Query 003367
Match_columns 826
No_of_seqs 671 out of 4443
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 22:52:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003367.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003367hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 4.1E-47 1.4E-51 431.2 25.3 315 81-422 131-472 (549)
2 1vt4_I APAF-1 related killer D 100.0 5.2E-39 1.8E-43 366.0 19.9 284 80-414 130-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 2.8E-36 9.7E-41 380.7 22.1 311 76-421 122-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 4.6E-34 1.6E-38 329.7 21.3 305 76-417 122-448 (591)
5 3rgz_A Protein brassinosteroid 99.9 4.2E-27 1.4E-31 279.4 11.1 344 453-826 309-767 (768)
6 3v47_A TOLL-like receptor 5B a 99.9 2.6E-25 9E-30 248.5 18.1 336 424-803 29-407 (455)
7 4eco_A Uncharacterized protein 99.9 3.9E-25 1.3E-29 256.2 16.3 336 449-802 194-598 (636)
8 4ecn_A Leucine-rich repeat pro 99.9 1.8E-24 6.1E-29 254.6 17.0 331 454-803 440-839 (876)
9 4eco_A Uncharacterized protein 99.9 2.2E-24 7.7E-29 249.9 17.6 346 417-805 239-633 (636)
10 4ecn_A Leucine-rich repeat pro 99.9 3.1E-24 1.1E-28 252.5 18.8 133 653-804 729-872 (876)
11 3o6n_A APL1; leucine-rich repe 99.9 5.6E-24 1.9E-28 232.2 19.3 304 424-803 44-351 (390)
12 3t6q_A CD180 antigen; protein- 99.9 4.1E-24 1.4E-28 247.9 17.9 346 424-802 32-460 (606)
13 3vq2_A TLR4, TOLL-like recepto 99.9 8.4E-24 2.9E-28 245.3 18.6 150 647-803 394-557 (606)
14 3rgz_A Protein brassinosteroid 99.9 2.6E-24 8.8E-29 255.4 14.3 304 454-803 239-550 (768)
15 3oja_B Anopheles plasmodium-re 99.9 9E-24 3.1E-28 243.5 18.3 288 453-803 66-357 (597)
16 2id5_A Lingo-1, leucine rich r 99.9 2.4E-23 8.3E-28 233.8 21.3 296 424-802 31-331 (477)
17 3vq2_A TLR4, TOLL-like recepto 99.9 2.4E-23 8.2E-28 241.5 21.1 343 424-803 31-436 (606)
18 2z7x_B TOLL-like receptor 1, v 99.9 2.9E-23 9.8E-28 236.0 18.9 345 425-803 21-480 (520)
19 3j0a_A TOLL-like receptor 5; m 99.9 7.6E-23 2.6E-27 245.4 22.8 134 423-574 22-160 (844)
20 4fmz_A Internalin; leucine ric 99.9 4.8E-23 1.6E-27 221.2 18.9 302 424-802 43-344 (347)
21 4fmz_A Internalin; leucine ric 99.9 3.5E-23 1.2E-27 222.3 16.4 284 458-803 40-323 (347)
22 3v47_A TOLL-like receptor 5B a 99.9 2.4E-23 8.1E-28 232.6 15.5 306 462-802 30-382 (455)
23 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.1E-22 3.8E-27 233.1 21.0 344 425-803 52-509 (562)
24 4fcg_A Uncharacterized protein 99.9 4.9E-23 1.7E-27 218.2 16.1 232 460-801 79-311 (328)
25 3t6q_A CD180 antigen; protein- 99.9 6.3E-23 2.2E-27 238.0 17.5 313 463-802 34-436 (606)
26 1ogq_A PGIP-2, polygalacturona 99.9 1.8E-23 6.1E-28 220.2 10.9 256 425-784 50-308 (313)
27 2z81_A CD282 antigen, TOLL-lik 99.9 7.8E-23 2.7E-27 234.2 16.4 147 647-803 356-509 (549)
28 2z63_A TOLL-like receptor 4, v 99.9 1E-22 3.4E-27 234.6 16.6 134 650-803 394-530 (570)
29 3bz5_A Internalin-J, INLJ; leu 99.9 1.2E-21 4E-26 217.1 24.1 305 424-802 41-350 (457)
30 3o6n_A APL1; leucine-rich repe 99.9 1.1E-22 3.7E-27 222.0 15.3 286 460-803 43-330 (390)
31 1o6v_A Internalin A; bacterial 99.9 3.2E-22 1.1E-26 223.6 19.0 284 458-803 86-387 (466)
32 1o6v_A Internalin A; bacterial 99.9 5.4E-22 1.8E-26 221.7 20.5 308 425-803 46-365 (466)
33 1ogq_A PGIP-2, polygalacturona 99.9 1.3E-23 4.4E-28 221.3 6.5 252 462-805 50-305 (313)
34 2id5_A Lingo-1, leucine rich r 99.9 5.7E-22 2E-26 222.6 20.4 273 462-802 32-307 (477)
35 4fcg_A Uncharacterized protein 99.9 3.6E-22 1.2E-26 211.5 16.0 112 453-571 95-215 (328)
36 2z7x_B TOLL-like receptor 1, v 99.9 3.4E-22 1.2E-26 227.2 16.3 320 454-802 15-455 (520)
37 1ziw_A TOLL-like receptor 3; i 99.9 6E-22 2.1E-26 232.9 18.4 328 424-802 24-392 (680)
38 3oja_B Anopheles plasmodium-re 99.9 3.4E-22 1.2E-26 230.3 15.5 286 460-803 49-336 (597)
39 3bz5_A Internalin-J, INLJ; leu 99.9 6.5E-22 2.2E-26 219.1 17.1 276 455-801 35-328 (457)
40 1ziw_A TOLL-like receptor 3; i 99.9 4.4E-22 1.5E-26 234.1 16.4 132 424-574 48-183 (680)
41 2ft3_A Biglycan; proteoglycan, 99.9 1.1E-21 3.9E-26 208.8 17.0 294 463-802 34-331 (332)
42 3j0a_A TOLL-like receptor 5; m 99.9 5.8E-21 2E-25 229.0 25.1 262 422-710 45-373 (844)
43 1xku_A Decorin; proteoglycan, 99.9 3.2E-21 1.1E-25 205.1 17.4 293 463-801 32-329 (330)
44 4g8a_A TOLL-like receptor 4; l 99.9 4.5E-21 1.5E-25 223.9 18.9 131 424-574 51-185 (635)
45 2ft3_A Biglycan; proteoglycan, 99.9 2E-20 7E-25 199.1 20.7 274 462-778 54-331 (332)
46 2z81_A CD282 antigen, TOLL-lik 99.8 4.7E-21 1.6E-25 219.4 16.3 58 652-710 310-372 (549)
47 1xku_A Decorin; proteoglycan, 99.8 1.2E-20 4E-25 200.8 18.2 139 620-778 192-330 (330)
48 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 7.9E-21 2.7E-25 217.7 18.1 311 462-802 52-484 (562)
49 2z63_A TOLL-like receptor 4, v 99.8 3.9E-21 1.3E-25 221.3 15.0 120 449-574 39-161 (570)
50 2z66_A Variable lymphocyte rec 99.8 2.2E-20 7.6E-25 196.4 14.9 236 479-802 18-259 (306)
51 2z80_A TOLL-like receptor 2, v 99.8 9E-21 3.1E-25 203.7 11.2 256 462-803 52-313 (353)
52 3zyi_A Leucine-rich repeat-con 99.8 1.5E-19 5E-24 201.1 20.1 93 479-573 65-158 (452)
53 3zyj_A Leucine-rich repeat-con 99.8 2E-19 7E-24 199.2 20.6 93 479-573 54-147 (440)
54 1jl5_A Outer protein YOPM; leu 99.8 2.1E-18 7.2E-23 190.7 21.3 270 462-803 111-408 (454)
55 3zyi_A Leucine-rich repeat-con 99.8 5.3E-19 1.8E-23 196.6 16.1 224 462-748 75-301 (452)
56 3zyj_A Leucine-rich repeat-con 99.8 6.3E-19 2.2E-23 195.2 16.6 224 462-748 64-290 (440)
57 2z66_A Variable lymphocyte rec 99.8 2.9E-19 1E-23 187.8 12.6 199 462-709 28-233 (306)
58 3g06_A SSPH2 (leucine-rich rep 99.8 3.2E-18 1.1E-22 195.0 22.0 256 463-803 41-296 (622)
59 3o53_A Protein LRIM1, AGAP0063 99.8 2.3E-20 7.9E-25 197.0 2.1 256 449-783 21-278 (317)
60 1jl5_A Outer protein YOPM; leu 99.8 1.8E-18 6.2E-23 191.3 17.1 247 491-802 91-348 (454)
61 3oja_A Leucine-rich immune mol 99.8 3E-19 1E-23 199.6 10.8 128 649-799 141-270 (487)
62 4g8a_A TOLL-like receptor 4; l 99.8 3.3E-18 1.1E-22 199.6 19.9 106 462-574 52-160 (635)
63 3o53_A Protein LRIM1, AGAP0063 99.8 2.2E-19 7.6E-24 189.5 8.3 247 486-806 29-277 (317)
64 1ozn_A Reticulon 4 receptor; N 99.8 2.3E-19 7.9E-24 186.5 8.3 176 462-709 32-211 (285)
65 1ozn_A Reticulon 4 receptor; N 99.8 3.2E-18 1.1E-22 177.9 16.4 220 465-779 14-237 (285)
66 2z80_A TOLL-like receptor 2, v 99.8 6.4E-19 2.2E-23 189.2 8.4 253 459-802 28-288 (353)
67 1wwl_A Monocyte differentiatio 99.7 3.4E-20 1.1E-24 195.3 -2.9 61 649-709 198-263 (312)
68 3oja_A Leucine-rich immune mol 99.7 2E-19 6.9E-24 201.0 2.9 238 459-775 31-270 (487)
69 3g06_A SSPH2 (leucine-rich rep 99.7 5.3E-17 1.8E-21 185.0 20.8 241 462-784 61-301 (622)
70 1wwl_A Monocyte differentiatio 99.7 2.8E-18 9.5E-23 180.6 9.0 202 464-708 65-283 (312)
71 1z7x_W Ribonuclease inhibitor; 99.7 2.2E-20 7.4E-25 208.9 -8.0 344 425-802 28-409 (461)
72 3rfs_A Internalin B, repeat mo 99.7 3.7E-17 1.3E-21 168.3 14.9 176 458-708 37-214 (272)
73 1p9a_G Platelet glycoprotein I 99.7 6.3E-17 2.1E-21 167.8 16.4 58 651-708 99-157 (290)
74 1p9a_G Platelet glycoprotein I 99.7 5.3E-17 1.8E-21 168.4 15.2 198 458-707 6-203 (290)
75 2o6q_A Variable lymphocyte rec 99.7 1.8E-16 6E-21 163.0 16.8 101 463-572 17-119 (270)
76 2z62_A TOLL-like receptor 4, v 99.7 9.5E-17 3.3E-21 165.8 14.1 91 479-572 18-110 (276)
77 2z62_A TOLL-like receptor 4, v 99.7 5.3E-17 1.8E-21 167.7 12.0 201 462-707 28-232 (276)
78 2xwt_C Thyrotropin receptor; s 99.7 2.8E-16 9.7E-21 158.3 16.6 88 480-571 23-114 (239)
79 2o6q_A Variable lymphocyte rec 99.7 2.5E-16 8.7E-21 161.8 16.0 79 492-573 17-96 (270)
80 1h6u_A Internalin H; cell adhe 99.7 1.3E-16 4.5E-21 167.2 13.5 192 458-710 37-228 (308)
81 3rfs_A Internalin B, repeat mo 99.7 9E-17 3.1E-21 165.3 12.0 211 486-793 36-248 (272)
82 2xwt_C Thyrotropin receptor; s 99.7 3.3E-16 1.1E-20 157.9 14.5 94 462-562 31-127 (239)
83 1z7x_W Ribonuclease inhibitor; 99.7 1.2E-18 4E-23 194.8 -4.0 340 425-802 3-381 (461)
84 3ogk_B Coronatine-insensitive 99.7 3.1E-18 1.1E-22 197.9 -1.3 332 426-802 139-524 (592)
85 2ast_B S-phase kinase-associat 99.7 7.4E-18 2.5E-22 179.8 1.6 240 455-787 61-313 (336)
86 1h6u_A Internalin H; cell adhe 99.7 3.1E-16 1.1E-20 164.3 12.9 169 487-709 37-205 (308)
87 4ay9_X Follicle-stimulating ho 99.7 5.6E-16 1.9E-20 165.7 14.7 228 479-776 20-255 (350)
88 2qen_A Walker-type ATPase; unk 99.7 3.1E-15 1.1E-19 160.3 20.3 293 75-414 9-348 (350)
89 3m19_A Variable lymphocyte rec 99.6 1.6E-15 5.6E-20 153.9 14.7 175 462-710 14-190 (251)
90 2ca6_A RAN GTPase-activating p 99.6 1.5E-17 5E-22 181.0 -1.0 222 454-710 24-285 (386)
91 3ogk_B Coronatine-insensitive 99.6 1.5E-17 5.3E-22 192.1 -1.1 338 424-802 111-499 (592)
92 2ast_B S-phase kinase-associat 99.6 1.2E-17 4.2E-22 178.0 -2.1 247 463-806 48-307 (336)
93 4glp_A Monocyte differentiatio 99.6 6.1E-16 2.1E-20 162.5 10.7 80 650-748 222-305 (310)
94 4glp_A Monocyte differentiatio 99.6 7.3E-16 2.5E-20 161.9 10.8 199 490-778 90-305 (310)
95 1w5s_A Origin recognition comp 99.6 3.4E-15 1.2E-19 164.0 15.0 303 77-393 21-372 (412)
96 2ca6_A RAN GTPase-activating p 99.6 1.8E-17 6.2E-22 180.2 -3.7 260 479-781 20-317 (386)
97 2fna_A Conserved hypothetical 99.6 6.1E-14 2.1E-18 150.7 21.5 290 76-413 11-355 (357)
98 4ay9_X Follicle-stimulating ho 99.6 6.8E-15 2.3E-19 157.3 13.8 221 462-747 30-256 (350)
99 1h6t_A Internalin B; cell adhe 99.6 8.5E-15 2.9E-19 151.9 11.6 103 458-572 42-144 (291)
100 3m19_A Variable lymphocyte rec 99.5 3.3E-14 1.1E-18 144.2 14.4 175 491-748 14-190 (251)
101 3goz_A Leucine-rich repeat-con 99.5 6.3E-16 2.2E-20 166.2 1.4 226 449-709 9-263 (362)
102 1m9s_A Internalin B; cell inva 99.5 3.4E-14 1.2E-18 161.7 15.1 103 458-572 39-141 (605)
103 3goz_A Leucine-rich repeat-con 99.5 3.2E-15 1.1E-19 160.7 5.1 246 483-779 14-296 (362)
104 2p1m_B Transport inhibitor res 99.5 1E-15 3.4E-20 176.9 0.5 337 424-803 129-518 (594)
105 1h6t_A Internalin B; cell adhe 99.5 5E-14 1.7E-18 146.1 10.9 170 487-710 42-211 (291)
106 4ezg_A Putative uncharacterize 99.5 3.2E-14 1.1E-18 138.4 8.6 105 459-572 41-146 (197)
107 2p1m_B Transport inhibitor res 99.5 9.6E-16 3.3E-20 177.1 -3.1 131 424-572 104-245 (594)
108 1m9s_A Internalin B; cell inva 99.5 9.5E-14 3.3E-18 158.0 12.7 170 487-710 39-208 (605)
109 3cvr_A Invasion plasmid antige 99.5 1.1E-13 3.6E-18 155.8 12.8 94 462-574 59-152 (571)
110 1xeu_A Internalin C; cellular 99.5 3.3E-14 1.1E-18 145.0 7.5 167 460-710 17-183 (263)
111 2o6s_A Variable lymphocyte rec 99.5 5.3E-13 1.8E-17 131.1 15.7 86 479-567 18-105 (208)
112 4ezg_A Putative uncharacterize 99.5 1E-13 3.5E-18 134.8 9.3 149 487-708 40-190 (197)
113 2v9t_B SLIT homolog 2 protein 99.5 1.9E-13 6.5E-18 135.3 11.2 99 465-572 14-114 (220)
114 3cvr_A Invasion plasmid antige 99.4 3.6E-13 1.2E-17 151.4 12.7 74 491-574 59-132 (571)
115 2v1u_A Cell division control p 99.4 2.5E-12 8.4E-17 139.8 18.3 295 77-393 18-352 (387)
116 1fnn_A CDC6P, cell division co 99.4 4.8E-12 1.6E-16 137.6 20.6 298 78-394 17-353 (389)
117 2o6s_A Variable lymphocyte rec 99.4 1.3E-12 4.5E-17 128.2 14.3 147 494-709 10-158 (208)
118 3e6j_A Variable lymphocyte rec 99.4 4.9E-13 1.7E-17 133.3 11.3 90 479-571 30-121 (229)
119 1dce_A Protein (RAB geranylger 99.4 9.2E-16 3.1E-20 173.6 -9.7 61 488-549 346-420 (567)
120 2v70_A SLIT-2, SLIT homolog 2 99.4 3.8E-13 1.3E-17 133.1 9.7 98 465-571 14-114 (220)
121 1dce_A Protein (RAB geranylger 99.4 1.6E-15 5.4E-20 171.7 -9.7 204 511-798 345-567 (567)
122 2v9t_B SLIT homolog 2 protein 99.4 9.4E-13 3.2E-17 130.2 11.3 148 494-710 14-163 (220)
123 2xot_A Amphoterin-induced prot 99.4 3.7E-13 1.3E-17 144.4 8.7 101 465-574 21-124 (361)
124 2v70_A SLIT-2, SLIT homolog 2 99.4 1.2E-12 4E-17 129.6 11.3 148 494-710 14-164 (220)
125 3e6j_A Variable lymphocyte rec 99.4 1.8E-12 6.1E-17 129.2 12.0 147 493-709 21-169 (229)
126 1xeu_A Internalin C; cellular 99.4 1E-12 3.5E-17 133.8 10.1 152 457-691 36-187 (263)
127 1njg_A DNA polymerase III subu 99.4 1E-11 3.4E-16 125.5 16.4 197 78-290 23-230 (250)
128 2qby_B CDC6 homolog 3, cell di 99.4 7.7E-12 2.6E-16 135.6 16.2 294 77-393 19-340 (384)
129 4b8c_D Glucose-repressible alc 99.3 2.9E-13 9.9E-18 158.2 0.8 114 453-574 215-328 (727)
130 2qby_A CDC6 homolog 1, cell di 99.3 2E-11 6.8E-16 132.5 14.4 295 77-392 19-348 (386)
131 2ell_A Acidic leucine-rich nuc 99.3 4.8E-12 1.7E-16 119.4 7.9 106 459-572 21-130 (168)
132 4b8c_D Glucose-repressible alc 99.3 2.1E-12 7.2E-17 150.9 6.4 93 480-574 213-305 (727)
133 2xot_A Amphoterin-induced prot 99.3 4.2E-12 1.4E-16 136.1 8.2 158 462-689 39-202 (361)
134 2ell_A Acidic leucine-rich nuc 99.3 6.2E-12 2.1E-16 118.7 8.3 133 422-574 21-159 (168)
135 2chg_A Replication factor C sm 99.3 7.3E-11 2.5E-15 117.2 16.5 186 78-288 17-204 (226)
136 2je0_A Acidic leucine-rich nuc 99.2 6.2E-12 2.1E-16 116.0 5.9 108 455-569 35-147 (149)
137 1w8a_A SLIT protein; signaling 99.2 2.9E-11 1E-15 116.7 10.8 41 651-691 101-141 (192)
138 2wfh_A SLIT homolog 2 protein 99.2 9E-11 3.1E-15 113.2 12.2 39 651-689 101-139 (193)
139 3sb4_A Hypothetical leucine ri 99.2 2.2E-10 7.4E-15 121.1 14.9 96 461-567 48-153 (329)
140 2je0_A Acidic leucine-rich nuc 99.2 2.6E-11 8.8E-16 111.8 6.4 108 459-574 14-125 (149)
141 1ds9_A Outer arm dynein; leuci 99.1 3.6E-13 1.2E-17 131.1 -7.3 109 458-570 14-123 (198)
142 2wfh_A SLIT homolog 2 protein 99.1 8.7E-11 3E-15 113.3 9.6 107 462-574 31-138 (193)
143 1a9n_A U2A', U2A'; complex (nu 99.1 7.2E-11 2.5E-15 112.2 8.5 128 424-574 18-152 (176)
144 1hqc_A RUVB; extended AAA-ATPa 99.1 4E-10 1.4E-14 118.8 13.7 267 78-391 12-324 (324)
145 1w8a_A SLIT protein; signaling 99.1 1.4E-10 4.6E-15 111.9 8.1 106 463-574 30-138 (192)
146 1sxj_B Activator 1 37 kDa subu 99.1 4.1E-10 1.4E-14 118.7 12.3 186 78-288 21-210 (323)
147 2o6r_A Variable lymphocyte rec 99.0 3.9E-10 1.3E-14 107.3 8.8 41 650-690 98-138 (177)
148 1a9n_A U2A', U2A'; complex (nu 99.0 2.3E-10 7.9E-15 108.7 6.8 108 457-574 14-125 (176)
149 2r9u_A Variable lymphocyte rec 99.0 7.4E-10 2.5E-14 104.7 9.3 101 465-574 15-117 (174)
150 3g39_A Variable lymphocyte rec 99.0 8E-10 2.7E-14 104.1 9.3 103 464-574 11-114 (170)
151 3sb4_A Hypothetical leucine ri 99.0 2.3E-10 7.8E-15 120.9 6.0 290 460-797 23-327 (329)
152 1iqp_A RFCS; clamp loader, ext 98.9 4.6E-09 1.6E-13 110.8 13.6 183 78-288 25-212 (327)
153 2o6r_A Variable lymphocyte rec 98.9 2.4E-09 8.1E-14 101.7 10.0 106 462-574 28-136 (177)
154 1ds9_A Outer arm dynein; leuci 98.9 5E-11 1.7E-15 115.8 -3.2 111 454-574 40-152 (198)
155 4fdw_A Leucine rich hypothetic 98.9 9.1E-08 3.1E-12 103.2 20.8 272 460-815 111-392 (401)
156 1jr3_A DNA polymerase III subu 98.9 2.5E-08 8.5E-13 107.4 15.4 195 78-288 16-221 (373)
157 2chq_A Replication factor C sm 98.8 2.9E-08 9.9E-13 104.3 12.4 181 78-287 17-203 (319)
158 3te6_A Regulatory protein SIR3 98.8 2.9E-08 9.8E-13 101.8 11.7 172 78-255 20-212 (318)
159 2r9u_A Variable lymphocyte rec 98.8 1.6E-08 5.4E-13 95.4 8.9 91 462-560 33-126 (174)
160 3g39_A Variable lymphocyte rec 98.7 3.3E-08 1.1E-12 92.9 9.2 88 462-556 30-119 (170)
161 2ifg_A High affinity nerve gro 98.7 2.7E-08 9.1E-13 105.9 9.1 94 479-574 20-115 (347)
162 4fdw_A Leucine rich hypothetic 98.7 6.2E-07 2.1E-11 96.6 18.9 241 454-776 128-379 (401)
163 3bos_A Putative DNA replicatio 98.7 5.1E-08 1.7E-12 97.7 9.3 174 78-288 28-217 (242)
164 3pfi_A Holliday junction ATP-d 98.6 1.2E-06 4.3E-11 92.4 18.7 178 77-287 28-226 (338)
165 1jbk_A CLPB protein; beta barr 98.6 1.4E-07 4.8E-12 90.7 9.2 46 78-129 22-67 (195)
166 1sxj_D Activator 1 41 kDa subu 98.6 3.2E-07 1.1E-11 97.8 12.6 194 78-287 37-234 (353)
167 2ifg_A High affinity nerve gro 98.5 2E-07 6.8E-12 99.1 8.7 93 454-554 24-118 (347)
168 3uk6_A RUVB-like 2; hexameric 98.5 1.5E-06 5.1E-11 93.1 15.3 196 77-287 43-302 (368)
169 3un9_A NLR family member X1; l 98.4 1.6E-08 5.3E-13 108.1 -2.0 90 462-552 72-168 (372)
170 3h4m_A Proteasome-activating n 98.4 3.2E-06 1.1E-10 86.9 15.5 185 77-286 16-229 (285)
171 2z4s_A Chromosomal replication 98.4 1.4E-06 4.7E-11 95.0 13.2 181 105-306 130-331 (440)
172 2qz4_A Paraplegin; AAA+, SPG7, 98.4 6.8E-06 2.3E-10 83.2 17.0 183 77-282 5-215 (262)
173 1sxj_E Activator 1 40 kDa subu 98.4 1.7E-06 5.9E-11 92.1 12.9 195 78-287 14-236 (354)
174 3pvs_A Replication-associated 98.4 3.3E-06 1.1E-10 91.7 15.1 177 78-286 26-213 (447)
175 3un9_A NLR family member X1; l 98.4 1.8E-08 6.3E-13 107.5 -2.8 166 490-689 71-252 (372)
176 3u61_B DNA polymerase accessor 98.4 2.1E-06 7.3E-11 90.0 12.8 177 78-284 26-212 (324)
177 1sxj_A Activator 1 95 kDa subu 98.4 1.6E-06 5.6E-11 96.8 12.4 195 78-288 39-253 (516)
178 2p65_A Hypothetical protein PF 98.3 1.9E-06 6.4E-11 82.2 10.6 46 78-129 22-67 (187)
179 3syl_A Protein CBBX; photosynt 98.3 4.2E-06 1.4E-10 87.1 13.9 162 79-256 32-219 (309)
180 1l8q_A Chromosomal replication 98.3 6E-06 2E-10 86.5 15.0 170 86-283 22-203 (324)
181 1a5t_A Delta prime, HOLB; zinc 98.3 1.4E-05 4.9E-10 83.8 17.6 172 84-288 8-205 (334)
182 4fs7_A Uncharacterized protein 98.3 1.6E-05 5.4E-10 85.9 18.2 127 648-801 249-376 (394)
183 3n70_A Transport activator; si 98.3 1.1E-06 3.8E-11 79.8 7.2 114 79-223 2-115 (145)
184 1sxj_C Activator 1 40 kDa subu 98.3 8.5E-06 2.9E-10 86.0 14.7 178 78-284 25-208 (340)
185 2ra8_A Uncharacterized protein 98.3 1.2E-07 4.1E-12 100.2 0.2 144 647-802 167-318 (362)
186 1d2n_A N-ethylmaleimide-sensit 98.2 1.2E-05 4.1E-10 81.8 14.9 172 78-280 33-229 (272)
187 3eie_A Vacuolar protein sortin 98.2 2.1E-05 7.2E-10 82.1 16.2 188 77-288 17-228 (322)
188 4fs7_A Uncharacterized protein 98.2 1.4E-05 4.8E-10 86.2 15.3 121 647-796 271-393 (394)
189 2ra8_A Uncharacterized protein 98.2 8.2E-07 2.8E-11 93.8 5.2 90 455-547 132-227 (362)
190 3d8b_A Fidgetin-like protein 1 98.2 1.8E-05 6.1E-10 83.9 14.8 188 78-289 84-296 (357)
191 1xwi_A SKD1 protein; VPS4B, AA 98.2 7.6E-05 2.6E-09 77.6 18.7 190 77-289 11-224 (322)
192 2qp9_X Vacuolar protein sortin 98.1 2.1E-05 7.3E-10 83.1 14.2 185 78-288 51-261 (355)
193 3b9p_A CG5977-PA, isoform A; A 98.1 9.9E-05 3.4E-09 76.1 18.7 185 78-288 21-233 (297)
194 3vfd_A Spastin; ATPase, microt 98.1 7.5E-05 2.5E-09 80.2 17.5 188 77-288 114-326 (389)
195 3ec2_A DNA replication protein 98.1 9.1E-06 3.1E-10 76.9 8.6 121 83-223 19-142 (180)
196 3e4g_A ATP synthase subunit S, 98.0 1.2E-06 4.1E-11 80.9 2.1 36 677-712 62-98 (176)
197 2zan_A Vacuolar protein sortin 98.0 0.00012 4.1E-09 79.8 17.6 189 77-288 133-345 (444)
198 3cf0_A Transitional endoplasmi 98.0 7.2E-05 2.5E-09 77.1 14.9 181 78-283 15-223 (301)
199 3co5_A Putative two-component 98.0 4.7E-06 1.6E-10 75.4 5.2 110 79-223 5-115 (143)
200 1io0_A Tropomodulin; LRR prote 98.0 1.6E-06 5.4E-11 82.5 2.0 121 452-574 26-163 (185)
201 2gno_A DNA polymerase III, gam 98.0 4E-05 1.4E-09 78.7 12.0 149 82-254 1-152 (305)
202 1in4_A RUVB, holliday junction 97.9 0.00088 3E-08 70.0 21.9 176 78-286 25-221 (334)
203 2w58_A DNAI, primosome compone 97.9 7.4E-06 2.5E-10 79.2 4.4 119 85-223 36-158 (202)
204 3rw6_A Nuclear RNA export fact 97.9 1.4E-05 4.7E-10 79.8 6.2 83 458-545 166-257 (267)
205 1qvr_A CLPB protein; coiled co 97.8 2.7E-05 9.3E-10 92.5 9.5 154 78-253 170-344 (854)
206 2bjv_A PSP operon transcriptio 97.8 4.8E-05 1.6E-09 77.0 9.0 133 78-223 6-150 (265)
207 4b4t_K 26S protease regulatory 97.8 0.00054 1.8E-08 73.1 17.3 179 78-281 172-379 (428)
208 4gt6_A Cell surface protein; l 97.8 0.00062 2.1E-08 73.2 18.2 87 455-547 80-168 (394)
209 2c9o_A RUVB-like 1; hexameric 97.8 0.0001 3.4E-09 80.9 12.0 97 186-287 297-409 (456)
210 3e4g_A ATP synthase subunit S, 97.8 4.1E-06 1.4E-10 77.4 0.6 89 651-752 60-154 (176)
211 3pxg_A Negative regulator of g 97.8 5.6E-05 1.9E-09 83.1 9.5 147 78-254 180-338 (468)
212 4fcw_A Chaperone protein CLPB; 97.8 7.4E-05 2.5E-09 77.7 10.0 136 79-223 18-169 (311)
213 1ojl_A Transcriptional regulat 97.8 6.6E-05 2.3E-09 77.3 9.4 160 78-251 2-187 (304)
214 3hu3_A Transitional endoplasmi 97.7 0.00015 5.2E-09 79.5 12.6 185 78-287 204-414 (489)
215 1ofh_A ATP-dependent HSL prote 97.7 0.00026 8.7E-09 73.5 13.9 52 78-129 15-74 (310)
216 4b4t_J 26S protease regulatory 97.7 0.00063 2.1E-08 71.5 16.6 180 78-282 148-355 (405)
217 2kjq_A DNAA-related protein; s 97.7 2.9E-05 9.9E-10 70.5 5.7 86 106-223 37-124 (149)
218 1io0_A Tropomodulin; LRR prote 97.7 1.2E-05 4E-10 76.4 2.6 118 424-552 35-164 (185)
219 4b4t_L 26S protease subunit RP 97.6 0.0011 3.8E-08 70.8 16.4 180 78-282 181-388 (437)
220 1lv7_A FTSH; alpha/beta domain 97.6 0.0007 2.4E-08 67.9 13.5 184 77-285 11-222 (257)
221 4b4t_H 26S protease regulatory 97.5 0.0017 5.8E-08 69.2 16.3 179 78-281 209-415 (467)
222 2ce7_A Cell division protein F 97.5 0.00089 3E-08 72.8 14.5 179 78-281 16-221 (476)
223 3rw6_A Nuclear RNA export fact 97.5 7E-05 2.4E-09 74.7 5.4 81 488-570 167-259 (267)
224 1r6b_X CLPA protein; AAA+, N-t 97.5 0.00082 2.8E-08 79.0 15.3 156 78-254 186-362 (758)
225 3pxi_A Negative regulator of g 97.5 0.00013 4.6E-09 85.5 7.9 155 78-253 491-674 (758)
226 3pxi_A Negative regulator of g 97.4 0.00027 9.3E-09 82.9 9.6 147 78-254 180-338 (758)
227 4b4t_I 26S protease regulatory 97.4 0.0013 4.5E-08 69.2 13.2 179 78-281 182-388 (437)
228 4b4t_M 26S protease regulatory 97.4 0.00078 2.7E-08 71.9 11.4 179 78-281 181-387 (434)
229 4gt6_A Cell surface protein; l 97.4 0.0013 4.3E-08 70.8 13.3 278 455-800 107-387 (394)
230 3t15_A Ribulose bisphosphate c 97.3 0.002 6.9E-08 65.8 13.6 27 103-129 34-60 (293)
231 2r44_A Uncharacterized protein 97.3 0.00042 1.4E-08 72.6 8.5 151 78-255 27-199 (331)
232 1r6b_X CLPA protein; AAA+, N-t 97.2 0.00044 1.5E-08 81.4 8.3 133 78-223 458-607 (758)
233 2cvh_A DNA repair and recombin 97.2 0.0013 4.3E-08 64.2 9.7 85 105-195 20-116 (220)
234 4h09_A Hypothetical leucine ri 97.2 0.007 2.4E-07 64.5 16.3 56 649-707 237-294 (379)
235 2r62_A Cell division protease 97.1 9.5E-05 3.2E-09 74.9 1.3 53 77-129 10-68 (268)
236 1qvr_A CLPB protein; coiled co 97.1 0.00083 2.8E-08 79.8 9.0 135 79-223 559-710 (854)
237 3m6a_A ATP-dependent protease 97.1 0.00056 1.9E-08 76.4 7.0 162 78-254 81-266 (543)
238 1jr3_D DNA polymerase III, del 97.1 0.0088 3E-07 62.7 15.8 157 104-286 17-183 (343)
239 2qgz_A Helicase loader, putati 97.1 0.00022 7.5E-09 73.5 3.0 56 84-143 134-189 (308)
240 3cf2_A TER ATPase, transitiona 97.0 0.0046 1.6E-07 71.2 13.9 180 78-282 204-408 (806)
241 3nbx_X ATPase RAVA; AAA+ ATPas 97.0 0.0018 6.2E-08 70.9 10.1 43 79-129 23-65 (500)
242 1g5t_A COB(I)alamin adenosyltr 97.0 0.0021 7.1E-08 60.2 8.9 116 107-224 30-163 (196)
243 2vhj_A Ntpase P4, P4; non- hyd 97.0 0.00028 9.7E-09 71.4 3.2 67 106-194 124-192 (331)
244 1ixz_A ATP-dependent metallopr 97.0 0.0093 3.2E-07 59.4 14.2 179 78-281 16-221 (254)
245 4h09_A Hypothetical leucine ri 96.9 0.009 3.1E-07 63.7 14.2 126 648-799 213-341 (379)
246 2x8a_A Nuclear valosin-contain 96.9 0.014 4.6E-07 58.9 14.6 156 78-254 10-191 (274)
247 2b8t_A Thymidine kinase; deoxy 96.8 0.00071 2.4E-08 65.4 4.2 112 105-224 12-126 (223)
248 1um8_A ATP-dependent CLP prote 96.8 0.0077 2.6E-07 64.1 12.5 51 78-128 21-95 (376)
249 2dhr_A FTSH; AAA+ protein, hex 96.8 0.0055 1.9E-07 67.0 11.1 177 76-281 29-236 (499)
250 1g8p_A Magnesium-chelatase 38 96.7 0.0097 3.3E-07 62.6 12.1 46 78-129 24-69 (350)
251 1ye8_A Protein THEP1, hypothet 96.6 0.02 7E-07 53.2 12.5 23 107-129 2-24 (178)
252 3hr8_A Protein RECA; alpha and 96.6 0.005 1.7E-07 64.0 9.0 84 104-194 60-149 (356)
253 1iy2_A ATP-dependent metallopr 96.6 0.011 3.8E-07 59.8 11.6 181 76-281 38-245 (278)
254 2z43_A DNA repair and recombin 96.6 0.0086 2.9E-07 62.1 10.6 88 105-193 107-212 (324)
255 1n0w_A DNA repair protein RAD5 96.6 0.0072 2.5E-07 59.8 9.6 89 105-194 24-129 (243)
256 1ypw_A Transitional endoplasmi 96.6 0.0037 1.2E-07 73.3 8.4 158 77-254 203-385 (806)
257 2w0m_A SSO2452; RECA, SSPF, un 96.5 0.0063 2.2E-07 59.7 8.9 114 106-224 24-168 (235)
258 3io5_A Recombination and repai 96.5 0.0076 2.6E-07 60.7 9.2 83 107-194 30-121 (333)
259 2i1q_A DNA repair and recombin 96.3 0.0097 3.3E-07 61.7 9.1 89 104-193 97-213 (322)
260 1v5w_A DMC1, meiotic recombina 96.3 0.013 4.5E-07 61.2 10.1 57 104-161 121-181 (343)
261 1u94_A RECA protein, recombina 96.3 0.0093 3.2E-07 62.3 8.6 84 104-194 62-151 (356)
262 2zr9_A Protein RECA, recombina 96.2 0.012 3.9E-07 61.5 9.1 84 104-194 60-149 (349)
263 1xp8_A RECA protein, recombina 96.2 0.013 4.4E-07 61.4 9.2 84 104-194 73-162 (366)
264 3ice_A Transcription terminati 96.1 0.0056 1.9E-07 63.3 5.4 52 89-146 163-215 (422)
265 4eun_A Thermoresistant glucoki 95.9 0.04 1.4E-06 52.5 10.8 25 104-128 28-52 (200)
266 2px0_A Flagellar biosynthesis 95.8 0.019 6.7E-07 58.3 8.1 87 104-193 104-191 (296)
267 3lda_A DNA repair protein RAD5 95.8 0.036 1.2E-06 58.7 10.4 88 105-193 178-282 (400)
268 2pze_A Cystic fibrosis transme 95.7 0.17 5.8E-06 49.2 14.4 23 106-128 35-57 (229)
269 1rz3_A Hypothetical protein rb 95.7 0.0099 3.4E-07 56.8 5.5 44 82-128 2-45 (201)
270 2p5t_B PEZT; postsegregational 95.7 0.025 8.6E-07 56.2 8.6 41 87-128 15-55 (253)
271 4a74_A DNA repair and recombin 95.7 0.048 1.6E-06 53.1 10.6 45 105-149 25-73 (231)
272 2orw_A Thymidine kinase; TMTK, 95.7 0.0019 6.4E-08 60.8 0.3 107 106-223 4-112 (184)
273 1cr0_A DNA primase/helicase; R 95.7 0.034 1.1E-06 56.8 9.6 38 106-144 36-73 (296)
274 1sky_E F1-ATPase, F1-ATP synth 95.7 0.021 7.1E-07 61.2 8.1 51 106-157 152-203 (473)
275 1gvn_B Zeta; postsegregational 95.5 0.038 1.3E-06 56.0 9.2 25 103-127 31-55 (287)
276 3tqc_A Pantothenate kinase; bi 95.5 0.036 1.2E-06 56.7 9.0 47 80-128 69-115 (321)
277 1pzn_A RAD51, DNA repair and r 95.5 0.045 1.5E-06 57.1 9.8 90 104-194 130-241 (349)
278 3t61_A Gluconokinase; PSI-biol 95.5 0.049 1.7E-06 51.9 9.4 24 105-128 18-41 (202)
279 1ukz_A Uridylate kinase; trans 95.5 0.12 4.2E-06 49.1 12.3 25 104-128 14-38 (203)
280 1vma_A Cell division protein F 95.4 0.084 2.9E-06 53.7 11.3 108 84-194 81-196 (306)
281 3bh0_A DNAB-like replicative h 95.4 0.086 3E-06 54.2 11.4 52 105-160 68-119 (315)
282 2cbz_A Multidrug resistance-as 95.4 0.096 3.3E-06 51.2 11.1 23 106-128 32-54 (237)
283 3upu_A ATP-dependent DNA helic 95.4 0.088 3E-06 57.4 12.0 121 83-225 30-166 (459)
284 3dm5_A SRP54, signal recogniti 95.3 0.1 3.6E-06 55.6 12.0 26 104-129 99-124 (443)
285 3c8u_A Fructokinase; YP_612366 95.3 0.013 4.6E-07 56.2 4.7 40 86-129 7-46 (208)
286 1qhx_A CPT, protein (chloramph 95.2 0.0086 2.9E-07 55.9 3.0 23 106-128 4-26 (178)
287 3hws_A ATP-dependent CLP prote 95.2 0.015 5.2E-07 61.4 5.3 50 79-128 16-74 (363)
288 3uie_A Adenylyl-sulfate kinase 95.2 0.053 1.8E-06 51.6 8.5 26 104-129 24-49 (200)
289 3cf2_A TER ATPase, transitiona 95.2 0.095 3.2E-06 60.5 11.9 159 76-254 475-661 (806)
290 2dr3_A UPF0273 protein PH0284; 95.1 0.051 1.7E-06 53.6 8.6 38 106-145 24-61 (247)
291 3kb2_A SPBC2 prophage-derived 95.0 0.011 3.7E-07 54.8 3.0 23 106-128 2-24 (173)
292 1knq_A Gluconate kinase; ALFA/ 95.0 0.11 3.7E-06 48.0 10.0 24 105-128 8-31 (175)
293 2pjz_A Hypothetical protein ST 95.0 0.2 6.8E-06 49.7 12.3 22 106-127 31-52 (263)
294 3lw7_A Adenylate kinase relate 94.9 0.012 4E-07 54.8 3.0 20 106-125 2-21 (179)
295 3vaa_A Shikimate kinase, SK; s 94.9 0.012 4.2E-07 56.0 3.2 24 105-128 25-48 (199)
296 1zp6_A Hypothetical protein AT 94.9 0.014 4.8E-07 55.1 3.6 24 105-128 9-32 (191)
297 1ly1_A Polynucleotide kinase; 94.8 0.013 4.5E-07 54.7 3.0 22 106-127 3-24 (181)
298 1kgd_A CASK, peripheral plasma 94.8 0.016 5.4E-07 54.2 3.4 24 105-128 5-28 (180)
299 3trf_A Shikimate kinase, SK; a 94.8 0.014 4.8E-07 54.8 3.0 24 105-128 5-28 (185)
300 3kl4_A SRP54, signal recogniti 94.8 0.2 6.9E-06 53.4 12.3 44 87-130 76-122 (433)
301 2yvu_A Probable adenylyl-sulfa 94.7 0.043 1.5E-06 51.5 6.4 26 104-129 12-37 (186)
302 1odf_A YGR205W, hypothetical 3 94.7 0.029 1E-06 56.7 5.4 27 103-129 29-55 (290)
303 3rfe_A Platelet glycoprotein I 94.7 0.047 1.6E-06 47.6 6.0 54 495-551 12-67 (130)
304 1kag_A SKI, shikimate kinase I 94.7 0.013 4.3E-07 54.4 2.5 23 106-128 5-27 (173)
305 2rhm_A Putative kinase; P-loop 94.7 0.019 6.4E-07 54.3 3.7 25 104-128 4-28 (193)
306 2bbs_A Cystic fibrosis transme 94.5 0.39 1.3E-05 48.4 13.2 23 106-128 65-87 (290)
307 2ga8_A Hypothetical 39.9 kDa p 94.5 0.028 9.7E-07 57.8 4.8 46 81-128 2-47 (359)
308 4a1f_A DNAB helicase, replicat 94.5 0.17 6E-06 52.0 10.7 51 106-160 47-97 (338)
309 3fwy_A Light-independent proto 94.4 0.018 6.3E-07 58.9 3.2 40 104-145 47-86 (314)
310 1zuh_A Shikimate kinase; alpha 94.4 0.019 6.5E-07 52.9 2.9 25 104-128 6-30 (168)
311 3tau_A Guanylate kinase, GMP k 94.4 0.023 7.7E-07 54.6 3.5 25 104-128 7-31 (208)
312 1nks_A Adenylate kinase; therm 94.4 0.02 6.8E-07 54.1 3.1 24 106-129 2-25 (194)
313 3iij_A Coilin-interacting nucl 94.4 0.018 6.3E-07 53.7 2.8 25 104-128 10-34 (180)
314 2xxa_A Signal recognition part 94.3 0.19 6.6E-06 53.8 10.9 59 85-144 77-138 (433)
315 1y63_A LMAJ004144AAA protein; 94.3 0.026 8.9E-07 53.0 3.7 25 104-128 9-33 (184)
316 1kht_A Adenylate kinase; phosp 94.3 0.021 7.1E-07 53.9 3.0 23 106-128 4-26 (192)
317 2qor_A Guanylate kinase; phosp 94.3 0.019 6.6E-07 54.9 2.8 25 104-128 11-35 (204)
318 1xjc_A MOBB protein homolog; s 94.2 0.033 1.1E-06 50.9 4.0 26 104-129 3-28 (169)
319 1fx0_B ATP synthase beta chain 94.2 0.17 5.9E-06 54.2 10.1 63 90-158 155-218 (498)
320 2c95_A Adenylate kinase 1; tra 94.2 0.027 9.1E-07 53.4 3.6 24 105-128 9-32 (196)
321 1via_A Shikimate kinase; struc 94.1 0.02 6.7E-07 53.3 2.5 22 107-128 6-27 (175)
322 3tr0_A Guanylate kinase, GMP k 94.1 0.024 8.2E-07 54.2 3.2 23 106-128 8-30 (205)
323 2j37_W Signal recognition part 94.1 0.25 8.4E-06 53.9 11.4 43 87-129 80-125 (504)
324 1uf9_A TT1252 protein; P-loop, 94.1 0.027 9.2E-07 53.7 3.5 24 104-127 7-30 (203)
325 3sr0_A Adenylate kinase; phosp 94.1 0.13 4.5E-06 48.9 8.3 87 107-208 2-97 (206)
326 2bdt_A BH3686; alpha-beta prot 94.1 0.024 8.2E-07 53.4 3.0 22 106-127 3-24 (189)
327 3a00_A Guanylate kinase, GMP k 94.1 0.02 6.8E-07 53.9 2.4 23 106-128 2-24 (186)
328 2pbr_A DTMP kinase, thymidylat 94.0 0.14 4.7E-06 48.2 8.3 22 107-128 2-23 (195)
329 2if2_A Dephospho-COA kinase; a 94.0 0.026 9E-07 53.9 3.2 22 106-127 2-23 (204)
330 3jvv_A Twitching mobility prot 94.0 0.034 1.2E-06 58.0 4.3 111 106-227 124-234 (356)
331 2qt1_A Nicotinamide riboside k 94.0 0.03 1E-06 53.7 3.6 25 104-128 20-44 (207)
332 2ze6_A Isopentenyl transferase 94.0 0.024 8.1E-07 56.3 2.9 23 106-128 2-24 (253)
333 3hjn_A DTMP kinase, thymidylat 94.0 0.18 6E-06 47.7 8.9 24 107-130 2-25 (197)
334 4akg_A Glutathione S-transfera 94.0 1 3.6E-05 59.0 18.5 232 108-388 1270-1537(2695)
335 3asz_A Uridine kinase; cytidin 94.0 0.029 1E-06 53.9 3.4 25 104-128 5-29 (211)
336 3l0o_A Transcription terminati 94.0 0.17 5.8E-06 52.3 9.0 37 88-129 163-199 (427)
337 2j41_A Guanylate kinase; GMP, 93.9 0.03 1E-06 53.6 3.4 24 105-128 6-29 (207)
338 4gp7_A Metallophosphoesterase; 93.9 0.025 8.6E-07 52.3 2.8 23 105-127 9-31 (171)
339 2ffh_A Protein (FFH); SRP54, s 93.9 0.14 4.8E-06 54.5 8.8 26 104-129 97-122 (425)
340 2jaq_A Deoxyguanosine kinase; 93.9 0.026 9E-07 53.9 3.0 23 107-129 2-24 (205)
341 1ex7_A Guanylate kinase; subst 93.9 0.022 7.6E-07 53.2 2.3 23 106-128 2-24 (186)
342 2bwj_A Adenylate kinase 5; pho 93.9 0.03 1E-06 53.2 3.3 23 106-128 13-35 (199)
343 3vr4_D V-type sodium ATPase su 93.9 0.066 2.3E-06 56.7 6.1 85 107-193 153-257 (465)
344 2iyv_A Shikimate kinase, SK; t 93.9 0.022 7.4E-07 53.5 2.2 22 107-128 4-25 (184)
345 3e1s_A Exodeoxyribonuclease V, 93.9 0.19 6.6E-06 56.1 10.3 105 106-223 205-315 (574)
346 1j8m_F SRP54, signal recogniti 93.9 0.21 7E-06 50.7 9.6 38 105-144 98-135 (297)
347 1tev_A UMP-CMP kinase; ploop, 93.9 0.027 9.4E-07 53.2 3.0 24 105-128 3-26 (196)
348 3ney_A 55 kDa erythrocyte memb 93.9 0.031 1.1E-06 52.6 3.2 25 104-128 18-42 (197)
349 2cdn_A Adenylate kinase; phosp 93.8 0.036 1.2E-06 52.8 3.7 25 104-128 19-43 (201)
350 1e6c_A Shikimate kinase; phosp 93.7 0.025 8.7E-07 52.3 2.4 23 106-128 3-25 (173)
351 3e70_C DPA, signal recognition 93.7 0.18 6E-06 51.9 8.9 27 103-129 127-153 (328)
352 2hf9_A Probable hydrogenase ni 93.7 0.05 1.7E-06 52.8 4.6 39 84-128 23-61 (226)
353 1lvg_A Guanylate kinase, GMP k 93.7 0.027 9.3E-07 53.5 2.6 22 106-127 5-26 (198)
354 3gqb_B V-type ATP synthase bet 93.7 0.068 2.3E-06 56.7 5.8 88 106-193 148-260 (464)
355 1jjv_A Dephospho-COA kinase; P 93.7 0.032 1.1E-06 53.4 3.1 22 106-127 3-24 (206)
356 1qf9_A UMP/CMP kinase, protein 93.7 0.04 1.4E-06 52.0 3.8 24 105-128 6-29 (194)
357 3zvl_A Bifunctional polynucleo 93.7 0.15 5E-06 54.7 8.5 25 104-128 257-281 (416)
358 2bbw_A Adenylate kinase 4, AK4 93.7 0.034 1.2E-06 54.9 3.3 23 105-127 27-49 (246)
359 2vli_A Antibiotic resistance p 93.6 0.025 8.6E-07 52.9 2.2 24 105-128 5-28 (183)
360 1rj9_A FTSY, signal recognitio 93.6 0.041 1.4E-06 56.0 3.9 26 104-129 101-126 (304)
361 3umf_A Adenylate kinase; rossm 93.6 0.041 1.4E-06 52.8 3.7 26 103-128 27-52 (217)
362 3a4m_A L-seryl-tRNA(SEC) kinas 93.6 0.033 1.1E-06 55.6 3.1 24 105-128 4-27 (260)
363 3cmu_A Protein RECA, recombina 93.6 0.095 3.3E-06 66.1 7.7 83 104-193 1426-1514(2050)
364 1cke_A CK, MSSA, protein (cyti 93.6 0.033 1.1E-06 54.3 2.9 22 106-127 6-27 (227)
365 3cm0_A Adenylate kinase; ATP-b 93.5 0.034 1.2E-06 52.2 3.0 23 106-128 5-27 (186)
366 1zu4_A FTSY; GTPase, signal re 93.5 0.15 5.2E-06 52.2 8.0 27 103-129 103-129 (320)
367 1uj2_A Uridine-cytidine kinase 93.5 0.035 1.2E-06 55.1 3.1 25 104-128 21-45 (252)
368 1znw_A Guanylate kinase, GMP k 93.5 0.037 1.3E-06 53.0 3.2 24 105-128 20-43 (207)
369 1nn5_A Similar to deoxythymidy 93.5 0.042 1.4E-06 52.9 3.6 25 105-129 9-33 (215)
370 2pt5_A Shikimate kinase, SK; a 93.5 0.035 1.2E-06 51.0 2.9 22 107-128 2-23 (168)
371 1g41_A Heat shock protein HSLU 93.5 0.069 2.4E-06 57.1 5.4 51 78-128 15-73 (444)
372 1ls1_A Signal recognition part 93.4 0.17 5.7E-06 51.3 8.1 26 104-129 97-122 (295)
373 2wwf_A Thymidilate kinase, put 93.4 0.046 1.6E-06 52.5 3.7 26 104-129 9-34 (212)
374 1aky_A Adenylate kinase; ATP:A 93.4 0.039 1.3E-06 53.4 3.2 24 105-128 4-27 (220)
375 2plr_A DTMP kinase, probable t 93.4 0.038 1.3E-06 53.1 3.1 24 106-129 5-28 (213)
376 2ck3_D ATP synthase subunit be 93.4 0.15 5.3E-06 54.3 7.9 65 89-159 142-207 (482)
377 2grj_A Dephospho-COA kinase; T 93.4 0.038 1.3E-06 52.0 3.0 24 104-127 11-34 (192)
378 2pez_A Bifunctional 3'-phospho 93.4 0.04 1.4E-06 51.3 3.1 24 105-128 5-28 (179)
379 1zd8_A GTP:AMP phosphotransfer 93.3 0.043 1.5E-06 53.4 3.3 24 105-128 7-30 (227)
380 1pgv_A TMD-1, tropomodulin TMD 93.3 0.054 1.9E-06 50.8 3.8 92 455-548 34-135 (197)
381 1htw_A HI0065; nucleotide-bind 93.3 0.044 1.5E-06 49.7 3.1 23 106-128 34-56 (158)
382 3end_A Light-independent proto 93.3 0.068 2.3E-06 54.8 5.0 43 103-147 39-81 (307)
383 2wsm_A Hydrogenase expression/ 93.2 0.054 1.9E-06 52.4 3.9 41 82-128 13-53 (221)
384 3aez_A Pantothenate kinase; tr 93.2 0.044 1.5E-06 56.1 3.4 25 104-128 89-113 (312)
385 2yhs_A FTSY, cell division pro 93.2 0.24 8.3E-06 53.3 9.2 42 104-148 292-333 (503)
386 1z6g_A Guanylate kinase; struc 93.2 0.036 1.2E-06 53.6 2.6 23 106-128 24-46 (218)
387 2f6r_A COA synthase, bifunctio 93.1 0.052 1.8E-06 54.8 3.7 24 104-127 74-97 (281)
388 3b9q_A Chloroplast SRP recepto 93.1 0.092 3.1E-06 53.4 5.5 26 104-129 99-124 (302)
389 2ged_A SR-beta, signal recogni 93.1 0.08 2.7E-06 49.8 4.8 25 104-128 47-71 (193)
390 3tlx_A Adenylate kinase 2; str 93.1 0.057 1.9E-06 53.2 3.8 25 104-128 28-52 (243)
391 2z0h_A DTMP kinase, thymidylat 93.1 0.1 3.4E-06 49.3 5.5 23 107-129 2-24 (197)
392 1s96_A Guanylate kinase, GMP k 93.1 0.048 1.6E-06 52.6 3.2 25 104-128 15-39 (219)
393 2r9v_A ATP synthase subunit al 93.0 0.15 5.2E-06 54.7 7.2 84 106-193 176-276 (515)
394 4e22_A Cytidylate kinase; P-lo 93.0 0.052 1.8E-06 53.8 3.5 23 105-127 27-49 (252)
395 2c61_A A-type ATP synthase non 93.0 0.12 4E-06 55.3 6.2 88 106-193 153-258 (469)
396 3be4_A Adenylate kinase; malar 93.0 0.047 1.6E-06 52.7 3.0 23 106-128 6-28 (217)
397 1zak_A Adenylate kinase; ATP:A 93.0 0.047 1.6E-06 53.0 3.0 24 105-128 5-28 (222)
398 1gtv_A TMK, thymidylate kinase 93.0 0.03 1E-06 53.9 1.6 23 107-129 2-24 (214)
399 2jeo_A Uridine-cytidine kinase 93.0 0.052 1.8E-06 53.6 3.4 24 105-128 25-48 (245)
400 3p32_A Probable GTPase RV1496/ 92.9 0.12 4.2E-06 54.0 6.4 38 87-128 65-102 (355)
401 2fz4_A DNA repair protein RAD2 92.9 0.63 2.2E-05 45.3 11.1 101 108-222 111-227 (237)
402 2v54_A DTMP kinase, thymidylat 92.9 0.056 1.9E-06 51.5 3.4 24 105-128 4-27 (204)
403 3k1j_A LON protease, ATP-depen 92.8 0.077 2.6E-06 60.1 4.9 44 78-129 41-84 (604)
404 2f1r_A Molybdopterin-guanine d 92.8 0.036 1.2E-06 51.0 1.8 24 106-129 3-26 (171)
405 2i3b_A HCR-ntpase, human cance 92.8 0.045 1.5E-06 51.4 2.5 23 107-129 3-25 (189)
406 3nwj_A ATSK2; P loop, shikimat 92.8 0.044 1.5E-06 54.0 2.5 23 106-128 49-71 (250)
407 1np6_A Molybdopterin-guanine d 92.8 0.06 2.1E-06 49.7 3.2 25 104-128 5-29 (174)
408 3bgw_A DNAB-like replicative h 92.8 0.35 1.2E-05 52.1 9.8 51 105-159 197-247 (444)
409 1tue_A Replication protein E1; 92.7 0.078 2.7E-06 49.7 3.9 40 85-129 43-82 (212)
410 1sq5_A Pantothenate kinase; P- 92.7 0.12 4.1E-06 52.9 5.8 24 104-127 79-102 (308)
411 1q57_A DNA primase/helicase; d 92.7 0.44 1.5E-05 52.5 10.7 52 105-159 242-293 (503)
412 2og2_A Putative signal recogni 92.6 0.12 4.1E-06 53.7 5.7 26 104-129 156-181 (359)
413 3cmu_A Protein RECA, recombina 92.6 0.18 6E-06 63.7 8.0 84 104-194 382-471 (2050)
414 3cmw_A Protein RECA, recombina 92.6 0.19 6.5E-06 62.6 8.3 85 104-195 382-472 (1706)
415 3fb4_A Adenylate kinase; psych 92.6 0.055 1.9E-06 52.2 3.0 22 107-128 2-23 (216)
416 1m7g_A Adenylylsulfate kinase; 92.6 0.061 2.1E-06 51.7 3.2 25 105-129 25-49 (211)
417 2qe7_A ATP synthase subunit al 92.6 0.18 6.2E-06 54.1 7.0 82 106-193 163-263 (502)
418 2onk_A Molybdate/tungstate ABC 92.5 0.068 2.3E-06 52.3 3.4 22 106-127 25-46 (240)
419 3dl0_A Adenylate kinase; phosp 92.5 0.059 2E-06 52.0 3.0 21 107-127 2-22 (216)
420 1vht_A Dephospho-COA kinase; s 92.5 0.065 2.2E-06 51.7 3.2 23 105-127 4-26 (218)
421 2ehv_A Hypothetical protein PH 92.4 0.062 2.1E-06 53.1 3.1 23 105-127 30-52 (251)
422 3a8t_A Adenylate isopentenyltr 92.4 0.068 2.3E-06 54.6 3.4 25 104-128 39-63 (339)
423 2pcj_A ABC transporter, lipopr 92.4 0.067 2.3E-06 51.8 3.2 22 106-127 31-52 (224)
424 3d3q_A TRNA delta(2)-isopenten 92.4 0.059 2E-06 55.3 2.9 23 106-128 8-30 (340)
425 3lnc_A Guanylate kinase, GMP k 92.4 0.046 1.6E-06 53.4 2.0 22 106-127 28-50 (231)
426 2r6a_A DNAB helicase, replicat 92.3 0.81 2.8E-05 49.6 12.1 50 105-157 203-252 (454)
427 2q6t_A DNAB replication FORK h 92.2 0.69 2.4E-05 50.0 11.4 52 105-159 200-251 (444)
428 3ake_A Cytidylate kinase; CMP 92.2 0.067 2.3E-06 51.1 3.0 22 107-128 4-25 (208)
429 2v3c_C SRP54, signal recogniti 92.2 0.11 3.6E-06 55.8 4.7 44 86-129 77-123 (432)
430 1cp2_A CP2, nitrogenase iron p 92.1 0.13 4.4E-06 51.5 5.1 39 106-146 2-40 (269)
431 3v9p_A DTMP kinase, thymidylat 92.1 0.29 9.8E-06 47.3 7.3 25 105-129 25-49 (227)
432 3b85_A Phosphate starvation-in 92.1 0.063 2.2E-06 51.3 2.6 23 106-128 23-45 (208)
433 3tif_A Uncharacterized ABC tra 92.1 0.071 2.4E-06 52.1 3.0 22 106-127 32-53 (235)
434 3oaa_A ATP synthase subunit al 92.1 0.27 9.1E-06 52.7 7.5 82 106-193 163-263 (513)
435 1a7j_A Phosphoribulokinase; tr 92.1 0.048 1.6E-06 55.2 1.8 25 104-128 4-28 (290)
436 3r20_A Cytidylate kinase; stru 92.0 0.073 2.5E-06 51.6 2.9 24 105-128 9-32 (233)
437 1yrb_A ATP(GTP)binding protein 92.0 0.084 2.9E-06 52.6 3.5 27 103-129 12-38 (262)
438 1xx6_A Thymidine kinase; NESG, 92.0 0.065 2.2E-06 50.3 2.5 109 105-224 8-118 (191)
439 1e4v_A Adenylate kinase; trans 91.9 0.08 2.7E-06 50.9 3.2 22 107-128 2-23 (214)
440 1fx0_A ATP synthase alpha chai 91.9 0.18 6E-06 54.3 6.0 82 106-193 164-264 (507)
441 2r8r_A Sensor protein; KDPD, P 91.9 0.16 5.6E-06 48.5 5.2 104 107-224 8-127 (228)
442 3exa_A TRNA delta(2)-isopenten 91.9 0.078 2.7E-06 53.4 3.1 23 106-128 4-26 (322)
443 3crm_A TRNA delta(2)-isopenten 91.9 0.073 2.5E-06 54.2 2.9 23 106-128 6-28 (323)
444 1tf7_A KAIC; homohexamer, hexa 91.9 0.13 4.3E-06 57.2 5.1 84 105-193 281-380 (525)
445 3rfe_A Platelet glycoprotein I 91.9 0.24 8.3E-06 43.0 5.9 47 479-528 19-68 (130)
446 2xb4_A Adenylate kinase; ATP-b 91.8 0.08 2.7E-06 51.3 3.0 22 107-128 2-23 (223)
447 1ak2_A Adenylate kinase isoenz 91.8 0.09 3.1E-06 51.4 3.4 24 105-128 16-39 (233)
448 3mfy_A V-type ATP synthase alp 91.8 0.19 6.6E-06 54.4 6.0 59 89-156 216-275 (588)
449 3foz_A TRNA delta(2)-isopenten 91.7 0.094 3.2E-06 52.7 3.4 25 104-128 9-33 (316)
450 1oix_A RAS-related protein RAB 91.7 0.09 3.1E-06 49.5 3.2 24 105-128 29-52 (191)
451 3vr4_A V-type sodium ATPase ca 91.7 0.24 8.4E-06 53.8 6.8 58 89-155 221-279 (600)
452 1b0u_A Histidine permease; ABC 91.6 0.084 2.9E-06 52.5 3.0 22 106-127 33-54 (262)
453 3gfo_A Cobalt import ATP-bindi 91.6 0.084 2.9E-06 52.8 3.0 22 106-127 35-56 (275)
454 2afh_E Nitrogenase iron protei 91.6 0.14 4.8E-06 51.9 4.7 39 106-146 3-41 (289)
455 2vp4_A Deoxynucleoside kinase; 91.6 0.097 3.3E-06 51.0 3.3 24 104-127 19-42 (230)
456 1sgw_A Putative ABC transporte 91.5 0.075 2.6E-06 50.9 2.4 23 106-128 36-58 (214)
457 3llm_A ATP-dependent RNA helic 91.5 0.32 1.1E-05 47.4 7.1 22 106-127 77-98 (235)
458 2olj_A Amino acid ABC transpor 91.5 0.089 3E-06 52.3 3.0 23 106-128 51-73 (263)
459 1ji0_A ABC transporter; ATP bi 91.5 0.09 3.1E-06 51.6 3.0 23 106-128 33-55 (240)
460 4g1u_C Hemin import ATP-bindin 91.5 0.09 3.1E-06 52.4 3.0 22 106-127 38-59 (266)
461 2zej_A Dardarin, leucine-rich 91.4 0.084 2.9E-06 49.3 2.6 22 107-128 4-25 (184)
462 2wji_A Ferrous iron transport 91.4 0.1 3.4E-06 47.7 3.1 23 106-128 4-26 (165)
463 1tf7_A KAIC; homohexamer, hexa 91.4 0.31 1.1E-05 54.0 7.7 39 105-145 39-78 (525)
464 2ck3_A ATP synthase subunit al 91.4 0.26 9.1E-06 52.9 6.7 97 90-193 152-271 (510)
465 2qmh_A HPR kinase/phosphorylas 91.4 0.097 3.3E-06 48.8 2.9 23 106-128 35-57 (205)
466 2d2e_A SUFC protein; ABC-ATPas 91.4 0.097 3.3E-06 51.7 3.2 22 106-127 30-51 (250)
467 1g6h_A High-affinity branched- 91.4 0.093 3.2E-06 52.1 3.0 22 106-127 34-55 (257)
468 2j9r_A Thymidine kinase; TK1, 91.3 0.25 8.6E-06 46.8 5.7 109 105-224 28-138 (214)
469 2ff7_A Alpha-hemolysin translo 91.3 0.096 3.3E-06 51.6 3.0 23 106-128 36-58 (247)
470 1nlf_A Regulatory protein REPA 91.3 0.11 3.6E-06 52.5 3.4 23 106-128 31-53 (279)
471 3lv8_A DTMP kinase, thymidylat 91.3 0.59 2E-05 45.3 8.5 26 105-130 27-52 (236)
472 3cmw_A Protein RECA, recombina 91.3 0.34 1.2E-05 60.4 8.3 83 104-193 1430-1518(1706)
473 2zu0_C Probable ATP-dependent 91.2 0.1 3.5E-06 52.0 3.1 23 106-128 47-69 (267)
474 1vpl_A ABC transporter, ATP-bi 91.2 0.099 3.4E-06 51.7 3.0 23 106-128 42-64 (256)
475 3ld9_A DTMP kinase, thymidylat 91.2 0.5 1.7E-05 45.4 7.8 27 104-130 20-46 (223)
476 3iqw_A Tail-anchored protein t 91.1 0.24 8.1E-06 51.1 5.8 42 104-147 15-56 (334)
477 3f9v_A Minichromosome maintena 91.1 0.083 2.8E-06 59.4 2.6 51 78-128 295-350 (595)
478 2ghi_A Transport protein; mult 91.1 0.1 3.5E-06 51.8 3.0 23 106-128 47-69 (260)
479 1mv5_A LMRA, multidrug resista 91.1 0.099 3.4E-06 51.4 2.9 22 106-127 29-50 (243)
480 3io3_A DEHA2D07832P; chaperone 91.1 0.23 7.8E-06 51.5 5.7 43 104-146 17-59 (348)
481 1ltq_A Polynucleotide kinase; 91.1 0.099 3.4E-06 53.4 3.0 22 106-127 3-24 (301)
482 2qi9_C Vitamin B12 import ATP- 91.0 0.11 3.6E-06 51.2 3.0 23 106-128 27-49 (249)
483 4tmk_A Protein (thymidylate ki 91.0 0.62 2.1E-05 44.4 8.3 25 106-130 4-28 (213)
484 2ixe_A Antigen peptide transpo 91.0 0.11 3.6E-06 52.0 3.0 23 106-128 46-68 (271)
485 3b5x_A Lipid A export ATP-bind 90.9 1.2 4.2E-05 49.9 11.9 23 106-128 370-392 (582)
486 2yz2_A Putative ABC transporte 90.8 0.11 3.8E-06 51.7 3.0 22 106-127 34-55 (266)
487 2dyk_A GTP-binding protein; GT 90.8 0.12 4.1E-06 46.7 3.0 23 106-128 2-24 (161)
488 2nq2_C Hypothetical ABC transp 90.8 0.11 3.8E-06 51.3 2.9 23 106-128 32-54 (253)
489 1q3t_A Cytidylate kinase; nucl 90.8 0.13 4.4E-06 50.3 3.4 25 103-127 14-38 (236)
490 4eaq_A DTMP kinase, thymidylat 90.8 0.21 7.2E-06 48.5 4.9 27 104-130 25-51 (229)
491 2ihy_A ABC transporter, ATP-bi 90.8 0.11 3.9E-06 52.0 3.0 23 106-128 48-70 (279)
492 2f9l_A RAB11B, member RAS onco 90.7 0.12 4E-06 49.0 2.9 23 106-128 6-28 (199)
493 2v9p_A Replication protein E1; 90.7 0.12 4.1E-06 52.3 3.1 24 105-128 126-149 (305)
494 3vkw_A Replicase large subunit 90.6 0.42 1.4E-05 50.7 7.2 107 102-224 158-270 (446)
495 4dzz_A Plasmid partitioning pr 90.6 0.18 6E-06 48.0 4.0 42 106-149 2-44 (206)
496 2ocp_A DGK, deoxyguanosine kin 90.6 0.14 4.7E-06 50.4 3.3 25 105-129 2-26 (241)
497 2ce2_X GTPase HRAS; signaling 90.6 0.13 4.4E-06 46.6 3.0 22 107-128 5-26 (166)
498 1ny5_A Transcriptional regulat 90.5 0.73 2.5E-05 48.7 9.2 46 79-128 138-183 (387)
499 1pgv_A TMD-1, tropomodulin TMD 90.4 0.23 7.7E-06 46.5 4.4 117 424-550 40-168 (197)
500 1g8f_A Sulfate adenylyltransfe 90.4 0.17 5.7E-06 55.2 4.0 48 78-129 372-419 (511)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=4.1e-47 Score=431.22 Aligned_cols=315 Identities=18% Similarity=0.264 Sum_probs=252.8
Q ss_pred ccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhc--ccccccCCCcEEEEEeCCCC--CHHHHHHHH
Q 003367 81 RGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFN--EVKVDAHFDKRIWVCFSDPV--DEIRVAKAI 156 (826)
Q Consensus 81 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i 156 (826)
|||++++++|.++|.... ....++|+|+|||||||||||+++|+ +.+++.+|++++||++++.. +...++..|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 599999999999996542 23679999999999999999999998 56788999999999999885 789999999
Q ss_pred HHHhcccch-------hhhhHHHHHHHHHHHhcCC-ceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccHHHHh
Q 003367 157 LESFRDVVS-------AVAAFDTLLRHIEKSVKGK-KFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKEDVAK 228 (826)
Q Consensus 157 ~~~l~~~~~-------~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~~v~~ 228 (826)
+.+++.... ...+.+.+...+++.++++ ||||||||||+.+...|.. .+||+||||||++.++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHH
Confidence 999976421 1234566788999999996 9999999998732212322 27999999999999988
Q ss_pred hcc-ccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHHhhhhcCCcCHHHHHHhhhhh
Q 003367 229 MMR-TTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTSGSLLSLKTTMEQWKTVLDSE 307 (826)
Q Consensus 229 ~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~w~~~~~~~ 307 (826)
.++ ....|+|++|+.++||+||.++|+.... ++.+.+++++|+++|+|+||||+++|+.++.+ . ..|...+...
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~---~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMPV---GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHH
Confidence 765 4467999999999999999999876532 45778899999999999999999999999765 3 2333334333
Q ss_pred cccccccCcCcchhhhhhccCCcHHHHHHhh-----------hhccCCCCceeCHHHHHHHHHHc--CCcccCC-CchHH
Q 003367 308 IWKVEDVEKGLLPPLVISYFDLPSIVRRCFS-----------YCAIFPKGYEINKDHLIKLWMAQ--GYLKVEG-REDME 373 (826)
Q Consensus 308 ~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl-----------~~a~fp~~~~i~~~~li~~w~a~--g~i~~~~-~~~~~ 373 (826)
.+.. ....+..++.+||+.||+++|.||+ |||+||+++.|+ +++|+|+ ||+...+ ....+
T Consensus 355 l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 355 LESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred hhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHH
Confidence 3222 2356899999999999999999999 999999999998 8999999 9998766 56678
Q ss_pred HHHHHHHHHHhhccCcccccCCCCCCeeeEEEEchhHHHHHHHhhCCCC
Q 003367 374 LIGEECFVNLATRSFFQDFERSEYDGSIISCKMHDIVHDFAQFLAQPMC 422 (826)
Q Consensus 374 ~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~~mhdlv~dl~~~~~~~~~ 422 (826)
++++ ++++|+++||++....+ ... .|+|||++|++|+.++.+++
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~---~~~-~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRM---PVL-TFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECS---SSC-EEECCHHHHHHHHTTSCTHH
T ss_pred HHHH-HHHHHHHcCCeeEecCC---Cce-EEEeChHHHHHHHHHHHHHH
Confidence 8888 99999999999976543 222 69999999999998877654
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=5.2e-39 Score=365.97 Aligned_cols=284 Identities=18% Similarity=0.201 Sum_probs=227.4
Q ss_pred cccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCc-EEEEEeCCCCCHHHHHHHHHH
Q 003367 80 VRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDK-RIWVCFSDPVDEIRVAKAILE 158 (826)
Q Consensus 80 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~ 158 (826)
.|||++++++|.++|.... ..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..|++
T Consensus 130 ~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4999999999999997532 4689999999999999999999987778889986 999999999998888888877
Q ss_pred Hhcccc-----------hhhhhHHHHHHHHHHHh---cCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccH
Q 003367 159 SFRDVV-----------SAVAAFDTLLRHIEKSV---KGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKE 224 (826)
Q Consensus 159 ~l~~~~-----------~~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~ 224 (826)
.++... ....+.+.+.+.+++.+ .++|+||||||||+ .+.|+.+ + +||+||||||++
T Consensus 205 lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~f----~---pGSRILVTTRd~ 275 (1221)
T 1vt4_I 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAF----N---LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHHHHH----H---SSCCEEEECSCS
T ss_pred HHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHHHhh----C---CCeEEEEeccCh
Confidence 643211 11234455666777765 68999999999986 4556553 2 799999999999
Q ss_pred HHHhhccccceEEcc------CCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHHhhhhcCCc-CH
Q 003367 225 DVAKMMRTTSMILLA------KLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTSGSLLSLKT-TM 297 (826)
Q Consensus 225 ~v~~~~~~~~~~~l~------~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~ 297 (826)
.++..+.....|.++ +|+.+||++||.+.. +.. ..++..+| |+|+||||+++|+.|+.+. +.
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~ 344 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATW 344 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCH
Confidence 988654444466777 899999999999883 222 12233333 9999999999999998774 67
Q ss_pred HHHHHhhhhhcccccccCcCcchhhhhhccCCcHHH-HHHhhhhccCCCCceeCHHHHHHHHHHcCCcccCCCchHHHHH
Q 003367 298 EQWKTVLDSEIWKVEDVEKGLLPPLVISYFDLPSIV-RRCFSYCAIFPKGYEINKDHLIKLWMAQGYLKVEGREDMELIG 376 (826)
Q Consensus 298 ~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~~fl~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~ 376 (826)
+.|... ....+..++++||+.||+++ |.||++||+||+++.|+++.++.+|+++| ++.+
T Consensus 345 eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedA 404 (1221)
T 1vt4_I 345 DNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDV 404 (1221)
T ss_dssp HHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHH
T ss_pred HHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHH
Confidence 788763 13458899999999999999 99999999999999999999999998887 1347
Q ss_pred HHHHHHHhhccCcccccCCCCCCeeeEEEEchhHHHHH
Q 003367 377 EECFVNLATRSFFQDFERSEYDGSIISCKMHDIVHDFA 414 (826)
Q Consensus 377 ~~~~~~L~~~sll~~~~~~~~~~~~~~~~mhdlv~dl~ 414 (826)
+.++++|+++||++.... .. .|+|||++++++
T Consensus 405 e~~L~eLvdRSLLq~d~~-----~~-rYrMHDLllELr 436 (1221)
T 1vt4_I 405 MVVVNKLHKYSLVEKQPK-----ES-TISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHTSSSSSBCSS-----SS-EEBCCCHHHHHH
T ss_pred HHHHHHHHhhCCEEEeCC-----CC-EEEehHHHHHHh
Confidence 889999999999987421 11 689999999865
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.8e-36 Score=380.66 Aligned_cols=311 Identities=19% Similarity=0.229 Sum_probs=242.6
Q ss_pred cCCccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhccccc-ccCC-CcEEEEEeCCCCC--HHH
Q 003367 76 DVSKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKV-DAHF-DKRIWVCFSDPVD--EIR 151 (826)
Q Consensus 76 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~--~~~ 151 (826)
+++.||||++++++|.++|.... .+.++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ ...
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred CCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHH
Confidence 44569999999999999997653 36789999999999999999999997533 3445 7788999988543 344
Q ss_pred HHHHHHHHhcccc----hhhhhHHHHHHHHHHHhcCC--ceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccHH
Q 003367 152 VAKAILESFRDVV----SAVAAFDTLLRHIEKSVKGK--KFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKED 225 (826)
Q Consensus 152 ~~~~i~~~l~~~~----~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~~ 225 (826)
.+..++..+.... ....+.+++.+.++..+.++ |+||||||||+. .+| ....+|++||||||++.
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~-------~~~~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVL-------KAFDNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHH-------TTTCSSCEEEEEESSTT
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHH-------HhhcCCCEEEEEcCCHH
Confidence 4666777765432 12345678888899999877 999999999852 222 23368999999999999
Q ss_pred HHhh-ccccceEEccC-CCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHHhhhhcCCcCHHHHHHh
Q 003367 226 VAKM-MRTTSMILLAK-LPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTSGSLLSLKTTMEQWKTV 303 (826)
Q Consensus 226 v~~~-~~~~~~~~l~~-L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~w~~~ 303 (826)
++.. ......+++.+ |+++||++||...++... +.+.+++++|+++|+|+||||+++|++|+.+. ..|...
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~ 341 (1249)
T 3sfz_A 269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYY 341 (1249)
T ss_dssp TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHH
T ss_pred HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHH
Confidence 8854 45567899996 999999999999885332 23456789999999999999999999998764 346665
Q ss_pred hhhhcccc----cc----cCcCcchhhhhhccCCcHHHHHHhhhhccCCCCceeCHHHHHHHHHHcCCcccCCCchHHHH
Q 003367 304 LDSEIWKV----ED----VEKGLLPPLVISYFDLPSIVRRCFSYCAIFPKGYEINKDHLIKLWMAQGYLKVEGREDMELI 375 (826)
Q Consensus 304 ~~~~~~~~----~~----~~~~i~~~l~~sy~~L~~~~k~~fl~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~ 375 (826)
+....... .. ....+..++.+||+.||+++|.||+|||+||+++.|+++.++.+|.++ ++.
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~ 410 (1249)
T 3sfz_A 342 LRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEE 410 (1249)
T ss_dssp HHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHH
T ss_pred HHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHH
Confidence 54321111 11 113588899999999999999999999999999999999999999554 466
Q ss_pred HHHHHHHHhhccCcccccCCCCCCeeeEEEEchhHHHHHHHhhCCC
Q 003367 376 GEECFVNLATRSFFQDFERSEYDGSIISCKMHDIVHDFAQFLAQPM 421 (826)
Q Consensus 376 ~~~~~~~L~~~sll~~~~~~~~~~~~~~~~mhdlv~dl~~~~~~~~ 421 (826)
++.++++|++++|++.... +... .|+|||++|++++..+.++
T Consensus 411 ~~~~l~~L~~~sl~~~~~~---~~~~-~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 411 VEDILQEFVNKSLLFCNRN---GKSF-CYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHTTSCEEEES---SSSE-EEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHhccceEEecC---CCce-EEEecHHHHHHHHhhhhHH
Confidence 7899999999999986542 2333 6999999999998876554
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=4.6e-34 Score=329.73 Aligned_cols=305 Identities=19% Similarity=0.232 Sum_probs=228.9
Q ss_pred cCCccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhccccc-ccCC-CcEEEEEeCCCCCHHHHH
Q 003367 76 DVSKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKV-DAHF-DKRIWVCFSDPVDEIRVA 153 (826)
Q Consensus 76 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~ 153 (826)
.++.||||++++++|.++|.... .+.++|+|+||||+||||||++++++.+. +.+| +.++|++++.. +...++
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~ 196 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLL 196 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHH
Confidence 44679999999999999997542 25789999999999999999999997655 6788 58999999875 333344
Q ss_pred HHH---HHHhccc----chhhhhHHHHHHHHHHHhcC--CceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccH
Q 003367 154 KAI---LESFRDV----VSAVAAFDTLLRHIEKSVKG--KKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKE 224 (826)
Q Consensus 154 ~~i---~~~l~~~----~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~ 224 (826)
..+ +..++.. .....+.+.....+...+.+ +++||||||||+. . .+ . +..+|++||||||++
T Consensus 197 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~---~l-~---~l~~~~~ilvTsR~~ 267 (591)
T 1z6t_A 197 MKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--W---VL-K---AFDSQCQILLTTRDK 267 (591)
T ss_dssp HHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--H---HH-H---TTCSSCEEEEEESCG
T ss_pred HHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--H---HH-H---HhcCCCeEEEECCCc
Confidence 433 3344321 11234556677777777765 7999999999752 2 22 2 236789999999999
Q ss_pred HHHhhccccceEEc---cCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHHhhhhcCCcCHHHHH
Q 003367 225 DVAKMMRTTSMILL---AKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTSGSLLSLKTTMEQWK 301 (826)
Q Consensus 225 ~v~~~~~~~~~~~l---~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~w~ 301 (826)
.++..+. ...+++ ++|+.+|+++||...++... ....+.+.+|+++|+|+||||+++|++++... ..|.
T Consensus 268 ~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~-----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~ 339 (591)
T 1z6t_A 268 SVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK-----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWE 339 (591)
T ss_dssp GGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG-----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHH
T ss_pred HHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCc-----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHH
Confidence 8876543 234554 58999999999999886421 12345788999999999999999999997653 3577
Q ss_pred Hhhhhhcccc--------cccCcCcchhhhhhccCCcHHHHHHhhhhccCCCCceeCHHHHHHHHHHcCCcccCCCchHH
Q 003367 302 TVLDSEIWKV--------EDVEKGLLPPLVISYFDLPSIVRRCFSYCAIFPKGYEINKDHLIKLWMAQGYLKVEGREDME 373 (826)
Q Consensus 302 ~~~~~~~~~~--------~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~ 373 (826)
..+....... ......+..++.+||+.||++.|.||+++|+||+++.|+.+.+..+|.++ .
T Consensus 340 ~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~ 408 (591)
T 1z6t_A 340 YYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-----------T 408 (591)
T ss_dssp HHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------H
T ss_pred HHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-----------H
Confidence 6655322111 11123578899999999999999999999999999999999999999543 2
Q ss_pred HHHHHHHHHHhhccCcccccCCCCCCeeeEEEEchhHHHHHHHh
Q 003367 374 LIGEECFVNLATRSFFQDFERSEYDGSIISCKMHDIVHDFAQFL 417 (826)
Q Consensus 374 ~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~~mhdlv~dl~~~~ 417 (826)
+.+..++.+|+++++++.... +... .|+||++++++++..
T Consensus 409 ~~~~~~l~~L~~~~Ll~~~~~---~~~~-~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 409 EEVEDILQEFVNKSLLFCDRN---GKSF-RYYLHDLQVDFLTEK 448 (591)
T ss_dssp HHHHHHHHHHHHTTSSEEEEE---TTEE-EEECCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCeEEecC---CCcc-EEEEcHHHHHHHHhh
Confidence 346789999999999985432 2222 699999999999876
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=4.2e-27 Score=279.37 Aligned_cols=344 Identities=21% Similarity=0.224 Sum_probs=211.6
Q ss_pred hchhhhccCCCCcEEecccccccccccccccccc-ccCCCCccEEEccCCCCccccchhhcCCC-CCcEEeccCCCCCcc
Q 003367 453 ALPSLFDRLTCLRTLCLRCHERHFCLSIARLPRN-IKKLKHLRYLNLSNNDAIYELPEALCDLC-NLQTLDVSNCGNLHA 530 (826)
Q Consensus 453 ~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~-i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~-~L~~L~L~~~~~~~~ 530 (826)
.+|..|.++++|++|+|+ +|...+.+|.. +..+++|++|++++|.+.+.+|..+.++. +|++|++++|.+.+.
T Consensus 309 ~~p~~~~~l~~L~~L~L~-----~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~ 383 (768)
T 3rgz_A 309 AVPPFFGSCSLLESLALS-----SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 383 (768)
T ss_dssp CCCGGGGGCTTCCEEECC-----SSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEE
T ss_pred ccchHHhcCCCccEEECC-----CCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCC
Confidence 446677777778888777 44122255654 77777777777777775557777777776 777777777776666
Q ss_pred cchhhhc--ccCCCeeeecCcccc-cCCccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCC
Q 003367 531 LPQGIAK--LINLRHLINEGTPLL-YLPKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTD 607 (826)
Q Consensus 531 lp~~i~~--L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~ 607 (826)
+|..+.. +++|++|++++|.+. .+|..++++++|+.|++..+...... ...+..+.+|..+. +..- .
T Consensus 384 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~----L~~n----~ 453 (768)
T 3rgz_A 384 ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI--PSSLGSLSKLRDLK----LWLN----M 453 (768)
T ss_dssp CCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCC--CGGGGGCTTCCEEE----CCSS----C
T ss_pred cChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcc--cHHHhcCCCCCEEE----CCCC----c
Confidence 7766665 677777777777776 66777777888888877776553221 12233333333221 1100 0
Q ss_pred hhhhhhhhccCCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCC
Q 003367 608 VGEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCG 687 (826)
Q Consensus 608 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~ 687 (826)
+.......+..+++|+.|+++.|.+.. ..+..+..+++|++|+|++|.+.+.+|.+++.+++|++|+|++|.
T Consensus 454 l~~~~p~~~~~l~~L~~L~L~~N~l~~--------~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 525 (768)
T 3rgz_A 454 LEGEIPQELMYVKTLETLILDFNDLTG--------EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCCS--------CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred ccCcCCHHHcCCCCceEEEecCCcccC--------cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCc
Confidence 111223446677788888888776542 234456677889999999999887778889899999999999998
Q ss_pred CCCCCC-CCCCCCccceeeccccccceEeCcccccC--------------------------------------------
Q 003367 688 KCEQLP-SLGRLPSLESLVVEALSSVRRVGNEFLGI-------------------------------------------- 722 (826)
Q Consensus 688 ~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~-------------------------------------------- 722 (826)
+.+.+| .++.+++|+.|+++++.....++..+...
T Consensus 526 l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (768)
T 3rgz_A 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 605 (768)
T ss_dssp CEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGG
T ss_pred ccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhh
Confidence 888777 78888899999888765332222211100
Q ss_pred ------------------CCC------------------ccccCccCcCCCccceeeccccccccccccccccccCcCCC
Q 003367 723 ------------------ESD------------------DISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIM 766 (826)
Q Consensus 723 ------------------~~~------------------~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l 766 (826)
.+. .-.++..++.+++|+.|+|++|.....+ +..++.+
T Consensus 606 ~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i------p~~l~~L 679 (768)
T 3rgz_A 606 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI------PDEVGDL 679 (768)
T ss_dssp GGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC------CGGGGGC
T ss_pred ccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC------ChHHhCC
Confidence 000 0011222344555555555555322222 3466788
Q ss_pred CccceeeecCCCCCCCCCCCCcccCCcceEEEccccchH---------------------------HHhcCC--CCcccc
Q 003367 767 PRLHRLKLDGCHKLKALPDHLLLTTKMNELTMNWCSVLK---------------------------ERYGRT--GDWRYK 817 (826)
Q Consensus 767 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~---------------------------~~~~~~--~~~~~~ 817 (826)
++|+.|+|++|+....+|..+..+++|+.|++++|+--. ..|... ++|. +
T Consensus 680 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~-~ 758 (768)
T 3rgz_A 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYA-H 758 (768)
T ss_dssp TTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC-------
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCC-C
Confidence 999999999987777889888889999999998884211 013332 2899 9
Q ss_pred ccccCCCCC
Q 003367 818 VSHIPNIRD 826 (826)
Q Consensus 818 i~~ip~~~~ 826 (826)
|+|+|.+++
T Consensus 759 ~~~~~~~~~ 767 (768)
T 3rgz_A 759 HQRSHHHHH 767 (768)
T ss_dssp ---------
T ss_pred CCCccccCC
Confidence 999998875
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=2.6e-25 Score=248.45 Aligned_cols=336 Identities=18% Similarity=0.160 Sum_probs=229.7
Q ss_pred CCcceEEEEEecCCCCccccCCcccchhhhchhhhccCCCCcEEeccccccccccccccc-cccccCCCCccEEEccCCC
Q 003367 424 ETKLRSLSIVHKSNSSTIFPGIRDSVADIALPSLFDRLTCLRTLCLRCHERHFCLSIARL-PRNIKKLKHLRYLNLSNND 502 (826)
Q Consensus 424 ~~~lr~l~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l~~L~~L~Ls~~~ 502 (826)
+..+++|+++++.. ....|..|.++++|++|+|+ ++.....+ |..|.++++|++|+|++|.
T Consensus 29 ~~~l~~L~Ls~n~i-------------~~~~~~~~~~l~~L~~L~L~-----~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 29 PAHVNYVDLSLNSI-------------AELNETSFSRLQDLQFLKVE-----QQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp CTTCCEEECCSSCC-------------CEECTTTTSSCTTCCEEECC-----CCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred CCccCEEEecCCcc-------------CcCChhHhccCccccEEECc-----CCcccceECcccccccccCCEEeCCCCc
Confidence 46788888887732 22346788999999999999 44222234 5678999999999999999
Q ss_pred CccccchhhcCCCCCcEEeccCCCCCcccchh--hhcccCCCeeeecCcccccC-Ccc-CCCCCCCCcCCceeeCcccCc
Q 003367 503 AIYELPEALCDLCNLQTLDVSNCGNLHALPQG--IAKLINLRHLINEGTPLLYL-PKG-LERLTCLRTLSEFTVSDIENV 578 (826)
Q Consensus 503 ~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~--i~~L~~L~~L~l~~~~l~~l-p~~-i~~L~~L~~L~~~~~~~~~~~ 578 (826)
+.+..|..|+++++|++|++++|.+.+..|.. +..+++|++|++++|.+..+ |.. ++++++|++|++.++.....
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~- 169 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI- 169 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC-
T ss_pred cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc-
Confidence 65566888999999999999999976656655 88999999999999999877 444 88999999999888765332
Q ss_pred CcccCccccc--ccccCCCceEEcccCCCCC--hhhhhhhhccCCCcCCceeeEeecCCCccc-----------------
Q 003367 579 SKAGSLQCLQ--NLNHLQGSLVLTALGNVTD--VGEAKSAKLESKKHLVCLRLEFIKLGRVEL----------------- 637 (826)
Q Consensus 579 ~~~~~l~~L~--~L~~L~~~l~~~~l~~~~~--~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~----------------- 637 (826)
....+..+. .|..+. +....+..+.. ........+..+.+|+.|+++.+.+.....
T Consensus 170 -~~~~l~~l~~~~L~~L~--l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 170 -CEEDLLNFQGKHFTLLR--LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp -CTTTSGGGTTCEEEEEE--CTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred -Chhhhhccccccccccc--cccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 112222221 111110 00000000000 001111122334556666665554321100
Q ss_pred ---------------ccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC-CCCCCCcc
Q 003367 638 ---------------VDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP-SLGRLPSL 701 (826)
Q Consensus 638 ---------------~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L 701 (826)
.......+..+ ..++|++|++++|.+.+.+|.++..+++|++|+|++|.+.+..| .++.+++|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 325 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGL-EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGG-TTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ccccccccccchhhhccCcccccccc-cccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC
Confidence 00000000000 23689999999999999889999999999999999999988777 89999999
Q ss_pred ceeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCCCCCC
Q 003367 702 ESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKLK 781 (826)
Q Consensus 702 ~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 781 (826)
++|+|+++.. ..+... .+..+++|++|++++|. +..+. +..+..+++|+.|++++| .++
T Consensus 326 ~~L~Ls~N~l-~~~~~~-------------~~~~l~~L~~L~Ls~N~-l~~~~-----~~~~~~l~~L~~L~L~~N-~l~ 384 (455)
T 3v47_A 326 LKLNLSQNFL-GSIDSR-------------MFENLDKLEVLDLSYNH-IRALG-----DQSFLGLPNLKELALDTN-QLK 384 (455)
T ss_dssp CEEECCSSCC-CEECGG-------------GGTTCTTCCEEECCSSC-CCEEC-----TTTTTTCTTCCEEECCSS-CCS
T ss_pred CEEECCCCcc-CCcChh-------------HhcCcccCCEEECCCCc-ccccC-----hhhccccccccEEECCCC-ccc
Confidence 9999997652 222211 12468999999999994 44432 346778999999999996 477
Q ss_pred CCCCC-CcccCCcceEEEccccc
Q 003367 782 ALPDH-LLLTTKMNELTMNWCSV 803 (826)
Q Consensus 782 ~lp~~-l~~l~~L~~L~l~~c~~ 803 (826)
.+|.. +..+++|+.|++++|+-
T Consensus 385 ~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 385 SVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCCHhHhccCCcccEEEccCCCc
Confidence 77764 46799999999998763
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=3.9e-25 Score=256.24 Aligned_cols=336 Identities=14% Similarity=0.129 Sum_probs=193.7
Q ss_pred chhhhchhhhccCCCCcEEeccccccccc-c-----------cccccccccc--CCCCccEEEccCCCCccccchhhcCC
Q 003367 449 VADIALPSLFDRLTCLRTLCLRCHERHFC-L-----------SIARLPRNIK--KLKHLRYLNLSNNDAIYELPEALCDL 514 (826)
Q Consensus 449 ~l~~~~~~~~~~l~~Lr~L~L~~~~~~~~-~-----------~~~~lp~~i~--~l~~L~~L~Ls~~~~~~~lp~~i~~L 514 (826)
.+.. +|..|.++++|++|+|++|.+.+. . ..+.+|..++ ++++|++|+|++|.+.+.+|..++++
T Consensus 194 ~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 194 NITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp EEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 3444 688999999999999995443220 0 0001899999 99999999999999889999999999
Q ss_pred CCCcEEeccCCC-CCc-ccchhhhcc------cCCCeeeecCcccccCCc--cCCCCCCCCcCCceeeCcccCcCcccCc
Q 003367 515 CNLQTLDVSNCG-NLH-ALPQGIAKL------INLRHLINEGTPLLYLPK--GLERLTCLRTLSEFTVSDIENVSKAGSL 584 (826)
Q Consensus 515 ~~L~~L~L~~~~-~~~-~lp~~i~~L------~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~~~~~~~~~~~~~~~~l 584 (826)
++|++|++++|. +.+ .+|..++.+ ++|++|++++|.+..+|. .++++++|++|++..+.....++....+
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l 352 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSE 352 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEE
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCC
Confidence 999999999998 777 799999887 999999999999999999 8999999999999888764344422333
Q ss_pred ccccccccCCCceEEcccCCCCChhhhhhhhccCCCc-CCceeeEeecCCCccccc-----------------chHHHhh
Q 003367 585 QCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKH-LVCLRLEFIKLGRVELVD-----------------KDNEVLE 646 (826)
Q Consensus 585 ~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~l~~~~~~~-----------------~~~~~~~ 646 (826)
..|+.|.--.+.+. .....+..+.+ |+.|+++.|.+....... .....+.
