~--~s~iivTtR~~~v~~~~~~~~~~~l~ 239 (826)
+.+.+...+-++++|+.-.. +....+ .+...+..... |.-||++|.+...... .+.++.+.
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~--~d~i~~l~ 196 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA--ADHIYRVE 196 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh--CCEEEEEe
Confidence 44556678889999998432 333334 44444433222 5568888887766543 34555554
No 500
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.43 E-value=0.25 Score=57.42 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=33.3
Q ss_pred HHHHHhcCCceeEEeccCCCC-ChhhHHHHHhhhcC-CCCCcEEEEecccHHHHh
Q 003367 176 HIEKSVKGKKFLLVLDDVWSG-NPTKWEELVSTLKF-GSPESRILVTTRKEDVAK 228 (826)
Q Consensus 176 ~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~~~~-~~~~s~iivTtR~~~v~~ 228 (826)
.+.+.+-.++-+++||..-+. |.+.=..+...+.. ....+.|+||-|...+..
T Consensus 619 alARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~ 673 (709)
T COG2274 619 ALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRS 673 (709)
T ss_pred HHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhh
Confidence 456667788899999998442 22222334444443 344678899999766543
Done!