T Consensus 353 ~~L~~L~L~~N~l~------------~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 420 (636)
T 4eco_A 353 IKLASLNLAYNQIT------------EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420 (636)
T ss_dssp EEESEEECCSSEEE------------ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred CCCCEEECCCCccc------------cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchh
Confidence 33333321111111 11122444455 555655555443211000 0111122
Q ss_pred cCC-------CCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC-C-CC-------CCCccceeeccccc
Q 003367 647 ALQ-------PSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP-S-LG-------RLPSLESLVVEALS 710 (826)
Q Consensus 647 ~l~-------~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~-l~-------~l~~L~~L~L~~~~ 710 (826)
.+. .+++|++|+|++|.+..+++..+..+++|++|+|++|.+. .+| . +. ++++|+.|+|+++.
T Consensus 421 ~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 499 (636)
T 4eco_A 421 NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNK 499 (636)
T ss_dssp SSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSC
T ss_pred hhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCc
Confidence 233 3446666666666666553333445666666666666665 333 1 11 22266666666543
Q ss_pred cceEeCcccc--cCCCC---------ccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCCCC
Q 003367 711 SVRRVGNEFL--GIESD---------DISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHK 779 (826)
Q Consensus 711 ~l~~~~~~~~--~~~~~---------~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 779 (826)
+..++..+. ..... -..++.....+++|+.|++++|..+..-......+..+..+++|+.|+|++|.
T Consensus 500 -l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~- 577 (636)
T 4eco_A 500 -LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND- 577 (636)
T ss_dssp -CCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-
T ss_pred -CCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-
Confidence 222222221 10000 00112222334444555443322110000000012344456666666666644
Q ss_pred CCCCCCCCcccCCcceEEEcccc
Q 003367 780 LKALPDHLLLTTKMNELTMNWCS 802 (826)
Q Consensus 780 l~~lp~~l~~l~~L~~L~l~~c~ 802 (826)
++.+|..+. ++|+.|++++|+
T Consensus 578 l~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 578 IRKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp CCBCCSCCC--TTCCEEECCSCT
T ss_pred CCccCHhHh--CcCCEEECcCCC
Confidence 366665543 466666666664
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=1.8e-24 Score=254.59 Aligned_cols=331 Identities=15% Similarity=0.140 Sum_probs=185.5
Q ss_pred chhhhccCCCCcEEeccccccccc------------ccccccccccc--CCCCccEEEccCCCCccccchhhcCCCCCcE
Q 003367 454 LPSLFDRLTCLRTLCLRCHERHFC------------LSIARLPRNIK--KLKHLRYLNLSNNDAIYELPEALCDLCNLQT 519 (826)
Q Consensus 454 ~~~~~~~l~~Lr~L~L~~~~~~~~------------~~~~~lp~~i~--~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~ 519 (826)
+|..|.++++|++|+|++|.+.+. ..-+.+|..++ ++++|++|+|++|.+.+.+|..|+++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 688899999999999995544320 00002888887 9999999999999888899999999999999
Q ss_pred EeccCCC-CCc-ccchhhhccc-------CCCeeeecCcccccCCc--cCCCCCCCCcCCceeeCcccCcCcccCccccc
Q 003367 520 LDVSNCG-NLH-ALPQGIAKLI-------NLRHLINEGTPLLYLPK--GLERLTCLRTLSEFTVSDIENVSKAGSLQCLQ 588 (826)
Q Consensus 520 L~L~~~~-~~~-~lp~~i~~L~-------~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~ 588 (826)
|+|++|. +.+ .+|..+++++ +|++|++++|.+..+|. .++++++|+.|++..+... .++....+..|.
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~ 598 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLT 598 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEES
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcce
Confidence 9999997 666 7888888877 99999999999999998 8899999999988877654 333222333333
Q ss_pred ccccCCCceEEcccCCCCChhhhhhhhccCCCc-CCceeeEeecCCCccc--------------------ccchHHHhhc
Q 003367 589 NLNHLQGSLVLTALGNVTDVGEAKSAKLESKKH-LVCLRLEFIKLGRVEL--------------------VDKDNEVLEA 647 (826)
Q Consensus 589 ~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~l~~~~~--------------------~~~~~~~~~~ 647 (826)
.|.--.+.+ .. ....+..+.+ |+.|+++.|.+...+. ......++..
T Consensus 599 ~L~Ls~N~l-----~~-------lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~ 666 (876)
T 4ecn_A 599 DLKLDYNQI-----EE-------IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666 (876)
T ss_dssp EEECCSSCC-----SC-------CCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred EEECcCCcc-----cc-------chHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhh
Confidence 222111111 00 0111233333 4444443333221110 0000000000
Q ss_pred CC--CCCCcCeEEEeccCCCCCCCCcc-cCccCCcEEEEecCCCCCCCC-CC--------CCCCccceeeccccccceEe
Q 003367 648 LQ--PSPDLEKLTICDYKSKIISPSWL-MSLTELRMLNLQRCGKCEQLP-SL--------GRLPSLESLVVEALSSVRRV 715 (826)
Q Consensus 648 l~--~~~~L~~L~L~~~~~~~~~p~~l-~~l~~L~~L~L~~~~~~~~l~-~l--------~~l~~L~~L~L~~~~~l~~~ 715 (826)
+. .+++|+.|+|++|.+..+ |.++ ..+++|+.|+|++|.+. .+| .+ .++++|+.|+|++|. +..+
T Consensus 667 l~~~~~~~L~~L~Ls~N~L~~l-p~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~l 743 (876)
T 4ecn_A 667 MDDYKGINASTVTLSYNEIQKF-PTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSL 743 (876)
T ss_dssp TTTCCCCCEEEEECCSSCCCSC-CHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCC
T ss_pred hccccCCCcCEEEccCCcCCcc-CHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCC-Cccc
Confidence 11 123455555555555544 3322 34555555555555554 222 11 122255555555442 2222
Q ss_pred Ccccc--cCCCC---------ccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCCCCCCCCC
Q 003367 716 GNEFL--GIESD---------DISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKLKALP 784 (826)
Q Consensus 716 ~~~~~--~~~~~---------~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp 784 (826)
+..+. ..... ...++.....+++|+.|+|++|+.+..-......+..+..+++|+.|+|++|.. +.+|
T Consensus 744 p~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip 822 (876)
T 4ecn_A 744 SDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVD 822 (876)
T ss_dssp CGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred hHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccC
Confidence 22211 00000 000122234567777777766432111110011134566778888888888654 7788
Q ss_pred CCCcccCCcceEEEccccc
Q 003367 785 DHLLLTTKMNELTMNWCSV 803 (826)
Q Consensus 785 ~~l~~l~~L~~L~l~~c~~ 803 (826)
..+. ++|+.|+|++|+.
T Consensus 823 ~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 823 EKLT--PQLYILDIADNPN 839 (876)
T ss_dssp SCCC--SSSCEEECCSCTT
T ss_pred Hhhc--CCCCEEECCCCCC
Confidence 7654 4788888888863
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=2.2e-24 Score=249.89 Aligned_cols=346 Identities=14% Similarity=0.159 Sum_probs=204.9
Q ss_pred hhCCCC--CCCcceEEEEEecCCCCccccCCcccchhhhchhhhccCCCCcEEeccccccccccccc--cccccccCC--
Q 003367 417 LAQPMC--NETKLRSLSIVHKSNSSTIFPGIRDSVADIALPSLFDRLTCLRTLCLRCHERHFCLSIA--RLPRNIKKL-- 490 (826)
Q Consensus 417 ~~~~~~--~~~~lr~l~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~--~lp~~i~~l-- 490 (826)
+..... ....++.|++.++.... .+|..|.++++|++|+|+ +|..+. .+|..++.+
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~-------------~~p~~l~~l~~L~~L~Ls-----~n~~l~~~~lp~~~~~L~~ 300 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLT-------------KLPTFLKALPEMQLINVA-----CNRGISGEQLKDDWQALAD 300 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCS-------------SCCTTTTTCSSCCEEECT-----TCTTSCHHHHHHHHHHHHH
T ss_pred CchhhhhcccCCCCEEEecCCcCCc-------------cChHHHhcCCCCCEEECc-----CCCCCccccchHHHHhhhc
Confidence 555555 67889999999884333 235666677777777777 331122 356555554
Q ss_pred ----CCccEEEccCCCCccccch--hhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCcccccCCccCCCCCC-
Q 003367 491 ----KHLRYLNLSNNDAIYELPE--ALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPLLYLPKGLERLTC- 563 (826)
Q Consensus 491 ----~~L~~L~Ls~~~~~~~lp~--~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~- 563 (826)
++|++|+|++|. +..+|. .++++++|++|++++|.+.+.+| .++.+++|++|++++|.+..+|..+.++++
T Consensus 301 ~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~ 378 (636)
T 4eco_A 301 APVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQ 378 (636)
T ss_dssp SGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTT
T ss_pred cccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhccc
Confidence 677777777776 446666 67777777777777776555666 666677777777777766666666666666
Q ss_pred CCcCCceeeCcccCcCcccCc---ccccccc----cCCC-----------------ceEEcccCCCCChhhhhhhhccCC
Q 003367 564 LRTLSEFTVSDIENVSKAGSL---QCLQNLN----HLQG-----------------SLVLTALGNVTDVGEAKSAKLESK 619 (826)
Q Consensus 564 L~~L~~~~~~~~~~~~~~~~l---~~L~~L~----~L~~-----------------~l~~~~l~~~~~~~~~~~~~l~~~ 619 (826)
|++|++..+... .++..... ..|..|. .+.+ .+....+..- .+.......+..+
T Consensus 379 L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l 456 (636)
T 4eco_A 379 VENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTG 456 (636)
T ss_dssp CCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTT
T ss_pred CcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccC
Confidence 777766665543 22221111 1122211 0100 0000000000 0011111223346
Q ss_pred CcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCccc--CccCCcEEEEecCCCCCCCC-CCC
Q 003367 620 KHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLM--SLTELRMLNLQRCGKCEQLP-SLG 696 (826)
Q Consensus 620 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~--~l~~L~~L~L~~~~~~~~l~-~l~ 696 (826)
++|+.|+++.|.+........ ......+..+++|+.|+|++|.+..+ |..+. .+++|+.|+|++|.+.+ +| .++
T Consensus 457 ~~L~~L~Ls~N~l~~i~~~~~-~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~ 533 (636)
T 4eco_A 457 SPLSSINLMGNMLTEIPKNSL-KDENENFKNTYLLTSIDLRFNKLTKL-SDDFRATTLPYLVGIDLSYNSFSK-FPTQPL 533 (636)
T ss_dssp CCCSEEECCSSCCSBCCSSSS-EETTEECTTGGGCCEEECCSSCCCBC-CGGGSTTTCTTCCEEECCSSCCSS-CCCGGG
T ss_pred CCCCEEECCCCCCCCcCHHHh-ccccccccccCCccEEECcCCcCCcc-ChhhhhccCCCcCEEECCCCCCCC-cChhhh
Confidence 777777777776552221000 00000112233889999999988866 77776 88999999999998887 55 778
Q ss_pred CCCccceeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecC
Q 003367 697 RLPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDG 776 (826)
Q Consensus 697 ~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 776 (826)
.+++|+.|+|+++..+. ++.+.+.. +.....+++|++|++++|. +..++. .+ +++|+.|+|++
T Consensus 534 ~l~~L~~L~Ls~N~~ls--~N~l~~~~------p~~l~~l~~L~~L~Ls~N~-l~~ip~------~~--~~~L~~L~Ls~ 596 (636)
T 4eco_A 534 NSSTLKGFGIRNQRDAQ--GNRTLREW------PEGITLCPSLTQLQIGSND-IRKVNE------KI--TPNISVLDIKD 596 (636)
T ss_dssp GCSSCCEEECCSCBCTT--CCBCCCCC------CTTGGGCSSCCEEECCSSC-CCBCCS------CC--CTTCCEEECCS
T ss_pred cCCCCCEEECCCCcccc--cCcccccC------hHHHhcCCCCCEEECCCCc-CCccCH------hH--hCcCCEEECcC
Confidence 88999999997544221 22333222 2234578999999999995 466543 22 38999999999
Q ss_pred CCCCCCCC---------CCCcccCCcceEEEccccchH
Q 003367 777 CHKLKALP---------DHLLLTTKMNELTMNWCSVLK 805 (826)
Q Consensus 777 c~~l~~lp---------~~l~~l~~L~~L~l~~c~~l~ 805 (826)
|+... ++ .....+...+..++.+|+.|.
T Consensus 597 N~l~~-~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 597 NPNIS-IDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp CTTCE-EECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred CCCcc-ccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 87543 22 122234445667899999764
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=3.1e-24 Score=252.50 Aligned_cols=133 Identities=14% Similarity=0.143 Sum_probs=86.1
Q ss_pred CcCeEEEeccCCCCCCCCccc--CccCCcEEEEecCCCCCCCC-CCCCCCccceeeccccccceEeCcccccCCCCcccc
Q 003367 653 DLEKLTICDYKSKIISPSWLM--SLTELRMLNLQRCGKCEQLP-SLGRLPSLESLVVEALSSVRRVGNEFLGIESDDISL 729 (826)
Q Consensus 653 ~L~~L~L~~~~~~~~~p~~l~--~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~ 729 (826)
+|+.|+|++|.+..+ |..+. .+++|+.|+|++|.+.+ +| .++.+++|+.|+|+++..+. ++.+.+. +
T Consensus 729 ~L~~L~Ls~N~L~~l-p~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls--~N~l~~~------i 798 (876)
T 4ecn_A 729 LLTTIDLRFNKLTSL-SDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAE--GNRILRQ------W 798 (876)
T ss_dssp GCCEEECCSSCCCCC-CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTT--CCBCCCC------C
T ss_pred CccEEECCCCCCccc-hHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcc--ccccccc------C
Confidence 777788877777765 66665 77788888888887776 44 67777788888777544221 2222222 2
Q ss_pred CccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCCCCCCCCCCCC--------cccCCcceEEEccc
Q 003367 730 SSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKLKALPDHL--------LLTTKMNELTMNWC 801 (826)
Q Consensus 730 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l--------~~l~~L~~L~l~~c 801 (826)
+..+..+++|+.|+|++|. +..++. .+ +++|+.|+|++|+....-+..+ ..+..-+..+|.+|
T Consensus 799 p~~l~~L~~L~~L~Ls~N~-L~~Ip~------~l--~~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC 869 (876)
T 4ecn_A 799 PTGITTCPSLIQLQIGSND-IRKVDE------KL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGC 869 (876)
T ss_dssp CTTGGGCSSCCEEECCSSC-CCBCCS------CC--CSSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESC
T ss_pred hHHHhcCCCCCEEECCCCC-CCccCH------hh--cCCCCEEECCCCCCCccChHHccccccchheeecCCCccccCCC
Confidence 2335579999999999995 466643 22 3799999999987544222222 22223334467888
Q ss_pred cch
Q 003367 802 SVL 804 (826)
Q Consensus 802 ~~l 804 (826)
+.+
T Consensus 870 ~~L 872 (876)
T 4ecn_A 870 DAL 872 (876)
T ss_dssp GGG
T ss_pred CCc
Confidence 876
No 11
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=5.6e-24 Score=232.24 Aligned_cols=304 Identities=16% Similarity=0.143 Sum_probs=225.5
Q ss_pred CCcceEEEEEecCCCCccccCCcccchhhhchhhhccCCCCcEEecccccccccccccccc-ccccCCCCccEEEccCCC
Q 003367 424 ETKLRSLSIVHKSNSSTIFPGIRDSVADIALPSLFDRLTCLRTLCLRCHERHFCLSIARLP-RNIKKLKHLRYLNLSNND 502 (826)
Q Consensus 424 ~~~lr~l~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~l~~L~~L~Ls~~~ 502 (826)
...++.+++..+. +..+.+..|..+++|++|+|+ ++ .+..+| ..|..+++|++|+|++|.
T Consensus 44 l~~l~~l~l~~~~-------------l~~l~~~~~~~l~~L~~L~L~-----~n-~i~~~~~~~~~~l~~L~~L~L~~n~ 104 (390)
T 3o6n_A 44 LNNQKIVTFKNST-------------MRKLPAALLDSFRQVELLNLN-----DL-QIEEIDTYAFAYAHTIQKLYMGFNA 104 (390)
T ss_dssp GCCCSEEEEESCE-------------ESEECTHHHHHCCCCSEEECT-----TS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cCCceEEEecCCc-------------hhhCChhHhcccccCcEEECC-----CC-cccccChhhccCCCCcCEEECCCCC
Confidence 4567777777662 222234568999999999999 55 455554 588999999999999999
Q ss_pred CccccchhhcCCCCCcEEeccCCCCCcccchh-hhcccCCCeeeecCcccccCCc-cCCCCCCCCcCCceeeCcccCcCc
Q 003367 503 AIYELPEALCDLCNLQTLDVSNCGNLHALPQG-IAKLINLRHLINEGTPLLYLPK-GLERLTCLRTLSEFTVSDIENVSK 580 (826)
Q Consensus 503 ~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~~ 580 (826)
+....|..++++++|++|++++|. +..+|.. +.++++|++|++++|.+..++. .++++++|++|++.++..... .
T Consensus 105 l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~ 181 (390)
T 3o6n_A 105 IRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--D 181 (390)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--C
T ss_pred CCcCCHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--c
Confidence 544556678999999999999998 4566665 5899999999999999997755 489999999999988765221 2
Q ss_pred ccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEe
Q 003367 581 AGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTIC 660 (826)
Q Consensus 581 ~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~ 660 (826)
...+..|..|..-.. ....+.....|+.|+++.+.+.... ...+++|+.|+++
T Consensus 182 ~~~l~~L~~L~l~~n----------------~l~~~~~~~~L~~L~l~~n~l~~~~-----------~~~~~~L~~L~l~ 234 (390)
T 3o6n_A 182 LSLIPSLFHANVSYN----------------LLSTLAIPIAVEELDASHNSINVVR-----------GPVNVELTILKLQ 234 (390)
T ss_dssp GGGCTTCSEEECCSS----------------CCSEEECCSSCSEEECCSSCCCEEE-----------CCCCSSCCEEECC
T ss_pred cccccccceeecccc----------------cccccCCCCcceEEECCCCeeeecc-----------ccccccccEEECC
Confidence 222233322221110 0112334467888888887754321 1235799999999
Q ss_pred ccCCCCCCCCcccCccCCcEEEEecCCCCCCCC-CCCCCCccceeeccccccceEeCcccccCCCCccccCccCcCCCcc
Q 003367 661 DYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP-SLGRLPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKL 739 (826)
Q Consensus 661 ~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L 739 (826)
+|.+.+. .++..+++|++|+|++|.+.+..| .++.+++|+.|+|+++. +..++.. ...+++|
T Consensus 235 ~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~--------------~~~l~~L 297 (390)
T 3o6n_A 235 HNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLY--------------GQPIPTL 297 (390)
T ss_dssp SSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECS--------------SSCCTTC
T ss_pred CCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcc--------------cCCCCCC
Confidence 9999884 689999999999999999988766 78999999999999764 3322211 2368999
Q ss_pred ceeeccccccccccccccccccCcCCCCccceeeecCCCCCCCCCCCCcccCCcceEEEccccc
Q 003367 740 KFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKLKALPDHLLLTTKMNELTMNWCSV 803 (826)
Q Consensus 740 ~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 803 (826)
++|++++| .+..++. .+..+++|+.|++++|+ +..+| +..+++|+.|++++|+-
T Consensus 298 ~~L~L~~n-~l~~~~~------~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 298 KVLDLSHN-HLLHVER------NQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp CEEECCSS-CCCCCGG------GHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCE
T ss_pred CEEECCCC-cceecCc------cccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCCc
Confidence 99999999 4555532 45678999999999975 67776 46788999999999874
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=4.1e-24 Score=247.93 Aligned_cols=346 Identities=16% Similarity=0.059 Sum_probs=181.5
Q ss_pred CCcceEEEEEecCCCCccccCCcccchhhhchhhhccCCCCcEEecccccccccccccc-ccccccCCCCccEEEccCCC
Q 003367 424 ETKLRSLSIVHKSNSSTIFPGIRDSVADIALPSLFDRLTCLRTLCLRCHERHFCLSIAR-LPRNIKKLKHLRYLNLSNND 502 (826)
Q Consensus 424 ~~~lr~l~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~-lp~~i~~l~~L~~L~Ls~~~ 502 (826)
+..+++|+++++.. ..+.|..|.++++|++|+|+ +| .+.. .|..|+++++|++|+|++|.
T Consensus 32 ~~~l~~L~Ls~n~i-------------~~~~~~~~~~l~~L~~L~Ls-----~n-~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 32 PNSTECLEFSFNVL-------------PTIQNTTFSRLINLTFLDLT-----RC-QIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp CTTCCEEECTTCCC-------------SEECTTTSTTCTTCSEEECT-----TC-CCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CCcCcEEEccCCcc-------------CcCChhHhccCccceEEECC-----CC-ccceeChhhccCccccCeeeCCCCc
Confidence 55678888777632 22335667777777777777 44 3333 35667777777777777777
Q ss_pred CccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCcccccCC-ccCCCCCCCCcCCceeeCcccCcC-c
Q 003367 503 AIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPLLYLP-KGLERLTCLRTLSEFTVSDIENVS-K 580 (826)
Q Consensus 503 ~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~~~~~~~~~~~~-~ 580 (826)
+.+..|..|+++++|++|++++|.+.+..|..++++++|++|++++|.+..++ ..+..+++|++|++.++......+ .
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 172 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHH
T ss_pred ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhh
Confidence 55555667777777777777777755444566777777777777777777552 233347777777766654421100 0
Q ss_pred ccCccccc--ccccCCCceE---------------------------------------EcccCCCC-------------
Q 003367 581 AGSLQCLQ--NLNHLQGSLV---------------------------------------LTALGNVT------------- 606 (826)
Q Consensus 581 ~~~l~~L~--~L~~L~~~l~---------------------------------------~~~l~~~~------------- 606 (826)
...+..+. .|..-...+. ...+.+..
T Consensus 173 ~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~ 252 (606)
T 3t6q_A 173 MSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252 (606)
T ss_dssp HHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGG
T ss_pred hhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhh
Confidence 11122222 1100000000 00000000
Q ss_pred ------------ChhhhhhhhccCCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccC
Q 003367 607 ------------DVGEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMS 674 (826)
Q Consensus 607 ------------~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~ 674 (826)
.+.......+..+++|+.|+++.+.+.. ++..+..+++|++|++++|.+...+|..+..
T Consensus 253 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 323 (606)
T 3t6q_A 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE---------LPSGLVGLSTLKKLVLSANKFENLCQISASN 323 (606)
T ss_dssp GSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSC---------CCSSCCSCTTCCEEECTTCCCSBGGGGCGGG
T ss_pred cCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCC---------CChhhcccccCCEEECccCCcCcCchhhhhc
Confidence 0001111224445566666666555331 2334555666667777666666655556666
Q ss_pred ccCCcEEEEecCCCCCCCC--CCCCCCccceeeccccccceEe--CcccccCCCC----------ccccCccCcCCCccc
Q 003367 675 LTELRMLNLQRCGKCEQLP--SLGRLPSLESLVVEALSSVRRV--GNEFLGIESD----------DISLSSSSVVFPKLK 740 (826)
Q Consensus 675 l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~--~~~~~~~~~~----------~~~~~~~~~~~~~L~ 740 (826)
+++|++|++++|.+.+.+| .++.+++|++|+++++...... +..+...... ....+..+..+++|+
T Consensus 324 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 403 (606)
T 3t6q_A 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE 403 (606)
T ss_dssp CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCS
T ss_pred cCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCC
Confidence 6666666666666655554 3666667777766654422111 1111110000 000112233455666
Q ss_pred eeeccccccccccccccccccCcCCCCccceeeecCCCCCCCCCCCCcccCCcceEEEcccc
Q 003367 741 FLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKLKALPDHLLLTTKMNELTMNWCS 802 (826)
Q Consensus 741 ~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 802 (826)
+|++++|. +..... +..+..+++|+.|++++|......|..+..+++|++|++++|+
T Consensus 404 ~L~l~~n~-l~~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 404 LLDLAFTR-LKVKDA----QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp EEECTTCC-EECCTT----CCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred eEECCCCc-CCCccc----chhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 66666553 221111 1224566677777777765444445555666677777777664
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=8.4e-24 Score=245.32 Aligned_cols=150 Identities=15% Similarity=0.096 Sum_probs=83.0
Q ss_pred cCCCCCCcCeEEEeccCCCCCCC-CcccCccCCcEEEEecCCCCCCCC-CCCCCCccceeeccccccce-EeCcccccCC
Q 003367 647 ALQPSPDLEKLTICDYKSKIISP-SWLMSLTELRMLNLQRCGKCEQLP-SLGRLPSLESLVVEALSSVR-RVGNEFLGIE 723 (826)
Q Consensus 647 ~l~~~~~L~~L~L~~~~~~~~~p-~~l~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~-~~~~~~~~~~ 723 (826)
.+..+++|++|++++|.+.+.+| ..+..+++|++|++++|.+.+..| .++.+++|++|+++++.... ..+..+....
T Consensus 394 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 473 (606)
T 3vq2_A 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT 473 (606)
T ss_dssp CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC
Confidence 34445556666666655555434 455556666666666665555444 45555666666665443211 1111111100
Q ss_pred CC----------ccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCCCCCCCCCCCCcccC-C
Q 003367 724 SD----------DISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKLKALPDHLLLTT-K 792 (826)
Q Consensus 724 ~~----------~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~-~ 792 (826)
.. ....+..+..+++|++|++++|. +.... +..+..+++|+.|+|++|+ ++.+|..+..++ +
T Consensus 474 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~-----~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~ 546 (606)
T 3vq2_A 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN-LLFLD-----SSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKS 546 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCEE-----GGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTT
T ss_pred CCCEEECCCCcCCccChhhhcccccCCEEECCCCc-CCCcC-----HHHccCCCcCCEEECCCCc-CcccCHhHhhhccc
Confidence 00 00011223456777777777773 33321 2456678888888888865 667888777776 5
Q ss_pred cceEEEccccc
Q 003367 793 MNELTMNWCSV 803 (826)
Q Consensus 793 L~~L~l~~c~~ 803 (826)
|+.|++++||-
T Consensus 547 L~~l~l~~N~~ 557 (606)
T 3vq2_A 547 LAFFNLTNNSV 557 (606)
T ss_dssp CCEEECCSCCC
T ss_pred CcEEEccCCCc
Confidence 88888888764
No 14
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=2.6e-24 Score=255.42 Aligned_cols=304 Identities=22% Similarity=0.171 Sum_probs=192.7
Q ss_pred chhhhccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCC-CCCcEEeccCCCCCcccc
Q 003367 454 LPSLFDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDL-CNLQTLDVSNCGNLHALP 532 (826)
Q Consensus 454 ~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L-~~L~~L~L~~~~~~~~lp 532 (826)
+|..|.++++|++|++++|.+ .+.+|.. .+++|++|+|++|.+.+.+|..+..+ ++|++|++++|.+.+.+|
T Consensus 239 ~~~~l~~l~~L~~L~Ls~n~l-----~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p 311 (768)
T 3rgz_A 239 FSRAISTCTELKLLNISSNQF-----VGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311 (768)
T ss_dssp HHHHTTTCSSCCEEECCSSCC-----EESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCC
T ss_pred ccHHHhcCCCCCEEECCCCcc-----cCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccc
Confidence 355666666666666663322 1223322 56666666666666445666666554 677777777776666667
Q ss_pred hhhhcccCCCeeeecCcccc-cCCcc-CCCCCCCCcCCceeeCcccCcCc-ccCcc-cccccccCCCceEEcccCCCCCh
Q 003367 533 QGIAKLINLRHLINEGTPLL-YLPKG-LERLTCLRTLSEFTVSDIENVSK-AGSLQ-CLQNLNHLQGSLVLTALGNVTDV 608 (826)
Q Consensus 533 ~~i~~L~~L~~L~l~~~~l~-~lp~~-i~~L~~L~~L~~~~~~~~~~~~~-~~~l~-~L~~L~~L~~~l~~~~l~~~~~~ 608 (826)
..++++++|++|++++|.+. .+|.. ++++++|++|++..+......+. ...+. .|..|.--.+.+.-
T Consensus 312 ~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~--------- 382 (768)
T 3rgz_A 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG--------- 382 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEE---------
T ss_pred hHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCC---------
Confidence 77777777777777777666 66655 66677777776666544222111 11111 22222111111110
Q ss_pred hhhhhhhccC--CCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecC
Q 003367 609 GEAKSAKLES--KKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRC 686 (826)
Q Consensus 609 ~~~~~~~l~~--~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~ 686 (826)
.....+.. +++|+.|+++.|.+. +..+..+..+++|++|+|++|.+.+..|..+..+++|+.|+|++|
T Consensus 383 --~~~~~~~~~~~~~L~~L~L~~n~l~--------~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n 452 (768)
T 3rgz_A 383 --PILPNLCQNPKNTLQELYLQNNGFT--------GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452 (768)
T ss_dssp --ECCTTTTCSTTCCCCEEECCSSEEE--------EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred --CcChhhhhcccCCccEEECCCCccc--------cccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCC
Confidence 00111112 556777777766532 223455667788888888888888777888888888888888888
Q ss_pred CCCCCCC-CCCCCCccceeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCC
Q 003367 687 GKCEQLP-SLGRLPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKI 765 (826)
Q Consensus 687 ~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 765 (826)
.+.+.+| .++.+++|++|+++++.. .+..+ .....+++|++|++++|.....+ +..+..
T Consensus 453 ~l~~~~p~~~~~l~~L~~L~L~~N~l--------~~~~p------~~l~~l~~L~~L~L~~N~l~~~~------p~~~~~ 512 (768)
T 3rgz_A 453 MLEGEIPQELMYVKTLETLILDFNDL--------TGEIP------SGLSNCTNLNWISLSNNRLTGEI------PKWIGR 512 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCC--------CSCCC------GGGGGCTTCCEEECCSSCCCSCC------CGGGGG
T ss_pred cccCcCCHHHcCCCCceEEEecCCcc--------cCcCC------HHHhcCCCCCEEEccCCccCCcC------ChHHhc
Confidence 8887777 678888888888886542 22111 12346888999999988533343 345667
Q ss_pred CCccceeeecCCCCCCCCCCCCcccCCcceEEEccccc
Q 003367 766 MPRLHRLKLDGCHKLKALPDHLLLTTKMNELTMNWCSV 803 (826)
Q Consensus 766 l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 803 (826)
+++|+.|+|++|.....+|..+..+++|+.|++++|+-
T Consensus 513 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 88999999999877678888888889999999988863
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=9e-24 Score=243.47 Aligned_cols=288 Identities=16% Similarity=0.151 Sum_probs=216.7
Q ss_pred hchhhhccCCCCcEEeccccccccccccccc-cccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCccc
Q 003367 453 ALPSLFDRLTCLRTLCLRCHERHFCLSIARL-PRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHAL 531 (826)
Q Consensus 453 ~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~l 531 (826)
+.+..|.++++|++|+|+ +| .+..+ |..|+.+++|++|+|++|.+.+..|..|+++++|++|+|++|.+. .+
T Consensus 66 lp~~~~~~l~~L~~L~L~-----~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l 138 (597)
T 3oja_B 66 LPAALLDSFRQVELLNLN-----DL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SL 138 (597)
T ss_dssp ECTHHHHHCCCCSEEECT-----TS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred cCHHHHccCCCCcEEECC-----CC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CC
Confidence 335678999999999999 55 45555 458999999999999999955555566899999999999999854 55
Q ss_pred chh-hhcccCCCeeeecCcccccCCc-cCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChh
Q 003367 532 PQG-IAKLINLRHLINEGTPLLYLPK-GLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVG 609 (826)
Q Consensus 532 p~~-i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~ 609 (826)
|.. |+++++|++|++++|.+..++. .++++++|++|++.++..... ....+..|..|..-.+
T Consensus 139 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~l~~L~~L~l~~n-------------- 202 (597)
T 3oja_B 139 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYN-------------- 202 (597)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC--CGGGCTTCSEEECCSS--------------
T ss_pred CHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc--ChhhhhhhhhhhcccC--------------
Confidence 554 6899999999999999997765 589999999999988765221 2222333332221110
Q ss_pred hhhhhhccCCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCC
Q 003367 610 EAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKC 689 (826)
Q Consensus 610 ~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~ 689 (826)
....+.....|+.|+++.+.+.... . ..+++|+.|+|++|.+.+ +.++..+++|+.|+|++|.+.
T Consensus 203 --~l~~l~~~~~L~~L~ls~n~l~~~~---------~--~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~ 267 (597)
T 3oja_B 203 --LLSTLAIPIAVEELDASHNSINVVR---------G--PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE 267 (597)
T ss_dssp --CCSEEECCTTCSEEECCSSCCCEEE---------C--SCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC
T ss_pred --ccccccCCchhheeeccCCcccccc---------c--ccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccC
Confidence 1112344567888888887754322 1 124689999999999988 678999999999999999998
Q ss_pred CCCC-CCCCCCccceeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCCCc
Q 003367 690 EQLP-SLGRLPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPR 768 (826)
Q Consensus 690 ~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~ 768 (826)
+..| .++.+++|+.|+|+++. +..++.. ...+|+|+.|+|++| .+..++ ..+..+++
T Consensus 268 ~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~--------------~~~l~~L~~L~Ls~N-~l~~i~------~~~~~l~~ 325 (597)
T 3oja_B 268 KIMYHPFVKMQRLERLYISNNR-LVALNLY--------------GQPIPTLKVLDLSHN-HLLHVE------RNQPQFDR 325 (597)
T ss_dssp EEESGGGTTCSSCCEEECTTSC-CCEEECS--------------SSCCTTCCEEECCSS-CCCCCG------GGHHHHTT
T ss_pred CCCHHHhcCccCCCEEECCCCC-CCCCCcc--------------cccCCCCcEEECCCC-CCCccC------cccccCCC
Confidence 8777 88999999999999764 3222211 236899999999999 455543 34567999
Q ss_pred cceeeecCCCCCCCCCCCCcccCCcceEEEccccc
Q 003367 769 LHRLKLDGCHKLKALPDHLLLTTKMNELTMNWCSV 803 (826)
Q Consensus 769 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 803 (826)
|+.|+|++|+ +..+| +..+++|+.|++++|+-
T Consensus 326 L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 326 LENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp CSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCE
T ss_pred CCEEECCCCC-CCCcC--hhhcCCCCEEEeeCCCC
Confidence 9999999975 66676 46688999999999874
No 16
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=2.4e-23 Score=233.81 Aligned_cols=296 Identities=18% Similarity=0.201 Sum_probs=186.8
Q ss_pred CCcceEEEEEecCCCCccccCCcccchhhhchhhhccCCCCcEEeccccccccccccccc-cccccCCCCccEEEccCCC
Q 003367 424 ETKLRSLSIVHKSNSSTIFPGIRDSVADIALPSLFDRLTCLRTLCLRCHERHFCLSIARL-PRNIKKLKHLRYLNLSNND 502 (826)
Q Consensus 424 ~~~lr~l~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l~~L~~L~Ls~~~ 502 (826)
+..++.|+++.+.. ..+.+..|.++++|++|+|+ +| .+..+ |..|.++++|++|+|++|.
T Consensus 31 ~~~l~~L~L~~n~l-------------~~~~~~~~~~l~~L~~L~L~-----~n-~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 31 PTETRLLDLGKNRI-------------KTLNQDEFASFPHLEELELN-----EN-IVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp CTTCSEEECCSSCC-------------CEECTTTTTTCTTCCEEECT-----TS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCCcEEECCCCcc-------------ceECHhHccCCCCCCEEECC-----CC-ccCEeChhhhhCCccCCEEECCCCc
Confidence 44566666665522 22235567777777888777 44 33333 5677777778888887777
Q ss_pred Cccccch-hhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCcccccC-CccCCCCCCCCcCCceeeCcccCcCc
Q 003367 503 AIYELPE-ALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPLLYL-PKGLERLTCLRTLSEFTVSDIENVSK 580 (826)
Q Consensus 503 ~~~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~~~~~~~~~~~~~ 580 (826)
+..+|. .|.++++|++|+|++|.+....|..+..+++|++|++++|.+..+ |..+.++++|++|++..+....
T Consensus 92 -l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---- 166 (477)
T 2id5_A 92 -LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS---- 166 (477)
T ss_dssp -CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS----
T ss_pred -CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc----
Confidence 555554 467777778888877776666667777777778887777777754 3457777777777766554311
Q ss_pred ccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEe
Q 003367 581 AGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTIC 660 (826)
Q Consensus 581 ~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~ 660 (826)
.....+..+++|+.|+++.+.+.... ...+..+++|++|+++
T Consensus 167 ------------------------------~~~~~l~~l~~L~~L~l~~n~i~~~~--------~~~~~~l~~L~~L~l~ 208 (477)
T 2id5_A 167 ------------------------------IPTEALSHLHGLIVLRLRHLNINAIR--------DYSFKRLYRLKVLEIS 208 (477)
T ss_dssp ------------------------------CCHHHHTTCTTCCEEEEESCCCCEEC--------TTCSCSCTTCCEEEEE
T ss_pred ------------------------------cChhHhcccCCCcEEeCCCCcCcEeC--------hhhcccCcccceeeCC
Confidence 01122445566777777766543221 2345566778888888
Q ss_pred ccCCCCCCCCcccCccCCcEEEEecCCCCCCCC-CCCCCCccceeeccccccceEeCcccccCCCCccccCccCcCCCcc
Q 003367 661 DYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP-SLGRLPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKL 739 (826)
Q Consensus 661 ~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L 739 (826)
+|...+..|.......+|++|+|++|.+.+..+ .+..+++|+.|+|+++. +..++... +..+++|
T Consensus 209 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-------------~~~l~~L 274 (477)
T 2id5_A 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSM-------------LHELLRL 274 (477)
T ss_dssp CCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTS-------------CTTCTTC
T ss_pred CCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccChhh-------------ccccccC
Confidence 776655546555556678888888877664332 56777788888887654 22222111 2356778
Q ss_pred ceeeccccccccccccccccccCcCCCCccceeeecCCCCCCCCCCC-CcccCCcceEEEcccc
Q 003367 740 KFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKLKALPDH-LLLTTKMNELTMNWCS 802 (826)
Q Consensus 740 ~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~ 802 (826)
+.|++++| .+..+. +..+..+++|+.|+|++| .++.+|.. +..+++|+.|++++|+
T Consensus 275 ~~L~L~~n-~l~~~~-----~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 275 QEIQLVGG-QLAVVE-----PYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CEEECCSS-CCSEEC-----TTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred CEEECCCC-ccceEC-----HHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 88888777 333332 235567778888888875 45666653 4567778888887766
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=2.4e-23 Score=241.50 Aligned_cols=343 Identities=17% Similarity=0.157 Sum_probs=206.9
Q ss_pred CCcceEEEEEecCCCCccccCCcccchhhhchhhhccCCCCcEEeccccccccccccccc-cccccCCCCccEEEccCCC
Q 003367 424 ETKLRSLSIVHKSNSSTIFPGIRDSVADIALPSLFDRLTCLRTLCLRCHERHFCLSIARL-PRNIKKLKHLRYLNLSNND 502 (826)
Q Consensus 424 ~~~lr~l~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l~~L~~L~Ls~~~ 502 (826)
+..++.|+++++.. ..+.+..|.++++|++|+|+ +| .+..+ |..|.++++|++|+|++|.
T Consensus 31 ~~~l~~L~Ls~n~l-------------~~~~~~~~~~l~~L~~L~Ls-----~n-~l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 31 PSSTKNIDLSFNPL-------------KILKSYSFSNFSELQWLDLS-----RC-EIETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp CTTCCEEECTTSCC-------------CEECTTTTTTCTTCCEEECT-----TC-CCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CCCcCEEECCCCCc-------------CEeChhhccCCccCcEEeCC-----CC-cccccCHHHhhchhhcCEeECCCCc
Confidence 46778888777622 22335578888888888888 44 44444 5678888888888888888
Q ss_pred CccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCcccc--cCCccCCCCCCCCcCCceeeCcccCcCc
Q 003367 503 AIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPLL--YLPKGLERLTCLRTLSEFTVSDIENVSK 580 (826)
Q Consensus 503 ~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~~~~~~~~~~~~~ 580 (826)
+.+..|..|+++++|++|++++|.+.+..|..++++++|++|++++|.+. .+|..++++++|++|++.++..... .
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~--~ 169 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI--T 169 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE--C
T ss_pred ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec--C
Confidence 44445778888888888888888855555577888888888888888887 4678888888888888877655322 1
Q ss_pred ccCccccccccc----C---CC-------------ceEEcccCCCCChhhhhhhhccCCCcCCceeeEeecCCCccc---
Q 003367 581 AGSLQCLQNLNH----L---QG-------------SLVLTALGNVTDVGEAKSAKLESKKHLVCLRLEFIKLGRVEL--- 637 (826)
Q Consensus 581 ~~~l~~L~~L~~----L---~~-------------~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~--- 637 (826)
...+..+.+|.. + .+ .+....+..-..........+.++..|+.+.+..........
T Consensus 170 ~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~ 249 (606)
T 3vq2_A 170 VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249 (606)
T ss_dssp TTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred hhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccc
Confidence 122222222211 0 00 000000000000011222233444444444443332211000
Q ss_pred ----------------------ccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCCCC
Q 003367 638 ----------------------VDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLPSL 695 (826)
Q Consensus 638 ----------------------~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l 695 (826)
.......+. +..+++|+.|++++|.+..+ | ++..+++|++|++++|.+ +.+|.+
T Consensus 250 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l-~-~l~~~~~L~~L~l~~n~l-~~lp~~ 325 (606)
T 3vq2_A 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYL-E-DVPKHFKWQSLSIIRCQL-KQFPTL 325 (606)
T ss_dssp CCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCC-C-CCCTTCCCSEEEEESCCC-SSCCCC
T ss_pred cChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhh-h-hccccccCCEEEcccccC-cccccC
Confidence 001111222 55677888888888888776 5 778888888888888888 677766
Q ss_pred CCCCccceeeccccccceEeC--------------cccccCCCCccccCccCcCCCccceeecccccccccccccccccc
Q 003367 696 GRLPSLESLVVEALSSVRRVG--------------NEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQK 761 (826)
Q Consensus 696 ~~l~~L~~L~L~~~~~l~~~~--------------~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 761 (826)
.+++|+.|+++++..+.... +.+.+.. ..+.....+++|++|++++|. +..+ +.
T Consensus 326 -~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~----~~~~~~~~~~~L~~L~L~~n~-l~~~------~~ 393 (606)
T 3vq2_A 326 -DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSG----CCSYSDLGTNSLRHLDLSFNG-AIIM------SA 393 (606)
T ss_dssp -CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEE----ECCHHHHCCSCCCEEECCSCS-EEEE------CC
T ss_pred -CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCc----chhhhhccCCcccEeECCCCc-cccc------hh
Confidence 78888888887764333221 0000000 001122356667777776663 3332 23
Q ss_pred CcCCCCccceeeecCCCCCCCCC-CCCcccCCcceEEEccccc
Q 003367 762 DIKIMPRLHRLKLDGCHKLKALP-DHLLLTTKMNELTMNWCSV 803 (826)
Q Consensus 762 ~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~ 803 (826)
.+..+++|+.|++++|......| ..+..+++|+.|++++|..
T Consensus 394 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 436 (606)
T 3vq2_A 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436 (606)
T ss_dssp CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC
T ss_pred hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC
Confidence 56678888888888876555445 4667788888998888863
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=2.9e-23 Score=236.01 Aligned_cols=345 Identities=18% Similarity=0.131 Sum_probs=205.2
Q ss_pred CcceEEEEEecCCCCccccCCcccchhhhchhhhccCCCCcEEeccccccccccccccc-cccccCCCCccEEEccCCCC
Q 003367 425 TKLRSLSIVHKSNSSTIFPGIRDSVADIALPSLFDRLTCLRTLCLRCHERHFCLSIARL-PRNIKKLKHLRYLNLSNNDA 503 (826)
Q Consensus 425 ~~lr~l~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l~~L~~L~Ls~~~~ 503 (826)
..+++|+++++... ...|..|.++++|++|+|+ +| .+..+ |..|+++++|++|+|++|.
T Consensus 21 ~~L~~L~Ls~n~i~-------------~~~~~~~~~l~~L~~L~Ls-----~n-~l~~~~~~~~~~l~~L~~L~Ls~N~- 80 (520)
T 2z7x_B 21 QKTTILNISQNYIS-------------ELWTSDILSLSKLRILIIS-----HN-RIQYLDISVFKFNQELEYLDLSHNK- 80 (520)
T ss_dssp TTCSEEECCSSCCC-------------CCCHHHHTTCTTCCEEECC-----SS-CCCEEEGGGGTTCTTCCEEECCSSC-
T ss_pred ccccEEECCCCccc-------------ccChhhccccccccEEecC-----CC-ccCCcChHHhhcccCCCEEecCCCc-
Confidence 67778887777322 2346788899999999998 44 44444 6788999999999999998
Q ss_pred ccccchhhcCCCCCcEEeccCCCCCc-ccchhhhcccCCCeeeecCcccccCCccCCCCCCC--CcCCceeeCc--ccCc
Q 003367 504 IYELPEALCDLCNLQTLDVSNCGNLH-ALPQGIAKLINLRHLINEGTPLLYLPKGLERLTCL--RTLSEFTVSD--IENV 578 (826)
Q Consensus 504 ~~~lp~~i~~L~~L~~L~L~~~~~~~-~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L--~~L~~~~~~~--~~~~ 578 (826)
++.+|.. .+++|++|++++|.+.+ .+|..++++++|++|++++|.+.. ..+..+++| +.|++..+.. ....
T Consensus 81 l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~ 156 (520)
T 2z7x_B 81 LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKED 156 (520)
T ss_dssp CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCC
T ss_pred eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccc
Confidence 6688876 89999999999998665 478889999999999999888765 345666777 7777776654 1111
Q ss_pred C-cccC-----------------------cccccccccCCCceEEc--------------ccCCCCCh----------hh
Q 003367 579 S-KAGS-----------------------LQCLQNLNHLQGSLVLT--------------ALGNVTDV----------GE 610 (826)
Q Consensus 579 ~-~~~~-----------------------l~~L~~L~~L~~~l~~~--------------~l~~~~~~----------~~ 610 (826)
+ .... +..+..|..+. +... .+.....+ ..
T Consensus 157 ~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~--l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 234 (520)
T 2z7x_B 157 PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN--IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234 (520)
T ss_dssp TTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECC--EEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEH
T ss_pred cccccccccceEEEEeccCcchhhhhhhhhhcccceeecc--ccccccccccceeecchhhhccccchhhccccccccCH
Confidence 0 0011 00111111110 0000 00000000 00
Q ss_pred hh---hhhccCCCcCCceeeEeecCCC-cccc----------------------cch-HHHhh-----------------
Q 003367 611 AK---SAKLESKKHLVCLRLEFIKLGR-VELV----------------------DKD-NEVLE----------------- 646 (826)
Q Consensus 611 ~~---~~~l~~~~~L~~L~l~~~~l~~-~~~~----------------------~~~-~~~~~----------------- 646 (826)
.. ........+|+.|+++.+.+.. .... ... ..+..
T Consensus 235 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l 314 (520)
T 2z7x_B 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM 314 (520)
T ss_dssp HHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcc
Confidence 00 0000001234444444433220 0000 000 00000
Q ss_pred ----cCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCC--CCC-CCCCCCccceeeccccccceEeCcc-
Q 003367 647 ----ALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCE--QLP-SLGRLPSLESLVVEALSSVRRVGNE- 718 (826)
Q Consensus 647 ----~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~--~l~-~l~~l~~L~~L~L~~~~~l~~~~~~- 718 (826)
....+++|++|++++|.+.+..|.++..+++|++|+|++|.+.+ .+| .++.+++|++|+++++.....++..
T Consensus 315 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~ 394 (520)
T 2z7x_B 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394 (520)
T ss_dssp CCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS
T ss_pred ccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch
Confidence 01467788888888888888668888888888888888888875 344 5778888888888866532212221
Q ss_pred cccCCCC---ccc---c-CccCcCC-CccceeeccccccccccccccccccCcCCCCccceeeecCCCCCCCCCCC-Ccc
Q 003367 719 FLGIESD---DIS---L-SSSSVVF-PKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKLKALPDH-LLL 789 (826)
Q Consensus 719 ~~~~~~~---~~~---~-~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~ 789 (826)
+...... ..+ + ......+ ++|+.|++++| .+..++ ..+..+++|+.|++++| .++.+|.. +..
T Consensus 395 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip------~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~ 466 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIP------KQVVKLEALQELNVASN-QLKSVPDGIFDR 466 (520)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCC------GGGGGCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred hccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccc------hhhhcCCCCCEEECCCC-cCCccCHHHhcc
Confidence 1110000 000 0 0000122 57778888777 444443 34457899999999996 47788886 777
Q ss_pred cCCcceEEEccccc
Q 003367 790 TTKMNELTMNWCSV 803 (826)
Q Consensus 790 l~~L~~L~l~~c~~ 803 (826)
+++|++|++++|+-
T Consensus 467 l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 467 LTSLQKIWLHTNPW 480 (520)
T ss_dssp CTTCCEEECCSSCB
T ss_pred CCcccEEECcCCCC
Confidence 88999999998874
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=7.6e-23 Score=245.38 Aligned_cols=134 Identities=19% Similarity=0.192 Sum_probs=107.6
Q ss_pred CCCcceEEEEEecCCCCccccCCcccchhhhchhhhccCCCCcEEeccccccccccccccc-cccccCCCCccEEEccCC
Q 003367 423 NETKLRSLSIVHKSNSSTIFPGIRDSVADIALPSLFDRLTCLRTLCLRCHERHFCLSIARL-PRNIKKLKHLRYLNLSNN 501 (826)
Q Consensus 423 ~~~~lr~l~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l~~L~~L~Ls~~ 501 (826)
.+..++.|+++++... ...|..|.++++|++|+|+ +|..+..+ |..|.++++|++|+|++|
T Consensus 22 lp~~l~~LdLs~N~i~-------------~i~~~~~~~l~~L~~LdLs-----~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIR-------------TVTASSFPFLEQLQLLELG-----SQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp SCTTCCEEEEESCCCC-------------EECSSSCSSCCSCSEEEEC-----TTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred CCCCcCEEECCCCcCC-------------ccChhHCcccccCeEEeCC-----CCCCccccCHHHhcCCCCCCEEECCCC
Confidence 4678999999988332 2346778899999999998 44334455 678999999999999999
Q ss_pred CCccccchhhcCCCCCcEEeccCCCCCcccchh--hhcccCCCeeeecCcccccCC--ccCCCCCCCCcCCceeeCc
Q 003367 502 DAIYELPEALCDLCNLQTLDVSNCGNLHALPQG--IAKLINLRHLINEGTPLLYLP--KGLERLTCLRTLSEFTVSD 574 (826)
Q Consensus 502 ~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~--i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~~~~~~~ 574 (826)
.+.+..|..|+++++|++|+|++|.+.+.+|.. ++++++|++|++++|.+..++ ..++++++|++|++.++..
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 865666888999999999999999877666665 889999999999999888653 4688999999998887765
No 20
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=4.8e-23 Score=221.17 Aligned_cols=302 Identities=19% Similarity=0.202 Sum_probs=220.5
Q ss_pred CCcceEEEEEecCCCCccccCCcccchhhhchhhhccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCC
Q 003367 424 ETKLRSLSIVHKSNSSTIFPGIRDSVADIALPSLFDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDA 503 (826)
Q Consensus 424 ~~~lr~l~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~ 503 (826)
.+.++.+++..+.... ++ .+..+++|++|+++ +| .+..+|. +..+++|++|++++|.
T Consensus 43 l~~L~~L~l~~~~i~~--------------~~-~~~~~~~L~~L~l~-----~n-~i~~~~~-~~~l~~L~~L~L~~n~- 99 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS--------------IQ-GIEYLTNLEYLNLN-----GN-QITDISP-LSNLVKLTNLYIGTNK- 99 (347)
T ss_dssp HTTCSEEECCSSCCCC--------------CT-TGGGCTTCCEEECC-----SS-CCCCCGG-GTTCTTCCEEECCSSC-
T ss_pred cccccEEEEeCCcccc--------------ch-hhhhcCCccEEEcc-----CC-ccccchh-hhcCCcCCEEEccCCc-
Confidence 3567888887763221 12 37789999999999 55 5666665 8899999999999998
Q ss_pred ccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCcccccCCccCCCCCCCCcCCceeeCcccCcCcccC
Q 003367 504 IYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPLLYLPKGLERLTCLRTLSEFTVSDIENVSKAGS 583 (826)
Q Consensus 504 ~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~ 583 (826)
+..+| .+.++++|++|++++|. +..+|. +..+++|++|++++|.....+..+..+++|++|++..+..... ..
T Consensus 100 i~~~~-~~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~ 172 (347)
T 4fmz_A 100 ITDIS-ALQNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV----TP 172 (347)
T ss_dssp CCCCG-GGTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCC----GG
T ss_pred ccCch-HHcCCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCc----hh
Confidence 67776 49999999999999998 455655 8899999999999886655555688999999998887755221 11
Q ss_pred cccccccccCCCceEEcccCCCCChhhhhhhhccCCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccC
Q 003367 584 LQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYK 663 (826)
Q Consensus 584 l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 663 (826)
+..+.+|..+ .+... .+... ..+..+++|+.+.++.+.+.... .+..+++|++|++++|.
T Consensus 173 ~~~l~~L~~L----~l~~n-~l~~~-----~~~~~l~~L~~L~l~~n~l~~~~----------~~~~~~~L~~L~l~~n~ 232 (347)
T 4fmz_A 173 IANLTDLYSL----SLNYN-QIEDI-----SPLASLTSLHYFTAYVNQITDIT----------PVANMTRLNSLKIGNNK 232 (347)
T ss_dssp GGGCTTCSEE----ECTTS-CCCCC-----GGGGGCTTCCEEECCSSCCCCCG----------GGGGCTTCCEEECCSSC
T ss_pred hccCCCCCEE----EccCC-ccccc-----ccccCCCccceeecccCCCCCCc----------hhhcCCcCCEEEccCCc
Confidence 3334444322 11111 11111 12667788999998887754322 15567899999999999
Q ss_pred CCCCCCCcccCccCCcEEEEecCCCCCCCCCCCCCCccceeeccccccceEeCcccccCCCCccccCccCcCCCccceee
Q 003367 664 SKIISPSWLMSLTELRMLNLQRCGKCEQLPSLGRLPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLE 743 (826)
Q Consensus 664 ~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 743 (826)
+... |. +..+++|++|++++|.+.+ ++.+..+++|+.|++++|. +..++ ....+++|+.|+
T Consensus 233 l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~-l~~~~---------------~~~~l~~L~~L~ 293 (347)
T 4fmz_A 233 ITDL-SP-LANLSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSNQ-ISDIS---------------VLNNLSQLNSLF 293 (347)
T ss_dssp CCCC-GG-GTTCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSC-CCCCG---------------GGGGCTTCSEEE
T ss_pred cCCC-cc-hhcCCCCCEEECCCCccCC-ChhHhcCCCcCEEEccCCc-cCCCh---------------hhcCCCCCCEEE
Confidence 9987 44 8899999999999998765 5778899999999999764 22211 134789999999
Q ss_pred ccccccccccccccccccCcCCCCccceeeecCCCCCCCCCCCCcccCCcceEEEcccc
Q 003367 744 FRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKLKALPDHLLLTTKMNELTMNWCS 802 (826)
Q Consensus 744 l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 802 (826)
+++|. +.... +..+..+++|+.|++++|+ +..++. +..+++|++|++++|+
T Consensus 294 L~~n~-l~~~~-----~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 294 LNNNQ-LGNED-----MEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp CCSSC-CCGGG-----HHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred CcCCc-CCCcC-----hhHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 99994 33322 2345679999999999987 555655 7789999999999986
No 21
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=3.5e-23 Score=222.28 Aligned_cols=284 Identities=20% Similarity=0.274 Sum_probs=217.9
Q ss_pred hccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhc
Q 003367 458 FDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAK 537 (826)
Q Consensus 458 ~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~ 537 (826)
+..+++|+.|+++ ++ .+..+| .+..+++|++|++++|. +..+|. +.++++|++|++++|. +..+| .+..
T Consensus 40 ~~~l~~L~~L~l~-----~~-~i~~~~-~~~~~~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~~~ 108 (347)
T 4fmz_A 40 QEELESITKLVVA-----GE-KVASIQ-GIEYLTNLEYLNLNGNQ-ITDISP-LSNLVKLTNLYIGTNK-ITDIS-ALQN 108 (347)
T ss_dssp HHHHTTCSEEECC-----SS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTT
T ss_pred chhcccccEEEEe-----CC-ccccch-hhhhcCCccEEEccCCc-cccchh-hhcCCcCCEEEccCCc-ccCch-HHcC
Confidence 5678999999999 55 556665 48899999999999998 777877 9999999999999998 45565 6999
Q ss_pred ccCCCeeeecCcccccCCccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhcc
Q 003367 538 LINLRHLINEGTPLLYLPKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLE 617 (826)
Q Consensus 538 L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~ 617 (826)
+++|++|++++|.+..+|. +..+++|+.|++.++......+. +..+.+|..+ .+.... +... ..+.
T Consensus 109 l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~---~~~l~~L~~L----~l~~~~-~~~~-----~~~~ 174 (347)
T 4fmz_A 109 LTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP---LSNMTGLNYL----TVTESK-VKDV-----TPIA 174 (347)
T ss_dssp CTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG---GTTCTTCCEE----ECCSSC-CCCC-----GGGG
T ss_pred CCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc---hhhCCCCcEE----EecCCC-cCCc-----hhhc
Confidence 9999999999999998877 88999999999988865444333 3333333322 111111 1111 1267
Q ss_pred CCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCCCCCC
Q 003367 618 SKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLPSLGR 697 (826)
Q Consensus 618 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~ 697 (826)
.+++|+.|+++.+.+.... .+..+++|+.|++++|.+....+ +..+++|++|++++|.+.+.. .+..
T Consensus 175 ~l~~L~~L~l~~n~l~~~~----------~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~-~~~~ 241 (347)
T 4fmz_A 175 NLTDLYSLSLNYNQIEDIS----------PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS-PLAN 241 (347)
T ss_dssp GCTTCSEEECTTSCCCCCG----------GGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGTT
T ss_pred cCCCCCEEEccCCcccccc----------cccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc-chhc
Confidence 7889999999888754322 25567899999999999988733 889999999999999987544 4889
Q ss_pred CCccceeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCC
Q 003367 698 LPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGC 777 (826)
Q Consensus 698 l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c 777 (826)
+++|+.|+++++. +..+ . ....+++|++|++++| .+..++ .+..+++|+.|++++|
T Consensus 242 l~~L~~L~l~~n~-l~~~-------~--------~~~~l~~L~~L~l~~n-~l~~~~-------~~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 242 LSQLTWLEIGTNQ-ISDI-------N--------AVKDLTKLKMLNVGSN-QISDIS-------VLNNLSQLNSLFLNNN 297 (347)
T ss_dssp CTTCCEEECCSSC-CCCC-------G--------GGTTCTTCCEEECCSS-CCCCCG-------GGGGCTTCSEEECCSS
T ss_pred CCCCCEEECCCCc-cCCC-------h--------hHhcCCCcCEEEccCC-ccCCCh-------hhcCCCCCCEEECcCC
Confidence 9999999999764 2211 1 1347899999999999 455542 3567999999999998
Q ss_pred CCCCCCCCCCcccCCcceEEEccccc
Q 003367 778 HKLKALPDHLLLTTKMNELTMNWCSV 803 (826)
Q Consensus 778 ~~l~~lp~~l~~l~~L~~L~l~~c~~ 803 (826)
+.....|..+..+++|+.|++++|+-
T Consensus 298 ~l~~~~~~~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 298 QLGNEDMEVIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp CCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred cCCCcChhHhhccccCCEEEccCCcc
Confidence 76555666677899999999999973
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=2.4e-23 Score=232.57 Aligned_cols=306 Identities=17% Similarity=0.133 Sum_probs=210.7
Q ss_pred CCCcEEeccccccccccccccc-cccccCCCCccEEEccCCCCcccc-chhhcCCCCCcEEeccCCCCCcccchhhhccc
Q 003367 462 TCLRTLCLRCHERHFCLSIARL-PRNIKKLKHLRYLNLSNNDAIYEL-PEALCDLCNLQTLDVSNCGNLHALPQGIAKLI 539 (826)
Q Consensus 462 ~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l~~L~~L~Ls~~~~~~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~ 539 (826)
++|++|+|+ ++ .+..+ |..|+++++|++|+|++|.+.+.+ |..|.++++|++|++++|.+.+..|..+++++
T Consensus 30 ~~l~~L~Ls-----~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 103 (455)
T 3v47_A 30 AHVNYVDLS-----LN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA 103 (455)
T ss_dssp TTCCEEECC-----SS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT
T ss_pred CccCEEEec-----CC-ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcc
Confidence 789999999 45 44444 778999999999999999855565 56799999999999999997777799999999
Q ss_pred CCCeeeecCccccc-CCcc--CCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhc
Q 003367 540 NLRHLINEGTPLLY-LPKG--LERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKL 616 (826)
Q Consensus 540 ~L~~L~l~~~~l~~-lp~~--i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l 616 (826)
+|++|++++|.+.. +|.. ++++++|++|++.++......+ ...+..+.+|..+. +....+.. .....+
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~--L~~n~l~~------~~~~~l 174 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP-ASFFLNMRRFHVLD--LTFNKVKS------ICEEDL 174 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCC-CGGGGGCTTCCEEE--CTTCCBSC------CCTTTS
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCc-ccccCCCCcccEEe--CCCCcccc------cChhhh
Confidence 99999999999984 4444 8999999999998887633211 11134444443321 00001111 111112
Q ss_pred cCC--CcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCccc---------------------
Q 003367 617 ESK--KHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLM--------------------- 673 (826)
Q Consensus 617 ~~~--~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~--------------------- 673 (826)
..+ ..|+.|+++.+.+...............+..+++|++|++++|.+.+..|.++.
T Consensus 175 ~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 254 (455)
T 3v47_A 175 LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS 254 (455)
T ss_dssp GGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSC
T ss_pred hccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccc
Confidence 222 456666666665544332222222233344456777777777765443222221
Q ss_pred ------------------CccCCcEEEEecCCCCCCCC-CCCCCCccceeeccccccceEeCcccccCCCCccccCccCc
Q 003367 674 ------------------SLTELRMLNLQRCGKCEQLP-SLGRLPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSV 734 (826)
Q Consensus 674 ------------------~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 734 (826)
..++|+.|++++|.+.+.+| .++.+++|+.|+++++..-...+. .+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--------------~~~ 320 (455)
T 3v47_A 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN--------------AFW 320 (455)
T ss_dssp CTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT--------------TTT
T ss_pred ccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh--------------Hhc
Confidence 12689999999999888777 789999999999997652221111 134
Q ss_pred CCCccceeeccccccccccccccccccCcCCCCccceeeecCCCCCCCCCCCCcccCCcceEEEcccc
Q 003367 735 VFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKLKALPDHLLLTTKMNELTMNWCS 802 (826)
Q Consensus 735 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 802 (826)
.+++|++|++++| .+..+. +..+..+++|+.|+|++|......|..+..+++|++|++++|.
T Consensus 321 ~l~~L~~L~Ls~N-~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 321 GLTHLLKLNLSQN-FLGSID-----SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp TCTTCCEEECCSS-CCCEEC-----GGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcccCCEEECCCC-ccCCcC-----hhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 6899999999999 444442 2456789999999999986555557788899999999999985
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=1.1e-22 Score=233.08 Aligned_cols=344 Identities=20% Similarity=0.135 Sum_probs=209.8
Q ss_pred CcceEEEEEecCCCCccccCCcccchhhhchhhhccCCCCcEEeccccccccccccccc-cccccCCCCccEEEccCCCC
Q 003367 425 TKLRSLSIVHKSNSSTIFPGIRDSVADIALPSLFDRLTCLRTLCLRCHERHFCLSIARL-PRNIKKLKHLRYLNLSNNDA 503 (826)
Q Consensus 425 ~~lr~l~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l~~L~~L~Ls~~~~ 503 (826)
..++.|+++++.. ....|..|.++++|++|+|+ +| .+..+ |..|..+++|++|+|++|.
T Consensus 52 ~~L~~L~Ls~N~i-------------~~~~~~~~~~l~~L~~L~Ls-----~N-~l~~~~~~~~~~l~~L~~L~Ls~N~- 111 (562)
T 3a79_B 52 PRTKALSLSQNSI-------------SELRMPDISFLSELRVLRLS-----HN-RIRSLDFHVFLFNQDLEYLDVSHNR- 111 (562)
T ss_dssp TTCCEEECCSSCC-------------CCCCGGGTTTCTTCCEEECC-----SC-CCCEECTTTTTTCTTCCEEECTTSC-
T ss_pred CCcCEEECCCCCc-------------cccChhhhccCCCccEEECC-----CC-CCCcCCHHHhCCCCCCCEEECCCCc-
Confidence 5677777766622 22335788999999999999 45 45454 6778999999999999998
Q ss_pred ccccchhhcCCCCCcEEeccCCCCCc-ccchhhhcccCCCeeeecCcccccCCccCCCCCCC--CcCCceeeCc--ccCc
Q 003367 504 IYELPEALCDLCNLQTLDVSNCGNLH-ALPQGIAKLINLRHLINEGTPLLYLPKGLERLTCL--RTLSEFTVSD--IENV 578 (826)
Q Consensus 504 ~~~lp~~i~~L~~L~~L~L~~~~~~~-~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L--~~L~~~~~~~--~~~~ 578 (826)
+..+|.. .+++|++|++++|.+.+ .+|..++++++|++|++++|.+.. ..+..+++| ++|++..+.. ...
T Consensus 112 l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~- 186 (562)
T 3a79_B 112 LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSYHIKGG- 186 (562)
T ss_dssp CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSCCCCSS-
T ss_pred CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeeccccccccc-
Confidence 7788876 89999999999998554 346889999999999999998875 345566666 8888777654 211
Q ss_pred CcccCccccc-----------------------ccccCCCceEEccc--------------CCCCC-------------h
Q 003367 579 SKAGSLQCLQ-----------------------NLNHLQGSLVLTAL--------------GNVTD-------------V 608 (826)
Q Consensus 579 ~~~~~l~~L~-----------------------~L~~L~~~l~~~~l--------------~~~~~-------------~ 608 (826)
....+..+. .+..+. .+.+..- ..... .
T Consensus 187 -~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~ 264 (562)
T 3a79_B 187 -ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ-LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264 (562)
T ss_dssp -SCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEE-EEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH
T ss_pred -CcccccccCcceEEEEecCccchhhhhhhcccccceEE-EecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH
Confidence 111122111 000000 0000000 00000 0
Q ss_pred hhhhhhhccCCCcCCceeeEeecCCC-ccccc----------------------chHHHhhc------------------
Q 003367 609 GEAKSAKLESKKHLVCLRLEFIKLGR-VELVD----------------------KDNEVLEA------------------ 647 (826)
Q Consensus 609 ~~~~~~~l~~~~~L~~L~l~~~~l~~-~~~~~----------------------~~~~~~~~------------------ 647 (826)
............+|+.|+++.+.+.. ..... ........
T Consensus 265 ~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~ 344 (562)
T 3a79_B 265 CSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344 (562)
T ss_dssp HHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC
T ss_pred HHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc
Confidence 00000000112256666666655431 10000 00000000
Q ss_pred ----CCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCC--CC-CCCCCCccceeeccccccceEeCcccc
Q 003367 648 ----LQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQ--LP-SLGRLPSLESLVVEALSSVRRVGNEFL 720 (826)
Q Consensus 648 ----l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~--l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~ 720 (826)
...+++|++|++++|.+.+..|.++..+++|++|+|++|.+.+. +| .++.+++|+.|+++++.....++....
T Consensus 345 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 424 (562)
T 3a79_B 345 HMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424 (562)
T ss_dssp CCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC
T ss_pred cccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh
Confidence 14567899999999988887688888899999999999887752 23 578888999999886653221222111
Q ss_pred -cCCCC---cc---cc-CccCcCC-CccceeeccccccccccccccccccCcCCCCccceeeecCCCCCCCCCCC-Cccc
Q 003367 721 -GIESD---DI---SL-SSSSVVF-PKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKLKALPDH-LLLT 790 (826)
Q Consensus 721 -~~~~~---~~---~~-~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l 790 (826)
+.... .. .+ ......+ ++|++|++++| .++.++ ..+..+++|+.|++++| .++.+|.. +..+
T Consensus 425 ~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip------~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l 496 (562)
T 3a79_B 425 AWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIP------KDVTHLQALQELNVASN-QLKSVPDGVFDRL 496 (562)
T ss_dssp CCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCC------TTTTSSCCCSEEECCSS-CCCCCCTTSTTTC
T ss_pred cCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccC------hhhcCCCCCCEEECCCC-CCCCCCHHHHhcC
Confidence 10000 00 00 0001123 57788888777 455543 34457889999999985 46788887 7788
Q ss_pred CCcceEEEccccc
Q 003367 791 TKMNELTMNWCSV 803 (826)
Q Consensus 791 ~~L~~L~l~~c~~ 803 (826)
++|+.|++++||-
T Consensus 497 ~~L~~L~l~~N~~ 509 (562)
T 3a79_B 497 TSLQYIWLHDNPW 509 (562)
T ss_dssp TTCCCEECCSCCB
T ss_pred CCCCEEEecCCCc
Confidence 8999999988763
No 24
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=4.9e-23 Score=218.18 Aligned_cols=232 Identities=23% Similarity=0.290 Sum_probs=153.8
Q ss_pred cCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhccc
Q 003367 460 RLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLI 539 (826)
Q Consensus 460 ~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~ 539 (826)
...+++.|+|+ ++ .+..+|..++.+++|++|+|++|. +..+|..++++++|++|++++|.+. .+|..+++++
T Consensus 79 ~~~~l~~L~L~-----~n-~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~ 150 (328)
T 4fcg_A 79 TQPGRVALELR-----SV-PLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPLR-ALPASIASLN 150 (328)
T ss_dssp TSTTCCEEEEE-----SS-CCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCT
T ss_pred cccceeEEEcc-----CC-CchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCc
Confidence 34677777777 44 455677777777777777777777 4477777777777777777777643 6677777777
Q ss_pred CCCeeeecCccc-ccCCccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccC
Q 003367 540 NLRHLINEGTPL-LYLPKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLES 618 (826)
Q Consensus 540 ~L~~L~l~~~~l-~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~ 618 (826)
+|++|++++|++ ..+|..++... +
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~~------------------------------~------------------------- 175 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLASTD------------------------------A------------------------- 175 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEEC--------------------------------------------------------
T ss_pred CCCEEECCCCCCccccChhHhhcc------------------------------c-------------------------
Confidence 777777776433 24444322100 0
Q ss_pred CCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCCCCCCC
Q 003367 619 KKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLPSLGRL 698 (826)
Q Consensus 619 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~l 698 (826)
...+..+++|++|+|++|.+..+ |.++..+++|++|+|++|.+.+..+.++.+
T Consensus 176 --------------------------~~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~N~l~~l~~~l~~l 228 (328)
T 4fcg_A 176 --------------------------SGEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLSALGPAIHHL 228 (328)
T ss_dssp --------------------------CCCEEESTTCCEEEEEEECCCCC-CGGGGGCTTCCEEEEESSCCCCCCGGGGGC
T ss_pred --------------------------hhhhccCCCCCEEECcCCCcCcc-hHhhcCCCCCCEEEccCCCCCcCchhhccC
Confidence 00122345666777777766654 666777777777777777766544466677
Q ss_pred CccceeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCCC
Q 003367 699 PSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCH 778 (826)
Q Consensus 699 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 778 (826)
++|+.|++++|.....++.. ...+++|++|++++|..+..++ ..+..+++|+.|+|++|+
T Consensus 229 ~~L~~L~Ls~n~~~~~~p~~--------------~~~l~~L~~L~L~~n~~~~~~p------~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 229 PKLEELDLRGCTALRNYPPI--------------FGGRAPLKRLILKDCSNLLTLP------LDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp TTCCEEECTTCTTCCBCCCC--------------TTCCCCCCEEECTTCTTCCBCC------TTGGGCTTCCEEECTTCT
T ss_pred CCCCEEECcCCcchhhhHHH--------------hcCCCCCCEEECCCCCchhhcc------hhhhcCCCCCEEeCCCCC
Confidence 77777777765543332221 2357778888888776665553 346678899999999999
Q ss_pred CCCCCCCCCcccCCcceEEEccc
Q 003367 779 KLKALPDHLLLTTKMNELTMNWC 801 (826)
Q Consensus 779 ~l~~lp~~l~~l~~L~~L~l~~c 801 (826)
.++.+|..+..+++|+.+++...
T Consensus 289 ~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 289 NLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TCCCCCGGGGGSCTTCEEECCGG
T ss_pred chhhccHHHhhccCceEEeCCHH
Confidence 99999998888999998888743
No 25
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=6.3e-23 Score=237.96 Aligned_cols=313 Identities=16% Similarity=0.130 Sum_probs=191.6
Q ss_pred CCcEEeccccccccccccccc-cccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCC
Q 003367 463 CLRTLCLRCHERHFCLSIARL-PRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINL 541 (826)
Q Consensus 463 ~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L 541 (826)
.+++|+|+ ++ .+..+ |..|+++++|++|+|++|.+.+..|..|.++++|++|++++|.+.+..|..++++++|
T Consensus 34 ~l~~L~Ls-----~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 107 (606)
T 3t6q_A 34 STECLEFS-----FN-VLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL 107 (606)
T ss_dssp TCCEEECT-----TC-CCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred cCcEEEcc-----CC-ccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccc
Confidence 78999999 44 44555 6789999999999999999666678889999999999999999877788999999999
Q ss_pred CeeeecCcccccC-CccCCCCCCCCcCCceeeCcccC-cCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCC
Q 003367 542 RHLINEGTPLLYL-PKGLERLTCLRTLSEFTVSDIEN-VSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESK 619 (826)
Q Consensus 542 ~~L~l~~~~l~~l-p~~i~~L~~L~~L~~~~~~~~~~-~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~ 619 (826)
++|++++|.+..+ |..++++++|++|++.++..... .+....+..|+.|.--.+.+. ......+..+
T Consensus 108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-----------~~~~~~~~~l 176 (606)
T 3t6q_A 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-----------YLSKEDMSSL 176 (606)
T ss_dssp CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC-----------EECHHHHHTT
T ss_pred cEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc-----------ccChhhhhhh
Confidence 9999999999987 56799999999999988876431 122223344443321111110 0011112222
Q ss_pred CcCC--ceeeEeecCC----------------------------------------------------------------
Q 003367 620 KHLV--CLRLEFIKLG---------------------------------------------------------------- 633 (826)
Q Consensus 620 ~~L~--~L~l~~~~l~---------------------------------------------------------------- 633 (826)
.+|+ .|+++.+.+.
T Consensus 177 ~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L 256 (606)
T 3t6q_A 177 QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256 (606)
T ss_dssp TTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEE
T ss_pred cccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCce
Confidence 2222 2222222111
Q ss_pred ------CcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC-CCCCCCccceeec
Q 003367 634 ------RVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP-SLGRLPSLESLVV 706 (826)
Q Consensus 634 ------~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L 706 (826)
.+.+. ......+..+++|++|++++|.+..+ |.++..+++|++|++++|.+.+..| .++.+++|+.|++
T Consensus 257 ~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 257 ESINLQKHYFF---NISSNTFHCFSGLQELDLTATHLSEL-PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp EEEECTTCCCS---SCCTTTTTTCTTCSEEECTTSCCSCC-CSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred eEEEeecCccC---ccCHHHhccccCCCEEeccCCccCCC-ChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence 11100 00112255567777777777777766 6677777777777777777766555 6777777777777
Q ss_pred cccccceEeCcc-cccCCCC--------cc-cc---CccCcCCCccceeeccccccccccccccccccCcCCCCccceee
Q 003367 707 EALSSVRRVGNE-FLGIESD--------DI-SL---SSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLK 773 (826)
Q Consensus 707 ~~~~~l~~~~~~-~~~~~~~--------~~-~~---~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~ 773 (826)
+++.....++.. +...... .. .. +.....+++|++|++++|. +..+. +..+..+++|+.|+
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-----~~~~~~l~~L~~L~ 406 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLK-----TEAFKECPQLELLD 406 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEEC-----TTTTTTCTTCSEEE
T ss_pred CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCC-----HHHhcCCccCCeEE
Confidence 765432122211 1100000 00 00 1223445556666665552 22211 23455667777777
Q ss_pred ecCCCCCCCCCCC-CcccCCcceEEEcccc
Q 003367 774 LDGCHKLKALPDH-LLLTTKMNELTMNWCS 802 (826)
Q Consensus 774 l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~ 802 (826)
+++|......|.. +..+++|+.|++++|.
T Consensus 407 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436 (606)
T ss_dssp CTTCCEECCTTCCTTTTCTTCCEEECTTCC
T ss_pred CCCCcCCCcccchhhhCcccCCEEECCCCc
Confidence 7776544333333 5667777777777774
No 26
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=1.8e-23 Score=220.22 Aligned_cols=256 Identities=16% Similarity=0.160 Sum_probs=168.5
Q ss_pred CcceEEEEEecCCCCccccCCcccchhhhchhhhccCCCCcEEeccc-cccccccccccccccccCCCCccEEEccCCCC
Q 003367 425 TKLRSLSIVHKSNSSTIFPGIRDSVADIALPSLFDRLTCLRTLCLRC-HERHFCLSIARLPRNIKKLKHLRYLNLSNNDA 503 (826)
Q Consensus 425 ~~lr~l~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~-~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~ 503 (826)
..++.|+++++..... ..+|..|.++++|++|+|++ |. ..+.+|..|+.+++|++|+|++|.+
T Consensus 50 ~~l~~L~L~~~~l~~~-----------~~~~~~l~~l~~L~~L~L~~~n~-----l~~~~p~~l~~l~~L~~L~Ls~n~l 113 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKP-----------YPIPSSLANLPYLNFLYIGGINN-----LVGPIPPAIAKLTQLHYLYITHTNV 113 (313)
T ss_dssp CCEEEEEEECCCCSSC-----------EECCGGGGGCTTCSEEEEEEETT-----EESCCCGGGGGCTTCSEEEEEEECC
T ss_pred ceEEEEECCCCCccCC-----------cccChhHhCCCCCCeeeCCCCCc-----ccccCChhHhcCCCCCEEECcCCee
Confidence 4678888877633210 02467788888888888882 32 2335788888888888888888885
Q ss_pred ccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCcccc-cCCccCCCCC-CCCcCCceeeCcccCcCcc
Q 003367 504 IYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPLL-YLPKGLERLT-CLRTLSEFTVSDIENVSKA 581 (826)
Q Consensus 504 ~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~-~L~~L~~~~~~~~~~~~~~ 581 (826)
.+.+|..+.++++|++|++++|.+.+.+|..++.+++|++|++++|.+. .+|..+++++ +|++|++..+.....
T Consensus 114 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~---- 189 (313)
T 1ogq_A 114 SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK---- 189 (313)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE----
T ss_pred CCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc----
Confidence 5688888888888888888888877788888888888888888888887 7788887777 777776655433100
Q ss_pred cCcccccccccCCCceEEcccCCCCChhhhhhhhccCCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEec
Q 003367 582 GSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICD 661 (826)
Q Consensus 582 ~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~ 661 (826)
.+..+..++ |++|++++
T Consensus 190 --------------------------------------------------------------~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 190 --------------------------------------------------------------IPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp --------------------------------------------------------------CCGGGGGCC-CSEEECCS
T ss_pred --------------------------------------------------------------CChHHhCCc-ccEEECcC
Confidence 001111222 66666666
Q ss_pred cCCCCCCCCcccCccCCcEEEEecCCCCCCCCCCCCCCccceeeccccccceEeCcccccCCCCccccCccCcCCCccce
Q 003367 662 YKSKIISPSWLMSLTELRMLNLQRCGKCEQLPSLGRLPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKF 741 (826)
Q Consensus 662 ~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 741 (826)
|.+.+.+|..+..+++|+.|+|++|.+.+.+|.+..+++|++|+|+++.....++. .+..+++|++
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~--------------~l~~l~~L~~ 272 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ--------------GLTQLKFLHS 272 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCG--------------GGGGCTTCCE
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCCh--------------HHhcCcCCCE
Confidence 66665556667777777777777777666666666667777777764432111111 1234666777
Q ss_pred eeccccccccccccccccccCcCCCCccceeeecCCCCCCCCC
Q 003367 742 LEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKLKALP 784 (826)
Q Consensus 742 L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp 784 (826)
|++++|.....++. ...+++|+.|++++|+.+...|
T Consensus 273 L~Ls~N~l~~~ip~-------~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 273 LNVSFNNLCGEIPQ-------GGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp EECCSSEEEEECCC-------STTGGGSCGGGTCSSSEEESTT
T ss_pred EECcCCcccccCCC-------CccccccChHHhcCCCCccCCC
Confidence 77776643223322 2456777777777766555544
No 27
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=7.8e-23 Score=234.24 Aligned_cols=147 Identities=18% Similarity=0.218 Sum_probs=99.5
Q ss_pred cCCCCCCcCeEEEeccCCCCCCC--CcccCccCCcEEEEecCCCCCCCCCCCCCCccceeeccccccceEeCcccc-cCC
Q 003367 647 ALQPSPDLEKLTICDYKSKIISP--SWLMSLTELRMLNLQRCGKCEQLPSLGRLPSLESLVVEALSSVRRVGNEFL-GIE 723 (826)
Q Consensus 647 ~l~~~~~L~~L~L~~~~~~~~~p--~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~-~~~ 723 (826)
.+..+++|++|++++|.+..+++ ..+..+++|++|+|++|.+....+.++.+++|++|+++++. +..++..+. ...
T Consensus 356 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~ 434 (549)
T 2z81_A 356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLE 434 (549)
T ss_dssp CTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCS
T ss_pred hhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCC-cccccchhcCCce
Confidence 35667888888888888877622 45778889999999999887433377888889999988765 222221110 000
Q ss_pred ---CCccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCCCCCCCCCC-CCcccCCcceEEEc
Q 003367 724 ---SDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKLKALPD-HLLLTTKMNELTMN 799 (826)
Q Consensus 724 ---~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~ 799 (826)
-....+......+++|++|++++| .++.++. ...+++|+.|+|++|+ ++.+|. .+..+++|+.|+++
T Consensus 435 ~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~-------~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~ 505 (549)
T 2z81_A 435 VLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPD-------ASLFPVLLVMKISRNQ-LKSVPDGIFDRLTSLQKIWLH 505 (549)
T ss_dssp EEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC-------GGGCTTCCEEECCSSC-CCCCCTTGGGGCTTCCEEECC
T ss_pred EEECCCCChhhhcccCChhcEEECCCC-ccCcCCC-------cccCccCCEEecCCCc-cCCcCHHHHhcCcccCEEEec
Confidence 000011112246889999999998 5555542 3468999999999975 555554 47889999999999
Q ss_pred cccc
Q 003367 800 WCSV 803 (826)
Q Consensus 800 ~c~~ 803 (826)
+|+-
T Consensus 506 ~N~~ 509 (549)
T 2z81_A 506 TNPW 509 (549)
T ss_dssp SSCB
T ss_pred CCCc
Confidence 8873
No 28
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=1e-22 Score=234.60 Aligned_cols=134 Identities=20% Similarity=0.216 Sum_probs=77.1
Q ss_pred CCCCcCeEEEeccCCCCCCC-CcccCccCCcEEEEecCCCCCCCC-CCCCCCccceeeccccccceEeCcccccCCCCcc
Q 003367 650 PSPDLEKLTICDYKSKIISP-SWLMSLTELRMLNLQRCGKCEQLP-SLGRLPSLESLVVEALSSVRRVGNEFLGIESDDI 727 (826)
Q Consensus 650 ~~~~L~~L~L~~~~~~~~~p-~~l~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 727 (826)
.+++|++|++++|.+.+.+| ..+..+++|++|++++|.+.+..| .++.+++|+.|++++|.... .
T Consensus 394 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~ 460 (570)
T 2z63_A 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE-------------N 460 (570)
T ss_dssp TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG-------------G
T ss_pred ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcc-------------c
Confidence 34444455554444444322 234445555555555555444444 44455555555555433110 0
Q ss_pred ccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCCCCCCCCC-CCCcccCCcceEEEccccc
Q 003367 728 SLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKLKALP-DHLLLTTKMNELTMNWCSV 803 (826)
Q Consensus 728 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~ 803 (826)
.++.....+++|++|++++|. +..+. +..+..+++|+.|++++|. ++.+| ..+..+++|+.|++++|+-
T Consensus 461 ~~p~~~~~l~~L~~L~l~~n~-l~~~~-----~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 461 FLPDIFTELRNLTFLDLSQCQ-LEQLS-----PTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp EECSCCTTCTTCCEEECTTSC-CCEEC-----TTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cchhhhhcccCCCEEECCCCc-cccCC-----hhhhhcccCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCCcc
Confidence 012234567888888888883 44332 3456788999999999975 55555 4567889999999998763
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=1.2e-21 Score=217.07 Aligned_cols=305 Identities=20% Similarity=0.187 Sum_probs=214.8
Q ss_pred CCcceEEEEEecCCCCccccCCcccchhhhchhhhccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCC
Q 003367 424 ETKLRSLSIVHKSNSSTIFPGIRDSVADIALPSLFDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDA 503 (826)
Q Consensus 424 ~~~lr~l~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~ 503 (826)
...++.|+++.+.... +| .|..+++|++|+|+ +| .+..+| ++.+++|++|++++|.
T Consensus 41 l~~L~~L~Ls~n~l~~--------------~~-~l~~l~~L~~L~Ls-----~n-~l~~~~--~~~l~~L~~L~Ls~N~- 96 (457)
T 3bz5_A 41 LATLTSLDCHNSSITD--------------MT-GIEKLTGLTKLICT-----SN-NITTLD--LSQNTNLTYLACDSNK- 96 (457)
T ss_dssp HTTCCEEECCSSCCCC--------------CT-TGGGCTTCSEEECC-----SS-CCSCCC--CTTCTTCSEEECCSSC-
T ss_pred cCCCCEEEccCCCccc--------------Ch-hhcccCCCCEEEcc-----CC-cCCeEc--cccCCCCCEEECcCCC-
Confidence 3568888888773221 13 57889999999999 44 455555 8899999999999998
Q ss_pred ccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCcccccCCccCCCCCCCCcCCceeeCcccCcCcccC
Q 003367 504 IYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPLLYLPKGLERLTCLRTLSEFTVSDIENVSKAGS 583 (826)
Q Consensus 504 ~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~ 583 (826)
+..+| ++++++|++|++++|.+. .+| ++.+++|++|++++|.+..++ ++++++|++|++..+...... .
T Consensus 97 l~~~~--~~~l~~L~~L~L~~N~l~-~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~-~--- 165 (457)
T 3bz5_A 97 LTNLD--VTPLTKLTYLNCDTNKLT-KLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL-D--- 165 (457)
T ss_dssp CSCCC--CTTCTTCCEEECCSSCCS-CCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC-C---
T ss_pred Cceee--cCCCCcCCEEECCCCcCC-eec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc-c---
Confidence 66665 899999999999999854 465 899999999999999999875 889999999998887654433 2
Q ss_pred cccccccccCCCceEEcccCCCCChhhhhhhhccCCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccC
Q 003367 584 LQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYK 663 (826)
Q Consensus 584 l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 663 (826)
+..+..|..+. +.... +..+ .+..+++|+.|.++.+.+... .+..+++|+.|++++|.
T Consensus 166 ~~~l~~L~~L~--ls~n~---l~~l------~l~~l~~L~~L~l~~N~l~~~-----------~l~~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 166 VTPQTQLTTLD--CSFNK---ITEL------DVSQNKLLNRLNCDTNNITKL-----------DLNQNIQLTFLDCSSNK 223 (457)
T ss_dssp CTTCTTCCEEE--CCSSC---CCCC------CCTTCTTCCEEECCSSCCSCC-----------CCTTCTTCSEEECCSSC
T ss_pred cccCCcCCEEE--CCCCc---ccee------ccccCCCCCEEECcCCcCCee-----------ccccCCCCCEEECcCCc
Confidence 23333333221 10011 1111 156778899999988876532 26678999999999999
Q ss_pred CCCCCCCcccCccCCcEEEEecCCCCCCCCCCCCCCccceeeccccccceEe---CcccccCCCCccccCccCcCCCccc
Q 003367 664 SKIISPSWLMSLTELRMLNLQRCGKCEQLPSLGRLPSLESLVVEALSSVRRV---GNEFLGIESDDISLSSSSVVFPKLK 740 (826)
Q Consensus 664 ~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~L~ 740 (826)
+.++ | +..+++|++|++++|.+.+.. .+.+++|+.|+++.+. ++.+ .+.+.+..+ ...+++|+
T Consensus 224 l~~i-p--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~-L~~L~l~~n~~~~~~~--------~~~l~~L~ 289 (457)
T 3bz5_A 224 LTEI-D--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTD-LLEIDLTHNTQLIYFQ--------AEGCRKIK 289 (457)
T ss_dssp CSCC-C--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCC-CSCCCCTTCTTCCEEE--------CTTCTTCC
T ss_pred cccc-C--ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCC-CCEEECCCCccCCccc--------ccccccCC
Confidence 9996 6 788999999999999987643 4556666666655321 2211 111111111 24679999
Q ss_pred eeecccccccccccccccc--ccCcCCCCccceeeecCCCCCCCCCCCCcccCCcceEEEcccc
Q 003367 741 FLEFRDMDEWEEWDYVISG--QKDIKIMPRLHRLKLDGCHKLKALPDHLLLTTKMNELTMNWCS 802 (826)
Q Consensus 741 ~L~l~~~~~l~~~~~~~~~--~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 802 (826)
.|++++|..+..++..... .-.+..+++|+.|++++| .++.++ +..+++|+.|++++|.
T Consensus 290 ~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 290 ELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp CCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSSC
T ss_pred EEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCCC
Confidence 9999999777665531110 012456788999999985 466675 6788899999988764
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=1.1e-22 Score=222.01 Aligned_cols=286 Identities=18% Similarity=0.163 Sum_probs=217.2
Q ss_pred cCCCCcEEecccccccccccccccccc-ccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcc
Q 003367 460 RLTCLRTLCLRCHERHFCLSIARLPRN-IKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKL 538 (826)
Q Consensus 460 ~l~~Lr~L~L~~~~~~~~~~~~~lp~~-i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L 538 (826)
.++++++|+++ ++ .+..+|.. +..+++|++|+|++|.+....|..|..+++|++|++++|.+.+..|..++++
T Consensus 43 ~l~~l~~l~l~-----~~-~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 116 (390)
T 3o6n_A 43 TLNNQKIVTFK-----NS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 116 (390)
T ss_dssp GGCCCSEEEEE-----SC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccCCceEEEec-----CC-chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCC
Confidence 46899999998 55 67777765 6889999999999999444444589999999999999999776667789999
Q ss_pred cCCCeeeecCcccccCCcc-CCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhcc
Q 003367 539 INLRHLINEGTPLLYLPKG-LERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLE 617 (826)
Q Consensus 539 ~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~ 617 (826)
++|++|++++|.+..+|.. ++++++|++|++.++..... ....+..+.+|..|. +....+.. ..+.
T Consensus 117 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~--l~~n~l~~---------~~~~ 183 (390)
T 3o6n_A 117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI--EDDTFQATTSLQNLQ--LSSNRLTH---------VDLS 183 (390)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC--CTTTTSSCTTCCEEE--CCSSCCSB---------CCGG
T ss_pred CCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCcc--ChhhccCCCCCCEEE--CCCCcCCc---------cccc
Confidence 9999999999999999987 58999999999988766322 222334444443321 10011111 1245
Q ss_pred CCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCCCCCC
Q 003367 618 SKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLPSLGR 697 (826)
Q Consensus 618 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~ 697 (826)
.+++|+.|+++.+.+. .+..+++|++|++++|.+... |.. .+++|+.|++++|.+.+ .+.++.
T Consensus 184 ~l~~L~~L~l~~n~l~-------------~~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~-~~~l~~ 246 (390)
T 3o6n_A 184 LIPSLFHANVSYNLLS-------------TLAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTD-TAWLLN 246 (390)
T ss_dssp GCTTCSEEECCSSCCS-------------EEECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCC-CGGGGG
T ss_pred cccccceeeccccccc-------------ccCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCcc-cHHHcC
Confidence 6678888888877643 233567899999999999887 543 35899999999999875 477889
Q ss_pred CCccceeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCC
Q 003367 698 LPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGC 777 (826)
Q Consensus 698 l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c 777 (826)
+++|+.|+++++..-...+.. +..+++|++|++++| .+..++. .+..+++|+.|++++|
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~--------------~~~l~~L~~L~L~~n-~l~~~~~------~~~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEKIMYHP--------------FVKMQRLERLYISNN-RLVALNL------YGQPIPTLKVLDLSHN 305 (390)
T ss_dssp CTTCSEEECCSSCCCEEESGG--------------GTTCSSCCEEECCSS-CCCEEEC------SSSCCTTCCEEECCSS
T ss_pred CCCccEEECCCCcCCCcChhH--------------ccccccCCEEECCCC-cCcccCc------ccCCCCCCCEEECCCC
Confidence 999999999976532222221 346899999999998 4555533 4457999999999997
Q ss_pred CCCCCCCCCCcccCCcceEEEccccc
Q 003367 778 HKLKALPDHLLLTTKMNELTMNWCSV 803 (826)
Q Consensus 778 ~~l~~lp~~l~~l~~L~~L~l~~c~~ 803 (826)
.+..+|..+..+++|+.|++++|+-
T Consensus 306 -~l~~~~~~~~~l~~L~~L~L~~N~i 330 (390)
T 3o6n_A 306 -HLLHVERNQPQFDRLENLYLDHNSI 330 (390)
T ss_dssp -CCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred -cceecCccccccCcCCEEECCCCcc
Confidence 5778998888899999999999973
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=3.2e-22 Score=223.60 Aligned_cols=284 Identities=23% Similarity=0.244 Sum_probs=148.4
Q ss_pred hccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhc
Q 003367 458 FDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAK 537 (826)
Q Consensus 458 ~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~ 537 (826)
|.++++|++|+++ +| .+..++. +..+++|++|++++|. +..+|. +.++++|++|++++|. +..+| .++.
T Consensus 86 ~~~l~~L~~L~l~-----~n-~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~ 154 (466)
T 1o6v_A 86 LKNLTKLVDILMN-----NN-QIADITP-LANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNT-ISDIS-ALSG 154 (466)
T ss_dssp GTTCTTCCEEECC-----SS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEE-ECCCG-GGTT
T ss_pred hhccccCCEEECC-----CC-ccccChh-hcCCCCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCCc-cCCCh-hhcc
Confidence 5555666666665 33 3333333 5556666666666655 444443 5556666666666555 22233 2444
Q ss_pred ccCCCeeeecCcccccCCccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCC---C---------------ceEE
Q 003367 538 LINLRHLINEGTPLLYLPKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQ---G---------------SLVL 599 (826)
Q Consensus 538 L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~---~---------------~l~~ 599 (826)
+++|++|+++ +.+..++. ++++++|+.|++.++... .. ..+..+.+|..+. + .+.+
T Consensus 155 l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~l~-~~---~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l 228 (466)
T 1o6v_A 155 LTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNKVS-DI---SVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 228 (466)
T ss_dssp CTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSCCC-CC---GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEEC
T ss_pred CCcccEeecC-CcccCchh-hccCCCCCEEECcCCcCC-CC---hhhccCCCCCEEEecCCcccccccccccCCCCEEEC
Confidence 4444444443 22222222 444555555554444321 11 1122222221110 0 0000
Q ss_pred cccCCCCChhhhhhhhccCCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCc
Q 003367 600 TALGNVTDVGEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELR 679 (826)
Q Consensus 600 ~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~ 679 (826)
... .+.. ...+..+++|+.|+++.+.+.... .+..+++|++|++++|.+.+. |. +..+++|+
T Consensus 229 ~~n-~l~~-----~~~l~~l~~L~~L~l~~n~l~~~~----------~~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~ 290 (466)
T 1o6v_A 229 NGN-QLKD-----IGTLASLTNLTDLDLANNQISNLA----------PLSGLTKLTELKLGANQISNI-SP-LAGLTALT 290 (466)
T ss_dssp CSS-CCCC-----CGGGGGCTTCSEEECCSSCCCCCG----------GGTTCTTCSEEECCSSCCCCC-GG-GTTCTTCS
T ss_pred CCC-Cccc-----chhhhcCCCCCEEECCCCccccch----------hhhcCCCCCEEECCCCccCcc-cc-ccCCCccC
Confidence 000 0000 012444555566665555433211 144566677777777766665 32 66667777
Q ss_pred EEEEecCCCCCCCCCCCCCCccceeeccccccceEeCcccccCCCCccccCccCcCCCccceeecccccccccccccccc
Q 003367 680 MLNLQRCGKCEQLPSLGRLPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISG 759 (826)
Q Consensus 680 ~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 759 (826)
.|+|++|.+.+. +.++.+++|+.|++++|. +.+..+ ...+++|+.|++++| .+...
T Consensus 291 ~L~L~~n~l~~~-~~~~~l~~L~~L~L~~n~--------l~~~~~--------~~~l~~L~~L~l~~n-~l~~~------ 346 (466)
T 1o6v_A 291 NLELNENQLEDI-SPISNLKNLTYLTLYFNN--------ISDISP--------VSSLTKLQRLFFYNN-KVSDV------ 346 (466)
T ss_dssp EEECCSSCCSCC-GGGGGCTTCSEEECCSSC--------CSCCGG--------GGGCTTCCEEECCSS-CCCCC------
T ss_pred eEEcCCCcccCc-hhhcCCCCCCEEECcCCc--------CCCchh--------hccCccCCEeECCCC-ccCCc------
Confidence 777777766543 335666777777776543 112111 246788888888888 34433
Q ss_pred ccCcCCCCccceeeecCCCCCCCCCCCCcccCCcceEEEccccc
Q 003367 760 QKDIKIMPRLHRLKLDGCHKLKALPDHLLLTTKMNELTMNWCSV 803 (826)
Q Consensus 760 ~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 803 (826)
..+..+++|+.|++++|+... ++. +..+++|+.|++++|+-
T Consensus 347 -~~l~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 347 -SSLANLTNINWLSAGHNQISD-LTP-LANLTRITQLGLNDQAW 387 (466)
T ss_dssp -GGGTTCTTCCEEECCSSCCCB-CGG-GTTCTTCCEEECCCEEE
T ss_pred -hhhccCCCCCEEeCCCCccCc-cch-hhcCCCCCEEeccCCcc
Confidence 245678999999999876444 443 67888999999998863
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=5.4e-22 Score=221.73 Aligned_cols=308 Identities=19% Similarity=0.247 Sum_probs=191.0
Q ss_pred CcceEEEEEecCCCCccccCCcccchhhhchhhhccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCc
Q 003367 425 TKLRSLSIVHKSNSSTIFPGIRDSVADIALPSLFDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAI 504 (826)
Q Consensus 425 ~~lr~l~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~ 504 (826)
..++.+++..+.... +| .+..+++|++|+|+ +| .+..+|. +..+++|++|++++|. +
T Consensus 46 ~~l~~L~l~~~~i~~--------------l~-~~~~l~~L~~L~Ls-----~n-~l~~~~~-~~~l~~L~~L~l~~n~-l 102 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS--------------ID-GVEYLNNLTQINFS-----NN-QLTDITP-LKNLTKLVDILMNNNQ-I 102 (466)
T ss_dssp HTCCEEECCSSCCCC--------------CT-TGGGCTTCCEEECC-----SS-CCCCCGG-GTTCTTCCEEECCSSC-C
T ss_pred ccccEEecCCCCCcc--------------Cc-chhhhcCCCEEECC-----CC-ccCCchh-hhccccCCEEECCCCc-c
Confidence 357778776652211 23 37789999999999 55 5666665 8999999999999998 6
Q ss_pred cccchhhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCcccccCCccCCCCCCCCcCCceeeCcccCcCcccCc
Q 003367 505 YELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPLLYLPKGLERLTCLRTLSEFTVSDIENVSKAGSL 584 (826)
Q Consensus 505 ~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l 584 (826)
..+|. ++++++|++|++++|. +..+|. +.++++|++|++++|.+..+| .++++++|+.|++.. .. ..... +
T Consensus 103 ~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~-~~-~~~~~---~ 173 (466)
T 1o6v_A 103 ADITP-LANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN-QV-TDLKP---L 173 (466)
T ss_dssp CCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE-SC-CCCGG---G
T ss_pred ccChh-hcCCCCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC-cc-cCchh---h
Confidence 67776 9999999999999998 455554 999999999999999998876 489999999998753 22 12222 3
Q ss_pred ccccccccCCCceEEcccCCCCChhhhhhhhccCCCcCCceeeEeecCCCccccc------------chHHHhhcCCCCC
Q 003367 585 QCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKHLVCLRLEFIKLGRVELVD------------KDNEVLEALQPSP 652 (826)
Q Consensus 585 ~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~------------~~~~~~~~l~~~~ 652 (826)
..+.+|..+. +... .+... ..+..+++|+.|+++.+.+....... ........+..++
T Consensus 174 ~~l~~L~~L~----l~~n-~l~~~-----~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~ 243 (466)
T 1o6v_A 174 ANLTTLERLD----ISSN-KVSDI-----SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLT 243 (466)
T ss_dssp TTCTTCCEEE----CCSS-CCCCC-----GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred ccCCCCCEEE----CcCC-cCCCC-----hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCC
Confidence 3333333221 1110 01111 12445556666666555433211000 0000001233445
Q ss_pred CcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCCCCCCCCccceeeccccccceEeCcccccCCCCccccCcc
Q 003367 653 DLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLPSLGRLPSLESLVVEALSSVRRVGNEFLGIESDDISLSSS 732 (826)
Q Consensus 653 ~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~ 732 (826)
+|++|++++|.+.+..| +..+++|++|++++|.+.+.. .+..+++|+.|+++++. +.+..+
T Consensus 244 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~--------l~~~~~-------- 304 (466)
T 1o6v_A 244 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS-PLAGLTALTNLELNENQ--------LEDISP-------- 304 (466)
T ss_dssp TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSC--------CSCCGG--------
T ss_pred CCCEEECCCCccccchh--hhcCCCCCEEECCCCccCccc-cccCCCccCeEEcCCCc--------ccCchh--------
Confidence 55555555555555422 455555555555555554322 25555556666555432 111111
Q ss_pred CcCCCccceeeccccccccccccccccccCcCCCCccceeeecCCCCCCCCCCCCcccCCcceEEEccccc
Q 003367 733 SVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKLKALPDHLLLTTKMNELTMNWCSV 803 (826)
Q Consensus 733 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 803 (826)
...+++|+.|++++|. +..+. .+..+++|+.|++++|+ +..++ .+..+++|+.|++++|+.
T Consensus 305 ~~~l~~L~~L~L~~n~-l~~~~-------~~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 305 ISNLKNLTYLTLYFNN-ISDIS-------PVSSLTKLQRLFFYNNK-VSDVS-SLANLTNINWLSAGHNQI 365 (466)
T ss_dssp GGGCTTCSEEECCSSC-CSCCG-------GGGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSSCC
T ss_pred hcCCCCCCEEECcCCc-CCCch-------hhccCccCCEeECCCCc-cCCch-hhccCCCCCEEeCCCCcc
Confidence 3467888888888883 43332 24578899999999874 66664 567788999999998863
No 33
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=1.3e-23 Score=221.33 Aligned_cols=252 Identities=15% Similarity=0.113 Sum_probs=200.6
Q ss_pred CCCcEEeccccccccccccccccccccCCCCccEEEccC-CCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccC
Q 003367 462 TCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSN-NDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLIN 540 (826)
Q Consensus 462 ~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~-~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~ 540 (826)
.+++.|+|++|.+.+ ...+|..++.+++|++|+|++ |.+.+.+|..|+++++|++|++++|.+.+.+|..+.++++
T Consensus 50 ~~l~~L~L~~~~l~~---~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPK---PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSS---CEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCccC---CcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 578999999433221 015788999999999999995 8867789999999999999999999977789999999999
Q ss_pred CCeeeecCcccc-cCCccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCC
Q 003367 541 LRHLINEGTPLL-YLPKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESK 619 (826)
Q Consensus 541 L~~L~l~~~~l~-~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~ 619 (826)
|++|++++|.+. .+|..++++++|++|++..+.....
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~------------------------------------------ 164 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA------------------------------------------ 164 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEE------------------------------------------
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCc------------------------------------------
Confidence 999999999998 7888899999999887766543100
Q ss_pred CcCCceeeEeecCCCcccccchHHHhhcCCCCC-CcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC-CCCC
Q 003367 620 KHLVCLRLEFIKLGRVELVDKDNEVLEALQPSP-DLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP-SLGR 697 (826)
Q Consensus 620 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~-~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~ 697 (826)
.+..+..++ +|++|++++|.+.+..|..+..++ |++|+|++|.+.+.+| .++.
T Consensus 165 ------------------------~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~ 219 (313)
T 1ogq_A 165 ------------------------IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS 219 (313)
T ss_dssp ------------------------CCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCT
T ss_pred ------------------------CCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhc
Confidence 111233344 899999999999877799999887 9999999999987777 7899
Q ss_pred CCccceeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCC
Q 003367 698 LPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGC 777 (826)
Q Consensus 698 l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c 777 (826)
+++|+.|+++++.. .+..+ ....+++|++|++++|.....+ +..+..+++|+.|+|++|
T Consensus 220 l~~L~~L~L~~N~l--------~~~~~-------~~~~l~~L~~L~Ls~N~l~~~~------p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 220 DKNTQKIHLAKNSL--------AFDLG-------KVGLSKNLNGLDLRNNRIYGTL------PQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp TSCCSEEECCSSEE--------CCBGG-------GCCCCTTCCEEECCSSCCEECC------CGGGGGCTTCCEEECCSS
T ss_pred CCCCCEEECCCCce--------eeecC-------cccccCCCCEEECcCCcccCcC------ChHHhcCcCCCEEECcCC
Confidence 99999999996542 21111 1246899999999999533243 345678999999999998
Q ss_pred CCCCCCCCCCcccCCcceEEEccccchH
Q 003367 778 HKLKALPDHLLLTTKMNELTMNWCSVLK 805 (826)
Q Consensus 778 ~~l~~lp~~l~~l~~L~~L~l~~c~~l~ 805 (826)
+....+|.. ..+++|+.|++.+|+.+.
T Consensus 279 ~l~~~ip~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 279 NLCGEIPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp EEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred cccccCCCC-ccccccChHHhcCCCCcc
Confidence 766688875 788999999999998654
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=5.7e-22 Score=222.60 Aligned_cols=273 Identities=19% Similarity=0.120 Sum_probs=207.9
Q ss_pred CCCcEEeccccccccccccccc-cccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccC
Q 003367 462 TCLRTLCLRCHERHFCLSIARL-PRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLIN 540 (826)
Q Consensus 462 ~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~ 540 (826)
+++++|+|+ ++ .+..+ |..|.++++|++|+|++|.+....|..|.++++|++|+|++|.+....+..|.++++
T Consensus 32 ~~l~~L~L~-----~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 105 (477)
T 2id5_A 32 TETRLLDLG-----KN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN 105 (477)
T ss_dssp TTCSEEECC-----SS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTT
T ss_pred CCCcEEECC-----CC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCC
Confidence 578999998 44 44444 567889999999999999855555788999999999999999844433345788999
Q ss_pred CCeeeecCcccccC-CccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCC
Q 003367 541 LRHLINEGTPLLYL-PKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESK 619 (826)
Q Consensus 541 L~~L~l~~~~l~~l-p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~ 619 (826)
|++|++++|.+..+ |..+.++++|++|++..+..... ....+..+
T Consensus 106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------------------~~~~~~~l 151 (477)
T 2id5_A 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI----------------------------------SHRAFSGL 151 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE----------------------------------CTTSSTTC
T ss_pred CCEEECCCCccccCChhHccccccCCEEECCCCcccee----------------------------------ChhhccCC
Confidence 99999999988865 45688889999887766543110 01224456
Q ss_pred CcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC-CCCCC
Q 003367 620 KHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP-SLGRL 698 (826)
Q Consensus 620 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~l 698 (826)
++|+.|+++.+.+.... ...+..+++|+.|+|++|.+..+.+..+..+++|++|+|++|...+.+| .....
T Consensus 152 ~~L~~L~l~~n~l~~~~--------~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 223 (477)
T 2id5_A 152 NSLEQLTLEKCNLTSIP--------TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223 (477)
T ss_dssp TTCCEEEEESCCCSSCC--------HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTT
T ss_pred CCCCEEECCCCcCcccC--------hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccC
Confidence 78888999888765332 2346678999999999999999878889999999999999999888776 55566
Q ss_pred CccceeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCCC
Q 003367 699 PSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCH 778 (826)
Q Consensus 699 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 778 (826)
.+|+.|+++++. +..++.. .+..+++|+.|++++|. +..+. +..+..+++|+.|+|++|.
T Consensus 224 ~~L~~L~l~~n~-l~~~~~~-------------~~~~l~~L~~L~Ls~n~-l~~~~-----~~~~~~l~~L~~L~L~~n~ 283 (477)
T 2id5_A 224 LNLTSLSITHCN-LTAVPYL-------------AVRHLVYLRFLNLSYNP-ISTIE-----GSMLHELLRLQEIQLVGGQ 283 (477)
T ss_dssp CCCSEEEEESSC-CCSCCHH-------------HHTTCTTCCEEECCSSC-CCEEC-----TTSCTTCTTCCEEECCSSC
T ss_pred ccccEEECcCCc-ccccCHH-------------HhcCccccCeeECCCCc-CCccC-----hhhccccccCCEEECCCCc
Confidence 799999999764 2222211 12468999999999994 55443 2456789999999999976
Q ss_pred CCCCCCCCCcccCCcceEEEcccc
Q 003367 779 KLKALPDHLLLTTKMNELTMNWCS 802 (826)
Q Consensus 779 ~l~~lp~~l~~l~~L~~L~l~~c~ 802 (826)
.....|..+..+++|+.|++++|.
T Consensus 284 l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 284 LAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp CSEECTTTBTTCTTCCEEECCSSC
T ss_pred cceECHHHhcCcccCCEEECCCCc
Confidence 555557778889999999999984
No 35
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=3.6e-22 Score=211.53 Aligned_cols=112 Identities=28% Similarity=0.466 Sum_probs=90.4
Q ss_pred hchhhhccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccc
Q 003367 453 ALPSLFDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALP 532 (826)
Q Consensus 453 ~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp 532 (826)
.+|..+.++++|++|+|+ +| .+..+|..++.+++|++|+|++|. +..+|..++++++|++|++++|...+.+|
T Consensus 95 ~lp~~l~~l~~L~~L~L~-----~n-~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~n~~~~~~p 167 (328)
T 4fcg_A 95 QFPDQAFRLSHLQHMTID-----AA-GLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELP 167 (328)
T ss_dssp SCCSCGGGGTTCSEEEEE-----SS-CCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEEEEETTCCCCC
T ss_pred hcChhhhhCCCCCEEECC-----CC-CccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEECCCCCCccccC
Confidence 357778889999999999 55 566889999999999999999999 66999999999999999999999899999
Q ss_pred hhhhc---------ccCCCeeeecCcccccCCccCCCCCCCCcCCcee
Q 003367 533 QGIAK---------LINLRHLINEGTPLLYLPKGLERLTCLRTLSEFT 571 (826)
Q Consensus 533 ~~i~~---------L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~ 571 (826)
..++. +++|++|++++|.+..+|..++++++|++|++.+
T Consensus 168 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~ 215 (328)
T 4fcg_A 168 EPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRN 215 (328)
T ss_dssp SCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEES
T ss_pred hhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccC
Confidence 87765 6777777777766666665555555555554433
No 36
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=3.4e-22 Score=227.18 Aligned_cols=320 Identities=19% Similarity=0.159 Sum_probs=194.7
Q ss_pred chhhhccCCCCcEEecccccccccccccccc-ccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccc
Q 003367 454 LPSLFDRLTCLRTLCLRCHERHFCLSIARLP-RNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALP 532 (826)
Q Consensus 454 ~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp 532 (826)
+|..+. ++|++|+|+ +| .+..++ ..|..+++|++|+|++|.+.+..|..|+++++|++|++++|. +..+|
T Consensus 15 ip~~~~--~~L~~L~Ls-----~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp 85 (520)
T 2z7x_B 15 VPKDLS--QKTTILNIS-----QN-YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKIS 85 (520)
T ss_dssp CCCSCC--TTCSEEECC-----SS-CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEE
T ss_pred cccccc--ccccEEECC-----CC-cccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-eeecC
Confidence 455444 899999999 55 455554 689999999999999999555558899999999999999998 45788
Q ss_pred hhhhcccCCCeeeecCccccc--CCccCCCCCCCCcCCceeeCcccCcCcccCccccccc--ccCCCceEEc--------
Q 003367 533 QGIAKLINLRHLINEGTPLLY--LPKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNL--NHLQGSLVLT-------- 600 (826)
Q Consensus 533 ~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L--~~L~~~l~~~-------- 600 (826)
.. .+++|++|++++|.+.. +|..++++++|++|++.++.... ..+..+..| ..+. +...
T Consensus 86 ~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~-----~~~~~l~~L~L~~L~--l~~n~l~~~~~~ 156 (520)
T 2z7x_B 86 CH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-----SSVLPIAHLNISKVL--LVLGETYGEKED 156 (520)
T ss_dssp CC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG-----GGGGGGTTSCEEEEE--EEECTTTTSSCC
T ss_pred cc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch-----hhccccccceeeEEE--eecccccccccc
Confidence 76 89999999999999985 57889999999999999887632 222333333 2111 1110
Q ss_pred --ccCCCC--------------------------Ch----------------hhhhhhhccCCCcCCceeeEeecCCCcc
Q 003367 601 --ALGNVT--------------------------DV----------------GEAKSAKLESKKHLVCLRLEFIKLGRVE 636 (826)
Q Consensus 601 --~l~~~~--------------------------~~----------------~~~~~~~l~~~~~L~~L~l~~~~l~~~~ 636 (826)
.+..+. .+ .......+..+++|+.|.++.+.+....
T Consensus 157 ~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 236 (520)
T 2z7x_B 157 PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS 236 (520)
T ss_dssp TTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHH
T ss_pred cccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHH
Confidence 011100 00 0001113455566666666665543221
Q ss_pred ccc-------------------chHHHhhcC-----CCCCCcCeEEEeccCCCCCCC-C---------------------
Q 003367 637 LVD-------------------KDNEVLEAL-----QPSPDLEKLTICDYKSKIISP-S--------------------- 670 (826)
Q Consensus 637 ~~~-------------------~~~~~~~~l-----~~~~~L~~L~L~~~~~~~~~p-~--------------------- 670 (826)
... ..+..+..+ ..+++|+.+++++|.+ .+ | .
T Consensus 237 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~-p~~~~~~~~~~~~L~~L~l~~n~l 314 (520)
T 2z7x_B 237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GF-PQSYIYEIFSNMNIKNFTVSGTRM 314 (520)
T ss_dssp HHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CS-CTHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ec-chhhhhcccccCceeEEEcCCCcc
Confidence 100 001122222 2333333333333333 11 1 0
Q ss_pred ----cccCccCCcEEEEecCCCCCCCC-CCCCCCccceeeccccccce--EeCcccccCCC--------Cccc--cCc-c
Q 003367 671 ----WLMSLTELRMLNLQRCGKCEQLP-SLGRLPSLESLVVEALSSVR--RVGNEFLGIES--------DDIS--LSS-S 732 (826)
Q Consensus 671 ----~l~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~--~~~~~~~~~~~--------~~~~--~~~-~ 732 (826)
....+++|++|++++|.+.+.+| .++.+++|++|+++++..-. .++..+..... .... ++. .
T Consensus 315 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~ 394 (520)
T 2z7x_B 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394 (520)
T ss_dssp CCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS
T ss_pred ccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch
Confidence 01678899999999999988666 88999999999999765221 11111110000 0000 110 1
Q ss_pred CcCCCccceeeccccccccccccccccccCcCCCCccceeeecCCCCCCCCCCCCcccCCcceEEEcccc
Q 003367 733 SVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKLKALPDHLLLTTKMNELTMNWCS 802 (826)
Q Consensus 733 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 802 (826)
...+++|++|++++|......+ ..+ .++|+.|++++| .++.+|..+..+++|++|++++|.
T Consensus 395 ~~~l~~L~~L~Ls~N~l~~~~~------~~l--~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSNILTDTIF------RCL--PPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp CCCCTTCCEEECCSSCCCGGGG------GSC--CTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC
T ss_pred hccCccCCEEECcCCCCCcchh------hhh--cccCCEEECCCC-cccccchhhhcCCCCCEEECCCCc
Confidence 2344556666665553212111 111 168888888886 466888888888999999999884
No 37
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=6e-22 Score=232.93 Aligned_cols=328 Identities=17% Similarity=0.144 Sum_probs=178.5
Q ss_pred CCcceEEEEEecCCCCccccCCcccchhhhchhhhccCCCCcEEecccccccccccccc-ccccccCCCCccEEEccCCC
Q 003367 424 ETKLRSLSIVHKSNSSTIFPGIRDSVADIALPSLFDRLTCLRTLCLRCHERHFCLSIAR-LPRNIKKLKHLRYLNLSNND 502 (826)
Q Consensus 424 ~~~lr~l~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~-lp~~i~~l~~L~~L~Ls~~~ 502 (826)
+..+++|+++++... .+.+..|.++++|++|+|+ ++ .+.. .|..++++++|++|+|++|.
T Consensus 24 ~~~l~~L~Ls~n~l~-------------~~~~~~~~~l~~L~~L~Ls-----~n-~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 24 PTNITVLNLTHNQLR-------------RLPAANFTRYSQLTSLDVG-----FN-TISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp CTTCSEEECCSSCCC-------------CCCGGGGGGGTTCSEEECC-----SS-CCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred CCCCcEEECCCCCCC-------------CcCHHHHhCCCcCcEEECC-----CC-ccCccCHHHHhcccCcCEEECCCCc
Confidence 467888888777322 2235568888888888888 44 3333 36667888888888888887
Q ss_pred Cccccch-hhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCcccccC-CccCCCCCCCCcCCceeeCcccCcCc
Q 003367 503 AIYELPE-ALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPLLYL-PKGLERLTCLRTLSEFTVSDIENVSK 580 (826)
Q Consensus 503 ~~~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~~~~~~~~~~~~~ 580 (826)
+..+|. .|+++++|++|++++|.+.+..|..|+++++|++|++++|.+... |..++++++|++|++..+......+.
T Consensus 85 -l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 163 (680)
T 1ziw_A 85 -LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163 (680)
T ss_dssp -CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred -cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHH
Confidence 666665 588888888888888886555556788888888888888887755 44577888888888777654221111
Q ss_pred c---cCcccccccccCCCceEEcccCCCCChhhhhhhhccCC---------------------------CcCCceeeEee
Q 003367 581 A---GSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESK---------------------------KHLVCLRLEFI 630 (826)
Q Consensus 581 ~---~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~---------------------------~~L~~L~l~~~ 630 (826)
. .....|+.|.--.+. + . ......+..+ .+|+.|+++.+
T Consensus 164 ~~~~~~~~~L~~L~L~~n~-----l---~---~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n 232 (680)
T 1ziw_A 164 ELDIFANSSLKKLELSSNQ-----I---K---EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232 (680)
T ss_dssp HHGGGTTCEESEEECTTCC-----C---C---CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTS
T ss_pred HhhccccccccEEECCCCc-----c---c---ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCC
Confidence 0 011222222211100 0 0 0111122233 34444444443
Q ss_pred cCCCcccccchHHHhhcCCCC--CCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC-CCCCCCccceeecc
Q 003367 631 KLGRVELVDKDNEVLEALQPS--PDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP-SLGRLPSLESLVVE 707 (826)
Q Consensus 631 ~l~~~~~~~~~~~~~~~l~~~--~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~ 707 (826)
.+.... +..+..+ ++|++|++++|.+.+.+|.++..+++|++|+|++|.+.+..| .++.+++|+.|+++
T Consensus 233 ~l~~~~--------~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 304 (680)
T 1ziw_A 233 QLSTTS--------NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304 (680)
T ss_dssp CCCEEC--------TTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECT
T ss_pred cccccC--------hhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEecc
Confidence 322111 1112122 236666666666655555556666666666666666555444 55566666666665
Q ss_pred ccccceEeCc-ccccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCCCC-CCCCCC
Q 003367 708 ALSSVRRVGN-EFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHK-LKALPD 785 (826)
Q Consensus 708 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~-l~~lp~ 785 (826)
++..-..+.. .+.... ......+++|++|++++|. +..+. +..+..+++|+.|++++|.. +..++.
T Consensus 305 ~~~~~~~~~~~~lp~i~------~~~~~~l~~L~~L~l~~n~-l~~~~-----~~~~~~l~~L~~L~Ls~n~~~~~~l~~ 372 (680)
T 1ziw_A 305 RSFTKQSISLASLPKID------DFSFQWLKCLEHLNMEDND-IPGIK-----SNMFTGLINLKYLSLSNSFTSLRTLTN 372 (680)
T ss_dssp TCBCCC------CCEEC------TTTTTTCTTCCEEECCSCC-BCCCC-----TTTTTTCTTCCEEECTTCBSCCCEECT
T ss_pred chhhhcccccccccccC------hhhcccCCCCCEEECCCCc-cCCCC-----hhHhccccCCcEEECCCCchhhhhcch
Confidence 4221000000 000000 0012356677777777663 33221 23455667777777776542 333332
Q ss_pred C-Ccc--cCCcceEEEcccc
Q 003367 786 H-LLL--TTKMNELTMNWCS 802 (826)
Q Consensus 786 ~-l~~--l~~L~~L~l~~c~ 802 (826)
. +.. .++|+.|++++|.
T Consensus 373 ~~f~~~~~~~L~~L~L~~n~ 392 (680)
T 1ziw_A 373 ETFVSLAHSPLHILNLTKNK 392 (680)
T ss_dssp TTTGGGTTSCCCEEECTTSC
T ss_pred hhhcccccCcCceEECCCCC
Confidence 2 111 2467777777664
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=3.4e-22 Score=230.29 Aligned_cols=286 Identities=18% Similarity=0.177 Sum_probs=217.1
Q ss_pred cCCCCcEEecccccccccccccccccc-ccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcc
Q 003367 460 RLTCLRTLCLRCHERHFCLSIARLPRN-IKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKL 538 (826)
Q Consensus 460 ~l~~Lr~L~L~~~~~~~~~~~~~lp~~-i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L 538 (826)
.+.++++|+++ ++ .+..+|.. +..+++|++|+|++|.+.+..|..|+.+++|++|+|++|.+.+..|..|+++
T Consensus 49 ~l~~l~~l~l~-----~~-~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 122 (597)
T 3oja_B 49 TLNNQKIVTFK-----NS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122 (597)
T ss_dssp GGCCCSEEEES-----SC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCCCceEEEee-----CC-CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence 46789999998 55 66777765 6789999999999999544455689999999999999999777677778999
Q ss_pred cCCCeeeecCcccccCCcc-CCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhcc
Q 003367 539 INLRHLINEGTPLLYLPKG-LERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLE 617 (826)
Q Consensus 539 ~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~ 617 (826)
++|++|++++|.+..+|.. ++++++|++|++.++..... ....+..+.+|..|. +..- .+.. ..+.
T Consensus 123 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~----L~~N-~l~~------~~~~ 189 (597)
T 3oja_B 123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI--EDDTFQATTSLQNLQ----LSSN-RLTH------VDLS 189 (597)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC--CTTTTTTCTTCCEEE----CTTS-CCSB------CCGG
T ss_pred CCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC--ChhhhhcCCcCcEEE----CcCC-CCCC------cChh
Confidence 9999999999999999987 58999999999998876332 222333444443221 1100 0111 1245
Q ss_pred CCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCCCCCC
Q 003367 618 SKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLPSLGR 697 (826)
Q Consensus 618 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~ 697 (826)
.+++|+.|+++.+.+. .+..+++|+.|++++|.+..+ |..+ .++|+.|+|++|.+.+ ++.++.
T Consensus 190 ~l~~L~~L~l~~n~l~-------------~l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~-~~~l~~ 252 (597)
T 3oja_B 190 LIPSLFHANVSYNLLS-------------TLAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD-TAWLLN 252 (597)
T ss_dssp GCTTCSEEECCSSCCS-------------EEECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC-CGGGGG
T ss_pred hhhhhhhhhcccCccc-------------cccCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC-Chhhcc
Confidence 5678888888877643 234567899999999999887 4433 3789999999999876 467889
Q ss_pred CCccceeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCC
Q 003367 698 LPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGC 777 (826)
Q Consensus 698 l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c 777 (826)
+++|+.|+|+++..-...+.. +..+++|+.|+|++| .+..++. .+..+++|+.|+|++|
T Consensus 253 l~~L~~L~Ls~N~l~~~~~~~--------------~~~l~~L~~L~Ls~N-~l~~l~~------~~~~l~~L~~L~Ls~N 311 (597)
T 3oja_B 253 YPGLVEVDLSYNELEKIMYHP--------------FVKMQRLERLYISNN-RLVALNL------YGQPIPTLKVLDLSHN 311 (597)
T ss_dssp CTTCSEEECCSSCCCEEESGG--------------GTTCSSCCEEECTTS-CCCEEEC------SSSCCTTCCEEECCSS
T ss_pred CCCCCEEECCCCccCCCCHHH--------------hcCccCCCEEECCCC-CCCCCCc------ccccCCCCcEEECCCC
Confidence 999999999976532222222 346899999999998 4555533 4457999999999997
Q ss_pred CCCCCCCCCCcccCCcceEEEccccc
Q 003367 778 HKLKALPDHLLLTTKMNELTMNWCSV 803 (826)
Q Consensus 778 ~~l~~lp~~l~~l~~L~~L~l~~c~~ 803 (826)
+ +..+|..+..+++|+.|++++|+-
T Consensus 312 ~-l~~i~~~~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 312 H-LLHVERNQPQFDRLENLYLDHNSI 336 (597)
T ss_dssp C-CCCCGGGHHHHTTCSEEECCSSCC
T ss_pred C-CCccCcccccCCCCCEEECCCCCC
Confidence 5 668998888899999999999974
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=6.5e-22 Score=219.12 Aligned_cols=276 Identities=18% Similarity=0.161 Sum_probs=201.8
Q ss_pred hhhhccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchh
Q 003367 455 PSLFDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQG 534 (826)
Q Consensus 455 ~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~ 534 (826)
+..+.++++|++|+++ ++ .+..+| .++.+++|++|+|++|. +..+| ++.+++|++|++++|.+. .+|
T Consensus 35 ~~~~~~l~~L~~L~Ls-----~n-~l~~~~-~l~~l~~L~~L~Ls~n~-l~~~~--~~~l~~L~~L~Ls~N~l~-~~~-- 101 (457)
T 3bz5_A 35 TISEEQLATLTSLDCH-----NS-SITDMT-GIEKLTGLTKLICTSNN-ITTLD--LSQNTNLTYLACDSNKLT-NLD-- 101 (457)
T ss_dssp EEEHHHHTTCCEEECC-----SS-CCCCCT-TGGGCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSCCS-CCC--
T ss_pred ccChhHcCCCCEEEcc-----CC-CcccCh-hhcccCCCCEEEccCCc-CCeEc--cccCCCCCEEECcCCCCc-eee--
Confidence 3467889999999999 55 555666 68999999999999999 66676 899999999999999954 455
Q ss_pred hhcccCCCeeeecCcccccCCccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhh
Q 003367 535 IAKLINLRHLINEGTPLLYLPKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSA 614 (826)
Q Consensus 535 i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~ 614 (826)
++++++|++|++++|.+..+| ++++++|++|++..+.... . . +..+..|..+ .+..-..+.. .
T Consensus 102 ~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l-~---l~~l~~L~~L----~l~~n~~~~~------~ 164 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE-I-D---VSHNTQLTEL----DCHLNKKITK------L 164 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSC-C-C---CTTCTTCCEE----ECTTCSCCCC------C
T ss_pred cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccce-e-c---cccCCcCCEE----ECCCCCcccc------c
Confidence 899999999999999999886 8999999999988876532 1 2 3333333322 1111111111 1
Q ss_pred hccCCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCCC
Q 003367 615 KLESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLPS 694 (826)
Q Consensus 615 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~ 694 (826)
.+..+++|+.|+++.+.+... .+..+++|+.|++++|.+.+. + +..+++|++|++++|.+.+ +|
T Consensus 165 ~~~~l~~L~~L~ls~n~l~~l-----------~l~~l~~L~~L~l~~N~l~~~-~--l~~l~~L~~L~Ls~N~l~~-ip- 228 (457)
T 3bz5_A 165 DVTPQTQLTTLDCSFNKITEL-----------DVSQNKLLNRLNCDTNNITKL-D--LNQNIQLTFLDCSSNKLTE-ID- 228 (457)
T ss_dssp CCTTCTTCCEEECCSSCCCCC-----------CCTTCTTCCEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC-
T ss_pred ccccCCcCCEEECCCCcccee-----------ccccCCCCCEEECcCCcCCee-c--cccCCCCCEEECcCCcccc-cC-
Confidence 366778999999998876532 156788999999999999986 3 8899999999999999987 66
Q ss_pred CCCCCccceeeccccccceEeCcccccCCCCccccCccCcCCCcc----------ceeeccccccccccccccccccCcC
Q 003367 695 LGRLPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKL----------KFLEFRDMDEWEEWDYVISGQKDIK 764 (826)
Q Consensus 695 l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L----------~~L~l~~~~~l~~~~~~~~~~~~~~ 764 (826)
++.+++|+.|+++++. +.+.. ...+++| +.|++++|..+..++ ..
T Consensus 229 ~~~l~~L~~L~l~~N~--------l~~~~---------~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--------~~ 283 (457)
T 3bz5_A 229 VTPLTQLTYFDCSVNP--------LTELD---------VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--------AE 283 (457)
T ss_dssp CTTCTTCSEEECCSSC--------CSCCC---------CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--------CT
T ss_pred ccccCCCCEEEeeCCc--------CCCcC---------HHHCCCCCEEeccCCCCCEEECCCCccCCccc--------cc
Confidence 8899999999999654 22221 1234444 555555554443332 34
Q ss_pred CCCccceeeecCCCCCCCCCCC--------CcccCCcceEEEccc
Q 003367 765 IMPRLHRLKLDGCHKLKALPDH--------LLLTTKMNELTMNWC 801 (826)
Q Consensus 765 ~l~~L~~L~l~~c~~l~~lp~~--------l~~l~~L~~L~l~~c 801 (826)
.+++|+.|++++|+.++.+|.. +..+++|+.|++++|
T Consensus 284 ~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N 328 (457)
T 3bz5_A 284 GCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT 328 (457)
T ss_dssp TCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC
T ss_pred ccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC
Confidence 7899999999999887777642 233445555555544
No 40
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=4.4e-22 Score=234.14 Aligned_cols=132 Identities=22% Similarity=0.197 Sum_probs=100.3
Q ss_pred CCcceEEEEEecCCCCccccCCcccchhhhchhhhccCCCCcEEeccccccccccccccccc-cccCCCCccEEEccCCC
Q 003367 424 ETKLRSLSIVHKSNSSTIFPGIRDSVADIALPSLFDRLTCLRTLCLRCHERHFCLSIARLPR-NIKKLKHLRYLNLSNND 502 (826)
Q Consensus 424 ~~~lr~l~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~-~i~~l~~L~~L~Ls~~~ 502 (826)
...++.|+++.+... ...|..|.++++|++|+|+ +| .+..+|. .|+++++|++|+|++|.
T Consensus 48 l~~L~~L~Ls~n~l~-------------~~~~~~~~~l~~L~~L~L~-----~n-~l~~l~~~~~~~l~~L~~L~L~~n~ 108 (680)
T 1ziw_A 48 YSQLTSLDVGFNTIS-------------KLEPELCQKLPMLKVLNLQ-----HN-ELSQLSDKTFAFCTNLTELHLMSNS 108 (680)
T ss_dssp GTTCSEEECCSSCCC-------------CCCTTHHHHCTTCCEEECC-----SS-CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CCcCcEEECCCCccC-------------ccCHHHHhcccCcCEEECC-----CC-ccCccChhhhccCCCCCEEECCCCc
Confidence 467889988877322 2346778889999999998 55 5566665 58889999999999998
Q ss_pred CccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCcccccCCcc---CCCCCCCCcCCceeeCc
Q 003367 503 AIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPLLYLPKG---LERLTCLRTLSEFTVSD 574 (826)
Q Consensus 503 ~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~---i~~L~~L~~L~~~~~~~ 574 (826)
+.+..|..|+++++|++|++++|.+.+..|..++++++|++|++++|.+..++.. ...+++|++|++..+..
T Consensus 109 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 109 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 4333346788899999999999987777777888899999999998888866543 23557888888777654
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=1.1e-21 Score=208.76 Aligned_cols=294 Identities=17% Similarity=0.136 Sum_probs=152.4
Q ss_pred CCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCCC
Q 003367 463 CLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINLR 542 (826)
Q Consensus 463 ~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~ 542 (826)
++++++++ ++ .+..+|..+. ++|++|++++|.+....|..|.++++|++|++++|.+.+..|..++++++|+
T Consensus 34 ~l~~l~~~-----~~-~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 105 (332)
T 2ft3_A 34 HLRVVQCS-----DL-GLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105 (332)
T ss_dssp ETTEEECC-----SS-CCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCC
T ss_pred cCCEEECC-----CC-CccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCC
Confidence 34555554 33 3444444432 4555555555552222233455555555555555554444455555555555
Q ss_pred eeeecCcccccCCccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCCcC
Q 003367 543 HLINEGTPLLYLPKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKHL 622 (826)
Q Consensus 543 ~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L 622 (826)
+|++++|.+..+|..+. ++|++|++.++..... ....+..+.+|..+. +..- .+.. .......+..+ +|
T Consensus 106 ~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~----l~~n-~l~~-~~~~~~~~~~l-~L 174 (332)
T 2ft3_A 106 KLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKV--PKGVFSGLRNMNCIE----MGGN-PLEN-SGFEPGAFDGL-KL 174 (332)
T ss_dssp EEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCC--CSGGGSSCSSCCEEE----CCSC-CCBG-GGSCTTSSCSC-CC
T ss_pred EEECCCCcCCccCcccc--ccCCEEECCCCccCcc--CHhHhCCCccCCEEE----CCCC-cccc-CCCCcccccCC-cc
Confidence 55555555555554443 4555555544433111 111112222221110 0000 0000 00111223333 56
Q ss_pred CceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC-CCCCCCcc
Q 003367 623 VCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP-SLGRLPSL 701 (826)
Q Consensus 623 ~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L 701 (826)
+.|+++.+.+.... ..+ +++|++|++++|.+...+|..+..+++|++|+|++|.+.+..+ .++.+++|
T Consensus 175 ~~L~l~~n~l~~l~---------~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 243 (332)
T 2ft3_A 175 NYLRISEAKLTGIP---------KDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL 243 (332)
T ss_dssp SCCBCCSSBCSSCC---------SSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC
T ss_pred CEEECcCCCCCccC---------ccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC
Confidence 66666666644321 111 2678888888888888766778888888888888888776655 57778888
Q ss_pred ceeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccccccccccc-cccccCcCCCCccceeeecCCCCC
Q 003367 702 ESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYV-ISGQKDIKIMPRLHRLKLDGCHKL 780 (826)
Q Consensus 702 ~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~~~~l~~L~~L~l~~c~~l 780 (826)
+.|+++++. +..++.. ...+++|++|++++| .+..++.. +........+++|+.|++++|+..
T Consensus 244 ~~L~L~~N~-l~~lp~~--------------l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 244 RELHLDNNK-LSRVPAG--------------LPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CEEECCSSC-CCBCCTT--------------GGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CEEECCCCc-CeecChh--------------hhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCccc
Confidence 888887653 2222221 235778888888887 34444320 111001112567888888887754
Q ss_pred --CCCCCCCcccCCcceEEEcccc
Q 003367 781 --KALPDHLLLTTKMNELTMNWCS 802 (826)
Q Consensus 781 --~~lp~~l~~l~~L~~L~l~~c~ 802 (826)
...|..+..+++|+.|++++|.
T Consensus 308 ~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 308 YWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccCcccccccchhhhhhccccc
Confidence 3445556677888888888774
No 42
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=5.8e-21 Score=229.04 Aligned_cols=262 Identities=21% Similarity=0.140 Sum_probs=138.1
Q ss_pred CCCCcceEEEEEecCCCCccccCCcccchhhhchhhhccCCCCcEEecccccccccccccc-ccccccCCCCccEEEccC
Q 003367 422 CNETKLRSLSIVHKSNSSTIFPGIRDSVADIALPSLFDRLTCLRTLCLRCHERHFCLSIAR-LPRNIKKLKHLRYLNLSN 500 (826)
Q Consensus 422 ~~~~~lr~l~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~-lp~~i~~l~~L~~L~Ls~ 500 (826)
.....++.|+++.+..... +.|..|.++++|++|+|+ +| .+.. .|..|+++++|++|+|++
T Consensus 45 ~~l~~L~~LdLs~n~~~~~------------i~~~~f~~L~~L~~L~Ls-----~N-~l~~~~p~~~~~l~~L~~L~Ls~ 106 (844)
T 3j0a_A 45 PFLEQLQLLELGSQYTPLT------------IDKEAFRNLPNLRILDLG-----SS-KIYFLHPDAFQGLFHLFELRLYF 106 (844)
T ss_dssp SSCCSCSEEEECTTCCCCE------------ECTTTTSSCTTCCEEECT-----TC-CCCEECTTSSCSCSSCCCEECTT
T ss_pred cccccCeEEeCCCCCCccc------------cCHHHhcCCCCCCEEECC-----CC-cCcccCHhHccCCcccCEeeCcC
Confidence 3467889999887733221 124556666666666666 33 2333 255666666666666666
Q ss_pred CCCccccchh--hcCCCCCcEEeccCCCCCcccc-hhhhcccCCCeeeecCccccc-CCccCCCC--CCCCcCCceeeCc
Q 003367 501 NDAIYELPEA--LCDLCNLQTLDVSNCGNLHALP-QGIAKLINLRHLINEGTPLLY-LPKGLERL--TCLRTLSEFTVSD 574 (826)
Q Consensus 501 ~~~~~~lp~~--i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~l~~-lp~~i~~L--~~L~~L~~~~~~~ 574 (826)
|.+.+.+|.. +.++++|++|+|++|.+.+..| ..++++++|++|++++|.+.. .|..+..+ ++|+.|++..+..
T Consensus 107 n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l 186 (844)
T 3j0a_A 107 CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSL 186 (844)
T ss_dssp CCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBS
T ss_pred CCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcc
Confidence 6644444443 6666666666666666444322 456666666666666665553 23334433 4444444444332
Q ss_pred ccCcCc-ccCcc------cccccccCCC--------------------c-------------------------------
Q 003367 575 IENVSK-AGSLQ------CLQNLNHLQG--------------------S------------------------------- 596 (826)
Q Consensus 575 ~~~~~~-~~~l~------~L~~L~~L~~--------------------~------------------------------- 596 (826)
....+. ...+. .|..|..-.+ .
T Consensus 187 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~ 266 (844)
T 3j0a_A 187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS 266 (844)
T ss_dssp CCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTS
T ss_pred ccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccC
Confidence 111100 00000 0111100000 0
Q ss_pred -eEEcccCCCCChhhhhhhhccCCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCc
Q 003367 597 -LVLTALGNVTDVGEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSL 675 (826)
Q Consensus 597 -l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l 675 (826)
+....+.. ..+.......+..+++|+.|+++.|.+... .+..+..+++|++|+|++|.+....|.++..+
T Consensus 267 ~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~--------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 337 (844)
T 3j0a_A 267 SVRHLDLSH-GFVFSLNSRVFETLKDLKVLNLAYNKINKI--------ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL 337 (844)
T ss_dssp CCCEEECTT-CCCCEECSCCSSSCCCCCEEEEESCCCCEE--------CTTTTTTCSSCCEEEEESCCCSCCCSCSCSSC
T ss_pred CccEEECCC-CcccccChhhhhcCCCCCEEECCCCcCCCC--------ChHHhcCCCCCCEEECCCCCCCccCHHHhcCC
Confidence 00000000 000111123345566677777776664322 12345667788888888888777767777788
Q ss_pred cCCcEEEEecCCCCCCCC-CCCCCCccceeeccccc
Q 003367 676 TELRMLNLQRCGKCEQLP-SLGRLPSLESLVVEALS 710 (826)
Q Consensus 676 ~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 710 (826)
++|+.|+|++|.+....+ .+..+++|+.|+|+++.
T Consensus 338 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred CCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence 888888888887755444 57777777777777543
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=3.2e-21 Score=205.14 Aligned_cols=293 Identities=16% Similarity=0.165 Sum_probs=143.9
Q ss_pred CCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccc-hhhcCCCCCcEEeccCCCCCcccchhhhcccCC
Q 003367 463 CLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELP-EALCDLCNLQTLDVSNCGNLHALPQGIAKLINL 541 (826)
Q Consensus 463 ~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L 541 (826)
++++++++ ++ .+..+|..+. ++|++|+|++|. ++.+| ..|.++++|++|++++|.+.+..|..++.+++|
T Consensus 32 ~l~~l~~~-----~~-~l~~lp~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (330)
T 1xku_A 32 HLRVVQCS-----DL-GLEKVPKDLP--PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102 (330)
T ss_dssp ETTEEECT-----TS-CCCSCCCSCC--TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred CCeEEEec-----CC-CccccCccCC--CCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCC
Confidence 56666666 33 4455565443 566777777776 44443 356677777777777776555556667777777
Q ss_pred CeeeecCcccccCCccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCCc
Q 003367 542 RHLINEGTPLLYLPKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKH 621 (826)
Q Consensus 542 ~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~ 621 (826)
++|++++|.+..+|..+. ++|++|++.++..... ....+..+.+|..+. +..- .+. ........+..+++
T Consensus 103 ~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~----l~~n-~l~-~~~~~~~~~~~l~~ 172 (330)
T 1xku_A 103 ERLYLSKNQLKELPEKMP--KTLQELRVHENEITKV--RKSVFNGLNQMIVVE----LGTN-PLK-SSGIENGAFQGMKK 172 (330)
T ss_dssp CEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBB--CHHHHTTCTTCCEEE----CCSS-CCC-GGGBCTTGGGGCTT
T ss_pred CEEECCCCcCCccChhhc--ccccEEECCCCccccc--CHhHhcCCccccEEE----CCCC-cCC-ccCcChhhccCCCC
Confidence 777777777666666554 5666666555433111 001111111111110 0000 000 00011123444555
Q ss_pred CCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC-CCCCCCc
Q 003367 622 LVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP-SLGRLPS 700 (826)
Q Consensus 622 L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~l~~ 700 (826)
|+.|+++.+.+.... ..+ +++|++|++++|.+.+..|.++..+++|++|+|++|.+.+..+ .+..+++
T Consensus 173 L~~L~l~~n~l~~l~---------~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 241 (330)
T 1xku_A 173 LSYIRIADTNITTIP---------QGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241 (330)
T ss_dssp CCEEECCSSCCCSCC---------SSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTT
T ss_pred cCEEECCCCccccCC---------ccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCC
Confidence 566666555543211 111 2566666666666666555566666666666666666655444 4556666
Q ss_pred cceeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccccccccccc-cccccCcCCCCccceeeecCCCC
Q 003367 701 LESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYV-ISGQKDIKIMPRLHRLKLDGCHK 779 (826)
Q Consensus 701 L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~~~~l~~L~~L~l~~c~~ 779 (826)
|+.|+++++. +..++. ....+++|++|++++| .++.++.. +.........++|+.|++++|+.
T Consensus 242 L~~L~L~~N~-l~~lp~--------------~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 242 LRELHLNNNK-LVKVPG--------------GLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp CCEEECCSSC-CSSCCT--------------TTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred CCEEECCCCc-CccCCh--------------hhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcc
Confidence 6666666443 211111 1224566666666665 23333220 00000111235566666666553
Q ss_pred CC--CCCCCCcccCCcceEEEccc
Q 003367 780 LK--ALPDHLLLTTKMNELTMNWC 801 (826)
Q Consensus 780 l~--~lp~~l~~l~~L~~L~l~~c 801 (826)
.. ..|..+..+.+|+.+++++|
T Consensus 306 ~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 306 QYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CGGGSCGGGGTTCCCGGGEEC---
T ss_pred cccccCccccccccceeEEEeccc
Confidence 21 22334444556666666554
No 44
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=4.5e-21 Score=223.92 Aligned_cols=131 Identities=23% Similarity=0.191 Sum_probs=101.6
Q ss_pred CCcceEEEEEecCCCCccccCCcccchhhhchhhhccCCCCcEEecccccccccccccccc-ccccCCCCccEEEccCCC
Q 003367 424 ETKLRSLSIVHKSNSSTIFPGIRDSVADIALPSLFDRLTCLRTLCLRCHERHFCLSIARLP-RNIKKLKHLRYLNLSNND 502 (826)
Q Consensus 424 ~~~lr~l~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~l~~L~~L~Ls~~~ 502 (826)
+..+++|++++|.. +.+.+..|.++++|++|+|+ +| .+..+| .+|.+|++|++|+|++|.
T Consensus 51 p~~~~~LdLs~N~i-------------~~l~~~~f~~l~~L~~L~Ls-----~N-~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 51 PFSTKNLDLSFNPL-------------RHLGSYSFFSFPELQVLDLS-----RC-EIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp CTTCCEEECTTSCC-------------CEECTTTTTTCTTCCEEECT-----TC-CCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CcCCCEEEeeCCCC-------------CCCCHHHHhCCCCCCEEECC-----CC-cCCCcChhHhcCCCCCCEEEccCCc
Confidence 56788888887732 23335678999999999998 55 566664 468889999999999998
Q ss_pred Cccccc-hhhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCccccc--CCccCCCCCCCCcCCceeeCc
Q 003367 503 AIYELP-EALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPLLY--LPKGLERLTCLRTLSEFTVSD 574 (826)
Q Consensus 503 ~~~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~~~~~~~ 574 (826)
+..+| ..|.++++|++|+|++|.+.+..+..|+++++|++|++++|.+.. +|..++.+++|++|++..+..
T Consensus 112 -l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 112 -IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp -CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred -CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 66666 458899999999999998554444568899999999999998874 467788889999888776644
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=2e-20 Score=199.05 Aligned_cols=274 Identities=21% Similarity=0.237 Sum_probs=170.5
Q ss_pred CCCcEEeccccccccccccccc-cccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccC
Q 003367 462 TCLRTLCLRCHERHFCLSIARL-PRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLIN 540 (826)
Q Consensus 462 ~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~ 540 (826)
++|++|+++ ++ .+..+ |..|.++++|++|+|++|.+....|..+.++++|++|++++|. +..+|..+. ++
T Consensus 54 ~~l~~L~l~-----~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~--~~ 124 (332)
T 2ft3_A 54 PDTTLLDLQ-----NN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLP--SS 124 (332)
T ss_dssp TTCCEEECC-----SS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCC--TT
T ss_pred CCCeEEECC-----CC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCcccc--cc
Confidence 467777776 33 34444 3456777777777777776443446667777777777777776 445665554 67
Q ss_pred CCeeeecCcccccCCcc-CCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCC
Q 003367 541 LRHLINEGTPLLYLPKG-LERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESK 619 (826)
Q Consensus 541 L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~ 619 (826)
|++|++++|.+..+|.. +.++++|++|++.++...........+..+ +|..+. +....+..+. ..+ .
T Consensus 125 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~--l~~n~l~~l~-------~~~--~ 192 (332)
T 2ft3_A 125 LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLR--ISEAKLTGIP-------KDL--P 192 (332)
T ss_dssp CCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCB--CCSSBCSSCC-------SSS--C
T ss_pred CCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEE--CcCCCCCccC-------ccc--c
Confidence 77777777777766654 666777777766665442110111122222 222221 0000111111 011 1
Q ss_pred CcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC-CCCCC
Q 003367 620 KHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP-SLGRL 698 (826)
Q Consensus 620 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~l 698 (826)
++|+.|+++.+.+.... +..+..+++|++|++++|.+.+.+|.++..+++|++|+|++|.+. .+| .++.+
T Consensus 193 ~~L~~L~l~~n~i~~~~--------~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 263 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIE--------LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDL 263 (332)
T ss_dssp SSCSCCBCCSSCCCCCC--------TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGC
T ss_pred CCCCEEECCCCcCCccC--------HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcC
Confidence 57888888887754322 345778899999999999999997789999999999999999987 555 78999
Q ss_pred CccceeeccccccceEeCcccc-cCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCC
Q 003367 699 PSLESLVVEALSSVRRVGNEFL-GIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGC 777 (826)
Q Consensus 699 ~~L~~L~L~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c 777 (826)
++|+.|+++++. +..++.... +.. ....+++|+.|++.+|+ +..+.. .+..+..+++|+.|++++|
T Consensus 264 ~~L~~L~l~~N~-l~~~~~~~~~~~~--------~~~~~~~l~~L~l~~N~-~~~~~~---~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 264 KLLQVVYLHTNN-ITKVGVNDFCPVG--------FGVKRAYYNGISLFNNP-VPYWEV---QPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp TTCCEEECCSSC-CCBCCTTSSSCSS--------CCSSSCCBSEEECCSSS-SCGGGS---CGGGGTTBCCSTTEEC---
T ss_pred ccCCEEECCCCC-CCccChhHccccc--------cccccccccceEeecCc-cccccc---Ccccccccchhhhhhcccc
Confidence 999999999765 333332222 111 11237889999999996 332211 1345678999999999997
Q ss_pred C
Q 003367 778 H 778 (826)
Q Consensus 778 ~ 778 (826)
+
T Consensus 331 ~ 331 (332)
T 2ft3_A 331 K 331 (332)
T ss_dssp -
T ss_pred c
Confidence 5
No 46
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.85 E-value=4.7e-21 Score=219.40 Aligned_cols=58 Identities=24% Similarity=0.370 Sum_probs=39.6
Q ss_pred CCcCeEEEeccCCCCCCCCcc-cCccCCcEEEEecCCCCCCCC----CCCCCCccceeeccccc
Q 003367 652 PDLEKLTICDYKSKIISPSWL-MSLTELRMLNLQRCGKCEQLP----SLGRLPSLESLVVEALS 710 (826)
Q Consensus 652 ~~L~~L~L~~~~~~~~~p~~l-~~l~~L~~L~L~~~~~~~~l~----~l~~l~~L~~L~L~~~~ 710 (826)
++|++|++++|.+..+ |.++ ..+++|++|+|++|.+.+.+| .++.+++|+.|+++++.
T Consensus 310 ~~L~~L~l~~n~l~~i-p~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~ 372 (549)
T 2z81_A 310 EKVKRITVENSKVFLV-PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH 372 (549)
T ss_dssp TTCCEEEEESSCCCCC-CHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC
T ss_pred ccceEEEeccCccccC-CHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc
Confidence 3566666666666655 5544 467888888888888776542 36777888888887654
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=1.2e-20 Score=200.83 Aligned_cols=139 Identities=13% Similarity=0.107 Sum_probs=97.9
Q ss_pred CcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCCCCCCCC
Q 003367 620 KHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLPSLGRLP 699 (826)
Q Consensus 620 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~ 699 (826)
++|+.|+++.+.+... .+..+..+++|++|++++|.+.+.++.++..+++|++|+|++|.+......+..++
T Consensus 192 ~~L~~L~l~~n~l~~~--------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~ 263 (330)
T 1xku_A 192 PSLTELHLDGNKITKV--------DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHK 263 (330)
T ss_dssp TTCSEEECTTSCCCEE--------CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCS
T ss_pred ccCCEEECCCCcCCcc--------CHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCC
Confidence 5677788877764422 23456778999999999999999877789999999999999999874434789999
Q ss_pred ccceeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCCC
Q 003367 700 SLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCH 778 (826)
Q Consensus 700 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 778 (826)
+|++|+++++. +..++...+... .....+++|+.|++.+|+ +..+.. .+..+..+++|+.++|++|+
T Consensus 264 ~L~~L~l~~N~-i~~~~~~~f~~~-------~~~~~~~~l~~l~l~~N~-~~~~~i---~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 264 YIQVVYLHNNN-ISAIGSNDFCPP-------GYNTKKASYSGVSLFSNP-VQYWEI---QPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCCEEECCSSC-CCCCCTTSSSCS-------SCCTTSCCCSEEECCSSS-SCGGGS---CGGGGTTCCCGGGEEC----
T ss_pred CcCEEECCCCc-CCccChhhcCCc-------ccccccccccceEeecCc-cccccc---CccccccccceeEEEecccC
Confidence 99999999765 333332222110 112246889999999996 333221 23567789999999999863
No 48
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=7.9e-21 Score=217.73 Aligned_cols=311 Identities=18% Similarity=0.125 Sum_probs=194.0
Q ss_pred CCCcEEecccccccccccccccc-ccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccC
Q 003367 462 TCLRTLCLRCHERHFCLSIARLP-RNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLIN 540 (826)
Q Consensus 462 ~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~ 540 (826)
++|++|+|+ +| .+..+| ..|.++++|++|+|++|.+.+..|..|.++++|++|++++|. +..+|.. .+++
T Consensus 52 ~~L~~L~Ls-----~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~ 122 (562)
T 3a79_B 52 PRTKALSLS-----QN-SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC--PMAS 122 (562)
T ss_dssp TTCCEEECC-----SS-CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECSC--CCTT
T ss_pred CCcCEEECC-----CC-CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCcc--cccc
Confidence 799999999 55 455554 689999999999999999555557889999999999999999 5578877 8999
Q ss_pred CCeeeecCcccccCC--ccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEccc----------CCCC--
Q 003367 541 LRHLINEGTPLLYLP--KGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTAL----------GNVT-- 606 (826)
Q Consensus 541 L~~L~l~~~~l~~lp--~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l----------~~~~-- 606 (826)
|++|++++|.+..+| ..++++++|++|++..+.... .....+..+ +|..+. +....+ ..+.
T Consensus 123 L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L-~L~~L~--L~~n~l~~~~~~~~~l~~l~~~ 197 (562)
T 3a79_B 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHL-HLSCIL--LDLVSYHIKGGETESLQIPNTT 197 (562)
T ss_dssp CSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTS-CEEEEE--EEESSCCCCSSSCCEEEECCEE
T ss_pred CCEEECCCCCccccCchHhhcccCcccEEecCCCcccc--Cchhhhhhc-eeeEEE--eecccccccccCcccccccCcc
Confidence 999999999999765 689999999999999876632 122333333 112221 111100 0000
Q ss_pred ----------Chhhh----------------------------hhhhccCCCcCCceeeEeecCCCcccccchHHHhhcC
Q 003367 607 ----------DVGEA----------------------------KSAKLESKKHLVCLRLEFIKLGRVELVDKDNEVLEAL 648 (826)
Q Consensus 607 ----------~~~~~----------------------------~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l 648 (826)
..... ....+..+..|+.+.+..+.+..+.. ...+..+
T Consensus 198 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~----~~~~~~~ 273 (562)
T 3a79_B 198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS----VKLFQFF 273 (562)
T ss_dssp EEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHH----HHHHHHH
T ss_pred eEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHH----HHHHHhh
Confidence 00000 01112333444444444444332211 1111111
Q ss_pred CCCCCcCeEEEeccCCCCCCCCcc-----------------------------------------------------cCc
Q 003367 649 QPSPDLEKLTICDYKSKIISPSWL-----------------------------------------------------MSL 675 (826)
Q Consensus 649 ~~~~~L~~L~L~~~~~~~~~p~~l-----------------------------------------------------~~l 675 (826)
..++|++|++++|.+.+.+|.++ ..+
T Consensus 274 -~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l 352 (562)
T 3a79_B 274 -WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSP 352 (562)
T ss_dssp -TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSC
T ss_pred -hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCC
Confidence 12367777777777664445444 567
Q ss_pred cCCcEEEEecCCCCCCCC-CCCCCCccceeeccccccceEeCc---ccccCCCC--------ccc--cC-ccCcCCCccc
Q 003367 676 TELRMLNLQRCGKCEQLP-SLGRLPSLESLVVEALSSVRRVGN---EFLGIESD--------DIS--LS-SSSVVFPKLK 740 (826)
Q Consensus 676 ~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~---~~~~~~~~--------~~~--~~-~~~~~~~~L~ 740 (826)
++|++|++++|.+.+.+| .++.+++|+.|+++++. +..++. .+...... ... ++ .....+++|+
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~ 431 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred CCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence 889999999999888666 78899999999998654 222111 01100000 000 00 0123345555
Q ss_pred eeeccccccccccccccccccCcCCC-CccceeeecCCCCCCCCCCCCcccCCcceEEEcccc
Q 003367 741 FLEFRDMDEWEEWDYVISGQKDIKIM-PRLHRLKLDGCHKLKALPDHLLLTTKMNELTMNWCS 802 (826)
Q Consensus 741 ~L~l~~~~~l~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 802 (826)
+|++++|...... ...+ ++|+.|++++| .++.+|..+..+++|+.|++++|.
T Consensus 432 ~L~l~~n~l~~~~---------~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 432 VLNLSSNMLTGSV---------FRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ 484 (562)
T ss_dssp EEECCSSCCCGGG---------GSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC
T ss_pred EEECCCCCCCcch---------hhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC
Confidence 5555555311111 1133 68999999986 577899888889999999999885
No 49
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.85 E-value=3.9e-21 Score=221.31 Aligned_cols=120 Identities=23% Similarity=0.139 Sum_probs=99.0
Q ss_pred chhhhchhhhccCCCCcEEeccccccccccccccc-cccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCC
Q 003367 449 VADIALPSLFDRLTCLRTLCLRCHERHFCLSIARL-PRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGN 527 (826)
Q Consensus 449 ~l~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~ 527 (826)
.+..+.+..|.++++|++|+|+ +| .+..+ |..|.++++|++|+|++|.+....|..|+++++|++|++++|.+
T Consensus 39 ~l~~~~~~~~~~l~~L~~L~Ls-----~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 112 (570)
T 2z63_A 39 PLRHLGSYSFFSFPELQVLDLS-----RC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112 (570)
T ss_dssp CCCEECTTTTTTCSSCCEEECT-----TC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred ccCccChhHhhCCCCceEEECC-----CC-cCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccccc
Confidence 3444556789999999999999 55 45555 46789999999999999994444457899999999999999984
Q ss_pred CcccchhhhcccCCCeeeecCccccc--CCccCCCCCCCCcCCceeeCc
Q 003367 528 LHALPQGIAKLINLRHLINEGTPLLY--LPKGLERLTCLRTLSEFTVSD 574 (826)
Q Consensus 528 ~~~lp~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~~~~~~~ 574 (826)
....+..++++++|++|++++|.+.. +|..++++++|++|++.++..
T Consensus 113 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l 161 (570)
T 2z63_A 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (570)
T ss_dssp CCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred ccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcc
Confidence 44333369999999999999999985 689999999999999887765
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=2.2e-20 Score=196.41 Aligned_cols=236 Identities=17% Similarity=0.166 Sum_probs=141.2
Q ss_pred ccccccccccCCCCccEEEccCCCCccccchh-hcCCCCCcEEeccCCCCCc--ccchhhhcccCCCeeeecCcccccCC
Q 003367 479 SIARLPRNIKKLKHLRYLNLSNNDAIYELPEA-LCDLCNLQTLDVSNCGNLH--ALPQGIAKLINLRHLINEGTPLLYLP 555 (826)
Q Consensus 479 ~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~-i~~L~~L~~L~L~~~~~~~--~lp~~i~~L~~L~~L~l~~~~l~~lp 555 (826)
.+..+|..+. ++|++|+|++|. +..+|.. +.++++|++|++++|.+.. ..|..+..+++|++|++++|.+..+|
T Consensus 18 ~l~~ip~~~~--~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~ 94 (306)
T 2z66_A 18 GLTSVPTGIP--SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 94 (306)
T ss_dssp CCSSCCSCCC--TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEE
T ss_pred CcccCCCCCC--CCCCEEECCCCc-cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccCh
Confidence 5666776553 678888888887 6667654 6788888888888887432 23667777888888888888888887
Q ss_pred ccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCCcCCceeeEeecCCCc
Q 003367 556 KGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKHLVCLRLEFIKLGRV 635 (826)
Q Consensus 556 ~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 635 (826)
..+..+++|++|++.++..... .
T Consensus 95 ~~~~~l~~L~~L~l~~n~l~~~----------~----------------------------------------------- 117 (306)
T 2z66_A 95 SNFLGLEQLEHLDFQHSNLKQM----------S----------------------------------------------- 117 (306)
T ss_dssp EEEETCTTCCEEECTTSEEESS----------T-----------------------------------------------
T ss_pred hhcCCCCCCCEEECCCCccccc----------c-----------------------------------------------
Confidence 7777788888776654432100 0
Q ss_pred ccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCC-CCC-CCCCCCccceeeccccccce
Q 003367 636 ELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCE-QLP-SLGRLPSLESLVVEALSSVR 713 (826)
Q Consensus 636 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~-~l~-~l~~l~~L~~L~L~~~~~l~ 713 (826)
....+..+++|++|++++|.+....|..+..+++|++|+|++|.+.+ .+| .+..+++|++|+++++. +.
T Consensus 118 --------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~ 188 (306)
T 2z66_A 118 --------EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LE 188 (306)
T ss_dssp --------TTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CC
T ss_pred --------cchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC-cC
Confidence 00122334556666666665555545556666666666666665554 233 55566666666666443 11
Q ss_pred EeCcccccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCCCCCCCCCCCCccc-CC
Q 003367 714 RVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKLKALPDHLLLT-TK 792 (826)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l-~~ 792 (826)
.... ..+..+++|++|++++|. +..++. ..+..+++|+.|++++|+.....|..+..+ ++
T Consensus 189 ~~~~-------------~~~~~l~~L~~L~L~~N~-l~~~~~-----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~ 249 (306)
T 2z66_A 189 QLSP-------------TAFNSLSSLQVLNMSHNN-FFSLDT-----FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 249 (306)
T ss_dssp EECT-------------TTTTTCTTCCEEECTTSC-CSBCCS-----GGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTT
T ss_pred CcCH-------------HHhcCCCCCCEEECCCCc-cCccCh-----hhccCcccCCEeECCCCCCcccCHHHHHhhhcc
Confidence 1111 012245666666666662 333221 234456777777777765544555555555 36
Q ss_pred cceEEEcccc
Q 003367 793 MNELTMNWCS 802 (826)
Q Consensus 793 L~~L~l~~c~ 802 (826)
|+.|++++|+
T Consensus 250 L~~L~L~~N~ 259 (306)
T 2z66_A 250 LAFLNLTQND 259 (306)
T ss_dssp CCEEECTTCC
T ss_pred CCEEEccCCC
Confidence 7777777665
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=9e-21 Score=203.69 Aligned_cols=256 Identities=19% Similarity=0.152 Sum_probs=152.0
Q ss_pred CCCcEEeccccccccccccccccc-cccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccch-hhhccc
Q 003367 462 TCLRTLCLRCHERHFCLSIARLPR-NIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQ-GIAKLI 539 (826)
Q Consensus 462 ~~Lr~L~L~~~~~~~~~~~~~lp~-~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~ 539 (826)
++|++|+++ ++ .+..+|. .+.++++|++|+|++|.+.+..|..|.++++|++|++++|.+. .+|. .+++++
T Consensus 52 ~~L~~L~l~-----~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~ 124 (353)
T 2z80_A 52 EAVKSLDLS-----NN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLS 124 (353)
T ss_dssp TTCCEEECT-----TS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCT
T ss_pred ccCcEEECC-----CC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCc
Confidence 478888888 44 4555544 6788888888888888744444566888888888888888744 4444 478888
Q ss_pred CCCeeeecCcccccCCc--cCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhcc
Q 003367 540 NLRHLINEGTPLLYLPK--GLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLE 617 (826)
Q Consensus 540 ~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~ 617 (826)
+|++|++++|.+..+|. .+.++++|++|++.++......
T Consensus 125 ~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~--------------------------------------- 165 (353)
T 2z80_A 125 SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI--------------------------------------- 165 (353)
T ss_dssp TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE---------------------------------------
T ss_pred cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccccc---------------------------------------
Confidence 88888888888887776 5777888888777665321110
Q ss_pred CCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC-CCC
Q 003367 618 SKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP-SLG 696 (826)
Q Consensus 618 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~ 696 (826)
.+..+..+++|++|++++|.+.+..|.++..+++|++|++++|.+....+ .+.
T Consensus 166 --------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 219 (353)
T 2z80_A 166 --------------------------QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVD 219 (353)
T ss_dssp --------------------------CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHH
T ss_pred --------------------------CHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhh
Confidence 01122334555556666665555555556666666666666665432111 223
Q ss_pred CCCccceeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecC
Q 003367 697 RLPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDG 776 (826)
Q Consensus 697 ~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 776 (826)
.+++|+.|+++++..-......+. .....+.++.+++.++. +..... ...+..+..+++|+.|++++
T Consensus 220 ~~~~L~~L~L~~n~l~~~~~~~l~-----------~~~~~~~l~~l~L~~~~-l~~~~l-~~l~~~l~~l~~L~~L~Ls~ 286 (353)
T 2z80_A 220 VTSSVECLELRDTDLDTFHFSELS-----------TGETNSLIKKFTFRNVK-ITDESL-FQVMKLLNQISGLLELEFSR 286 (353)
T ss_dssp HTTTEEEEEEESCBCTTCCCC-----------------CCCCCCEEEEESCB-CCHHHH-HHHHHHHHTCTTCCEEECCS
T ss_pred hcccccEEECCCCccccccccccc-----------cccccchhhcccccccc-ccCcch-hhhHHHHhcccCCCEEECCC
Confidence 355666666654321100000000 01134455556655552 211100 00022345688888888888
Q ss_pred CCCCCCCCCCC-cccCCcceEEEccccc
Q 003367 777 CHKLKALPDHL-LLTTKMNELTMNWCSV 803 (826)
Q Consensus 777 c~~l~~lp~~l-~~l~~L~~L~l~~c~~ 803 (826)
| .++.+|..+ ..+++|++|++++|+-
T Consensus 287 N-~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 287 N-QLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred C-CCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 6 466888775 6788888888888863
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=1.5e-19 Score=201.14 Aligned_cols=93 Identities=24% Similarity=0.276 Sum_probs=63.8
Q ss_pred ccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCcccccCCcc-
Q 003367 479 SIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPLLYLPKG- 557 (826)
Q Consensus 479 ~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~- 557 (826)
.+..+|..+. ++|++|+|++|.+....|..|.++++|++|+|++|.+.+..|..|.++++|++|++++|.+..+|..
T Consensus 65 ~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 142 (452)
T 3zyi_A 65 GLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGA 142 (452)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTT
T ss_pred CcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhh
Confidence 4556665553 5777777777774444456677777777777777776555556777777777777777777776654
Q ss_pred CCCCCCCCcCCceeeC
Q 003367 558 LERLTCLRTLSEFTVS 573 (826)
Q Consensus 558 i~~L~~L~~L~~~~~~ 573 (826)
+..+++|++|++.++.
T Consensus 143 ~~~l~~L~~L~L~~N~ 158 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNP 158 (452)
T ss_dssp SSSCTTCCEEECCSCC
T ss_pred hcccCCCCEEECCCCC
Confidence 6667777777665543
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=2e-19 Score=199.19 Aligned_cols=93 Identities=23% Similarity=0.206 Sum_probs=62.1
Q ss_pred ccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCcccccCCcc-
Q 003367 479 SIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPLLYLPKG- 557 (826)
Q Consensus 479 ~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~- 557 (826)
.+..+|..+. .++++|+|++|.+....|..|.++++|++|+|++|.+....+..|.++++|++|++++|.+..+|..
T Consensus 54 ~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 131 (440)
T 3zyj_A 54 NLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGA 131 (440)
T ss_dssp CCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTT
T ss_pred CcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhH
Confidence 5566666554 5677777777773333446677777777777777775555556677777777777777777766653
Q ss_pred CCCCCCCCcCCceeeC
Q 003367 558 LERLTCLRTLSEFTVS 573 (826)
Q Consensus 558 i~~L~~L~~L~~~~~~ 573 (826)
+..+++|++|++.++.
T Consensus 132 ~~~l~~L~~L~L~~N~ 147 (440)
T 3zyj_A 132 FVYLSKLKELWLRNNP 147 (440)
T ss_dssp SCSCSSCCEEECCSCC
T ss_pred hhccccCceeeCCCCc
Confidence 6677777777665543
No 54
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.79 E-value=2.1e-18 Score=190.74 Aligned_cols=270 Identities=20% Similarity=0.232 Sum_probs=126.2
Q ss_pred CCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCC
Q 003367 462 TCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINL 541 (826)
Q Consensus 462 ~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L 541 (826)
++|++|++++ | .+..+|.. .++|++|++++|. +..+| .++++++|++|++++|.+ ..+|..+ .+|
T Consensus 111 ~~L~~L~l~~-----n-~l~~l~~~---~~~L~~L~L~~n~-l~~lp-~~~~l~~L~~L~l~~N~l-~~lp~~~---~~L 175 (454)
T 1jl5_A 111 QSLKSLLVDN-----N-NLKALSDL---PPLLEYLGVSNNQ-LEKLP-ELQNSSFLKIIDVDNNSL-KKLPDLP---PSL 175 (454)
T ss_dssp TTCCEEECCS-----S-CCSCCCSC---CTTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCC-SCCCCCC---TTC
T ss_pred CCCcEEECCC-----C-ccCcccCC---CCCCCEEECcCCC-CCCCc-ccCCCCCCCEEECCCCcC-cccCCCc---ccc
Confidence 5666666663 2 23333321 1466666666666 44466 366666666666666653 3355432 366
Q ss_pred CeeeecCcccccCCccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCCc
Q 003367 542 RHLINEGTPLLYLPKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKH 621 (826)
Q Consensus 542 ~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~ 621 (826)
++|++++|.+..+| .++++++|++|++.++.... ++. ....|+.|.--.+ .+..+ ..+..+++
T Consensus 176 ~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~--~~~~L~~L~l~~n-----~l~~l--------p~~~~l~~ 238 (454)
T 1jl5_A 176 EFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPD--LPLSLESIVAGNN-----ILEEL--------PELQNLPF 238 (454)
T ss_dssp CEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCC--CCTTCCEEECCSS-----CCSSC--------CCCTTCTT
T ss_pred cEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCC--CcCcccEEECcCC-----cCCcc--------cccCCCCC
Confidence 66666666666665 46666666666665554321 111 1112222110000 00000 01344555
Q ss_pred CCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCCCCCCCCcc
Q 003367 622 LVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLPSLGRLPSL 701 (826)
Q Consensus 622 L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L 701 (826)
|+.|+++.|.+.... . .+++|++|++++|.+.++ |.+ +++|++|++++|.+.+ +|.+ .++|
T Consensus 239 L~~L~l~~N~l~~l~---------~---~~~~L~~L~l~~N~l~~l-~~~---~~~L~~L~ls~N~l~~-l~~~--~~~L 299 (454)
T 1jl5_A 239 LTTIYADNNLLKTLP---------D---LPPSLEALNVRDNYLTDL-PEL---PQSLTFLDVSENIFSG-LSEL--PPNL 299 (454)
T ss_dssp CCEEECCSSCCSSCC---------S---CCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSE-ESCC--CTTC
T ss_pred CCEEECCCCcCCccc---------c---cccccCEEECCCCccccc-Ccc---cCcCCEEECcCCccCc-ccCc--CCcC
Confidence 666666555433211 0 124556666666555554 432 2455555555555443 1111 1344
Q ss_pred ceeeccccccceEe-------------CcccccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCCCc
Q 003367 702 ESLVVEALSSVRRV-------------GNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPR 768 (826)
Q Consensus 702 ~~L~L~~~~~l~~~-------------~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~ 768 (826)
+.|+++++. +..+ .+.+.+.. ..+++|++|++++| .+..++. .+++
T Consensus 300 ~~L~l~~N~-l~~i~~~~~~L~~L~Ls~N~l~~lp----------~~~~~L~~L~L~~N-~l~~lp~---------~l~~ 358 (454)
T 1jl5_A 300 YYLNASSNE-IRSLCDLPPSLEELNVSNNKLIELP----------ALPPRLERLIASFN-HLAEVPE---------LPQN 358 (454)
T ss_dssp CEEECCSSC-CSEECCCCTTCCEEECCSSCCSCCC----------CCCTTCCEEECCSS-CCSCCCC---------CCTT
T ss_pred CEEECcCCc-CCcccCCcCcCCEEECCCCcccccc----------ccCCcCCEEECCCC-ccccccc---------hhhh
Confidence 444444322 1110 11222211 13578888888887 4444321 4678
Q ss_pred cceeeecCCCCCC--CCCCCCccc-------------CCcceEEEccccc
Q 003367 769 LHRLKLDGCHKLK--ALPDHLLLT-------------TKMNELTMNWCSV 803 (826)
Q Consensus 769 L~~L~l~~c~~l~--~lp~~l~~l-------------~~L~~L~l~~c~~ 803 (826)
|+.|++++|+... .+|.++..+ ++|+.|++++|+-
T Consensus 359 L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 359 LKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408 (454)
T ss_dssp CCEEECCSSCCSSCCCCCTTCCEEECCC----------------------
T ss_pred ccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcC
Confidence 8888888876544 567777666 7788888888753
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=5.3e-19 Score=196.61 Aligned_cols=224 Identities=21% Similarity=0.212 Sum_probs=162.4
Q ss_pred CCCcEEeccccccccccccccc-cccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccC
Q 003367 462 TCLRTLCLRCHERHFCLSIARL-PRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLIN 540 (826)
Q Consensus 462 ~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~ 540 (826)
++|++|+|+ ++ .+..+ |..|.++++|++|+|++|.+....|..|.++++|++|+|++|.+....+..+..+++
T Consensus 75 ~~l~~L~L~-----~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 148 (452)
T 3zyi_A 75 SNTRYLNLM-----EN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSK 148 (452)
T ss_dssp TTCSEEECC-----SS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTT
T ss_pred CCccEEECc-----CC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCC
Confidence 689999999 44 44444 678999999999999999955555678999999999999999965555556889999
Q ss_pred CCeeeecCcccccCCc-cCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCC
Q 003367 541 LRHLINEGTPLLYLPK-GLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESK 619 (826)
Q Consensus 541 L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~ 619 (826)
|++|++++|.+..+|. .+.++++|+.|++..+..+..++ ...+..+
T Consensus 149 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~---------------------------------~~~~~~l 195 (452)
T 3zyi_A 149 LRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS---------------------------------EGAFEGL 195 (452)
T ss_dssp CCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC---------------------------------TTTTTTC
T ss_pred CCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC---------------------------------hhhccCC
Confidence 9999999999998876 48899999999877654432211 0123345
Q ss_pred CcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC-CCCCC
Q 003367 620 KHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP-SLGRL 698 (826)
Q Consensus 620 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~l 698 (826)
.+|+.|+++.|.+... ..+..+++|++|+|++|.+.++.|.++..+++|+.|+|++|.+.+..+ .+..+
T Consensus 196 ~~L~~L~L~~n~l~~~----------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 265 (452)
T 3zyi_A 196 FNLKYLNLGMCNIKDM----------PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265 (452)
T ss_dssp TTCCEEECTTSCCSSC----------CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred CCCCEEECCCCccccc----------ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCC
Confidence 5666677766664422 235567788888888888877777778888888888888888776655 67778
Q ss_pred CccceeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccc
Q 003367 699 PSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMD 748 (826)
Q Consensus 699 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 748 (826)
++|+.|+|+++. +..++... +..+++|+.|+|++|+
T Consensus 266 ~~L~~L~L~~N~-l~~~~~~~-------------~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 266 ASLVELNLAHNN-LSSLPHDL-------------FTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTCCEEECCSSC-CSCCCTTS-------------STTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCc-CCccChHH-------------hccccCCCEEEccCCC
Confidence 888888887553 22222111 2356778888887774
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=6.3e-19 Score=195.24 Aligned_cols=224 Identities=21% Similarity=0.244 Sum_probs=162.2
Q ss_pred CCCcEEeccccccccccccccc-cccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccC
Q 003367 462 TCLRTLCLRCHERHFCLSIARL-PRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLIN 540 (826)
Q Consensus 462 ~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~ 540 (826)
+++++|+|+ ++ .+..+ +..|.++++|++|+|++|.+....|..|.++++|++|+|++|.+....+..|..+++
T Consensus 64 ~~l~~L~L~-----~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 137 (440)
T 3zyj_A 64 TNTRLLNLH-----EN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSK 137 (440)
T ss_dssp TTCSEEECC-----SC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSS
T ss_pred CCCcEEEcc-----CC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhcccc
Confidence 689999999 44 44454 477899999999999999944445577999999999999999855444457899999
Q ss_pred CCeeeecCcccccCCc-cCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCC
Q 003367 541 LRHLINEGTPLLYLPK-GLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESK 619 (826)
Q Consensus 541 L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~ 619 (826)
|++|++++|.+..+|. .+.++++|++|++..+.....++ ...+.++
T Consensus 138 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~---------------------------------~~~~~~l 184 (440)
T 3zyj_A 138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS---------------------------------EGAFEGL 184 (440)
T ss_dssp CCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC---------------------------------TTTTTTC
T ss_pred CceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC---------------------------------cchhhcc
Confidence 9999999999998876 58899999999877654422211 1123345
Q ss_pred CcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC-CCCCC
Q 003367 620 KHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP-SLGRL 698 (826)
Q Consensus 620 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~l 698 (826)
++|+.|+++.|.+... ..+..+++|++|+|++|.+..+.|..+..+++|+.|+|++|.+.+..+ .+..+
T Consensus 185 ~~L~~L~L~~n~l~~~----------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 254 (440)
T 3zyj_A 185 SNLRYLNLAMCNLREI----------PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254 (440)
T ss_dssp SSCCEEECTTSCCSSC----------CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC
T ss_pred cccCeecCCCCcCccc----------cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCC
Confidence 5666677766664422 135667788888888888887777788888888888888888776555 67778
Q ss_pred CccceeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccc
Q 003367 699 PSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMD 748 (826)
Q Consensus 699 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 748 (826)
++|+.|+|+++. +..++... +..+++|+.|+|++|+
T Consensus 255 ~~L~~L~L~~N~-l~~~~~~~-------------~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 255 QSLVEINLAHNN-LTLLPHDL-------------FTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTCCEEECTTSC-CCCCCTTT-------------TSSCTTCCEEECCSSC
T ss_pred CCCCEEECCCCC-CCccChhH-------------hccccCCCEEEcCCCC
Confidence 888888887543 22222111 2356778888888774
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=2.9e-19 Score=187.83 Aligned_cols=199 Identities=20% Similarity=0.174 Sum_probs=136.4
Q ss_pred CCCcEEecccccccccccccccccc-ccCCCCccEEEccCCCCcccc---chhhcCCCCCcEEeccCCCCCcccchhhhc
Q 003367 462 TCLRTLCLRCHERHFCLSIARLPRN-IKKLKHLRYLNLSNNDAIYEL---PEALCDLCNLQTLDVSNCGNLHALPQGIAK 537 (826)
Q Consensus 462 ~~Lr~L~L~~~~~~~~~~~~~lp~~-i~~l~~L~~L~Ls~~~~~~~l---p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~ 537 (826)
++|++|+|+ ++ .+..+|.. +.++++|++|+|++|. +..+ |..+..+++|++|++++|. +..+|..+..
T Consensus 28 ~~l~~L~L~-----~n-~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~ 99 (306)
T 2z66_A 28 SSATRLELE-----SN-KLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLG 99 (306)
T ss_dssp TTCCEEECC-----SS-CCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEET
T ss_pred CCCCEEECC-----CC-ccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCCc-cccChhhcCC
Confidence 689999999 55 56677765 6899999999999998 5443 6778889999999999998 5678888999
Q ss_pred ccCCCeeeecCcccccCCc--cCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhh
Q 003367 538 LINLRHLINEGTPLLYLPK--GLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAK 615 (826)
Q Consensus 538 L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~ 615 (826)
+++|++|++++|.+..++. .+..+++|++|++.++..... ....
T Consensus 100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------------------~~~~ 145 (306)
T 2z66_A 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA----------------------------------FNGI 145 (306)
T ss_dssp CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC----------------------------------STTT
T ss_pred CCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc----------------------------------chhh
Confidence 9999999999999998875 688889999887765543110 0011
Q ss_pred ccCCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC-C
Q 003367 616 LESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP-S 694 (826)
Q Consensus 616 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~ 694 (826)
+..+++|+.|+++.+.+.. ...+..+..+++|++|++++|.+.+.+|.++..+++|++|+|++|.+.+..+ .
T Consensus 146 ~~~l~~L~~L~l~~n~l~~-------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 218 (306)
T 2z66_A 146 FNGLSSLEVLKMAGNSFQE-------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 218 (306)
T ss_dssp TTTCTTCCEEECTTCEEGG-------GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGG
T ss_pred cccCcCCCEEECCCCcccc-------ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhh
Confidence 2233455555555444221 0123345555666666666666666656666666666666666666654433 4
Q ss_pred CCCCCccceeecccc
Q 003367 695 LGRLPSLESLVVEAL 709 (826)
Q Consensus 695 l~~l~~L~~L~L~~~ 709 (826)
+..+++|+.|+++++
T Consensus 219 ~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 219 YKCLNSLQVLDYSLN 233 (306)
T ss_dssp GTTCTTCCEEECTTS
T ss_pred ccCcccCCEeECCCC
Confidence 555666666666644
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=3.2e-18 Score=194.98 Aligned_cols=256 Identities=21% Similarity=0.207 Sum_probs=159.9
Q ss_pred CCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCCC
Q 003367 463 CLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINLR 542 (826)
Q Consensus 463 ~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~ 542 (826)
++++|+++ ++ .+..+|..+. ++|++|+|++|. +..+|. .+++|++|+|++|. +..+|. .+++|+
T Consensus 41 ~l~~L~ls-----~n-~L~~lp~~l~--~~L~~L~L~~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~ 104 (622)
T 3g06_A 41 GNAVLNVG-----ES-GLTTLPDCLP--AHITTLVIPDNN-LTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLL 104 (622)
T ss_dssp CCCEEECC-----SS-CCSCCCSCCC--TTCSEEEECSCC-CSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCC
T ss_pred CCcEEEec-----CC-CcCccChhhC--CCCcEEEecCCC-CCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCC
Confidence 46666666 33 4455565554 566666666666 555665 45666666666666 444554 556666
Q ss_pred eeeecCcccccCCccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCCcC
Q 003367 543 HLINEGTPLLYLPKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKHL 622 (826)
Q Consensus 543 ~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L 622 (826)
+|++++|.+..+|. .+++|+.|++.+|.... ++. .+..|..|..-. ..+..+. ....+|
T Consensus 105 ~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~-lp~--~l~~L~~L~Ls~-----N~l~~l~----------~~~~~L 163 (622)
T 3g06_A 105 ELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTS-LPV--LPPGLQELSVSD-----NQLASLP----------ALPSEL 163 (622)
T ss_dssp EEEECSCCCCCCCC---CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCS-----SCCSCCC----------CCCTTC
T ss_pred EEECcCCcCCCCCC---CCCCcCEEECCCCCCCc-CCC--CCCCCCEEECcC-----CcCCCcC----------CccCCC
Confidence 66666666666665 34556666655554321 111 112222221100 0011110 123467
Q ss_pred CceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCCCCCCCCccc
Q 003367 623 VCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLPSLGRLPSLE 702 (826)
Q Consensus 623 ~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~ 702 (826)
+.|.++.|.+.... ..+++|+.|++++|.+.++ |.. +++|+.|++++|.+.. +|. .+++|+
T Consensus 164 ~~L~L~~N~l~~l~------------~~~~~L~~L~Ls~N~l~~l-~~~---~~~L~~L~L~~N~l~~-l~~--~~~~L~ 224 (622)
T 3g06_A 164 CKLWAYNNQLTSLP------------MLPSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLTS-LPA--LPSGLK 224 (622)
T ss_dssp CEEECCSSCCSCCC------------CCCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSS-CCC--CCTTCC
T ss_pred CEEECCCCCCCCCc------------ccCCCCcEEECCCCCCCCC-CCc---cchhhEEECcCCcccc-cCC--CCCCCC
Confidence 77777776654321 3457899999999998886 543 4789999999988763 443 247899
Q ss_pred eeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCCCCCCC
Q 003367 703 SLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKLKA 782 (826)
Q Consensus 703 ~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 782 (826)
.|+++++. +.+.. ..+++|+.|++++| .+..++. .+++|+.|+|++| .++.
T Consensus 225 ~L~Ls~N~--------L~~lp----------~~l~~L~~L~Ls~N-~L~~lp~---------~~~~L~~L~Ls~N-~L~~ 275 (622)
T 3g06_A 225 ELIVSGNR--------LTSLP----------VLPSELKELMVSGN-RLTSLPM---------LPSGLLSLSVYRN-QLTR 275 (622)
T ss_dssp EEECCSSC--------CSCCC----------CCCTTCCEEECCSS-CCSCCCC---------CCTTCCEEECCSS-CCCS
T ss_pred EEEccCCc--------cCcCC----------CCCCcCcEEECCCC-CCCcCCc---------ccccCcEEeCCCC-CCCc
Confidence 99998543 22221 25788999999998 5555532 5789999999996 5778
Q ss_pred CCCCCcccCCcceEEEccccc
Q 003367 783 LPDHLLLTTKMNELTMNWCSV 803 (826)
Q Consensus 783 lp~~l~~l~~L~~L~l~~c~~ 803 (826)
+|..+..+++|+.|++++|+-
T Consensus 276 lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 276 LPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CCGGGGGSCTTCEEECCSCCC
T ss_pred CCHHHhhccccCEEEecCCCC
Confidence 998888899999999999874
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=2.3e-20 Score=196.99 Aligned_cols=256 Identities=16% Similarity=0.129 Sum_probs=146.4
Q ss_pred chhhhchhhhccCCCCcEEeccccccccccccccc-cccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCC
Q 003367 449 VADIALPSLFDRLTCLRTLCLRCHERHFCLSIARL-PRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGN 527 (826)
Q Consensus 449 ~l~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~ 527 (826)
.+...++..+..+++|++|+|+ +| .+..+ |..+..+++|++|+|++|. +...++ +..+++|++|++++|.
T Consensus 21 ~l~~~~~~~~~~~~~L~~L~L~-----~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~n~- 91 (317)
T 3o53_A 21 SLKQALASLRQSAWNVKELDLS-----GN-PLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY- 91 (317)
T ss_dssp THHHHHHHHHTTGGGCSEEECT-----TS-CCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCSSE-
T ss_pred chhhhHHHHhccCCCCCEEECc-----CC-ccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcCCc-
Confidence 3334445556677788888888 44 34444 3567888888888888887 444444 7788888888888887
Q ss_pred CcccchhhhcccCCCeeeecCcccccCCccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCC
Q 003367 528 LHALPQGIAKLINLRHLINEGTPLLYLPKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTD 607 (826)
Q Consensus 528 ~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~ 607 (826)
+..+| ..++|++|++++|.+..++.. .+++|++|++..+.....
T Consensus 92 l~~l~----~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~------------------------------ 135 (317)
T 3o53_A 92 VQELL----VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITML------------------------------ 135 (317)
T ss_dssp EEEEE----ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSG------------------------------
T ss_pred ccccc----CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCc------------------------------
Confidence 33343 347888888888887766543 356677776655443110
Q ss_pred hhhhhhhhccCCCcCCceeeEeecCCCcccccchHHHhhcC-CCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecC
Q 003367 608 VGEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNEVLEAL-QPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRC 686 (826)
Q Consensus 608 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l-~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~ 686 (826)
....+..+++|+.|+++.|.+.... +..+ ..+++|++|++++|.+... |.. ..+++|++|+|++|
T Consensus 136 ----~~~~~~~l~~L~~L~Ls~N~l~~~~--------~~~~~~~l~~L~~L~L~~N~l~~~-~~~-~~l~~L~~L~Ls~N 201 (317)
T 3o53_A 136 ----RDLDEGCRSRVQYLDLKLNEIDTVN--------FAELAASSDTLEHLNLQYNFIYDV-KGQ-VVFAKLKTLDLSSN 201 (317)
T ss_dssp ----GGBCTGGGSSEEEEECTTSCCCEEE--------GGGGGGGTTTCCEEECTTSCCCEE-ECC-CCCTTCCEEECCSS
T ss_pred ----cchhhhccCCCCEEECCCCCCCccc--------HHHHhhccCcCCEEECCCCcCccc-ccc-cccccCCEEECCCC
Confidence 0011223344555555555433211 1111 2346677777777766665 322 23667777777777
Q ss_pred CCCCCCCCCCCCCccceeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCC
Q 003367 687 GKCEQLPSLGRLPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIM 766 (826)
Q Consensus 687 ~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l 766 (826)
.+.+..+.+..+++|+.|+++++. +..++.. ...+++|+.|++++|+...... +..+..+
T Consensus 202 ~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~--------------~~~l~~L~~L~l~~N~~~~~~~-----~~~~~~~ 261 (317)
T 3o53_A 202 KLAFMGPEFQSAAGVTWISLRNNK-LVLIEKA--------------LRFSQNLEHFDLRGNGFHCGTL-----RDFFSKN 261 (317)
T ss_dssp CCCEECGGGGGGTTCSEEECTTSC-CCEECTT--------------CCCCTTCCEEECTTCCCBHHHH-----HHHHHTC
T ss_pred cCCcchhhhcccCcccEEECcCCc-ccchhhH--------------hhcCCCCCEEEccCCCccCcCH-----HHHHhcc
Confidence 666544456666677777776543 2222221 2245667777776664221110 1233456
Q ss_pred CccceeeecCCCCCCCC
Q 003367 767 PRLHRLKLDGCHKLKAL 783 (826)
Q Consensus 767 ~~L~~L~l~~c~~l~~l 783 (826)
++|+.|++++|+.++..
T Consensus 262 ~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 262 QRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp HHHHHHHHHHHHHHHSS
T ss_pred ccceEEECCCchhccCC
Confidence 66666666665555443
No 60
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.78 E-value=1.8e-18 Score=191.27 Aligned_cols=247 Identities=21% Similarity=0.229 Sum_probs=134.2
Q ss_pred CCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCcccccCCccCCCCCCCCcCCce
Q 003367 491 KHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPLLYLPKGLERLTCLRTLSEF 570 (826)
Q Consensus 491 ~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~ 570 (826)
++|++|++++|. +..+|.. +.+|++|++++|.+ ..+|.. .++|++|++++|.+..+| .++++++|++|++.
T Consensus 91 ~~L~~L~l~~n~-l~~lp~~---~~~L~~L~l~~n~l-~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~ 161 (454)
T 1jl5_A 91 PHLESLVASCNS-LTELPEL---PQSLKSLLVDNNNL-KALSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVD 161 (454)
T ss_dssp TTCSEEECCSSC-CSSCCCC---CTTCCEEECCSSCC-SCCCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECC
T ss_pred CCCCEEEccCCc-CCccccc---cCCCcEEECCCCcc-CcccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECC
Confidence 455666666655 3345532 25566666666653 233321 146777777777777766 47777777777766
Q ss_pred eeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCCcCCceeeEeecCCCcccccchHHHhhcCCC
Q 003367 571 TVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQP 650 (826)
Q Consensus 571 ~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~ 650 (826)
++.... ++. .+..|+.|.--.+ . +..+ ..+..+++|+.|+++.|.+.... ..
T Consensus 162 ~N~l~~-lp~--~~~~L~~L~L~~n-----~---l~~l-----~~~~~l~~L~~L~l~~N~l~~l~------------~~ 213 (454)
T 1jl5_A 162 NNSLKK-LPD--LPPSLEFIAAGNN-----Q---LEEL-----PELQNLPFLTAIYADNNSLKKLP------------DL 213 (454)
T ss_dssp SSCCSC-CCC--CCTTCCEEECCSS-----C---CSSC-----CCCTTCTTCCEEECCSSCCSSCC------------CC
T ss_pred CCcCcc-cCC--CcccccEEECcCC-----c---CCcC-----ccccCCCCCCEEECCCCcCCcCC------------CC
Confidence 654421 111 1122222211100 0 1110 12556677777777766643211 01
Q ss_pred CCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCCCCCCCCccceeeccccccceEeCcccccCCCCccccC
Q 003367 651 SPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLPSLGRLPSLESLVVEALSSVRRVGNEFLGIESDDISLS 730 (826)
Q Consensus 651 ~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 730 (826)
+++|++|++++|.+..+ |. +..+++|++|++++|.+.+ +|. .+++|+.|+++++. +.+...
T Consensus 214 ~~~L~~L~l~~n~l~~l-p~-~~~l~~L~~L~l~~N~l~~-l~~--~~~~L~~L~l~~N~--------l~~l~~------ 274 (454)
T 1jl5_A 214 PLSLESIVAGNNILEEL-PE-LQNLPFLTTIYADNNLLKT-LPD--LPPSLEALNVRDNY--------LTDLPE------ 274 (454)
T ss_dssp CTTCCEEECCSSCCSSC-CC-CTTCTTCCEEECCSSCCSS-CCS--CCTTCCEEECCSSC--------CSCCCC------
T ss_pred cCcccEEECcCCcCCcc-cc-cCCCCCCCEEECCCCcCCc-ccc--cccccCEEECCCCc--------ccccCc------
Confidence 24777888887777755 53 6777788888888777664 442 23677777777543 221111
Q ss_pred ccCcCCCccceeeccccccccccccc---c-----cc--ccCcCCC-CccceeeecCCCCCCCCCCCCcccCCcceEEEc
Q 003367 731 SSSVVFPKLKFLEFRDMDEWEEWDYV---I-----SG--QKDIKIM-PRLHRLKLDGCHKLKALPDHLLLTTKMNELTMN 799 (826)
Q Consensus 731 ~~~~~~~~L~~L~l~~~~~l~~~~~~---~-----~~--~~~~~~l-~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~ 799 (826)
.+++|++|++++|. +..++.. + +. -..+..+ ++|+.|++++| .+..+|.. +++|+.|+++
T Consensus 275 ----~~~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~l~~lp~~---~~~L~~L~L~ 345 (454)
T 1jl5_A 275 ----LPQSLTFLDVSENI-FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPAL---PPRLERLIAS 345 (454)
T ss_dssp ----CCTTCCEEECCSSC-CSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCCCC---CTTCCEEECC
T ss_pred ----ccCcCCEEECcCCc-cCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCC-cccccccc---CCcCCEEECC
Confidence 23566666666652 2221100 0 00 0011223 58999999985 46678864 4789999998
Q ss_pred ccc
Q 003367 800 WCS 802 (826)
Q Consensus 800 ~c~ 802 (826)
+|.
T Consensus 346 ~N~ 348 (454)
T 1jl5_A 346 FNH 348 (454)
T ss_dssp SSC
T ss_pred CCc
Confidence 874
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=3e-19 Score=199.61 Aligned_cols=128 Identities=15% Similarity=0.127 Sum_probs=72.2
Q ss_pred CCCCCcCeEEEeccCCCCCCCCccc-CccCCcEEEEecCCCCCCCCCCCCCCccceeeccccccceEeCcccccCCCCcc
Q 003367 649 QPSPDLEKLTICDYKSKIISPSWLM-SLTELRMLNLQRCGKCEQLPSLGRLPSLESLVVEALSSVRRVGNEFLGIESDDI 727 (826)
Q Consensus 649 ~~~~~L~~L~L~~~~~~~~~p~~l~-~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 727 (826)
..+++|+.|+|++|.+.+.+|..+. .+++|+.|+|++|.+.+. |....+++|+.|+|+++. +..++..
T Consensus 141 ~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~--------- 209 (487)
T 3oja_A 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNK-LAFMGPE--------- 209 (487)
T ss_dssp GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSC-CCEECGG---------
T ss_pred cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cccccCCCCCEEECCCCC-CCCCCHh---------
Confidence 3456677777777777665555554 567777777777766543 444456677777776543 2222211
Q ss_pred ccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCCCCC-CCCCCCCcccCCcceEEEc
Q 003367 728 SLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKL-KALPDHLLLTTKMNELTMN 799 (826)
Q Consensus 728 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l-~~lp~~l~~l~~L~~L~l~ 799 (826)
+..+++|+.|++++| .+..++ ..+..+++|+.|++++|+.. ..+|..+..++.|+.+++.
T Consensus 210 -----~~~l~~L~~L~Ls~N-~l~~lp------~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 210 -----FQSAAGVTWISLRNN-KLVLIE------KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp -----GGGGTTCSEEECTTS-CCCEEC------TTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred -----HcCCCCccEEEecCC-cCcccc------hhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 224566777777666 343332 23455666777777766544 2444444445555555554
No 62
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.78 E-value=3.3e-18 Score=199.65 Aligned_cols=106 Identities=22% Similarity=0.190 Sum_probs=90.6
Q ss_pred CCCcEEecccccccccccccccc-ccccCCCCccEEEccCCCCccccc-hhhcCCCCCcEEeccCCCCCcccchhhhccc
Q 003367 462 TCLRTLCLRCHERHFCLSIARLP-RNIKKLKHLRYLNLSNNDAIYELP-EALCDLCNLQTLDVSNCGNLHALPQGIAKLI 539 (826)
Q Consensus 462 ~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~l~~L~~L~Ls~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~ 539 (826)
+++++|||+ +| .+..+| .+|.++++|++|+|++|. +..+| ..|.+|++|++|+|++|.+.+..|..|.+++
T Consensus 52 ~~~~~LdLs-----~N-~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 52 FSTKNLDLS-----FN-PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 124 (635)
T ss_dssp TTCCEEECT-----TS-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT
T ss_pred cCCCEEEee-----CC-CCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC
Confidence 479999999 55 566665 579999999999999999 66555 5799999999999999995444446789999
Q ss_pred CCCeeeecCcccccCCcc-CCCCCCCCcCCceeeCc
Q 003367 540 NLRHLINEGTPLLYLPKG-LERLTCLRTLSEFTVSD 574 (826)
Q Consensus 540 ~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~ 574 (826)
+|++|++++|.+..+|.. ++++++|++|++..+..
T Consensus 125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l 160 (635)
T 4g8a_A 125 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 160 (635)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCCCChhhhhcCcccCeeccccCcc
Confidence 999999999999998875 89999999999988765
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=2.2e-19 Score=189.46 Aligned_cols=247 Identities=15% Similarity=0.076 Sum_probs=162.6
Q ss_pred cccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCcccccCCccCCCCCCCC
Q 003367 486 NIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPLLYLPKGLERLTCLR 565 (826)
Q Consensus 486 ~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~ 565 (826)
.+..+++|++|+|++|.+....|..+.++++|++|++++|.+.+..| +..+++|++|++++|.+..+|. .++|+
T Consensus 29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~----~~~L~ 102 (317)
T 3o53_A 29 LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIE 102 (317)
T ss_dssp HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEE----CTTCC
T ss_pred HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccC----CCCcC
Confidence 34567799999999998555555789999999999999998655444 8899999999999999887764 37788
Q ss_pred cCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCCcCCceeeEeecCCCcccccchHHHh
Q 003367 566 TLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNEVL 645 (826)
Q Consensus 566 ~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 645 (826)
+|++..+.... +. ...+++|+.|+++.|.+... ..
T Consensus 103 ~L~l~~n~l~~--------------------~~-----------------~~~~~~L~~L~l~~N~l~~~--------~~ 137 (317)
T 3o53_A 103 TLHAANNNISR--------------------VS-----------------CSRGQGKKNIYLANNKITML--------RD 137 (317)
T ss_dssp EEECCSSCCSE--------------------EE-----------------ECCCSSCEEEECCSSCCCSG--------GG
T ss_pred EEECCCCccCC--------------------cC-----------------ccccCCCCEEECCCCCCCCc--------cc
Confidence 88776554311 00 01123456666666654322 12
Q ss_pred hcCCCCCCcCeEEEeccCCCCCCCCcc-cCccCCcEEEEecCCCCCCCCCCCCCCccceeeccccccceEeCcccccCCC
Q 003367 646 EALQPSPDLEKLTICDYKSKIISPSWL-MSLTELRMLNLQRCGKCEQLPSLGRLPSLESLVVEALSSVRRVGNEFLGIES 724 (826)
Q Consensus 646 ~~l~~~~~L~~L~L~~~~~~~~~p~~l-~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 724 (826)
..+..+++|++|++++|.+....|..+ ..+++|++|+|++|.+.+. +....+++|+.|+|+++. +..++..
T Consensus 138 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~-l~~l~~~------ 209 (317)
T 3o53_A 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNK-LAFMGPE------ 209 (317)
T ss_dssp BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSC-CCEECGG------
T ss_pred hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-ccccccccCCEEECCCCc-CCcchhh------
Confidence 234456777888888777777655555 3677788888887776543 444457777777777554 2222222
Q ss_pred CccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCCCCC-CCCCCCCcccCCcceEEEccccc
Q 003367 725 DDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKL-KALPDHLLLTTKMNELTMNWCSV 803 (826)
Q Consensus 725 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l-~~lp~~l~~l~~L~~L~l~~c~~ 803 (826)
...+++|++|++++| .+..++ ..+..+++|+.|++++|+.. ..+|..+..++.|+.|++.+|+.
T Consensus 210 --------~~~l~~L~~L~L~~N-~l~~l~------~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~ 274 (317)
T 3o53_A 210 --------FQSAAGVTWISLRNN-KLVLIE------KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKK 274 (317)
T ss_dssp --------GGGGTTCSEEECTTS-CCCEEC------TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --------hcccCcccEEECcCC-cccchh------hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchh
Confidence 225677777777777 444443 34556777777777776644 35555556667777777776666
Q ss_pred hHH
Q 003367 804 LKE 806 (826)
Q Consensus 804 l~~ 806 (826)
++.
T Consensus 275 l~~ 277 (317)
T 3o53_A 275 LTG 277 (317)
T ss_dssp HHS
T ss_pred ccC
Confidence 554
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=2.3e-19 Score=186.47 Aligned_cols=176 Identities=20% Similarity=0.184 Sum_probs=99.3
Q ss_pred CCCcEEecccccccccccccccc-ccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCccc-chhhhccc
Q 003367 462 TCLRTLCLRCHERHFCLSIARLP-RNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHAL-PQGIAKLI 539 (826)
Q Consensus 462 ~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~ 539 (826)
++|++|+++ ++ .+..+| ..+..+++|++|+|++|.+.+..|..+.++++|++|++++|..++.+ |..+..++
T Consensus 32 ~~l~~L~l~-----~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~ 105 (285)
T 1ozn_A 32 AASQRIFLH-----GN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105 (285)
T ss_dssp TTCSEEECT-----TS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCT
T ss_pred CCceEEEee-----CC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCc
Confidence 466677776 33 333443 44666677777777776633333556666777777777766523333 55666667
Q ss_pred CCCeeeecCcccccC-CccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccC
Q 003367 540 NLRHLINEGTPLLYL-PKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLES 618 (826)
Q Consensus 540 ~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~ 618 (826)
+|++|++++|.+..+ |..+.++++|++|++.++..
T Consensus 106 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-------------------------------------------- 141 (285)
T 1ozn_A 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL-------------------------------------------- 141 (285)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC--------------------------------------------
T ss_pred CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcc--------------------------------------------
Confidence 777777776666655 33456666666665544332
Q ss_pred CCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC-CCCC
Q 003367 619 KKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP-SLGR 697 (826)
Q Consensus 619 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~ 697 (826)
.... ...+..+++|++|++++|.+..+++.++..+++|++|+|++|.+.+..| .++.
T Consensus 142 --------------~~~~--------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 199 (285)
T 1ozn_A 142 --------------QALP--------DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199 (285)
T ss_dssp --------------CCCC--------TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred --------------cccC--------HhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccC
Confidence 1000 0123344556666666666655544455566666666666666555444 5555
Q ss_pred CCccceeecccc
Q 003367 698 LPSLESLVVEAL 709 (826)
Q Consensus 698 l~~L~~L~L~~~ 709 (826)
+++|+.|+++++
T Consensus 200 l~~L~~L~l~~n 211 (285)
T 1ozn_A 200 LGRLMTLYLFAN 211 (285)
T ss_dssp CTTCCEEECCSS
T ss_pred cccccEeeCCCC
Confidence 666666666543
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=3.2e-18 Score=177.85 Aligned_cols=220 Identities=16% Similarity=0.069 Sum_probs=146.8
Q ss_pred cEEeccccccccccccccccccccCCCCccEEEccCCCCccccc-hhhcCCCCCcEEeccCCCCCcccchhhhcccCCCe
Q 003367 465 RTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELP-EALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRH 543 (826)
Q Consensus 465 r~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 543 (826)
++++.+ +. .+..+|..+ .++|++|+|++|. +..+| ..+.++++|++|++++|.+.+..|..+..+++|++
T Consensus 14 ~~~~c~-----~~-~l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 84 (285)
T 1ozn_A 14 VTTSCP-----QQ-GLQAVPVGI--PAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQ 84 (285)
T ss_dssp CEEECC-----SS-CCSSCCTTC--CTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred eEEEcC-----cC-CcccCCcCC--CCCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCE
Confidence 566665 33 566677544 4688899998888 44444 56888888999999888866666778888888888
Q ss_pred eeecCcc-cccC-CccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCCc
Q 003367 544 LINEGTP-LLYL-PKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKH 621 (826)
Q Consensus 544 L~l~~~~-l~~l-p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~ 621 (826)
|++++|. +..+ |..+..+++|++|++.++.....
T Consensus 85 L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------------------------------------- 120 (285)
T 1ozn_A 85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL-------------------------------------------- 120 (285)
T ss_dssp EECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCC--------------------------------------------
T ss_pred EeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEE--------------------------------------------
Confidence 8888886 6666 45577777777776544332000
Q ss_pred CCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC-CCCCCCc
Q 003367 622 LVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP-SLGRLPS 700 (826)
Q Consensus 622 L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~l~~ 700 (826)
.+..+..+++|++|++++|.+...++..+..+++|++|+|++|.+.+..+ .+..+++
T Consensus 121 ----------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 178 (285)
T 1ozn_A 121 ----------------------GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178 (285)
T ss_dssp ----------------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred ----------------------CHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccc
Confidence 01224456778888888888887766667888888888888887765544 4777888
Q ss_pred cceeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCCCC
Q 003367 701 LESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHK 779 (826)
Q Consensus 701 L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 779 (826)
|+.|+++++..-...+. .+..+++|+.|++++| .+..++. ..+..+++|+.|++++|+.
T Consensus 179 L~~L~l~~n~l~~~~~~--------------~~~~l~~L~~L~l~~n-~l~~~~~-----~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 179 LDRLLLHQNRVAHVHPH--------------AFRDLGRLMTLYLFAN-NLSALPT-----EALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp CCEEECCSSCCCEECTT--------------TTTTCTTCCEEECCSS-CCSCCCH-----HHHTTCTTCCEEECCSSCE
T ss_pred cCEEECCCCcccccCHh--------------HccCcccccEeeCCCC-cCCcCCH-----HHcccCcccCEEeccCCCc
Confidence 88888876542111111 1235677777777777 3443321 2345677777777777654
No 66
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=6.4e-19 Score=189.23 Aligned_cols=253 Identities=18% Similarity=0.141 Sum_probs=186.2
Q ss_pred ccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccch-hhcCCCCCcEEeccCCCCCcccchhhhc
Q 003367 459 DRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPE-ALCDLCNLQTLDVSNCGNLHALPQGIAK 537 (826)
Q Consensus 459 ~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~ 537 (826)
..|+...+.+++ ++ .+..+|..+. ++|++|++++|. +..+|. .+.++++|++|++++|.+.+..|..+.+
T Consensus 28 ~~C~~~~~c~~~-----~~-~l~~iP~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (353)
T 2z80_A 28 LSCDRNGICKGS-----SG-SLNSIPSGLT--EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS 98 (353)
T ss_dssp CEECTTSEEECC-----ST-TCSSCCTTCC--TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred CCCCCCeEeeCC-----CC-Cccccccccc--ccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCccCccCHhhcCC
Confidence 344555567776 44 6778887665 589999999999 566654 7999999999999999876666778999
Q ss_pred ccCCCeeeecCcccccCCcc-CCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhc
Q 003367 538 LINLRHLINEGTPLLYLPKG-LERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKL 616 (826)
Q Consensus 538 L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l 616 (826)
+++|++|++++|.+..+|.. ++++++|++|++.++.... +.
T Consensus 99 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----------------l~---------------------- 140 (353)
T 2z80_A 99 LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT----------------LG---------------------- 140 (353)
T ss_dssp CTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS----------------SC----------------------
T ss_pred CCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc----------------cC----------------------
Confidence 99999999999999988876 7888889888776553310 00
Q ss_pred cCCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEecc-CCCCCCCCcccCccCCcEEEEecCCCCCCCC-C
Q 003367 617 ESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDY-KSKIISPSWLMSLTELRMLNLQRCGKCEQLP-S 694 (826)
Q Consensus 617 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~-~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~ 694 (826)
....+..+++|++|++++| .+...+|..+..+++|++|++++|.+.+..| .
T Consensus 141 ---------------------------~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 193 (353)
T 2z80_A 141 ---------------------------ETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS 193 (353)
T ss_dssp ---------------------------SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred ---------------------------chhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHH
Confidence 0012445678999999998 4677767889999999999999999988766 8
Q ss_pred CCCCCccceeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeee
Q 003367 695 LGRLPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKL 774 (826)
Q Consensus 695 l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l 774 (826)
++.+++|++|+++++. +..++..+ ...+++|+.|++++| .+..+.. .........+.++.+++
T Consensus 194 l~~l~~L~~L~l~~n~-l~~~~~~~-------------~~~~~~L~~L~L~~n-~l~~~~~--~~l~~~~~~~~l~~l~L 256 (353)
T 2z80_A 194 LKSIQNVSHLILHMKQ-HILLLEIF-------------VDVTSSVECLELRDT-DLDTFHF--SELSTGETNSLIKKFTF 256 (353)
T ss_dssp TTTCSEEEEEEEECSC-STTHHHHH-------------HHHTTTEEEEEEESC-BCTTCCC--C------CCCCCCEEEE
T ss_pred HhccccCCeecCCCCc-cccchhhh-------------hhhcccccEEECCCC-ccccccc--cccccccccchhhcccc
Confidence 9999999999998654 22111111 124789999999998 4444322 00111234667888888
Q ss_pred cCCCCC----CCCCCCCcccCCcceEEEcccc
Q 003367 775 DGCHKL----KALPDHLLLTTKMNELTMNWCS 802 (826)
Q Consensus 775 ~~c~~l----~~lp~~l~~l~~L~~L~l~~c~ 802 (826)
+++..- ..+|..+..+++|+.|++++|.
T Consensus 257 ~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 257 RNVKITDESLFQVMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp ESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred ccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence 886432 2467677788999999999984
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=3.4e-20 Score=195.28 Aligned_cols=61 Identities=18% Similarity=0.097 Sum_probs=41.2
Q ss_pred CCCCCcCeEEEeccCCCCCC--C-CcccCccCCcEEEEecCCCCCCCC--CCCCCCccceeecccc
Q 003367 649 QPSPDLEKLTICDYKSKIIS--P-SWLMSLTELRMLNLQRCGKCEQLP--SLGRLPSLESLVVEAL 709 (826)
Q Consensus 649 ~~~~~L~~L~L~~~~~~~~~--p-~~l~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~ 709 (826)
..+++|++|++++|.+.... + ..+..+++|++|+|++|.+.+..| .+..+++|+.|+|+++
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N 263 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC
Confidence 56678888888888877431 1 233466788888888888776553 4555667777777643
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=2e-19 Score=200.97 Aligned_cols=238 Identities=15% Similarity=0.125 Sum_probs=155.8
Q ss_pred ccCCCCcEEeccccccccccccccc-cccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhc
Q 003367 459 DRLTCLRTLCLRCHERHFCLSIARL-PRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAK 537 (826)
Q Consensus 459 ~~l~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~ 537 (826)
..+++|++|+|+ +| .+..+ |..|+.+++|++|+|++|. +...++ ++.+++|++|+|++|. +..+| .
T Consensus 31 ~~~~~L~~L~Ls-----~n-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~----~ 97 (487)
T 3oja_A 31 QSAWNVKELDLS-----GN-PLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-VQELL----V 97 (487)
T ss_dssp TTGGGCCEEECC-----SS-CCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSE-EEEEE----E
T ss_pred ccCCCccEEEee-----CC-cCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCc-CCCCC----C
Confidence 344478888888 44 34444 4678888888888888888 444443 8888888888888887 44444 2
Q ss_pred ccCCCeeeecCcccccCCccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhcc
Q 003367 538 LINLRHLINEGTPLLYLPKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLE 617 (826)
Q Consensus 538 L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~ 617 (826)
.++|++|++++|.+..+|.. .+++|+.|++.++..... ....+.
T Consensus 98 ~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~----------------------------------~~~~~~ 141 (487)
T 3oja_A 98 GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITML----------------------------------RDLDEG 141 (487)
T ss_dssp CTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSG----------------------------------GGBCGG
T ss_pred CCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCC----------------------------------Cchhhc
Confidence 37888888888888766653 456777776665543111 011233
Q ss_pred CCCcCCceeeEeecCCCcccccchHHHhhcCC-CCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCCCCC
Q 003367 618 SKKHLVCLRLEFIKLGRVELVDKDNEVLEALQ-PSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLPSLG 696 (826)
Q Consensus 618 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~-~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~ 696 (826)
.+++|+.|+++.|.++.. .+..+. .+++|++|+|++|.+.+. |. ...+++|+.|+|++|.+.+..|.++
T Consensus 142 ~l~~L~~L~Ls~N~l~~~--------~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~ 211 (487)
T 3oja_A 142 CRSRVQYLDLKLNEIDTV--------NFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQ 211 (487)
T ss_dssp GGSSEEEEECTTSCCCEE--------EGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGG
T ss_pred CCCCCCEEECCCCCCCCc--------ChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCCCHhHc
Confidence 445666667766664422 122332 467888889988888876 43 3358888889998888877666788
Q ss_pred CCCccceeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeec
Q 003367 697 RLPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLD 775 (826)
Q Consensus 697 ~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~ 775 (826)
.+++|+.|+|+++. +..++.. ...+++|+.|++++|+..... . +..+..+++|+.|+++
T Consensus 212 ~l~~L~~L~Ls~N~-l~~lp~~--------------l~~l~~L~~L~l~~N~l~c~~-~----~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 212 SAAGVTWISLRNNK-LVLIEKA--------------LRFSQNLEHFDLRGNGFHCGT-L----RDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp GGTTCSEEECTTSC-CCEECTT--------------CCCCTTCCEEECTTCCBCHHH-H----HHHHTTCHHHHHHHHH
T ss_pred CCCCccEEEecCCc-Ccccchh--------------hccCCCCCEEEcCCCCCcCcc-h----HHHHHhCCCCcEEecc
Confidence 88888888888654 2222221 235788888888888533111 1 2334567888888876
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=5.3e-17 Score=184.95 Aligned_cols=241 Identities=19% Similarity=0.135 Sum_probs=167.0
Q ss_pred CCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCC
Q 003367 462 TCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINL 541 (826)
Q Consensus 462 ~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L 541 (826)
++|++|+|+ +| .+..+|. .+++|++|+|++|. ++.+|. .+++|++|++++|. +..+|. .+++|
T Consensus 61 ~~L~~L~L~-----~N-~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~l~~---~l~~L 123 (622)
T 3g06_A 61 AHITTLVIP-----DN-NLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFSNP-LTHLPA---LPSGL 123 (622)
T ss_dssp TTCSEEEEC-----SC-CCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECSCC-CCCCCC---CCTTC
T ss_pred CCCcEEEec-----CC-CCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcCCc-CCCCCC---CCCCc
Confidence 688888888 44 5556665 56888888888888 677876 67888888888887 455665 56788
Q ss_pred CeeeecCcccccCCccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCCc
Q 003367 542 RHLINEGTPLLYLPKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKH 621 (826)
Q Consensus 542 ~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~ 621 (826)
++|++++|.+..+|.. +++|++|++..|.... ++ ..+..|..|..-.+ .+..+. ..+++
T Consensus 124 ~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~-l~--~~~~~L~~L~L~~N-----~l~~l~----------~~~~~ 182 (622)
T 3g06_A 124 CKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LP--ALPSELCKLWAYNN-----QLTSLP----------MLPSG 182 (622)
T ss_dssp CEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CC--CCCTTCCEEECCSS-----CCSCCC----------CCCTT
T ss_pred CEEECCCCCCCcCCCC---CCCCCEEECcCCcCCC-cC--CccCCCCEEECCCC-----CCCCCc----------ccCCC
Confidence 8888888888888875 3778888877765421 11 12233333321111 111111 23577
Q ss_pred CCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCCCCCCCCcc
Q 003367 622 LVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLPSLGRLPSL 701 (826)
Q Consensus 622 L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L 701 (826)
|+.|+++.|.+.... ..+++|+.|++++|.+..+ |.. +++|+.|+|++|.+.+ +| ..+++|
T Consensus 183 L~~L~Ls~N~l~~l~------------~~~~~L~~L~L~~N~l~~l-~~~---~~~L~~L~Ls~N~L~~-lp--~~l~~L 243 (622)
T 3g06_A 183 LQELSVSDNQLASLP------------TLPSELYKLWAYNNRLTSL-PAL---PSGLKELIVSGNRLTS-LP--VLPSEL 243 (622)
T ss_dssp CCEEECCSSCCSCCC------------CCCTTCCEEECCSSCCSSC-CCC---CTTCCEEECCSSCCSC-CC--CCCTTC
T ss_pred CcEEECCCCCCCCCC------------CccchhhEEECcCCccccc-CCC---CCCCCEEEccCCccCc-CC--CCCCcC
Confidence 888888888755322 1247899999999999887 543 5889999999998875 55 566899
Q ss_pred ceeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCCCCCC
Q 003367 702 ESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKLK 781 (826)
Q Consensus 702 ~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 781 (826)
+.|+|+++. +..... .+++|+.|++++| .+..++ ..+..+++|+.|+|++|+...
T Consensus 244 ~~L~Ls~N~--------L~~lp~----------~~~~L~~L~Ls~N-~L~~lp------~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 244 KELMVSGNR--------LTSLPM----------LPSGLLSLSVYRN-QLTRLP------ESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp CEEECCSSC--------CSCCCC----------CCTTCCEEECCSS-CCCSCC------GGGGGSCTTCEEECCSCCCCH
T ss_pred cEEECCCCC--------CCcCCc----------ccccCcEEeCCCC-CCCcCC------HHHhhccccCEEEecCCCCCC
Confidence 999998653 222211 4688999999998 566553 356789999999999987654
Q ss_pred CCC
Q 003367 782 ALP 784 (826)
Q Consensus 782 ~lp 784 (826)
..|
T Consensus 299 ~~~ 301 (622)
T 3g06_A 299 RTL 301 (622)
T ss_dssp HHH
T ss_pred cCH
Confidence 333
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.73 E-value=2.8e-18 Score=180.58 Aligned_cols=202 Identities=19% Similarity=0.155 Sum_probs=116.0
Q ss_pred CcEEecccccccccccccccccccc-------CCCCccEEEccCCCCccccchhh--cCCCCCcEEeccCCCCCcccchh
Q 003367 464 LRTLCLRCHERHFCLSIARLPRNIK-------KLKHLRYLNLSNNDAIYELPEAL--CDLCNLQTLDVSNCGNLHALPQG 534 (826)
Q Consensus 464 Lr~L~L~~~~~~~~~~~~~lp~~i~-------~l~~L~~L~Ls~~~~~~~lp~~i--~~L~~L~~L~L~~~~~~~~lp~~ 534 (826)
|++|+|++|.+.. ..+|..+. .+++|++|+|++|.+.+.+|..+ ..+++|++|++++|.+.+. |..
T Consensus 65 L~~L~L~~n~l~~----~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~ 139 (312)
T 1wwl_A 65 IKSLSLKRLTVRA----ARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAW 139 (312)
T ss_dssp HHHCCCCEEEEEE----EECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSH
T ss_pred HhhcccccccccC----CCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHH
Confidence 6677777433321 12444443 57777777777777555677665 7777777777777774444 666
Q ss_pred hhcc-----cCCCeeeecCcccccCC-ccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCCh
Q 003367 535 IAKL-----INLRHLINEGTPLLYLP-KGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDV 608 (826)
Q Consensus 535 i~~L-----~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~ 608 (826)
++.+ ++|++|++++|.+..++ ..++++++|++|++.++......
T Consensus 140 ~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------------------------------ 189 (312)
T 1wwl_A 140 LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER------------------------------ 189 (312)
T ss_dssp HHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHH------------------------------
T ss_pred HHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcch------------------------------
Confidence 7666 77777777777777665 45777777777766655431100
Q ss_pred hhhhhhhccCCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCC-CcccCccCCcEEEEecCC
Q 003367 609 GEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISP-SWLMSLTELRMLNLQRCG 687 (826)
Q Consensus 609 ~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p-~~l~~l~~L~~L~L~~~~ 687 (826)
.......+..+++|+.|+++.|.+.... ......+..+++|++|++++|.+.+.+| ..+..+++|++|+|++|.
T Consensus 190 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 190 GLISALCPLKFPTLQVLALRNAGMETPS-----GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp HHHHHSCTTSCTTCCEEECTTSCCCCHH-----HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred HHHHHHHhccCCCCCEEECCCCcCcchH-----HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence 0000001134455666666655543111 1111222345677777777777766543 344556777777777777
Q ss_pred CCCCCC-CCCCCCccceeeccc
Q 003367 688 KCEQLP-SLGRLPSLESLVVEA 708 (826)
Q Consensus 688 ~~~~l~-~l~~l~~L~~L~L~~ 708 (826)
+. .+| .+. ++|+.|+|++
T Consensus 265 l~-~ip~~~~--~~L~~L~Ls~ 283 (312)
T 1wwl_A 265 LK-QVPKGLP--AKLSVLDLSY 283 (312)
T ss_dssp CS-SCCSSCC--SEEEEEECCS
T ss_pred cC-hhhhhcc--CCceEEECCC
Confidence 65 444 333 5566666653
No 71
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=2.2e-20 Score=208.94 Aligned_cols=344 Identities=21% Similarity=0.111 Sum_probs=198.5
Q ss_pred CcceEEEEEecCCCCccccCCcccchhhhchhhhccCCCCcEEeccccccccccccccccccccCCC-CccEEEccCCCC
Q 003367 425 TKLRSLSIVHKSNSSTIFPGIRDSVADIALPSLFDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLK-HLRYLNLSNNDA 503 (826)
Q Consensus 425 ~~lr~l~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~-~L~~L~Ls~~~~ 503 (826)
+.++.++++.+.... .....++..+..+++|++|+|++|.+... ....+...+.... +|++|+|++|.+
T Consensus 28 ~~L~~L~L~~~~l~~---------~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~~L~~L~L~~n~i 97 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTE---------ARCKDISSALRVNPALAELNLRSNELGDV-GVHCVLQGLQTPSCKIQKLSLQNCCL 97 (461)
T ss_dssp TTCSEEEEESSCCCH---------HHHHHHHHHHHTCTTCCEEECTTCCCHHH-HHHHHHHTTCSTTCCCCEEECTTSCC
T ss_pred CCccEEEccCCCCCH---------HHHHHHHHHHHhCCCcCEEeCCCCcCChH-HHHHHHHHHhhCCCceeEEEccCCCC
Confidence 456777777663211 00112356677888888888885443211 1111112222111 688888888874
Q ss_pred cc----ccchhhcCCCCCcEEeccCCCCCcccchhhhc-----ccCCCeeeecCccccc-----CCccCCCCCCCCcCCc
Q 003367 504 IY----ELPEALCDLCNLQTLDVSNCGNLHALPQGIAK-----LINLRHLINEGTPLLY-----LPKGLERLTCLRTLSE 569 (826)
Q Consensus 504 ~~----~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~-----L~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~~ 569 (826)
.. .+|..+..+++|++|++++|.+....+..+.. .++|++|++++|.+.. ++..+..+++|++|++
T Consensus 98 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 177 (461)
T 1z7x_W 98 TGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 177 (461)
T ss_dssp BGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEEC
T ss_pred CHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEEC
Confidence 32 56777888888888888888854433433332 4578888888887763 3555667788888888
Q ss_pred eeeCcccCcCcccCcc-----cccccccCCCceEEcccCCCCC-hhhhhhhhccCCCcCCceeeEeecCCCcccccchHH
Q 003367 570 FTVSDIENVSKAGSLQ-----CLQNLNHLQGSLVLTALGNVTD-VGEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNE 643 (826)
Q Consensus 570 ~~~~~~~~~~~~~~l~-----~L~~L~~L~~~l~~~~l~~~~~-~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~ 643 (826)
.++..... ....+. ....|.. +.+... .+.. ........+..+++|+.|+++.+.++.... ..
T Consensus 178 ~~n~i~~~--~~~~l~~~l~~~~~~L~~----L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~----~~ 246 (461)
T 1z7x_W 178 SNNDINEA--GVRVLCQGLKDSPCQLEA----LKLESC-GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM----AE 246 (461)
T ss_dssp CSSBCHHH--HHHHHHHHHHHSCCCCCE----EECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH----HH
T ss_pred cCCCcchH--HHHHHHHHHhcCCCCceE----EEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH----HH
Confidence 77654211 111110 0112221 111111 1111 111234456677888888888876532211 11
Q ss_pred Hhh-cCCCCCCcCeEEEeccCCCCC----CCCcccCccCCcEEEEecCCCCCCCC-C-----CCCCCccceeeccccccc
Q 003367 644 VLE-ALQPSPDLEKLTICDYKSKII----SPSWLMSLTELRMLNLQRCGKCEQLP-S-----LGRLPSLESLVVEALSSV 712 (826)
Q Consensus 644 ~~~-~l~~~~~L~~L~L~~~~~~~~----~p~~l~~l~~L~~L~L~~~~~~~~l~-~-----l~~l~~L~~L~L~~~~~l 712 (826)
+.. ....+++|++|++++|.+... ++..+..+++|++|+|++|.+.+..+ . ....++|+.|++++|. +
T Consensus 247 l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l 325 (461)
T 1z7x_W 247 LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-F 325 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-C
T ss_pred HHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC-C
Confidence 112 233578999999999988762 26667778999999999998753211 1 1234689999998765 2
Q ss_pred eEeCcccccCCCCccccCccCcCCCccceeecccccccccccc-ccccccCcC-CCCccceeeecCCCCCC----CCCCC
Q 003367 713 RRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDY-VISGQKDIK-IMPRLHRLKLDGCHKLK----ALPDH 786 (826)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~~-~l~~L~~L~l~~c~~l~----~lp~~ 786 (826)
...+.. .++.....+++|++|++++| .+..... .+ ...+. ..++|+.|++++|..-. .+|..
T Consensus 326 ~~~~~~---------~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l--~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 393 (461)
T 1z7x_W 326 TAACCS---------HFSSVLAQNRFLLELQISNN-RLEDAGVREL--CQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 393 (461)
T ss_dssp BGGGHH---------HHHHHHHHCSSCCEEECCSS-BCHHHHHHHH--HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred chHHHH---------HHHHHHhhCCCccEEEccCC-ccccccHHHH--HHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence 111000 01111235688999999988 3433211 00 01111 26789999999875332 67777
Q ss_pred CcccCCcceEEEcccc
Q 003367 787 LLLTTKMNELTMNWCS 802 (826)
Q Consensus 787 l~~l~~L~~L~l~~c~ 802 (826)
+..+++|++|++++|+
T Consensus 394 l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 394 LLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHCCCCCEEECCSSS
T ss_pred HHhCCCccEEECCCCC
Confidence 7778889999999886
No 72
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.72 E-value=3.7e-17 Score=168.26 Aligned_cols=176 Identities=22% Similarity=0.244 Sum_probs=103.4
Q ss_pred hccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhc
Q 003367 458 FDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAK 537 (826)
Q Consensus 458 ~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~ 537 (826)
+..+++|+.|+++ ++ .+..++ .+..+++|++|++++|. +..+| .+..+++|++|++++|.+.+..|..++.
T Consensus 37 ~~~l~~L~~L~l~-----~~-~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 107 (272)
T 3rfs_A 37 QNELNSIDQIIAN-----NS-DIKSVQ-GIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDK 107 (272)
T ss_dssp HHHHTTCCEEECT-----TS-CCCCCT-TGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred cccccceeeeeeC-----CC-Cccccc-ccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCccCccChhHhcC
Confidence 4456677777776 33 333333 46667777777777776 44444 4677777777777777655444445677
Q ss_pred ccCCCeeeecCcccccCCcc-CCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhc
Q 003367 538 LINLRHLINEGTPLLYLPKG-LERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKL 616 (826)
Q Consensus 538 L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l 616 (826)
+++|++|++++|.+..+|.. ++++++|++|++.++.....
T Consensus 108 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--------------------------------------- 148 (272)
T 3rfs_A 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSL--------------------------------------- 148 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC---------------------------------------
T ss_pred CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCcc---------------------------------------
Confidence 77777777777776665544 45566666655444322000
Q ss_pred cCCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC-CC
Q 003367 617 ESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP-SL 695 (826)
Q Consensus 617 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l 695 (826)
....+..+++|++|++++|.+.+.++..+..+++|++|+|++|.+.+..+ .+
T Consensus 149 ---------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 201 (272)
T 3rfs_A 149 ---------------------------PKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF 201 (272)
T ss_dssp ---------------------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred ---------------------------CHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHH
Confidence 00112344566666666666666655555666666666666666655444 35
Q ss_pred CCCCccceeeccc
Q 003367 696 GRLPSLESLVVEA 708 (826)
Q Consensus 696 ~~l~~L~~L~L~~ 708 (826)
+.+++|+.|++++
T Consensus 202 ~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 202 DRLTSLQYIWLHD 214 (272)
T ss_dssp TTCTTCCEEECCS
T ss_pred hCCcCCCEEEccC
Confidence 5566666666653
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=6.3e-17 Score=167.82 Aligned_cols=58 Identities=26% Similarity=0.230 Sum_probs=34.2
Q ss_pred CCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC-CCCCCCccceeeccc
Q 003367 651 SPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP-SLGRLPSLESLVVEA 708 (826)
Q Consensus 651 ~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~ 708 (826)
+++|++|++++|.+..++|..+..+++|++|+|++|.+.+..+ .+..+++|+.|+|++
T Consensus 99 l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 3455666666666666655566666666666666666654433 345555666665553
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=5.3e-17 Score=168.36 Aligned_cols=198 Identities=20% Similarity=0.129 Sum_probs=127.3
Q ss_pred hccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhc
Q 003367 458 FDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAK 537 (826)
Q Consensus 458 ~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~ 537 (826)
+.++++++.++++ ++ .+..+|..+. ++|++|+|++|.+.+..|..+.++++|++|++++|. +..+|.. +.
T Consensus 6 ~~~l~~l~~l~~~-----~~-~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~ 75 (290)
T 1p9a_G 6 VSKVASHLEVNCD-----KR-NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GT 75 (290)
T ss_dssp EECSTTCCEEECT-----TS-CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SC
T ss_pred ccccCCccEEECC-----CC-CCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CC
Confidence 5778889999998 55 6677887664 689999999998555556779999999999999998 4455543 78
Q ss_pred ccCCCeeeecCcccccCCccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhcc
Q 003367 538 LINLRHLINEGTPLLYLPKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLE 617 (826)
Q Consensus 538 L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~ 617 (826)
+++|++|++++|.+..+|..+..+++|++|++..+..... . ...+.
T Consensus 76 l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l--~--------------------------------~~~~~ 121 (290)
T 1p9a_G 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL--P--------------------------------LGALR 121 (290)
T ss_dssp CTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCC--C--------------------------------SSTTT
T ss_pred CCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCccc--C--------------------------------HHHHc
Confidence 8999999999999999998888899998887766544110 0 01122
Q ss_pred CCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCCCCCC
Q 003367 618 SKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLPSLGR 697 (826)
Q Consensus 618 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~ 697 (826)
.+.+|+.|+++.|.+.... ...+..+++|+.|+|++|.+..+++..+..+++|+.|+|++|.+....+.+..
T Consensus 122 ~l~~L~~L~L~~N~l~~~~--------~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~ 193 (290)
T 1p9a_G 122 GLGELQELYLKGNELKTLP--------PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193 (290)
T ss_dssp TCTTCCEEECTTSCCCCCC--------TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCCCEEECCCCCCCccC--------hhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcc
Confidence 3334444444444432211 12233445555555555555555444445555555555555555432224444
Q ss_pred CCccceeecc
Q 003367 698 LPSLESLVVE 707 (826)
Q Consensus 698 l~~L~~L~L~ 707 (826)
+++|+.|+|+
T Consensus 194 ~~~L~~l~L~ 203 (290)
T 1p9a_G 194 SHLLPFAFLH 203 (290)
T ss_dssp TCCCSEEECC
T ss_pred cccCCeEEeC
Confidence 5555555555
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.70 E-value=1.8e-16 Score=163.03 Aligned_cols=101 Identities=23% Similarity=0.242 Sum_probs=69.8
Q ss_pred CCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccc-hhhcCCCCCcEEeccCCCCCcccchhhhcccCC
Q 003367 463 CLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELP-EALCDLCNLQTLDVSNCGNLHALPQGIAKLINL 541 (826)
Q Consensus 463 ~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L 541 (826)
..+.++++ ++ .+..+|..+. .+|++|+|++|. +..+| ..|.++++|++|++++|.+....+..+..+++|
T Consensus 17 ~~~~l~~~-----~~-~l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L 87 (270)
T 2o6q_A 17 NKNSVDCS-----SK-KLTAIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL 87 (270)
T ss_dssp TTTEEECT-----TS-CCSSCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTC
T ss_pred CCCEEEcc-----CC-CCCccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCC
Confidence 46677777 44 5566676554 578888888887 45554 467888888888888887443333345778888
Q ss_pred CeeeecCcccccCCcc-CCCCCCCCcCCceee
Q 003367 542 RHLINEGTPLLYLPKG-LERLTCLRTLSEFTV 572 (826)
Q Consensus 542 ~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~ 572 (826)
++|++++|.+..+|.. +.++++|++|++.++
T Consensus 88 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 119 (270)
T 2o6q_A 88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCSSCCEEECCSS
T ss_pred CEEECCCCcCCcCCHhHcccccCCCEEECCCC
Confidence 8888888888777654 567777777766554
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=9.5e-17 Score=165.78 Aligned_cols=91 Identities=25% Similarity=0.353 Sum_probs=58.6
Q ss_pred ccccccccccCCCCccEEEccCCCCccccc-hhhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCcccccCC-c
Q 003367 479 SIARLPRNIKKLKHLRYLNLSNNDAIYELP-EALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPLLYLP-K 556 (826)
Q Consensus 479 ~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp-~ 556 (826)
.+..+|..+. ++|++|++++|. +..+| ..+.++++|++|++++|.+....+..+.++++|++|++++|.+..++ .
T Consensus 18 ~l~~ip~~l~--~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (276)
T 2z62_A 18 NFYKIPDNLP--FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94 (276)
T ss_dssp CCSSCCSSSC--TTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CccccCCCCC--CCccEEECCCCc-ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh
Confidence 3445565543 467777777777 44444 36777777777777777754444456777777777777777776555 3
Q ss_pred cCCCCCCCCcCCceee
Q 003367 557 GLERLTCLRTLSEFTV 572 (826)
Q Consensus 557 ~i~~L~~L~~L~~~~~ 572 (826)
.+.++++|++|++..+
T Consensus 95 ~~~~l~~L~~L~l~~n 110 (276)
T 2z62_A 95 AFSGLSSLQKLVAVET 110 (276)
T ss_dssp TTTTCTTCCEEECTTS
T ss_pred hhcCCccccEEECCCC
Confidence 4666666666655443
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=5.3e-17 Score=167.70 Aligned_cols=201 Identities=20% Similarity=0.158 Sum_probs=129.6
Q ss_pred CCCcEEeccccccccccccccccc-cccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccC
Q 003367 462 TCLRTLCLRCHERHFCLSIARLPR-NIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLIN 540 (826)
Q Consensus 462 ~~Lr~L~L~~~~~~~~~~~~~lp~-~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~ 540 (826)
++|++|+++ ++ .+..++. .+..+++|++|+|++|.+....|..+.++++|++|++++|.+.+..|..+.++++
T Consensus 28 ~~l~~L~ls-----~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (276)
T 2z62_A 28 FSTKNLDLS-----FN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (276)
T ss_dssp TTCCEEECT-----TC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred CCccEEECC-----CC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCcc
Confidence 579999999 55 4555544 7899999999999999844444457999999999999999976666688999999
Q ss_pred CCeeeecCcccccCCc-cCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCC
Q 003367 541 LRHLINEGTPLLYLPK-GLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESK 619 (826)
Q Consensus 541 L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~ 619 (826)
|++|++++|.+..++. .++++++|++|++.++..... . ....+..+
T Consensus 102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~-------------------------------l~~~~~~l 148 (276)
T 2z62_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF--K-------------------------------LPEYFSNL 148 (276)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC--C-------------------------------CCGGGGGC
T ss_pred ccEEECCCCCccccCchhcccCCCCCEEECcCCcccee--c-------------------------------CchhhccC
Confidence 9999999999998766 588889999988766543110 0 00122334
Q ss_pred CcCCceeeEeecCCCcccccchHHHhhcCCCCCCcC-eEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC-CCCC
Q 003367 620 KHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLE-KLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP-SLGR 697 (826)
Q Consensus 620 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~-~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~ 697 (826)
++|+.|+++.|.+.... ...+..+..++.|. +|++++|.+..+++ ......+|++|+|++|.+.+..+ .+..
T Consensus 149 ~~L~~L~Ls~N~l~~~~-----~~~~~~l~~L~~l~l~L~ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 222 (276)
T 2z62_A 149 TNLEHLDLSSNKIQSIY-----CTDLRVLHQMPLLNLSLDLSLNPMNFIQP-GAFKEIRLKELALDTNQLKSVPDGIFDR 222 (276)
T ss_dssp TTCCEEECCSSCCCEEC-----GGGGHHHHTCTTCCEEEECCSSCCCEECT-TSSCSCCEEEEECCSSCCSCCCTTTTTT
T ss_pred CCCCEEECCCCCCCcCC-----HHHhhhhhhccccceeeecCCCcccccCc-cccCCCcccEEECCCCceeecCHhHhcc
Confidence 45555555555433221 01111222222333 56666666665533 23333356666666666554433 3455
Q ss_pred CCccceeecc
Q 003367 698 LPSLESLVVE 707 (826)
Q Consensus 698 l~~L~~L~L~ 707 (826)
+++|+.|+++
T Consensus 223 l~~L~~L~l~ 232 (276)
T 2z62_A 223 LTSLQKIWLH 232 (276)
T ss_dssp CCSCCEEECC
T ss_pred cccccEEEcc
Confidence 6666666665
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=2.8e-16 Score=158.34 Aligned_cols=88 Identities=25% Similarity=0.385 Sum_probs=53.0
Q ss_pred cccccccccCCCCccEEEccCCCCccccch-hhcCCCCCcEEeccCCCCCcccc-hhhhcccCCCeeeecC-cccccCCc
Q 003367 480 IARLPRNIKKLKHLRYLNLSNNDAIYELPE-ALCDLCNLQTLDVSNCGNLHALP-QGIAKLINLRHLINEG-TPLLYLPK 556 (826)
Q Consensus 480 ~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~-~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~-~~l~~lp~ 556 (826)
+..+|. +. .+|++|++++|. +..+|. .|.++++|++|++++|..++.+| ..|.++++|++|++++ |.+..+|.
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred ccccCC-CC--CcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 555665 33 367777777777 444443 57777777777777775333333 4667777777777775 66665553
Q ss_pred -cCCCCCCCCcCCcee
Q 003367 557 -GLERLTCLRTLSEFT 571 (826)
Q Consensus 557 -~i~~L~~L~~L~~~~ 571 (826)
.+.++++|++|++.+
T Consensus 99 ~~f~~l~~L~~L~l~~ 114 (239)
T 2xwt_C 99 DALKELPLLKFLGIFN 114 (239)
T ss_dssp TSEECCTTCCEEEEEE
T ss_pred HHhCCCCCCCEEeCCC
Confidence 244444444444443
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=2.5e-16 Score=161.84 Aligned_cols=79 Identities=20% Similarity=0.260 Sum_probs=66.0
Q ss_pred CccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCcccccCCcc-CCCCCCCCcCCce
Q 003367 492 HLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPLLYLPKG-LERLTCLRTLSEF 570 (826)
Q Consensus 492 ~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~ 570 (826)
.+++++++++. ++.+|..+. .+|+.|++++|.+....+..|.++++|++|++++|.+..+|.. +.++++|++|++.
T Consensus 17 ~~~~l~~~~~~-l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKK-LTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSC-CSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCC-CCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 57899999998 778997664 6899999999996555556899999999999999999988876 4788888888776
Q ss_pred eeC
Q 003367 571 TVS 573 (826)
Q Consensus 571 ~~~ 573 (826)
.+.
T Consensus 94 ~n~ 96 (270)
T 2o6q_A 94 DNK 96 (270)
T ss_dssp SSC
T ss_pred CCc
Confidence 554
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=1.3e-16 Score=167.17 Aligned_cols=192 Identities=21% Similarity=0.202 Sum_probs=140.5
Q ss_pred hccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhc
Q 003367 458 FDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAK 537 (826)
Q Consensus 458 ~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~ 537 (826)
+..+++|+.|+++ ++ .+..+| .+..+++|++|+|++|. +..+|. +..+++|++|++++|. +..+| .+..
T Consensus 37 ~~~l~~L~~L~l~-----~~-~i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~ 105 (308)
T 1h6u_A 37 QADLDGITTLSAF-----GT-GVTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNP-LKNVS-AIAG 105 (308)
T ss_dssp HHHHHTCCEEECT-----TS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTT
T ss_pred HHHcCCcCEEEee-----CC-CccCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCc-CCCch-hhcC
Confidence 4567889999998 55 566666 68889999999999998 777777 9999999999999998 45555 6889
Q ss_pred ccCCCeeeecCcccccCCccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhcc
Q 003367 538 LINLRHLINEGTPLLYLPKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLE 617 (826)
Q Consensus 538 L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~ 617 (826)
+++|++|++++|.+..+|. +..+++|++|++..+..... . .+.
T Consensus 106 l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~----~--------------------------------~l~ 148 (308)
T 1h6u_A 106 LQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNI----S--------------------------------PLA 148 (308)
T ss_dssp CTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCC----G--------------------------------GGG
T ss_pred CCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcC----c--------------------------------ccc
Confidence 9999999999999988875 88889999888766543110 0 023
Q ss_pred CCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCCCCCC
Q 003367 618 SKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLPSLGR 697 (826)
Q Consensus 618 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~ 697 (826)
.+++|+.|+++.|.+.... .+..+++|++|++++|.+..+ +. +..+++|++|+|++|.+.+.. .+..
T Consensus 149 ~l~~L~~L~l~~n~l~~~~----------~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~N~l~~~~-~l~~ 215 (308)
T 1h6u_A 149 GLTNLQYLSIGNAQVSDLT----------PLANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLKNNQISDVS-PLAN 215 (308)
T ss_dssp GCTTCCEEECCSSCCCCCG----------GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECTTSCCCBCG-GGTT
T ss_pred CCCCccEEEccCCcCCCCh----------hhcCCCCCCEEECCCCccCcC-hh-hcCCCCCCEEEccCCccCccc-cccC
Confidence 4455666666666543211 155667788888888877776 32 677778888888887775433 4677
Q ss_pred CCccceeeccccc
Q 003367 698 LPSLESLVVEALS 710 (826)
Q Consensus 698 l~~L~~L~L~~~~ 710 (826)
+++|+.|+++++.
T Consensus 216 l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 216 TSNLFIVTLTNQT 228 (308)
T ss_dssp CTTCCEEEEEEEE
T ss_pred CCCCCEEEccCCe
Confidence 7777777777554
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=9e-17 Score=165.35 Aligned_cols=211 Identities=17% Similarity=0.134 Sum_probs=164.6
Q ss_pred cccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCcccccCCcc-CCCCCCC
Q 003367 486 NIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPLLYLPKG-LERLTCL 564 (826)
Q Consensus 486 ~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L 564 (826)
.+..+.+|+.|++++|. +..++. +..+++|++|++++|.+. .+ ..+..+++|++|++++|.+..+|.. ++++++|
T Consensus 36 ~~~~l~~L~~L~l~~~~-i~~~~~-l~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSD-IKSVQG-IQYLPNVRYLALGGNKLH-DI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp CHHHHTTCCEEECTTSC-CCCCTT-GGGCTTCCEEECTTSCCC-CC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred ccccccceeeeeeCCCC-cccccc-cccCCCCcEEECCCCCCC-Cc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence 35678899999999998 777764 889999999999999854 44 4789999999999999999988765 6888888
Q ss_pred CcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCCcCCceeeEeecCCCcccccchHHH
Q 003367 565 RTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNEV 644 (826)
Q Consensus 565 ~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 644 (826)
++|++..+..... .
T Consensus 112 ~~L~L~~n~l~~~------------------------------------------------------------------~ 125 (272)
T 3rfs_A 112 KELVLVENQLQSL------------------------------------------------------------------P 125 (272)
T ss_dssp CEEECTTSCCCCC------------------------------------------------------------------C
T ss_pred CEEECCCCcCCcc------------------------------------------------------------------C
Confidence 8887765533100 0
Q ss_pred hhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC-CCCCCCccceeeccccccceEeCcccccCC
Q 003367 645 LEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP-SLGRLPSLESLVVEALSSVRRVGNEFLGIE 723 (826)
Q Consensus 645 ~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 723 (826)
...+..+++|++|++++|.+.+.+|.++..+++|+.|+|++|.+.+..+ .++.+++|+.|+++++. +.+..
T Consensus 126 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~--------l~~~~ 197 (272)
T 3rfs_A 126 DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ--------LKSVP 197 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--------CSCCC
T ss_pred HHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc--------CCccC
Confidence 1124456899999999999999877788999999999999999886665 57899999999999654 22221
Q ss_pred CCccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCCCCCCCCCCCCcccCCc
Q 003367 724 SDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKLKALPDHLLLTTKM 793 (826)
Q Consensus 724 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L 793 (826)
+ .....+++|++|++++|+. .+.+++|+.|+++.|.....+|..+..+...
T Consensus 198 ~------~~~~~l~~L~~L~l~~N~~-------------~~~~~~l~~l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 198 D------GVFDRLTSLQYIWLHDNPW-------------DCTCPGIRYLSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp T------TTTTTCTTCCEEECCSSCB-------------CCCTTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred H------HHHhCCcCCCEEEccCCCc-------------cccCcHHHHHHHHHHhCCCcccCcccccCCC
Confidence 1 1134689999999999841 1257899999999988777899877765543
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.67 E-value=3.3e-16 Score=157.90 Aligned_cols=94 Identities=18% Similarity=0.249 Sum_probs=75.1
Q ss_pred CCCcEEeccccccccccccccccc-cccCCCCccEEEccCCCCccccc-hhhcCCCCCcEEeccC-CCCCcccchhhhcc
Q 003367 462 TCLRTLCLRCHERHFCLSIARLPR-NIKKLKHLRYLNLSNNDAIYELP-EALCDLCNLQTLDVSN-CGNLHALPQGIAKL 538 (826)
Q Consensus 462 ~~Lr~L~L~~~~~~~~~~~~~lp~-~i~~l~~L~~L~Ls~~~~~~~lp-~~i~~L~~L~~L~L~~-~~~~~~lp~~i~~L 538 (826)
.+|++|+++ ++ .+..+|. .|..+++|++|++++|..++.+| ..|.++++|++|++++ |.+....+..|..+
T Consensus 31 ~~l~~L~l~-----~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l 104 (239)
T 2xwt_C 31 PSTQTLKLI-----ET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL 104 (239)
T ss_dssp TTCCEEEEE-----SC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECC
T ss_pred CcccEEEEe-----CC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCC
Confidence 389999999 55 5666655 78899999999999996466666 4799999999999998 77544444678999
Q ss_pred cCCCeeeecCcccccCCccCCCCC
Q 003367 539 INLRHLINEGTPLLYLPKGLERLT 562 (826)
Q Consensus 539 ~~L~~L~l~~~~l~~lp~~i~~L~ 562 (826)
++|++|++++|.+..+|. +..++
T Consensus 105 ~~L~~L~l~~n~l~~lp~-~~~l~ 127 (239)
T 2xwt_C 105 PLLKFLGIFNTGLKMFPD-LTKVY 127 (239)
T ss_dssp TTCCEEEEEEECCCSCCC-CTTCC
T ss_pred CCCCEEeCCCCCCccccc-ccccc
Confidence 999999999998887764 44433
No 83
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.67 E-value=1.2e-18 Score=194.80 Aligned_cols=340 Identities=18% Similarity=0.122 Sum_probs=209.6
Q ss_pred CcceEEEEEecCCCCccccCCcccchhhhchhhhccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCc
Q 003367 425 TKLRSLSIVHKSNSSTIFPGIRDSVADIALPSLFDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAI 504 (826)
Q Consensus 425 ~~lr~l~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~ 504 (826)
..++.|+++.+.... ......+..+++|++|+|++|.+... ....+|..+..+++|++|+|++|.+.
T Consensus 3 ~~l~~L~Ls~~~l~~------------~~~~~~~~~~~~L~~L~L~~~~l~~~-~~~~l~~~l~~~~~L~~L~Ls~n~l~ 69 (461)
T 1z7x_W 3 LDIQSLDIQCEELSD------------ARWAELLPLLQQCQVVRLDDCGLTEA-RCKDISSALRVNPALAELNLRSNELG 69 (461)
T ss_dssp EEEEEEEEESCCCCH------------HHHHHHHHHHTTCSEEEEESSCCCHH-HHHHHHHHHHTCTTCCEEECTTCCCH
T ss_pred ccceehhhhhcccCc------------hhHHHHHhhcCCccEEEccCCCCCHH-HHHHHHHHHHhCCCcCEEeCCCCcCC
Confidence 467888887763221 11234578899999999995554322 23356788899999999999999844
Q ss_pred cccchhh-cCCC----CCcEEeccCCCCCc----ccchhhhcccCCCeeeecCcccccC-----Ccc-CCCCCCCCcCCc
Q 003367 505 YELPEAL-CDLC----NLQTLDVSNCGNLH----ALPQGIAKLINLRHLINEGTPLLYL-----PKG-LERLTCLRTLSE 569 (826)
Q Consensus 505 ~~lp~~i-~~L~----~L~~L~L~~~~~~~----~lp~~i~~L~~L~~L~l~~~~l~~l-----p~~-i~~L~~L~~L~~ 569 (826)
...+..+ ..+. +|++|++++|.+.. .+|..+..+++|++|++++|.+... ... ....++|++|++
T Consensus 70 ~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 149 (461)
T 1z7x_W 70 DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQL 149 (461)
T ss_dssp HHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEEC
Confidence 3333333 3455 79999999998653 5688999999999999999988632 122 234668999998
Q ss_pred eeeCcccCcC--cccCcccccccccCCCceEEcccCCCCChhhhhhhh----cc-CCCcCCceeeEeecCCCcccccchH
Q 003367 570 FTVSDIENVS--KAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAK----LE-SKKHLVCLRLEFIKLGRVELVDKDN 642 (826)
Q Consensus 570 ~~~~~~~~~~--~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~----l~-~~~~L~~L~l~~~~l~~~~~~~~~~ 642 (826)
..+....... -...+..+++|..| .+..- . +....... +. ..++|+.|+++.+.++... ..
T Consensus 150 ~~n~l~~~~~~~l~~~l~~~~~L~~L----~L~~n---~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~----~~ 217 (461)
T 1z7x_W 150 EYCSLSAASCEPLASVLRAKPDFKEL----TVSNN---D-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN----CR 217 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCTTCCEE----ECCSS---B-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH----HH
T ss_pred CCCCCCHHHHHHHHHHHhhCCCCCEE----ECcCC---C-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH----HH
Confidence 8775522100 01112222333322 11111 1 11111111 11 3568888888888765432 12
Q ss_pred HHhhcCCCCCCcCeEEEeccCCCCCC-----CCcccCccCCcEEEEecCCCCCC----CC-CCCCCCccceeeccccccc
Q 003367 643 EVLEALQPSPDLEKLTICDYKSKIIS-----PSWLMSLTELRMLNLQRCGKCEQ----LP-SLGRLPSLESLVVEALSSV 712 (826)
Q Consensus 643 ~~~~~l~~~~~L~~L~L~~~~~~~~~-----p~~l~~l~~L~~L~L~~~~~~~~----l~-~l~~l~~L~~L~L~~~~~l 712 (826)
.++..+..+++|++|++++|.+.... +..+..+++|++|+|++|.+... ++ .+..+++|++|+++++. +
T Consensus 218 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i 296 (461)
T 1z7x_W 218 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-L 296 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-C
T ss_pred HHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-C
Confidence 34455667789999999998765431 22233578999999999987653 34 56668899999998654 2
Q ss_pred eEeCc-ccccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCCCCCCCC-CC----C
Q 003367 713 RRVGN-EFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKLKAL-PD----H 786 (826)
Q Consensus 713 ~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-p~----~ 786 (826)
...+. .+... .....++|++|++++|. +..... ...+..+..+++|+.|++++|. +... +. .
T Consensus 297 ~~~~~~~l~~~---------l~~~~~~L~~L~L~~n~-l~~~~~-~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~ 364 (461)
T 1z7x_W 297 GDEGARLLCET---------LLEPGCQLESLWVKSCS-FTAACC-SHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQG 364 (461)
T ss_dssp HHHHHHHHHHH---------HTSTTCCCCEEECTTSC-CBGGGH-HHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHH
T ss_pred chHHHHHHHHH---------hccCCccceeeEcCCCC-CchHHH-HHHHHHHhhCCCccEEEccCCc-cccccHHHHHHH
Confidence 11111 01100 01134789999999984 332210 0002234467999999999975 4422 11 1
Q ss_pred Cc-ccCCcceEEEcccc
Q 003367 787 LL-LTTKMNELTMNWCS 802 (826)
Q Consensus 787 l~-~l~~L~~L~l~~c~ 802 (826)
+. ..++|++|++++|.
T Consensus 365 l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 365 LGQPGSVLRVLWLADCD 381 (461)
T ss_dssp HTSTTCCCCEEECTTSC
T ss_pred HcCCCCceEEEECCCCC
Confidence 11 25689999999995
No 84
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.67 E-value=3.1e-18 Score=197.90 Aligned_cols=332 Identities=14% Similarity=0.055 Sum_probs=156.4
Q ss_pred cceEEEEEecCCCCccccCCcccchhhhchhhhccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCc-
Q 003367 426 KLRSLSIVHKSNSSTIFPGIRDSVADIALPSLFDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAI- 504 (826)
Q Consensus 426 ~lr~l~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~- 504 (826)
.++.|++..+.... ...++....++++|++|+|++|.+.+. ....++..+..+++|++|++++|.+.
T Consensus 139 ~L~~L~L~~~~~~~-----------~~~l~~~~~~~~~L~~L~L~~~~~~~~-~~~~l~~~~~~~~~L~~L~L~~n~~~~ 206 (592)
T 3ogk_B 139 DLETLKLDKCSGFT-----------TDGLLSIVTHCRKIKTLLMEESSFSEK-DGKWLHELAQHNTSLEVLNFYMTEFAK 206 (592)
T ss_dssp GCCEEEEESCEEEE-----------HHHHHHHHHHCTTCSEEECTTCEEECC-CSHHHHHHHHHCCCCCEEECTTCCCSS
T ss_pred cCcEEECcCCCCcC-----------HHHHHHHHhhCCCCCEEECccccccCc-chhHHHHHHhcCCCccEEEeeccCCCc
Confidence 47788777652110 011233445677777777774432211 11113333456677777777777632
Q ss_pred ---cccchhhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCcccc----cCCccCCCCCCCCcCCceeeCcccC
Q 003367 505 ---YELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPLL----YLPKGLERLTCLRTLSEFTVSDIEN 577 (826)
Q Consensus 505 ---~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~----~lp~~i~~L~~L~~L~~~~~~~~~~ 577 (826)
..++..+.++++|++|++++|. ...+|..+..+++|++|+++.+... ..+..+..+++|+.|.+..+... .
T Consensus 207 ~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~ 284 (592)
T 3ogk_B 207 ISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-E 284 (592)
T ss_dssp CCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-T
T ss_pred cCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-H
Confidence 2445556667777777777776 4446667777777777777632111 22233444445554433322110 0
Q ss_pred cCcccCcccccccccCCCceEEcccC--------------CCC------Ch-hhhhhhhccCCCcCCceeeEe-------
Q 003367 578 VSKAGSLQCLQNLNHLQGSLVLTALG--------------NVT------DV-GEAKSAKLESKKHLVCLRLEF------- 629 (826)
Q Consensus 578 ~~~~~~l~~L~~L~~L~~~l~~~~l~--------------~~~------~~-~~~~~~~l~~~~~L~~L~l~~------- 629 (826)
....+..+.+|..| .+.... ++. .. ..........+++|+.|+++.
T Consensus 285 --l~~~~~~~~~L~~L----~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~ 358 (592)
T 3ogk_B 285 --MPILFPFAAQIRKL----DLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGM 358 (592)
T ss_dssp --GGGGGGGGGGCCEE----EETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTT
T ss_pred --HHHHHhhcCCCcEE----ecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCcccccc
Confidence 00111111111111 111100 000 00 011111123345555555552
Q ss_pred ----ecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccC-ccCCcEEEEecCC---CCCCCC-------C
Q 003367 630 ----IKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMS-LTELRMLNLQRCG---KCEQLP-------S 694 (826)
Q Consensus 630 ----~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~-l~~L~~L~L~~~~---~~~~l~-------~ 694 (826)
+.++ ..........+++|++|+++.+.+++..+..+.. +++|+.|+|++|. ..+..| .
T Consensus 359 ~~~~~~~~-------~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~ 431 (592)
T 3ogk_B 359 EDEEGLVS-------QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL 431 (592)
T ss_dssp SSTTCCCC-------HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHH
T ss_pred ccccCccC-------HHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHH
Confidence 1111 1111111223556666666555554433333433 6666666665321 111111 1
Q ss_pred CCCCCccceeecccccc-ceEeCcccccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceee
Q 003367 695 LGRLPSLESLVVEALSS-VRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLK 773 (826)
Q Consensus 695 l~~l~~L~~L~L~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~ 773 (826)
+..+++|+.|+++.|.+ +. +..+.. ....+++|++|++++|. +..... +..+..+++|+.|+
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~--~~~~~~----------~~~~~~~L~~L~L~~n~-l~~~~~----~~~~~~~~~L~~L~ 494 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLT--DLGLSY----------IGQYSPNVRWMLLGYVG-ESDEGL----MEFSRGCPNLQKLE 494 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCC--HHHHHH----------HHHSCTTCCEEEECSCC-SSHHHH----HHHHTCCTTCCEEE
T ss_pred HHhCCCCCEEEEecCCCCcc--HHHHHH----------HHHhCccceEeeccCCC-CCHHHH----HHHHhcCcccCeee
Confidence 33466667776654432 10 000100 01246778888887773 332111 11234678888888
Q ss_pred ecCCCCCC--CCCCCCcccCCcceEEEcccc
Q 003367 774 LDGCHKLK--ALPDHLLLTTKMNELTMNWCS 802 (826)
Q Consensus 774 l~~c~~l~--~lp~~l~~l~~L~~L~l~~c~ 802 (826)
|++|+ ++ .++..+..+++|++|++++|+
T Consensus 495 l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 495 MRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp EESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred ccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 88887 43 134334457788888888887
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.67 E-value=7.4e-18 Score=179.77 Aligned_cols=240 Identities=17% Similarity=0.144 Sum_probs=148.1
Q ss_pred hhhhccC--CCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccc-cchhhcCCCCCcEEeccCCCCCccc
Q 003367 455 PSLFDRL--TCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYE-LPEALCDLCNLQTLDVSNCGNLHAL 531 (826)
Q Consensus 455 ~~~~~~l--~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~-lp~~i~~L~~L~~L~L~~~~~~~~l 531 (826)
+..+..+ +++++|+++ ++ .+...+..+..+++|++|+|++|.+... +|..+..+++|++|++++|.+....
T Consensus 61 ~~~~~~~~~~~l~~L~l~-----~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~ 134 (336)
T 2ast_B 61 PDVTGRLLSQGVIAFRCP-----RS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPI 134 (336)
T ss_dssp HHHHHHHHHTTCSEEECT-----TC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHH
T ss_pred HHHHHhhhhccceEEEcC-----Cc-cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHH
Confidence 4455666 889999998 44 4444555577899999999999984434 8888899999999999999877778
Q ss_pred chhhhcccCCCeeeecCc-ccc--cCCccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCCh
Q 003367 532 PQGIAKLINLRHLINEGT-PLL--YLPKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDV 608 (826)
Q Consensus 532 p~~i~~L~~L~~L~l~~~-~l~--~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~ 608 (826)
|..++.+++|++|++++| .+. .+|..+.++++|++|++.++..+.
T Consensus 135 ~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~-------------------------------- 182 (336)
T 2ast_B 135 VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT-------------------------------- 182 (336)
T ss_dssp HHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC--------------------------------
T ss_pred HHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC--------------------------------
Confidence 888999999999999988 565 355556667777777665541110
Q ss_pred hhhhhhhccCCCcCCceeeEeecCCCcccccchHHHhhcCCCCC-CcCeEEEeccC--CC-CCCCCcccCccCCcEEEEe
Q 003367 609 GEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSP-DLEKLTICDYK--SK-IISPSWLMSLTELRMLNLQ 684 (826)
Q Consensus 609 ~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~-~L~~L~L~~~~--~~-~~~p~~l~~l~~L~~L~L~ 684 (826)
.......+..++ +|++|++++|. +. ...|..+..+++|++|+|+
T Consensus 183 --------------------------------~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~ 230 (336)
T 2ast_B 183 --------------------------------EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 230 (336)
T ss_dssp --------------------------------HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred --------------------------------hHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCC
Confidence 001112222344 66666666662 22 1114455566677777777
Q ss_pred cCC-CCCC-CCCCCCCCccceeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccccccccccccccccC
Q 003367 685 RCG-KCEQ-LPSLGRLPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKD 762 (826)
Q Consensus 685 ~~~-~~~~-l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 762 (826)
+|. +.+. ++.++.+++|+.|++++|..+. +..+.. ...+++|++|++++| +.. ..
T Consensus 231 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~-----------l~~~~~L~~L~l~~~--i~~--------~~ 287 (336)
T 2ast_B 231 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDII--PETLLE-----------LGEIPTLKTLQVFGI--VPD--------GT 287 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTCTTCC--GGGGGG-----------GGGCTTCCEEECTTS--SCT--------TC
T ss_pred CCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC--HHHHHH-----------HhcCCCCCEEeccCc--cCH--------HH
Confidence 776 3322 3356666777777777654221 111111 235777788877777 221 11
Q ss_pred cCCC-CccceeeecCCCCCCCCCCCC
Q 003367 763 IKIM-PRLHRLKLDGCHKLKALPDHL 787 (826)
Q Consensus 763 ~~~l-~~L~~L~l~~c~~l~~lp~~l 787 (826)
+..+ .+|+.|++++|..-...|..+
T Consensus 288 ~~~l~~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 288 LQLLKEALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp HHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred HHHHHhhCcceEEecccCccccCCcc
Confidence 2223 246666677655444555443
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.66 E-value=3.1e-16 Score=164.27 Aligned_cols=169 Identities=18% Similarity=0.278 Sum_probs=113.4
Q ss_pred ccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCcccccCCccCCCCCCCCc
Q 003367 487 IKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPLLYLPKGLERLTCLRT 566 (826)
Q Consensus 487 i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~ 566 (826)
+..+++|++|++++|. +..+| .+..+++|++|++++|. +..++. +..+++|++|++++|.+..+| .+..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~-i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCC-ccCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCE
Confidence 4568899999999998 77787 58999999999999998 555665 999999999999999998876 5888888888
Q ss_pred CCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCCcCCceeeEeecCCCcccccchHHHhh
Q 003367 567 LSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNEVLE 646 (826)
Q Consensus 567 L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 646 (826)
|++.++.... + ..+..+++|+.|+++.|.+....
T Consensus 112 L~l~~n~l~~----------~--------------------------~~l~~l~~L~~L~l~~n~l~~~~---------- 145 (308)
T 1h6u_A 112 LDLTSTQITD----------V--------------------------TPLAGLSNLQVLYLDLNQITNIS---------- 145 (308)
T ss_dssp EECTTSCCCC----------C--------------------------GGGTTCTTCCEEECCSSCCCCCG----------
T ss_pred EECCCCCCCC----------c--------------------------hhhcCCCCCCEEECCCCccCcCc----------
Confidence 8776554310 0 01233445555555555433211
Q ss_pred cCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCCCCCCCCccceeecccc
Q 003367 647 ALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLPSLGRLPSLESLVVEAL 709 (826)
Q Consensus 647 ~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~ 709 (826)
.+..+++|+.|++++|.+... +. +..+++|+.|+|++|.+.+ ++.+..+++|+.|+++++
T Consensus 146 ~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 146 PLAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISD-ISPLASLPNLIEVHLKNN 205 (308)
T ss_dssp GGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECTTS
T ss_pred cccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCc-ChhhcCCCCCCEEEccCC
Confidence 134455666666666666654 22 5566666666666665543 233555666666666543
No 87
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=5.6e-16 Score=165.75 Aligned_cols=228 Identities=16% Similarity=0.166 Sum_probs=140.3
Q ss_pred ccccccccccCCCCccEEEccCCCCccccch-hhcCCCCCcEEeccCCCCCcccch-hhhcccCCCe-eeecCcccccCC
Q 003367 479 SIARLPRNIKKLKHLRYLNLSNNDAIYELPE-ALCDLCNLQTLDVSNCGNLHALPQ-GIAKLINLRH-LINEGTPLLYLP 555 (826)
Q Consensus 479 ~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~-L~l~~~~l~~lp 555 (826)
.+..+|..+ ..++++|+|++|. ++.+|+ .|.++++|++|+|++|.+.+.+|. .|.++++|++ +.+++|++..+|
T Consensus 20 ~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~ 96 (350)
T 4ay9_X 20 KVTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN 96 (350)
T ss_dssp TCCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC
T ss_pred CCCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC
Confidence 566777766 3678888888888 677775 578888889999888887676664 4677888775 455578888775
Q ss_pred c-cCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCCcCCceeeEee-cCC
Q 003367 556 K-GLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKHLVCLRLEFI-KLG 633 (826)
Q Consensus 556 ~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~l~ 633 (826)
. .+..+++|++|++.++..... +....+. ...+..+.+..+ .+.
T Consensus 97 ~~~f~~l~~L~~L~l~~n~l~~~-~~~~~~~---------------------------------~~~l~~l~l~~~~~i~ 142 (350)
T 4ay9_X 97 PEAFQNLPNLQYLLISNTGIKHL-PDVHKIH---------------------------------SLQKVLLDIQDNINIH 142 (350)
T ss_dssp TTSBCCCTTCCEEEEEEECCSSC-CCCTTCC---------------------------------BSSCEEEEEESCTTCC
T ss_pred chhhhhccccccccccccccccC-Cchhhcc---------------------------------cchhhhhhhccccccc
Confidence 4 478888888888877654211 1110000 001111222111 100
Q ss_pred CcccccchHHHhhcCCCC-CCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC--CCCCCCccceeeccccc
Q 003367 634 RVELVDKDNEVLEALQPS-PDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP--SLGRLPSLESLVVEALS 710 (826)
Q Consensus 634 ~~~~~~~~~~~~~~l~~~-~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~ 710 (826)
... ...+... ..++.|++++|.++.+ |.......+|+.|++++|+..+.+| .+..+++|+.|+|+++.
T Consensus 143 ~l~--------~~~f~~~~~~l~~L~L~~N~i~~i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~ 213 (350)
T 4ay9_X 143 TIE--------RNSFVGLSFESVILWLNKNGIQEI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR 213 (350)
T ss_dssp EEC--------TTSSTTSBSSCEEEECCSSCCCEE-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC
T ss_pred ccc--------ccchhhcchhhhhhccccccccCC-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC
Confidence 000 0112222 3577888888888777 4444456678888887766666666 46788888888887543
Q ss_pred cceEeCcccccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecC
Q 003367 711 SVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDG 776 (826)
Q Consensus 711 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 776 (826)
++.++ ...|.+|+.|.+.++..++.++. +..+++|+.+++.+
T Consensus 214 -l~~lp----------------~~~~~~L~~L~~l~~~~l~~lP~-------l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 214 -IHSLP----------------SYGLENLKKLRARSTYNLKKLPT-------LEKLVALMEASLTY 255 (350)
T ss_dssp -CCCCC----------------SSSCTTCCEEECTTCTTCCCCCC-------TTTCCSCCEEECSC
T ss_pred -cCccC----------------hhhhccchHhhhccCCCcCcCCC-------chhCcChhhCcCCC
Confidence 22221 12466677777766666666542 45677777777764
No 88
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.65 E-value=3.1e-15 Score=160.35 Aligned_cols=293 Identities=13% Similarity=0.122 Sum_probs=176.6
Q ss_pred ccCCccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCC------C
Q 003367 75 IDVSKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPV------D 148 (826)
Q Consensus 75 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~------~ 148 (826)
..+..|+||++++++|.+++.. + +++.|+|++|+|||||++++++.. . .+|+++.... +
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~-------~-~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~ 73 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLEN-------Y-PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHIT 73 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHH-------C-SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBC
T ss_pred CChHhcCChHHHHHHHHHHHhc-------C-CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCC
Confidence 3456799999999999999853 1 589999999999999999999842 1 6777765432 5
Q ss_pred HHHHHHHHHHHhccc------------------chhhhhHHHHHHHHHHHhcC-CceeEEeccCCCCCh-------hhHH
Q 003367 149 EIRVAKAILESFRDV------------------VSAVAAFDTLLRHIEKSVKG-KKFLLVLDDVWSGNP-------TKWE 202 (826)
Q Consensus 149 ~~~~~~~i~~~l~~~------------------~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~-------~~~~ 202 (826)
...+...+.+.+... ........++.+.+.+.... ++++|||||++.-+. ..+.
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~ 153 (350)
T 2qen_A 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLA 153 (350)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHH
Confidence 566666666655320 00123455566666665542 389999999965321 2233
Q ss_pred HHHhhhcCCCCCcEEEEecccHHHHhh----------c--cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHH
Q 003367 203 ELVSTLKFGSPESRILVTTRKEDVAKM----------M--RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIG 270 (826)
Q Consensus 203 ~l~~~~~~~~~~s~iivTtR~~~v~~~----------~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~ 270 (826)
.+...... .++.++|+|++...+... + .....+.+.+|+.+|+.+++............ .+.+
T Consensus 154 ~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~----~~~~ 228 (350)
T 2qen_A 154 LFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP----ENEI 228 (350)
T ss_dssp HHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHH
T ss_pred HHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHH
Confidence 33333222 257789999887643211 1 11247899999999999999875322111111 3567
Q ss_pred HHHHHhcCCCchhHHHHhhhhcCCcCHHHHHH-hhhhhcccccccCcCcchhh-hhhccCCcHHHHHHhhhhccCCCCce
Q 003367 271 RMIADKCNGLPLAAKTSGSLLSLKTTMEQWKT-VLDSEIWKVEDVEKGLLPPL-VISYFDLPSIVRRCFSYCAIFPKGYE 348 (826)
Q Consensus 271 ~~i~~~~~glPLal~~~~~~l~~~~~~~~w~~-~~~~~~~~~~~~~~~i~~~l-~~sy~~L~~~~k~~fl~~a~fp~~~~ 348 (826)
..|++.|+|+|+++..++..+....+...+.. +.+..... +...+ .+.+ . ++..+..+..+|. + .
T Consensus 229 ~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~l~~-~-~~~~~~~l~~la~---g-~ 295 (350)
T 2qen_A 229 EEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGL-------IMGELEELRR-R-SPRYVDILRAIAL---G-Y 295 (350)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-------HHHHHHHHHH-H-CHHHHHHHHHHHT---T-C
T ss_pred HHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHH-------HHHHHHHHHh-C-ChhHHHHHHHHHh---C-C
Confidence 88999999999999998865422112222211 11110000 11111 1111 2 6788899998887 2 1
Q ss_pred eCHHHHHHHHHHcCCcccCCCchHHHHHHHHHHHHhhccCcccccCCCCCCeeeEEEE-chhHHHHH
Q 003367 349 INKDHLIKLWMAQGYLKVEGREDMELIGEECFVNLATRSFFQDFERSEYDGSIISCKM-HDIVHDFA 414 (826)
Q Consensus 349 i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~~m-hdlv~dl~ 414 (826)
.+...+.....+.. . +.+ ......+++.|.+.+++.... + .|++ |++++++.
T Consensus 296 ~~~~~l~~~~~~~~-~----~~~-~~~~~~~l~~L~~~gli~~~~-----~---~y~~~~p~~~~~~ 348 (350)
T 2qen_A 296 NRWSLIRDYLAVKG-T----KIP-EPRLYALLENLKKMNWIVEED-----N---TYKIADPVVATVL 348 (350)
T ss_dssp CSHHHHHHHHHHTT-C----CCC-HHHHHHHHHHHHHTTSEEEET-----T---EEEESSHHHHHHH
T ss_pred CCHHHHHHHHHHHh-C----CCC-HHHHHHHHHHHHhCCCEEecC-----C---EEEEecHHHHHHH
Confidence 34455554432221 0 111 234567899999999997642 1 3555 66777654
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.63 E-value=1.6e-15 Score=153.89 Aligned_cols=175 Identities=17% Similarity=0.100 Sum_probs=130.4
Q ss_pred CCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCC
Q 003367 462 TCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINL 541 (826)
Q Consensus 462 ~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L 541 (826)
...++++++ ++ .+..+|..+. .+|++|+|++|.+.+..|..+.++++|++|+|++|.+.+..|..+..+++|
T Consensus 14 ~~~~~l~~~-----~~-~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 85 (251)
T 3m19_A 14 EGKKEVDCQ-----GK-SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85 (251)
T ss_dssp GGGTEEECT-----TC-CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCCeEEecC-----CC-CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcC
Confidence 356778887 55 6677787665 689999999998555555678899999999999998776666778899999
Q ss_pred CeeeecCcccccCCcc-CCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCC
Q 003367 542 RHLINEGTPLLYLPKG-LERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKK 620 (826)
Q Consensus 542 ~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~ 620 (826)
++|++++|.+..+|.. +..+++|++|++.++.....
T Consensus 86 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------------------------------------- 122 (251)
T 3m19_A 86 GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSL------------------------------------------- 122 (251)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-------------------------------------------
T ss_pred CEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCc-------------------------------------------
Confidence 9999999998877754 67778888777655433100
Q ss_pred cCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC-CCCCCC
Q 003367 621 HLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP-SLGRLP 699 (826)
Q Consensus 621 ~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~l~ 699 (826)
....+..+++|++|+|++|.+..+++..+..+++|++|+|++|.+.+..+ .+..++
T Consensus 123 -----------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 179 (251)
T 3m19_A 123 -----------------------PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG 179 (251)
T ss_dssp -----------------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred -----------------------ChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCC
Confidence 00123446778888888888888766678888888888888888876655 677888
Q ss_pred ccceeeccccc
Q 003367 700 SLESLVVEALS 710 (826)
Q Consensus 700 ~L~~L~L~~~~ 710 (826)
+|+.|+|++++
T Consensus 180 ~L~~L~l~~N~ 190 (251)
T 3m19_A 180 KLQTITLFGNQ 190 (251)
T ss_dssp TCCEEECCSCC
T ss_pred CCCEEEeeCCc
Confidence 88888887443
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.63 E-value=1.5e-17 Score=180.96 Aligned_cols=222 Identities=19% Similarity=0.126 Sum_probs=140.9
Q ss_pred chhhhccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCC---Cccccchhh-------cCCCCCcEEecc
Q 003367 454 LPSLFDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNND---AIYELPEAL-------CDLCNLQTLDVS 523 (826)
Q Consensus 454 ~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~---~~~~lp~~i-------~~L~~L~~L~L~ 523 (826)
++..+..+++|++|+|++|.+... ....++..+..+++|++|+|++|. +.+.+|..+ ..+++|++|+|+
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~-~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTE-AARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHH-HHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHhcCCCccEEECCCCCCCHH-HHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 356788899999999996554322 233355668889999999999974 223456544 789999999999
Q ss_pred CCCCCc----ccchhhhcccCCCeeeecCccccc-----CCccCCCC---------CCCCcCCceeeCcccCcCcccCcc
Q 003367 524 NCGNLH----ALPQGIAKLINLRHLINEGTPLLY-----LPKGLERL---------TCLRTLSEFTVSDIENVSKAGSLQ 585 (826)
Q Consensus 524 ~~~~~~----~lp~~i~~L~~L~~L~l~~~~l~~-----lp~~i~~L---------~~L~~L~~~~~~~~~~~~~~~~l~ 585 (826)
+|.+.. .+|..+..+++|++|++++|.+.. ++..+..+ ++|++|++.+|..... .
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~-----~-- 175 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG-----S-- 175 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG-----G--
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH-----H--
Confidence 998665 478889999999999999998862 23333333 6777776655543100 0
Q ss_pred cccccccCCCceEEcccCCCCChhhhhhhhccCCCcCCceeeEeecCCCcccccchHHHhh-cCCCCCCcCeEEEeccCC
Q 003367 586 CLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNEVLE-ALQPSPDLEKLTICDYKS 664 (826)
Q Consensus 586 ~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~-~l~~~~~L~~L~L~~~~~ 664 (826)
.......+..+++|+.|+++.|.++... ...... .+..+++|++|+|++|.+
T Consensus 176 -----------------------~~~l~~~l~~~~~L~~L~L~~n~l~~~g----~~~l~~~~l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 176 -----------------------MKEWAKTFQSHRLLHTVKMVQNGIRPEG----IEHLLLEGLAYCQELKVLDLQDNTF 228 (386)
T ss_dssp -----------------------HHHHHHHHHHCTTCCEEECCSSCCCHHH----HHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred -----------------------HHHHHHHHHhCCCcCEEECcCCCCCHhH----HHHHHHHHhhcCCCccEEECcCCCC
Confidence 0011123444556667777666543211 011222 555667777777777776
Q ss_pred C----CCCCCcccCccCCcEEEEecCCCCCC----CC-CC--CCCCccceeeccccc
Q 003367 665 K----IISPSWLMSLTELRMLNLQRCGKCEQ----LP-SL--GRLPSLESLVVEALS 710 (826)
Q Consensus 665 ~----~~~p~~l~~l~~L~~L~L~~~~~~~~----l~-~l--~~l~~L~~L~L~~~~ 710 (826)
. ..+|.++..+++|++|+|++|.+.+. ++ .+ +.+++|+.|+|++|.
T Consensus 229 ~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 229 THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp HHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred CcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 3 22266667777777777777776543 22 33 446777777777544
No 91
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.63 E-value=1.5e-17 Score=192.09 Aligned_cols=338 Identities=15% Similarity=0.070 Sum_probs=182.6
Q ss_pred CCcceEEEEEecCCCCccccCCcccchhhhchhhhcc-CC-CCcEEeccccccccccccccccccccCCCCccEEEccCC
Q 003367 424 ETKLRSLSIVHKSNSSTIFPGIRDSVADIALPSLFDR-LT-CLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNN 501 (826)
Q Consensus 424 ~~~lr~l~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-l~-~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~ 501 (826)
...++.|++..+... ...+..+.. ++ +|++|+|+++.. . ....++..+..+++|++|+|++|
T Consensus 111 ~~~L~~L~L~~~~i~-------------~~~~~~l~~~~~~~L~~L~L~~~~~--~-~~~~l~~~~~~~~~L~~L~L~~~ 174 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVS-------------DLDLDRLAKARADDLETLKLDKCSG--F-TTDGLLSIVTHCRKIKTLLMEES 174 (592)
T ss_dssp CTTCCEEEEESCBCC-------------HHHHHHHHHHHGGGCCEEEEESCEE--E-EHHHHHHHHHHCTTCSEEECTTC
T ss_pred CCCCCeEEeeccEec-------------HHHHHHHHHhccccCcEEECcCCCC--c-CHHHHHHHHhhCCCCCEEECccc
Confidence 466888888876221 111233333 33 499999983321 0 11223344457899999999999
Q ss_pred CCccc----cchhhcCCCCCcEEeccCCCCC----cccchhhhcccCCCeeeecCcccccCCccCCCCCCCCcCCceeeC
Q 003367 502 DAIYE----LPEALCDLCNLQTLDVSNCGNL----HALPQGIAKLINLRHLINEGTPLLYLPKGLERLTCLRTLSEFTVS 573 (826)
Q Consensus 502 ~~~~~----lp~~i~~L~~L~~L~L~~~~~~----~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~ 573 (826)
.+... ++..+..+++|++|++++|... ..++..+.++++|++|++++|.+..+|..+.++++|++|.+....
T Consensus 175 ~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~ 254 (592)
T 3ogk_B 175 SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLN 254 (592)
T ss_dssp EEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCC
T ss_pred cccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccc
Confidence 84333 4555678899999999999865 356666788999999999999999898889999999999876532
Q ss_pred cccC-cCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCCcCCceeeEeecCCCcccccchHHHhhcCCCCC
Q 003367 574 DIEN-VSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSP 652 (826)
Q Consensus 574 ~~~~-~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~ 652 (826)
.... ......+..+.+|.. +.+.... .......+..+++|+.|+++++.++. ......+..++
T Consensus 255 ~~~~~~~~~~~l~~~~~L~~----L~l~~~~-----~~~l~~~~~~~~~L~~L~Ls~~~l~~-------~~~~~~~~~~~ 318 (592)
T 3ogk_B 255 EDIGMPEKYMNLVFPRKLCR----LGLSYMG-----PNEMPILFPFAAQIRKLDLLYALLET-------EDHCTLIQKCP 318 (592)
T ss_dssp CCTTCTTSSSCCCCCTTCCE----EEETTCC-----TTTGGGGGGGGGGCCEEEETTCCCCH-------HHHHHHHTTCT
T ss_pred cccchHHHHHHhhccccccc----cCccccc-----hhHHHHHHhhcCCCcEEecCCCcCCH-------HHHHHHHHhCc
Confidence 2101 111122233333322 2222110 11122234455666666666655321 11112233444
Q ss_pred CcCeEEEeccCCCCCCCCcccC------------------------------------ccCCcEEEEecCCCCCCCC-CC
Q 003367 653 DLEKLTICDYKSKIISPSWLMS------------------------------------LTELRMLNLQRCGKCEQLP-SL 695 (826)
Q Consensus 653 ~L~~L~L~~~~~~~~~p~~l~~------------------------------------l~~L~~L~L~~~~~~~~l~-~l 695 (826)
+|++|+++++.....++..... +++|++|+++.|.+.+..+ .+
T Consensus 319 ~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l 398 (592)
T 3ogk_B 319 NLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI 398 (592)
T ss_dssp TCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHH
T ss_pred CCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHH
Confidence 5555555422111111222233 4455555554444332211 22
Q ss_pred CC-CCccceeeccccccceEeCcccccCCCCccccCccCcCCCccceeecccccc-ccccccccccccCcCCCCccceee
Q 003367 696 GR-LPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDE-WEEWDYVISGQKDIKIMPRLHRLK 773 (826)
Q Consensus 696 ~~-l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~l~~L~~L~ 773 (826)
+. +++|+.|+++++.. .+.+.+.. ....+......+++|++|++++|.. +..... ......+++|+.|+
T Consensus 399 ~~~~~~L~~L~l~~~~~----~n~l~~~p-~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~----~~~~~~~~~L~~L~ 469 (592)
T 3ogk_B 399 GTYLKNLCDFRLVLLDR----EERITDLP-LDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL----SYIGQYSPNVRWML 469 (592)
T ss_dssp HHHCCSCCEEEEEECSC----CSCCSSCC-CHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH----HHHHHSCTTCCEEE
T ss_pred HhhCCCCcEEEEeecCC----CccccCch-HHHHHHHHHHhCCCCCEEEEecCCCCccHHHH----HHHHHhCccceEee
Confidence 22 44555555543220 11111100 0000111133588899999876542 221111 01112488999999
Q ss_pred ecCCCCCC-CCCCCCcccCCcceEEEcccc
Q 003367 774 LDGCHKLK-ALPDHLLLTTKMNELTMNWCS 802 (826)
Q Consensus 774 l~~c~~l~-~lp~~l~~l~~L~~L~l~~c~ 802 (826)
|++|..-. .++..+..+++|+.|+|++|+
T Consensus 470 L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 470 LGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp ECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred ccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence 99876322 344444568899999999998
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.63 E-value=1.2e-17 Score=178.04 Aligned_cols=247 Identities=17% Similarity=0.156 Sum_probs=171.7
Q ss_pred CCcEEeccccccccccccccccccccCC--CCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcc-cchhhhccc
Q 003367 463 CLRTLCLRCHERHFCLSIARLPRNIKKL--KHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHA-LPQGIAKLI 539 (826)
Q Consensus 463 ~Lr~L~L~~~~~~~~~~~~~lp~~i~~l--~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~-lp~~i~~L~ 539 (826)
.++.++++++. +. |..+..+ .++++|++++|. +...+..+..+++|++|++++|.+... +|..+..++
T Consensus 48 ~~~~l~l~~~~------~~--~~~~~~~~~~~l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~ 118 (336)
T 2ast_B 48 LWQTLDLTGKN------LH--PDVTGRLLSQGVIAFRCPRSF-MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCS 118 (336)
T ss_dssp TSSEEECTTCB------CC--HHHHHHHHHTTCSEEECTTCE-ECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBC
T ss_pred hheeecccccc------CC--HHHHHhhhhccceEEEcCCcc-ccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCC
Confidence 47788888432 22 3456666 889999999998 444444577899999999999986544 888889999
Q ss_pred CCCeeeecCcccc-cCCccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccC
Q 003367 540 NLRHLINEGTPLL-YLPKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLES 618 (826)
Q Consensus 540 ~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~ 618 (826)
+|++|++++|.+. ..|..++++++|++|++.++..+.
T Consensus 119 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~------------------------------------------ 156 (336)
T 2ast_B 119 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS------------------------------------------ 156 (336)
T ss_dssp CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCC------------------------------------------
T ss_pred CCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCC------------------------------------------
Confidence 9999999998877 556667777888877665542110
Q ss_pred CCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEecc-CCCCC-CCCcccCcc-CCcEEEEecCC--CC-CCC
Q 003367 619 KKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDY-KSKII-SPSWLMSLT-ELRMLNLQRCG--KC-EQL 692 (826)
Q Consensus 619 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~-~~~~~-~p~~l~~l~-~L~~L~L~~~~--~~-~~l 692 (826)
.......+..+++|++|++++| .+... .+..+..++ +|++|+|++|. +. +.+
T Consensus 157 ----------------------~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l 214 (336)
T 2ast_B 157 ----------------------EFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL 214 (336)
T ss_dssp ----------------------HHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHH
T ss_pred ----------------------HHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHH
Confidence 0112223345689999999999 77652 267788899 99999999994 44 334
Q ss_pred C-CCCCCCccceeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCCCccce
Q 003367 693 P-SLGRLPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHR 771 (826)
Q Consensus 693 ~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~ 771 (826)
+ .+..+++|+.|++++|..+.... +. .+..+++|++|++++|..+.... ...+..+++|+.
T Consensus 215 ~~~~~~~~~L~~L~l~~~~~l~~~~--~~-----------~l~~l~~L~~L~l~~~~~~~~~~-----~~~l~~~~~L~~ 276 (336)
T 2ast_B 215 STLVRRCPNLVHLDLSDSVMLKNDC--FQ-----------EFFQLNYLQHLSLSRCYDIIPET-----LLELGEIPTLKT 276 (336)
T ss_dssp HHHHHHCTTCSEEECTTCTTCCGGG--GG-----------GGGGCTTCCEEECTTCTTCCGGG-----GGGGGGCTTCCE
T ss_pred HHHHhhCCCCCEEeCCCCCcCCHHH--HH-----------HHhCCCCCCEeeCCCCCCCCHHH-----HHHHhcCCCCCE
Confidence 4 56678999999999876432111 11 13367999999999996333221 124567999999
Q ss_pred eeecCCCCCCCCCC-CCccc-CCcceEEEccccchHH
Q 003367 772 LKLDGCHKLKALPD-HLLLT-TKMNELTMNWCSVLKE 806 (826)
Q Consensus 772 L~l~~c~~l~~lp~-~l~~l-~~L~~L~l~~c~~l~~ 806 (826)
|++++| ++. ++..+ .+|+.|++++| .++.
T Consensus 277 L~l~~~-----i~~~~~~~l~~~l~~L~l~~n-~l~~ 307 (336)
T 2ast_B 277 LQVFGI-----VPDGTLQLLKEALPHLQINCS-HFTT 307 (336)
T ss_dssp EECTTS-----SCTTCHHHHHHHSTTSEESCC-CSCC
T ss_pred EeccCc-----cCHHHHHHHHhhCcceEEecc-cCcc
Confidence 999998 444 23333 34777788655 4443
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.63 E-value=6.1e-16 Score=162.53 Aligned_cols=80 Identities=16% Similarity=0.141 Sum_probs=47.4
Q ss_pred CCCCcCeEEEeccCCCCCCCCcccCc---cCCcEEEEecCCCCCCCC-CCCCCCccceeeccccccceEeCcccccCCCC
Q 003367 650 PSPDLEKLTICDYKSKIISPSWLMSL---TELRMLNLQRCGKCEQLP-SLGRLPSLESLVVEALSSVRRVGNEFLGIESD 725 (826)
Q Consensus 650 ~~~~L~~L~L~~~~~~~~~p~~l~~l---~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 725 (826)
.+++|++|+|++|.+.+..|..+..+ ++|++|+|++|.+. .+| .+. ++|+.|+|+++. +.+...
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~--------l~~~~~- 289 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNR--------LNRAPQ- 289 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCC--------CCSCCC-
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCc--------CCCCch-
Confidence 34667777777777766655555554 57777777777766 344 332 677777776443 222110
Q ss_pred ccccCccCcCCCccceeeccccc
Q 003367 726 DISLSSSSVVFPKLKFLEFRDMD 748 (826)
Q Consensus 726 ~~~~~~~~~~~~~L~~L~l~~~~ 748 (826)
...+++|+.|++++|+
T Consensus 290 -------~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 290 -------PDELPEVDNLTLDGNP 305 (310)
T ss_dssp -------TTSCCCCSCEECSSTT
T ss_pred -------hhhCCCccEEECcCCC
Confidence 2356777777777764
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.62 E-value=7.3e-16 Score=161.93 Aligned_cols=199 Identities=14% Similarity=0.106 Sum_probs=122.8
Q ss_pred CCCccEEEccCCCCccccchhh--cCCCCCcEEeccCCCCCcccc----hhhhcccCCCeeeecCcccccCC-ccCCCCC
Q 003367 490 LKHLRYLNLSNNDAIYELPEAL--CDLCNLQTLDVSNCGNLHALP----QGIAKLINLRHLINEGTPLLYLP-KGLERLT 562 (826)
Q Consensus 490 l~~L~~L~Ls~~~~~~~lp~~i--~~L~~L~~L~L~~~~~~~~lp----~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~ 562 (826)
+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..| ..+..+++|++|++++|.+..+| ..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4557777777777556666666 777777777777777555433 33456777777777777776554 3466677
Q ss_pred CCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCCcCCceeeEeecCCCcccccchH
Q 003367 563 CLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDN 642 (826)
Q Consensus 563 ~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~ 642 (826)
+|++|++.+|..... .
T Consensus 170 ~L~~L~Ls~N~l~~~----------------------------------------------------------------~ 185 (310)
T 4glp_A 170 ALTSLDLSDNPGLGE----------------------------------------------------------------R 185 (310)
T ss_dssp TCCEEECCSCTTCHH----------------------------------------------------------------H
T ss_pred CCCEEECCCCCCccc----------------------------------------------------------------h
Confidence 777766655432100 0
Q ss_pred HH--hhcCCCCCCcCeEEEeccCCCCCCCC----cccCccCCcEEEEecCCCCCCCC-CCCCC---Cccceeeccccccc
Q 003367 643 EV--LEALQPSPDLEKLTICDYKSKIISPS----WLMSLTELRMLNLQRCGKCEQLP-SLGRL---PSLESLVVEALSSV 712 (826)
Q Consensus 643 ~~--~~~l~~~~~L~~L~L~~~~~~~~~p~----~l~~l~~L~~L~L~~~~~~~~l~-~l~~l---~~L~~L~L~~~~~l 712 (826)
.. ...+..+++|++|+|++|.++.+ |. .+..+++|++|+|++|.+.+..| .++.+ ++|++|+|+++.
T Consensus 186 ~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-- 262 (310)
T 4glp_A 186 GLMAALCPHKFPAIQNLALRNTGMETP-TGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-- 262 (310)
T ss_dssp HHHTTSCTTSSCCCCSCBCCSSCCCCH-HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC--
T ss_pred hhhHHHhhhcCCCCCEEECCCCCCCch-HHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC--
Confidence 00 01123456777777777777654 33 24567888888888888777644 44444 688888887543
Q ss_pred eEeCcccccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCCC
Q 003367 713 RRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCH 778 (826)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 778 (826)
+..... ..+++|++|++++| .+..++. +..+++|+.|++++|+
T Consensus 263 ------l~~lp~---------~~~~~L~~L~Ls~N-~l~~~~~-------~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 263 ------LEQVPK---------GLPAKLRVLDLSSN-RLNRAPQ-------PDELPEVDNLTLDGNP 305 (310)
T ss_dssp ------CCSCCS---------CCCSCCSCEECCSC-CCCSCCC-------TTSCCCCSCEECSSTT
T ss_pred ------CCchhh---------hhcCCCCEEECCCC-cCCCCch-------hhhCCCccEEECcCCC
Confidence 221111 12467888888887 4444322 3467888888888865
No 95
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.61 E-value=3.4e-15 Score=163.96 Aligned_cols=303 Identities=15% Similarity=0.069 Sum_probs=179.1
Q ss_pred CCccccchHHHHHHHHHH-cCCCCCCCCCccEEEE--EecCCCcHHHHHHHHhccccccc---CCC-cEEEEEeCCCCCH
Q 003367 77 VSKVRGRDEEKKTIIDLL-LGSSSQEKMSLPIISI--LGTGGVGKTTLARLVFNEVKVDA---HFD-KRIWVCFSDPVDE 149 (826)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vv~I--~G~gGiGKTtLa~~v~~~~~~~~---~f~-~~~wv~~~~~~~~ 149 (826)
+..|+||+++++++.+++ ...........+.+.| +|++|+||||||+++++...... .+. .++|+.+....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 367999999999999988 4221100013346667 99999999999999998543210 122 3577887777788
Q ss_pred HHHHHHHHHHhcccchh-hhhHHHHHHHHHHHhc--CCceeEEeccCCCC------ChhhHHHHHhhhcCC---C--CCc
Q 003367 150 IRVAKAILESFRDVVSA-VAAFDTLLRHIEKSVK--GKKFLLVLDDVWSG------NPTKWEELVSTLKFG---S--PES 215 (826)
Q Consensus 150 ~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~------~~~~~~~l~~~~~~~---~--~~s 215 (826)
..++..++.+++...+. ..+..++...+.+.+. +++++|||||+|.- +...+..+...+... + ...
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 89999999988654221 1223445555555553 78999999999652 123344343333221 2 344
Q ss_pred EEEEecccHHHHhhcc---------ccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcC------CC
Q 003367 216 RILVTTRKEDVAKMMR---------TTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCN------GL 280 (826)
Q Consensus 216 ~iivTtR~~~v~~~~~---------~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~------gl 280 (826)
.+|+||+...+...+. ....+.+.+++.++++++|..++....... .-..+..+.|++.|+ |.
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~G~ 258 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT--VWEPRHLELISDVYGEDKGGDGS 258 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT--SCCHHHHHHHHHHHCGGGTSCCC
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC--CCChHHHHHHHHHHHHhccCCCc
Confidence 5888887655322111 122399999999999999976542111100 011456778999999 99
Q ss_pred chhHHHHhhhhc------CC--cCHHHHHHhhhhhcccccccCcCcchhhhhhccCCcHHHHHHhhhhccCC--CCceeC
Q 003367 281 PLAAKTSGSLLS------LK--TTMEQWKTVLDSEIWKVEDVEKGLLPPLVISYFDLPSIVRRCFSYCAIFP--KGYEIN 350 (826)
Q Consensus 281 PLal~~~~~~l~------~~--~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~fp--~~~~i~ 350 (826)
|..+..+..... .. -+.+.+..+...... ...+.-++..||++.+.++..++.+. .+..++
T Consensus 259 p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~ 329 (412)
T 1w5s_A 259 ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSIHELIILRLIAEATLGGMEWIN 329 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBC
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCcc
Confidence 976555443211 11 123333333322100 22345567889999999999888754 233455
Q ss_pred HHHHHHHHH--H-cCCcccCCCchHHHHHHHHHHHHhhccCccccc
Q 003367 351 KDHLIKLWM--A-QGYLKVEGREDMELIGEECFVNLATRSFFQDFE 393 (826)
Q Consensus 351 ~~~li~~w~--a-~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~~ 393 (826)
...+...+. + .-. .. ... .......++++|.+.+++....
T Consensus 330 ~~~~~~~~~~~~~~~~-~~-~~~-~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 330 AGLLRQRYEDASLTMY-NV-KPR-GYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp HHHHHHHHHHHHHHHS-CC-CCC-CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHHHhhc-CC-CCC-CHHHHHHHHHHHHhCCCEEeec
Confidence 555554442 2 111 00 011 1233456799999999997653
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.61 E-value=1.8e-17 Score=180.25 Aligned_cols=260 Identities=18% Similarity=0.111 Sum_probs=172.6
Q ss_pred ccccccccccCCCCccEEEccCCCCccc----cchhhcCCCCCcEEeccCCC---CCcccchhh-------hcccCCCee
Q 003367 479 SIARLPRNIKKLKHLRYLNLSNNDAIYE----LPEALCDLCNLQTLDVSNCG---NLHALPQGI-------AKLINLRHL 544 (826)
Q Consensus 479 ~~~~lp~~i~~l~~L~~L~Ls~~~~~~~----lp~~i~~L~~L~~L~L~~~~---~~~~lp~~i-------~~L~~L~~L 544 (826)
.+..++..+..+++|++|+|++|.+... ++..+..+++|++|+|++|. +.+.+|..+ ..+++|++|
T Consensus 20 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 20 DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp HHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 5566788889999999999999984444 44457789999999999974 233556555 688999999
Q ss_pred eecCccccc-----CCccCCCCCCCCcCCceeeCcccCcCcccCccc-ccccccCCCceEEcccCCCCChhhhhhhhccC
Q 003367 545 INEGTPLLY-----LPKGLERLTCLRTLSEFTVSDIENVSKAGSLQC-LQNLNHLQGSLVLTALGNVTDVGEAKSAKLES 618 (826)
Q Consensus 545 ~l~~~~l~~-----lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~-L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~ 618 (826)
++++|.+.. +|..+.++++|++|++.+|..... ....+.. +..+... ..-..
T Consensus 100 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~--~~~~l~~~l~~l~~~--------------------~~~~~ 157 (386)
T 2ca6_A 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ--AGAKIARALQELAVN--------------------KKAKN 157 (386)
T ss_dssp ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH--HHHHHHHHHHHHHHH--------------------HHHHT
T ss_pred ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHH--HHHHHHHHHHHHhhh--------------------hhccc
Confidence 999999885 677788999999998877654110 0000000 0000000 00011
Q ss_pred CCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCC-----CCCCcccCccCCcEEEEecCCCC----
Q 003367 619 KKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKI-----ISPSWLMSLTELRMLNLQRCGKC---- 689 (826)
Q Consensus 619 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~-----~~p~~l~~l~~L~~L~L~~~~~~---- 689 (826)
.++|+.|.++.|.++... ...+...+..+++|++|++++|.+.. +.|.++..+++|++|+|++|.+.
T Consensus 158 ~~~L~~L~L~~n~l~~~~----~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~ 233 (386)
T 2ca6_A 158 APPLRSIICGRNRLENGS----MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS 233 (386)
T ss_dssp CCCCCEEECCSSCCTGGG----HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH
T ss_pred CCCCcEEECCCCCCCcHH----HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHH
Confidence 168888888888765322 22233455667899999999998872 22557888999999999999875
Q ss_pred CCCC-CCCCCCccceeeccccccceEeCcccccCCCCccccCccC--cCCCccceeeccccccccc-----ccccccccc
Q 003367 690 EQLP-SLGRLPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSS--VVFPKLKFLEFRDMDEWEE-----WDYVISGQK 761 (826)
Q Consensus 690 ~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~-----~~~~~~~~~ 761 (826)
..+| .+..+++|+.|+|++|. +...+... ++..+ ..+++|++|+|++|. +.. ++ .
T Consensus 234 ~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~---------l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~------~ 296 (386)
T 2ca6_A 234 SALAIALKSWPNLRELGLNDCL-LSARGAAA---------VVDAFSKLENIGLQTLRLQYNE-IELDAVRTLK------T 296 (386)
T ss_dssp HHHHHHGGGCTTCCEEECTTCC-CCHHHHHH---------HHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHH------H
T ss_pred HHHHHHHccCCCcCEEECCCCC-CchhhHHH---------HHHHHhhccCCCeEEEECcCCc-CCHHHHHHHH------H
Confidence 4455 67788999999998765 21110000 00001 237889999999884 333 32 2
Q ss_pred Cc-CCCCccceeeecCCCCCC
Q 003367 762 DI-KIMPRLHRLKLDGCHKLK 781 (826)
Q Consensus 762 ~~-~~l~~L~~L~l~~c~~l~ 781 (826)
.+ ..+++|+.|++++|+.-.
T Consensus 297 ~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 297 VIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHHCTTCCEEECTTSBSCT
T ss_pred HHHhcCCCceEEEccCCcCCc
Confidence 22 357899999999976443
No 97
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.58 E-value=6.1e-14 Score=150.70 Aligned_cols=290 Identities=11% Similarity=0.088 Sum_probs=171.5
Q ss_pred cCCccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCC-----CCHH
Q 003367 76 DVSKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDP-----VDEI 150 (826)
Q Consensus 76 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~ 150 (826)
.+..|+||++++++|.+ +.. +++.|+|++|+|||||++++++... . ..+|+++... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINELN--L---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHHHT--C---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHhcC--C---CEEEEEchhhccccCCCHH
Confidence 45679999999999999 732 5899999999999999999998432 2 2578887642 3445
Q ss_pred HHHHHHHHHhcc------------------cc-----h------hhhhHHHHHHHHHHHhcCCceeEEeccCCCCC---h
Q 003367 151 RVAKAILESFRD------------------VV-----S------AVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGN---P 198 (826)
Q Consensus 151 ~~~~~i~~~l~~------------------~~-----~------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~ 198 (826)
.+...+.+.+.. .. . ......++.+.+.+... ++++|||||++.-+ .
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 555555444321 00 0 11234455555554332 49999999996522 1
Q ss_pred hhHHHHHhhhcCCCCCcEEEEecccHHHHhh----------cc--ccceEEccCCCCchhHHHHHHhhhcCCCcccchhh
Q 003367 199 TKWEELVSTLKFGSPESRILVTTRKEDVAKM----------MR--TTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKL 266 (826)
Q Consensus 199 ~~~~~l~~~~~~~~~~s~iivTtR~~~v~~~----------~~--~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~ 266 (826)
.++......+....++.++|+|+|....... +. ....+.+.+|+.+|+.+++............ .
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~--~- 231 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK--D- 231 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC--C-
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC--c-
Confidence 2233333322222246789999997653221 11 1257899999999999999875421111111 1
Q ss_pred HHHHHHHHHhcCCCchhHHHHhhhhcCCcCHHHHHHh-hhhhcccccccCcCcchhhh-hhc--cCCcHHHHHHhhhhcc
Q 003367 267 TDIGRMIADKCNGLPLAAKTSGSLLSLKTTMEQWKTV-LDSEIWKVEDVEKGLLPPLV-ISY--FDLPSIVRRCFSYCAI 342 (826)
Q Consensus 267 ~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~w~~~-~~~~~~~~~~~~~~i~~~l~-~sy--~~L~~~~k~~fl~~a~ 342 (826)
. ..|++.|+|+|+++..++..+....+...|..- .+... ..+...+. +.+ ..+++..+..+..+|+
T Consensus 232 --~-~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~l~~~~~~~l~~la~ 301 (357)
T 2fna_A 232 --Y-EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK-------KLILKEFENFLHGREIARKRYLNIMRTLSK 301 (357)
T ss_dssp --H-HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-------HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred --H-HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH-------HHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence 1 679999999999999998776432233333211 11000 00111111 111 1688899999999998
Q ss_pred CCCCceeCHHHHHHHHH-HcCCcccCCCchHHHHHHHHHHHHhhccCcccccCCCCCCeeeEEEE-chhHHHH
Q 003367 343 FPKGYEINKDHLIKLWM-AQGYLKVEGREDMELIGEECFVNLATRSFFQDFERSEYDGSIISCKM-HDIVHDF 413 (826)
Q Consensus 343 fp~~~~i~~~~li~~w~-a~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~~~~~~m-hdlv~dl 413 (826)
+. +...+..... ..|. .. .......+++.|.+.+++.... + .|++ |++++++
T Consensus 302 ---g~--~~~~l~~~~~~~~g~-----~~-~~~~~~~~L~~L~~~gli~~~~----~----~y~f~~~~~~~~ 355 (357)
T 2fna_A 302 ---CG--KWSDVKRALELEEGI-----EI-SDSEIYNYLTQLTKHSWIIKEG----E----KYCPSEPLISLA 355 (357)
T ss_dssp ---CB--CHHHHHHHHHHHHCS-----CC-CHHHHHHHHHHHHHTTSEEESS----S----CEEESSHHHHHH
T ss_pred ---CC--CHHHHHHHHHHhcCC-----CC-CHHHHHHHHHHHHhCCCEEecC----C----EEEecCHHHHHh
Confidence 22 4444433221 1121 00 1233567899999999987542 1 3554 6777765
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=6.8e-15 Score=157.29 Aligned_cols=221 Identities=15% Similarity=0.130 Sum_probs=149.9
Q ss_pred CCCcEEeccccccccccccccccc-cccCCCCccEEEccCCCCccccch-hhcCCCCCcE-EeccCCCCCcccchhhhcc
Q 003367 462 TCLRTLCLRCHERHFCLSIARLPR-NIKKLKHLRYLNLSNNDAIYELPE-ALCDLCNLQT-LDVSNCGNLHALPQGIAKL 538 (826)
Q Consensus 462 ~~Lr~L~L~~~~~~~~~~~~~lp~-~i~~l~~L~~L~Ls~~~~~~~lp~-~i~~L~~L~~-L~L~~~~~~~~lp~~i~~L 538 (826)
++++.|+|+ ++ .++.+|. .|.++++|++|+|++|.+.+.+|. .|.++++|+. +.+++|.+....|..|..+
T Consensus 30 ~~l~~L~Ls-----~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l 103 (350)
T 4ay9_X 30 RNAIELRFV-----LT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNL 103 (350)
T ss_dssp TTCSEEEEE-----SC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCC
T ss_pred CCCCEEEcc-----CC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhc
Confidence 689999999 55 6777875 689999999999999996677774 5788998876 5556677555556788999
Q ss_pred cCCCeeeecCcccccCCcc-CCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhcc
Q 003367 539 INLRHLINEGTPLLYLPKG-LERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLE 617 (826)
Q Consensus 539 ~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~ 617 (826)
++|++|++++|.+..+|.. +....++..|++..+..+..++. ..+.
T Consensus 104 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~---------------------------------~~f~ 150 (350)
T 4ay9_X 104 PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER---------------------------------NSFV 150 (350)
T ss_dssp TTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECT---------------------------------TSST
T ss_pred cccccccccccccccCCchhhcccchhhhhhhccccccccccc---------------------------------cchh
Confidence 9999999999999988764 34445555555443322111100 0011
Q ss_pred CC-CcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEec-cCCCCCCCCcccCccCCcEEEEecCCCCCCCCCC
Q 003367 618 SK-KHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICD-YKSKIISPSWLMSLTELRMLNLQRCGKCEQLPSL 695 (826)
Q Consensus 618 ~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~-~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l 695 (826)
.+ ..++.|.++.|.+... +.......+|++|.+.+ |.+..+++..|..+++|+.|+|++|.+.. +|.
T Consensus 151 ~~~~~l~~L~L~~N~i~~i---------~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~- 219 (350)
T 4ay9_X 151 GLSFESVILWLNKNGIQEI---------HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPS- 219 (350)
T ss_dssp TSBSSCEEEECCSSCCCEE---------CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-CCS-
T ss_pred hcchhhhhhccccccccCC---------ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc-cCh-
Confidence 11 2355666666654322 22223446799999975 66777756678999999999999998864 442
Q ss_pred CCCCccceeeccccccceEeCcccccCCCCccccCccCcCCCccceeecccc
Q 003367 696 GRLPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDM 747 (826)
Q Consensus 696 ~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 747 (826)
+.+.+|+.|.+.++..++.++. ...|++|+.+++.++
T Consensus 220 ~~~~~L~~L~~l~~~~l~~lP~---------------l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 220 YGLENLKKLRARSTYNLKKLPT---------------LEKLVALMEASLTYP 256 (350)
T ss_dssp SSCTTCCEEECTTCTTCCCCCC---------------TTTCCSCCEEECSCH
T ss_pred hhhccchHhhhccCCCcCcCCC---------------chhCcChhhCcCCCC
Confidence 2245566666655555544432 236899999998754
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.56 E-value=8.5e-15 Score=151.89 Aligned_cols=103 Identities=21% Similarity=0.240 Sum_probs=73.6
Q ss_pred hccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhc
Q 003367 458 FDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAK 537 (826)
Q Consensus 458 ~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~ 537 (826)
+..+++|+.|+++ ++ .+..+| .+..+++|++|+|++|. +..+|. +.++++|++|++++|. +..+| .+..
T Consensus 42 ~~~l~~L~~L~l~-----~~-~i~~~~-~~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~ 110 (291)
T 1h6t_A 42 QNELNSIDQIIAN-----NS-DIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENK-VKDLS-SLKD 110 (291)
T ss_dssp HHHHHTCCEEECT-----TS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCGG-GGTT
T ss_pred hhhcCcccEEEcc-----CC-CcccCh-hHhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCc-CCCCh-hhcc
Confidence 3566778888887 44 455554 47778888888888887 666665 8888888888888887 44454 4788
Q ss_pred ccCCCeeeecCcccccCCccCCCCCCCCcCCceee
Q 003367 538 LINLRHLINEGTPLLYLPKGLERLTCLRTLSEFTV 572 (826)
Q Consensus 538 L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~ 572 (826)
+++|++|++++|.+..++ .+..+++|+.|++.++
T Consensus 111 l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n 144 (291)
T 1h6t_A 111 LKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN 144 (291)
T ss_dssp CTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSS
T ss_pred CCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCC
Confidence 888888888888777663 4666777777766544
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.55 E-value=3.3e-14 Score=144.24 Aligned_cols=175 Identities=17% Similarity=0.176 Sum_probs=134.7
Q ss_pred CCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCcccccCCcc-CCCCCCCCcCCc
Q 003367 491 KHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPLLYLPKG-LERLTCLRTLSE 569 (826)
Q Consensus 491 ~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~ 569 (826)
...++++++++. +..+|..+. .+|+.|++++|.+.+..|..+.++++|++|++++|.+..++.. +.++++|++|++
T Consensus 14 ~~~~~l~~~~~~-l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKS-LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCC-CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCC-ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 457889999998 889998775 6899999999997777777899999999999999999877654 788888888876
Q ss_pred eeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCCcCCceeeEeecCCCcccccchHHHhhcCC
Q 003367 570 FTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQ 649 (826)
Q Consensus 570 ~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~ 649 (826)
.++..... ....+.
T Consensus 91 ~~n~l~~~------------------------------------------------------------------~~~~~~ 104 (251)
T 3m19_A 91 ANNQLASL------------------------------------------------------------------PLGVFD 104 (251)
T ss_dssp TTSCCCCC------------------------------------------------------------------CTTTTT
T ss_pred CCCccccc------------------------------------------------------------------ChhHhc
Confidence 55433100 011234
Q ss_pred CCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC-CCCCCCccceeeccccccceEeCcccccCCCCccc
Q 003367 650 PSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP-SLGRLPSLESLVVEALSSVRRVGNEFLGIESDDIS 728 (826)
Q Consensus 650 ~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~ 728 (826)
.+++|++|+|++|.+..+++..+..+++|++|+|++|.+.+..+ .++.+++|+.|+|+++. +.+..+
T Consensus 105 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~--------l~~~~~---- 172 (251)
T 3m19_A 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ--------LQSVPH---- 172 (251)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--------CSCCCT----
T ss_pred ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc--------CCccCH----
Confidence 56789999999999998867778899999999999999886666 68889999999998653 222111
Q ss_pred cCccCcCCCccceeeccccc
Q 003367 729 LSSSSVVFPKLKFLEFRDMD 748 (826)
Q Consensus 729 ~~~~~~~~~~L~~L~l~~~~ 748 (826)
..+..+++|+.|++++|+
T Consensus 173 --~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 173 --GAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp --TTTTTCTTCCEEECCSCC
T ss_pred --HHHhCCCCCCEEEeeCCc
Confidence 113367888888888874
No 101
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.54 E-value=6.3e-16 Score=166.23 Aligned_cols=226 Identities=14% Similarity=0.039 Sum_probs=123.1
Q ss_pred chhhhchhhhccCCCCcEEeccccccccccccccccccccCCC-CccEEEccCCCCccccchhhcCC-----CCCcEEec
Q 003367 449 VADIALPSLFDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLK-HLRYLNLSNNDAIYELPEALCDL-----CNLQTLDV 522 (826)
Q Consensus 449 ~l~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~-~L~~L~Ls~~~~~~~lp~~i~~L-----~~L~~L~L 522 (826)
.+...+|..+...++|++|+|++|.+... ....+...+..++ +|++|+|++|.+....+..+..+ ++|++|+|
T Consensus 9 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 87 (362)
T 3goz_A 9 PGSNPVEEFTSIPHGVTSLDLSLNNLYSI-STVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNL 87 (362)
T ss_dssp TTCCHHHHHHTSCTTCCEEECTTSCGGGS-CHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred cchHHHHHHHhCCCCceEEEccCCCCChH-HHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEEC
Confidence 34445566666677788888884433211 1111125667777 78888888887444445555554 88888888
Q ss_pred cCCCCCcccchhhhcc-----cCCCeeeecCcccccCCcc-----CCCC-CCCCcCCceeeCcccCcCcccCcccccccc
Q 003367 523 SNCGNLHALPQGIAKL-----INLRHLINEGTPLLYLPKG-----LERL-TCLRTLSEFTVSDIENVSKAGSLQCLQNLN 591 (826)
Q Consensus 523 ~~~~~~~~lp~~i~~L-----~~L~~L~l~~~~l~~lp~~-----i~~L-~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~ 591 (826)
++|.+....+..+... ++|++|++++|.+...+.. +..+ ++|++|++.+|.....
T Consensus 88 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-------------- 153 (362)
T 3goz_A 88 SGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK-------------- 153 (362)
T ss_dssp CSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS--------------
T ss_pred cCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH--------------
Confidence 8888655555544443 7888888888887755432 3332 4666666655433110
Q ss_pred cCCCceEEcccCCCCChhhhhhhhccCCC-cCCceeeEeecCCCcccccchHHHhhcCCCC-CCcCeEEEeccCCCCCC-
Q 003367 592 HLQGSLVLTALGNVTDVGEAKSAKLESKK-HLVCLRLEFIKLGRVELVDKDNEVLEALQPS-PDLEKLTICDYKSKIIS- 668 (826)
Q Consensus 592 ~L~~~l~~~~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~-~~L~~L~L~~~~~~~~~- 668 (826)
........+.... +|+.|+++.|.++... ...+...+... ++|++|+|++|.+....
T Consensus 154 ----------------~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~----~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~ 213 (362)
T 3goz_A 154 ----------------SSDELIQILAAIPANVNSLNLRGNNLASKN----CAELAKFLASIPASVTSLDLSANLLGLKSY 213 (362)
T ss_dssp ----------------CHHHHHHHHHTSCTTCCEEECTTSCGGGSC----HHHHHHHHHTSCTTCCEEECTTSCGGGSCH
T ss_pred ----------------HHHHHHHHHhcCCccccEeeecCCCCchhh----HHHHHHHHHhCCCCCCEEECCCCCCChhHH
Confidence 0011112223333 6666666666543322 11222233333 36666666666655421
Q ss_pred ---CCcccC-ccCCcEEEEecCCCCCCCC-----CCCCCCccceeecccc
Q 003367 669 ---PSWLMS-LTELRMLNLQRCGKCEQLP-----SLGRLPSLESLVVEAL 709 (826)
Q Consensus 669 ---p~~l~~-l~~L~~L~L~~~~~~~~l~-----~l~~l~~L~~L~L~~~ 709 (826)
+..+.. .++|++|+|++|.+.+..+ .+..+++|+.|+|++|
T Consensus 214 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 214 AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence 223333 3466666666666544221 2455566666666544
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.54 E-value=3.4e-14 Score=161.66 Aligned_cols=103 Identities=21% Similarity=0.240 Sum_probs=69.7
Q ss_pred hccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhc
Q 003367 458 FDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAK 537 (826)
Q Consensus 458 ~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~ 537 (826)
+..+++|+.|+++ .+ .+..+| .+..|++|++|+|++|. +..+|. +..+++|+.|+|++|. +..+| .+..
T Consensus 39 ~~~L~~L~~L~l~-----~n-~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~ 107 (605)
T 1m9s_A 39 QNELNSIDQIIAN-----NS-DIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKD 107 (605)
T ss_dssp HHHHTTCCCCBCT-----TC-CCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTT
T ss_pred hhcCCCCCEEECc-----CC-CCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCC-CCCCh-hhcc
Confidence 4566777777777 44 444454 46777777777777777 555555 7777777777777776 34444 5777
Q ss_pred ccCCCeeeecCcccccCCccCCCCCCCCcCCceee
Q 003367 538 LINLRHLINEGTPLLYLPKGLERLTCLRTLSEFTV 572 (826)
Q Consensus 538 L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~ 572 (826)
+++|++|++++|.+..+| .+..+++|+.|++..|
T Consensus 108 l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N 141 (605)
T 1m9s_A 108 LKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN 141 (605)
T ss_dssp CTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSS
T ss_pred CCCCCEEEecCCCCCCCc-cccCCCccCEEECCCC
Confidence 777777777777777653 4666777777766554
No 103
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.53 E-value=3.2e-15 Score=160.75 Aligned_cols=246 Identities=14% Similarity=0.104 Sum_probs=140.7
Q ss_pred ccccccCCCCccEEEccCCCCccccc-----hhhcCCC-CCcEEeccCCCCCcccchhhhcc-----cCCCeeeecCccc
Q 003367 483 LPRNIKKLKHLRYLNLSNNDAIYELP-----EALCDLC-NLQTLDVSNCGNLHALPQGIAKL-----INLRHLINEGTPL 551 (826)
Q Consensus 483 lp~~i~~l~~L~~L~Ls~~~~~~~lp-----~~i~~L~-~L~~L~L~~~~~~~~lp~~i~~L-----~~L~~L~l~~~~l 551 (826)
+|..+....+|++|+|++|. ++..+ ..+..++ +|++|+|++|.+....+..+..+ ++|++|++++|.+
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 44445555568888888887 44444 5667777 78888888887655556666665 7888888888877
Q ss_pred ccCCcc-----CCCC-CCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccC-CCcCCc
Q 003367 552 LYLPKG-----LERL-TCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLES-KKHLVC 624 (826)
Q Consensus 552 ~~lp~~-----i~~L-~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~-~~~L~~ 624 (826)
...+.. +..+ ++|++|++..|..... . .......+.. ..+|+.
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~--~----------------------------~~~l~~~l~~~~~~L~~ 142 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWNDFSSK--S----------------------------SSEFKQAFSNLPASITS 142 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS--C----------------------------HHHHHHHHTTSCTTCCE
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCcCCcH--H----------------------------HHHHHHHHHhCCCceeE
Confidence 744332 3444 6777777766554111 0 0011112233 246777
Q ss_pred eeeEeecCCCcccccchHHHhhcCCCCC-CcCeEEEeccCCCCCCCCccc----Cc-cCCcEEEEecCCCCCC----CC-
Q 003367 625 LRLEFIKLGRVELVDKDNEVLEALQPSP-DLEKLTICDYKSKIISPSWLM----SL-TELRMLNLQRCGKCEQ----LP- 693 (826)
Q Consensus 625 L~l~~~~l~~~~~~~~~~~~~~~l~~~~-~L~~L~L~~~~~~~~~p~~l~----~l-~~L~~L~L~~~~~~~~----l~- 693 (826)
|++++|.++... ...+...+..++ +|++|+|++|.+....+..+. .+ ++|++|+|++|.+... ++
T Consensus 143 L~Ls~N~l~~~~----~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~ 218 (362)
T 3goz_A 143 LNLRGNDLGIKS----SDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY 218 (362)
T ss_dssp EECTTSCGGGSC----HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred EEccCCcCCHHH----HHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH
Confidence 777776654332 123333444444 788888888877665444333 33 5788888888876542 22
Q ss_pred CCCC-CCccceeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccc-------cccccccccccccCcCC
Q 003367 694 SLGR-LPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMD-------EWEEWDYVISGQKDIKI 765 (826)
Q Consensus 694 ~l~~-l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~l~~~~~~~~~~~~~~~ 765 (826)
.+.. .++|+.|+|+++. +...+... +......+++|+.|++++|. .+..+...+. .
T Consensus 219 ~l~~~~~~L~~L~Ls~N~-l~~~~~~~---------l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~------~ 282 (362)
T 3goz_A 219 IFSSIPNHVVSLNLCLNC-LHGPSLEN---------LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFP------N 282 (362)
T ss_dssp HHHHSCTTCCEEECCSSC-CCCCCHHH---------HHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTST------T
T ss_pred HHhcCCCCceEEECcCCC-CCcHHHHH---------HHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhc------c
Confidence 2333 3478888887653 22211110 00112356778888887774 1332222111 3
Q ss_pred CCccceeeecCCCC
Q 003367 766 MPRLHRLKLDGCHK 779 (826)
Q Consensus 766 l~~L~~L~l~~c~~ 779 (826)
+++|+.|++++|+.
T Consensus 283 l~~L~~LdL~~N~l 296 (362)
T 3goz_A 283 IQKIILVDKNGKEI 296 (362)
T ss_dssp CCEEEEECTTSCBC
T ss_pred CCceEEEecCCCcC
Confidence 66788888877653
No 104
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.52 E-value=1e-15 Score=176.95 Aligned_cols=337 Identities=17% Similarity=0.097 Sum_probs=168.2
Q ss_pred CCcceEEEEEecCCCCccccCCcccchhhhchhhhccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCC-
Q 003367 424 ETKLRSLSIVHKSNSSTIFPGIRDSVADIALPSLFDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNND- 502 (826)
Q Consensus 424 ~~~lr~l~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~- 502 (826)
.++++.|++..+.... ...++..+.++++|++|+|++|.+.+. ....++.....+++|++|++++|.
T Consensus 129 ~~~L~~L~L~~~~~~~-----------~~~l~~~~~~~~~L~~L~L~~~~i~~~-~~~~l~~~~~~~~~L~~L~l~~~~~ 196 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFS-----------TDGLAAIAATCRNLKELDLRESDVDDV-SGHWLSHFPDTYTSLVSLNISCLAS 196 (594)
T ss_dssp CTTCCEEEEESCEEEE-----------HHHHHHHHHHCTTCCEEECTTCEEECC-CGGGGGGSCTTCCCCCEEECTTCCS
T ss_pred CCCCcEEeCCCcCCCC-----------HHHHHHHHHhCCCCCEEeCcCCccCCc-chHHHHHHhhcCCcCcEEEecccCC
Confidence 3577888877652110 111345566889999999985543322 222344444577899999999885
Q ss_pred Cc--cccchhhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCc-------ccccCCccCCCCCCCCcC------
Q 003367 503 AI--YELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGT-------PLLYLPKGLERLTCLRTL------ 567 (826)
Q Consensus 503 ~~--~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~-------~l~~lp~~i~~L~~L~~L------ 567 (826)
.+ ..++..+..+++|++|++++|.....+|..+..+++|++|+++.+ .+..++..+.++++|+.|
T Consensus 197 ~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~ 276 (594)
T 2p1m_B 197 EVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA 276 (594)
T ss_dssp CCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC
T ss_pred cCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCccc
Confidence 11 123333456789999999988656668888888889999885533 223334444555555554
Q ss_pred ------------------CceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCCcCCceeeEe
Q 003367 568 ------------------SEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKHLVCLRLEF 629 (826)
Q Consensus 568 ------------------~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 629 (826)
++..+.. ........+..+++|.. +.+... + ...........+++|+.|++..
T Consensus 277 ~~~~l~~~~~~~~~L~~L~L~~~~l-~~~~l~~~~~~~~~L~~----L~l~~~--~--~~~~l~~l~~~~~~L~~L~L~~ 347 (594)
T 2p1m_B 277 VPAYLPAVYSVCSRLTTLNLSYATV-QSYDLVKLLCQCPKLQR----LWVLDY--I--EDAGLEVLASTCKDLRELRVFP 347 (594)
T ss_dssp CGGGGGGGHHHHTTCCEEECTTCCC-CHHHHHHHHTTCTTCCE----EEEEGG--G--HHHHHHHHHHHCTTCCEEEEEC
T ss_pred chhhHHHHHHhhCCCCEEEccCCCC-CHHHHHHHHhcCCCcCE----EeCcCc--c--CHHHHHHHHHhCCCCCEEEEec
Confidence 3222221 00000000011111111 111100 0 0000111112344555555532
Q ss_pred ec----CCCcccccchHHHhhcC-CCCCCcCeEEEeccCCCCCCCCccc-CccCCcEEEEe-----cCCCCCCCCC----
Q 003367 630 IK----LGRVELVDKDNEVLEAL-QPSPDLEKLTICDYKSKIISPSWLM-SLTELRMLNLQ-----RCGKCEQLPS---- 694 (826)
Q Consensus 630 ~~----l~~~~~~~~~~~~~~~l-~~~~~L~~L~L~~~~~~~~~p~~l~-~l~~L~~L~L~-----~~~~~~~l~~---- 694 (826)
+. ...+.. ....+..+ ..+++|++|.+.++.++...+..+. .+++|+.|+|+ +|...+..|.
T Consensus 348 ~~~~g~~~~~~l---~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~ 424 (594)
T 2p1m_B 348 SEPFVMEPNVAL---TEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGF 424 (594)
T ss_dssp SCTTCSSCSSCC---CHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHH
T ss_pred CcccccccCCCC---CHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHH
Confidence 10 000000 11111111 1245666666655555433222232 46677777776 2222222221
Q ss_pred ---CCCCCccceeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCCCccce
Q 003367 695 ---LGRLPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHR 771 (826)
Q Consensus 695 ---l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~ 771 (826)
+..+++|+.|+|++ .+.. ..+... ...+++|+.|++++|. +..... ..-...+++|+.
T Consensus 425 ~~l~~~~~~L~~L~L~~--~l~~--~~~~~l----------~~~~~~L~~L~L~~~~-i~~~~~----~~l~~~~~~L~~ 485 (594)
T 2p1m_B 425 GAIVEHCKDLRRLSLSG--LLTD--KVFEYI----------GTYAKKMEMLSVAFAG-DSDLGM----HHVLSGCDSLRK 485 (594)
T ss_dssp HHHHHHCTTCCEEECCS--SCCH--HHHHHH----------HHHCTTCCEEEEESCC-SSHHHH----HHHHHHCTTCCE
T ss_pred HHHHhhCCCccEEeecC--cccH--HHHHHH----------HHhchhccEeeccCCC-CcHHHH----HHHHhcCCCcCE
Confidence 34456677776653 1110 000000 1137888899888884 322111 011135899999
Q ss_pred eeecCCCCCCC-CCCCCcccCCcceEEEccccc
Q 003367 772 LKLDGCHKLKA-LPDHLLLTTKMNELTMNWCSV 803 (826)
Q Consensus 772 L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~c~~ 803 (826)
|+|++|+.... ++..+..+++|+.|++++|+.
T Consensus 486 L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 486 LEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp EEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred EECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 99999876221 222344578999999999986
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.50 E-value=5e-14 Score=146.07 Aligned_cols=170 Identities=24% Similarity=0.241 Sum_probs=119.5
Q ss_pred ccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCcccccCCccCCCCCCCCc
Q 003367 487 IKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPLLYLPKGLERLTCLRT 566 (826)
Q Consensus 487 i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~ 566 (826)
+..+++|++|++++|. +..+|. +..+++|++|++++|.+ ..++. +..+++|++|++++|.+..+|. +..+++|++
T Consensus 42 ~~~l~~L~~L~l~~~~-i~~~~~-~~~l~~L~~L~L~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 116 (291)
T 1h6t_A 42 QNELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGNKL-TDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKS 116 (291)
T ss_dssp HHHHHTCCEEECTTSC-CCCCTT-GGGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCE
T ss_pred hhhcCcccEEEccCCC-cccChh-HhcCCCCCEEEccCCcc-CCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCE
Confidence 4678899999999998 777775 89999999999999985 45555 9999999999999999988764 888899999
Q ss_pred CCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCCcCCceeeEeecCCCcccccchHHHhh
Q 003367 567 LSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNEVLE 646 (826)
Q Consensus 567 L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 646 (826)
|++.++.... + ..+..+++|+.|+++.|.+... .
T Consensus 117 L~L~~n~i~~----------~--------------------------~~l~~l~~L~~L~l~~n~l~~~----------~ 150 (291)
T 1h6t_A 117 LSLEHNGISD----------I--------------------------NGLVHLPQLESLYLGNNKITDI----------T 150 (291)
T ss_dssp EECTTSCCCC----------C--------------------------GGGGGCTTCCEEECCSSCCCCC----------G
T ss_pred EECCCCcCCC----------C--------------------------hhhcCCCCCCEEEccCCcCCcc----------h
Confidence 8776654310 0 0122344555666665554321 2
Q ss_pred cCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCCCCCCCCccceeeccccc
Q 003367 647 ALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLPSLGRLPSLESLVVEALS 710 (826)
Q Consensus 647 ~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 710 (826)
.+..+++|++|++++|.+....| +..+++|+.|+|++|.+.+ ++.+..+++|+.|+++++.
T Consensus 151 ~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 151 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEEEEEEE
T ss_pred hhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-ChhhccCCCCCEEECcCCc
Confidence 34456677777777777766533 6667777777777776643 4556666777777776543
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.49 E-value=3.2e-14 Score=138.37 Aligned_cols=105 Identities=13% Similarity=0.133 Sum_probs=61.5
Q ss_pred ccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcc
Q 003367 459 DRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKL 538 (826)
Q Consensus 459 ~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L 538 (826)
..+++|+.|+++ ++ .+..+| .+..+++|++|++++|. +..++ .+..+++|++|++++|.+....|..++.+
T Consensus 41 ~~l~~L~~L~l~-----~n-~i~~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 111 (197)
T 4ezg_A 41 AQMNSLTYITLA-----NI-NVTDLT-GIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGL 111 (197)
T ss_dssp HHHHTCCEEEEE-----SS-CCSCCT-TGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTC
T ss_pred hhcCCccEEecc-----CC-CccChH-HHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccCcccChhhcCC
Confidence 445566666666 33 444555 46666666666666664 44444 46666666666666666555455666666
Q ss_pred cCCCeeeecCccccc-CCccCCCCCCCCcCCceee
Q 003367 539 INLRHLINEGTPLLY-LPKGLERLTCLRTLSEFTV 572 (826)
Q Consensus 539 ~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~~~~~ 572 (826)
++|++|++++|.+.. .|..++++++|++|++.+|
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n 146 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSC
T ss_pred CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCC
Confidence 666666666666553 3444555555555544433
No 107
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.49 E-value=9.6e-16 Score=177.13 Aligned_cols=131 Identities=21% Similarity=0.192 Sum_probs=89.1
Q ss_pred CCcceEEEEEecCCCCccccCCcccchhhhchhhh-ccCCCCcEEecccccccccccccc--ccccccCCCCccEEEccC
Q 003367 424 ETKLRSLSIVHKSNSSTIFPGIRDSVADIALPSLF-DRLTCLRTLCLRCHERHFCLSIAR--LPRNIKKLKHLRYLNLSN 500 (826)
Q Consensus 424 ~~~lr~l~l~~~~~~~~~~~~~~~~~l~~~~~~~~-~~l~~Lr~L~L~~~~~~~~~~~~~--lp~~i~~l~~L~~L~Ls~ 500 (826)
...+++|++..+.... ..+..+ ..+++|++|+|+ +|..+.. ++..+..+++|++|+|++
T Consensus 104 ~~~L~~L~L~~~~~~~-------------~~~~~l~~~~~~L~~L~L~-----~~~~~~~~~l~~~~~~~~~L~~L~L~~ 165 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTD-------------DCLELIAKSFKNFKVLVLS-----SCEGFSTDGLAAIAATCRNLKELDLRE 165 (594)
T ss_dssp CTTCCEEEEESCBCCH-------------HHHHHHHHHCTTCCEEEEE-----SCEEEEHHHHHHHHHHCTTCCEEECTT
T ss_pred CCCCCeEEeeCcEEcH-------------HHHHHHHHhCCCCcEEeCC-----CcCCCCHHHHHHHHHhCCCCCEEeCcC
Confidence 4578899988773211 112333 368999999999 4433333 455556899999999999
Q ss_pred CCCccc----cchhhcCCCCCcEEeccCCC--CC-cccchhhhcccCCCeeeecCc-ccccCCccCCCCCCCCcCCceee
Q 003367 501 NDAIYE----LPEALCDLCNLQTLDVSNCG--NL-HALPQGIAKLINLRHLINEGT-PLLYLPKGLERLTCLRTLSEFTV 572 (826)
Q Consensus 501 ~~~~~~----lp~~i~~L~~L~~L~L~~~~--~~-~~lp~~i~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~~~~~ 572 (826)
|.+... ++.....+++|++|++++|. .. ..++..+.++++|++|++++| .+..+|..+.++++|++|.+..+
T Consensus 166 ~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 166 SDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp CEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred CccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 983332 33334477899999999986 11 123333456799999999977 55567777888899999875443
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.48 E-value=9.5e-14 Score=158.03 Aligned_cols=170 Identities=23% Similarity=0.238 Sum_probs=135.7
Q ss_pred ccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCcccccCCccCCCCCCCCc
Q 003367 487 IKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPLLYLPKGLERLTCLRT 566 (826)
Q Consensus 487 i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~ 566 (826)
+..|.+|++|++++|. +..+|. +..+++|+.|+|++|.+. .+|. +..+++|++|++++|.+..+| .+..+++|+.
T Consensus 39 ~~~L~~L~~L~l~~n~-i~~l~~-l~~l~~L~~L~Ls~N~l~-~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 39 QNELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGNKLT-DIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKS 113 (605)
T ss_dssp HHHHTTCCCCBCTTCC-CCCCTT-GGGCTTCCEEECTTSCCC-CCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCE
T ss_pred hhcCCCCCEEECcCCC-CCCChH-HccCCCCCEEEeeCCCCC-CChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCE
Confidence 5678999999999998 778874 999999999999999854 4554 999999999999999999876 6889999999
Q ss_pred CCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCCcCCceeeEeecCCCcccccchHHHhh
Q 003367 567 LSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNEVLE 646 (826)
Q Consensus 567 L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 646 (826)
|++..+.... + ..+..+++|+.|+|+.|.+... .
T Consensus 114 L~Ls~N~l~~-------l-----------------------------~~l~~l~~L~~L~Ls~N~l~~l----------~ 147 (605)
T 1m9s_A 114 LSLEHNGISD-------I-----------------------------NGLVHLPQLESLYLGNNKITDI----------T 147 (605)
T ss_dssp EECTTSCCCC-------C-----------------------------GGGGGCTTCSEEECCSSCCCCC----------G
T ss_pred EEecCCCCCC-------C-----------------------------ccccCCCccCEEECCCCccCCc----------h
Confidence 9877664410 0 1134456777778877765432 3
Q ss_pred cCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCCCCCCCCccceeeccccc
Q 003367 647 ALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLPSLGRLPSLESLVVEALS 710 (826)
Q Consensus 647 ~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 710 (826)
.+..+++|+.|+|++|.+.+.+| +..+++|+.|+|++|.+.+ ++.+..+++|+.|+|++|.
T Consensus 148 ~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 148 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp GGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEECCSEE
T ss_pred hhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-ChHHccCCCCCEEEccCCc
Confidence 46678899999999999888744 8889999999999998764 5778889999999998655
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.48 E-value=1.1e-13 Score=155.76 Aligned_cols=94 Identities=22% Similarity=0.317 Sum_probs=74.9
Q ss_pred CCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCC
Q 003367 462 TCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINL 541 (826)
Q Consensus 462 ~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L 541 (826)
.+|++|+|+ ++ .+..+|..+. ++|++|+|++|. ++.+| ..+++|++|++++|.+. .+|. +.. +|
T Consensus 59 ~~L~~L~Ls-----~n-~L~~lp~~l~--~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~l~-~ip~-l~~--~L 122 (571)
T 3cvr_A 59 NQFSELQLN-----RL-NLSSLPDNLP--PQITVLEITQNA-LISLP---ELPASLEYLDACDNRLS-TLPE-LPA--SL 122 (571)
T ss_dssp TTCSEEECC-----SS-CCSCCCSCCC--TTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSCCS-CCCC-CCT--TC
T ss_pred CCccEEEeC-----CC-CCCccCHhHc--CCCCEEECcCCC-Ccccc---cccCCCCEEEccCCCCC-Ccch-hhc--CC
Confidence 389999998 55 5566787663 789999999998 67888 55789999999999854 4887 655 89
Q ss_pred CeeeecCcccccCCccCCCCCCCCcCCceeeCc
Q 003367 542 RHLINEGTPLLYLPKGLERLTCLRTLSEFTVSD 574 (826)
Q Consensus 542 ~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~ 574 (826)
++|++++|.+..+|. .+++|+.|++.+|..
T Consensus 123 ~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l 152 (571)
T 3cvr_A 123 KHLDVDNNQLTMLPE---LPALLEYINADNNQL 152 (571)
T ss_dssp CEEECCSSCCSCCCC---CCTTCCEEECCSSCC
T ss_pred CEEECCCCcCCCCCC---cCccccEEeCCCCcc
Confidence 999999999998887 577888887765543
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.48 E-value=3.3e-14 Score=145.00 Aligned_cols=167 Identities=23% Similarity=0.204 Sum_probs=116.9
Q ss_pred cCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhccc
Q 003367 460 RLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLI 539 (826)
Q Consensus 460 ~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~ 539 (826)
.+.++..++++ .+ .+..++ .+..+++|++|++++|. +..+| .+..+++|++|++++|. +..+|. +..++
T Consensus 17 ~l~~l~~l~l~-----~~-~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~ 85 (263)
T 1xeu_A 17 GLANAVKQNLG-----KQ-SVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLT 85 (263)
T ss_dssp HHHHHHHHHHT-----CS-CTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCS
T ss_pred HHHHHHHHHhc-----CC-Cccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCc-cCCChh-hccCC
Confidence 45556667776 44 455555 57788889999998887 77777 58888899999998888 445555 88888
Q ss_pred CCCeeeecCcccccCCccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCC
Q 003367 540 NLRHLINEGTPLLYLPKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESK 619 (826)
Q Consensus 540 ~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~ 619 (826)
+|++|++++|.+..+|.... ++|++|++.++..
T Consensus 86 ~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l--------------------------------------------- 118 (263)
T 1xeu_A 86 KLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNEL--------------------------------------------- 118 (263)
T ss_dssp SCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCC---------------------------------------------
T ss_pred CCCEEECCCCccCCcCcccc--CcccEEEccCCcc---------------------------------------------
Confidence 89999988888877765332 5666665544322
Q ss_pred CcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCCCCCCCC
Q 003367 620 KHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLPSLGRLP 699 (826)
Q Consensus 620 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~ 699 (826)
+. ...+..+++|+.|++++|.+.++ | .+..+++|+.|+|++|.+.+. +.+..++
T Consensus 119 -------------~~----------~~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~ 172 (263)
T 1xeu_A 119 -------------RD----------TDSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-GGLTRLK 172 (263)
T ss_dssp -------------SB----------SGGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-TTSTTCC
T ss_pred -------------CC----------ChhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-HHhccCC
Confidence 10 01234556777777777777775 4 577778888888888877654 6677777
Q ss_pred ccceeeccccc
Q 003367 700 SLESLVVEALS 710 (826)
Q Consensus 700 ~L~~L~L~~~~ 710 (826)
+|+.|+++++.
T Consensus 173 ~L~~L~l~~N~ 183 (263)
T 1xeu_A 173 KVNWIDLTGQK 183 (263)
T ss_dssp CCCEEEEEEEE
T ss_pred CCCEEeCCCCc
Confidence 88888877544
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.47 E-value=5.3e-13 Score=131.05 Aligned_cols=86 Identities=27% Similarity=0.351 Sum_probs=46.9
Q ss_pred ccccccccccCCCCccEEEccCCCCccccc-hhhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCcccccCCcc
Q 003367 479 SIARLPRNIKKLKHLRYLNLSNNDAIYELP-EALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPLLYLPKG 557 (826)
Q Consensus 479 ~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~ 557 (826)
.+..+|..+ ..+|++|++++|. +..+| ..+.++++|++|++++|.+....+..+..+++|++|++++|.+..+|..
T Consensus 18 ~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 94 (208)
T 2o6s_A 18 GRTSVPTGI--PAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNG 94 (208)
T ss_dssp CCSSCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CccCCCCCC--CCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHh
Confidence 344455443 3466777777766 33443 3356666777777776664433333456666666666666665554433
Q ss_pred -CCCCCCCCcC
Q 003367 558 -LERLTCLRTL 567 (826)
Q Consensus 558 -i~~L~~L~~L 567 (826)
+.++++|++|
T Consensus 95 ~~~~l~~L~~L 105 (208)
T 2o6s_A 95 VFDKLTQLKEL 105 (208)
T ss_dssp TTTTCTTCCEE
T ss_pred HhcCccCCCEE
Confidence 3334444433
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.46 E-value=1e-13 Score=134.84 Aligned_cols=149 Identities=22% Similarity=0.274 Sum_probs=106.4
Q ss_pred ccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCccccc-CCccCCCCCCCC
Q 003367 487 IKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPLLY-LPKGLERLTCLR 565 (826)
Q Consensus 487 i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~-lp~~i~~L~~L~ 565 (826)
...+++|++|++++|. +..+| .+..+++|++|++++|. ...+ ..+..+++|++|++++|.+.. .|..++.+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n~-~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESCC-CSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCC-ccChH-HHhcCCCCCEEEccCCC-CCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 3667899999999998 77888 69999999999999995 4444 478899999999999998884 567788888888
Q ss_pred cCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCCcCCceeeEeecCCCcccccchHHHh
Q 003367 566 TLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNEVL 645 (826)
Q Consensus 566 ~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 645 (826)
+|++..+.... ..+
T Consensus 116 ~L~Ls~n~i~~------------------------------------------------------------------~~~ 129 (197)
T 4ezg_A 116 LLDISHSAHDD------------------------------------------------------------------SIL 129 (197)
T ss_dssp EEECCSSBCBG------------------------------------------------------------------GGH
T ss_pred EEEecCCccCc------------------------------------------------------------------HhH
Confidence 87665543310 112
Q ss_pred hcCCCCCCcCeEEEeccC-CCCCCCCcccCccCCcEEEEecCCCCCCCCCCCCCCccceeeccc
Q 003367 646 EALQPSPDLEKLTICDYK-SKIISPSWLMSLTELRMLNLQRCGKCEQLPSLGRLPSLESLVVEA 708 (826)
Q Consensus 646 ~~l~~~~~L~~L~L~~~~-~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~ 708 (826)
..+..+++|++|++++|. +..+ | .+..+++|+.|++++|.+.+ ++.+..+++|+.|++++
T Consensus 130 ~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~-~~~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 130 TKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHD-YRGIEDFPKLNQLYAFS 190 (197)
T ss_dssp HHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCC-CTTGGGCSSCCEEEECB
T ss_pred HHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcC-hHHhccCCCCCEEEeeC
Confidence 233455677777777776 5544 4 56677777777777776653 44566666677776664
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.46 E-value=1.9e-13 Score=135.27 Aligned_cols=99 Identities=24% Similarity=0.308 Sum_probs=72.3
Q ss_pred cEEeccccccccccccccccccccCCCCccEEEccCCCCccccc-hhhcCCCCCcEEeccCCCCCcccchhhhcccCCCe
Q 003367 465 RTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELP-EALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRH 543 (826)
Q Consensus 465 r~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 543 (826)
+.++++ ++ .+..+|..+. .+|++|+|++|. +..+| ..|..+++|++|+|++|.+....|..|.++++|++
T Consensus 14 ~~v~c~-----~~-~l~~iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~ 84 (220)
T 2v9t_B 14 NIVDCR-----GK-GLTEIPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS 84 (220)
T ss_dssp TEEECT-----TS-CCSSCCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCE
T ss_pred CEEEcC-----CC-CcCcCCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCE
Confidence 456666 44 5667776654 688888888888 44444 46888888888888888866666888888888888
Q ss_pred eeecCcccccCCcc-CCCCCCCCcCCceee
Q 003367 544 LINEGTPLLYLPKG-LERLTCLRTLSEFTV 572 (826)
Q Consensus 544 L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~ 572 (826)
|++++|.+..+|.. +..+++|++|++.++
T Consensus 85 L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 114 (220)
T 2v9t_B 85 LVLYGNKITELPKSLFEGLFSLQLLLLNAN 114 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCcCCccCHhHccCCCCCCEEECCCC
Confidence 88888888877765 455666666655443
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.43 E-value=3.6e-13 Score=151.42 Aligned_cols=74 Identities=23% Similarity=0.280 Sum_probs=61.4
Q ss_pred CCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCcccccCCccCCCCCCCCcCCce
Q 003367 491 KHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPLLYLPKGLERLTCLRTLSEF 570 (826)
Q Consensus 491 ~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~ 570 (826)
.+|++|+|++|. ++.+|..+ +++|++|+|++|. +..+| ..+++|++|++++|.+..+|. +.+ +|+.|++.
T Consensus 59 ~~L~~L~Ls~n~-L~~lp~~l--~~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSSLPDNL--PPQITVLEITQNA-LISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSC-CSCCCSCC--CTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred CCccEEEeCCCC-CCccCHhH--cCCCCEEECcCCC-Ccccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence 389999999998 66799866 3899999999998 45788 568999999999999999988 665 78888776
Q ss_pred eeCc
Q 003367 571 TVSD 574 (826)
Q Consensus 571 ~~~~ 574 (826)
+|..
T Consensus 129 ~N~l 132 (571)
T 3cvr_A 129 NNQL 132 (571)
T ss_dssp SSCC
T ss_pred CCcC
Confidence 6543
No 115
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.43 E-value=2.5e-12 Score=139.78 Aligned_cols=295 Identities=13% Similarity=0.070 Sum_probs=177.1
Q ss_pred CCccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccc----cCCCcEEEEEeCCCCCHHHH
Q 003367 77 VSKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVD----AHFDKRIWVCFSDPVDEIRV 152 (826)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~ 152 (826)
+..++||+++++++..++...-. ....+.+.|+|++|+||||+|+++++..... ..-..++|+++....+...+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 36799999999999998854311 1245679999999999999999999854211 00124678888888888899
Q ss_pred HHHHHHHhcccchh-hhhHHHHHHHHHHHh--cCCceeEEeccCCCCChh--hHHHHHhhhcCC-----CCCcEEEEecc
Q 003367 153 AKAILESFRDVVSA-VAAFDTLLRHIEKSV--KGKKFLLVLDDVWSGNPT--KWEELVSTLKFG-----SPESRILVTTR 222 (826)
Q Consensus 153 ~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~--~~~~l~~~~~~~-----~~~s~iivTtR 222 (826)
+..++..++...+. .....++...+.+.+ .+++.+||||+++.-... ..+.+...+.+. ..+..+|.||+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 99999988653221 122344455555555 456889999999542211 223333323221 44567888887
Q ss_pred cHHH--------HhhccccceEEccCCCCchhHHHHHHhhhc--CCCcccchhhHHHHHHHHHhcC---CCchh-HHHHh
Q 003367 223 KEDV--------AKMMRTTSMILLAKLPDNDCWSLFSQIAFS--GRTTEECQKLTDIGRMIADKCN---GLPLA-AKTSG 288 (826)
Q Consensus 223 ~~~v--------~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~--~~~~~~~~~~~~~~~~i~~~~~---glPLa-l~~~~ 288 (826)
.... ...+. ...+.+.+++.++..+++...+.. ...... .++.+.+++.++ |.|.. +..+.
T Consensus 176 ~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~G~~r~~~~~l~ 250 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLD----PDVVPLCAALAAREHGDARRALDLLR 250 (387)
T ss_dssp CSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC----SSHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC----HHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 6522 11111 247889999999999999887532 111111 234566777777 99943 33222
Q ss_pred hhhc-----C--CcCHHHHHHhhhhhcccccccCcCcchhhhhhccCCcHHHHHHhhhhc-cCCCCceeCHHHHHHHHH-
Q 003367 289 SLLS-----L--KTTMEQWKTVLDSEIWKVEDVEKGLLPPLVISYFDLPSIVRRCFSYCA-IFPKGYEINKDHLIKLWM- 359 (826)
Q Consensus 289 ~~l~-----~--~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a-~fp~~~~i~~~~li~~w~- 359 (826)
.... + .-+.+.+..++.... ...+.-++..|+.+.+..+..++ ++-....+....+.+...
T Consensus 251 ~a~~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~ 320 (387)
T 2v1u_A 251 VAGEIAERRREERVRREHVYSARAEIE----------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKE 320 (387)
T ss_dssp HHHHHHHHTTCSCBCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 2211 1 125566665554321 12345567889998888877776 332222444554443322
Q ss_pred ---HcCCcccCCCchHHHHHHHHHHHHhhccCccccc
Q 003367 360 ---AQGYLKVEGREDMELIGEECFVNLATRSFFQDFE 393 (826)
Q Consensus 360 ---a~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~~ 393 (826)
..| ..+. .......++..|...+++....
T Consensus 321 ~~~~~~-~~~~----~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 321 LTSTLG-LEHV----TLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHHTT-CCCC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHhcC-CCCC----CHHHHHHHHHHHHhCCCeEEEe
Confidence 223 1111 2345567899999999998753
No 116
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.42 E-value=4.8e-12 Score=137.56 Aligned_cols=298 Identities=14% Similarity=0.073 Sum_probs=182.8
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccC-CCcEEEEEeCCCCCHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAH-FDKRIWVCFSDPVDEIRVAKAI 156 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i 156 (826)
+.++||+++++++..++...........+.+.|+|++|+||||+|+++++... .. -..++|+++....+...+...+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYK--DKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHT--TSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHh--hhcCeeEEEEeCccCCCHHHHHHHH
Confidence 67999999999999988652110112334899999999999999999998543 22 1346778878878888899999
Q ss_pred HHHhcccchh-hhhHHHHHHHHHHHh--cCCceeEEeccCCCCChhhHHHHHhhhcCCC----CCcEEEEecccHHHHhh
Q 003367 157 LESFRDVVSA-VAAFDTLLRHIEKSV--KGKKFLLVLDDVWSGNPTKWEELVSTLKFGS----PESRILVTTRKEDVAKM 229 (826)
Q Consensus 157 ~~~l~~~~~~-~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~----~~s~iivTtR~~~v~~~ 229 (826)
+..++..... .....++.+.+.+.+ .+++.+||||+++.-+......+...+.... .+..||++|+.......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 9888653221 122344444455444 3668899999997665556666665554322 46678888876543332
Q ss_pred cc-------ccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhc---------CCCchhHHHHhhhhc-
Q 003367 230 MR-------TTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKC---------NGLPLAAKTSGSLLS- 292 (826)
Q Consensus 230 ~~-------~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~---------~glPLal~~~~~~l~- 292 (826)
+. ....+.+.+++.++..+++...+....... .-..+..+.|++.+ +|.|..+..+.....
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEG--SYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTT--SSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 21 123699999999999999988753211000 11145677788888 788754443332211
Q ss_pred -----CC--cCHHHHHHhhhhhcccccccCcCcchhhhhhccCCcHHHHHHhhhhccCC---CCceeCHHHHHHHHHH--
Q 003367 293 -----LK--TTMEQWKTVLDSEIWKVEDVEKGLLPPLVISYFDLPSIVRRCFSYCAIFP---KGYEINKDHLIKLWMA-- 360 (826)
Q Consensus 293 -----~~--~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~fp---~~~~i~~~~li~~w~a-- 360 (826)
.. -+.+....+.... ....+.-.+..|+.+.+.++..++.+. .+..+....+...+..
T Consensus 253 ~a~~~~~~~i~~~~v~~~~~~~----------~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 322 (389)
T 1fnn_A 253 AAQQNGRKHIAPEDVRKSSKEV----------LFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVC 322 (389)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHH----------SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHH
T ss_pred HHHHhCCCCcCHHHHHHHHHHH----------hhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHH
Confidence 11 1233333222211 112233445678888888887777654 2224566666554433
Q ss_pred --cCCcccCCCchHHHHHHHHHHHHhhccCcccccC
Q 003367 361 --QGYLKVEGREDMELIGEECFVNLATRSFFQDFER 394 (826)
Q Consensus 361 --~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~~~ 394 (826)
.|.. + .+ ......++.+|...+++.....
T Consensus 323 ~~~~~~-~---~~-~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 323 EEYGER-P---RV-HSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp HHTTCC-C---CC-HHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHcCCC-C---CC-HHHHHHHHHHHHhCCCeEEeee
Confidence 2211 1 11 2335678999999999987543
No 117
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.42 E-value=1.3e-12 Score=128.24 Aligned_cols=147 Identities=19% Similarity=0.173 Sum_probs=104.5
Q ss_pred cEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCcccccCCcc-CCCCCCCCcCCceee
Q 003367 494 RYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPLLYLPKG-LERLTCLRTLSEFTV 572 (826)
Q Consensus 494 ~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~ 572 (826)
+.++.+++. +..+|..+ ..+|++|++++|.+....+..+..+++|++|++++|.+..+|.. +..+++|++|++.++
T Consensus 10 ~~v~c~~~~-l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQG-RTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCC-ccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 567888887 77888655 46899999999986554555678999999999999988877765 567777777766544
Q ss_pred CcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCCcCCceeeEeecCCCcccccchHHHhhcCCCCC
Q 003367 573 SDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSP 652 (826)
Q Consensus 573 ~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~ 652 (826)
.... + ....+..++
T Consensus 87 ~l~~----------------~--------------------------------------------------~~~~~~~l~ 100 (208)
T 2o6s_A 87 QLQS----------------L--------------------------------------------------PNGVFDKLT 100 (208)
T ss_dssp CCCC----------------C--------------------------------------------------CTTTTTTCT
T ss_pred cCCc----------------c--------------------------------------------------CHhHhcCcc
Confidence 3200 0 001234456
Q ss_pred CcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC-CCCCCCccceeecccc
Q 003367 653 DLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP-SLGRLPSLESLVVEAL 709 (826)
Q Consensus 653 ~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~ 709 (826)
+|++|++++|.+..+++..+..+++|++|+|++|.+.+..+ .+..+++|+.|+++++
T Consensus 101 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 101 QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 78888888888887756667778888888888887765544 4677777777777743
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.42 E-value=4.9e-13 Score=133.27 Aligned_cols=90 Identities=27% Similarity=0.280 Sum_probs=56.9
Q ss_pred ccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccc-hhhhcccCCCeeeecCcccccCCcc
Q 003367 479 SIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALP-QGIAKLINLRHLINEGTPLLYLPKG 557 (826)
Q Consensus 479 ~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~l~~lp~~ 557 (826)
.+..+|..+. ++|++|+|++|.+.+..|..+.++++|++|+|++|.+ ..+| ..+..+++|++|++++|.+..+|..
T Consensus 30 ~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 106 (229)
T 3e6j_A 30 RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSA 106 (229)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCCcCCccChh
Confidence 4556665543 6777777777774444466677777777777777774 3443 4456777777777777777666544
Q ss_pred -CCCCCCCCcCCcee
Q 003367 558 -LERLTCLRTLSEFT 571 (826)
Q Consensus 558 -i~~L~~L~~L~~~~ 571 (826)
+..+++|++|++.+
T Consensus 107 ~~~~l~~L~~L~Ls~ 121 (229)
T 3e6j_A 107 VFDRLVHLKELFMCC 121 (229)
T ss_dssp TTTTCTTCCEEECCS
T ss_pred HhCcchhhCeEeccC
Confidence 45555555555443
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.42 E-value=9.2e-16 Score=173.61 Aligned_cols=61 Identities=18% Similarity=0.044 Sum_probs=32.9
Q ss_pred cCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCC-------------CCcccchhhhcccCCCeee-ecCc
Q 003367 488 KKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCG-------------NLHALPQGIAKLINLRHLI-NEGT 549 (826)
Q Consensus 488 ~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~-------------~~~~lp~~i~~L~~L~~L~-l~~~ 549 (826)
..+++|+.|+|++|. ++.+|+.|+++++|+.|++++|. ..+..|..++.+++|+.|+ ++.|
T Consensus 346 ~~~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n 420 (567)
T 1dce_A 346 ATDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 420 (567)
T ss_dssp STTTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH
T ss_pred ccCccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc
Confidence 344555555555555 45555555555555555554442 3445556666666666666 4443
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.41 E-value=3.8e-13 Score=133.06 Aligned_cols=98 Identities=17% Similarity=0.179 Sum_probs=58.1
Q ss_pred cEEeccccccccccccccccccccCCCCccEEEccCCCCcccc-c-hhhcCCCCCcEEeccCCCCCcccchhhhcccCCC
Q 003367 465 RTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYEL-P-EALCDLCNLQTLDVSNCGNLHALPQGIAKLINLR 542 (826)
Q Consensus 465 r~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~l-p-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~ 542 (826)
++++++ ++ .+..+|..+. ..+++|+|++|. +..+ | ..|.++++|++|+|++|.+.+..|..|..+++|+
T Consensus 14 ~~l~~s-----~n-~l~~iP~~~~--~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~ 84 (220)
T 2v70_A 14 TTVDCS-----NQ-KLNKIPEHIP--QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVN 84 (220)
T ss_dssp TEEECC-----SS-CCSSCCSCCC--TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CEeEeC-----CC-CcccCccCCC--CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCC
Confidence 356666 33 4555665543 345677777776 4444 3 2366777777777777765444445677777777
Q ss_pred eeeecCcccccCCcc-CCCCCCCCcCCcee
Q 003367 543 HLINEGTPLLYLPKG-LERLTCLRTLSEFT 571 (826)
Q Consensus 543 ~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~ 571 (826)
+|++++|.+..+|.. +..+++|++|++.+
T Consensus 85 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 114 (220)
T 2v70_A 85 EILLTSNRLENVQHKMFKGLESLKTLMLRS 114 (220)
T ss_dssp EEECCSSCCCCCCGGGGTTCSSCCEEECTT
T ss_pred EEECCCCccCccCHhHhcCCcCCCEEECCC
Confidence 777777766655543 55555555554433
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.40 E-value=1.6e-15 Score=171.71 Aligned_cols=204 Identities=18% Similarity=0.161 Sum_probs=134.0
Q ss_pred hcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCccc--------------ccCCccCCCCCCCCcCCceeeCccc
Q 003367 511 LCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPL--------------LYLPKGLERLTCLRTLSEFTVSDIE 576 (826)
Q Consensus 511 i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l--------------~~lp~~i~~L~~L~~L~~~~~~~~~ 576 (826)
+..+++|+.|+|++|. ++.+|..+++|++|+.|++++|.. ...|..++.+++|+.|+....+.
T Consensus 345 ~~~~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-- 421 (567)
T 1dce_A 345 SATDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-- 421 (567)
T ss_dssp CSTTTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH--
T ss_pred cccCccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc--
Confidence 3678999999999998 678999999999999999977641 12233344444444443111000
Q ss_pred CcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCe
Q 003367 577 NVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEK 656 (826)
Q Consensus 577 ~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~ 656 (826)
+ .+|..+.+..+. +..+ +...|+.
T Consensus 422 -------~-----------------------------------~~L~~l~l~~n~-------------i~~l-~~~~L~~ 445 (567)
T 1dce_A 422 -------L-----------------------------------DDLRSKFLLENS-------------VLKM-EYADVRV 445 (567)
T ss_dssp -------H-----------------------------------HHHHHHHHHHHH-------------HHHH-HHTTCSE
T ss_pred -------c-----------------------------------chhhhhhhhccc-------------cccc-CccCceE
Confidence 0 011111111111 1111 1135888
Q ss_pred EEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC-CCCCCCccceeeccccccceEeCcccccCCCCccccCccCcC
Q 003367 657 LTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP-SLGRLPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVV 735 (826)
Q Consensus 657 L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 735 (826)
|+|++|.++++ |. ++.+++|+.|+|++|.+. .+| .++.+++|+.|+|+++. +..++ .+..
T Consensus 446 L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~-l~~lp---------------~l~~ 506 (567)
T 1dce_A 446 LHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA-LENVD---------------GVAN 506 (567)
T ss_dssp EECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC-CCCCG---------------GGTT
T ss_pred EEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCC-CCCCc---------------ccCC
Confidence 99999988887 66 888999999999999887 556 78889999999998543 22111 1346
Q ss_pred CCccceeeccccccccccccccccccCcCCCCccceeeecCCCCCCCCCCCCc----ccCCcceEEE
Q 003367 736 FPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKLKALPDHLL----LTTKMNELTM 798 (826)
Q Consensus 736 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~----~l~~L~~L~l 798 (826)
+++|+.|+|++| .+..+.. +..+..+++|+.|+|++|+ ++.+|..+. .+++|+.|++
T Consensus 507 l~~L~~L~Ls~N-~l~~~~~----p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 507 LPRLQELLLCNN-RLQQSAA----IQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSCCEEECCSS-CCCSSST----TGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCcEEECCCC-CCCCCCC----cHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 888999999988 4554421 3456789999999999965 666665433 2678888753
No 122
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.39 E-value=9.4e-13 Score=130.23 Aligned_cols=148 Identities=14% Similarity=0.165 Sum_probs=116.3
Q ss_pred cEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCcccccC-CccCCCCCCCCcCCceee
Q 003367 494 RYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPLLYL-PKGLERLTCLRTLSEFTV 572 (826)
Q Consensus 494 ~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~~~~~ 572 (826)
+.++++++. +..+|..+. .+|+.|++++|.+....+..|..+++|++|++++|.+..+ |..+.++++|++|++.++
T Consensus 14 ~~v~c~~~~-l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKG-LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSC-CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCC-cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 678999988 888998665 7899999999996655556899999999999999999876 667888888888877665
Q ss_pred CcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCCcCCceeeEeecCCCcccccchHHHhhcCCCCC
Q 003367 573 SDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSP 652 (826)
Q Consensus 573 ~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~ 652 (826)
.... +. ...+..++
T Consensus 91 ~l~~----------------l~--------------------------------------------------~~~f~~l~ 104 (220)
T 2v9t_B 91 KITE----------------LP--------------------------------------------------KSLFEGLF 104 (220)
T ss_dssp CCCC----------------CC--------------------------------------------------TTTTTTCT
T ss_pred cCCc----------------cC--------------------------------------------------HhHccCCC
Confidence 4310 00 01234567
Q ss_pred CcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC-CCCCCCccceeeccccc
Q 003367 653 DLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP-SLGRLPSLESLVVEALS 710 (826)
Q Consensus 653 ~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 710 (826)
+|++|+|++|.+..+.|..+..+++|++|+|++|.+.+..+ .+..+++|+.|+|++++
T Consensus 105 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 105 SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 88888888888888878888888999999999988877665 57888888888888543
No 123
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.39 E-value=3.7e-13 Score=144.38 Aligned_cols=101 Identities=22% Similarity=0.183 Sum_probs=70.8
Q ss_pred cEEeccccccccccccccccccccCCCCccEEEccCCCCccccc-hhhc-CCCCCcEEeccCCCCCcccchhhhcccCCC
Q 003367 465 RTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELP-EALC-DLCNLQTLDVSNCGNLHALPQGIAKLINLR 542 (826)
Q Consensus 465 r~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp-~~i~-~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~ 542 (826)
++++++ ++ .+..+|..+. ..+++|+|++|. +..+| ..+. ++++|++|+|++|.+....|..|..+++|+
T Consensus 21 ~~l~c~-----~~-~l~~iP~~~~--~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~ 91 (361)
T 2xot_A 21 NILSCS-----KQ-QLPNVPQSLP--SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR 91 (361)
T ss_dssp TEEECC-----SS-CCSSCCSSCC--TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CEEEeC-----CC-CcCccCccCC--CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCC
Confidence 467776 44 5666776554 457888888887 55554 3455 788888888888875555556688888888
Q ss_pred eeeecCcccccCCcc-CCCCCCCCcCCceeeCc
Q 003367 543 HLINEGTPLLYLPKG-LERLTCLRTLSEFTVSD 574 (826)
Q Consensus 543 ~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~ 574 (826)
+|++++|.+..+|.. +..+++|+.|++.++..
T Consensus 92 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i 124 (361)
T 2xot_A 92 YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHI 124 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEECCCCcCCcCCHHHhCCCcCCCEEECCCCcc
Confidence 888888888877654 67777777777665543
No 124
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.39 E-value=1.2e-12 Score=129.58 Aligned_cols=148 Identities=16% Similarity=0.142 Sum_probs=114.3
Q ss_pred cEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccc-hhhhcccCCCeeeecCcccccCCc-cCCCCCCCCcCCcee
Q 003367 494 RYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALP-QGIAKLINLRHLINEGTPLLYLPK-GLERLTCLRTLSEFT 571 (826)
Q Consensus 494 ~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~~ 571 (826)
+.+++++|. ++.+|..+. ..+++|++++|.+.+..| ..|..+++|++|++++|.+..++. .+.++++|++|++.+
T Consensus 14 ~~l~~s~n~-l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQK-LNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCC-cccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 589999998 888998664 467999999999655434 458899999999999999998776 588888888887766
Q ss_pred eCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCCcCCceeeEeecCCCcccccchHHHhhcCCCC
Q 003367 572 VSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPS 651 (826)
Q Consensus 572 ~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~ 651 (826)
+..... ....+..+
T Consensus 91 N~l~~~------------------------------------------------------------------~~~~~~~l 104 (220)
T 2v70_A 91 NRLENV------------------------------------------------------------------QHKMFKGL 104 (220)
T ss_dssp SCCCCC------------------------------------------------------------------CGGGGTTC
T ss_pred CccCcc------------------------------------------------------------------CHhHhcCC
Confidence 543100 01224456
Q ss_pred CCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC-CCCCCCccceeeccccc
Q 003367 652 PDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP-SLGRLPSLESLVVEALS 710 (826)
Q Consensus 652 ~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 710 (826)
++|++|+|++|.+.+++|..+..+++|++|+|++|.+.+..| .+..+++|+.|+|++++
T Consensus 105 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 105 ESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp SSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred cCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 788888888888888878888888888888888888877766 77888888888887543
No 125
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.38 E-value=1.8e-12 Score=129.16 Aligned_cols=147 Identities=22% Similarity=0.170 Sum_probs=116.1
Q ss_pred ccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCcccccCCcc-CCCCCCCCcCCcee
Q 003367 493 LRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPLLYLPKG-LERLTCLRTLSEFT 571 (826)
Q Consensus 493 L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~ 571 (826)
.+.++.+++. ++.+|..+. ++|++|+|++|.+.+..|..+..+++|++|++++|.+..+|.. +..+++|+.|++.+
T Consensus 21 ~~~v~c~~~~-l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKR-HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCC-cCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 4678999888 889998664 8999999999997777788899999999999999999988865 68888888887766
Q ss_pred eCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCCcCCceeeEeecCCCcccccchHHHhhcCCCC
Q 003367 572 VSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPS 651 (826)
Q Consensus 572 ~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~ 651 (826)
+..... ....+..+
T Consensus 98 N~l~~l------------------------------------------------------------------~~~~~~~l 111 (229)
T 3e6j_A 98 NQLTVL------------------------------------------------------------------PSAVFDRL 111 (229)
T ss_dssp SCCCCC------------------------------------------------------------------CTTTTTTC
T ss_pred CcCCcc------------------------------------------------------------------ChhHhCcc
Confidence 543100 01123456
Q ss_pred CCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC-CCCCCCccceeecccc
Q 003367 652 PDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP-SLGRLPSLESLVVEAL 709 (826)
Q Consensus 652 ~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~ 709 (826)
++|++|+|++|.+..+ |..+..+++|++|+|++|.+.+..+ .+..+++|+.|+++++
T Consensus 112 ~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 112 VHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp TTCCEEECCSSCCCSC-CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred hhhCeEeccCCccccc-CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 7888888888888876 7788888888888888888876554 5778888888888744
No 126
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.37 E-value=1e-12 Score=133.83 Aligned_cols=152 Identities=22% Similarity=0.185 Sum_probs=118.4
Q ss_pred hhccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhh
Q 003367 457 LFDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIA 536 (826)
Q Consensus 457 ~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~ 536 (826)
.+..+++|++|+++ +| .+..+| .+..+++|++|+|++|. +..+|. +.++++|++|++++|. +..+|.. .
T Consensus 36 ~~~~l~~L~~L~l~-----~n-~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~-~ 104 (263)
T 1xeu_A 36 SQKELSGVQNFNGD-----NS-NIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNRNR-LKNLNGI-P 104 (263)
T ss_dssp CHHHHTTCSEEECT-----TS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCSSC-CSCCTTC-C
T ss_pred chhhcCcCcEEECc-----CC-Ccccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCCCc-cCCcCcc-c
Confidence 46788999999999 55 566677 78999999999999998 777877 9999999999999998 5556643 3
Q ss_pred cccCCCeeeecCcccccCCccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhc
Q 003367 537 KLINLRHLINEGTPLLYLPKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKL 616 (826)
Q Consensus 537 ~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l 616 (826)
. ++|++|++++|.+..+| .+.++++|+.|++.++.... +
T Consensus 105 ~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~----------~----------------------------- 143 (263)
T 1xeu_A 105 S-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKS----------I----------------------------- 143 (263)
T ss_dssp C-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCB----------C-----------------------------
T ss_pred c-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCC----------C-----------------------------
Confidence 3 99999999999999876 58888888888776553300 0
Q ss_pred cCCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCC
Q 003367 617 ESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQ 691 (826)
Q Consensus 617 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~ 691 (826)
..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+...
T Consensus 144 -----------------------------~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 144 -----------------------------VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -----------------------------GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred -----------------------------hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 0122356778888888887775 5677888888888888876544
No 127
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.36 E-value=1e-11 Score=125.54 Aligned_cols=197 Identities=15% Similarity=0.138 Sum_probs=122.3
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
..++||+++++.+..++.... ..+.+.|+|++|+||||+|+++++.......+.. ..+.. ... ...+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~---~~~~~---~~~-~~~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGV---CDN-CREIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS---SCCSC---SHH-HHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC---CCCcc---cHH-HHHHh
Confidence 469999999999999986532 2358999999999999999999985432211100 00000 000 00110
Q ss_pred HHh-----cccchhhhhHHHHHHHHHHH----hcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccHHHH-
Q 003367 158 ESF-----RDVVSAVAAFDTLLRHIEKS----VKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKEDVA- 227 (826)
Q Consensus 158 ~~l-----~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~~v~- 227 (826)
... ..........+.+...+... ..+++.+||+||++.-+...++.+...+.....+..+|+||+.....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred ccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 000 00000011112222222211 13567999999997666677788888777666778889888764321
Q ss_pred hh-ccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHHhhh
Q 003367 228 KM-MRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTSGSL 290 (826)
Q Consensus 228 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~ 290 (826)
.. ......+++.+++.++..+++...+........ .+..+.|++.|+|.|..+..+...
T Consensus 171 ~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 171 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC----HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 11 122457999999999999999887754332222 456778999999999988876543
No 128
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.35 E-value=7.7e-12 Score=135.63 Aligned_cols=294 Identities=12% Similarity=0.033 Sum_probs=175.8
Q ss_pred CCccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccc----cC--CCcEEEEEeCCCC-CH
Q 003367 77 VSKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVD----AH--FDKRIWVCFSDPV-DE 149 (826)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~--f~~~~wv~~~~~~-~~ 149 (826)
+..++||+++++++.+++..... ....+.|.|+|++|+||||+|+++++..... .. ...++|+++.... +.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 96 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTP 96 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCH
Confidence 37799999999999988754211 1245689999999999999999999853211 01 2346788877666 78
Q ss_pred HHHHHHHHHHhcccch--hhhhHHHHHHHHHHHhcCCceeEEeccCCCCChhh-HHH-HHhhhcCCCCCcEEEEecccHH
Q 003367 150 IRVAKAILESFRDVVS--AVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTK-WEE-LVSTLKFGSPESRILVTTRKED 225 (826)
Q Consensus 150 ~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~-~~~-l~~~~~~~~~~s~iivTtR~~~ 225 (826)
..++..++..+.+... .......+...+.+.+..++.+|||||++.-.... .+. +...+... .+..+|+||+...
T Consensus 97 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~ 175 (384)
T 2qby_B 97 QAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDIN 175 (384)
T ss_dssp HHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTT
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCc
Confidence 8888888888732211 11223455666777777666699999994321111 222 22222223 6788999998753
Q ss_pred HHh----hc--cccceEEccCCCCchhHHHHHHhhhcCC-CcccchhhHHHHHHHHHhcC---CCch-hHHHHhhh--hc
Q 003367 226 VAK----MM--RTTSMILLAKLPDNDCWSLFSQIAFSGR-TTEECQKLTDIGRMIADKCN---GLPL-AAKTSGSL--LS 292 (826)
Q Consensus 226 v~~----~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~-~~~~~~~~~~~~~~i~~~~~---glPL-al~~~~~~--l~ 292 (826)
... .+ .....+.+.+++.++..+++..++.... ....+ .+..+.|++.++ |.|. |+..+-.. +.
T Consensus 176 ~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 176 VRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp TTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred hHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 211 11 1123899999999999999998753211 11111 345566777777 8887 33332222 21
Q ss_pred -C--CcCHHHHHHhhhhhcccccccCcCcchhhhhhccCCcHHHHHHhhhhccCCCC-ceeCHHHHHHHHHHcCCcccCC
Q 003367 293 -L--KTTMEQWKTVLDSEIWKVEDVEKGLLPPLVISYFDLPSIVRRCFSYCAIFPKG-YEINKDHLIKLWMAQGYLKVEG 368 (826)
Q Consensus 293 -~--~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~fp~~-~~i~~~~li~~w~a~g~i~~~~ 368 (826)
. .-+.+.+..++.... ...+.-++..|+++.+..+..++. ... ..+. +.....-...| ..+
T Consensus 253 ~~~~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~al~~-~~~~~~~~-~~~~~~~~~~g-~~~-- 317 (384)
T 2qby_B 253 SGGGIIRKEHVDKAIVDYE----------QERLIEAVKALPFHYKLALRSLIE-SEDVMSAH-KMYTDLCNKFK-QKP-- 317 (384)
T ss_dssp TSSSCCCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHT-CCBHHHHH-HHHHHHHHHTT-CCC--
T ss_pred cCCCccCHHHHHHHHHHHh----------cchHHHHHHcCCHHHHHHHHHHHH-hcccChHH-HHHHHHHHHcC-CCC--
Confidence 1 225666666655321 133556778899888888777776 211 1111 11111111222 111
Q ss_pred CchHHHHHHHHHHHHhhccCccccc
Q 003367 369 REDMELIGEECFVNLATRSFFQDFE 393 (826)
Q Consensus 369 ~~~~~~~~~~~~~~L~~~sll~~~~ 393 (826)
. .......++..|...+++....
T Consensus 318 -~-~~~~~~~~l~~L~~~gli~~~~ 340 (384)
T 2qby_B 318 -L-SYRRFSDIISELDMFGIVKIRI 340 (384)
T ss_dssp -C-CHHHHHHHHHHHHHTTSEEEEE
T ss_pred -C-CHHHHHHHHHHHHhCCCEEEEe
Confidence 1 2234567889999999998654
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.30 E-value=2.9e-13 Score=158.20 Aligned_cols=114 Identities=24% Similarity=0.193 Sum_probs=89.1
Q ss_pred hchhhhccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccc
Q 003367 453 ALPSLFDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALP 532 (826)
Q Consensus 453 ~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp 532 (826)
..+..|..++.|++|+|+ +| .+..+|..+..+++|++|+|++|. +..+|..|++|++|++|+|++|.+. .+|
T Consensus 215 ~~~~~~~~l~~L~~L~Ls-----~n-~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp 286 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLS-----NL-QIFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLT-SLP 286 (727)
T ss_dssp -------CCCCCCEEECT-----TS-CCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCS-SCC
T ss_pred cChhhhccCCCCcEEECC-----CC-CCCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCC-ccC
Confidence 346778888889999988 55 556778788888889999999888 5688888888899999999988844 788
Q ss_pred hhhhcccCCCeeeecCcccccCCccCCCCCCCCcCCceeeCc
Q 003367 533 QGIAKLINLRHLINEGTPLLYLPKGLERLTCLRTLSEFTVSD 574 (826)
Q Consensus 533 ~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~ 574 (826)
..|++|++|++|+|++|.+..+|..|++|++|++|++.+|..
T Consensus 287 ~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp SSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred hhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCcc
Confidence 888888899999999888888888888888888887766544
No 130
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.28 E-value=2e-11 Score=132.53 Aligned_cols=295 Identities=14% Similarity=0.105 Sum_probs=171.9
Q ss_pred CCccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccC---CCcEEEEEeCCCCCHHHHH
Q 003367 77 VSKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAH---FDKRIWVCFSDPVDEIRVA 153 (826)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~---f~~~~wv~~~~~~~~~~~~ 153 (826)
+..|+||+++++.+.+++..... ....+.+.|+|++|+||||||+++++... .. -..++|+.+....+...++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSKLH--KKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHHHH--HHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHHHH--HHhcCCceEEEEECCCCCCHHHHH
Confidence 46799999999999998864211 12456899999999999999999998432 22 2246777776666777788
Q ss_pred HHHHHHhcccchh-hhhHHHHHHHHHHHhc--CCceeEEeccCCCC----ChhhHHHHHhhhcC-CCCCcEEEEecccHH
Q 003367 154 KAILESFRDVVSA-VAAFDTLLRHIEKSVK--GKKFLLVLDDVWSG----NPTKWEELVSTLKF-GSPESRILVTTRKED 225 (826)
Q Consensus 154 ~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~----~~~~~~~l~~~~~~-~~~~s~iivTtR~~~ 225 (826)
..++..++..... .....+..+.+.+.+. +++.+||||+++.- +...+..+...+.. ...+..+|+||+...
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 8887777543211 1123444445555443 45899999999541 12334444444422 234556788887654
Q ss_pred HHhhcc-------ccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcC---CCchhHHHHh-hhhc--
Q 003367 226 VAKMMR-------TTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCN---GLPLAAKTSG-SLLS-- 292 (826)
Q Consensus 226 v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~---glPLal~~~~-~~l~-- 292 (826)
....+. ....+.+++++.++..+++...+...... ..-..++.+.+++.++ |.|..+..+. ....
T Consensus 175 ~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 175 FVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKP--GVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIA 252 (386)
T ss_dssp GGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCS--SCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccC--CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 322211 12479999999999999998865311100 0112455666777777 9998443322 2211
Q ss_pred ---C--CcCHHHHHHhhhhhcccccccCcCcchhhhhhccCCcHHHHHHhhhhccCCC-C-ceeCHHHHHHHHH----Hc
Q 003367 293 ---L--KTTMEQWKTVLDSEIWKVEDVEKGLLPPLVISYFDLPSIVRRCFSYCAIFPK-G-YEINKDHLIKLWM----AQ 361 (826)
Q Consensus 293 ---~--~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~fp~-~-~~i~~~~li~~w~----a~ 361 (826)
. .-+.+.+..++.... ...+.-.+..++...+..+..++.+.+ + ..+....+.+... ..
T Consensus 253 ~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~ 322 (386)
T 2qby_A 253 ERMKDTKVKEEYVYMAKEEIE----------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKL 322 (386)
T ss_dssp HHTTCSSCCHHHHHHHHHHHH----------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHH
T ss_pred HhcCCCccCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhc
Confidence 1 114455554443321 123555677888888888877775322 1 1233433322221 11
Q ss_pred CCcccCCCchHHHHHHHHHHHHhhccCcccc
Q 003367 362 GYLKVEGREDMELIGEECFVNLATRSFFQDF 392 (826)
Q Consensus 362 g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~ 392 (826)
| +.+. .......+++.|...+++...
T Consensus 323 g-~~~~----~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 323 G-VEAV----TQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp T-CCCC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred C-CCCC----CHHHHHHHHHHHHhCCCEEEE
Confidence 2 1111 123345678899999999764
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.28 E-value=4.8e-12 Score=119.43 Aligned_cols=106 Identities=26% Similarity=0.386 Sum_probs=78.4
Q ss_pred ccCCCCcEEeccccccccccccc--cccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhh
Q 003367 459 DRLTCLRTLCLRCHERHFCLSIA--RLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIA 536 (826)
Q Consensus 459 ~~l~~Lr~L~L~~~~~~~~~~~~--~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~ 536 (826)
...++|++|+++ +| .+. .+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|.+.+.+|..+.
T Consensus 21 ~~~~~L~~L~l~-----~n-~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 92 (168)
T 2ell_A 21 RTPAAVRELVLD-----NC-KSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAE 92 (168)
T ss_dssp SCTTSCSEEECC-----SC-BCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHH
T ss_pred CCcccCCEEECC-----CC-CCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHh
Confidence 344788888888 44 444 677778888888889988888 5555 5688888888888888886666787777
Q ss_pred cccCCCeeeecCcccccCC--ccCCCCCCCCcCCceee
Q 003367 537 KLINLRHLINEGTPLLYLP--KGLERLTCLRTLSEFTV 572 (826)
Q Consensus 537 ~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~~~~~ 572 (826)
.+++|++|++++|.+..+| ..+..+++|++|++.++
T Consensus 93 ~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 93 KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC
Confidence 8888888888888877665 44555555555544433
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=2.1e-12 Score=150.89 Aligned_cols=93 Identities=23% Similarity=0.169 Sum_probs=69.1
Q ss_pred cccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCcccccCCccCC
Q 003367 480 IARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPLLYLPKGLE 559 (826)
Q Consensus 480 ~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~ 559 (826)
+...|..+..+..|++|+|++|. +..+|..+.++++|++|+|++|.+. .+|..|++|++|++|+|++|.+..+|..++
T Consensus 213 ~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 290 (727)
T 4b8c_D 213 MVMPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELG 290 (727)
T ss_dssp ---------CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGG
T ss_pred eecChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhc
Confidence 33456777888888888888888 6678877778888888888888744 788888888888888888888888888888
Q ss_pred CCCCCCcCCceeeCc
Q 003367 560 RLTCLRTLSEFTVSD 574 (826)
Q Consensus 560 ~L~~L~~L~~~~~~~ 574 (826)
+|++|++|++.+|..
T Consensus 291 ~l~~L~~L~L~~N~l 305 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMV 305 (727)
T ss_dssp GGTTCSEEECCSSCC
T ss_pred CCCCCCEEECCCCCC
Confidence 888888888877755
No 133
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.27 E-value=4.2e-12 Score=136.09 Aligned_cols=158 Identities=21% Similarity=0.148 Sum_probs=115.1
Q ss_pred CCCcEEeccccccccccccccccc-ccc-CCCCccEEEccCCCCccccc-hhhcCCCCCcEEeccCCCCCcccchhhhcc
Q 003367 462 TCLRTLCLRCHERHFCLSIARLPR-NIK-KLKHLRYLNLSNNDAIYELP-EALCDLCNLQTLDVSNCGNLHALPQGIAKL 538 (826)
Q Consensus 462 ~~Lr~L~L~~~~~~~~~~~~~lp~-~i~-~l~~L~~L~Ls~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L 538 (826)
..+++|+|+ ++ .+..++. .+. .+++|++|+|++|. +..+| ..|.++++|++|+|++|.+....+..|..+
T Consensus 39 ~~l~~L~Ls-----~N-~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 111 (361)
T 2xot_A 39 SYTALLDLS-----HN-NLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDL 111 (361)
T ss_dssp TTCSEEECC-----SS-CCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CCCCEEECC-----CC-CCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCC
Confidence 458999999 44 5555544 455 89999999999999 55554 679999999999999999655555678999
Q ss_pred cCCCeeeecCcccccC-CccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhcc
Q 003367 539 INLRHLINEGTPLLYL-PKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLE 617 (826)
Q Consensus 539 ~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~ 617 (826)
++|++|++++|.+..+ |..+.++++|+.|++.++.... +.
T Consensus 112 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~----------------l~----------------------- 152 (361)
T 2xot_A 112 QALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR----------------FP----------------------- 152 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS----------------CC-----------------------
T ss_pred cCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe----------------eC-----------------------
Confidence 9999999999999977 4568889999998876654310 00
Q ss_pred CCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccC--CcEEEEecCCCC
Q 003367 618 SKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTE--LRMLNLQRCGKC 689 (826)
Q Consensus 618 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~--L~~L~L~~~~~~ 689 (826)
...+..+..+++|+.|+|++|.+..+++..+..+++ |+.|+|++|.+.
T Consensus 153 ------------------------~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 153 ------------------------VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ------------------------GGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ------------------------HHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 000111134567888888888888775566666666 477888887654
No 134
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.27 E-value=6.2e-12 Score=118.68 Aligned_cols=133 Identities=23% Similarity=0.217 Sum_probs=109.6
Q ss_pred CCCCcceEEEEEecCCCCccccCCcccchhhhchhhhccCCCCcEEeccccccccccccccccccccCCCCccEEEccCC
Q 003367 422 CNETKLRSLSIVHKSNSSTIFPGIRDSVADIALPSLFDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNN 501 (826)
Q Consensus 422 ~~~~~lr~l~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~ 501 (826)
..+..++.|+++++.... ..+|..+..+++|++|+++ +| .+..+ ..+..+++|++|+|++|
T Consensus 21 ~~~~~L~~L~l~~n~l~~------------~~i~~~~~~l~~L~~L~l~-----~n-~l~~~-~~~~~l~~L~~L~Ls~N 81 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSND------------GKIEGLTAEFVNLEFLSLI-----NV-GLISV-SNLPKLPKLKKLELSEN 81 (168)
T ss_dssp SCTTSCSEEECCSCBCBT------------TBCSSCCGGGGGCCEEEEE-----SS-CCCCC-SSCCCCSSCCEEEEESC
T ss_pred CCcccCCEEECCCCCCCh------------hhHHHHHHhCCCCCEEeCc-----CC-CCCCh-hhhccCCCCCEEECcCC
Confidence 446889999998873321 1235667889999999999 44 45555 67899999999999999
Q ss_pred CCccccchhhcCCCCCcEEeccCCCCCcccc--hhhhcccCCCeeeecCcccccCCc----cCCCCCCCCcCCceeeCc
Q 003367 502 DAIYELPEALCDLCNLQTLDVSNCGNLHALP--QGIAKLINLRHLINEGTPLLYLPK----GLERLTCLRTLSEFTVSD 574 (826)
Q Consensus 502 ~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L~~~~~~~ 574 (826)
.+...+|..+.++++|++|++++|. +..+| ..+..+++|++|++++|.+..+|. .+..+++|+.|++..+..
T Consensus 82 ~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 82 RIFGGLDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CCCSCCCHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred cCchHHHHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 9555588888889999999999998 45554 789999999999999999999887 789999999999988765
No 135
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.27 E-value=7.3e-11 Score=117.19 Aligned_cols=186 Identities=16% Similarity=0.074 Sum_probs=118.8
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
..++||++.++++.+++.... .+.+.|+|++|+|||++|+++++.......-...+.+..+.......+...+.
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIK 90 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHH
Confidence 468999999999999996542 23489999999999999999998432111112234444444333222221111
Q ss_pred HHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccHHHH-hh-ccccce
Q 003367 158 ESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKEDVA-KM-MRTTSM 235 (826)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~~v~-~~-~~~~~~ 235 (826)
...... ....+++.+||+||++.-.....+.+...+.....+.++|+||+..... .. ......
T Consensus 91 ~~~~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~ 155 (226)
T 2chg_A 91 EFARTA---------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAV 155 (226)
T ss_dssp HHHTSC---------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred HHhccc---------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCce
Confidence 110000 0013578899999997666666677777776666778899888765311 11 112347
Q ss_pred EEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHHh
Q 003367 236 ILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTSG 288 (826)
Q Consensus 236 ~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~ 288 (826)
+.+.+++.++..+++...+........ .+..+.+++.++|.|..+..+.
T Consensus 156 i~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 156 FRFKPVPKEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHHH
T ss_pred eecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 899999999999999887643222111 4566778899999998655443
No 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.23 E-value=6.2e-12 Score=116.01 Aligned_cols=108 Identities=24% Similarity=0.178 Sum_probs=70.3
Q ss_pred hhhhccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcc-cch
Q 003367 455 PSLFDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHA-LPQ 533 (826)
Q Consensus 455 ~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~-lp~ 533 (826)
|..+..+++|++|++++ | .+..+ ..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+. .|.
T Consensus 35 ~~~~~~l~~L~~L~l~~-----n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~ 107 (149)
T 2je0_A 35 EGLTDEFEELEFLSTIN-----V-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIE 107 (149)
T ss_dssp CSCCTTCTTCCEEECTT-----S-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHG
T ss_pred HHHHhhcCCCcEEECcC-----C-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHH
Confidence 44566677777777773 3 33333 5566777777777777774334666666677777777777774331 236
Q ss_pred hhhcccCCCeeeecCcccccCCc----cCCCCCCCCcCCc
Q 003367 534 GIAKLINLRHLINEGTPLLYLPK----GLERLTCLRTLSE 569 (826)
Q Consensus 534 ~i~~L~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L~~ 569 (826)
.++.+++|++|++++|.+..+|. .+..+++|+.|++
T Consensus 108 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 108 PLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp GGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred HHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 67777777777777777776665 4666777776654
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.23 E-value=2.9e-11 Score=116.66 Aligned_cols=41 Identities=22% Similarity=0.211 Sum_probs=30.0
Q ss_pred CCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCC
Q 003367 651 SPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQ 691 (826)
Q Consensus 651 ~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~ 691 (826)
+++|++|+|++|.+.+.+|..+..+++|++|+|++|.+...
T Consensus 101 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 101 LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 45666777777777776677777888888888888877654
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.19 E-value=9e-11 Score=113.16 Aligned_cols=39 Identities=13% Similarity=0.128 Sum_probs=24.0
Q ss_pred CCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCC
Q 003367 651 SPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKC 689 (826)
Q Consensus 651 ~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~ 689 (826)
+++|+.|+|++|.+..+++..+..+++|+.|+|++|.+.
T Consensus 101 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 101 LKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 345566666666666654445666677777777766653
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.17 E-value=2.2e-10 Score=121.07 Aligned_cols=96 Identities=13% Similarity=0.022 Sum_probs=57.1
Q ss_pred CCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccc-hhhcC--------CCCCcEEeccCCCCCccc
Q 003367 461 LTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELP-EALCD--------LCNLQTLDVSNCGNLHAL 531 (826)
Q Consensus 461 l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp-~~i~~--------L~~L~~L~L~~~~~~~~l 531 (826)
+++|++|||++|.+. .....-+.++.++++.+..+. +| ..|.+ +.+|+.|+|.+ .+...-
T Consensus 48 l~~L~~LdLs~n~i~------~~~~~~~~~~~~~~~~~~~~~----I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~ 116 (329)
T 3sb4_A 48 FPSLKVLDISNAEIK------MYSGKAGTYPNGKFYIYMANF----VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIE 116 (329)
T ss_dssp CTTCCEEEEEEEEEC------CEEESSSSSGGGCCEEECTTE----ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEEC
T ss_pred hccCeEEecCcceeE------EecCccccccccccccccccc----cCHHHhcccccccccccCCCcEEECCc-cccchh
Confidence 777888888844332 111111122234555555442 33 34666 88899999888 533333
Q ss_pred chhhhcccCCCeeeecCcccccCCcc-CCCCCCCCcC
Q 003367 532 PQGIAKLINLRHLINEGTPLLYLPKG-LERLTCLRTL 567 (826)
Q Consensus 532 p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L 567 (826)
+..|.++++|+.|+++.|.+..++.. |..+.++..+
T Consensus 117 ~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l 153 (329)
T 3sb4_A 117 DAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFI 153 (329)
T ss_dssp TTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEE
T ss_pred HHHhhcCcccceEEcCCCCccccchhhhcCCCceEEe
Confidence 45688889999999988888766654 5555544444
No 140
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.16 E-value=2.6e-11 Score=111.83 Aligned_cols=108 Identities=22% Similarity=0.254 Sum_probs=93.6
Q ss_pred ccCCCCcEEeccccccccccccc--cccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhh
Q 003367 459 DRLTCLRTLCLRCHERHFCLSIA--RLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIA 536 (826)
Q Consensus 459 ~~l~~Lr~L~L~~~~~~~~~~~~--~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~ 536 (826)
...++|+.|+++ +| .+. .+|..+..+++|++|++++|. +..+ ..++.+++|++|++++|.+.+.+|..++
T Consensus 14 ~~~~~l~~L~l~-----~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 85 (149)
T 2je0_A 14 RTPSDVKELVLD-----NS-RSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAE 85 (149)
T ss_dssp CCGGGCSEEECT-----TC-BCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHH
T ss_pred CCCccCeEEEcc-----CC-cCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHHHHhh
Confidence 345789999999 55 454 688888999999999999998 6666 6799999999999999997766898888
Q ss_pred cccCCCeeeecCcccccCC--ccCCCCCCCCcCCceeeCc
Q 003367 537 KLINLRHLINEGTPLLYLP--KGLERLTCLRTLSEFTVSD 574 (826)
Q Consensus 537 ~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~~~~~~~ 574 (826)
.+++|++|++++|.+..+| ..++.+++|++|++.+|..
T Consensus 86 ~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l 125 (149)
T 2je0_A 86 KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125 (149)
T ss_dssp HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc
Confidence 9999999999999999865 7799999999999887755
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.15 E-value=3.6e-13 Score=131.06 Aligned_cols=109 Identities=23% Similarity=0.245 Sum_probs=63.2
Q ss_pred hccCCCCcEEecccccccccc-ccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhh
Q 003367 458 FDRLTCLRTLCLRCHERHFCL-SIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIA 536 (826)
Q Consensus 458 ~~~l~~Lr~L~L~~~~~~~~~-~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~ 536 (826)
+.....++.++++.+.+.+.. .+..+|..+..+++|++|+|++|. +..+| .+.++++|++|++++|. +..+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNL-IKKIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCC-cccccchhh
Confidence 455556666666644332221 234444566667777777777766 55566 56667777777777766 345666666
Q ss_pred cccCCCeeeecCcccccCCccCCCCCCCCcCCce
Q 003367 537 KLINLRHLINEGTPLLYLPKGLERLTCLRTLSEF 570 (826)
Q Consensus 537 ~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~ 570 (826)
.+++|++|++++|.+..+| .++.+++|+.|++.
T Consensus 91 ~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~ 123 (198)
T 1ds9_A 91 VADTLEELWISYNQIASLS-GIEKLVNLRVLYMS 123 (198)
T ss_dssp HHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEES
T ss_pred cCCcCCEEECcCCcCCcCC-ccccCCCCCEEECC
Confidence 6666777777666665544 34444444444433
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.15 E-value=8.7e-11 Score=113.26 Aligned_cols=107 Identities=23% Similarity=0.267 Sum_probs=91.5
Q ss_pred CCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCC
Q 003367 462 TCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINL 541 (826)
Q Consensus 462 ~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L 541 (826)
++|++|+|+ ++ .+..+|..|..+++|++|+|++|.+....|..|.++++|++|+|++|.+....|..|..+++|
T Consensus 31 ~~l~~L~L~-----~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L 104 (193)
T 2wfh_A 31 RDVTELYLD-----GN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104 (193)
T ss_dssp TTCCEEECC-----SS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred CCCCEEECC-----CC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCC
Confidence 579999999 55 566788899999999999999999444445679999999999999999766666789999999
Q ss_pred CeeeecCcccccCCcc-CCCCCCCCcCCceeeCc
Q 003367 542 RHLINEGTPLLYLPKG-LERLTCLRTLSEFTVSD 574 (826)
Q Consensus 542 ~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~ 574 (826)
++|++++|.+..+|.. +..+++|+.|++.++..
T Consensus 105 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 105 RLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 9999999999998875 78899999998877755
No 143
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.14 E-value=7.2e-11 Score=112.21 Aligned_cols=128 Identities=21% Similarity=0.190 Sum_probs=88.2
Q ss_pred CCcceEEEEEecCCCCccccCCcccchhhhchhhhccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCC
Q 003367 424 ETKLRSLSIVHKSNSSTIFPGIRDSVADIALPSLFDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDA 503 (826)
Q Consensus 424 ~~~lr~l~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~ 503 (826)
...++.|+++++... . +|......++|++|++++| .+..+ ..+..+++|++|+|++|.
T Consensus 18 ~~~L~~L~l~~n~l~-~-------------i~~~~~~~~~L~~L~Ls~N------~l~~~-~~l~~l~~L~~L~Ls~N~- 75 (176)
T 1a9n_A 18 AVRDRELDLRGYKIP-V-------------IENLGATLDQFDAIDFSDN------EIRKL-DGFPLLRRLKTLLVNNNR- 75 (176)
T ss_dssp TTSCEEEECTTSCCC-S-------------CCCGGGGTTCCSEEECCSS------CCCEE-CCCCCCSSCCEEECCSSC-
T ss_pred cCCceEEEeeCCCCc-h-------------hHHhhhcCCCCCEEECCCC------CCCcc-cccccCCCCCEEECCCCc-
Confidence 556777777666222 1 1222233347888888843 34444 467778888888888887
Q ss_pred ccccchh-hcCCCCCcEEeccCCCCCcccch--hhhcccCCCeeeecCcccccCCcc----CCCCCCCCcCCceeeCc
Q 003367 504 IYELPEA-LCDLCNLQTLDVSNCGNLHALPQ--GIAKLINLRHLINEGTPLLYLPKG----LERLTCLRTLSEFTVSD 574 (826)
Q Consensus 504 ~~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~l~~~~l~~lp~~----i~~L~~L~~L~~~~~~~ 574 (826)
+..+|+. +..+++|++|++++|. ++.+|. .+..+++|++|++++|.+..+|.. +..+++|+.|++..+..
T Consensus 76 l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 76 ICRIGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCEECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred ccccCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 5566644 3778888888888887 466665 677888888888888888877764 77788888887776644
No 144
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.11 E-value=4e-10 Score=118.83 Aligned_cols=267 Identities=15% Similarity=0.066 Sum_probs=148.7
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
..++|++..++.+..++..... .......|.|+|++|+|||++|+++++.. .. ..+++.........++
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~~--~~---~~~~~~~~~~~~~~~l----- 80 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHEL--GV---NLRVTSGPAIEKPGDL----- 80 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHHH--TC---CEEEECTTTCCSHHHH-----
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHHh--CC---CEEEEeccccCChHHH-----
Confidence 5699999999998888753210 01123568899999999999999999843 22 2334444332222111
Q ss_pred HHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCCC------------------CCcEEEE
Q 003367 158 ESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGS------------------PESRILV 219 (826)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~------------------~~s~iiv 219 (826)
...+... ..+..+|+||++..-.....+.+...+.... ++.++|.
T Consensus 81 ----------------~~~l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~ 143 (324)
T 1hqc_A 81 ----------------AAILANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG 143 (324)
T ss_dssp ----------------HHHHTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEE
T ss_pred ----------------HHHHHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEE
Confidence 1111111 1356799999996655545555554443221 2356666
Q ss_pred ecccHH-HHhhcc--ccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHHhhhhcC---
Q 003367 220 TTRKED-VAKMMR--TTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTSGSLLSL--- 293 (826)
Q Consensus 220 TtR~~~-v~~~~~--~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~--- 293 (826)
||.... +...+. ....+.+.+++.++..+++...+........ .+..+.+++.++|.|..+..+...+..
T Consensus 144 ~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~ 219 (324)
T 1hqc_A 144 ATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRIT----EEAALEIGRRSRGTMRVAKRLFRRVRDFAQ 219 (324)
T ss_dssp EESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHSCSCHHHHHHHHHHHTTTST
T ss_pred eCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 666432 111111 1247899999999999998887654322211 456788999999999877665543321
Q ss_pred ---C--cCHHHHHHhhhhhcccccccCcCcchhhhhhccCCcHHHHHHhhhhccCCCCce-----------eCHHHHH--
Q 003367 294 ---K--TTMEQWKTVLDSEIWKVEDVEKGLLPPLVISYFDLPSIVRRCFSYCAIFPKGYE-----------INKDHLI-- 355 (826)
Q Consensus 294 ---~--~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~fp~~~~-----------i~~~~li-- 355 (826)
. -+.+....+... +...+..++...+..+..+.....+.. +++..+.
T Consensus 220 ~~~~~~i~~~~~~~~~~~---------------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~ 284 (324)
T 1hqc_A 220 VAGEEVITRERALEALAA---------------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEV 284 (324)
T ss_dssp TTSCSCCCHHHHHHHHHH---------------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHH---------------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHH
Confidence 1 123333333221 122344566666666655443222221 2333332
Q ss_pred --HHHHHcCCcccC-CCchHHHHHHHHHH-HHhhccCccc
Q 003367 356 --KLWMAQGYLKVE-GREDMELIGEECFV-NLATRSFFQD 391 (826)
Q Consensus 356 --~~w~a~g~i~~~-~~~~~~~~~~~~~~-~L~~~sll~~ 391 (826)
++-+..|++... .+....+.|.+|+. ++.+|+++|+
T Consensus 285 l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 285 HEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp THHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 235567777543 34556677888887 7888888764
No 145
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.09 E-value=1.4e-10 Score=111.95 Aligned_cols=106 Identities=20% Similarity=0.172 Sum_probs=88.7
Q ss_pred CCcEEeccccccccccccccccc--cccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccC
Q 003367 463 CLRTLCLRCHERHFCLSIARLPR--NIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLIN 540 (826)
Q Consensus 463 ~Lr~L~L~~~~~~~~~~~~~lp~--~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~ 540 (826)
+|++|+++ ++ .+..++. .++.+++|++|+|++|.+.+..|..|.++++|++|+|++|.+.+..|..+..+++
T Consensus 30 ~l~~L~l~-----~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 103 (192)
T 1w8a_A 30 HTTELLLN-----DN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQ 103 (192)
T ss_dssp TCSEEECC-----SC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTT
T ss_pred CCCEEECC-----CC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCC
Confidence 89999999 55 5556654 3889999999999999955556888999999999999999977766777899999
Q ss_pred CCeeeecCcccccC-CccCCCCCCCCcCCceeeCc
Q 003367 541 LRHLINEGTPLLYL-PKGLERLTCLRTLSEFTVSD 574 (826)
Q Consensus 541 L~~L~l~~~~l~~l-p~~i~~L~~L~~L~~~~~~~ 574 (826)
|++|++++|.+..+ |..+..+++|++|++.++..
T Consensus 104 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 104 LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 99999999999855 66788999999998877765
No 146
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.08 E-value=4.1e-10 Score=118.73 Aligned_cols=186 Identities=19% Similarity=0.182 Sum_probs=116.7
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
..++|++..++.+..++... ..+.+.|+|++|+||||+|+.+++..........+++++.+.......+ .+++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~ 93 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG------NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQI 93 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHH
T ss_pred HHHHCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHH
Confidence 46999999999999998653 2233899999999999999999985321111112344443332222111 1111
Q ss_pred HHhcccchhhhhHHHHHHHHHHHh-cCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccHH-HHhh-ccccc
Q 003367 158 ESFRDVVSAVAAFDTLLRHIEKSV-KGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKED-VAKM-MRTTS 234 (826)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~~-v~~~-~~~~~ 234 (826)
+.+... ...+ .+++.+||+||++.-....++.+...+.....++++|+||+... +... .....
T Consensus 94 ~~~~~~--------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~ 159 (323)
T 1sxj_B 94 KHFAQK--------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCA 159 (323)
T ss_dssp HHHHHB--------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHhc--------------cccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhce
Confidence 111100 0011 34688999999976555666666666665566788888887643 1111 12234
Q ss_pred eEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchh-HHHHh
Q 003367 235 MILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLA-AKTSG 288 (826)
Q Consensus 235 ~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLa-l~~~~ 288 (826)
.+++.+++.++..+++...+........ .+..+.|++.++|.|.. +..+.
T Consensus 160 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 160 ILRYSKLSDEDVLKRLLQIIKLEDVKYT----NDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred EEeecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 8999999999999999887643222111 45667899999999954 44443
No 147
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.04 E-value=3.9e-10 Score=107.25 Aligned_cols=41 Identities=17% Similarity=0.087 Sum_probs=27.6
Q ss_pred CCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCC
Q 003367 650 PSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCE 690 (826)
Q Consensus 650 ~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~ 690 (826)
.+++|++|++++|.+..+++..+..+++|++|+|++|.+.+
T Consensus 98 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 98 KLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 34566677777777776645556677777777777776654
No 148
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.03 E-value=2.3e-10 Score=108.68 Aligned_cols=108 Identities=23% Similarity=0.197 Sum_probs=89.2
Q ss_pred hhccCCCCcEEeccccccccccccccccccccCCC-CccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccch-h
Q 003367 457 LFDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLK-HLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQ-G 534 (826)
Q Consensus 457 ~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~-~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~-~ 534 (826)
.+.++.+|++|+++ +| .+..+|. +..+. +|++|++++|. +..+ +.+..+++|++|++++|.+. .+|. .
T Consensus 14 ~~~~~~~L~~L~l~-----~n-~l~~i~~-~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~ 83 (176)
T 1a9n_A 14 QYTNAVRDRELDLR-----GY-KIPVIEN-LGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGL 83 (176)
T ss_dssp EEECTTSCEEEECT-----TS-CCCSCCC-GGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSCCC-EECSCH
T ss_pred hcCCcCCceEEEee-----CC-CCchhHH-hhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCccc-ccCcch
Confidence 46788999999999 44 5555654 55555 99999999998 6666 56999999999999999954 5554 4
Q ss_pred hhcccCCCeeeecCcccccCCc--cCCCCCCCCcCCceeeCc
Q 003367 535 IAKLINLRHLINEGTPLLYLPK--GLERLTCLRTLSEFTVSD 574 (826)
Q Consensus 535 i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~~~~~~~ 574 (826)
++.+++|++|++++|.+..+|. .+..+++|+.|++.++..
T Consensus 84 ~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i 125 (176)
T 1a9n_A 84 DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125 (176)
T ss_dssp HHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred hhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCC
Confidence 5999999999999999999887 788999999998877655
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.01 E-value=7.4e-10 Score=104.65 Aligned_cols=101 Identities=24% Similarity=0.266 Sum_probs=80.8
Q ss_pred cEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccch-hhhcccCCCe
Q 003367 465 RTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQ-GIAKLINLRH 543 (826)
Q Consensus 465 r~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~ 543 (826)
+.++++ ++ .+..+|..+. .+|++|+|++|.+.+..|..|.++++|++|+|++|.+. .+|. .|.++++|++
T Consensus 15 ~~l~~~-----~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 15 TLVNCQ-----NI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQ 85 (174)
T ss_dssp SEEECC-----SS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred cEEEeC-----CC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhE
Confidence 678887 55 6677887664 88999999999844444677889999999999999854 4554 4688999999
Q ss_pred eeecCcccccCCcc-CCCCCCCCcCCceeeCc
Q 003367 544 LINEGTPLLYLPKG-LERLTCLRTLSEFTVSD 574 (826)
Q Consensus 544 L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~ 574 (826)
|++++|.+..+|.. +..+++|++|++.+|..
T Consensus 86 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 86 LDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred EECCCCccceeCHHHhccccCCCEEEeCCCCc
Confidence 99999999988876 88899999998887765
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.00 E-value=8e-10 Score=104.09 Aligned_cols=103 Identities=22% Similarity=0.190 Sum_probs=84.5
Q ss_pred CcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhcccCCCe
Q 003367 464 LRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRH 543 (826)
Q Consensus 464 Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 543 (826)
.++++++ ++ .+..+|..+. .+|++|+|++|.+.+..|..|.++++|++|+|++|.+.+..|..|..+++|++
T Consensus 11 ~~~l~~s-----~n-~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 11 GTTVDCS-----GK-SLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ 82 (170)
T ss_dssp TTEEECT-----TS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCEEEeC-----CC-CcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCE
Confidence 5688888 55 6777887664 88999999999944444777999999999999999865544455789999999
Q ss_pred eeecCcccccCCcc-CCCCCCCCcCCceeeCc
Q 003367 544 LINEGTPLLYLPKG-LERLTCLRTLSEFTVSD 574 (826)
Q Consensus 544 L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~ 574 (826)
|++++|.+..+|.. +.++++|+.|++.+|..
T Consensus 83 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 83 LSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECCCCccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 99999999988875 88999999998888765
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.00 E-value=2.3e-10 Score=120.90 Aligned_cols=290 Identities=12% Similarity=0.063 Sum_probs=148.7
Q ss_pred cCCCCcEEeccccccccccccccccccccC-CCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccchhhhc-
Q 003367 460 RLTCLRTLCLRCHERHFCLSIARLPRNIKK-LKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQGIAK- 537 (826)
Q Consensus 460 ~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~-l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~- 537 (826)
.+.+++.|.++ +......+ ..+.. +++|++|||++|. +......-+.++.+..+.+..+. .-+..|.+
T Consensus 23 ~~~~l~~L~l~-----g~i~~~~~-~~l~~~l~~L~~LdLs~n~-i~~~~~~~~~~~~~~~~~~~~~~---I~~~aF~~~ 92 (329)
T 3sb4_A 23 EANSITHLTLT-----GKLNAEDF-RHLRDEFPSLKVLDISNAE-IKMYSGKAGTYPNGKFYIYMANF---VPAYAFSNV 92 (329)
T ss_dssp HHHHCSEEEEE-----EEECHHHH-HHHHHSCTTCCEEEEEEEE-ECCEEESSSSSGGGCCEEECTTE---ECTTTTEEE
T ss_pred hhCceeEEEEe-----ccccHHHH-HHHHHhhccCeEEecCcce-eEEecCccccccccccccccccc---cCHHHhccc
Confidence 35578888887 32111111 12223 7889999999998 44111111222334555555542 12245667
Q ss_pred -------ccCCCeeeecCcccccCCcc-CCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChh
Q 003367 538 -------LINLRHLINEGTPLLYLPKG-LERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVG 609 (826)
Q Consensus 538 -------L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~ 609 (826)
+++|+.|++.. .++.++.. |.++++|+.|.+..+.... + ....+.....+..+.... ........
T Consensus 93 ~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~-i-~~~aF~~~~~l~~l~~~~----~~~~~~~~ 165 (329)
T 3sb4_A 93 VNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPN-L-LPEALADSVTAIFIPLGS----SDAYRFKN 165 (329)
T ss_dssp ETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCE-E-CTTSSCTTTCEEEECTTC----THHHHTST
T ss_pred ccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccc-c-chhhhcCCCceEEecCcc----hhhhhccc
Confidence 99999999998 88888765 8999999999887665421 1 122222222222111000 00000000
Q ss_pred hhhhhhccCCCcCC-ceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcc-cCccCCcEEEEecCC
Q 003367 610 EAKSAKLESKKHLV-CLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWL-MSLTELRMLNLQRCG 687 (826)
Q Consensus 610 ~~~~~~l~~~~~L~-~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l-~~l~~L~~L~L~~~~ 687 (826)
......+.++..|+ .+.+... + .........-..+.++..+.+.++-.... ...+ ..+++|+.|+|++|.
T Consensus 166 ~i~~~~f~~~~~L~~~i~~~~~--~-----~l~~~~~~~~~~~~~~~~l~~~~~l~~~~-~~~l~~~~~~L~~l~L~~n~ 237 (329)
T 3sb4_A 166 RWEHFAFIEGEPLETTIQVGAM--G-----KLEDEIMKAGLQPRDINFLTIEGKLDNAD-FKLIRDYMPNLVSLDISKTN 237 (329)
T ss_dssp TTTTSCEEESCCCEEEEEECTT--C-----CHHHHHHHTTCCGGGCSEEEEEECCCHHH-HHHHHHHCTTCCEEECTTBC
T ss_pred cccccccccccccceeEEecCC--C-----cHHHHHhhcccCccccceEEEeeeecHHH-HHHHHHhcCCCeEEECCCCC
Confidence 00111122222222 1111100 0 01111222222345566666665421111 1111 136777777777776
Q ss_pred CCCCCC-CCCCCCccceeeccccccceEeCcccccCCCCccccCccCcCCCccc-eeeccccccccccccccccccCcCC
Q 003367 688 KCEQLP-SLGRLPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLK-FLEFRDMDEWEEWDYVISGQKDIKI 765 (826)
Q Consensus 688 ~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~~~~~~~~~~~~ 765 (826)
+....+ .+.++++|+.|++.+. ++.++...+ .++++|+ .+.+.+ .++.+. +..|..
T Consensus 238 i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF-------------~~~~~L~~~l~l~~--~l~~I~-----~~aF~~ 295 (329)
T 3sb4_A 238 ATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVF-------------SNCGRLAGTLELPA--SVTAIE-----FGAFMG 295 (329)
T ss_dssp CCEECTTTTTTCTTCCEEECCTT--CCEECTTTT-------------TTCTTCCEEEEECT--TCCEEC-----TTTTTT
T ss_pred cceecHhhhhCCCCCCEEECCcc--cceehHHHh-------------hCChhccEEEEEcc--cceEEc-----hhhhhC
Confidence 553333 6777777777777642 444443322 2567777 777765 344443 346677
Q ss_pred CCccceeeecCCCCCCCCCC-CCcccCCcceEE
Q 003367 766 MPRLHRLKLDGCHKLKALPD-HLLLTTKMNELT 797 (826)
Q Consensus 766 l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~ 797 (826)
+++|+.|++++ +.++.++. .+..+++|+.|+
T Consensus 296 c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 296 CDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred CccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 88888888877 35666665 456677888775
No 152
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.94 E-value=4.6e-09 Score=110.84 Aligned_cols=183 Identities=16% Similarity=0.096 Sum_probs=116.8
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
..++|+++.++.+..++... ..+.+.|+|++|+||||+|+.+++.......-...+.+..+.......+
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~----- 93 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVI----- 93 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTT-----
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHH-----
Confidence 45899999999999998653 3345899999999999999999985321110012333333221110000
Q ss_pred HHhcccchhhhhHHHHHHHHHH---HhcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccHHH-Hhhc-cc
Q 003367 158 ESFRDVVSAVAAFDTLLRHIEK---SVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKEDV-AKMM-RT 232 (826)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~l~~---~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~~v-~~~~-~~ 232 (826)
......... ...+++.++|+||++.-....++.+...+.....+.++|+||....- ...+ ..
T Consensus 94 -------------~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 160 (327)
T 1iqp_A 94 -------------REKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 160 (327)
T ss_dssp -------------HHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHT
T ss_pred -------------HHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhh
Confidence 001111111 11267889999999766666777787777766677889888876431 1111 12
Q ss_pred cceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHHh
Q 003367 233 TSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTSG 288 (826)
Q Consensus 233 ~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~ 288 (826)
...+.+.+++.++..+++...+........ .+..+.|++.++|.|..+..+.
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~~~~~l 212 (327)
T 1iqp_A 161 CAIFRFRPLRDEDIAKRLRYIAENEGLELT----EEGLQAILYIAEGDMRRAINIL 212 (327)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTTCEEC----HHHHHHHHHHHTTCHHHHHHHH
T ss_pred CcEEEecCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHCCCCHHHHHHHH
Confidence 347899999999999999887654332222 4566788999999998655443
No 153
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.94 E-value=2.4e-09 Score=101.74 Aligned_cols=106 Identities=27% Similarity=0.305 Sum_probs=87.4
Q ss_pred CCCcEEeccccccccccccccccc-cccCCCCccEEEccCCCCccccc-hhhcCCCCCcEEeccCCCCCcccchhhhccc
Q 003367 462 TCLRTLCLRCHERHFCLSIARLPR-NIKKLKHLRYLNLSNNDAIYELP-EALCDLCNLQTLDVSNCGNLHALPQGIAKLI 539 (826)
Q Consensus 462 ~~Lr~L~L~~~~~~~~~~~~~lp~-~i~~l~~L~~L~Ls~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~ 539 (826)
++|++|+++ ++ .+..+|. .+..+++|++|++++|. +..+| ..+..+++|++|++++|.+.+..+..+..++
T Consensus 28 ~~l~~L~l~-----~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 100 (177)
T 2o6r_A 28 SSATRLELE-----SN-KLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLT 100 (177)
T ss_dssp TTCSEEECC-----SS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCcEEEeC-----CC-cccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCCCccccCHHHhhCCc
Confidence 689999999 44 4555554 56899999999999998 55665 4578999999999999996655555678999
Q ss_pred CCCeeeecCcccccCCcc-CCCCCCCCcCCceeeCc
Q 003367 540 NLRHLINEGTPLLYLPKG-LERLTCLRTLSEFTVSD 574 (826)
Q Consensus 540 ~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~ 574 (826)
+|++|++++|.+..+|.. +..+++|++|++.++..
T Consensus 101 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 101 QLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 999999999999998877 57899999998887765
No 154
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.91 E-value=5e-11 Score=115.76 Aligned_cols=111 Identities=23% Similarity=0.265 Sum_probs=96.3
Q ss_pred chhhhccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccch
Q 003367 454 LPSLFDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQ 533 (826)
Q Consensus 454 ~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~ 533 (826)
+|..|..+++|++|+++ +| .+..+| .+..+++|++|++++|. +..+|..+..+++|++|++++|. +..+|
T Consensus 40 l~~~~~~l~~L~~L~ls-----~n-~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~-l~~l~- 109 (198)
T 1ds9_A 40 MDATLSTLKACKHLALS-----TN-NIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLS- 109 (198)
T ss_dssp CHHHHHHTTTCSEEECS-----EE-EESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE-CCCHH-
T ss_pred hhHHHhcCCCCCEEECC-----CC-CCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc-CCcCC-
Confidence 35689999999999999 55 566678 89999999999999998 77899888889999999999998 45576
Q ss_pred hhhcccCCCeeeecCcccccCCc--cCCCCCCCCcCCceeeCc
Q 003367 534 GIAKLINLRHLINEGTPLLYLPK--GLERLTCLRTLSEFTVSD 574 (826)
Q Consensus 534 ~i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~~~~~~~ 574 (826)
.+..+++|++|++++|.+..+|. .+..+++|++|++.++..
T Consensus 110 ~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 110 GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 79999999999999999997765 688999999998877654
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.88 E-value=9.1e-08 Score=103.16 Aligned_cols=272 Identities=13% Similarity=0.133 Sum_probs=155.5
Q ss_pred cCCCCcEEecccccccccccccccc-ccccCCCCccEEEccCCCCccccc-hhhcCCCCCcEEeccCCCCCcccchhhhc
Q 003367 460 RLTCLRTLCLRCHERHFCLSIARLP-RNIKKLKHLRYLNLSNNDAIYELP-EALCDLCNLQTLDVSNCGNLHALPQGIAK 537 (826)
Q Consensus 460 ~l~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~l~~L~~L~Ls~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~ 537 (826)
.+..++.+.+. . .+..++ .+|.++ +|+.+.+..+ +..++ ..|.+ .+|+.+.+.. .+...-+..|.+
T Consensus 111 ~~~~l~~i~ip-----~--~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~ 178 (401)
T 4fdw_A 111 ILKGYNEIILP-----N--SVKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYY 178 (401)
T ss_dssp ECSSCSEEECC-----T--TCCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTT
T ss_pred ecCCccEEEEC-----C--ccCEehHhhcccC-CccEEEeCCC--ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhC
Confidence 34555555554 1 233332 344443 5777776655 33443 33555 3577777765 322223355667
Q ss_pred ccCCCeeeecCcccccCCccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhcc
Q 003367 538 LINLRHLINEGTPLLYLPKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLE 617 (826)
Q Consensus 538 L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~ 617 (826)
+.+|+.++++.|.+..+|.......+|+.+.+... +..+ . ...+.
T Consensus 179 c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I-~--------------------------------~~aF~ 223 (401)
T 4fdw_A 179 CYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT--LKEI-G--------------------------------SQAFL 223 (401)
T ss_dssp CTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT--CCEE-C--------------------------------TTTTT
T ss_pred cccCCeeecCCCcceEechhhEeecccCEEEeCCc--hhee-h--------------------------------hhHhh
Confidence 77777777777667766665444455555533210 0000 0 11222
Q ss_pred CCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCC----CCCC
Q 003367 618 SKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKC----EQLP 693 (826)
Q Consensus 618 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~----~~l~ 693 (826)
++.+|+.+.+..+ +.... ...+.. .+|+.+.|. +.+..+.+..|..+++|+.+++.++... ..++
T Consensus 224 ~~~~L~~l~l~~~-l~~I~--------~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~ 292 (401)
T 4fdw_A 224 KTSQLKTIEIPEN-VSTIG--------QEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIH 292 (401)
T ss_dssp TCTTCCCEECCTT-CCEEC--------TTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEEC
T ss_pred CCCCCCEEecCCC-ccCcc--------cccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEEC
Confidence 3333444433321 00000 112333 578888884 4456665778889999999999887654 1233
Q ss_pred --CCCCCCccceeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCCCccce
Q 003367 694 --SLGRLPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHR 771 (826)
Q Consensus 694 --~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~ 771 (826)
.+.++++|+.+.|.+ .++.++...+ .++++|+.+.|..+ +..+. ...+..+ +|+.
T Consensus 293 ~~aF~~c~~L~~l~l~~--~i~~I~~~aF-------------~~c~~L~~l~lp~~--l~~I~-----~~aF~~~-~L~~ 349 (401)
T 4fdw_A 293 PYCLEGCPKLARFEIPE--SIRILGQGLL-------------GGNRKVTQLTIPAN--VTQIN-----FSAFNNT-GIKE 349 (401)
T ss_dssp TTTTTTCTTCCEECCCT--TCCEECTTTT-------------TTCCSCCEEEECTT--CCEEC-----TTSSSSS-CCCE
T ss_pred HHHhhCCccCCeEEeCC--ceEEEhhhhh-------------cCCCCccEEEECcc--ccEEc-----HHhCCCC-CCCE
Confidence 788999999999973 3555554332 36789999999654 44443 3567778 9999
Q ss_pred eeecCCCCCCCCCCC-Cccc-CCcceEEEccccchHHHhcCCCCcc
Q 003367 772 LKLDGCHKLKALPDH-LLLT-TKMNELTMNWCSVLKERYGRTGDWR 815 (826)
Q Consensus 772 L~l~~c~~l~~lp~~-l~~l-~~L~~L~l~~c~~l~~~~~~~~~~~ 815 (826)
|++.++. +..++.. +..+ ..++.|++.... .+.+.....|.
T Consensus 350 l~l~~n~-~~~l~~~~F~~~~~~l~~l~vp~~~--~~~y~~a~~W~ 392 (401)
T 4fdw_A 350 VKVEGTT-PPQVFEKVWYGFPDDITVIRVPAES--VEKYKNANGWR 392 (401)
T ss_dssp EEECCSS-CCBCCCSSCCCSCTTCCEEEECGGG--HHHHHHSTTGG
T ss_pred EEEcCCC-CcccccccccCCCCCccEEEeCHHH--HHHhhhccchh
Confidence 9999964 4555543 4445 478899997643 34444434576
No 156
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.85 E-value=2.5e-08 Score=107.37 Aligned_cols=195 Identities=16% Similarity=0.179 Sum_probs=116.3
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
..++|+++.++.+...+.... ....+.|+|+.|+||||+|+.+++.......+.. ..+.. ......+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~~----~~~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGV----CDNCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS---SCCSS----SHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCCcc----cHHHHHHh
Confidence 459999999999999986532 2357899999999999999999885432111100 00000 00011111
Q ss_pred HH----h-ccc---chhhhhHHHHHHHHHHH-hcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccHH-HH
Q 003367 158 ES----F-RDV---VSAVAAFDTLLRHIEKS-VKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKED-VA 227 (826)
Q Consensus 158 ~~----l-~~~---~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~~-v~ 227 (826)
.. + ... ........++.+.+... ..+++.+||+||++.-+...++.+...+.....+..+|++|.... +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 00 0 000 00111222222221111 135678999999976666677778777766666777777776432 11
Q ss_pred hh-ccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHHh
Q 003367 228 KM-MRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTSG 288 (826)
Q Consensus 228 ~~-~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~ 288 (826)
.. ......+++.+++.++..+++...+...+.... .+..+.|++.++|.|..+..+.
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~----~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHCCCCHHHHHHHH
Confidence 11 122467899999999999999876533222111 4556789999999998776554
No 157
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.77 E-value=2.9e-08 Score=104.27 Aligned_cols=181 Identities=15% Similarity=0.135 Sum_probs=113.8
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCC-CcEEEEEeCCCCCHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHF-DKRIWVCFSDPVDEIRVAKAI 156 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i 156 (826)
.+++|++..++.+.+++... ..+.+.|+|++|+|||++|+.+++... ...+ ...+.++.+.......+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~---- 85 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVV---- 85 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCTTTS----
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccChHHH----
Confidence 46899999999998887543 223489999999999999999998431 1111 12233444332111100
Q ss_pred HHHhcccchhhhhHHHHHHHHHHH--h-cCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccHH-HHhh-cc
Q 003367 157 LESFRDVVSAVAAFDTLLRHIEKS--V-KGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKED-VAKM-MR 231 (826)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~~-v~~~-~~ 231 (826)
......+... + .+++.++|+|+++.-.....+.+...+.....+.++|+||.... +... ..
T Consensus 86 --------------~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 86 --------------RHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp --------------SHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred --------------HHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 0111111111 1 25688999999965555556667777766666778888876543 1111 12
Q ss_pred ccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHH
Q 003367 232 TTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTS 287 (826)
Q Consensus 232 ~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 287 (826)
....+.+.+++.++..+++...+........ .+..+.+++.++|.+..+...
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCCCBC----HHHHHHHHHTTTTCHHHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 2347999999999999999887654332222 456677889999999765443
No 158
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.77 E-value=2.9e-08 Score=101.82 Aligned_cols=172 Identities=15% Similarity=0.050 Sum_probs=106.9
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhccccccc------CCCcEEEEEeCCCCCHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDA------HFDKRIWVCFSDPVDEIR 151 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~------~f~~~~wv~~~~~~~~~~ 151 (826)
..+.|||+|.++|...|...-. ......+.|+|++|+|||++|++|+++..... .| .+++|++....+...
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~ 96 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HH
T ss_pred cccCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHH
Confidence 3488999999999988765321 23567899999999999999999998653211 12 356777777788889
Q ss_pred HHHHHHHHhcccchh-hhhHHHHHHHHHHH--hcCCceeEEeccCCCCChhhHHHHHhhhcCC-CCCc--EEEEecccHH
Q 003367 152 VAKAILESFRDVVSA-VAAFDTLLRHIEKS--VKGKKFLLVLDDVWSGNPTKWEELVSTLKFG-SPES--RILVTTRKED 225 (826)
Q Consensus 152 ~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~--l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~-~~~s--~iivTtR~~~ 225 (826)
++..|++++.+.... ....+.+...+... -.+++++||||+++.-. +-+.+...+.+. ...+ .||.++...+
T Consensus 97 ~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 97 LYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 999999999654211 11223333333332 24678999999995432 223344443321 1223 3333343321
Q ss_pred -----HH----hhccccceEEccCCCCchhHHHHHHhhh
Q 003367 226 -----VA----KMMRTTSMILLAKLPDNDCWSLFSQIAF 255 (826)
Q Consensus 226 -----v~----~~~~~~~~~~l~~L~~~~~~~lf~~~a~ 255 (826)
+. ..+. ...+.+.+++.+|-.+++.+++.
T Consensus 175 ~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 175 TIREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred cchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 11 1111 24689999999999999988763
No 159
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.76 E-value=1.6e-08 Score=95.42 Aligned_cols=91 Identities=22% Similarity=0.311 Sum_probs=75.5
Q ss_pred CCCcEEeccccccccccccccc-cccccCCCCccEEEccCCCCccccchh-hcCCCCCcEEeccCCCCCcccch-hhhcc
Q 003367 462 TCLRTLCLRCHERHFCLSIARL-PRNIKKLKHLRYLNLSNNDAIYELPEA-LCDLCNLQTLDVSNCGNLHALPQ-GIAKL 538 (826)
Q Consensus 462 ~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l~~L~~L~Ls~~~~~~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~-~i~~L 538 (826)
++|++|+|+ ++ .+..+ |..|..+++|++|+|++|. +..+|.. |.++++|++|+|++|.+. .+|. .+..+
T Consensus 33 ~~L~~L~Ls-----~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l 104 (174)
T 2r9u_A 33 TDKQRLWLN-----NN-QITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNL 104 (174)
T ss_dssp TTCSEEECC-----SS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred CCCcEEEeC-----CC-CccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCccc-eeCHHHhccc
Confidence 789999999 55 45555 6789999999999999998 6677755 689999999999999955 5554 59999
Q ss_pred cCCCeeeecCcccccCCccCCC
Q 003367 539 INLRHLINEGTPLLYLPKGLER 560 (826)
Q Consensus 539 ~~L~~L~l~~~~l~~lp~~i~~ 560 (826)
++|++|++++|++...+..+..
T Consensus 105 ~~L~~L~L~~N~~~c~~~~~~~ 126 (174)
T 2r9u_A 105 KSLTHIYLYNNPWDCECRDIMY 126 (174)
T ss_dssp TTCSEEECCSSCBCTTBGGGHH
T ss_pred cCCCEEEeCCCCcccccccHHH
Confidence 9999999999999877765443
No 160
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.71 E-value=3.3e-08 Score=92.90 Aligned_cols=88 Identities=24% Similarity=0.273 Sum_probs=73.0
Q ss_pred CCCcEEeccccccccccccccc-cccccCCCCccEEEccCCCCccccch-hhcCCCCCcEEeccCCCCCcccchhhhccc
Q 003367 462 TCLRTLCLRCHERHFCLSIARL-PRNIKKLKHLRYLNLSNNDAIYELPE-ALCDLCNLQTLDVSNCGNLHALPQGIAKLI 539 (826)
Q Consensus 462 ~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~l~~L~~L~Ls~~~~~~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~ 539 (826)
++|++|+|+ +| .+..+ |..|..+++|++|+|++|. +..+|. .|.++++|++|+|++|.+.+..+..+..++
T Consensus 30 ~~l~~L~L~-----~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 102 (170)
T 3g39_A 30 TTTQVLYLY-----DN-QITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLK 102 (170)
T ss_dssp TTCSEEECC-----SS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCcEEEcC-----CC-cCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCC
Confidence 789999999 55 55555 6779999999999999999 666665 468999999999999996554455699999
Q ss_pred CCCeeeecCcccccCCc
Q 003367 540 NLRHLINEGTPLLYLPK 556 (826)
Q Consensus 540 ~L~~L~l~~~~l~~lp~ 556 (826)
+|++|++++|++...+.
T Consensus 103 ~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 103 SLTHIWLLNNPWDCACS 119 (170)
T ss_dssp TCCEEECCSSCBCTTBG
T ss_pred CCCEEEeCCCCCCCCch
Confidence 99999999998875554
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.69 E-value=2.7e-08 Score=105.90 Aligned_cols=94 Identities=18% Similarity=0.117 Sum_probs=64.8
Q ss_pred ccccccccccCCCCccEEEccC-CCCccccc-hhhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCcccccCCc
Q 003367 479 SIARLPRNIKKLKHLRYLNLSN-NDAIYELP-EALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPLLYLPK 556 (826)
Q Consensus 479 ~~~~lp~~i~~l~~L~~L~Ls~-~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~lp~ 556 (826)
.+..+|. +..+.+|++|+|++ |. +..+| ..|.+|.+|++|+|++|.+.+..|..|.+|++|++|+|++|.+..+|.
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 97 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW 97 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred CCCccCC-CCCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCH
Confidence 4556777 77777777888775 66 44444 567777778888887777666566667777778888877777777776
Q ss_pred cCCCCCCCCcCCceeeCc
Q 003367 557 GLERLTCLRTLSEFTVSD 574 (826)
Q Consensus 557 ~i~~L~~L~~L~~~~~~~ 574 (826)
.+.....|+.|++.++..
T Consensus 98 ~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 98 KTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp TTTCSCCCCEEECCSSCC
T ss_pred HHcccCCceEEEeeCCCc
Confidence 644333477776666544
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.67 E-value=6.2e-07 Score=96.64 Aligned_cols=241 Identities=12% Similarity=0.147 Sum_probs=150.3
Q ss_pred chhhhccCCCCcEEecccccccccccccccc-ccccCCCCccEEEccCCCCccccc-hhhcCCCCCcEEeccCCCCCccc
Q 003367 454 LPSLFDRLTCLRTLCLRCHERHFCLSIARLP-RNIKKLKHLRYLNLSNNDAIYELP-EALCDLCNLQTLDVSNCGNLHAL 531 (826)
Q Consensus 454 ~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~l~~L~~L~Ls~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~l 531 (826)
-...|.++ +|+.+.+. . .+..++ .+|.++ +|+.+.+.. . +..++ ..|.++.+|+.+++.+|. +..+
T Consensus 128 ~~~aF~~~-~L~~i~l~-----~--~i~~I~~~aF~~~-~L~~i~lp~-~-l~~I~~~aF~~c~~L~~l~l~~n~-l~~I 195 (401)
T 4fdw_A 128 PKDAFRNS-QIAKVVLN-----E--GLKSIGDMAFFNS-TVQEIVFPS-T-LEQLKEDIFYYCYNLKKADLSKTK-ITKL 195 (401)
T ss_dssp CTTTTTTC-CCSEEECC-----T--TCCEECTTTTTTC-CCCEEECCT-T-CCEECSSTTTTCTTCCEEECTTSC-CSEE
T ss_pred hHhhcccC-CccEEEeC-----C--CccEECHHhcCCC-CceEEEeCC-C-ccEehHHHhhCcccCCeeecCCCc-ceEe
Confidence 35678776 79999987 3 244553 456664 799999986 3 55554 679999999999999887 5566
Q ss_pred chhhhcccCCCeeeecCcccccCCcc-CCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhh
Q 003367 532 PQGIAKLINLRHLINEGTPLLYLPKG-LERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGE 610 (826)
Q Consensus 532 p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~ 610 (826)
|.......+|+.+.+.. .+..++.. |.++++|+.+.+..+ +..+ ...
T Consensus 196 ~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~--l~~I-~~~---------------------------- 243 (401)
T 4fdw_A 196 PASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN--VSTI-GQE---------------------------- 243 (401)
T ss_dssp CTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT--CCEE-CTT----------------------------
T ss_pred chhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC--ccCc-ccc----------------------------
Confidence 65544478999999984 47777654 788888888765321 0010 000
Q ss_pred hhhhhccCCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCC-----CCCCCcccCccCCcEEEEec
Q 003367 611 AKSAKLESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSK-----IISPSWLMSLTELRMLNLQR 685 (826)
Q Consensus 611 ~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~-----~~~p~~l~~l~~L~~L~L~~ 685 (826)
.+.+ .+|+.+.+.. .+... ....+..+++|+.+.+.++... .+.+..|..+++|+.++|.+
T Consensus 244 ----aF~~-~~L~~i~lp~-~i~~I--------~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 244 ----AFRE-SGITTVKLPN-GVTNI--------ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp ----TTTT-CCCSEEEEET-TCCEE--------CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred ----cccc-CCccEEEeCC-CccEE--------ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence 1111 2344444421 11100 1234667788888888877654 34466778888888888884
Q ss_pred CCCCCCCC--CCCCCCccceeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccccccccccccccccCc
Q 003367 686 CGKCEQLP--SLGRLPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDI 763 (826)
Q Consensus 686 ~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 763 (826)
+ + ..++ .+.++++|+.+.|.. .+..++...+ .++ +|+.+.+.++. +..+. ...+
T Consensus 310 ~-i-~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF-------------~~~-~L~~l~l~~n~-~~~l~-----~~~F 365 (401)
T 4fdw_A 310 S-I-RILGQGLLGGNRKVTQLTIPA--NVTQINFSAF-------------NNT-GIKEVKVEGTT-PPQVF-----EKVW 365 (401)
T ss_dssp T-C-CEECTTTTTTCCSCCEEEECT--TCCEECTTSS-------------SSS-CCCEEEECCSS-CCBCC-----CSSC
T ss_pred c-e-EEEhhhhhcCCCCccEEEECc--cccEEcHHhC-------------CCC-CCCEEEEcCCC-Ccccc-----cccc
Confidence 3 3 3343 677888888888853 2444443322 256 78888888772 33322 2334
Q ss_pred CCCC-ccceeeecC
Q 003367 764 KIMP-RLHRLKLDG 776 (826)
Q Consensus 764 ~~l~-~L~~L~l~~ 776 (826)
..++ +++.|++..
T Consensus 366 ~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 366 YGFPDDITVIRVPA 379 (401)
T ss_dssp CCSCTTCCEEEECG
T ss_pred cCCCCCccEEEeCH
Confidence 4553 677777765
No 163
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.65 E-value=5.1e-08 Score=97.71 Aligned_cols=174 Identities=13% Similarity=0.077 Sum_probs=102.2
Q ss_pred Cccccc---hHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHH
Q 003367 78 SKVRGR---DEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAK 154 (826)
Q Consensus 78 ~~~vGr---~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 154 (826)
..|+|+ +..++.+..+.... ..+.+.|+|++|+||||+|+++++... .....+.|+.+......
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~~~--~~~~~~~~~~~~~~~~~----- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACARAN--ELERRSFYIPLGIHASI----- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEGGGGGGS-----
T ss_pred hhccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEHHHHHHH-----
Confidence 456663 35566666666432 346799999999999999999998433 22334567765431110
Q ss_pred HHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCChhh--HHHHHhhhcCC-CCC-cEEEEecccHH-----
Q 003367 155 AILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTK--WEELVSTLKFG-SPE-SRILVTTRKED----- 225 (826)
Q Consensus 155 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~--~~~l~~~~~~~-~~~-s~iivTtR~~~----- 225 (826)
+. . .+ +. -.++.+||+||++...... .+.+...+... ..+ .++|+||+...
T Consensus 95 -----~~----~---------~~-~~-~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 95 -----ST----A---------LL-EG-LEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp -----CG----G---------GG-TT-GGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred -----HH----H---------HH-Hh-ccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 00 0 00 00 1356799999995533222 33344333211 112 24777776321
Q ss_pred ----HHhhccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHHh
Q 003367 226 ----VAKMMRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTSG 288 (826)
Q Consensus 226 ----v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~ 288 (826)
+...+.....+++.+++.++..+++...+........ .+..+.+++.++|.+-.+..+.
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLP----EDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCC----HHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHccCCHHHHHHHH
Confidence 1221222368999999999999999887643222111 4567788899999887665543
No 164
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.60 E-value=1.2e-06 Score=92.45 Aligned_cols=178 Identities=19% Similarity=0.182 Sum_probs=108.5
Q ss_pred CCccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHH
Q 003367 77 VSKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAI 156 (826)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 156 (826)
-..++|++..++++..++..... .......|.|+|++|+|||++|+++++.. ... .+.+........
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~~--~~~---~~~~~~~~~~~~------- 94 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYEM--SAN---IKTTAAPMIEKS------- 94 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHHT--TCC---EEEEEGGGCCSH-------
T ss_pred HHHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHHh--CCC---eEEecchhccch-------
Confidence 35699999999999888864311 01234568999999999999999998842 222 233333222111
Q ss_pred HHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCCC------------------CCcEEE
Q 003367 157 LESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGS------------------PESRIL 218 (826)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~------------------~~s~ii 218 (826)
......+.. ..+..+|+||++..-.....+.+...+.... ++..+|
T Consensus 95 --------------~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (338)
T 3pfi_A 95 --------------GDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLI 158 (338)
T ss_dssp --------------HHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEE
T ss_pred --------------hHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEE
Confidence 111111111 2466799999996655555555655554321 124566
Q ss_pred EecccHHH-Hhhc--cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHH
Q 003367 219 VTTRKEDV-AKMM--RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTS 287 (826)
Q Consensus 219 vTtR~~~v-~~~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 287 (826)
.||..... ...+ .....+.+.+++.++..+++...+........ .+..+.|++.+.|.|-.+..+
T Consensus 159 ~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 159 GATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCE----EKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEEC----HHHHHHHHHTTTTCHHHHHHH
T ss_pred EeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHCcCHHHHHHH
Confidence 66654321 1111 12357999999999999999887644332211 456777888999999655443
No 165
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.56 E-value=1.4e-07 Score=90.69 Aligned_cols=46 Identities=30% Similarity=0.435 Sum_probs=39.3
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhccc
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
..++||+++++++.+.+... ..+.+.|+|++|+|||++|+++++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999998653 34568999999999999999999853
No 166
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.55 E-value=3.2e-07 Score=97.77 Aligned_cols=194 Identities=16% Similarity=0.127 Sum_probs=114.2
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCC-cEEEEEeCCCCCHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFD-KRIWVCFSDPVDEIRVAKAI 156 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 156 (826)
..++|+++.++.+..++.... ...+.|+|++|+||||+|+.+++.......+. .++.+..+.......+ .+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTH
T ss_pred HHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHH
Confidence 568999999999999986532 22389999999999999999998532111111 2333444332222222 111
Q ss_pred HHHhccc-chhhhhHHHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccHH-HHhhc-ccc
Q 003367 157 LESFRDV-VSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKED-VAKMM-RTT 233 (826)
Q Consensus 157 ~~~l~~~-~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~~-v~~~~-~~~ 233 (826)
...+... ....... .....-.+++-+|++|++..-.......+...+.......++|++|.... +...+ ...
T Consensus 110 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 110 VKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp HHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred HHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 1111100 0000000 00011123556999999965555566667776665556677777775432 11111 113
Q ss_pred ceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHH
Q 003367 234 SMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTS 287 (826)
Q Consensus 234 ~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 287 (826)
..+.+.+++.++..+.+...+........ .+..+.|++.++|.|..+..+
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQENVKCD----DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHTSSCHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 47889999999999999887643322122 456788999999999865443
No 167
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.49 E-value=2e-07 Score=99.08 Aligned_cols=93 Identities=22% Similarity=0.270 Sum_probs=74.9
Q ss_pred chhhhccCCCCcEEecccccccc-cccccccc-ccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCccc
Q 003367 454 LPSLFDRLTCLRTLCLRCHERHF-CLSIARLP-RNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHAL 531 (826)
Q Consensus 454 ~~~~~~~l~~Lr~L~L~~~~~~~-~~~~~~lp-~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~l 531 (826)
+|. +..+++|++|+|+ + | .+..+| ..|..|.+|++|+|++|.+.+..|..|.+|++|++|+|++|.+. .+
T Consensus 24 ip~-l~~~~~L~~L~l~-----~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~ 95 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIE-----NQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SL 95 (347)
T ss_dssp TTT-SCSCSCCSEEECC-----SCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CC
T ss_pred cCC-CCCCCCeeEEEcc-----CCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-ee
Confidence 577 9999999999998 4 3 555665 67999999999999999955556677899999999999999954 56
Q ss_pred chhhhcccCCCeeeecCcccccC
Q 003367 532 PQGIAKLINLRHLINEGTPLLYL 554 (826)
Q Consensus 532 p~~i~~L~~L~~L~l~~~~l~~l 554 (826)
|..+.....|++|++.+|.+...
T Consensus 96 ~~~~~~~~~L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 96 SWKTVQGLSLQELVLSGNPLHCS 118 (347)
T ss_dssp CSTTTCSCCCCEEECCSSCCCCC
T ss_pred CHHHcccCCceEEEeeCCCccCC
Confidence 65444433499999999988744
No 168
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.47 E-value=1.5e-06 Score=93.09 Aligned_cols=196 Identities=12% Similarity=0.081 Sum_probs=108.6
Q ss_pred CCccccchHHHHH---HHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEe----CCCCCH
Q 003367 77 VSKVRGRDEEKKT---IIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCF----SDPVDE 149 (826)
Q Consensus 77 ~~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~----~~~~~~ 149 (826)
...|+|++..++. +.+.+.... ...+.+.|+|++|+|||++|+++++... ... ..+.+.. +.....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~l~--~~~-~~~~~~~~~~~~~~~~~ 115 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQALG--PDT-PFTAIAGSEIFSLEMSK 115 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHHHC--SSC-CEEEEEGGGGSCSSSCH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHHhc--ccC-Ccccccchhhhhcccch
Confidence 3569999998776 444554432 1346899999999999999999998543 211 1122221 112233
Q ss_pred HHHHHHHHHHhccc----------------------------chh-----hhhHHHHHHHHHHH-h-cCC----ceeEEe
Q 003367 150 IRVAKAILESFRDV----------------------------VSA-----VAAFDTLLRHIEKS-V-KGK----KFLLVL 190 (826)
Q Consensus 150 ~~~~~~i~~~l~~~----------------------------~~~-----~~~~~~~~~~l~~~-l-~~k----~~LlVl 190 (826)
.............. ... .............. . .++ +.+|+|
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~I 195 (368)
T 3uk6_A 116 TEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFI 195 (368)
T ss_dssp HHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEE
T ss_pred hHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEE
Confidence 33333333321100 000 11111111111111 1 233 459999
Q ss_pred ccCCCCChhhHHHHHhhhcCCCCCcEEEEeccc-----------------HHHHhhccccceEEccCCCCchhHHHHHHh
Q 003367 191 DDVWSGNPTKWEELVSTLKFGSPESRILVTTRK-----------------EDVAKMMRTTSMILLAKLPDNDCWSLFSQI 253 (826)
Q Consensus 191 Ddv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~-----------------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 253 (826)
|++..-.......+...+...... .++++|.. +.+... ...+.+.+++.++..+++..+
T Consensus 196 DEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR---~~~i~~~~~~~~e~~~il~~~ 271 (368)
T 3uk6_A 196 DEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDR---LLIVSTTPYSEKDTKQILRIR 271 (368)
T ss_dssp ESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTT---EEEEEECCCCHHHHHHHHHHH
T ss_pred hhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhh---ccEEEecCCCHHHHHHHHHHH
Confidence 999666666666677666554433 34444421 122222 245799999999999999887
Q ss_pred hhcCCCcccchhhHHHHHHHHHhcC-CCchhHHHH
Q 003367 254 AFSGRTTEECQKLTDIGRMIADKCN-GLPLAAKTS 287 (826)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~i~~~~~-glPLal~~~ 287 (826)
+........ .+..+.|++.+. |.|-.+..+
T Consensus 272 ~~~~~~~~~----~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 272 CEEEDVEMS----EDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp HHHTTCCBC----HHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHcCCCCC----HHHHHHHHHHhcCCCHHHHHHH
Confidence 654332222 456677888887 777654443
No 169
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.42 E-value=1.6e-08 Score=108.07 Aligned_cols=90 Identities=14% Similarity=0.038 Sum_probs=40.6
Q ss_pred CCCcEEecccccccccccccccccccc-CCCCccEEEccCCCCccc-cchhhcCCCCCcEEeccCCCCCcccchhhh---
Q 003367 462 TCLRTLCLRCHERHFCLSIARLPRNIK-KLKHLRYLNLSNNDAIYE-LPEALCDLCNLQTLDVSNCGNLHALPQGIA--- 536 (826)
Q Consensus 462 ~~Lr~L~L~~~~~~~~~~~~~lp~~i~-~l~~L~~L~Ls~~~~~~~-lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~--- 536 (826)
+.|+.|+|++|.+... ....+...+. ...+|++|+|++|.+... +......+.+|+.|+|++|.+...-...+.
T Consensus 72 ~~L~~L~Ls~n~l~~~-~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPV-KCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHH-HHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHH-HHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4566666664433211 1112222222 224666666666652221 111122344566666666654332222221
Q ss_pred --cccCCCeeeecCcccc
Q 003367 537 --KLINLRHLINEGTPLL 552 (826)
Q Consensus 537 --~L~~L~~L~l~~~~l~ 552 (826)
..++|++|++++|.+.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~ 168 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLT 168 (372)
T ss_dssp HSTTCCCCEEECCSSCCH
T ss_pred HhcCCccceeeCCCCCCC
Confidence 2355666666666554
No 170
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.42 E-value=3.2e-06 Score=86.86 Aligned_cols=185 Identities=16% Similarity=0.121 Sum_probs=100.9
Q ss_pred CCccccchHHHHHHHHHHcCCCCC-------CCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCH
Q 003367 77 VSKVRGRDEEKKTIIDLLLGSSSQ-------EKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDE 149 (826)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 149 (826)
-.+++|.++.++++.+.+...-.. +-...+.+.|+|++|+|||++|+++++.. ... .+.+..+.-..
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~--~~~---~~~v~~~~~~~- 89 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET--NAT---FIRVVGSELVK- 89 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT--TCE---EEEEEGGGGCC-
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh--CCC---EEEEehHHHHH-
Confidence 356999999999998877431000 01234569999999999999999999843 222 22333221100
Q ss_pred HHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCC-----------ChhhHHHH---Hhhhc--CCCC
Q 003367 150 IRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSG-----------NPTKWEEL---VSTLK--FGSP 213 (826)
Q Consensus 150 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~l---~~~~~--~~~~ 213 (826)
... ......+...+.......+.+|+||+++.- +......+ ...+. ....
T Consensus 90 -------------~~~-~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 155 (285)
T 3h4m_A 90 -------------KFI-GEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARG 155 (285)
T ss_dssp -------------CST-THHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSS
T ss_pred -------------hcc-chHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 000 000111222233333456789999999321 11111222 22222 2234
Q ss_pred CcEEEEecccHHHHh-----hccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCC-CchhHHH
Q 003367 214 ESRILVTTRKEDVAK-----MMRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNG-LPLAAKT 286 (826)
Q Consensus 214 ~s~iivTtR~~~v~~-----~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g-lPLal~~ 286 (826)
+..||.||....... .......+.+...+.++..+++...+..... ..... ...+++.+.| .|-.+..
T Consensus 156 ~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 156 DVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHHHH
T ss_pred CEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHHHH
Confidence 567788887543221 1122347889999999999999887643221 11112 3457777776 4434443
No 171
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.41 E-value=1.4e-06 Score=95.03 Aligned_cols=181 Identities=14% Similarity=0.128 Sum_probs=103.8
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCC--CcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHF--DKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVK 182 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 182 (826)
...+.|+|++|+||||||+++++.. ...+ ..+++++.. .+...+...+.... ...+.+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l--~~~~~~~~v~~v~~~------~~~~~~~~~~~~~~---------~~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV--VQNEPDLRVMYITSE------KFLNDLVDSMKEGK---------LNEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH--HHHCCSSCEEEEEHH------HHHHHHHHHHHTTC---------HHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHhCCCCeEEEeeHH------HHHHHHHHHHHccc---------HHHHHHHhc
Confidence 5679999999999999999999843 2222 234455432 23344444332210 112233333
Q ss_pred CCceeEEeccCCCCCh--hhHHHHHhhhcC-CCCCcEEEEecccH---------HHHhhccccceEEccCCCCchhHHHH
Q 003367 183 GKKFLLVLDDVWSGNP--TKWEELVSTLKF-GSPESRILVTTRKE---------DVAKMMRTTSMILLAKLPDNDCWSLF 250 (826)
Q Consensus 183 ~k~~LlVlDdv~~~~~--~~~~~l~~~~~~-~~~~s~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 250 (826)
.+.-+|++||++.... ...+.+...+.. ...|..||+||... .+...+.....+.+.+++.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 3678999999954322 233344444322 23467788888752 12222333357889999999999999
Q ss_pred HHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHHhhh------hcCC-cCHHHHHHhhhh
Q 003367 251 SQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTSGSL------LSLK-TTMEQWKTVLDS 306 (826)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~------l~~~-~~~~~w~~~~~~ 306 (826)
.+.+.......+ .++.+.|++.++|.+-.+..+... ..+. -+.+.++.++..
T Consensus 273 ~~~~~~~~~~i~----~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~ 331 (440)
T 2z4s_A 273 RKMLEIEHGELP----EEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKD 331 (440)
T ss_dssp HHHHHHHTCCCC----TTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTST
T ss_pred HHHHHHcCCCCC----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 887643221111 244667888999988654332211 1122 255666666654
No 172
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.39 E-value=6.8e-06 Score=83.18 Aligned_cols=183 Identities=16% Similarity=0.166 Sum_probs=99.4
Q ss_pred CCccccchHHHHHHHHHHc---CCCC---CCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHH
Q 003367 77 VSKVRGRDEEKKTIIDLLL---GSSS---QEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEI 150 (826)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 150 (826)
-.+++|.++.++.+.+++. .... -+....+.|.|+|++|+|||++|+++++.. .. ..+.+..+.-.+.
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~--~~---~~~~~~~~~~~~~- 78 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA--QV---PFLAMAGAEFVEV- 78 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH--TC---CEEEEETTTTSSS-
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh--CC---CEEEechHHHHhh-
Confidence 3568999988887766542 2110 011244678899999999999999999843 22 2344444432110
Q ss_pred HHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCC------------Ch---hhHHHHHhhhcC--CCC
Q 003367 151 RVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSG------------NP---TKWEELVSTLKF--GSP 213 (826)
Q Consensus 151 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~------------~~---~~~~~l~~~~~~--~~~ 213 (826)
... .....+...+.......+.+|++|+++.- .. .....+...+.. ...
T Consensus 79 ---------~~~-----~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 79 ---------IGG-----LGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp ---------STT-----HHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred ---------ccC-----hhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 000 01112222333333456789999999532 01 112233333332 123
Q ss_pred CcEEEEecccHHHHh-h-c---cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCch
Q 003367 214 ESRILVTTRKEDVAK-M-M---RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPL 282 (826)
Q Consensus 214 ~s~iivTtR~~~v~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPL 282 (826)
+..||.||....... . . .....+.+...+.++..+++...+........ .......+++.+.|.+-
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~---~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQS---STFYSQRLAELTPGFSG 215 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBT---HHHHHHHHHHTCTTCCH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcc---hhhHHHHHHHHCCCCCH
Confidence 456677776543211 1 1 12357788899999999999887643322111 12234678888888764
No 173
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.39 E-value=1.7e-06 Score=92.05 Aligned_cols=195 Identities=15% Similarity=0.133 Sum_probs=107.1
Q ss_pred CccccchHHHHHHHHHH-cCCCCCCCCCccEEEEEecCCCcHHHHHHHHhccccccc----CCCc---------------
Q 003367 78 SKVRGRDEEKKTIIDLL-LGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDA----HFDK--------------- 137 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~--------------- 137 (826)
.+++|.+...+.+..++ ... .... +.|+|+.|+||||+|+.++....... .++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~-----~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR-----DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT-----CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred HHhcCCHHHHHHHHHHHhhCC-----CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 46899999999888877 332 1233 89999999999999999987321000 0110
Q ss_pred -----EEEEEeCCCC-CHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCC
Q 003367 138 -----RIWVCFSDPV-DEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFG 211 (826)
Q Consensus 138 -----~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~ 211 (826)
.+.+..+... .......++++.+..... ..... .+. .+.+++-++|+|++..-+....+.+...+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ----VDFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhcc----ccccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 1111111000 000011112221111000 00000 000 02346679999999776666667777776655
Q ss_pred CCCcEEEEecccHH-HHhhc-cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHH
Q 003367 212 SPESRILVTTRKED-VAKMM-RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTS 287 (826)
Q Consensus 212 ~~~s~iivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 287 (826)
..+..+|++|.... +...+ .....+++.+++.++..+.+...+...+...+. .+..+.|++.++|.+-.+..+
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET---KDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC---SHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHcCCCHHHHHHH
Confidence 56777887776532 21111 223678999999999999998876432221110 245677889999988755443
No 174
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.38 E-value=3.3e-06 Score=91.73 Aligned_cols=177 Identities=19% Similarity=0.237 Sum_probs=101.6
Q ss_pred CccccchHHH---HHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCC-CCHHHHH
Q 003367 78 SKVRGRDEEK---KTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDP-VDEIRVA 153 (826)
Q Consensus 78 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~ 153 (826)
..++|.+..+ +.+...+... ....+.|+|++|+||||+|+.+++.. ... ++.++.. .....+
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~~--~~~-----f~~l~a~~~~~~~i- 91 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARYA--NAD-----VERISAVTSGVKEI- 91 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHHT--TCE-----EEEEETTTCCHHHH-
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHHh--CCC-----eEEEEeccCCHHHH-
Confidence 5689999888 6777777543 34679999999999999999999843 222 2222221 122111
Q ss_pred HHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEE-ecccHH--HH-hh
Q 003367 154 KAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILV-TTRKED--VA-KM 229 (826)
Q Consensus 154 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iiv-TtR~~~--v~-~~ 229 (826)
..++.. .......+++.+|++|+++.-.....+.+...+..+ ...+|. ||.+.. +. ..
T Consensus 92 r~~~~~----------------a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 92 REAIER----------------ARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSAL 153 (447)
T ss_dssp HHHHHH----------------HHHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHH
T ss_pred HHHHHH----------------HHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHH
Confidence 111111 001112467889999999765555555566555542 234443 544432 11 11
Q ss_pred ccccceEEccCCCCchhHHHHHHhhhcCCCc---ccchhhHHHHHHHHHhcCCCchhHHH
Q 003367 230 MRTTSMILLAKLPDNDCWSLFSQIAFSGRTT---EECQKLTDIGRMIADKCNGLPLAAKT 286 (826)
Q Consensus 230 ~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~---~~~~~~~~~~~~i~~~~~glPLal~~ 286 (826)
......+.+.+++.++..+++.+.+...... ....-..+..+.|++.++|.+-.+..
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln 213 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALN 213 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHH
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHH
Confidence 2224578899999999999988876431110 01111245677788889998865443
No 175
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.37 E-value=1.8e-08 Score=107.49 Aligned_cols=166 Identities=16% Similarity=0.046 Sum_probs=97.1
Q ss_pred CCCccEEEccCCCCccccchh----hc-CCCCCcEEeccCCCCCcccchhh-hcccCCCeeeecCcccccCC-----ccC
Q 003367 490 LKHLRYLNLSNNDAIYELPEA----LC-DLCNLQTLDVSNCGNLHALPQGI-AKLINLRHLINEGTPLLYLP-----KGL 558 (826)
Q Consensus 490 l~~L~~L~Ls~~~~~~~lp~~----i~-~L~~L~~L~L~~~~~~~~lp~~i-~~L~~L~~L~l~~~~l~~lp-----~~i 558 (826)
+.+|++|+|++|.+...-... +. ...+|+.|+|++|.+...-...+ ..+++|++|++++|.+.... ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 468999999999843322222 33 23799999999998544333333 45778999999999886321 112
Q ss_pred -CCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhhhhccCCCcCCceeeEeecCCCccc
Q 003367 559 -ERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKSAKLESKKHLVCLRLEFIKLGRVEL 637 (826)
Q Consensus 559 -~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~ 637 (826)
...++|++|++.+|..... ........+..+++|+.|++++|.++...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~------------------------------~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g- 199 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAA------------------------------GVAVLMEGLAGNTSVTHLSLLHTGLGDEG- 199 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHH------------------------------HHHHHHHHHHTCSSCCEEECTTSSCHHHH-
T ss_pred HhcCCccceeeCCCCCCChH------------------------------HHHHHHHHHhcCCCcCEEeCCCCCCCcHH-
Confidence 2456677777665543100 00111223345566777777766643221
Q ss_pred ccchHHHhhcCCCCCCcCeEEEeccCCCCCC----CCcccCccCCcEEEEecCCCC
Q 003367 638 VDKDNEVLEALQPSPDLEKLTICDYKSKIIS----PSWLMSLTELRMLNLQRCGKC 689 (826)
Q Consensus 638 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~----p~~l~~l~~L~~L~L~~~~~~ 689 (826)
...+...+..+++|++|+|++|.+.... +..+...++|++|+|++|.+.
T Consensus 200 ---~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 200 ---LELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp ---HHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred ---HHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 1223444555667777777777765421 222334567777777777654
No 176
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.36 E-value=2.1e-06 Score=90.00 Aligned_cols=177 Identities=18% Similarity=0.168 Sum_probs=104.2
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
.+++|.++.++.+..++.... ...++.+.|++|+|||++|+++++... ..++.++.+.. ... .....+
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~l~-----~~~~~i~~~~~-~~~-~i~~~~ 93 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHDVN-----ADMMFVNGSDC-KID-FVRGPL 93 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHHTT-----EEEEEEETTTC-CHH-HHHTHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHHhC-----CCEEEEccccc-CHH-HHHHHH
Confidence 569999999999999997432 346788889999999999999998431 12344554332 121 111111
Q ss_pred HHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCC-hhhHHHHHhhhcCCCCCcEEEEecccHH-HHhhc-cccc
Q 003367 158 ESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGN-PTKWEELVSTLKFGSPESRILVTTRKED-VAKMM-RTTS 234 (826)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-~~~~~~l~~~~~~~~~~s~iivTtR~~~-v~~~~-~~~~ 234 (826)
..+... ....+++.+||+||++.-. ....+.+...+.....+.++|+||.... +...+ ....
T Consensus 94 ~~~~~~---------------~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~ 158 (324)
T 3u61_B 94 TNFASA---------------ASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCR 158 (324)
T ss_dssp HHHHHB---------------CCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSE
T ss_pred HHHHhh---------------cccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCc
Confidence 111000 0012477899999996544 4455666666554445678888887643 11111 1124
Q ss_pred eEEccCCCCchhHHH-------HHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhH
Q 003367 235 MILLAKLPDNDCWSL-------FSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAA 284 (826)
Q Consensus 235 ~~~l~~L~~~~~~~l-------f~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal 284 (826)
.+++.+++.++-.++ +...+........+ .+..+.|++.++|.+-.+
T Consensus 159 ~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 159 VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD---MKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC---HHHHHHHHHHTCSCTTHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHhCCCCHHHH
Confidence 788999998874333 22222211111111 266777888898877643
No 177
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.36 E-value=1.6e-06 Score=96.78 Aligned_cols=195 Identities=17% Similarity=0.185 Sum_probs=109.4
Q ss_pred CccccchHHHHHHHHHHcCCCC-----------CCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCC
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSS-----------QEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDP 146 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~-----------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 146 (826)
.+++|+++.++++.+++..... .+....+.+.|+|++|+||||+|+++++... + .++.++++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEEeCCCc
Confidence 5699999999999999875110 0112357899999999999999999998431 1 2344555544
Q ss_pred CCHHHHHHHHHHHhcccchhhhhHHHHHHHHHH--HhcCCceeEEeccCCCCCh---hhHHHHHhhhcCCCCCcEEEEec
Q 003367 147 VDEIRVAKAILESFRDVVSAVAAFDTLLRHIEK--SVKGKKFLLVLDDVWSGNP---TKWEELVSTLKFGSPESRILVTT 221 (826)
Q Consensus 147 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~--~l~~k~~LlVlDdv~~~~~---~~~~~l~~~~~~~~~~s~iivTt 221 (826)
.... +....+........ .........+ ...+++.+||+|+++.-.. ..+..+...+... +..||+++
T Consensus 114 ~~~~-~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~ 186 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNMS----VVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILIC 186 (516)
T ss_dssp CCHH-HHHHTGGGGTTBCC----STTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEE
T ss_pred chHH-HHHHHHHHHhcccc----HHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEE
Confidence 4432 22222211111000 0000000000 1235788999999954322 2234454444332 33455555
Q ss_pred ccHH---HHhhccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCc-hhHHHHh
Q 003367 222 RKED---VAKMMRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLP-LAAKTSG 288 (826)
Q Consensus 222 R~~~---v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glP-Lal~~~~ 288 (826)
.... +.........+.+.+++.++..+++...+........ .+..+.|++.++|.+ -|+..+.
T Consensus 187 ~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~----~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 187 NERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD----PNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp SCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC----TTHHHHHHHHTTTCHHHHHHHHT
T ss_pred cCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHHH
Confidence 4322 2222222457899999999999988877654332222 234667889999944 4555543
No 178
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.33 E-value=1.9e-06 Score=82.16 Aligned_cols=46 Identities=30% Similarity=0.395 Sum_probs=39.1
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhccc
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
..++||+++++.+.+.+... ..+.|.|+|++|+||||+|+++++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999998653 34567899999999999999999853
No 179
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.33 E-value=4.2e-06 Score=87.13 Aligned_cols=162 Identities=12% Similarity=0.115 Sum_probs=92.9
Q ss_pred ccccchHHHHHHHHHHcCCC---------CCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCH
Q 003367 79 KVRGRDEEKKTIIDLLLGSS---------SQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDE 149 (826)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~~---------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 149 (826)
.++|.++.++.+.+++.... -........|.|+|++|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 48899999888877654210 000124457899999999999999999875422222211122333210
Q ss_pred HHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCC---------ChhhHHHHHhhhcCCCCCcEEEEe
Q 003367 150 IRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSG---------NPTKWEELVSTLKFGSPESRILVT 220 (826)
Q Consensus 150 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---------~~~~~~~l~~~~~~~~~~s~iivT 220 (826)
.+...... .........+... +.-+|++|+++.- .......+...+.....+..||.|
T Consensus 109 ---------~l~~~~~g-~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ---------DLVGQYIG-HTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ---------GTCCSSTT-CHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ---------Hhhhhccc-ccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 01000000 0011122222222 3469999999522 445556666666666667788888
Q ss_pred cccHHHHhh------c--cccceEEccCCCCchhHHHHHHhhhc
Q 003367 221 TRKEDVAKM------M--RTTSMILLAKLPDNDCWSLFSQIAFS 256 (826)
Q Consensus 221 tR~~~v~~~------~--~~~~~~~l~~L~~~~~~~lf~~~a~~ 256 (826)
|........ + .....+.+.+++.++..+++...+..
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 865432110 0 11367899999999999999887654
No 180
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.32 E-value=6e-06 Score=86.53 Aligned_cols=170 Identities=15% Similarity=0.111 Sum_probs=93.8
Q ss_pred HHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccch
Q 003367 86 EKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVS 165 (826)
Q Consensus 86 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 165 (826)
....+..+...+. .....+.|+|++|+||||||+.+++..... -..++++++ ..+...+...+...
T Consensus 22 a~~~~~~~~~~~~----~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~------~~~~~~~~~~~~~~-- 87 (324)
T 1l8q_A 22 AYEVVKEALENLG----SLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSA------DDFAQAMVEHLKKG-- 87 (324)
T ss_dssp HHHHHHHHHHTTT----TSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEH------HHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHhCcC----CCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEH------HHHHHHHHHHHHcC--
Confidence 3444555554432 134568999999999999999999844211 123455543 23333333333211
Q ss_pred hhhhHHHHHHHHHHHhcCCceeEEeccCCCCCh--hhHHHHHhhhcC-CCCCcEEEEecccH---------HHHhhcccc
Q 003367 166 AVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNP--TKWEELVSTLKF-GSPESRILVTTRKE---------DVAKMMRTT 233 (826)
Q Consensus 166 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--~~~~~l~~~~~~-~~~~s~iivTtR~~---------~v~~~~~~~ 233 (826)
.... +.+.+ .+..+|++||+..-.. ...+.+...+.. ...+..||+|+... .+...+...
T Consensus 88 ---~~~~----~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~ 159 (324)
T 1l8q_A 88 ---TINE----FRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGG 159 (324)
T ss_dssp ---CHHH----HHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTS
T ss_pred ---cHHH----HHHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCc
Confidence 1111 12222 2367999999954222 222334333321 12455788877532 122222223
Q ss_pred ceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchh
Q 003367 234 SMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLA 283 (826)
Q Consensus 234 ~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLa 283 (826)
..+++.+ +.++..+++...+........ .++.+.|++.+ |..-.
T Consensus 160 ~~i~l~~-~~~e~~~il~~~~~~~~~~l~----~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 160 ILVEIEL-DNKTRFKIIKEKLKEFNLELR----KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp EEEECCC-CHHHHHHHHHHHHHHTTCCCC----HHHHHHHHHHC-SSHHH
T ss_pred eEEEeCC-CHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHhC-CCHHH
Confidence 5789999 999999999887653322222 45567788888 76643
No 181
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.31 E-value=1.4e-05 Score=83.81 Aligned_cols=172 Identities=15% Similarity=0.092 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhccccccc--------------------CCCcEEEEEe
Q 003367 84 DEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDA--------------------HFDKRIWVCF 143 (826)
Q Consensus 84 ~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~~ 143 (826)
++..+.+...+... .-...+.++|+.|+||||+|+.+++...... +++ ..++..
T Consensus 8 ~~~~~~l~~~i~~~-----~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-----RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTT-----CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECC
T ss_pred HHHHHHHHHHHHcC-----CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEec
Confidence 45566777777543 2346799999999999999999987532111 112 222222
Q ss_pred CCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHH----hcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEE
Q 003367 144 SDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKS----VKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILV 219 (826)
Q Consensus 144 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iiv 219 (826)
... ......+++.+.+... ..+++-++|+|+++.-+....+.+...+.....+..+|+
T Consensus 82 ~~~------------------~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il 143 (334)
T 1a5t_A 82 EKG------------------KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFL 143 (334)
T ss_dssp CTT------------------CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEE
T ss_pred ccc------------------CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEE
Confidence 100 0011122222211111 135678999999966566667778888876666777777
Q ss_pred ecccHH-HHhhc-cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHHh
Q 003367 220 TTRKED-VAKMM-RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTSG 288 (826)
Q Consensus 220 TtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~ 288 (826)
+|.... +...+ .....+.+.+++.++..+.+.... . .+ .+.+..+++.++|.|..+..+.
T Consensus 144 ~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---~--~~----~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 144 ATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV---T--MS----QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp EESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---C--CC----HHHHHHHHHHTTTCHHHHHHTT
T ss_pred EeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---C--CC----HHHHHHHHHHcCCCHHHHHHHh
Confidence 776543 22222 224579999999999999888764 1 11 3455779999999998665543
No 182
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.30 E-value=1.6e-05 Score=85.89 Aligned_cols=127 Identities=15% Similarity=0.128 Sum_probs=77.0
Q ss_pred CCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCCCCCCCCccceeeccccccceEeCcccccCCCCcc
Q 003367 648 LQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLPSLGRLPSLESLVVEALSSVRRVGNEFLGIESDDI 727 (826)
Q Consensus 648 l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 727 (826)
+..+..|+.+.+..+.. .+....+..+..|+.+.+....+. -..+..+.+|+.+.+.. .++.++...
T Consensus 249 f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~--~i~~I~~~a-------- 315 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLD--SVKFIGEEA-------- 315 (394)
T ss_dssp TTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECT--TCCEECTTT--------
T ss_pred ccccccceeEEcCCCcc-eeeccccccccccceeccCceeec--ccccccccccccccccc--ccceechhh--------
Confidence 34556677777765432 232555666777777766543211 11456677777777752 244444332
Q ss_pred ccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCCCCCCCCCC-CCcccCCcceEEEccc
Q 003367 728 SLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKLKALPD-HLLLTTKMNELTMNWC 801 (826)
Q Consensus 728 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c 801 (826)
+..+.+|+.+.+.+. ++.+. ...+..+.+|+.++|..+ ++.++. .+..+++|+.+++...
T Consensus 316 -----F~~c~~L~~i~lp~~--v~~I~-----~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 316 -----FESCTSLVSIDLPYL--VEEIG-----KRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp -----TTTCTTCCEECCCTT--CCEEC-----TTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG
T ss_pred -----hcCCCCCCEEEeCCc--ccEEh-----HHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC
Confidence 235778888888542 44432 245667888999888763 666665 4567888999988643
No 183
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.28 E-value=1.1e-06 Score=79.79 Aligned_cols=114 Identities=18% Similarity=0.074 Sum_probs=70.5
Q ss_pred ccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHH
Q 003367 79 KVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILE 158 (826)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 158 (826)
.++|++..++++.+.+..... ...-|.|+|..|+|||++|+.+++.... .. ...+ +++....+..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~~-~~-~~~v-~~~~~~~~~~-------- 66 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGRN-AQ-GEFV-YRELTPDNAP-------- 66 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSSTT-TT-SCCE-EEECCTTTSS--------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCCc-cC-CCEE-EECCCCCcch--------
Confidence 578999999999888754322 1234789999999999999999984321 11 1223 6655433220
Q ss_pred HhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEeccc
Q 003367 159 SFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRK 223 (826)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~ 223 (826)
... ..+.. ...-.|+||++..-.......+...+.......++|.||..
T Consensus 67 ----------~~~---~~~~~---a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 67 ----------QLN---DFIAL---AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ----------CHH---HHHHH---HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ----------hhh---cHHHH---cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 000 01111 13357899999766666666677776555556678877764
No 184
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.27 E-value=8.5e-06 Score=85.96 Aligned_cols=178 Identities=14% Similarity=0.154 Sum_probs=106.5
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCC-cEEEEEeCCCCCHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFD-KRIWVCFSDPVDEIRVAKAI 156 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 156 (826)
..++|.+..++.+...+... ....+.++|+.|+||||+|+.+++.... ..+. .+..++.+.......+. .+
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~~~~~~~~~~~~~ir-~~ 96 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIYG-KNYSNMVLELNASDDRGIDVVR-NQ 96 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHHT-TSHHHHEEEECTTSCCSHHHHH-TH
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHcC-CCccceEEEEcCcccccHHHHH-HH
Confidence 45789999999998888653 2233899999999999999999984321 1111 12223332222221111 11
Q ss_pred HHHhcccchhhhhHHHHHHHHHHH---hcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccHH-HHhhc-c
Q 003367 157 LESFRDVVSAVAAFDTLLRHIEKS---VKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKED-VAKMM-R 231 (826)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~~l~~~---l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~~-v~~~~-~ 231 (826)
...+.+. +.+.+-++|+|+++.-.....+.+...+.......++|++|.... +...+ .
T Consensus 97 -----------------i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~s 159 (340)
T 1sxj_C 97 -----------------IKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLS 159 (340)
T ss_dssp -----------------HHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred -----------------HHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHh
Confidence 1111110 123467899999965555566667766665556677777765432 11111 1
Q ss_pred ccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhH
Q 003367 232 TTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAA 284 (826)
Q Consensus 232 ~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal 284 (826)
....+.+.+++.++..+.+...+-....... .+..+.|++.++|.+--+
T Consensus 160 R~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~----~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 160 QCTRFRFQPLPQEAIERRIANVLVHEKLKLS----PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHTTTCCBC----HHHHHHHHHHHTTCHHHH
T ss_pred hceeEeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 2347889999999988888776532222111 345677888899887643
No 185
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.26 E-value=1.2e-07 Score=100.23 Aligned_cols=144 Identities=22% Similarity=0.264 Sum_probs=89.1
Q ss_pred cCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCC-CCC--CCCCccceeeccccccceEeCcccccCC
Q 003367 647 ALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQL-PSL--GRLPSLESLVVEALSSVRRVGNEFLGIE 723 (826)
Q Consensus 647 ~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l-~~l--~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 723 (826)
.+..+|+|+.|.|++|....+ +. + .+++|++|+|..|.+.... ..+ ..+|+|+.|+|+.......-...+....
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l-~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSI-GK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBC-CS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHhcCCCCcEEEEeCCCCcee-cc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 345678999999998854444 33 3 3889999999988764321 122 3689999999863211100000010100
Q ss_pred CCccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCCCCCCC-----CCCCCcccCCcceEEE
Q 003367 724 SDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKLKA-----LPDHLLLTTKMNELTM 798 (826)
Q Consensus 724 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-----lp~~l~~l~~L~~L~l 798 (826)
+ ......||+|++|.|.+|.........+. ....+|+|++|+|+.|. ++. ++.++.++++|+.|++
T Consensus 244 ~-----~l~~~~~p~Lr~L~L~~~~i~~~~~~~la---~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L 314 (362)
T 2ra8_A 244 P-----LFSKDRFPNLKWLGIVDAEEQNVVVEMFL---ESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINM 314 (362)
T ss_dssp G-----GSCTTTCTTCCEEEEESCTTHHHHHHHHH---HCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred H-----HHhcCCCCCcCEEeCCCCCCchHHHHHHH---hCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEEC
Confidence 0 00113689999999998853322211111 12368999999998854 553 5666677899999999
Q ss_pred cccc
Q 003367 799 NWCS 802 (826)
Q Consensus 799 ~~c~ 802 (826)
++|.
T Consensus 315 ~~n~ 318 (362)
T 2ra8_A 315 KYNY 318 (362)
T ss_dssp CSBB
T ss_pred CCCc
Confidence 9886
No 186
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.25 E-value=1.2e-05 Score=81.81 Aligned_cols=172 Identities=19% Similarity=0.222 Sum_probs=92.5
Q ss_pred CccccchHHHHHHHH-------HHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHH
Q 003367 78 SKVRGRDEEKKTIID-------LLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEI 150 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~-------~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 150 (826)
..++|.+...+++.. .+... .....+.|.|+|++|+|||++|+++++.. ... .+.+..+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~---~~~~~~~vLl~G~~GtGKT~la~~ia~~~--~~~---~~~i~~~~~---- 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAEES--NFP---FIKICSPDK---- 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHC---SSCSEEEEEEECSTTSSHHHHHHHHHHHH--TCS---EEEEECGGG----
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhcc---CCCCCeEEEEECCCCCcHHHHHHHHHHHh--CCC---EEEEeCHHH----
Confidence 457888877666665 33211 12355789999999999999999999842 222 222332210
Q ss_pred HHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCC----------ChhhHHHHHhhhcC---CCCCcEE
Q 003367 151 RVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSG----------NPTKWEELVSTLKF---GSPESRI 217 (826)
Q Consensus 151 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------~~~~~~~l~~~~~~---~~~~s~i 217 (826)
+.+. ........+...+......+..+|+||++..- .....+.+...+.. ......|
T Consensus 101 ---------~~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 101 ---------MIGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp ---------CTTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred ---------hcCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 1110 00111122233333344567889999998321 11112333333332 2233456
Q ss_pred EEecccHHHHhh--c-cc-cceEEccCCCC-chhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCC
Q 003367 218 LVTTRKEDVAKM--M-RT-TSMILLAKLPD-NDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGL 280 (826)
Q Consensus 218 ivTtR~~~v~~~--~-~~-~~~~~l~~L~~-~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~gl 280 (826)
|.||........ . .. ...+.+.+++. ++..+++.... . .. .+....|++.+.|.
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~--~~----~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---N--FK----DKERTTIAQQVKGK 229 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---C--SC----HHHHHHHHHHHTTS
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---C--CC----HHHHHHHHHHhcCC
Confidence 777777654332 1 11 45688888888 55555555421 1 11 34566788888874
No 187
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.21 E-value=2.1e-05 Score=82.10 Aligned_cols=188 Identities=14% Similarity=0.082 Sum_probs=104.4
Q ss_pred CCccccchHHHHHHHHHHcCC------CCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHH
Q 003367 77 VSKVRGRDEEKKTIIDLLLGS------SSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEI 150 (826)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 150 (826)
-.+++|.++.++.|.+.+... -.......+-|.|+|++|+|||+||+++++.. ... .+.++.+
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~--~~~---~~~v~~~------ 85 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA--NST---FFSVSSS------ 85 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH--TCE---EEEEEHH------
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH--CCC---EEEEchH------
Confidence 356899999999998877210 00012235679999999999999999999842 222 2233321
Q ss_pred HHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCCh-----------hhHHHHHhhhc---CCCCCcE
Q 003367 151 RVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNP-----------TKWEELVSTLK---FGSPESR 216 (826)
Q Consensus 151 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-----------~~~~~l~~~~~---~~~~~s~ 216 (826)
. +.....+ .....+...+......++.+|+||++..-.. .....+...+. ....+..
T Consensus 86 ~----l~~~~~g-----~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 156 (322)
T 3eie_A 86 D----LVSKWMG-----ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 156 (322)
T ss_dssp H----HHTTTGG-----GHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEE
T ss_pred H----Hhhcccc-----hHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceE
Confidence 1 1111111 0011122222222345678999999942110 11233333333 2344556
Q ss_pred EEEecccHHHHhh-c--cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCC-chhHHHHh
Q 003367 217 ILVTTRKEDVAKM-M--RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGL-PLAAKTSG 288 (826)
Q Consensus 217 iivTtR~~~v~~~-~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~gl-PLal~~~~ 288 (826)
||.||........ + .....+.+...+.++-.+++..++........ ......|++.+.|. +-.|..+.
T Consensus 157 vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 157 VLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT----KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC----HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred EEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 6667765432110 0 22356788888889999999887643322111 33456788888874 44455444
No 188
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.21 E-value=1.4e-05 Score=86.25 Aligned_cols=121 Identities=14% Similarity=0.094 Sum_probs=80.4
Q ss_pred cCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC--CCCCCCccceeeccccccceEeCcccccCCC
Q 003367 647 ALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP--SLGRLPSLESLVVEALSSVRRVGNEFLGIES 724 (826)
Q Consensus 647 ~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 724 (826)
.+..+..++.+...... +....+..+.+|+.+.+..+ + ..++ .+.++.+|+.+.|.. .++.++...
T Consensus 271 ~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i-~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~a----- 338 (394)
T 4fs7_A 271 LFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-V-KFIGEEAFESCTSLVSIDLPY--LVEEIGKRS----- 338 (394)
T ss_dssp TTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-C-CEECTTTTTTCTTCCEECCCT--TCCEECTTT-----
T ss_pred ccccccccceeccCcee---eccccccccccccccccccc-c-ceechhhhcCCCCCCEEEeCC--cccEEhHHh-----
Confidence 35566778887776543 22445778899999999765 2 3343 688889999998852 355554432
Q ss_pred CccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCCCCCCCCCCCCcccCCcceE
Q 003367 725 DDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKLKALPDHLLLTTKMNEL 796 (826)
Q Consensus 725 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L 796 (826)
+.++.+|+.+.+..+ +..+. ...+..+++|+.++|..+ ++.+...+..+++|+.+
T Consensus 339 --------F~~c~~L~~i~lp~~--l~~I~-----~~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 339 --------FRGCTSLSNINFPLS--LRKIG-----ANAFQGCINLKKVELPKR--LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp --------TTTCTTCCEECCCTT--CCEEC-----TTTBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEEEE
T ss_pred --------ccCCCCCCEEEECcc--ccEeh-----HHHhhCCCCCCEEEECCC--CEEhhheecCCCCCcEE
Confidence 236788999988653 44443 356778899999999763 45555556666666654
No 189
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.21 E-value=8.2e-07 Score=93.82 Aligned_cols=90 Identities=14% Similarity=0.122 Sum_probs=45.3
Q ss_pred hhhhccCCCCcEEecccccccccc----ccccccccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcc
Q 003367 455 PSLFDRLTCLRTLCLRCHERHFCL----SIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHA 530 (826)
Q Consensus 455 ~~~~~~l~~Lr~L~L~~~~~~~~~----~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~ 530 (826)
..+..++++|+.|.+..+....+. ....++..+..+++|+.|+|++|.. ..+|. +. +++|++|++..|.+...
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~-l~l~~-~~-~~~L~~L~L~~~~l~~~ 208 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN-LSIGK-KP-RPNLKSLEIISGGLPDS 208 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT-CBCCS-CB-CTTCSEEEEECSBCCHH
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC-ceecc-cc-CCCCcEEEEecCCCChH
Confidence 345667888999988633211110 0112333445566677777666531 23333 32 56666666665553322
Q ss_pred cchhhh--cccCCCeeeec
Q 003367 531 LPQGIA--KLINLRHLINE 547 (826)
Q Consensus 531 lp~~i~--~L~~L~~L~l~ 547 (826)
....+. .+++|++|+|+
T Consensus 209 ~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 209 VVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHHHHSBCTTCCEEEEE
T ss_pred HHHHHHHccCCCCcEEEEe
Confidence 222232 45566666553
No 190
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.18 E-value=1.8e-05 Score=83.87 Aligned_cols=188 Identities=10% Similarity=0.071 Sum_probs=102.3
Q ss_pred CccccchHHHHHHHHHHcCC----CC--CCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGS----SS--QEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIR 151 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 151 (826)
.+++|.+..++.+.+.+... .. ......+.|.|+|++|+|||++|+++++.. .. ..+.++++.-...
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~--~~---~~~~i~~~~l~~~-- 156 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS--GA---TFFSISASSLTSK-- 156 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT--TC---EEEEEEGGGGCCS--
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc--CC---eEEEEehHHhhcc--
Confidence 46899999999998876421 00 001245679999999999999999999843 21 2334444321110
Q ss_pred HHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCC-----------ChhhHHHHHhhhcC----CCCCcE
Q 003367 152 VAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSG-----------NPTKWEELVSTLKF----GSPESR 216 (826)
Q Consensus 152 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~l~~~~~~----~~~~s~ 216 (826)
.. . .....+...+......++.+|+||++..- .......+...+.. ...+..
T Consensus 157 --------~~----g-~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~ 223 (357)
T 3d8b_A 157 --------WV----G-EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRIL 223 (357)
T ss_dssp --------ST----T-HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEE
T ss_pred --------cc----c-hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEE
Confidence 00 0 00011111222222456789999999211 00112233333332 123445
Q ss_pred EEEecccHH-HHhhc--cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCC-CchhHHHHhh
Q 003367 217 ILVTTRKED-VAKMM--RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNG-LPLAAKTSGS 289 (826)
Q Consensus 217 iivTtR~~~-v~~~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g-lPLal~~~~~ 289 (826)
||.||.... +...+ .....+.+...+.++..+++...+........ .+..+.|++.+.| .+-.|..+..
T Consensus 224 vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 224 VVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS----EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 665665432 11111 12346778888888888888776643221111 3456778888888 4555665543
No 191
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.15 E-value=7.6e-05 Score=77.63 Aligned_cols=190 Identities=15% Similarity=0.127 Sum_probs=102.0
Q ss_pred CCccccchHHHHHHHHHHcCC----C--CCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHH
Q 003367 77 VSKVRGRDEEKKTIIDLLLGS----S--SQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEI 150 (826)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 150 (826)
-.+++|.++.++.|.+.+..+ . .......+-|.|+|++|+|||+||+++++... .. ..+.+..+.-.+.
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~---~~~~i~~~~l~~~- 85 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NS---TFFSISSSDLVSK- 85 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SC---EEEEEECCSSCCS-
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CC---cEEEEEhHHHHhh-
Confidence 356899999988888766311 0 00122347899999999999999999998431 11 2233443321110
Q ss_pred HHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCC-------Chh----hHHHHHhhhcC---CCCCcE
Q 003367 151 RVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSG-------NPT----KWEELVSTLKF---GSPESR 216 (826)
Q Consensus 151 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-------~~~----~~~~l~~~~~~---~~~~s~ 216 (826)
..+. ....+...+...-..++.+|+||++..- ... ....+...+.. ...+..
T Consensus 86 ---------~~g~-----~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~ 151 (322)
T 1xwi_A 86 ---------WLGE-----SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 151 (322)
T ss_dssp ---------SCCS-----CHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEE
T ss_pred ---------hhhH-----HHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEE
Confidence 0000 0111112222222467889999999431 001 11223333322 234455
Q ss_pred EEEecccHHHHh-hc--cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCc-hhHHHHhh
Q 003367 217 ILVTTRKEDVAK-MM--RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLP-LAAKTSGS 289 (826)
Q Consensus 217 iivTtR~~~v~~-~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glP-Lal~~~~~ 289 (826)
||.||....... .+ .....+.+...+.++..+++..+......... ....+.|++.+.|.. -.|..+..
T Consensus 152 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 152 VLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT----EADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC----HHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 665665432111 00 22456788888888888888876533221111 345677889998874 34555543
No 192
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.13 E-value=2.1e-05 Score=83.09 Aligned_cols=185 Identities=15% Similarity=0.107 Sum_probs=100.0
Q ss_pred CccccchHHHHHHHHHHcCC----C--CCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGS----S--SQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIR 151 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 151 (826)
.+++|.+..++.|.+.+..+ . .......+-|.|+|++|+|||+||+++++.. ... .+.+..+ .
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~--~~~---~~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA--NST---FFSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH--TCE---EEEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh--CCC---EEEeeHH------H
Confidence 56899999999998876311 0 0011233458899999999999999999843 222 2233321 1
Q ss_pred HHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCChh-----------hHHHHHhhhc---CCCCCcEE
Q 003367 152 VAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPT-----------KWEELVSTLK---FGSPESRI 217 (826)
Q Consensus 152 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-----------~~~~l~~~~~---~~~~~s~i 217 (826)
+ .....+. ....+...+......++.+|+||++..-... ....+...+. ....+..|
T Consensus 120 l----~~~~~g~-----~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 190 (355)
T 2qp9_X 120 L----VSKWMGE-----SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 190 (355)
T ss_dssp H----HSCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEE
T ss_pred H----hhhhcch-----HHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEE
Confidence 1 1111110 0111122222222457889999999432110 1223333332 12345566
Q ss_pred EEecccHH-----HHhhccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCC-chhHHHHh
Q 003367 218 LVTTRKED-----VAKMMRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGL-PLAAKTSG 288 (826)
Q Consensus 218 ivTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~gl-PLal~~~~ 288 (826)
|.||.... +.. .....+.+...+.++..+++..++........ ......|++.+.|. +-.|..+.
T Consensus 191 I~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~----~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 191 LGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLT----KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 66666442 222 22456788888888888898877643221111 33456788889884 44454443
No 193
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.12 E-value=9.9e-05 Score=76.08 Aligned_cols=185 Identities=15% Similarity=0.148 Sum_probs=99.0
Q ss_pred CccccchHHHHHHHHHHcCCC------CCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSS------SQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIR 151 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 151 (826)
.+++|.+..++.+.+.+..+. ..-....+.|.|+|++|+||||+|+++++.. .. ..+.++.+.-...
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~--~~---~~~~i~~~~l~~~-- 93 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC--SA---TFLNISAASLTSK-- 93 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT--TC---EEEEEESTTTSSS--
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh--CC---CeEEeeHHHHhhc--
Confidence 569999999999988763210 0001134679999999999999999999843 21 2233444332110
Q ss_pred HHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCC-----------hhhHHHHHhhhc---CC--CCCc
Q 003367 152 VAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGN-----------PTKWEELVSTLK---FG--SPES 215 (826)
Q Consensus 152 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~~~---~~--~~~s 215 (826)
..+ .........+......++.+|++|++..-. ......+...+. .. +.+.
T Consensus 94 --------~~~-----~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v 160 (297)
T 3b9p_A 94 --------YVG-----DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRI 160 (297)
T ss_dssp --------SCS-----CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CE
T ss_pred --------ccc-----hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcE
Confidence 000 001111112222224567899999994311 111112222222 11 1345
Q ss_pred EEEEecccHH-----HHhhccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCch-hHHHHh
Q 003367 216 RILVTTRKED-----VAKMMRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPL-AAKTSG 288 (826)
Q Consensus 216 ~iivTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPL-al~~~~ 288 (826)
.||.||.... +... ....+.+...+.++..+++...+........ .+..+.+++.+.|.+- ++..+.
T Consensus 161 ~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 161 VVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGSPLD----TEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp EEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSCCSC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 5666776542 2221 2346677777777777777766533221111 3456778888999876 454443
No 194
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.08 E-value=7.5e-05 Score=80.21 Aligned_cols=188 Identities=13% Similarity=0.118 Sum_probs=99.2
Q ss_pred CCccccchHHHHHHHHHHcCCCC------CCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHH
Q 003367 77 VSKVRGRDEEKKTIIDLLLGSSS------QEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEI 150 (826)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 150 (826)
-.+++|.+..++.+.+++..... ......+-|.|+|.+|+|||++|+++++.. .. ..+.++++.-...
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~--~~---~~~~v~~~~l~~~- 187 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES--NA---TFFNISAASLTSK- 187 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT--TC---EEEEECSCCC----
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh--cC---cEEEeeHHHhhcc-
Confidence 35699999999999887732100 001134679999999999999999998842 11 2233333322110
Q ss_pred HHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCC-----------ChhhHHHHHhhhc---C-CCCCc
Q 003367 151 RVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSG-----------NPTKWEELVSTLK---F-GSPES 215 (826)
Q Consensus 151 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~l~~~~~---~-~~~~s 215 (826)
. .+. ....+...+...-...+.+|+||++..- .......+...+. . .....
T Consensus 188 -~-------~g~------~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 253 (389)
T 3vfd_A 188 -Y-------VGE------GEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRV 253 (389)
T ss_dssp ------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CE
T ss_pred -c-------cch------HHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCE
Confidence 0 000 0011111222222345679999999321 0111112222222 1 12334
Q ss_pred EEEEecccHHHHh-hc--cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCch-hHHHHh
Q 003367 216 RILVTTRKEDVAK-MM--RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPL-AAKTSG 288 (826)
Q Consensus 216 ~iivTtR~~~v~~-~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPL-al~~~~ 288 (826)
.||.||....... .+ .....+.+...+.++..+++...+........ .+....|++.+.|..- +|..+.
T Consensus 254 ~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 254 LVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT----QKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 5665665432111 11 12346788888889999998877643322111 3456778888888654 555543
No 195
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.06 E-value=9.1e-06 Score=76.92 Aligned_cols=121 Identities=17% Similarity=0.216 Sum_probs=64.5
Q ss_pred chHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcc
Q 003367 83 RDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRD 162 (826)
Q Consensus 83 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 162 (826)
+++.++.+.+++..-.. ...+.++|+|+.|+||||||+.+++.......+ .+++++ ..++...+......
T Consensus 19 ~~~~~~~~~~~~~~~~~---~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP---EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCCG---GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcC
Confidence 44555555555543321 134689999999999999999999854212222 233443 33444444433321
Q ss_pred cchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCChhhHH--HHHhhhcCC-CCCcEEEEeccc
Q 003367 163 VVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWE--ELVSTLKFG-SPESRILVTTRK 223 (826)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~--~l~~~~~~~-~~~s~iivTtR~ 223 (826)
.... ...+. + .+.-+|||||++....+.|. .+...+... ..|..+|+||..
T Consensus 89 ~~~~-----~~~~~----~-~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 89 GKDT-----KFLKT----V-LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp TCCS-----HHHHH----H-HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred chHH-----HHHHH----h-cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 1110 11111 1 14569999999742323333 333333221 246688888864
No 196
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.05 E-value=1.2e-06 Score=80.95 Aligned_cols=36 Identities=6% Similarity=0.094 Sum_probs=18.1
Q ss_pred CCcEEEEecCCCCCC-CCCCCCCCccceeeccccccc
Q 003367 677 ELRMLNLQRCGKCEQ-LPSLGRLPSLESLVVEALSSV 712 (826)
Q Consensus 677 ~L~~L~L~~~~~~~~-l~~l~~l~~L~~L~L~~~~~l 712 (826)
+|+.|+|++|.++.. +..+..+++|+.|+|++|..+
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~I 98 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYI 98 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCcc
Confidence 466666666654321 223444555555555555443
No 197
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.01 E-value=0.00012 Score=79.84 Aligned_cols=189 Identities=15% Similarity=0.121 Sum_probs=100.2
Q ss_pred CCccccchHHHHHHHHHHcCC----C--CCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHH
Q 003367 77 VSKVRGRDEEKKTIIDLLLGS----S--SQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEI 150 (826)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 150 (826)
-.+++|.++.++.|.+.+..+ . .......+-|.|+|++|+|||+||+++++... ...++.++...
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~------~~~~~~v~~~~--- 203 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN------NSTFFSISSSD--- 203 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC------SSEEEEECCC----
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC------CCCEEEEeHHH---
Confidence 356899999999998876311 0 00112447899999999999999999998431 11233333221
Q ss_pred HHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCC-------hh----hHHHHHhhhcC---CCCCcE
Q 003367 151 RVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGN-------PT----KWEELVSTLKF---GSPESR 216 (826)
Q Consensus 151 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------~~----~~~~l~~~~~~---~~~~s~ 216 (826)
+.... .+.. ...+..+.. ..-..++.+|+||++..-. .. ....+...+.. ...+..
T Consensus 204 -l~~~~---~g~~---~~~~~~~f~---~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~ 273 (444)
T 2zan_A 204 -LVSKW---LGES---EKLVKNLFQ---LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 273 (444)
T ss_dssp ------------C---CCTHHHHHH---HHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCE
T ss_pred -HHhhh---cchH---HHHHHHHHH---HHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEE
Confidence 11110 1111 111222222 2224577899999995321 01 11223333322 234556
Q ss_pred EEEecccHHHHhh--c-cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCC-chhHHHHh
Q 003367 217 ILVTTRKEDVAKM--M-RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGL-PLAAKTSG 288 (826)
Q Consensus 217 iivTtR~~~v~~~--~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~gl-PLal~~~~ 288 (826)
||.||........ . .....+.+...+.++..++|..++........ ......|++.+.|. +-.|..+.
T Consensus 274 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 274 VLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT----EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 7767765432111 0 22346778777778888888777533221111 24456788889885 43455443
No 198
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.00 E-value=7.2e-05 Score=77.14 Aligned_cols=181 Identities=15% Similarity=0.210 Sum_probs=99.5
Q ss_pred CccccchHHHHHHHHHHcCCC-------CCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSS-------SQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEI 150 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~-------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 150 (826)
.+++|.++.++++.+++...- .-+-...+.|.|+|++|+|||+||+++++.. ... ++.+. ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~--~~~-----~i~v~----~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC--QAN-----FISIK----GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT--TCE-----EEEEC----HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh--CCC-----EEEEE----hH
Confidence 468999999888888764310 0001234679999999999999999999843 211 22222 22
Q ss_pred HHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCC--------------ChhhHHHHHhhhcC--CCCC
Q 003367 151 RVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSG--------------NPTKWEELVSTLKF--GSPE 214 (826)
Q Consensus 151 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--------------~~~~~~~l~~~~~~--~~~~ 214 (826)
.+.... ++.. . ..+...+.......+.+|++|++..- .......+...+.. ...+
T Consensus 84 ~l~~~~---~g~~---~---~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 154 (301)
T 3cf0_A 84 ELLTMW---FGES---E---ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 154 (301)
T ss_dssp HHHHHH---HTTC---T---THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSS
T ss_pred HHHhhh---cCch---H---HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 222211 1111 1 11222233333456789999999420 00112344444432 2335
Q ss_pred cEEEEecccHHHHhh--c---cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchh
Q 003367 215 SRILVTTRKEDVAKM--M---RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLA 283 (826)
Q Consensus 215 s~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLa 283 (826)
..||.||........ . .....+.+...+.++-.+++......... .....+ ..+++.+.|.|-+
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCCH----HHHHHTCSSCCHH
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-CccchH----HHHHHHcCCCCHH
Confidence 567777765532211 1 12457889888888888888776533221 111122 3466677777754
No 199
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.00 E-value=4.7e-06 Score=75.37 Aligned_cols=110 Identities=10% Similarity=0.069 Sum_probs=63.8
Q ss_pred ccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHH
Q 003367 79 KVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILE 158 (826)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 158 (826)
.++|++..++++.+.+..... ...-|.|+|..|+|||++|+.+++... ..+.++++. -.....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~--~~~~~~----- 67 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVE--YLIDMP----- 67 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTT--HHHHCH-----
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhh--CChHhh-----
Confidence 578999999888887754221 123478999999999999999998322 222222221 000000
Q ss_pred HhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCC-CCCcEEEEeccc
Q 003367 159 SFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFG-SPESRILVTTRK 223 (826)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~-~~~s~iivTtR~ 223 (826)
...+ + ..+.-.++||++..-.......+...+... ..+.++|+||..
T Consensus 68 ---------------~~~~-~--~a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 68 ---------------MELL-Q--KAEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp ---------------HHHH-H--HTTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred ---------------hhHH-H--hCCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 0111 1 123457899999766555555566555433 345678887763
No 200
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.00 E-value=1.6e-06 Score=82.52 Aligned_cols=121 Identities=16% Similarity=0.101 Sum_probs=88.5
Q ss_pred hhchhhhccCCCCcEEecccc-ccccccccccccccccCCCCccEEEccCCCCccc-----cchhhcCCCCCcEEeccCC
Q 003367 452 IALPSLFDRLTCLRTLCLRCH-ERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYE-----LPEALCDLCNLQTLDVSNC 525 (826)
Q Consensus 452 ~~~~~~~~~l~~Lr~L~L~~~-~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~-----lp~~i~~L~~L~~L~L~~~ 525 (826)
..+...+...+.|++|+|++| .+... ....+...+...++|++|+|++|. ++. +...+...++|++|+|++|
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~-g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVP-TLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHH-HHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHH-HHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 344566788999999999976 55433 445566677888999999999998 442 4455667789999999999
Q ss_pred CCCcc----cchhhhcccCCCeeee--cCccccc-----CCccCCCCCCCCcCCceeeCc
Q 003367 526 GNLHA----LPQGIAKLINLRHLIN--EGTPLLY-----LPKGLERLTCLRTLSEFTVSD 574 (826)
Q Consensus 526 ~~~~~----lp~~i~~L~~L~~L~l--~~~~l~~-----lp~~i~~L~~L~~L~~~~~~~ 574 (826)
.+... +...+...++|++|++ ++|.+.. +...+...++|++|++..+..
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 85432 4566777788999999 7788762 344456667888888766544
No 201
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.97 E-value=4e-05 Score=78.71 Aligned_cols=149 Identities=9% Similarity=0.020 Sum_probs=94.1
Q ss_pred cchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccc-cccCCCcEEEEEeCC-CCCHHHHHHHHHHH
Q 003367 82 GRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVK-VDAHFDKRIWVCFSD-PVDEIRVAKAILES 159 (826)
Q Consensus 82 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~ 159 (826)
|-++.++.+...+... ......++|+.|+||||+|+.+++... ....+..+.++..+. ...+..+ +++.+.
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~i-r~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDI-RTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHH-HHHHHH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHH-HHHHHH
Confidence 4455667777777543 256889999999999999999987311 111122334454332 2222222 223322
Q ss_pred hcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccH-HHHhhccccceEEc
Q 003367 160 FRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKE-DVAKMMRTTSMILL 238 (826)
Q Consensus 160 l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~-~v~~~~~~~~~~~l 238 (826)
+.... ..+++-++|+|+++.-.....+.+...+....+.+.+|++|..+ .+...+... .+++
T Consensus 74 ~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f 136 (305)
T 2gno_A 74 LNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRV 136 (305)
T ss_dssp HTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred Hhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeC
Confidence 22110 13467799999997666777788888887777777877776543 344444444 8999
Q ss_pred cCCCCchhHHHHHHhh
Q 003367 239 AKLPDNDCWSLFSQIA 254 (826)
Q Consensus 239 ~~L~~~~~~~lf~~~a 254 (826)
.++++++..+.+.+.+
T Consensus 137 ~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 137 VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ECCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999988775
No 202
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.93 E-value=0.00088 Score=70.04 Aligned_cols=176 Identities=20% Similarity=0.181 Sum_probs=95.8
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
..++|.+..++.+...+..... .......++|+|+.|+||||||+.++.... ..| ......-.....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~--~~~---~~~sg~~~~~~~------- 91 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASELQ--TNI---HVTSGPVLVKQG------- 91 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHHHT--CCE---EEEETTTCCSHH-------
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHHhC--CCE---EEEechHhcCHH-------
Confidence 4688998888887766643200 011345799999999999999999998432 211 111111111111
Q ss_pred HHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCCC------------------CCcEEE-
Q 003367 158 ESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGS------------------PESRIL- 218 (826)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~------------------~~s~ii- 218 (826)
++...+. .+ .++-++++|++..-.....+.+...+.... +...++
T Consensus 92 --------------~l~~~~~-~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 92 --------------DMAAILT-SL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp --------------HHHHHHH-HC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred --------------HHHHHHH-Hc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 1111111 12 244577888885444333444433222111 011222
Q ss_pred EecccHHHHhhcc--ccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHH
Q 003367 219 VTTRKEDVAKMMR--TTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKT 286 (826)
Q Consensus 219 vTtR~~~v~~~~~--~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~ 286 (826)
.|++...+...+. ....+.+++.+.++-.+++.+.+.......+ .+.+..|++.+.|.|-.+..
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~----~~~~~~ia~~~~G~~R~a~~ 221 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIE----DAAAEMIAKRSRGTPRIAIR 221 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBC----HHHHHHHHHTSTTCHHHHHH
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcC----HHHHHHHHHhcCCChHHHHH
Confidence 3444333221111 1235789999999999999887643222121 46688899999999975443
No 203
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.88 E-value=7.4e-06 Score=79.23 Aligned_cols=119 Identities=18% Similarity=0.230 Sum_probs=61.0
Q ss_pred HHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccc
Q 003367 85 EEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVV 164 (826)
Q Consensus 85 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 164 (826)
+.++.+.+++..... ....+.|.|+|++|+||||||+++++... .....++|+++. .+...+...+...
T Consensus 36 ~~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~~~--~~~~~~~~~~~~------~~~~~~~~~~~~~- 104 (202)
T 2w58_A 36 KAIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANELA--KRNVSSLIVYVP------ELFRELKHSLQDQ- 104 (202)
T ss_dssp HHHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEEEHH------HHHHHHHHC---C-
T ss_pred HHHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEhH------HHHHHHHHHhccc-
Confidence 344555666654321 11226799999999999999999998442 333456666543 3334433322111
Q ss_pred hhhhhHHHHHHHHHHHhcCCceeEEeccCCCCChhhHHH--HHh-hhcC-CCCCcEEEEeccc
Q 003367 165 SAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEE--LVS-TLKF-GSPESRILVTTRK 223 (826)
Q Consensus 165 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~--l~~-~~~~-~~~~s~iivTtR~ 223 (826)
........+. +.-+|||||++......|.. +.. .+.. ...+.++|+||..
T Consensus 105 ----~~~~~~~~~~-----~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 105 ----TMNEKLDYIK-----KVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp ----CCHHHHHHHH-----HSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred ----hHHHHHHHhc-----CCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 1122222222 12399999996533322211 221 1111 1234578888874
No 204
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.86 E-value=1.4e-05 Score=79.85 Aligned_cols=83 Identities=18% Similarity=0.167 Sum_probs=54.6
Q ss_pred hccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCCccccchhhcCCC--CCcEEeccCCCCCcccc---
Q 003367 458 FDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYELPEALCDLC--NLQTLDVSNCGNLHALP--- 532 (826)
Q Consensus 458 ~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~--~L~~L~L~~~~~~~~lp--- 532 (826)
..++++|+.|+|++|.+. .+..+|..+..+++|++|+|++|. +..+. .+..+. +|++|+|++|.+.+.+|
T Consensus 166 ~~~l~~L~~L~Ls~N~l~---~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~ 240 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLY---RLDDMSSIVQKAPNLKILNLSGNE-LKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQS 240 (267)
T ss_dssp HHHCTTCCEEECTTSCCC---CCGGGTTHHHHSTTCCEEECTTSC-CCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHH
T ss_pred HhhCCCCCEEECCCCCCC---CCccchhHHhhCCCCCEEECCCCc-cCCch-hhhhcccCCcceEEccCCcCccccCcch
Confidence 356778888888866544 334455666778888888888887 44442 244444 78888888887655554
Q ss_pred ----hhhhcccCCCeee
Q 003367 533 ----QGIAKLINLRHLI 545 (826)
Q Consensus 533 ----~~i~~L~~L~~L~ 545 (826)
..+..+++|+.|+
T Consensus 241 ~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 241 TYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHCTTCCEES
T ss_pred hHHHHHHHHCcccCeEC
Confidence 2356677777775
No 205
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.85 E-value=2.7e-05 Score=92.54 Aligned_cols=154 Identities=18% Similarity=0.254 Sum_probs=80.2
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhccccccc---CC--CcEEEEEeCCCCCHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDA---HF--DKRIWVCFSDPVDEIRV 152 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~f--~~~~wv~~~~~~~~~~~ 152 (826)
..++||+++++++.+.+.... ...+.|+|.+|+||||+|+.+++...... .. ..+++++++.-....
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~-- 241 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGA-- 241 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccC--
Confidence 458999999999999986532 23478999999999999999998532111 11 123344332211000
Q ss_pred HHHHHHHhcccchhhhhHH-HHHHHHHHHhc-CCceeEEeccCCCCC--------hhhHHHHHhhhcCCCCCcEEEEecc
Q 003367 153 AKAILESFRDVVSAVAAFD-TLLRHIEKSVK-GKKFLLVLDDVWSGN--------PTKWEELVSTLKFGSPESRILVTTR 222 (826)
Q Consensus 153 ~~~i~~~l~~~~~~~~~~~-~~~~~l~~~l~-~k~~LlVlDdv~~~~--------~~~~~~l~~~~~~~~~~s~iivTtR 222 (826)
....+.. .+...+...-. +++.+|++|++..-. .+....+...+.. .+..+|.||.
T Consensus 242 ------------~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~ 307 (854)
T 1qvr_A 242 ------------KYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATT 307 (854)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEEC
T ss_pred ------------ccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecC
Confidence 0000111 12222222222 468899999995421 1111123333322 2344565555
Q ss_pred cHHHH-----hhc-cccceEEccCCCCchhHHHHHHh
Q 003367 223 KEDVA-----KMM-RTTSMILLAKLPDNDCWSLFSQI 253 (826)
Q Consensus 223 ~~~v~-----~~~-~~~~~~~l~~L~~~~~~~lf~~~ 253 (826)
..... ..+ .....+.+.+++.++..+++...
T Consensus 308 ~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 308 LDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred chHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 43321 111 11235889999999999988644
No 206
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.79 E-value=4.8e-05 Score=76.99 Aligned_cols=133 Identities=15% Similarity=0.165 Sum_probs=68.6
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
..++|.+..+.++.+.+..... ....|.|+|..|+|||++|+.+++... ..-...+.++++.-. ...+...+
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~~~--~~~~~~~~v~~~~~~-~~~~~~~l- 77 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYLSS--RWQGPFISLNCAALN-ENLLDSEL- 77 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHTST--TTTSCEEEEEGGGSC-HHHHHHHH-
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhcC--ccCCCeEEEecCCCC-hhHHHHHh-
Confidence 4589999999888876654222 124578999999999999999998432 111234556655432 11111111
Q ss_pred HHhcccchhhhhHH-HHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCC-----------CCCcEEEEeccc
Q 003367 158 ESFRDVVSAVAAFD-TLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFG-----------SPESRILVTTRK 223 (826)
Q Consensus 158 ~~l~~~~~~~~~~~-~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~-----------~~~s~iivTtR~ 223 (826)
++.......... .....+. ....-+|+||++..-.....+.+...+..+ ..+.+||.||..
T Consensus 78 --~g~~~~~~~g~~~~~~~~l~---~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 78 --FGHEAGAFTGAQKRHPGRFE---RADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp --HCCC---------CCCCHHH---HTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred --cCCcccccccccccccchhh---hcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 111100000000 0000011 123458999999665555555565554422 134678888775
No 207
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.00054 Score=73.10 Aligned_cols=179 Identities=21% Similarity=0.178 Sum_probs=93.2
Q ss_pred CccccchHHHHHHHHHHcCCCC-------CCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSS-------QEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEI 150 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 150 (826)
.++.|.++.+++|.+.+..+-. -+-..++-|.++|++|.|||+||+++++... .. .+.|..+.-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~--~~---~~~v~~~~l~~-- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK--AA---FIRVNGSEFVH-- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT--CE---EEEEEGGGTCC--
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC--CC---eEEEecchhhc--
Confidence 4688999999888776532100 0223456799999999999999999998432 22 23444333111
Q ss_pred HHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCC----------CChh----hHHHHHhhhc--CCCCC
Q 003367 151 RVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWS----------GNPT----KWEELVSTLK--FGSPE 214 (826)
Q Consensus 151 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~----------~~~~----~~~~l~~~~~--~~~~~ 214 (826)
.... .....+.+.+...-...+++|++|++.. .... ....++..+. ....+
T Consensus 245 ------------~~~G-e~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~ 311 (428)
T 4b4t_K 245 ------------KYLG-EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTN 311 (428)
T ss_dssp ------------SSCS-HHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCS
T ss_pred ------------cccc-hhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCC
Confidence 0000 0111122222223346789999999831 0011 1222333333 22345
Q ss_pred cEEEEecccHHH-----HhhccccceEEccCCCCchhH-HHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCc
Q 003367 215 SRILVTTRKEDV-----AKMMRTTSMILLAKLPDNDCW-SLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLP 281 (826)
Q Consensus 215 s~iivTtR~~~v-----~~~~~~~~~~~l~~L~~~~~~-~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glP 281 (826)
..||.||..... .+...-+..+++..+++.++. ++|..+.-+ .......++ ..+++.+.|.-
T Consensus 312 v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~-~~l~~~~dl----~~lA~~t~G~s 379 (428)
T 4b4t_K 312 VKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASK-MSLAPEADL----DSLIIRNDSLS 379 (428)
T ss_dssp EEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHS-SCBCTTCCH----HHHHHHTTTCC
T ss_pred EEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcC-CCCCcccCH----HHHHHHCCCCC
Confidence 566777765432 221123456778777665554 455554432 211122223 44677777754
No 208
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.78 E-value=0.00062 Score=73.24 Aligned_cols=87 Identities=11% Similarity=0.145 Sum_probs=41.5
Q ss_pred hhhhccCCCCcEEecccccccccccccccc-ccccCCCCccEEEccCCCCccccc-hhhcCCCCCcEEeccCCCCCcccc
Q 003367 455 PSLFDRLTCLRTLCLRCHERHFCLSIARLP-RNIKKLKHLRYLNLSNNDAIYELP-EALCDLCNLQTLDVSNCGNLHALP 532 (826)
Q Consensus 455 ~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~l~~L~~L~Ls~~~~~~~lp-~~i~~L~~L~~L~L~~~~~~~~lp 532 (826)
...|.+|.+|+.+.+..+... .+..+. .+|..+.+|+.+.+..+ +..++ ..|..+.+|+.+.+..+. ...-.
T Consensus 80 ~~AF~~C~~L~~i~~~~n~p~---~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~i~lp~~~-~~I~~ 153 (394)
T 4gt6_A 80 SNAFYNCTSLKRVTIQDNKPS---CVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDTVTIPEGV-TSVAD 153 (394)
T ss_dssp TTTTTTCTTCCEEEEGGGCCC---CCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCEEECCTTC-CEECT
T ss_pred HHHhhCCccCceEeecCCCCC---eeeEechhhchhcccceeeccCCc--cceehhhhhhhhccccccccccee-eeecc
Confidence 345666666666666522110 222332 34555556665555443 22232 335556666666665332 22222
Q ss_pred hhhhcccCCCeeeec
Q 003367 533 QGIAKLINLRHLINE 547 (826)
Q Consensus 533 ~~i~~L~~L~~L~l~ 547 (826)
..+..+.+|+.+.+.
T Consensus 154 ~~F~~c~~L~~i~~~ 168 (394)
T 4gt6_A 154 GMFSYCYSLHTVTLP 168 (394)
T ss_dssp TTTTTCTTCCEEECC
T ss_pred cceeccccccccccc
Confidence 345555666666554
No 209
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.78 E-value=0.0001 Score=80.90 Aligned_cols=97 Identities=8% Similarity=0.021 Sum_probs=60.1
Q ss_pred eeEEeccCCCCChhhHHHHHhhhcCCCCCcEEE-Ee---------cc----cHHHH-hhccccceEEccCCCCchhHHHH
Q 003367 186 FLLVLDDVWSGNPTKWEELVSTLKFGSPESRIL-VT---------TR----KEDVA-KMMRTTSMILLAKLPDNDCWSLF 250 (826)
Q Consensus 186 ~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~ii-vT---------tR----~~~v~-~~~~~~~~~~l~~L~~~~~~~lf 250 (826)
-++++|++..-+.+.++.+...+...... .+| .| |. ...+. ........+.+.+++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 38999999777777788888877655444 344 44 32 11111 11122345799999999999999
Q ss_pred HHhhhcCCCcccchhhHHHHHHHHHhc-CCCchhHHHH
Q 003367 251 SQIAFSGRTTEECQKLTDIGRMIADKC-NGLPLAAKTS 287 (826)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~i~~~~-~glPLal~~~ 287 (826)
..++........ .+....|++.+ .|.|.....+
T Consensus 376 ~~~~~~~~~~~~----~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 376 KIRAQTEGINIS----EEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHTCCBC----HHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHhCCCCC----HHHHHHHHHHccCCCHHHHHHH
Confidence 887632222111 45567788887 7877654443
No 210
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.77 E-value=4.1e-06 Score=77.40 Aligned_cols=89 Identities=20% Similarity=0.230 Sum_probs=60.2
Q ss_pred CCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCC--CCCCCCC----CccceeeccccccceEeCcccccCCC
Q 003367 651 SPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQ--LPSLGRL----PSLESLVVEALSSVRRVGNEFLGIES 724 (826)
Q Consensus 651 ~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~--l~~l~~l----~~L~~L~L~~~~~l~~~~~~~~~~~~ 724 (826)
..+|++|++++|.++...-..+..+++|++|+|++|...++ +..+..+ ++|++|+|++|..++..+-..
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~----- 134 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA----- 134 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH-----
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH-----
Confidence 34799999999987654345567899999999999975443 2234443 478888888887665433221
Q ss_pred CccccCccCcCCCccceeeccccccccc
Q 003367 725 DDISLSSSSVVFPKLKFLEFRDMDEWEE 752 (826)
Q Consensus 725 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 752 (826)
+..+++|++|++++|+.+++
T Consensus 135 --------L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 135 --------LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp --------GGGCTTCCEEEEESCTTCCC
T ss_pred --------HhcCCCCCEEECCCCCCCCc
Confidence 12467777777777766654
No 211
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.76 E-value=5.6e-05 Score=83.06 Aligned_cols=147 Identities=16% Similarity=0.229 Sum_probs=78.8
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhccccccc---CC-C-cEEEEEeCCCCCHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDA---HF-D-KRIWVCFSDPVDEIRV 152 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~f-~-~~~wv~~~~~~~~~~~ 152 (826)
..++||+++++++...+... ...-+.|+|++|+|||++|+.++....... .. + .++.++++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~------~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRR------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCS------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCcHHHHHHHHHHHhcc------CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC--------
Confidence 45999999999999999653 223578999999999999999998431110 00 1 12222222
Q ss_pred HHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccHHHHh---h
Q 003367 153 AKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKEDVAK---M 229 (826)
Q Consensus 153 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~~v~~---~ 229 (826)
....+. ....... .+...-..++.+|++|.- .+....+...+. ....++|.+|....... .
T Consensus 246 -----~~~~g~--~e~~~~~---~~~~~~~~~~~iLfiD~~----~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 246 -----TKYRGE--FEDRLKK---VMDEIRQAGNIILFIDAA----IDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp --------------CTTHHH---HHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred -----ccccch--HHHHHHH---HHHHHHhcCCeEEEEeCc----hhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhc
Confidence 000000 0011122 222222457789999921 112222333332 22346666665443111 0
Q ss_pred ----ccccceEEccCCCCchhHHHHHHhh
Q 003367 230 ----MRTTSMILLAKLPDNDCWSLFSQIA 254 (826)
Q Consensus 230 ----~~~~~~~~l~~L~~~~~~~lf~~~a 254 (826)
...-..+.+...+.++..+++...+
T Consensus 310 ~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred CHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 1112368899999999999998764
No 212
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.76 E-value=7.4e-05 Score=77.66 Aligned_cols=136 Identities=17% Similarity=0.265 Sum_probs=74.6
Q ss_pred ccccchHHHHHHHHHHcCCCC---CCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHH
Q 003367 79 KVRGRDEEKKTIIDLLLGSSS---QEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKA 155 (826)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 155 (826)
.++|.+..++.+...+..... ........+.|+|++|+|||++|+.++.... ..-...+.+.++....... ...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~--~~~~~~~~~~~~~~~~~~~-~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF--DTEEAMIRIDMTEYMEKHA-VSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH--SCGGGEEEEEGGGCCSTTH-HHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc--CCCcceEEeeccccccccc-HHH
Confidence 478999998888887754311 0111234799999999999999999998432 2112345566554332211 111
Q ss_pred HHHHhcccch--hhhhHHHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCCC-----------CCcEEEEecc
Q 003367 156 ILESFRDVVS--AVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGS-----------PESRILVTTR 222 (826)
Q Consensus 156 i~~~l~~~~~--~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~-----------~~s~iivTtR 222 (826)
+ ++.... .......+...+. ....-+++||++..-.......+...+..+. ....+|.||.
T Consensus 95 l---~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn 168 (311)
T 4fcw_A 95 L---IGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSN 168 (311)
T ss_dssp H---HCCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEES
T ss_pred h---cCCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecc
Confidence 1 221110 0000011222222 2344699999996656666666666554321 2344777776
Q ss_pred c
Q 003367 223 K 223 (826)
Q Consensus 223 ~ 223 (826)
.
T Consensus 169 ~ 169 (311)
T 4fcw_A 169 L 169 (311)
T ss_dssp T
T ss_pred c
Confidence 5
No 213
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.75 E-value=6.6e-05 Score=77.34 Aligned_cols=160 Identities=16% Similarity=0.151 Sum_probs=84.0
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
..++|++..+.++.+.+..... ....|.|+|.+|+|||++|+.+++.... .. ...+.++++.-. ..++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~~~~-~~-~~~v~v~~~~~~--~~l~~~-- 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHACSAR-SD-RPLVTLNCAALN--ESLLES-- 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHHSSC-SS-SCCCEEECSSCC--HHHHHH--
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHhCcc-cC-CCeEEEeCCCCC--hHHHHH--
Confidence 4589999999998888765332 2235789999999999999999984211 11 123345555432 122111
Q ss_pred HHhcccchhhhhH-HHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCC-----------CCCcEEEEecccHH
Q 003367 158 ESFRDVVSAVAAF-DTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFG-----------SPESRILVTTRKED 225 (826)
Q Consensus 158 ~~l~~~~~~~~~~-~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~-----------~~~s~iivTtR~~~ 225 (826)
+.++......... ......+.. ...-.|+||++..-.......+...+... ....+||.||...-
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~---a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l 148 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVE---ADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDL 148 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHH---HTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCH
T ss_pred HhcCccccccCchhhhhcCHHHh---cCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccH
Confidence 1122111000000 000001111 12347999999765555555666655432 13467888776531
Q ss_pred ---HHh---------hccccceEEccCCC--CchhHHHHH
Q 003367 226 ---VAK---------MMRTTSMILLAKLP--DNDCWSLFS 251 (826)
Q Consensus 226 ---v~~---------~~~~~~~~~l~~L~--~~~~~~lf~ 251 (826)
+.. .+. ...+.+.+|. .+|...++.
T Consensus 149 ~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~ 187 (304)
T 1ojl_A 149 AEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLAD 187 (304)
T ss_dssp HHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHH
T ss_pred HHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHH
Confidence 111 111 2347788887 455554444
No 214
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.74 E-value=0.00015 Score=79.51 Aligned_cols=185 Identities=14% Similarity=0.134 Sum_probs=101.5
Q ss_pred CccccchHHHHHHHHHHcCCCC-------CCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSS-------QEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEI 150 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 150 (826)
..++|.+..++++.+++..... -+....+-|.|+|++|+|||++|+++++.. ... .+.++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~--~~~---fv~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--GAF---FFLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC--SSE---EEEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh--CCC---EEEEEch------
Confidence 4589999999999887753200 001134568999999999999999999843 222 2334321
Q ss_pred HHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCC--------C---hhhHHHHHhhhcC--CCCCcEE
Q 003367 151 RVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSG--------N---PTKWEELVSTLKF--GSPESRI 217 (826)
Q Consensus 151 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--------~---~~~~~~l~~~~~~--~~~~s~i 217 (826)
.+...+.+ .........+.....+++.+|+||++..- . ......+...+.. ...+..|
T Consensus 273 ----~l~~~~~g-----~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 273 ----EIMSKLAG-----ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp ----HHHTSCTT-----HHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred ----Hhhhhhcc-----hhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 11111111 11122233344444567889999999210 1 0122334444432 2334566
Q ss_pred EEecccHHH-Hhhc----cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCC-chhHHHH
Q 003367 218 LVTTRKEDV-AKMM----RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGL-PLAAKTS 287 (826)
Q Consensus 218 ivTtR~~~v-~~~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~gl-PLal~~~ 287 (826)
|.||..... ...+ .....+.+...+.++-.+++..++..... .....+ .++++.+.|. +-.+..+
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhhH----HHHHHHccCCcHHHHHHH
Confidence 667765432 1111 22346889999999999999887633221 111122 4466777774 4444443
No 215
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.74 E-value=0.00026 Score=73.46 Aligned_cols=52 Identities=23% Similarity=0.357 Sum_probs=37.9
Q ss_pred CccccchHHHHHHHHHHcCC--C-CC-----CCCCccEEEEEecCCCcHHHHHHHHhccc
Q 003367 78 SKVRGRDEEKKTIIDLLLGS--S-SQ-----EKMSLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~--~-~~-----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
..++|+++.++.+...+... . .- .......+.|+|++|+|||++|+.+++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999998877541 0 00 00123468899999999999999999843
No 216
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.74 E-value=0.00063 Score=71.47 Aligned_cols=180 Identities=19% Similarity=0.146 Sum_probs=98.3
Q ss_pred CccccchHHHHHHHHHHcCC----C---CCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGS----S---SQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEI 150 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~----~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 150 (826)
.++.|.++.+++|.+.+.-+ . .-+-..++-|.++|++|.|||.||+++++.. ... .+.|..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~--~~~---f~~v~~s~l~s-- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT--DCK---FIRVSGAELVQ-- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH--TCE---EEEEEGGGGSC--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh--CCC---ceEEEhHHhhc--
Confidence 45789998888887765321 0 0012245668999999999999999999843 222 23444332111
Q ss_pred HHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCC--------h--h----hHHHHHhhhcC--CCCC
Q 003367 151 RVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGN--------P--T----KWEELVSTLKF--GSPE 214 (826)
Q Consensus 151 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~--~----~~~~l~~~~~~--~~~~ 214 (826)
.... .....+.+.+...-...+++|++|++..-- . . ....++..+.. ...+
T Consensus 221 ------------k~vG-ese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 287 (405)
T 4b4t_J 221 ------------KYIG-EGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKN 287 (405)
T ss_dssp ------------SSTT-HHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCC
T ss_pred ------------cccc-hHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCC
Confidence 0000 011112222222334678999999995310 0 0 12223333332 2334
Q ss_pred cEEEEecccHHH-----HhhccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCch
Q 003367 215 SRILVTTRKEDV-----AKMMRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPL 282 (826)
Q Consensus 215 s~iivTtR~~~v-----~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPL 282 (826)
..||.||..... .+...-+..+.+..-+.++-.++|+.+.-+-.. ...-++ +.|++.+.|.--
T Consensus 288 V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-~~dvdl----~~lA~~t~G~SG 355 (405)
T 4b4t_J 288 IKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL-TRGINL----RKVAEKMNGCSG 355 (405)
T ss_dssp EEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC-CSSCCH----HHHHHHCCSCCH
T ss_pred eEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC-CccCCH----HHHHHHCCCCCH
Confidence 456667765432 221234678889888888888888776533211 112223 457777877543
No 217
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.74 E-value=2.9e-05 Score=70.47 Aligned_cols=86 Identities=14% Similarity=0.096 Sum_probs=51.2
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCc
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKK 185 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 185 (826)
..++|+|..|+|||||++.++......+ ..++++........ .+..+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g--~~~~~~~~~~~~~~------------------------------~~~~~~ 84 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAG--KNAAYIDAASMPLT------------------------------DAAFEA 84 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTT--CCEEEEETTTSCCC------------------------------GGGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcC--CcEEEEcHHHhhHH------------------------------HHHhCC
Confidence 5899999999999999999998543211 12566665432221 012245
Q ss_pred eeEEeccCCCCChhhHHHHHhhhcC-CCCCc-EEEEeccc
Q 003367 186 FLLVLDDVWSGNPTKWEELVSTLKF-GSPES-RILVTTRK 223 (826)
Q Consensus 186 ~LlVlDdv~~~~~~~~~~l~~~~~~-~~~~s-~iivTtR~ 223 (826)
-++||||+...+...-+.+...+.. ...|. +||+||+.
T Consensus 85 ~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 85 EYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp SEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 6899999965443333334333321 11233 48888873
No 218
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.71 E-value=1.2e-05 Score=76.44 Aligned_cols=118 Identities=16% Similarity=0.062 Sum_probs=85.0
Q ss_pred CCcceEEEEEec-CCCCccccCCcccchhhhchhhhccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCC
Q 003367 424 ETKLRSLSIVHK-SNSSTIFPGIRDSVADIALPSLFDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNND 502 (826)
Q Consensus 424 ~~~lr~l~l~~~-~~~~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~ 502 (826)
...++.|+++.+ ..... .. ..+...+...+.|++|+|++|.+... ....+...+...++|++|+|++|.
T Consensus 35 ~~~L~~L~L~~n~~i~~~--------g~-~~l~~~L~~~~~L~~L~Ls~n~i~~~-g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVP--------TL-KACAEALKTNTYVKKFSIVGTRSNDP-VAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp CTTCCEEECTTCTTCCHH--------HH-HHHHHHHTTCCSCCEEECTTSCCCHH-HHHHHHHHHHHCSSCCEEECCSSC
T ss_pred CCCCCEEEecCCCCCCHH--------HH-HHHHHHHHhCCCcCEEECcCCCCChH-HHHHHHHHHHhCCCcCEEECcCCc
Confidence 567888888765 33210 11 12345677789999999997766433 334456667778899999999998
Q ss_pred Cccc-----cchhhcCCCCCcEEec--cCCCCCcc----cchhhhcccCCCeeeecCcccc
Q 003367 503 AIYE-----LPEALCDLCNLQTLDV--SNCGNLHA----LPQGIAKLINLRHLINEGTPLL 552 (826)
Q Consensus 503 ~~~~-----lp~~i~~L~~L~~L~L--~~~~~~~~----lp~~i~~L~~L~~L~l~~~~l~ 552 (826)
++. +...+...++|++|+| ++|.+... +...+...++|++|++++|.+.
T Consensus 105 -i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 105 -ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp -CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred -CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 543 5667888899999999 78885433 4455667789999999998775
No 219
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.0011 Score=70.82 Aligned_cols=180 Identities=14% Similarity=0.144 Sum_probs=98.6
Q ss_pred CccccchHHHHHHHHHHcCCCC-------CCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSS-------QEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEI 150 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 150 (826)
.++.|.++.+++|.+.+.-+-. -+-..++-|.++|++|.|||+||+++++... .. .+.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~--~~---~~~v~~s~l~s-- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG--AN---FIFSPASGIVD-- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT--CE---EEEEEGGGTCC--
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC--CC---EEEEehhhhcc--
Confidence 4578999888888776532100 0123457899999999999999999998432 22 23444333111
Q ss_pred HHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCC-------C---hh----hHHHHHhhhcC--CCCC
Q 003367 151 RVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSG-------N---PT----KWEELVSTLKF--GSPE 214 (826)
Q Consensus 151 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-------~---~~----~~~~l~~~~~~--~~~~ 214 (826)
.... .....+...+...-...+++|++|++..- . .. ....++..+.. ...+
T Consensus 254 ------------k~~G-ese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 320 (437)
T 4b4t_L 254 ------------KYIG-ESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQ 320 (437)
T ss_dssp ------------SSSS-HHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTS
T ss_pred ------------ccch-HHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 0000 00111222222223467899999999431 0 01 12233333332 2345
Q ss_pred cEEEEecccHHHHhh--c---cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCch
Q 003367 215 SRILVTTRKEDVAKM--M---RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPL 282 (826)
Q Consensus 215 s~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPL 282 (826)
..||.||........ . .-+..+.+..-+.++-.++|..+...-.. ....++ ..+++.+.|.--
T Consensus 321 vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~dl----~~lA~~t~G~sG 388 (437)
T 4b4t_L 321 TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFDF----EAAVKMSDGFNG 388 (437)
T ss_dssp SEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCCH----HHHHHTCCSCCH
T ss_pred eEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccCH----HHHHHhCCCCCH
Confidence 567777776543221 1 12557888777777777888766543221 111223 457778877543
No 220
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.56 E-value=0.0007 Score=67.91 Aligned_cols=184 Identities=17% Similarity=0.163 Sum_probs=92.5
Q ss_pred CCccccchHHHHHHHHHHc---CCCC---CCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHH
Q 003367 77 VSKVRGRDEEKKTIIDLLL---GSSS---QEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEI 150 (826)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 150 (826)
-.+++|.+..++++.+.+. .... -+....+-|.|+|++|+||||+|+.+++.. ... .+.++.+.-.+
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~--~~~---~~~i~~~~~~~-- 83 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA--KVP---FFTISGSDFVE-- 83 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH--TCC---EEEECSCSSTT--
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc--CCC---EEEEeHHHHHH--
Confidence 3568999988877765532 2110 001123458899999999999999999843 222 23333222110
Q ss_pred HHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCC----------Ch----hhHHHHHhhhcC--CCCC
Q 003367 151 RVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSG----------NP----TKWEELVSTLKF--GSPE 214 (826)
Q Consensus 151 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------~~----~~~~~l~~~~~~--~~~~ 214 (826)
...+. ....+...+.......+.++++|++..- .. .....+...+.. ...+
T Consensus 84 --------~~~~~-----~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (257)
T 1lv7_A 84 --------MFVGV-----GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 150 (257)
T ss_dssp --------SCCCC-----CHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSC
T ss_pred --------Hhhhh-----hHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCC
Confidence 00000 0112222333333456779999998210 00 112223333322 2334
Q ss_pred cEEEEecccHHHH-hhc----cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCC-CchhHH
Q 003367 215 SRILVTTRKEDVA-KMM----RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNG-LPLAAK 285 (826)
Q Consensus 215 s~iivTtR~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g-lPLal~ 285 (826)
..||.||...... ..+ .....+.+...+.++-.+++..+.-... ..... ....++..+.| .+--|.
T Consensus 151 ~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~-l~~~~----~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 151 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-LAPDI----DAAIIARGTPGFSGADLA 222 (257)
T ss_dssp EEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTC----CHHHHHHTCTTCCHHHHH
T ss_pred EEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC-CCccc----cHHHHHHHcCCCCHHHHH
Confidence 5667777654321 111 1234677777777777777776643211 11111 12346677777 554443
No 221
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.0017 Score=69.16 Aligned_cols=179 Identities=17% Similarity=0.138 Sum_probs=96.9
Q ss_pred CccccchHHHHHHHHHHcC----CC---CCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHH
Q 003367 78 SKVRGRDEEKKTIIDLLLG----SS---SQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEI 150 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~----~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 150 (826)
.++.|.++.+++|.+.+.- +. .-+-..++-|.++|++|.|||+||+++++... .. .+.+..+.-.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~--~~---fi~vs~s~L~s-- 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD--AT---FIRVIGSELVQ-- 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT--CE---EEEEEGGGGCC--
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC--CC---eEEEEhHHhhc--
Confidence 4688999998888775421 10 00123567899999999999999999998432 22 23344332110
Q ss_pred HHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCC--------h--h----hHHHHHhhhcCC--CCC
Q 003367 151 RVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGN--------P--T----KWEELVSTLKFG--SPE 214 (826)
Q Consensus 151 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~--~----~~~~l~~~~~~~--~~~ 214 (826)
.... .....+...+...-...+++|++|++...- . . ....++..+... ..+
T Consensus 282 ------------k~vG-esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 348 (467)
T 4b4t_H 282 ------------KYVG-EGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGN 348 (467)
T ss_dssp ------------CSSS-HHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTT
T ss_pred ------------ccCC-HHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCc
Confidence 0000 011112222233334678999999994310 0 0 112223333322 234
Q ss_pred cEEEEecccHHHH-----hhccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCc
Q 003367 215 SRILVTTRKEDVA-----KMMRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLP 281 (826)
Q Consensus 215 s~iivTtR~~~v~-----~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glP 281 (826)
..||.||...... +...-+..+.+...+.++-.++|+.+...-.. ...-++ +.|++.|.|.-
T Consensus 349 ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l-~~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 349 IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV-ERGIRW----ELISRLCPNST 415 (467)
T ss_dssp EEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB-CSSCCH----HHHHHHCCSCC
T ss_pred EEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC-CCCCCH----HHHHHHCCCCC
Confidence 4556677644322 11133667888888888888888776533211 111223 44777787754
No 222
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.53 E-value=0.00089 Score=72.75 Aligned_cols=179 Identities=16% Similarity=0.142 Sum_probs=96.8
Q ss_pred CccccchHHHHHHHHHHcCCCC------CCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSS------QEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIR 151 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 151 (826)
.+++|.++.++++.+....-.. -+..-.+-|.|+|++|+|||+||++++... ... .+.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~--~~~---f~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA--NVP---FFHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH--TCC---EEEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc--CCC---eeeCCHHHHHHH--
Confidence 5689999887777665431100 011123458899999999999999999843 222 233443322110
Q ss_pred HHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCCh--------------hhHHHHHhhhcC--CCCCc
Q 003367 152 VAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNP--------------TKWEELVSTLKF--GSPES 215 (826)
Q Consensus 152 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--------------~~~~~l~~~~~~--~~~~s 215 (826)
+.+ .........+.......+.+|+||++..-.. .....+...+.. ...+.
T Consensus 89 --------~~g-----~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 89 --------FVG-----VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp --------CTT-----HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred --------Hhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE
Confidence 000 0112223334444456789999999943110 122333333321 12355
Q ss_pred EEEEecccHHHHhh--c---cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCc
Q 003367 216 RILVTTRKEDVAKM--M---RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLP 281 (826)
Q Consensus 216 ~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glP 281 (826)
.||.||........ . .-...+.+...+.++-.+++..++..... ....+ ...+++.+.|..
T Consensus 156 iVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l-~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 156 IVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL-AEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCC
T ss_pred EEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC-cchhh----HHHHHHhcCCCc
Confidence 67777766543221 1 12347788887777777888766533211 11111 234778888877
No 223
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.52 E-value=7e-05 Score=74.73 Aligned_cols=81 Identities=25% Similarity=0.257 Sum_probs=58.3
Q ss_pred cCCCCccEEEccCCCCcc--ccchhhcCCCCCcEEeccCCCCCcccchhhhccc--CCCeeeecCcccc-cCCc------
Q 003367 488 KKLKHLRYLNLSNNDAIY--ELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLI--NLRHLINEGTPLL-YLPK------ 556 (826)
Q Consensus 488 ~~l~~L~~L~Ls~~~~~~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~--~L~~L~l~~~~l~-~lp~------ 556 (826)
.++++|++|+|++|.+.+ .+|..+..+++|++|+|++|.+.+ + ..+..+. +|++|++++|++. .+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-E-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-G-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-c-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 467889999999998433 445667789999999999988543 3 3455555 8999999999886 3442
Q ss_pred -cCCCCCCCCcCCce
Q 003367 557 -GLERLTCLRTLSEF 570 (826)
Q Consensus 557 -~i~~L~~L~~L~~~ 570 (826)
.+..+++|+.|+..
T Consensus 245 ~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 245 AIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHCTTCCEESSC
T ss_pred HHHHHCcccCeECCc
Confidence 25667777777643
No 224
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.52 E-value=0.00082 Score=79.01 Aligned_cols=156 Identities=15% Similarity=0.221 Sum_probs=85.5
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhccccccc----CCCcEEE-EEeCCCCCHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDA----HFDKRIW-VCFSDPVDEIRV 152 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~w-v~~~~~~~~~~~ 152 (826)
..++||+++++++.+.|... ...-+.|+|.+|+||||+|+.+++...... .....+| ++++.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------
T ss_pred CCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------
Confidence 45899999999999999653 234578999999999999999998432111 1122222 111110
Q ss_pred HHHHHHHhcccchhhhhHHH-HHHHHHHHhcCCceeEEeccCCCC--------ChhhHHHHHhhhcCCCCCcEEEEeccc
Q 003367 153 AKAILESFRDVVSAVAAFDT-LLRHIEKSVKGKKFLLVLDDVWSG--------NPTKWEELVSTLKFGSPESRILVTTRK 223 (826)
Q Consensus 153 ~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~k~~LlVlDdv~~~--------~~~~~~~l~~~~~~~~~~s~iivTtR~ 223 (826)
+... ......+. +...+......++.+|++|+++.- ...+...+...+.. ..+..+|.+|..
T Consensus 254 -------~~~~-~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~ 324 (758)
T 1r6b_X 254 -------LAGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTY 324 (758)
T ss_dssp --------CCC-CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECH
T ss_pred -------hccc-cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCc
Confidence 0000 00111122 222233333446789999999532 11111222222222 234566666665
Q ss_pred HHHHhhc-------cccceEEccCCCCchhHHHHHHhh
Q 003367 224 EDVAKMM-------RTTSMILLAKLPDNDCWSLFSQIA 254 (826)
Q Consensus 224 ~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~a 254 (826)
....... .....+.+...+.++..+++....
T Consensus 325 ~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 4432111 112368899999999888887643
No 225
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.48 E-value=0.00013 Score=85.55 Aligned_cols=155 Identities=20% Similarity=0.303 Sum_probs=88.6
Q ss_pred CccccchHHHHHHHHHHcCCCCC---CCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQ---EKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAK 154 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 154 (826)
..++|.+..++.+...+...... .......+.++|++|+|||++|+++++.. ...-...+.++++.-.+.....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l--~~~~~~~i~i~~s~~~~~~~~~- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI--FGDEESMIRIDMSEYMEKHSTS- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH--HSCTTCEEEEEGGGGCSSCCCC-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh--cCCCcceEEEechhcccccccc-
Confidence 45899999998888877643210 11222369999999999999999999843 1222334556654321110000
Q ss_pred HHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCC-----------CCCcEEEEeccc
Q 003367 155 AILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFG-----------SPESRILVTTRK 223 (826)
Q Consensus 155 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~-----------~~~s~iivTtR~ 223 (826)
...+...++ ....-+|+||++..-.......+...+..+ ....+||+||..
T Consensus 568 ---------------~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 568 ---------------GGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ------------------CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ---------------cchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 011111111 233458999999666666666666655432 235688888873
Q ss_pred -----HHH----Hhhc------cccceEEccCCCCchhHHHHHHh
Q 003367 224 -----EDV----AKMM------RTTSMILLAKLPDNDCWSLFSQI 253 (826)
Q Consensus 224 -----~~v----~~~~------~~~~~~~l~~L~~~~~~~lf~~~ 253 (826)
..+ ...+ .-...+.+.+++.++..+++...
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 111 1111 11247788888888777776654
No 226
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.42 E-value=0.00027 Score=82.94 Aligned_cols=147 Identities=18% Similarity=0.211 Sum_probs=79.7
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhccccccc---C-CCc-EEEEEeCCCCCHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDA---H-FDK-RIWVCFSDPVDEIRV 152 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~-f~~-~~wv~~~~~~~~~~~ 152 (826)
..++||+++++++...+.... ..-|.++|++|+|||++|+.+++...... . ... ++.++.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------
Confidence 459999999999999996532 23478999999999999999998531110 0 111 111221
Q ss_pred HHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccHHHHhh---
Q 003367 153 AKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKEDVAKM--- 229 (826)
Q Consensus 153 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~~v~~~--- 229 (826)
.....+. .... +...+......++.+|++|.- . +....+...+. ....++|.||........
T Consensus 245 ----g~~~~G~--~e~~---l~~~~~~~~~~~~~iLfiD~~--~--~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~ 309 (758)
T 3pxi_A 245 ----GTKYRGE--FEDR---LKKVMDEIRQAGNIILFIDAA--I--DASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (758)
T ss_dssp --------------CTT---HHHHHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred ----cccccch--HHHH---HHHHHHHHHhcCCEEEEEcCc--h--hHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhc
Confidence 0000000 0111 222233333467889999922 1 11122333332 234566666665441110
Q ss_pred ----ccccceEEccCCCCchhHHHHHHhh
Q 003367 230 ----MRTTSMILLAKLPDNDCWSLFSQIA 254 (826)
Q Consensus 230 ----~~~~~~~~l~~L~~~~~~~lf~~~a 254 (826)
...-..+.+...+.++..+++....
T Consensus 310 d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 0112468899999999999998654
No 227
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.39 E-value=0.0013 Score=69.24 Aligned_cols=179 Identities=15% Similarity=0.123 Sum_probs=95.0
Q ss_pred CccccchHHHHHHHHHHcC----CC---CCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHH
Q 003367 78 SKVRGRDEEKKTIIDLLLG----SS---SQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEI 150 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~----~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 150 (826)
.++.|.++.+++|.+.+.- +. .-+-..++-|.++|++|.|||.||+++++... .. .+.++.+.-.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~--~~---fi~v~~s~l~--- 253 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS--AT---FLRIVGSELI--- 253 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT--CE---EEEEESGGGC---
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC--CC---EEEEEHHHhh---
Confidence 4578999888888775532 10 00223457799999999999999999998432 22 2233332211
Q ss_pred HHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCC--------C--h----hhHHHHHhhhcC--CCCC
Q 003367 151 RVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSG--------N--P----TKWEELVSTLKF--GSPE 214 (826)
Q Consensus 151 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--------~--~----~~~~~l~~~~~~--~~~~ 214 (826)
..... .....+...+...-...+++|++|++... . . .....++..+.. ...+
T Consensus 254 -----------sk~vG-esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ 321 (437)
T 4b4t_I 254 -----------QKYLG-DGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGD 321 (437)
T ss_dssp -----------CSSSS-HHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSS
T ss_pred -----------hccCc-hHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCC
Confidence 00000 00111122222222467899999998421 0 0 112223333322 2334
Q ss_pred cEEEEecccHHHHhh--c---cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCc
Q 003367 215 SRILVTTRKEDVAKM--M---RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLP 281 (826)
Q Consensus 215 s~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glP 281 (826)
..||.||........ + .-+..+.+..-+.++-.++|..+.-.-. ....-++ +.|++.+.|.-
T Consensus 322 ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~-l~~dvdl----~~LA~~T~GfS 388 (437)
T 4b4t_I 322 VKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN-LSEDVNL----ETLVTTKDDLS 388 (437)
T ss_dssp EEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC-BCSCCCH----HHHHHHCCSCC
T ss_pred EEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC-CCCcCCH----HHHHHhCCCCC
Confidence 456667765543322 1 2245677877777777888877653221 1122233 44677777754
No 228
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.00078 Score=71.93 Aligned_cols=179 Identities=15% Similarity=0.138 Sum_probs=95.1
Q ss_pred CccccchHHHHHHHHHHcC----CC---CCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHH
Q 003367 78 SKVRGRDEEKKTIIDLLLG----SS---SQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEI 150 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~----~~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 150 (826)
.++.|.++.+++|.+.+.. +. .-+-..++-|.++|++|.|||.||+++++... .. .+.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~--~~---f~~v~~s~l~~-- 253 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN--AT---FLKLAAPQLVQ-- 253 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT--CE---EEEEEGGGGCS--
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC--CC---EEEEehhhhhh--
Confidence 4588999998888775422 10 00223467899999999999999999998432 22 23344332110
Q ss_pred HHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCC------CCh----h----hHHHHHhhhcCC--CCC
Q 003367 151 RVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWS------GNP----T----KWEELVSTLKFG--SPE 214 (826)
Q Consensus 151 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~------~~~----~----~~~~l~~~~~~~--~~~ 214 (826)
.... .....+...+...-...+++|++|++.. ... . ....++..+... ..+
T Consensus 254 ------------~~vG-ese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 320 (434)
T 4b4t_M 254 ------------MYIG-EGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDR 320 (434)
T ss_dssp ------------SCSS-HHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCS
T ss_pred ------------cccc-hHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCC
Confidence 0000 0001111112222234689999999831 000 0 112233334332 234
Q ss_pred cEEEEecccHHHHhh-----ccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCc
Q 003367 215 SRILVTTRKEDVAKM-----MRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLP 281 (826)
Q Consensus 215 s~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glP 281 (826)
..||.||........ ..-+..+.++.-+.++-.++|..+.-.-.. ...-++ +.|++.+.|.-
T Consensus 321 ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvdl----~~lA~~t~G~s 387 (434)
T 4b4t_M 321 VKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDINW----QELARSTDEFN 387 (434)
T ss_dssp SEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCCH----HHHHHHCSSCC
T ss_pred EEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCCH----HHHHHhCCCCC
Confidence 456667765543221 123567888887878888888766533221 111123 44677777754
No 229
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.36 E-value=0.0013 Score=70.77 Aligned_cols=278 Identities=10% Similarity=0.092 Sum_probs=139.9
Q ss_pred hhhhccCCCCcEEecccccccccccccccc-ccccCCCCccEEEccCCCCccccchhhcCCCCCcEEeccCCCCCcccch
Q 003367 455 PSLFDRLTCLRTLCLRCHERHFCLSIARLP-RNIKKLKHLRYLNLSNNDAIYELPEALCDLCNLQTLDVSNCGNLHALPQ 533 (826)
Q Consensus 455 ~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~~~~~lp~ 533 (826)
...|..+.+|+.+.+. . .+..++ ..|..+.+|+.+.+..+. ...-...+..+.+|+.+.+..+ +..+..
T Consensus 107 ~~aF~~c~~L~~i~~~-----~--~~~~I~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~--~~~I~~ 176 (394)
T 4gt6_A 107 RQAFMFCSELTDIPIL-----D--SVTEIDSEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS--VTAIEE 176 (394)
T ss_dssp TTTTTTCTTCCBCGGG-----T--TCSEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT--CCEECT
T ss_pred hhhchhcccceeeccC-----C--ccceehhhhhhhhccccccccccee-eeecccceecccccccccccce--eeEecc
Confidence 4678888888888775 2 233443 467889999999997653 3333356888899999998764 334443
Q ss_pred hhhcccCCCeeeecCcccccCCccCCCCCCCCcCCceeeCcccCcCcccCcccccccccCCCceEEcccCCCCChhhhhh
Q 003367 534 GIAKLINLRHLINEGTPLLYLPKGLERLTCLRTLSEFTVSDIENVSKAGSLQCLQNLNHLQGSLVLTALGNVTDVGEAKS 613 (826)
Q Consensus 534 ~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~l~~~~l~~~~~~~~~~~ 613 (826)
..-...+|+.+.+..+-..--...+..+.+|........... .. ......... .+......
T Consensus 177 ~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~-~~-~~~~~~~~~-----~~~~~~~~------------ 237 (394)
T 4gt6_A 177 RAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYP-AI-DNVLYEKSA-----NGDYALIR------------ 237 (394)
T ss_dssp TTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSC-BS-SSCEEEECT-----TSCEEEEE------------
T ss_pred ccccccceeEEEECCcccccccchhhhccccceecccccccc-cc-cceeecccc-----cccccccc------------
Confidence 332346788887764432222333555555554322111110 00 000000000 00000000
Q ss_pred hhccCCCcCCceeeEeecCCCcccccchHHHhhcCCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC
Q 003367 614 AKLESKKHLVCLRLEFIKLGRVELVDKDNEVLEALQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP 693 (826)
Q Consensus 614 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~ 693 (826)
......+....+.. .. ..-....+..+.+|+.+.+..+. ..+....+.++++|+.+.+... + ..++
T Consensus 238 --~~~~~~~~~~~ip~------~v---~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~~-i-~~I~ 303 (394)
T 4gt6_A 238 --YPSQREDPAFKIPN------GV---ARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSSR-I-TELP 303 (394)
T ss_dssp --CCTTCCCSEEECCT------TE---EEECTTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-C-CEEC
T ss_pred --cccccccceEEcCC------cc---eEcccceeeecccccEEeccccc-ceecCcccccccccccccCCCc-c-cccC
Confidence 00001111111100 00 00001235566777777775443 2233556677888888887532 2 2343
Q ss_pred --CCCCCCccceeeccccccceEeCcccccCCCCccccCccCcCCCccceeeccccccccccccccccccCcCCCCccce
Q 003367 694 --SLGRLPSLESLVVEALSSVRRVGNEFLGIESDDISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHR 771 (826)
Q Consensus 694 --~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~ 771 (826)
.+.++.+|+.+.|.. .++.++... +.++.+|+.+.+... ++.+. ...+..+++|+.
T Consensus 304 ~~aF~~c~~L~~i~lp~--~v~~I~~~a-------------F~~C~~L~~i~ip~s--v~~I~-----~~aF~~C~~L~~ 361 (394)
T 4gt6_A 304 ESVFAGCISLKSIDIPE--GITQILDDA-------------FAGCEQLERIAIPSS--VTKIP-----ESAFSNCTALNN 361 (394)
T ss_dssp TTTTTTCTTCCEEECCT--TCCEECTTT-------------TTTCTTCCEEEECTT--CCBCC-----GGGGTTCTTCCE
T ss_pred ceeecCCCCcCEEEeCC--cccEehHhH-------------hhCCCCCCEEEECcc--cCEEh-----HhHhhCCCCCCE
Confidence 677788888888852 344444432 235778888887542 33332 245667888888
Q ss_pred eeecCCCCCCCCCCCCcccCCcceEEEcc
Q 003367 772 LKLDGCHKLKALPDHLLLTTKMNELTMNW 800 (826)
Q Consensus 772 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 800 (826)
+++.++... + ..+..++.|+.+.+..
T Consensus 362 i~~~~~~~~--~-~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 362 IEYSGSRSQ--W-NAISTDSGLQNLPVAP 387 (394)
T ss_dssp EEESSCHHH--H-HTCBCCCCC-------
T ss_pred EEECCceee--h-hhhhccCCCCEEEeCC
Confidence 888875321 1 2344566777776653
No 230
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.32 E-value=0.002 Score=65.81 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=23.6
Q ss_pred CCccEEEEEecCCCcHHHHHHHHhccc
Q 003367 103 MSLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 103 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
..++.+.++|++|+|||+||+++++..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999999843
No 231
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.31 E-value=0.00042 Score=72.59 Aligned_cols=151 Identities=14% Similarity=0.119 Sum_probs=85.2
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
..++|+++.++.+...+.... -|.++|.+|+|||+||+.+++.. ... ...+.+.......++..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~--------~vll~G~pGtGKT~la~~la~~~--~~~---~~~i~~~~~~~~~~l~g--- 90 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG--------HILLEGVPGLAKTLSVNTLAKTM--DLD---FHRIQFTPDLLPSDLIG--- 90 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--------CEEEESCCCHHHHHHHHHHHHHT--TCC---EEEEECCTTCCHHHHHE---
T ss_pred cceeCcHHHHHHHHHHHHcCC--------eEEEECCCCCcHHHHHHHHHHHh--CCC---eEEEecCCCCChhhcCC---
Confidence 458899999999888876532 48899999999999999999833 222 23344443333332211
Q ss_pred HHhcccchhhhhHHHHHHHHHHHhc-C--CceeEEeccCCCCChhhHHHHHhhhcCC-----------CCCcEEEEeccc
Q 003367 158 ESFRDVVSAVAAFDTLLRHIEKSVK-G--KKFLLVLDDVWSGNPTKWEELVSTLKFG-----------SPESRILVTTRK 223 (826)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~l~~~l~-~--k~~LlVlDdv~~~~~~~~~~l~~~~~~~-----------~~~s~iivTtR~ 223 (826)
...... ..... ... + ...++++|++..-.......+...+... .....||.|+..
T Consensus 91 -~~~~~~-~~~~~---------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np 159 (331)
T 2r44_A 91 -TMIYNQ-HKGNF---------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNP 159 (331)
T ss_dssp -EEEEET-TTTEE---------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECT
T ss_pred -ceeecC-CCCce---------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCC
Confidence 000000 00000 001 1 1258999999665555555555544321 234456656653
Q ss_pred HH------HHhh-ccc-cceEEccCCCCchhHHHHHHhhh
Q 003367 224 ED------VAKM-MRT-TSMILLAKLPDNDCWSLFSQIAF 255 (826)
Q Consensus 224 ~~------v~~~-~~~-~~~~~l~~L~~~~~~~lf~~~a~ 255 (826)
.. +... ..- ...+.+...+.++-.+++...+.
T Consensus 160 ~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 160 VEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp TCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred CcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 21 1111 111 22578888888888888877653
No 232
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.23 E-value=0.00044 Score=81.35 Aligned_cols=133 Identities=17% Similarity=0.244 Sum_probs=73.7
Q ss_pred CccccchHHHHHHHHHHcCCCC---CCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSS---QEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAK 154 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 154 (826)
..++|.++.++.+...+..... ..+.....+.++|++|+|||++|+.+++.. . ...+.++++.......
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l--~---~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH--T---CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh--c---CCEEEEechhhcchhh---
Confidence 4588999999888877653211 011223478999999999999999999843 1 2334455543221100
Q ss_pred HHHHHhcccchhhhhH---HHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCCC-----------CCcEEEEe
Q 003367 155 AILESFRDVVSAVAAF---DTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGS-----------PESRILVT 220 (826)
Q Consensus 155 ~i~~~l~~~~~~~~~~---~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~-----------~~s~iivT 220 (826)
+...++.. +..... ..+...++ +....+|+||++..-..+....+...+..+. ....||.|
T Consensus 530 -~~~l~g~~-~g~~g~~~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~t 604 (758)
T 1r6b_X 530 -VSRLIGAP-PGYVGFDQGGLLTDAVI---KHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMT 604 (758)
T ss_dssp -CSSSCCCC-SCSHHHHHTTHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEE
T ss_pred -HhhhcCCC-CCCcCccccchHHHHHH---hCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEe
Confidence 00011111 111111 11222222 2446799999996656666666666654321 34557777
Q ss_pred ccc
Q 003367 221 TRK 223 (826)
Q Consensus 221 tR~ 223 (826)
|..
T Consensus 605 sN~ 607 (758)
T 1r6b_X 605 TNA 607 (758)
T ss_dssp ECS
T ss_pred cCc
Confidence 764
No 233
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.17 E-value=0.0013 Score=64.21 Aligned_cols=85 Identities=20% Similarity=0.126 Sum_probs=53.3
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhccc------------chhhhhHHH
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDV------------VSAVAAFDT 172 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~------------~~~~~~~~~ 172 (826)
-.++.|+|.+|+||||||..++. . .-..++|++.....+...+.. +.+.++.. .....+..+
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~--~---~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL--L---SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--H---HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--H---cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 35899999999999999999987 1 124678888776555554443 33332211 111122233
Q ss_pred HHHHHHHHhcCCceeEEeccCCC
Q 003367 173 LLRHIEKSVKGKKFLLVLDDVWS 195 (826)
Q Consensus 173 ~~~~l~~~l~~k~~LlVlDdv~~ 195 (826)
....++..+..+.-+||+|.+..
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcHH
Confidence 44555555544577999999843
No 234
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.16 E-value=0.007 Score=64.52 Aligned_cols=56 Identities=20% Similarity=0.228 Sum_probs=28.3
Q ss_pred CCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC--CCCCCCccceeecc
Q 003367 649 QPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP--SLGRLPSLESLVVE 707 (826)
Q Consensus 649 ~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~ 707 (826)
..+..|+.+.+..+ ++.+....+..+.+|+.+.+..+ + ..++ .+.++++|+.+.+.
T Consensus 237 ~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i-~~i~~~aF~~c~~L~~i~l~ 294 (379)
T 4h09_A 237 YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-V-KTVPYLLCSGCSNLTKVVMD 294 (379)
T ss_dssp TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-C-SEECTTTTTTCTTCCEEEEC
T ss_pred cCCccceEEEcCCC-ccEeCccccceeehhcccccccc-c-eecccccccccccccccccc
Confidence 34555666666443 33333444555666666666433 1 1222 45556666666654
No 235
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.15 E-value=9.5e-05 Score=74.93 Aligned_cols=53 Identities=23% Similarity=0.310 Sum_probs=35.9
Q ss_pred CCccccchHHHHHHHHHHcCCCCC------CCCCccEEEEEecCCCcHHHHHHHHhccc
Q 003367 77 VSKVRGRDEEKKTIIDLLLGSSSQ------EKMSLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
-.+++|.++.++.+.+.+..-... +....+-|.|+|++|+|||++|+++++..
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 356899998888777765410000 00112347899999999999999999843
No 236
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.10 E-value=0.00083 Score=79.80 Aligned_cols=135 Identities=17% Similarity=0.278 Sum_probs=73.9
Q ss_pred ccccchHHHHHHHHHHcCCCC---CCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHH
Q 003367 79 KVRGRDEEKKTIIDLLLGSSS---QEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKA 155 (826)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 155 (826)
.++|.+..++.+...+..... ..+.....+.|+|+.|+|||++|+.+++... ..-...+.++++.-.....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~--~~~~~~i~i~~~~~~~~~~---- 632 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF--DTEEAMIRIDMTEYMEKHA---- 632 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH--SSGGGEEEECTTTCCSSGG----
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc--CCCCcEEEEechhccchhH----
Confidence 479999999988887754321 0112235789999999999999999998431 1112344455443222100
Q ss_pred HHHHhcccchhh---hhHHHHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCCC-----------CCcEEEEec
Q 003367 156 ILESFRDVVSAV---AAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGS-----------PESRILVTT 221 (826)
Q Consensus 156 i~~~l~~~~~~~---~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~-----------~~s~iivTt 221 (826)
...+.+..+.. .....+...+.. ...-+|+||++..-+......+...+..+. .+..||+||
T Consensus 633 -~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ts 708 (854)
T 1qvr_A 633 -VSRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTS 708 (854)
T ss_dssp -GGGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEEC
T ss_pred -HHHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEec
Confidence 01111000000 000112222222 334689999996666666677777766431 244588887
Q ss_pred cc
Q 003367 222 RK 223 (826)
Q Consensus 222 R~ 223 (826)
..
T Consensus 709 n~ 710 (854)
T 1qvr_A 709 NL 710 (854)
T ss_dssp CT
T ss_pred Cc
Confidence 74
No 237
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.10 E-value=0.00056 Score=76.43 Aligned_cols=162 Identities=15% Similarity=0.240 Sum_probs=78.2
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
.+++|.++..+.+.+.+.-..-.......++.|+|++|+||||||+.++... ...| ..+.+....+...+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l--~~~~---~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL--GRKF---VRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH--TCEE---EEECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc--CCCe---EEEEecccchhhhhhhHHH
Confidence 4588988887777554331110011145689999999999999999999843 2222 2233333222111111111
Q ss_pred HHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCChh----hHHHHHhhhcCCC---------------CCcEEE
Q 003367 158 ESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGNPT----KWEELVSTLKFGS---------------PESRIL 218 (826)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~----~~~~l~~~~~~~~---------------~~s~ii 218 (826)
...+.. .......+.. .....-+++||++..-... ....+...+.... ....||
T Consensus 156 ~~ig~~------~~~~~~~~~~-a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 156 TYVGAM------PGRIIQGMKK-AGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp --------------CHHHHHHT-TCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred HHhccC------chHHHHHHHH-hhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 111100 0011111222 1223348889999543322 1233444332211 334677
Q ss_pred EecccHH-----HHhhccccceEEccCCCCchhHHHHHHhh
Q 003367 219 VTTRKED-----VAKMMRTTSMILLAKLPDNDCWSLFSQIA 254 (826)
Q Consensus 219 vTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~a 254 (826)
.||.... +...+ ..+.+.+++.++-.+++..+.
T Consensus 229 ~ttN~~~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 229 ATANNLATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EECSSTTTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred eccCccccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 7776533 22222 467888998888888876653
No 238
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.08 E-value=0.0088 Score=62.71 Aligned_cols=157 Identities=11% Similarity=-0.016 Sum_probs=101.2
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHH-HHhc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIE-KSVK 182 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~ 182 (826)
-.++..++|..|.||++.|.++..... ...|+....+.+....+..++... +. .-+-
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~---------------------~~~~plf 74 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDWNAIFSL---------------------CQAMSLF 74 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCHHHHHHH---------------------HHHHHHC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCHHHHHHH---------------------hcCcCCc
Confidence 346899999999999999999987432 123432222223333333332222 11 1134
Q ss_pred CCceeEEeccCCC-CChhhHHHHHhhhcCCCCCcEEEEeccc-------HHHHhhc-cccceEEccCCCCchhHHHHHHh
Q 003367 183 GKKFLLVLDDVWS-GNPTKWEELVSTLKFGSPESRILVTTRK-------EDVAKMM-RTTSMILLAKLPDNDCWSLFSQI 253 (826)
Q Consensus 183 ~k~~LlVlDdv~~-~~~~~~~~l~~~~~~~~~~s~iivTtR~-------~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 253 (826)
+++-++|+|+++. -....++.+...+....+++.+|+++.. ..+...+ .....++..+++.++..+.+.+.
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 6677889999965 4556788888888776678887776643 2333332 23568899999999998888777
Q ss_pred hhcCCCcccchhhHHHHHHHHHhcCCCchhHHH
Q 003367 254 AFSGRTTEECQKLTDIGRMIADKCNGLPLAAKT 286 (826)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~ 286 (826)
+-..+...+ .+.++.+++.++|.+.++..
T Consensus 155 ~~~~g~~i~----~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 155 AKQLNLELD----DAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHTTCEEC----HHHHHHHHHSSTTCHHHHHH
T ss_pred HHHcCCCCC----HHHHHHHHHHhchHHHHHHH
Confidence 644332222 46678899999998877655
No 239
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.06 E-value=0.00022 Score=73.49 Aligned_cols=56 Identities=20% Similarity=0.193 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEe
Q 003367 84 DEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCF 143 (826)
Q Consensus 84 ~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 143 (826)
....+.+.+++..... ...+.+.|+|..|+|||+||.++++.... .....+.++++
T Consensus 134 ~~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v~~~~~ 189 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHELSE-KKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCEEEEEH
T ss_pred HHHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEH
Confidence 3344555566654221 12467899999999999999999984320 22234555654
No 240
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.03 E-value=0.0046 Score=71.23 Aligned_cols=180 Identities=13% Similarity=0.116 Sum_probs=97.7
Q ss_pred CccccchHHHHHHHHHHc----CCCC---CCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHH
Q 003367 78 SKVRGRDEEKKTIIDLLL----GSSS---QEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEI 150 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~----~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 150 (826)
.++.|.++.+++|.+.+. .+.- -+-..++-|.++|++|.|||+||+++++.. ..+ .+.|+.+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el--g~~---~~~v~~~------ 272 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--GAF---FFLINGP------ 272 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT--TCE---EEEEEHH------
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCe---EEEEEhH------
Confidence 457888888877776542 2210 122356789999999999999999999843 222 2344322
Q ss_pred HHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCC-------hh----hHHHHHhhhcCC--CCCcEE
Q 003367 151 RVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGN-------PT----KWEELVSTLKFG--SPESRI 217 (826)
Q Consensus 151 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------~~----~~~~l~~~~~~~--~~~s~i 217 (826)
++..... ......+...+.......+.+|++|++..-- .+ ....+...+... ..+..|
T Consensus 273 ----~l~sk~~-----gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V 343 (806)
T 3cf2_A 273 ----EIMSKLA-----GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp ----HHHSSCT-----THHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE
T ss_pred ----Hhhcccc-----hHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE
Confidence 1111111 0111223334444446778999999994310 01 112233222221 233455
Q ss_pred EEecccHHHHh-hc----cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCch
Q 003367 218 LVTTRKEDVAK-MM----RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPL 282 (826)
Q Consensus 218 ivTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPL 282 (826)
|.||....... .+ .-...+++...+.++-.++|..+..... .....+ ...|++.+.|.--
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~-~~~dvd----l~~lA~~T~Gfsg 408 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK-LADDVD----LEQVANETHGHVG 408 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSE-ECTTCC----HHHHHHHCCSCCH
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCC-CCcccC----HHHHHHhcCCCCH
Confidence 66666543221 11 2355788888888888888877643211 111122 3457778887653
No 241
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.03 E-value=0.0018 Score=70.86 Aligned_cols=43 Identities=19% Similarity=0.238 Sum_probs=36.4
Q ss_pred ccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhccc
Q 003367 79 KVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
.++|+++.++.+...+.... -|.|+|++|+|||+||+.+++..
T Consensus 23 ~ivGq~~~i~~l~~al~~~~--------~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTC--------EEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhHHHHHHHHHHHHHHhcCC--------eeEeecCchHHHHHHHHHHHHHH
Confidence 47899999998888776532 58999999999999999999843
No 242
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.02 E-value=0.0021 Score=60.16 Aligned_cols=116 Identities=22% Similarity=0.136 Sum_probs=65.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCC---CCHHHHHHHHHHH-------hcccch----hhhhHHH
Q 003367 107 IISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDP---VDEIRVAKAILES-------FRDVVS----AVAAFDT 172 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~-------l~~~~~----~~~~~~~ 172 (826)
.|-|++-.|.||||.|-..+-. .-.+=..+.++.+... .....++..+.-. +.-... .......
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalR--A~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAAR--AVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHH--HHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 4666677779999999999873 3344345666655542 2233333333100 000000 1122233
Q ss_pred HHHHHHHHhcCCc-eeEEeccCCC---CChhhHHHHHhhhcCCCCCcEEEEecccH
Q 003367 173 LLRHIEKSVKGKK-FLLVLDDVWS---GNPTKWEELVSTLKFGSPESRILVTTRKE 224 (826)
Q Consensus 173 ~~~~l~~~l~~k~-~LlVlDdv~~---~~~~~~~~l~~~~~~~~~~s~iivTtR~~ 224 (826)
..+..++.+.+.+ =|||||++-. -..-..+.+...+........||+|+|..
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 4445555665444 4999999811 11234466777776666778999999985
No 243
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.01 E-value=0.00028 Score=71.39 Aligned_cols=67 Identities=18% Similarity=0.412 Sum_probs=43.4
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEe--CCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcC
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCF--SDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKG 183 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 183 (826)
+++.|+|++|+||||||.+++.. .-..+.|+++ .+..+. .. .+.+...+.+.+.+..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~----------~~------~~le~~l~~i~~~l~~ 182 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG----------YN------TDFNVFVDDIARAMLQ 182 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT----------CB------CCHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh----------hh------cCHHHHHHHHHHHHhh
Confidence 56789999999999999999974 1123556776 332111 00 2334445555555555
Q ss_pred CceeEEeccCC
Q 003367 184 KKFLLVLDDVW 194 (826)
Q Consensus 184 k~~LlVlDdv~ 194 (826)
.+ +||+|++.
T Consensus 183 ~~-LLVIDsI~ 192 (331)
T 2vhj_A 183 HR-VIVIDSLK 192 (331)
T ss_dssp CS-EEEEECCT
T ss_pred CC-EEEEeccc
Confidence 55 99999994
No 244
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.98 E-value=0.0093 Score=59.45 Aligned_cols=179 Identities=17% Similarity=0.162 Sum_probs=87.4
Q ss_pred CccccchHHHHHHHHHHcCCCCC------CCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQ------EKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIR 151 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 151 (826)
.+++|.++..+++.++...-... +-.-.+-+.|+|+.|+||||||+.++.... ...+.+... .
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~------~ 84 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS------D 84 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH------H
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHH------H
Confidence 46889887766665443210000 000122389999999999999999998432 223333321 1
Q ss_pred HHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCC----------Chhh----HHHHHhhhcCCCC--Cc
Q 003367 152 VAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSG----------NPTK----WEELVSTLKFGSP--ES 215 (826)
Q Consensus 152 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------~~~~----~~~l~~~~~~~~~--~s 215 (826)
+...... .....+...++..-.....++++|++..- .... ...+...+..+.. ..
T Consensus 85 ----~~~~~~~-----~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~ 155 (254)
T 1ixz_A 85 ----FVEMFVG-----VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAI 155 (254)
T ss_dssp ----HHHSCTT-----HHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCE
T ss_pred ----HHHHHhh-----HHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCE
Confidence 1111100 00111222222222345689999999210 0111 1223333332222 23
Q ss_pred EEEEecccHHHHhh-c----cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCc
Q 003367 216 RILVTTRKEDVAKM-M----RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLP 281 (826)
Q Consensus 216 ~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glP 281 (826)
.++.||..+.+... + .....+.+...+.++-.+++...+-+. ....... ...+++.+.|.-
T Consensus 156 i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~-~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 156 VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTS-CBCTTCC----HHHHHHTCTTCC
T ss_pred EEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCC-CCCcccC----HHHHHHHcCCCC
Confidence 44456665544321 1 224567888888888788887665221 1111111 234677777654
No 245
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.90 E-value=0.009 Score=63.66 Aligned_cols=126 Identities=13% Similarity=0.147 Sum_probs=79.5
Q ss_pred CCCCCCcCeEEEeccCCCCCCCCcccCccCCcEEEEecCCCCCCCC--CCCCCCccceeeccccccceEeCcccccCCCC
Q 003367 648 LQPSPDLEKLTICDYKSKIISPSWLMSLTELRMLNLQRCGKCEQLP--SLGRLPSLESLVVEALSSVRRVGNEFLGIESD 725 (826)
Q Consensus 648 l~~~~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 725 (826)
+..+.+|+.+.+..+ +..+....+..+.+|+.+.+..+ + ..++ .+.++.+|+.+.+.. .+..++...
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v-~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~a------ 281 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-V-TSIGSFLLQNCTALKTLNFYA--KVKTVPYLL------ 281 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-C-CEECTTTTTTCTTCCEEEECC--CCSEECTTT------
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-c-cEeCccccceeehhccccccc--cceeccccc------
Confidence 344567777777543 33333556677888999988765 2 2333 677788888888752 233333322
Q ss_pred ccccCccCcCCCccceeeccccccccccccccccccCcCCCCccceeeecCCCCCCCCCC-CCcccCCcceEEEc
Q 003367 726 DISLSSSSVVFPKLKFLEFRDMDEWEEWDYVISGQKDIKIMPRLHRLKLDGCHKLKALPD-HLLLTTKMNELTMN 799 (826)
Q Consensus 726 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~ 799 (826)
...+++|+.+.+.++ .++.+. ...+..+++|+.+.|.. .++.++. .+..+++|+++.+.
T Consensus 282 -------F~~c~~L~~i~l~~~-~i~~I~-----~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 282 -------CSGCSNLTKVVMDNS-AIETLE-----PRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp -------TTTCTTCCEEEECCT-TCCEEC-----TTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred -------ccccccccccccccc-ccceeh-----hhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence 236788888888654 344433 24566788899888865 3666655 35567888888774
No 246
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.90 E-value=0.014 Score=58.85 Aligned_cols=156 Identities=15% Similarity=0.200 Sum_probs=81.3
Q ss_pred CccccchHHHHHHHHHHcCCCCC-------CCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHH
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQ-------EKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEI 150 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 150 (826)
.++.|.++.+++|.+.+..+-.. +-.-.+-+.|+|++|.||||||+.++..... ..+++....-.+..
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMY 84 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSST
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhh
Confidence 46788888888877654211000 0011123999999999999999999984321 23444433211100
Q ss_pred HHHHHHHHHhcccchhhhhHH-HHHHHHHHHhcCCceeEEeccCCCCC-----------hhhHHHHHhhhcCCC--CCcE
Q 003367 151 RVAKAILESFRDVVSAVAAFD-TLLRHIEKSVKGKKFLLVLDDVWSGN-----------PTKWEELVSTLKFGS--PESR 216 (826)
Q Consensus 151 ~~~~~i~~~l~~~~~~~~~~~-~~~~~l~~~l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~~~~~~--~~s~ 216 (826)
..... .+...++..-...+.++++|++.... ......+...+..+. ...-
T Consensus 85 ----------------~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i 148 (274)
T 2x8a_A 85 ----------------VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVF 148 (274)
T ss_dssp ----------------THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEE
T ss_pred ----------------hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEE
Confidence 00001 11111222123457899999994310 011222333333222 2344
Q ss_pred EEEecccHHHHhh-----ccccceEEccCCCCchhHHHHHHhh
Q 003367 217 ILVTTRKEDVAKM-----MRTTSMILLAKLPDNDCWSLFSQIA 254 (826)
Q Consensus 217 iivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~a 254 (826)
++.+|..+.+... ..-+..+.+...+.++-.++|....
T Consensus 149 ~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 149 IMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 5566666554322 1235677888888888888887764
No 247
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.83 E-value=0.00071 Score=65.43 Aligned_cols=112 Identities=13% Similarity=-0.040 Sum_probs=64.3
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccch--hhhhHHHHHHHHHHHhc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVS--AVAAFDTLLRHIEKSVK 182 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~ 182 (826)
-.++.|+|..|.||||++..++.... .+-..++.+....... ....+++.++.... ......++.+.+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~--~~g~kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLE--YADVKYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH--HTTCCEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 36899999999999999999988443 3333445554433221 12234444442211 11223445555555444
Q ss_pred CCce-eEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccH
Q 003367 183 GKKF-LLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKE 224 (826)
Q Consensus 183 ~k~~-LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~ 224 (826)
+.++ +||+|.+..-+.+..+.+.. +.. .|-.||+|-+..
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDK 126 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSB
T ss_pred CCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEeccc
Confidence 4444 99999996544444444433 222 267899998843
No 248
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.79 E-value=0.0077 Score=64.08 Aligned_cols=51 Identities=25% Similarity=0.352 Sum_probs=35.8
Q ss_pred CccccchHHHHHHHHHHcC----CC--------------------CCCCCCccEEEEEecCCCcHHHHHHHHhcc
Q 003367 78 SKVRGRDEEKKTIIDLLLG----SS--------------------SQEKMSLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~----~~--------------------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
..++|.++.++.|...+.. .. .........|.++|++|+|||++|+.+++.
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHH
Confidence 3578999888888777620 00 000112345889999999999999999984
No 249
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.76 E-value=0.0055 Score=66.98 Aligned_cols=177 Identities=18% Similarity=0.172 Sum_probs=92.2
Q ss_pred cCCccccchHHHHHHHHHHc---CCCC---CCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCH
Q 003367 76 DVSKVRGRDEEKKTIIDLLL---GSSS---QEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDE 149 (826)
Q Consensus 76 ~~~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 149 (826)
.-.+++|.++.++++.+... .... -+-.-.+-|.|+|++|+||||||++++.... ...+.++.+.-...
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEM 103 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSS
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHh
Confidence 34568999988777665432 2110 0011123489999999999999999998432 23344443321100
Q ss_pred HHHHHHHHHHhcccchhhhhHHHHHHHHHHHhc----CCceeEEeccCCCCC----------hhhH----HHHHhhhcCC
Q 003367 150 IRVAKAILESFRDVVSAVAAFDTLLRHIEKSVK----GKKFLLVLDDVWSGN----------PTKW----EELVSTLKFG 211 (826)
Q Consensus 150 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~k~~LlVlDdv~~~~----------~~~~----~~l~~~~~~~ 211 (826)
. . ......+...++ ..+.++++|++..-. ...+ ..+...+..+
T Consensus 104 ----------~----~-----g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 104 ----------F----V-----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp ----------C----T-----THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC
T ss_pred ----------h----h-----hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc
Confidence 0 0 001112222232 235799999993210 1122 2333333322
Q ss_pred --CCCcEEEEecccHHHHhh--c---cccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCc
Q 003367 212 --SPESRILVTTRKEDVAKM--M---RTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLP 281 (826)
Q Consensus 212 --~~~s~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glP 281 (826)
..+..++.||..+.+... . .....+.+...+.++-.+++..++-.... .+... ...|++.+.|..
T Consensus 165 ~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l-~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 165 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-AEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCC-CCSST----THHHHTTSCSCC
T ss_pred ccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCC-ChHHH----HHHHHHhcCCCC
Confidence 234456667766654321 1 22457888888888888888766532111 11111 234677777765
No 250
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.67 E-value=0.0097 Score=62.57 Aligned_cols=46 Identities=20% Similarity=0.344 Sum_probs=33.7
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhccc
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
..++|.+..++.+........ ..-|.|+|.+|+|||++|+.+++..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHhC
Confidence 458999987666554443321 1238899999999999999999843
No 251
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.62 E-value=0.02 Score=53.24 Aligned_cols=23 Identities=43% Similarity=0.631 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHhccc
Q 003367 107 IISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
.++|+|+.|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998743
No 252
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.61 E-value=0.005 Score=64.04 Aligned_cols=84 Identities=21% Similarity=0.227 Sum_probs=54.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccch-----hhhhHHHHHHHHH
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVS-----AVAAFDTLLRHIE 178 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 178 (826)
.-+++.|+|.+|+||||||.+++.... ..-..++|++.....+.. .++.++.... ...+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 346999999999999999999997433 222357788877766654 4444543211 1233455555555
Q ss_pred HHhc-CCceeEEeccCC
Q 003367 179 KSVK-GKKFLLVLDDVW 194 (826)
Q Consensus 179 ~~l~-~k~~LlVlDdv~ 194 (826)
..++ .+.-++|+|.+.
T Consensus 133 ~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHTSCCSEEEEECTT
T ss_pred HHhhhcCCCeEEehHhh
Confidence 5443 456689999984
No 253
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.61 E-value=0.011 Score=59.77 Aligned_cols=181 Identities=17% Similarity=0.148 Sum_probs=88.2
Q ss_pred cCCccccchHHHHHHHHHHcCCCCC------CCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCH
Q 003367 76 DVSKVRGRDEEKKTIIDLLLGSSSQ------EKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDE 149 (826)
Q Consensus 76 ~~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 149 (826)
.-.+++|.++.++++.+....-... +-.-.+-|.|+|+.|+||||||+.++.... ...+.+...
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~----- 107 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS----- 107 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH-----
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC-----CCEEEecHH-----
Confidence 3457899988777665543211000 000112389999999999999999998432 223344321
Q ss_pred HHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCC----------ChhhH----HHHHhhhcCCCC--
Q 003367 150 IRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSG----------NPTKW----EELVSTLKFGSP-- 213 (826)
Q Consensus 150 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------~~~~~----~~l~~~~~~~~~-- 213 (826)
. +...... .....+...++..-.....++|+|++..- ....+ ..+...+..+..
T Consensus 108 -~----~~~~~~~-----~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~ 177 (278)
T 1iy2_A 108 -D----FVEMFVG-----VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 177 (278)
T ss_dssp -H----HHHSTTT-----HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTC
T ss_pred -H----HHHHHhh-----HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCC
Confidence 1 1111100 00111122222222345689999998210 01111 223333332222
Q ss_pred CcEEEEecccHHHHhh-----ccccceEEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCc
Q 003367 214 ESRILVTTRKEDVAKM-----MRTTSMILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLP 281 (826)
Q Consensus 214 ~s~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glP 281 (826)
...++.||..+.+... ......+.+...+.++-.+++..++-.. ....... ...+++.+.|..
T Consensus 178 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~-~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 178 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp CEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS-CBCTTCC----HHHHHHTCTTCC
T ss_pred CEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccC-CCCcccC----HHHHHHHcCCCC
Confidence 2234445555443221 1234578888888888788887665221 1111111 234666776654
No 254
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.58 E-value=0.0086 Score=62.09 Aligned_cols=88 Identities=16% Similarity=0.215 Sum_probs=54.9
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccC----CCcEEEEEeCCCCCHHHHHHHHHHHhcccch------------hhh
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAH----FDKRIWVCFSDPVDEIRVAKAILESFRDVVS------------AVA 168 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------~~~ 168 (826)
-.++.|+|.+|+||||||.+++........ -..++|++....++..++.. +++.++.... ...
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHH
Confidence 468999999999999999999874322110 24688999888776665543 3455543211 111
Q ss_pred hHHHHHHHHHHHhc--CCceeEEeccC
Q 003367 169 AFDTLLRHIEKSVK--GKKFLLVLDDV 193 (826)
Q Consensus 169 ~~~~~~~~l~~~l~--~k~~LlVlDdv 193 (826)
...++...+.+.++ .+.-+||+|.+
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 12233444444443 45678899988
No 255
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.57 E-value=0.0072 Score=59.76 Aligned_cols=89 Identities=16% Similarity=0.142 Sum_probs=52.5
Q ss_pred ccEEEEEecCCCcHHHHHHHHhccccccc----CCCcEEEEEeCCCCCHHHHHHHHHHHhcccc------------hhhh
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDA----HFDKRIWVCFSDPVDEIRVAKAILESFRDVV------------SAVA 168 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------~~~~ 168 (826)
-.++.|+|.+|+||||||+.++....... .-..++|++....+....+. .+++.++... ....
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 35899999999999999999987422211 13568888877655544432 3344443221 0111
Q ss_pred hHHHHHHHHHHHhc-CCceeEEeccCC
Q 003367 169 AFDTLLRHIEKSVK-GKKFLLVLDDVW 194 (826)
Q Consensus 169 ~~~~~~~~l~~~l~-~k~~LlVlDdv~ 194 (826)
+.......+.+.+. .+.-+||+|++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 12222333444443 467789999983
No 256
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.56 E-value=0.0037 Score=73.30 Aligned_cols=158 Identities=15% Similarity=0.165 Sum_probs=84.3
Q ss_pred CCccccchHHHHHHHHHHcCC----C---CCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCH
Q 003367 77 VSKVRGRDEEKKTIIDLLLGS----S---SQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDE 149 (826)
Q Consensus 77 ~~~~vGr~~~~~~l~~~L~~~----~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 149 (826)
-.+++|.++.++++.+++... . .-+-.....|.|+|++|+||||||+.++... ...| +.++...
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l--~~~~---i~v~~~~---- 273 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--GAFF---FLINGPE---- 273 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT--TCEE---EEEEHHH----
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc--CCcE---EEEEchH----
Confidence 356899999998888877430 0 0011234579999999999999999999832 2222 3333211
Q ss_pred HHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCC-----------hhhHHHHHhhhcCC--CCCcE
Q 003367 150 IRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGN-----------PTKWEELVSTLKFG--SPESR 216 (826)
Q Consensus 150 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~~~~~--~~~s~ 216 (826)
+. .... ......+...+.........++++|++..-. ......+...+... ..+..
T Consensus 274 ------l~----~~~~-g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~ 342 (806)
T 1ypw_A 274 ------IM----SKLA-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp ------HS----SSST-THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCE
T ss_pred ------hh----hhhh-hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEE
Confidence 10 0000 0011122223333334567899999983210 01112233333221 23445
Q ss_pred EEEecccHHHHh-hc----cccceEEccCCCCchhHHHHHHhh
Q 003367 217 ILVTTRKEDVAK-MM----RTTSMILLAKLPDNDCWSLFSQIA 254 (826)
Q Consensus 217 iivTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~a 254 (826)
+|.||....... .+ .....+.+...+.++-.+++...+
T Consensus 343 vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 666666543211 11 123456777778888888887665
No 257
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.53 E-value=0.0063 Score=59.72 Aligned_cols=114 Identities=18% Similarity=0.142 Sum_probs=60.1
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccch--------------------
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVS-------------------- 165 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------------------- 165 (826)
.+++|+|.+|+|||||++.++.... ..-..++|+.... ....+...+. .++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCce
Confidence 5899999999999999999986432 1113466665443 3344333332 3321100
Q ss_pred ---hhhhHHHHHHHHHHHhc-CCc--eeEEeccCCC---CChhhHHHHHhhhcC--CCCCcEEEEecccH
Q 003367 166 ---AVAAFDTLLRHIEKSVK-GKK--FLLVLDDVWS---GNPTKWEELVSTLKF--GSPESRILVTTRKE 224 (826)
Q Consensus 166 ---~~~~~~~~~~~l~~~l~-~k~--~LlVlDdv~~---~~~~~~~~l~~~~~~--~~~~s~iivTtR~~ 224 (826)
...+.+++...+.+.+. .+. .+||+|.... .+......+...+.. ...|..||++|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 00133444444444332 233 4999999842 133333444333322 12466788888764
No 258
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.52 E-value=0.0076 Score=60.71 Aligned_cols=83 Identities=11% Similarity=0.140 Sum_probs=53.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchh-----hhhHHHH-HHHHHHH
Q 003367 107 IISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSA-----VAAFDTL-LRHIEKS 180 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~-~~~l~~~ 180 (826)
++-|+|.+|+||||||.+++.....+..-..++||+..+.++.. .+++++..... ..+.++. ...+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 68999999999999999998743321112468899988877653 36666644221 1234444 3333322
Q ss_pred --h-cCCceeEEeccCC
Q 003367 181 --V-KGKKFLLVLDDVW 194 (826)
Q Consensus 181 --l-~~k~~LlVlDdv~ 194 (826)
+ .++.-+||+|-|.
T Consensus 105 ~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HTCCTTCCEEEEEECST
T ss_pred HHhhccCceEEEEeccc
Confidence 2 4567899999994
No 259
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.32 E-value=0.0097 Score=61.73 Aligned_cols=89 Identities=16% Similarity=0.151 Sum_probs=54.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHhccccccc---------CC-----CcEEEEEeCCCCCHHHHHHHHHHHhcccch----
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDA---------HF-----DKRIWVCFSDPVDEIRVAKAILESFRDVVS---- 165 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---------~f-----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---- 165 (826)
.-+++.|+|.+|+||||+|.+++....... .. ..++|++....++..++.. +++.++....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 346899999999999999999986422111 11 4678998888777666553 3444443211
Q ss_pred --------hhhhHHHHHHHHHHHhc--CCceeEEeccC
Q 003367 166 --------AVAAFDTLLRHIEKSVK--GKKFLLVLDDV 193 (826)
Q Consensus 166 --------~~~~~~~~~~~l~~~l~--~k~~LlVlDdv 193 (826)
......++...+.+.++ .+.-+||+|.+
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 11112233444555543 34568889988
No 260
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.32 E-value=0.013 Score=61.17 Aligned_cols=57 Identities=21% Similarity=0.270 Sum_probs=40.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHhccccccc----CCCcEEEEEeCCCCCHHHHHHHHHHHhc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDA----HFDKRIWVCFSDPVDEIRVAKAILESFR 161 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 161 (826)
.-.++.|+|.+|+||||||.+++....... .-..++|++....++...+.. ++..++
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g 181 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFN 181 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcC
Confidence 446899999999999999999987432211 224688999888777665543 344444
No 261
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.27 E-value=0.0093 Score=62.28 Aligned_cols=84 Identities=19% Similarity=0.171 Sum_probs=53.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchh-----hhhHHHHHHHHH
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSA-----VAAFDTLLRHIE 178 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 178 (826)
.-+++.|.|.+|+||||||.+++.... ..-..++|++....++... +..++..... ....+++.+.+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 346899999999999999999987432 2224688999887766432 3444432111 112344444444
Q ss_pred HHh-cCCceeEEeccCC
Q 003367 179 KSV-KGKKFLLVLDDVW 194 (826)
Q Consensus 179 ~~l-~~k~~LlVlDdv~ 194 (826)
... ..+.-+||+|.+.
T Consensus 135 ~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHTCCSEEEEECGG
T ss_pred HHHhccCCCEEEEcCHH
Confidence 333 3455699999983
No 262
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.23 E-value=0.012 Score=61.53 Aligned_cols=84 Identities=19% Similarity=0.159 Sum_probs=54.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccch-----hhhhHHHHHHHHH
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVS-----AVAAFDTLLRHIE 178 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 178 (826)
.-+++.|+|.+|+||||||.+++.... ..-..++|++....++.. .++.++.... ...+.++..+.+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 346899999999999999999987432 222468899988766643 2444543211 1123455555555
Q ss_pred HHhc-CCceeEEeccCC
Q 003367 179 KSVK-GKKFLLVLDDVW 194 (826)
Q Consensus 179 ~~l~-~k~~LlVlDdv~ 194 (826)
...+ .+.-+||+|.+.
T Consensus 133 ~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHTTTCCSEEEEECGG
T ss_pred HHHhcCCCCEEEEcChH
Confidence 4443 456799999983
No 263
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.19 E-value=0.013 Score=61.41 Aligned_cols=84 Identities=20% Similarity=0.178 Sum_probs=55.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccch-----hhhhHHHHHHHHH
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVS-----AVAAFDTLLRHIE 178 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 178 (826)
.-+++.|+|.+|+||||||.+++.... ..-..++|++....++.. .++.++.... ...+.+++.+.+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~--~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ--KAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH--HCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 345899999999999999999987432 223468899988766654 2344443211 1124455556666
Q ss_pred HHhc-CCceeEEeccCC
Q 003367 179 KSVK-GKKFLLVLDDVW 194 (826)
Q Consensus 179 ~~l~-~k~~LlVlDdv~ 194 (826)
...+ ...-+||+|.+.
T Consensus 146 ~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHTTTCCSEEEEECTT
T ss_pred HHHhcCCCCEEEEeChH
Confidence 5554 345699999984
No 264
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.06 E-value=0.0056 Score=63.27 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=32.7
Q ss_pred HHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccc-cCCCcEEEEEeCCC
Q 003367 89 TIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVD-AHFDKRIWVCFSDP 146 (826)
Q Consensus 89 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~ 146 (826)
++++.+..-. .-+.++|+|..|+|||||++.+++..... ..+. ++++-+.+.
T Consensus 163 raID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER 215 (422)
T 3ice_A 163 RVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDER 215 (422)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSC
T ss_pred eeeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCC
Confidence 4455554432 23579999999999999999998743211 1222 345555553
No 265
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.94 E-value=0.04 Score=52.46 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=22.2
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
...+|+|+|+.|.||||+|+.++..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999873
No 266
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.78 E-value=0.019 Score=58.28 Aligned_cols=87 Identities=14% Similarity=0.151 Sum_probs=45.2
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCC-CCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDP-VDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVK 182 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 182 (826)
..++|+|+|.+|+||||++..++...... .-..+..+..... ....+.+....+..+.......+..++...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~-~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLE-KHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-
Confidence 45799999999999999999998744321 1123555554321 122222333333332211111122333333443 3
Q ss_pred CCceeEEeccC
Q 003367 183 GKKFLLVLDDV 193 (826)
Q Consensus 183 ~k~~LlVlDdv 193 (826)
.+.=++|+|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 34458889954
No 267
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.78 E-value=0.036 Score=58.74 Aligned_cols=88 Identities=17% Similarity=0.202 Sum_probs=50.4
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccc----cCCCcEEEEEeCCCCCHHHHHHHHHHHhcccch------------hhh
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVD----AHFDKRIWVCFSDPVDEIRVAKAILESFRDVVS------------AVA 168 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------~~~ 168 (826)
-.++.|+|.+|+|||||+..++-..... ..-..++|++....++...+. .+++.++.... ...
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCChHhHhhcEEEeccCChH
Confidence 4699999999999999999775321111 123458888877666555433 35555543211 011
Q ss_pred hHHHHHHHHHHHh-cCCceeEEeccC
Q 003367 169 AFDTLLRHIEKSV-KGKKFLLVLDDV 193 (826)
Q Consensus 169 ~~~~~~~~l~~~l-~~k~~LlVlDdv 193 (826)
...+....+.+.+ ..+.-+||+|.+
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~ 282 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSV 282 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecch
Confidence 1112222233332 345678899987
No 268
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.74 E-value=0.17 Score=49.15 Aligned_cols=23 Identities=30% Similarity=0.703 Sum_probs=21.2
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+++|+|+.|.|||||.+.++.-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 269
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.74 E-value=0.0099 Score=56.80 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=33.9
Q ss_pred cchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcc
Q 003367 82 GRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 82 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.|++.++.+.+.+.... .....+|+|.|..|.||||+++.+...
T Consensus 2 ~~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp CHHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35667777888776532 234579999999999999999999873
No 270
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.73 E-value=0.025 Score=56.20 Aligned_cols=41 Identities=24% Similarity=0.238 Sum_probs=29.2
Q ss_pred HHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcc
Q 003367 87 KKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 87 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+++...+..... ......+|.|+|++|.||||+|+.++..
T Consensus 15 ~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 15 LARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp HHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3444444444332 2345678999999999999999999873
No 271
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.73 E-value=0.048 Score=53.14 Aligned_cols=45 Identities=24% Similarity=0.335 Sum_probs=30.9
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccc---c-CCCcEEEEEeCCCCCH
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVD---A-HFDKRIWVCFSDPVDE 149 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~-~f~~~~wv~~~~~~~~ 149 (826)
-.+++|+|+.|+|||||++.++...... . .-..++|+........
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 3699999999999999999998632211 1 1245778776554443
No 272
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.72 E-value=0.0019 Score=60.77 Aligned_cols=107 Identities=16% Similarity=0.060 Sum_probs=51.0
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccc--hhhhhHHHHHHHHHHHhcC
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVV--SAVAAFDTLLRHIEKSVKG 183 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~~l~~~l~~ 183 (826)
+++.|+|+.|+||||++..++.....++ ..+.++....+. +.-...+...++... ....+..+ +.+.+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g--~~v~~~~~~~d~--r~~~~~i~s~~g~~~~~~~~~~~~~----~~~~~~~ 75 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGK--KKVAVFKPKIDS--RYHSTMIVSHSGNGVEAHVIERPEE----MRKYIEE 75 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT--CEEEEEEEC-------CCCEECC----CEECEEESSGGG----GGGGCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeecccc--ccCcccEEecCCCceeeEEECCHHH----HHHHhcC
Confidence 4889999999999999977776432222 123333322110 000000001111000 00011111 1222234
Q ss_pred CceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEeccc
Q 003367 184 KKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRK 223 (826)
Q Consensus 184 k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~ 223 (826)
+.-+|++|.++.-+.+..+.+....+. |..|++|.+.
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~---~~~Vi~~Gl~ 112 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDR---GIDVFCAGLD 112 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHT---TCEEEEEEES
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHC---CCCEEEEeec
Confidence 556999999965444433334333332 6789988874
No 273
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.68 E-value=0.034 Score=56.80 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=27.4
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeC
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFS 144 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 144 (826)
.+++|.|.+|+|||||++.++....... -..++|+...
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~e 73 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAMLE 73 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEESS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeCc
Confidence 5899999999999999999987543221 1146666543
No 274
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.67 E-value=0.021 Score=61.16 Aligned_cols=51 Identities=18% Similarity=0.326 Sum_probs=32.9
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCC-CHHHHHHHHH
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPV-DEIRVAKAIL 157 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~ 157 (826)
+.++|+|..|+||||||..+....... .-+..+++-+.+.. ...++...+.
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhh
Confidence 368999999999999999998753322 22345566665543 2334444443
No 275
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.55 E-value=0.038 Score=55.97 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=22.5
Q ss_pred CCccEEEEEecCCCcHHHHHHHHhc
Q 003367 103 MSLPIISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 103 ~~~~vv~I~G~gGiGKTtLa~~v~~ 127 (826)
....+|.|.|++|+||||+|+++..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999987
No 276
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.54 E-value=0.036 Score=56.73 Aligned_cols=47 Identities=23% Similarity=0.217 Sum_probs=33.5
Q ss_pred cccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcc
Q 003367 80 VRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 80 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
++|-...+..+...+..... ...+.+|+|.|..|+||||+|+.+..-
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~--~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPE--PKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCC--CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHhccCC--CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45555556655555554421 346679999999999999999999863
No 277
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.49 E-value=0.045 Score=57.15 Aligned_cols=90 Identities=21% Similarity=0.251 Sum_probs=52.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCC----CcEEEEEeCCCCCHHHHHHHHHHHhcccch------------hh
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHF----DKRIWVCFSDPVDEIRVAKAILESFRDVVS------------AV 167 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------~~ 167 (826)
.-+++.|+|..|+|||||+..++......... ..++|++....+....+ ..+++.++.... ..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 34699999999999999999998743211111 23588887665443333 334443322110 01
Q ss_pred hhHHHHHHHHHHHhc------CCceeEEeccCC
Q 003367 168 AAFDTLLRHIEKSVK------GKKFLLVLDDVW 194 (826)
Q Consensus 168 ~~~~~~~~~l~~~l~------~k~~LlVlDdv~ 194 (826)
....++...+...+. .+.-+||+|.+-
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~t 241 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 241 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCch
Confidence 122334444444443 467799999983
No 278
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.48 E-value=0.049 Score=51.89 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=21.8
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
..+|+|.|+.|+||||+|+.++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999874
No 279
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.48 E-value=0.12 Score=49.06 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=22.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
...+|+|.|+.|+||||+|+.+++.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 280
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.41 E-value=0.084 Score=53.70 Aligned_cols=108 Identities=14% Similarity=0.129 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHcCCCC--CCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHH--HHHHHHHHH
Q 003367 84 DEEKKTIIDLLLGSSS--QEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEI--RVAKAILES 159 (826)
Q Consensus 84 ~~~~~~l~~~L~~~~~--~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~i~~~ 159 (826)
+.-.+++.+.+..... -.....++|+|+|.+|+||||++..++.... ..-..+.++... .+... +-+...++.
T Consensus 81 ~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~D-~~r~~a~eqL~~~~~~ 157 (306)
T 1vma_A 81 ESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAAD-TFRAAAIEQLKIWGER 157 (306)
T ss_dssp HHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEEC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEccc-cccHHHHHHHHHHHHH
Confidence 3445566666644321 0123567999999999999999999997443 222234555443 23222 112233444
Q ss_pred hcccc----hhhhhHHHHHHHHHHHhcCCceeEEeccCC
Q 003367 160 FRDVV----SAVAAFDTLLRHIEKSVKGKKFLLVLDDVW 194 (826)
Q Consensus 160 l~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 194 (826)
.+... .......-..+.+.+.+....-++|+|-.-
T Consensus 158 ~gl~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 158 VGATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HTCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECC
T ss_pred cCCcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 33211 111111112234444455555688899774
No 281
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.37 E-value=0.086 Score=54.15 Aligned_cols=52 Identities=13% Similarity=0.102 Sum_probs=37.6
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHh
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESF 160 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 160 (826)
-.++.|.|.+|+||||+|.+++.....++ ..++|++.. .+..++...+....
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 35899999999999999999987543222 567777765 45666666666543
No 282
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.36 E-value=0.096 Score=51.21 Aligned_cols=23 Identities=26% Similarity=0.629 Sum_probs=21.2
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+++|+|..|.|||||++.++.-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999874
No 283
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.35 E-value=0.088 Score=57.40 Aligned_cols=121 Identities=16% Similarity=0.211 Sum_probs=64.5
Q ss_pred chHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcc
Q 003367 83 RDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRD 162 (826)
Q Consensus 83 r~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 162 (826)
..+.++.+...+.... +.+.|.|.+|.||||++.++.......+. ..++.+..+. ...+.+.+.++.
T Consensus 30 Q~~av~~~~~~i~~~~-------~~~li~G~aGTGKT~ll~~~~~~l~~~~~-~~il~~a~T~-----~Aa~~l~~~~~~ 96 (459)
T 3upu_A 30 QKNAFNIVMKAIKEKK-------HHVTINGPAGTGATTLTKFIIEALISTGE-TGIILAAPTH-----AAKKILSKLSGK 96 (459)
T ss_dssp HHHHHHHHHHHHHSSS-------CEEEEECCTTSCHHHHHHHHHHHHHHTTC-CCEEEEESSH-----HHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhcCC-------CEEEEEeCCCCCHHHHHHHHHHHHHhcCC-ceEEEecCcH-----HHHHHHHhhhcc
Confidence 3344455555554321 38999999999999999999875432222 2344433221 122222222221
Q ss_pred cchhhhhHHHHHHHHHHH----------------hcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccHH
Q 003367 163 VVSAVAAFDTLLRHIEKS----------------VKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKED 225 (826)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~----------------l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~~ 225 (826)
.... .... +... ...+--+||+|++...+...+..+...+. .+.++++.--..+
T Consensus 97 ~~~T---~h~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~---~~~~~~~vGD~~Q 166 (459)
T 3upu_A 97 EAST---IHSI---LKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP---PWCTIIGIGDNKQ 166 (459)
T ss_dssp CEEE---HHHH---HTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC---TTCEEEEEECTTS
T ss_pred chhh---HHHH---hccCcccccccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhcc---CCCEEEEECCHHH
Confidence 1111 0100 0000 01133589999997666677777776654 5667777665443
No 284
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.33 E-value=0.1 Score=55.60 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=23.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHhccc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
.+.+|.++|.+|+||||++.+++...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 47899999999999999999998744
No 285
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.29 E-value=0.013 Score=56.22 Aligned_cols=40 Identities=18% Similarity=0.279 Sum_probs=29.5
Q ss_pred HHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhccc
Q 003367 86 EKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 86 ~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
-+++|.+.+... .....+|+|+|..|.|||||++.++.-.
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 445566665432 1245799999999999999999998743
No 286
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.24 E-value=0.0086 Score=55.92 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=21.3
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+|.|+|++|+||||+|+.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999984
No 287
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.23 E-value=0.015 Score=61.40 Aligned_cols=50 Identities=24% Similarity=0.323 Sum_probs=36.4
Q ss_pred ccccchHHHHHHHHHHcCC-------C--CCCCCCccEEEEEecCCCcHHHHHHHHhcc
Q 003367 79 KVRGRDEEKKTIIDLLLGS-------S--SQEKMSLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~-------~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.++|.+..++.+...+... . .......+.|.++|++|+|||++|+++++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999888877200 0 000113456899999999999999999984
No 288
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.18 E-value=0.053 Score=51.58 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=22.8
Q ss_pred CccEEEEEecCCCcHHHHHHHHhccc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
...+|+|+|+.|.||||+|+.++...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999999843
No 289
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.17 E-value=0.095 Score=60.45 Aligned_cols=159 Identities=15% Similarity=0.190 Sum_probs=81.2
Q ss_pred cCCccccchHHHHHHHHHHcCCCC-------CCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCC
Q 003367 76 DVSKVRGRDEEKKTIIDLLLGSSS-------QEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVD 148 (826)
Q Consensus 76 ~~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 148 (826)
.-..+.|.++.+++|.+.+.-+-. .+....+-|.++|++|.|||.+|+++++... .. ++.++.
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~--~~-----f~~v~~--- 544 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--AN-----FISIKG--- 544 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT--CE-----EEECCH---
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhC--Cc-----eEEecc---
Confidence 345678899888888776643311 0223445688999999999999999998432 22 233321
Q ss_pred HHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCceeEEeccCCCCC--------------hhhHHHHHhhhcCCC--
Q 003367 149 EIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKKFLLVLDDVWSGN--------------PTKWEELVSTLKFGS-- 212 (826)
Q Consensus 149 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------------~~~~~~l~~~~~~~~-- 212 (826)
.+++....+.. ...+.+.+...-+..+++|++|++..-- ......++..+....
T Consensus 545 -----~~l~s~~vGes-----e~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~ 614 (806)
T 3cf2_A 545 -----PELLTMWFGES-----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614 (806)
T ss_dssp -----HHHHTTTCSSC-----HHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS
T ss_pred -----chhhccccchH-----HHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC
Confidence 12222222111 1223333333335678999999994210 011233344443322
Q ss_pred CCcEEEEecccHHH-----HhhccccceEEccCCCCchhHHHHHHhh
Q 003367 213 PESRILVTTRKEDV-----AKMMRTTSMILLAKLPDNDCWSLFSQIA 254 (826)
Q Consensus 213 ~~s~iivTtR~~~v-----~~~~~~~~~~~l~~L~~~~~~~lf~~~a 254 (826)
.+.-||-||..+.. .+...-+..+.+..-+.++-.++|+.+.
T Consensus 615 ~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 23233435543322 2211235677787767777777776654
No 290
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.14 E-value=0.051 Score=53.61 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=28.5
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCC
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSD 145 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 145 (826)
.++.|.|.+|+||||||.+++.... ..-..++|++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~--~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGL--KMGEPGIYVALEE 61 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccC
Confidence 5899999999999999998876432 2224577777654
No 291
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.02 E-value=0.011 Score=54.84 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=21.0
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+|+|.|+.|+||||+|+.++..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999874
No 292
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.01 E-value=0.11 Score=48.03 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=21.6
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
-.+|+|+|+.|.||||+|+.++..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 468999999999999999999873
No 293
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.01 E-value=0.2 Score=49.73 Aligned_cols=22 Identities=45% Similarity=0.625 Sum_probs=20.5
Q ss_pred cEEEEEecCCCcHHHHHHHHhc
Q 003367 106 PIISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~ 127 (826)
.+++|+|+.|.|||||.+.++.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999986
No 294
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.95 E-value=0.012 Score=54.77 Aligned_cols=20 Identities=40% Similarity=0.687 Sum_probs=18.9
Q ss_pred cEEEEEecCCCcHHHHHHHH
Q 003367 106 PIISILGTGGVGKTTLARLV 125 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v 125 (826)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 295
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.95 E-value=0.012 Score=56.03 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.7
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.++|+|+|+.|+||||+|+.++..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999973
No 296
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.93 E-value=0.014 Score=55.13 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=21.8
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
-.+|+|+|+.|+|||||++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999999873
No 297
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.80 E-value=0.013 Score=54.70 Aligned_cols=22 Identities=41% Similarity=0.543 Sum_probs=20.6
Q ss_pred cEEEEEecCCCcHHHHHHHHhc
Q 003367 106 PIISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~ 127 (826)
.+|.|.|++|+||||+|+.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4799999999999999999987
No 298
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.77 E-value=0.016 Score=54.24 Aligned_cols=24 Identities=21% Similarity=0.497 Sum_probs=21.6
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
-++++|+|+.|+|||||++.+...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999999873
No 299
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.76 E-value=0.014 Score=54.85 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.6
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+.|.|+|+.|+||||+|+.++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999973
No 300
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.75 E-value=0.2 Score=53.36 Aligned_cols=44 Identities=27% Similarity=0.237 Sum_probs=30.1
Q ss_pred HHHHHHHHcCCCC---CCCCCccEEEEEecCCCcHHHHHHHHhcccc
Q 003367 87 KKTIIDLLLGSSS---QEKMSLPIISILGTGGVGKTTLARLVFNEVK 130 (826)
Q Consensus 87 ~~~l~~~L~~~~~---~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 130 (826)
.+++.++|..... ......++|.++|.+|+||||++..++....
T Consensus 76 ~~eL~~~L~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 76 YDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp HHHHHHHHCSSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455555543211 1123468999999999999999999987443
No 301
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.73 E-value=0.043 Score=51.48 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=22.8
Q ss_pred CccEEEEEecCCCcHHHHHHHHhccc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
...+|.|.|++|+||||+|+.++...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44689999999999999999999844
No 302
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.71 E-value=0.029 Score=56.71 Aligned_cols=27 Identities=22% Similarity=0.317 Sum_probs=23.5
Q ss_pred CCccEEEEEecCCCcHHHHHHHHhccc
Q 003367 103 MSLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 103 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
....+|+|+|..|+||||||+.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999998743
No 303
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.68 E-value=0.047 Score=47.65 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=26.9
Q ss_pred EEEccCCCCcc--ccchhhcCCCCCcEEeccCCCCCcccchhhhcccCCCeeeecCccc
Q 003367 495 YLNLSNNDAIY--ELPEALCDLCNLQTLDVSNCGNLHALPQGIAKLINLRHLINEGTPL 551 (826)
Q Consensus 495 ~L~Ls~~~~~~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~l 551 (826)
.++.+++. ++ .+|..+. .+|++|+|++|.+...-+..|..+++|++|+|++|++
T Consensus 12 ~v~Cs~~~-L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRG-LTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSC-CCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCC-CccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 44555554 44 5554322 3456666666553222223345556666666665544
No 304
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.67 E-value=0.013 Score=54.42 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.0
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+|+|+|+.|+||||+++.++..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999973
No 305
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.66 E-value=0.019 Score=54.32 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=22.2
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
...+|.|.|+.|+||||+|+.++..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999873
No 306
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.55 E-value=0.39 Score=48.37 Aligned_cols=23 Identities=30% Similarity=0.703 Sum_probs=21.2
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+++|+|..|.|||||++.++.-
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999999874
No 307
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.54 E-value=0.028 Score=57.79 Aligned_cols=46 Identities=17% Similarity=0.227 Sum_probs=32.8
Q ss_pred ccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcc
Q 003367 81 RGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 81 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
|+.+.-.+++.+.+...-. .+....|.|+|+.|+||||+|+.++..
T Consensus 2 ~~~~~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 4556666777776643221 124456899999999999999999874
No 308
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.50 E-value=0.17 Score=51.97 Aligned_cols=51 Identities=14% Similarity=0.079 Sum_probs=36.6
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHh
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESF 160 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 160 (826)
.++.|.|.+|+||||+|..++..... .=..++|++.. .+..++...++...
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlE--ms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLE--MSAEQLALRALSDL 97 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESS--SCHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCC--CCHHHHHHHHHHHh
Confidence 58999999999999999999885432 22356666654 45667766666554
No 309
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.44 E-value=0.018 Score=58.94 Aligned_cols=40 Identities=15% Similarity=0.274 Sum_probs=29.8
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCC
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSD 145 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 145 (826)
+.+||+|.|-|||||||.|..++.-.. ..-..+.-|++..
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA--~~GkkVllID~Dp 86 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFS--ILGKRVLQIGCDP 86 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEESS
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHH--HCCCeEEEEecCC
Confidence 668999999999999999888876332 2223466677664
No 310
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.39 E-value=0.019 Score=52.92 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
..++|+|.|+.|+||||+|+.++..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999873
No 311
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.38 E-value=0.023 Score=54.61 Aligned_cols=25 Identities=36% Similarity=0.563 Sum_probs=22.3
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
..++|+|+|+.|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3468999999999999999999874
No 312
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.36 E-value=0.02 Score=54.13 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=21.4
Q ss_pred cEEEEEecCCCcHHHHHHHHhccc
Q 003367 106 PIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
.+|.|.|+.|+||||+|+.++...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999843
No 313
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.36 E-value=0.018 Score=53.74 Aligned_cols=25 Identities=48% Similarity=0.646 Sum_probs=21.9
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
..++|.|+|++|+||||+|+.++..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999874
No 314
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.30 E-value=0.19 Score=53.78 Aligned_cols=59 Identities=14% Similarity=0.122 Sum_probs=37.3
Q ss_pred HHHHHHHHHHcCCCCC---CCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeC
Q 003367 85 EEKKTIIDLLLGSSSQ---EKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFS 144 (826)
Q Consensus 85 ~~~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 144 (826)
.-.+++.+++...... .....++|.|+|.+|+||||+|.+++.....+. -..+..|++.
T Consensus 77 ~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~-G~kVllvd~D 138 (433)
T 2xxa_A 77 IVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKH-KKKVLVVSAD 138 (433)
T ss_dssp HHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTS-CCCEEEEECC
T ss_pred HHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhc-CCeEEEEecC
Confidence 3455666776543210 123578999999999999999999997443220 2235555554
No 315
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.30 E-value=0.026 Score=52.95 Aligned_cols=25 Identities=40% Similarity=0.472 Sum_probs=22.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
...+|+|+|+.|+||||+|+.++..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999873
No 316
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.29 E-value=0.021 Score=53.93 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=21.2
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+|.|.|+.|+||||+|+.++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999984
No 317
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.27 E-value=0.019 Score=54.89 Aligned_cols=25 Identities=40% Similarity=0.707 Sum_probs=22.3
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
..++|+|+|+.|+||||+++.+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999874
No 318
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.21 E-value=0.033 Score=50.92 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=22.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHhccc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
..++++|+|..|+|||||+.++....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 46799999999999999999999843
No 319
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.20 E-value=0.17 Score=54.19 Aligned_cols=63 Identities=22% Similarity=0.299 Sum_probs=42.4
Q ss_pred HHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCC-CHHHHHHHHHH
Q 003367 90 IIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPV-DEIRVAKAILE 158 (826)
Q Consensus 90 l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~ 158 (826)
.++.|..-. +-+.++|.|..|+|||+|+.++++... +.+-+.++++-+.+.. ...++...+.+
T Consensus 155 vID~l~pig-----kGqr~gIfgg~GvGKT~L~~~l~~~~a-~~~~~v~V~~~iGER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 155 VVNLLAPYR-----RGGKIGLFGGAGVGKTVLIMELINNIA-KAHGGVSVFGGVGERTREGNDLYMEMKE 218 (498)
T ss_dssp THHHHSCCC-----TTCCEEEEECSSSSHHHHHHHHHHHTT-TTCSSCEEEEEESCCSHHHHHHHHHHHH
T ss_pred Eeeeecccc-----cCCeEEeecCCCCCchHHHHHHHHHHH-hhCCCEEEEEEcccCcHHHHHHHHhhhc
Confidence 455565432 224589999999999999999988432 2334677788777654 34566666654
No 320
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.18 E-value=0.027 Score=53.42 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.7
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
..+|+|.|+.|+||||+|+.++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 321
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.14 E-value=0.02 Score=53.28 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 003367 107 IISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
+|.|.|+.|+||||+|+.++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999973
No 322
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.13 E-value=0.024 Score=54.20 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=21.2
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+++|+|+.|+|||||++.++..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 58999999999999999999873
No 323
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.12 E-value=0.25 Score=53.91 Aligned_cols=43 Identities=23% Similarity=0.213 Sum_probs=29.0
Q ss_pred HHHHHHHHcCCCCC---CCCCccEEEEEecCCCcHHHHHHHHhccc
Q 003367 87 KKTIIDLLLGSSSQ---EKMSLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 87 ~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
.++|.+++...... .....++|+|+|.+|+||||++.+++...
T Consensus 80 ~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 80 FKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp HHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45566666543211 11357799999999999999999998643
No 324
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.12 E-value=0.027 Score=53.74 Aligned_cols=24 Identities=42% Similarity=0.488 Sum_probs=22.3
Q ss_pred CccEEEEEecCCCcHHHHHHHHhc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~ 127 (826)
...+|+|+|+.|+||||+|+.++.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999997
No 325
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.11 E-value=0.13 Score=48.87 Aligned_cols=87 Identities=18% Similarity=0.183 Sum_probs=47.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHh---cc------cchhhhhHHHHHHHH
Q 003367 107 IISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESF---RD------VVSAVAAFDTLLRHI 177 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l---~~------~~~~~~~~~~~~~~l 177 (826)
+|.|.|++|+||+|.|+.++.... ...++. -+++++-++.- +. ........+-+...+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g-------~~~ist------GdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv 68 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG-------FVHIST------GDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALI 68 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-------CEEEEH------HHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-------CeEEcH------HHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHH
Confidence 578999999999999999998432 223332 23333322211 00 001111223455666
Q ss_pred HHHhcCCceeEEeccCCCCChhhHHHHHhhh
Q 003367 178 EKSVKGKKFLLVLDDVWSGNPTKWEELVSTL 208 (826)
Q Consensus 178 ~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~ 208 (826)
.+.+..... +|||..- .+..+.+.+...+
T Consensus 69 ~~~l~~~~~-~ilDGfP-Rt~~Qa~~l~~~l 97 (206)
T 3sr0_A 69 EEVFPKHGN-VIFDGFP-RTVKQAEALDEML 97 (206)
T ss_dssp HHHCCSSSC-EEEESCC-CSHHHHHHHHHHH
T ss_pred HHhhccCCc-eEecCCc-hhHHHHHHHHhhH
Confidence 777755443 7889984 3344445444433
No 326
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.09 E-value=0.024 Score=53.43 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.3
Q ss_pred cEEEEEecCCCcHHHHHHHHhc
Q 003367 106 PIISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~ 127 (826)
.+++|+|+.|.||||+++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999985
No 327
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.09 E-value=0.02 Score=53.85 Aligned_cols=23 Identities=43% Similarity=0.644 Sum_probs=21.0
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
++++|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57999999999999999999873
No 328
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.04 E-value=0.14 Score=48.22 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 003367 107 IISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
+|+|.|+.|+||||+|+.++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999984
No 329
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.04 E-value=0.026 Score=53.89 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=20.4
Q ss_pred cEEEEEecCCCcHHHHHHHHhc
Q 003367 106 PIISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~ 127 (826)
.+|+|+|+.|+||||+|+.++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999987
No 330
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.03 E-value=0.034 Score=57.97 Aligned_cols=111 Identities=9% Similarity=0.139 Sum_probs=59.7
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHhcCCc
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIEKSVKGKK 185 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 185 (826)
.+|+|+|+.|.||||+.+.+..... ......+ +.+.++.... .......+.... ...+.....+.+...|...+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~--~~~~~~i-~t~ed~~e~~--~~~~~~~v~q~~-~~~~~~~~~~~La~aL~~~P 197 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLN--NTKYHHI-LTIEDPIEFV--HESKKCLVNQRE-VHRDTLGFSEALRSALREDP 197 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHH--HHCCCEE-EEEESSCCSC--CCCSSSEEEEEE-BTTTBSCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHhccc--CCCCcEE-EEccCcHHhh--hhccccceeeee-eccccCCHHHHHHHHhhhCc
Confidence 3899999999999999999976322 1111222 2222211100 000000000000 00011123346778888889
Q ss_pred eeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccHHHH
Q 003367 186 FLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKEDVA 227 (826)
Q Consensus 186 ~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~~v~ 227 (826)
=+|++|.+ .+.+.++.+..... .|.-|++|+-....+
T Consensus 198 dvillDEp--~d~e~~~~~~~~~~---~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 198 DIILVGEM--RDLETIRLALTAAE---TGHLVFGTLHTTSAA 234 (356)
T ss_dssp SEEEESCC--CSHHHHHHHHHHHH---TTCEEEEEESCSSHH
T ss_pred CEEecCCC--CCHHHHHHHHHHHh---cCCEEEEEEccChHH
Confidence 99999999 45556665554432 355688888765544
No 331
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.03 E-value=0.03 Score=53.67 Aligned_cols=25 Identities=40% Similarity=0.421 Sum_probs=22.2
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
...+|+|+|+.|.||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4468999999999999999999873
No 332
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.00 E-value=0.024 Score=56.32 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=20.9
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
++|.|.|+.|+||||||++++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999999874
No 333
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.00 E-value=0.18 Score=47.68 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcccc
Q 003367 107 IISILGTGGVGKTTLARLVFNEVK 130 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~~~ 130 (826)
.|+|=|..|+||||.++.+++..+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~ 25 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 378889999999999999998543
No 334
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.98 E-value=1 Score=58.98 Aligned_cols=232 Identities=12% Similarity=0.081 Sum_probs=0.0
Q ss_pred EEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccc-------hhhhhHHHHHHHHHHH
Q 003367 108 ISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVV-------SAVAAFDTLLRHIEKS 180 (826)
Q Consensus 108 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~~~~~l~~~ 180 (826)
|.++|++|.|||++|+.+.. .... ...+.++++...+...+++.+...+.... ....
T Consensus 1270 vLL~GPpGtGKT~la~~~l~--~~~~--~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~------------ 1333 (2695)
T 4akg_A 1270 IILCGPPGSGKTMIMNNALR--NSSL--YDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKS------------ 1333 (2695)
T ss_dssp EEEECSTTSSHHHHHHHHHH--SCSS--CEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBS------------
T ss_pred EEEECCCCCCHHHHHHHHHh--cCCC--CceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCC------------
Q ss_pred hcCCceeEEeccCCCCChh------hHHHHHhhhcCCC------------CCcEEEEecccHH-------HHhhccccce
Q 003367 181 VKGKKFLLVLDDVWSGNPT------KWEELVSTLKFGS------------PESRILVTTRKED-------VAKMMRTTSM 235 (826)
Q Consensus 181 l~~k~~LlVlDdv~~~~~~------~~~~l~~~~~~~~------------~~s~iivTtR~~~-------v~~~~~~~~~ 235 (826)
.+++.++.+||+.--..+ ..+.+...+..++ .+..+|.|+.... -.+.......
T Consensus 1334 -~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~v 1412 (2695)
T 4akg_A 1334 -DIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAI 1412 (2695)
T ss_dssp -SSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEE
T ss_pred -CCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeE
Q ss_pred EEccCCCCchhHHHHHHhhhcCCCcccchhhHHHHHHHHHhcCCCchhHHHHhhhhcCCcCHHHHHHhhhhhcccccccC
Q 003367 236 ILLAKLPDNDCWSLFSQIAFSGRTTEECQKLTDIGRMIADKCNGLPLAAKTSGSLLSLKTTMEQWKTVLDSEIWKVEDVE 315 (826)
Q Consensus 236 ~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~ 315 (826)
+.+...+.++-.++|.......-. ..++...+++.|+... .+.|..+...
T Consensus 1413 i~i~~P~~~~l~~I~~~il~~~l~--~~~~v~~~~~~lv~at-------------------i~~y~~v~~~--------- 1462 (2695)
T 4akg_A 1413 LYLGYPSGKSLSQIYEIYYKAIFK--LVPEFRSYTEPFARAS-------------------VHLYNECKAR--------- 1462 (2695)
T ss_dssp EECCCCTTTHHHHHHHHHHHHHTT--SSGGGGGGHHHHHHHH-------------------HHHHHHHHHH---------
T ss_pred EEeCCCCHHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHH-------------------HHHHHHHHHH---------
Q ss_pred cCcchhhhhhccCCcHHHHHHhhhhccC-CCCceeCHHHHHHHHHHcC---CcccCCCchHHHHHHHHHHHHhhccC
Q 003367 316 KGLLPPLVISYFDLPSIVRRCFSYCAIF-PKGYEINKDHLIKLWMAQG---YLKVEGREDMELIGEECFVNLATRSF 388 (826)
Q Consensus 316 ~~i~~~l~~sy~~L~~~~k~~fl~~a~f-p~~~~i~~~~li~~w~a~g---~i~~~~~~~~~~~~~~~~~~L~~~sl 388 (826)
+.+.-+.-|.-=+.++-++|.-+-.. +....-+...++++|.-|. |...--.....+...+.+.+.+...|
T Consensus 1463 --~~~~~k~HY~FnlRDLsrv~qGll~~~~~~~~~~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f~~~l~~~~~~~f 1537 (2695)
T 4akg_A 1463 --YSTGLQSHYLFSPRELTRLVRGVYTAINTGPRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETVDKYL 1537 (2695)
T ss_dssp --SCTTTCTTCCCCHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHHHHS
T ss_pred --cCCccCCCcccCHHHHHHHHHHHHhcCchhhhccHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
No 335
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.98 E-value=0.029 Score=53.93 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=22.2
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
...+|+|+|..|.|||||++.++.-
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999873
No 336
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.95 E-value=0.17 Score=52.31 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=28.1
Q ss_pred HHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhccc
Q 003367 88 KTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 88 ~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
-++++.+..-. .-+.++|+|.+|+|||+|+.++++..
T Consensus 163 iraID~l~Pig-----rGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 163 TRLIDLFAPIG-----KGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp HHHHHHHSCCB-----TTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred chhhhhccccc-----CCceEEEecCCCCChhHHHHHHHHHH
Confidence 45667775432 23578999999999999999998843
No 337
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.94 E-value=0.03 Score=53.63 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=21.6
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
..+|+|+|+.|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999874
No 338
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.94 E-value=0.025 Score=52.29 Aligned_cols=23 Identities=35% Similarity=0.777 Sum_probs=20.1
Q ss_pred ccEEEEEecCCCcHHHHHHHHhc
Q 003367 105 LPIISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~ 127 (826)
-.+++|+|+.|.|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 35899999999999999997654
No 339
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.92 E-value=0.14 Score=54.49 Aligned_cols=26 Identities=27% Similarity=0.207 Sum_probs=23.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHhccc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
..++|+|+|.+|+||||++..++...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999744
No 340
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.92 E-value=0.026 Score=53.87 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhccc
Q 003367 107 IISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
+|+|.|+.|+||||+|+.++...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999843
No 341
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.91 E-value=0.022 Score=53.15 Aligned_cols=23 Identities=43% Similarity=0.644 Sum_probs=20.3
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
|.|.|+|++|+|||||++++..+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45889999999999999999863
No 342
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.89 E-value=0.03 Score=53.17 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=21.3
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+|+|.|+.|+||||+|+.++..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999873
No 343
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.88 E-value=0.066 Score=56.75 Aligned_cols=85 Identities=11% Similarity=0.166 Sum_probs=49.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcccccccCCC----cEEEEEeCCC-CCHHHHHHHHHHH--hcc-----cchhhhh-----
Q 003367 107 IISILGTGGVGKTTLARLVFNEVKVDAHFD----KRIWVCFSDP-VDEIRVAKAILES--FRD-----VVSAVAA----- 169 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~----~~~wv~~~~~-~~~~~~~~~i~~~--l~~-----~~~~~~~----- 169 (826)
.++|.|..|+|||+|+.+++++... +.+ .++++-+.+. ..+.++...+.+. +.. ...+...
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~ 230 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIA 230 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHH
Confidence 4789999999999999999985442 112 4555555543 3445555655442 110 0011111
Q ss_pred HHHHHHHHHHHh---cCCceeEEeccC
Q 003367 170 FDTLLRHIEKSV---KGKKFLLVLDDV 193 (826)
Q Consensus 170 ~~~~~~~l~~~l---~~k~~LlVlDdv 193 (826)
.....-.+.+++ +++.+|+++||+
T Consensus 231 a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 231 TPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 111222334444 379999999998
No 344
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.87 E-value=0.022 Score=53.46 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 003367 107 IISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
+|+|.|+.|+||||+|+.++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 345
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.87 E-value=0.19 Score=56.10 Aligned_cols=105 Identities=19% Similarity=0.224 Sum_probs=54.6
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchhhhhHHHHHHHHH-HHhc--
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSAVAAFDTLLRHIE-KSVK-- 182 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~-- 182 (826)
+++.|.|.+|.||||++..+.......+ ..+.+..... ...+.+.+.++.... .+..+..... ....
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g---~~Vl~~ApT~----~Aa~~L~e~~~~~a~---Tih~ll~~~~~~~~~~~ 274 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLG---LEVGLCAPTG----KAARRLGEVTGRTAS---TVHRLLGYGPQGFRHNH 274 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEEESSH----HHHHHHHHHHTSCEE---EHHHHTTEETTEESCSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcC---CeEEEecCcH----HHHHHhHhhhcccHH---HHHHHHcCCcchhhhhh
Confidence 5899999999999999999987443221 2333333222 122223332222111 1111100000 0000
Q ss_pred ---CCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEeccc
Q 003367 183 ---GKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRK 223 (826)
Q Consensus 183 ---~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~ 223 (826)
.+--+||+|++..-+...+..+...++ .+.++|+.--.
T Consensus 275 ~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD~ 315 (574)
T 3e1s_A 275 LEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGDT 315 (574)
T ss_dssp SSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEECT
T ss_pred cccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEecc
Confidence 123489999996666666666666554 56677776543
No 346
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.87 E-value=0.21 Score=50.65 Aligned_cols=38 Identities=29% Similarity=0.110 Sum_probs=28.0
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeC
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFS 144 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 144 (826)
.++|+++|.+|+||||++..++.... ..-..+.++...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~--~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK--KKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH--HTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEecC
Confidence 67999999999999999999987433 222345555544
No 347
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.87 E-value=0.027 Score=53.24 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.4
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
..+|+|.|+.|+||||+|+.++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999873
No 348
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.87 E-value=0.031 Score=52.59 Aligned_cols=25 Identities=16% Similarity=0.539 Sum_probs=22.3
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
..++|+|+|+.|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4578999999999999999999873
No 349
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.82 E-value=0.036 Score=52.83 Aligned_cols=25 Identities=32% Similarity=0.329 Sum_probs=22.2
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
...+|+|.|+.|+||||+|+.++..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4458999999999999999999873
No 350
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.72 E-value=0.025 Score=52.30 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.8
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
++|+|.|+.|+||||+|+.++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999873
No 351
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.72 E-value=0.18 Score=51.89 Aligned_cols=27 Identities=30% Similarity=0.278 Sum_probs=23.6
Q ss_pred CCccEEEEEecCCCcHHHHHHHHhccc
Q 003367 103 MSLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 103 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
....+|+|+|+.|+||||+++.++...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999998743
No 352
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.71 E-value=0.05 Score=52.85 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcc
Q 003367 84 DEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 84 ~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
++..+.+...+.. ....+|+|+|.+|+|||||+..+...
T Consensus 23 ~~~a~~~r~~~~~------~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 23 KRLADKNRKLLNK------HGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHHHH------TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh------CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3344455555432 24578999999999999999999874
No 353
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.70 E-value=0.027 Score=53.54 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=20.5
Q ss_pred cEEEEEecCCCcHHHHHHHHhc
Q 003367 106 PIISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~ 127 (826)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999986
No 354
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=93.70 E-value=0.068 Score=56.66 Aligned_cols=88 Identities=8% Similarity=0.114 Sum_probs=49.0
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccc--------cCCC-cEEEEEeCCC-CCHHHHHHHHHHH--hcc-----cchhhh
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVD--------AHFD-KRIWVCFSDP-VDEIRVAKAILES--FRD-----VVSAVA 168 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~--------~~f~-~~~wv~~~~~-~~~~~~~~~i~~~--l~~-----~~~~~~ 168 (826)
+.++|.|..|+|||+|+.+++++.... ++-+ .++++-+.+. ..+.++...+.+. +.. ...+..
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 357899999999999999999865431 1111 4555555543 3344555554432 100 001111
Q ss_pred -----hHHHHHHHHHHHh---cCCceeEEeccC
Q 003367 169 -----AFDTLLRHIEKSV---KGKKFLLVLDDV 193 (826)
Q Consensus 169 -----~~~~~~~~l~~~l---~~k~~LlVlDdv 193 (826)
......-.+.+++ +++.+|+++||+
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 1111222334444 378999999998
No 355
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.69 E-value=0.032 Score=53.40 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=20.4
Q ss_pred cEEEEEecCCCcHHHHHHHHhc
Q 003367 106 PIISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~ 127 (826)
.+|+|+|+.|.||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 356
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.68 E-value=0.04 Score=51.96 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.7
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
..+|+|.|+.|+||||+|+.++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 357
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.65 E-value=0.15 Score=54.72 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=22.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
...+|.|+|++|.||||+|++++.+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 5679999999999999999999874
No 358
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.65 E-value=0.034 Score=54.93 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=21.3
Q ss_pred ccEEEEEecCCCcHHHHHHHHhc
Q 003367 105 LPIISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~ 127 (826)
..+|+|+|+.|+||||+++.++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999995
No 359
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.65 E-value=0.025 Score=52.89 Aligned_cols=24 Identities=46% Similarity=0.530 Sum_probs=17.7
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
..+|.|.|+.|+||||+|+.++..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999873
No 360
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.65 E-value=0.041 Score=56.05 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=23.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHhccc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
...+|+|+|++|+||||+++.++.-.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999998743
No 361
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.63 E-value=0.041 Score=52.78 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=23.6
Q ss_pred CCccEEEEEecCCCcHHHHHHHHhcc
Q 003367 103 MSLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 103 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
...+||.|.|++|+||||.|+.++..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999984
No 362
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.61 E-value=0.033 Score=55.62 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.7
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
..+|.|.|++|+||||+|+.++..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999974
No 363
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.58 E-value=0.095 Score=66.06 Aligned_cols=83 Identities=20% Similarity=0.195 Sum_probs=53.9
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccc-----hhhhhHHHHHHHHH
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVV-----SAVAAFDTLLRHIE 178 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 178 (826)
..++|.|+|++|+|||+||.+++.... .+=..++|+++...++... ++.++.+. ......++....++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~--~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 457899999999999999999987432 3334577888887766655 34444210 01112234444444
Q ss_pred HHh-cCCceeEEeccC
Q 003367 179 KSV-KGKKFLLVLDDV 193 (826)
Q Consensus 179 ~~l-~~k~~LlVlDdv 193 (826)
+.. +.+.-+||+|.+
T Consensus 1499 ~lvr~~~~~lVVIDsi 1514 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSV 1514 (2050)
T ss_dssp HHHHHTCCSEEEESCG
T ss_pred HHHhcCCCCEEEEcCh
Confidence 443 356779999999
No 364
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.56 E-value=0.033 Score=54.28 Aligned_cols=22 Identities=41% Similarity=0.718 Sum_probs=20.7
Q ss_pred cEEEEEecCCCcHHHHHHHHhc
Q 003367 106 PIISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~ 127 (826)
.+|+|+|+.|.||||+|+.++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 365
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.54 E-value=0.034 Score=52.15 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.9
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+|+|.|+.|+||||+|+.++..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999873
No 366
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.52 E-value=0.15 Score=52.23 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=23.6
Q ss_pred CCccEEEEEecCCCcHHHHHHHHhccc
Q 003367 103 MSLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 103 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
...++|+|+|.+|+||||++..++...
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999998743
No 367
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.49 E-value=0.035 Score=55.10 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=22.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
...+|+|.|+.|+||||+|+.+...
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 5578999999999999999999873
No 368
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.49 E-value=0.037 Score=53.02 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.6
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
-.+++|+|+.|+|||||++.+..-
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 358999999999999999999873
No 369
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.48 E-value=0.042 Score=52.89 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.3
Q ss_pred ccEEEEEecCCCcHHHHHHHHhccc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
..+|+|.|+.|+||||+|+.++...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999843
No 370
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.47 E-value=0.035 Score=51.04 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 003367 107 IISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 371
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.47 E-value=0.069 Score=57.06 Aligned_cols=51 Identities=24% Similarity=0.373 Sum_probs=36.6
Q ss_pred CccccchHHHHHHHHHHcCC--------CCCCCCCccEEEEEecCCCcHHHHHHHHhcc
Q 003367 78 SKVRGRDEEKKTIIDLLLGS--------SSQEKMSLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
..++|.++.++.+...+... .-......+-|.++|++|+||||+|++++..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 45899999888887666321 0000113456899999999999999999984
No 372
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.42 E-value=0.17 Score=51.33 Aligned_cols=26 Identities=27% Similarity=0.207 Sum_probs=22.9
Q ss_pred CccEEEEEecCCCcHHHHHHHHhccc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
..++++|+|.+|+||||++..++...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999743
No 373
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.41 E-value=0.046 Score=52.48 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=22.8
Q ss_pred CccEEEEEecCCCcHHHHHHHHhccc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
...+|+|.|+.|+||||+|+.++...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999843
No 374
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.41 E-value=0.039 Score=53.44 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.6
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
...|+|.|+.|+||||+|+.++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999873
No 375
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.41 E-value=0.038 Score=53.12 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.8
Q ss_pred cEEEEEecCCCcHHHHHHHHhccc
Q 003367 106 PIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
.+|+|.|+.|+||||+|+.++...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999844
No 376
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.41 E-value=0.15 Score=54.32 Aligned_cols=65 Identities=26% Similarity=0.375 Sum_probs=42.0
Q ss_pred HHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCC-CHHHHHHHHHHH
Q 003367 89 TIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPV-DEIRVAKAILES 159 (826)
Q Consensus 89 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~ 159 (826)
+.++.|..-. .-+.++|+|..|+|||+|+.++++... +.+-+.++++-+.+.. .+.++...+.+.
T Consensus 142 r~ID~l~pig-----kGQr~~Ifgg~G~GKT~L~~~i~~~~~-~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYA-----KGGKIGLFGGAGVGKTVLIMELINNVA-KAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEE-----TTCEEEEEECTTSSHHHHHHHHHHHTT-TTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccc-----cCCeeeeecCCCCChHHHHHHHHHhhH-hhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 3556554332 235689999999999999999988432 2233556777676643 345566666543
No 377
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.36 E-value=0.038 Score=52.01 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=22.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHhc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~ 127 (826)
...+|+|+|+.|.||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 378
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.35 E-value=0.04 Score=51.32 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=21.6
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
..+|+|.|+.|.||||+++.++..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 379
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.28 E-value=0.043 Score=53.42 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.6
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
...|+|.|+.|+||||+|+.++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 380
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.28 E-value=0.054 Score=50.77 Aligned_cols=92 Identities=17% Similarity=0.101 Sum_probs=48.3
Q ss_pred hhhhccCCCCcEEecccc-ccccccccccccccccCCCCccEEEccCCCCccc-----cchhhcCCCCCcEEeccCCCCC
Q 003367 455 PSLFDRLTCLRTLCLRCH-ERHFCLSIARLPRNIKKLKHLRYLNLSNNDAIYE-----LPEALCDLCNLQTLDVSNCGNL 528 (826)
Q Consensus 455 ~~~~~~l~~Lr~L~L~~~-~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~~~~-----lp~~i~~L~~L~~L~L~~~~~~ 528 (826)
...+.+-+.|+.|+|++| .+... ....+-+.+..-..|+.|+|++|. ++. +-+.+..-+.|++|+|++|.+.
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~-ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKE-RIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHH-HHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHhcCCCccEEECCCCCCCCHH-HHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 344556667777777743 33221 223344455555677777777776 332 2333445566777777776643
Q ss_pred cc----cchhhhcccCCCeeeecC
Q 003367 529 HA----LPQGIAKLINLRHLINEG 548 (826)
Q Consensus 529 ~~----lp~~i~~L~~L~~L~l~~ 548 (826)
.. +-..+..-+.|++|++++
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHHHHHHhhCCceeEEECCC
Confidence 22 122233334466666653
No 381
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.27 E-value=0.044 Score=49.73 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=21.3
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+++|+|+.|.|||||++.++.-
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999874
No 382
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.27 E-value=0.068 Score=54.80 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=31.2
Q ss_pred CCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCC
Q 003367 103 MSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPV 147 (826)
Q Consensus 103 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 147 (826)
...++|+|+|-||+||||+|..++.-.. ..-..++-|++....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La--~~G~~VlliD~D~~~ 81 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFS--ILGKRVLQIGCDPKH 81 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEESSSC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHH--HCCCeEEEEeCCCCC
Confidence 3568999999999999999999987443 222356677776543
No 383
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.22 E-value=0.054 Score=52.38 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=30.2
Q ss_pred cchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcc
Q 003367 82 GRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 82 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
+.++..+.+...+.. ...++|+|+|.+|+|||||+.++...
T Consensus 13 ~~~~~~~~~~~~~~~------~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRE------SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHH------HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcc------cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 344555555555532 24678999999999999999999874
No 384
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.22 E-value=0.044 Score=56.07 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=22.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
...+|+|+|..|.|||||++.++.-
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 4579999999999999999999874
No 385
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.22 E-value=0.24 Score=53.34 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=29.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCC
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVD 148 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 148 (826)
...+|+|+|..|+|||||++.++.... . ..+.+++...+.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~--~-~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFE--Q-QGKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHH--H-TTCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhh--h-cCCeEEEecCcccc
Confidence 457999999999999999999987432 1 13445554444443
No 386
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.21 E-value=0.036 Score=53.58 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=21.1
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+++|+|+.|+|||||++.+...
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999999873
No 387
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.14 E-value=0.052 Score=54.80 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=21.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHhc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~ 127 (826)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999983
No 388
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.11 E-value=0.092 Score=53.41 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHhccc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
...+++|+|+.|+||||+++.++...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999743
No 389
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.11 E-value=0.08 Score=49.81 Aligned_cols=25 Identities=36% Similarity=0.476 Sum_probs=21.9
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
....|+|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4457899999999999999999874
No 390
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.08 E-value=0.057 Score=53.18 Aligned_cols=25 Identities=24% Similarity=0.150 Sum_probs=22.2
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
...+|+|.|+.|+||||+|+.+.+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999873
No 391
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.08 E-value=0.1 Score=49.34 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhccc
Q 003367 107 IISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
+|+|.|..|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999843
No 392
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.05 E-value=0.048 Score=52.62 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=22.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.-.+++|+|+.|+|||||++.+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3469999999999999999999874
No 393
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=93.05 E-value=0.15 Score=54.73 Aligned_cols=84 Identities=18% Similarity=0.159 Sum_probs=47.4
Q ss_pred cEEEEEecCCCcHHHHH-HHHhcccccccCCCc-EEEEEeCCCC-CHHHHHHHHHHHhcc-------cchhh---h--hH
Q 003367 106 PIISILGTGGVGKTTLA-RLVFNEVKVDAHFDK-RIWVCFSDPV-DEIRVAKAILESFRD-------VVSAV---A--AF 170 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~---~--~~ 170 (826)
+.++|+|..|+|||+|| ..+++.. .-+. ++++-+.+.. .+.++...+.+.=.. ...+. . -.
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 251 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIA 251 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHH
Confidence 45899999999999996 5777743 2343 4566666643 344555555442110 00111 0 01
Q ss_pred HHHHHHHHHHh--cCCceeEEeccC
Q 003367 171 DTLLRHIEKSV--KGKKFLLVLDDV 193 (826)
Q Consensus 171 ~~~~~~l~~~l--~~k~~LlVlDdv 193 (826)
....-.+.+++ +++.+||++||+
T Consensus 252 ~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 252 PYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeccH
Confidence 11112223333 589999999998
No 394
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.00 E-value=0.052 Score=53.79 Aligned_cols=23 Identities=35% Similarity=0.660 Sum_probs=21.3
Q ss_pred ccEEEEEecCCCcHHHHHHHHhc
Q 003367 105 LPIISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~ 127 (826)
..+|+|+|+.|.||||+++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999996
No 395
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.00 E-value=0.12 Score=55.29 Aligned_cols=88 Identities=9% Similarity=0.111 Sum_probs=49.7
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccC--CCcEEEEEeCCCC-CHHHHHHHHHHHhccc-------chhhh-----hH
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAH--FDKRIWVCFSDPV-DEIRVAKAILESFRDV-------VSAVA-----AF 170 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~-----~~ 170 (826)
+.++|.|.+|+|||+|+.+++++...... =+.++++-+.+.. .+.++...+...=... ..+.. ..
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~ 232 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVT 232 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHH
Confidence 35789999999999999999986543211 1345566555533 3455565555431100 01110 11
Q ss_pred HHHHHHHHHHh---cCCceeEEeccC
Q 003367 171 DTLLRHIEKSV---KGKKFLLVLDDV 193 (826)
Q Consensus 171 ~~~~~~l~~~l---~~k~~LlVlDdv 193 (826)
....-.+.+++ +++.+|+++||+
T Consensus 233 ~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 233 PRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 11122233333 479999999997
No 396
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.97 E-value=0.047 Score=52.72 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=21.0
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
..|.|.|+.|+||||+|+.++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999874
No 397
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.97 E-value=0.047 Score=52.96 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=21.5
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
...|.|.|+.|+||||+|+.++..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999974
No 398
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.96 E-value=0.03 Score=53.92 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHhccc
Q 003367 107 IISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
+|+|.|..|+||||+|+.+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 78999999999999999998743
No 399
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.96 E-value=0.052 Score=53.57 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.5
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
..+|+|.|..|.|||||++.++..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999873
No 400
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.92 E-value=0.12 Score=54.03 Aligned_cols=38 Identities=26% Similarity=0.259 Sum_probs=28.1
Q ss_pred HHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcc
Q 003367 87 KKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 87 ~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
..++.+.+.... ....+|+|+|.+|+|||||+.+++..
T Consensus 65 ~~~~~~~~~~~~----~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 65 AQQLLLRLLPDS----GNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHHHGGGC----CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhHhhc----CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 444555554322 25679999999999999999999864
No 401
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=92.88 E-value=0.63 Score=45.32 Aligned_cols=101 Identities=21% Similarity=0.265 Sum_probs=54.2
Q ss_pred EEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcc---c-ch------------hhhhHH
Q 003367 108 ISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRD---V-VS------------AVAAFD 171 (826)
Q Consensus 108 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~---~-~~------------~~~~~~ 171 (826)
+.|+|..|.|||.+|..++... . ..++++. . ...+..++.+.+.. . .. .....+
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~----~-~~~liv~-P----~~~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~ 180 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL----S-TPTLIVV-P----TLALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYD 180 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS----C-SCEEEEE-S----SHHHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHc----C-CCEEEEe-C----CHHHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHH
Confidence 7899999999999999888732 1 2344443 1 12233333333321 1 00 001122
Q ss_pred HHHHHHHHHhcCCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecc
Q 003367 172 TLLRHIEKSVKGKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTR 222 (826)
Q Consensus 172 ~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR 222 (826)
.+..... .+.++--+||+|+++.-....+..+...+. ...++.+|..
T Consensus 181 ~l~~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSAT 227 (237)
T 2fz4_A 181 SAYVNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTAT 227 (237)
T ss_dssp HHHHTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEES
T ss_pred HHHhhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEecC
Confidence 3332222 233445699999997765566777666553 2334555543
No 402
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.88 E-value=0.056 Score=51.53 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=21.7
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
..+|+|.|+.|+||||+|+.++..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999984
No 403
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.82 E-value=0.077 Score=60.11 Aligned_cols=44 Identities=18% Similarity=0.297 Sum_probs=37.0
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhccc
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
..++|.+..++.+...+... ..+.|+|+.|+||||||+.++...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhccC
Confidence 45899999998888887643 368999999999999999999843
No 404
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.79 E-value=0.036 Score=51.02 Aligned_cols=24 Identities=42% Similarity=0.530 Sum_probs=21.5
Q ss_pred cEEEEEecCCCcHHHHHHHHhccc
Q 003367 106 PIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
++|+|+|..|.|||||++.+..-.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998743
No 405
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.78 E-value=0.045 Score=51.36 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHhccc
Q 003367 107 IISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
+++|+|..|+|||||++.++...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999998743
No 406
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.77 E-value=0.044 Score=54.02 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=21.0
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+|+|+|+.|.||||+++.++..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999973
No 407
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.76 E-value=0.06 Score=49.67 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=22.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
..++++|+|..|+|||||+..+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 4579999999999999999999874
No 408
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.75 E-value=0.35 Score=52.08 Aligned_cols=51 Identities=14% Similarity=0.061 Sum_probs=34.9
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHH
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILES 159 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 159 (826)
-.++.|.|.+|+||||+|.+++.+...+ -..++|++... +..++...+...
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~~~ 247 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLIVT 247 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHHHH
Confidence 3589999999999999999998854332 23566665544 444555555443
No 409
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.70 E-value=0.078 Score=49.72 Aligned_cols=40 Identities=13% Similarity=0.158 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhccc
Q 003367 85 EEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 85 ~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
.-+..+..++..- +.-..+.|+|++|+||||+|.++++..
T Consensus 43 ~f~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 43 TFLGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3355566666431 123469999999999999999999853
No 410
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.70 E-value=0.12 Score=52.86 Aligned_cols=24 Identities=46% Similarity=0.484 Sum_probs=22.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHhc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~ 127 (826)
...+|+|+|..|.|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446999999999999999999987
No 411
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.67 E-value=0.44 Score=52.54 Aligned_cols=52 Identities=12% Similarity=0.017 Sum_probs=36.7
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHH
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILES 159 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 159 (826)
-.++.|.|.+|+||||+|.+++.+...+ +=..++|++... +..++...++..
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~ 293 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGL 293 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHH
Confidence 4589999999999999999998754322 123577777654 456666666544
No 412
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.63 E-value=0.12 Score=53.74 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.1
Q ss_pred CccEEEEEecCCCcHHHHHHHHhccc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
...+|+|+|..|+||||+++.++...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 45799999999999999999999843
No 413
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.63 E-value=0.18 Score=63.73 Aligned_cols=84 Identities=19% Similarity=0.171 Sum_probs=56.2
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccch-----hhhhHHHHHHHHH
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVS-----AVAAFDTLLRHIE 178 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 178 (826)
.-+++.|+|.+|+||||||.+++.... ..-..++|++.....+... ++.++.... ...+.+++.+.++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a--~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 346999999999999999999988543 2234688888877766542 455553211 1234455555555
Q ss_pred HHh-cCCceeEEeccCC
Q 003367 179 KSV-KGKKFLLVLDDVW 194 (826)
Q Consensus 179 ~~l-~~k~~LlVlDdv~ 194 (826)
... +.+.-+||+|.+.
T Consensus 455 ~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCcEEEECCHH
Confidence 444 3456799999984
No 414
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.63 E-value=0.19 Score=62.58 Aligned_cols=85 Identities=19% Similarity=0.178 Sum_probs=56.4
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccch-----hhhhHHHHHHHHH
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVS-----AVAAFDTLLRHIE 178 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 178 (826)
.-+++.|+|.+|+||||||.+++.... ..-..++|++.....+.. .++.++.... ...+.+++.+.+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~--~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--HhCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 346999999999999999999987543 233568899888877654 2455543321 1123455555555
Q ss_pred HHh-cCCceeEEeccCCC
Q 003367 179 KSV-KGKKFLLVLDDVWS 195 (826)
Q Consensus 179 ~~l-~~k~~LlVlDdv~~ 195 (826)
... +.+.-+||+|.+..
T Consensus 455 ~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHTCCSEEEESCSTT
T ss_pred HHHHhcCCCEEEECCHHH
Confidence 443 34566999999843
No 415
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.63 E-value=0.055 Score=52.18 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 003367 107 IISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.|+|.|+.|+||||+|+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999873
No 416
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.61 E-value=0.061 Score=51.67 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=22.1
Q ss_pred ccEEEEEecCCCcHHHHHHHHhccc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
..+|.|.|+.|+||||+|+.++...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998743
No 417
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=92.57 E-value=0.18 Score=54.11 Aligned_cols=82 Identities=24% Similarity=0.212 Sum_probs=47.2
Q ss_pred cEEEEEecCCCcHHHHH-HHHhcccccccCCCc-EEEEEeCCCC-CHHHHHHHHHHHhccc-------chhhhhH-----
Q 003367 106 PIISILGTGGVGKTTLA-RLVFNEVKVDAHFDK-RIWVCFSDPV-DEIRVAKAILESFRDV-------VSAVAAF----- 170 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~----- 170 (826)
+.++|.|..|+|||+|| ..+++.. .-+. ++++-+.+.. .+.++...+.+.=... ..+....
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a 238 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLA 238 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHH
Confidence 45899999999999995 4777743 2342 4566666644 3445555554421100 0111001
Q ss_pred ----HHHHHHHHHHhcCCceeEEeccC
Q 003367 171 ----DTLLRHIEKSVKGKKFLLVLDDV 193 (826)
Q Consensus 171 ----~~~~~~l~~~l~~k~~LlVlDdv 193 (826)
-.+.+.++. +++.+||++||+
T Consensus 239 ~~~a~tiAEyfrd--~G~dVLl~~Dsl 263 (502)
T 2qe7_A 239 PYAGCAMGEYFMY--KGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHHHHHT--TTCEEEEEEECH
T ss_pred HHHHHHHHHHHHH--cCCcEEEEEecH
Confidence 122333333 589999999998
No 418
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.50 E-value=0.068 Score=52.34 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.9
Q ss_pred cEEEEEecCCCcHHHHHHHHhc
Q 003367 106 PIISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~ 127 (826)
.+++|+|+.|.|||||.+.++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6999999999999999999986
No 419
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.47 E-value=0.059 Score=51.96 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhc
Q 003367 107 IISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~ 127 (826)
.|+|.|+.|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999987
No 420
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.47 E-value=0.065 Score=51.75 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.9
Q ss_pred ccEEEEEecCCCcHHHHHHHHhc
Q 003367 105 LPIISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~ 127 (826)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999975
No 421
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.44 E-value=0.062 Score=53.13 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.8
Q ss_pred ccEEEEEecCCCcHHHHHHHHhc
Q 003367 105 LPIISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~ 127 (826)
-.+++|+|+.|+|||||++.++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 35899999999999999999984
No 422
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.41 E-value=0.068 Score=54.60 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=22.3
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
..++|+|+|+.|+||||||..++..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999984
No 423
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.39 E-value=0.067 Score=51.84 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=20.6
Q ss_pred cEEEEEecCCCcHHHHHHHHhc
Q 003367 106 PIISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~ 127 (826)
.+++|+|+.|.|||||++.++.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999986
No 424
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.37 E-value=0.059 Score=55.27 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=21.3
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+|+|.|+.|+||||||+.++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999999974
No 425
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.37 E-value=0.046 Score=53.42 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=16.2
Q ss_pred cEEEEEecCCCcHHHHHHHHh-c
Q 003367 106 PIISILGTGGVGKTTLARLVF-N 127 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~-~ 127 (826)
.+++|+|+.|+|||||++.+. .
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 589999999999999999999 5
No 426
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.35 E-value=0.81 Score=49.60 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=34.7
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHH
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAIL 157 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 157 (826)
-.++.|.|.+|+||||+|..++...... .-..++|++... +...+...+.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHH
Confidence 3589999999999999999999854321 123577776554 4455555554
No 427
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.22 E-value=0.69 Score=49.95 Aligned_cols=52 Identities=12% Similarity=0.011 Sum_probs=36.3
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHH
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILES 159 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 159 (826)
-.++.|.|.+|+||||+|..++...... .-..++|++... +..++...++..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE~--~~~~l~~R~~~~ 251 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLEM--PAAQLTLRMMCS 251 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECCC--CHHHHHHHHHHH
Confidence 3589999999999999999998854321 123577776654 455666666544
No 428
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.20 E-value=0.067 Score=51.11 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 003367 107 IISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
+|+|.|+.|+||||+|+.++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999999873
No 429
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.19 E-value=0.11 Score=55.81 Aligned_cols=44 Identities=23% Similarity=0.299 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCCCCC---CCCCccEEEEEecCCCcHHHHHHHHhccc
Q 003367 86 EKKTIIDLLLGSSSQ---EKMSLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 86 ~~~~l~~~L~~~~~~---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
..+++.+++...... .....++|+|+|.+|+||||+|.+++...
T Consensus 77 ~~~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 77 VYEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp HHHHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345566666543110 11345799999999999999999998744
No 430
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=92.15 E-value=0.13 Score=51.51 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=28.7
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCC
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDP 146 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 146 (826)
++|+|.|-||+||||+|..++.-.. ..-..+.-|+....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la--~~G~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH--AMGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH--TTTCCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH--HCCCcEEEEcCCCC
Confidence 5788899999999999999987443 22235667776543
No 431
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.14 E-value=0.29 Score=47.28 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=19.3
Q ss_pred ccEEEEEecCCCcHHHHHHHHhccc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
-..|.|-|+.|+||||+++.+++..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999854
No 432
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.12 E-value=0.063 Score=51.25 Aligned_cols=23 Identities=39% Similarity=0.379 Sum_probs=20.9
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+++|+|+.|.|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999863
No 433
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.10 E-value=0.071 Score=52.09 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=20.7
Q ss_pred cEEEEEecCCCcHHHHHHHHhc
Q 003367 106 PIISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~ 127 (826)
.+++|+|+.|.|||||++.++.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999986
No 434
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=92.08 E-value=0.27 Score=52.67 Aligned_cols=82 Identities=23% Similarity=0.248 Sum_probs=48.3
Q ss_pred cEEEEEecCCCcHHHHH-HHHhcccccccCCC-cEEEEEeCCCC-CHHHHHHHHHHHhccc----------chhhhh---
Q 003367 106 PIISILGTGGVGKTTLA-RLVFNEVKVDAHFD-KRIWVCFSDPV-DEIRVAKAILESFRDV----------VSAVAA--- 169 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~----------~~~~~~--- 169 (826)
+.++|.|..|+|||+|| ..+.+. ..-+ .++++-+.+.. .+.++...+.+.=... .+....
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a 238 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLA 238 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHH
T ss_pred CEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHH
Confidence 45899999999999996 567763 2223 35677777654 3445555554431100 011000
Q ss_pred ---HHHHHHHHHHHhcCCceeEEeccC
Q 003367 170 ---FDTLLRHIEKSVKGKKFLLVLDDV 193 (826)
Q Consensus 170 ---~~~~~~~l~~~l~~k~~LlVlDdv 193 (826)
.-.+.+.+++ +++.+||++||+
T Consensus 239 ~~~a~tiAEyfrd--~G~dVLli~Dsl 263 (513)
T 3oaa_A 239 PYAGCAMGEYFRD--RGEDALIIYDDL 263 (513)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEEEETH
T ss_pred HHHHHHHHHHHHh--cCCCEEEEecCh
Confidence 1123344443 689999999998
No 435
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.06 E-value=0.048 Score=55.24 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=19.3
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
+..+|+|.|..|+||||+|+.+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999873
No 436
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.05 E-value=0.073 Score=51.62 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=21.7
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
..+|+|.|+.|.||||+|+.++..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999873
No 437
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.00 E-value=0.084 Score=52.63 Aligned_cols=27 Identities=37% Similarity=0.432 Sum_probs=23.1
Q ss_pred CCccEEEEEecCCCcHHHHHHHHhccc
Q 003367 103 MSLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 103 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
....++.+.|.||+||||++..++...
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 356788999999999999999998643
No 438
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=91.99 E-value=0.065 Score=50.26 Aligned_cols=109 Identities=12% Similarity=-0.004 Sum_probs=55.6
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccch--hhhhHHHHHHHHHHHhc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVS--AVAAFDTLLRHIEKSVK 182 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~ 182 (826)
-++..++|..|.||||.+..++++...++ . .++.+....+ .+.-...+.+.++.... ...+.+ .+.+.+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g-~-kV~v~k~~~d--~r~~~~~i~s~~g~~~~a~~~~~~~----~i~~~~~ 79 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAK-Q-KIQVFKPEID--NRYSKEDVVSHMGEKEQAVAIKNSR----EILKYFE 79 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTT-C-CEEEEEEC---------CEEECTTSCEEECEEESSST----HHHHHCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCC-C-EEEEEEeccC--ccchHHHHHhhcCCceeeEeeCCHH----HHHHHHh
Confidence 36899999999999999998888543222 2 2333332211 11111122223321100 011111 2233333
Q ss_pred CCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccH
Q 003367 183 GKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKE 224 (826)
Q Consensus 183 ~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~ 224 (826)
+.-=+|++|.+..-+.+..+.+....+ .|..||+|.++.
T Consensus 80 ~~~dvViIDEaqfl~~~~v~~l~~l~~---~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 80 EDTEVIAIDEVQFFDDEIVEIVNKIAE---SGRRVICAGLDM 118 (191)
T ss_dssp TTCSEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEEECSB
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEEeccc
Confidence 333499999985544455554443332 267899998753
No 439
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.95 E-value=0.08 Score=50.94 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 003367 107 IISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.|+|.|+.|+||||+|+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999873
No 440
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=91.95 E-value=0.18 Score=54.27 Aligned_cols=82 Identities=18% Similarity=0.191 Sum_probs=47.0
Q ss_pred cEEEEEecCCCcHHHHH-HHHhcccccccCCC-cEEEEEeCCCCC-HHHHHHHHHHHhcc----------cchhh--h--
Q 003367 106 PIISILGTGGVGKTTLA-RLVFNEVKVDAHFD-KRIWVCFSDPVD-EIRVAKAILESFRD----------VVSAV--A-- 168 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~~~~~~-~~~~~~~i~~~l~~----------~~~~~--~-- 168 (826)
+.++|.|..|+|||+|| ..+++.. .-+ .++++-+.+..+ +.++...+...=.. +.+.. .
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 239 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLA 239 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHH
Confidence 45899999999999995 5777743 134 346666666433 33444444321100 00000 1
Q ss_pred --hHHHHHHHHHHHhcCCceeEEeccC
Q 003367 169 --AFDTLLRHIEKSVKGKKFLLVLDDV 193 (826)
Q Consensus 169 --~~~~~~~~l~~~l~~k~~LlVlDdv 193 (826)
..-.+.+.++. +++.+||++||+
T Consensus 240 ~~~a~tiAEyfrd--~G~dVLli~Dsl 264 (507)
T 1fx0_A 240 PYTGAALAEYFMY--RERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEEEECH
T ss_pred HHHHHHHHHHHHH--cCCcEEEEEecH
Confidence 11123444544 589999999998
No 441
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.94 E-value=0.16 Score=48.46 Aligned_cols=104 Identities=14% Similarity=0.183 Sum_probs=56.2
Q ss_pred EEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccc----------hhhhhHHHHHHH
Q 003367 107 IISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVV----------SAVAAFDTLLRH 176 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----------~~~~~~~~~~~~ 176 (826)
.|.+.|.||+||||+|..++.....++ + .+..+.+....+... ...+..+.... ....+.+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G-~-~V~v~d~D~q~~~~~--~al~~gl~~~~~~~~~~~~~~~~e~~l~~~--- 80 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQG-V-RVMAGVVETHGRAET--EALLNGLPQQPLLRTEYRGMTLEEMDLDAL--- 80 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTT-C-CEEEEECCCTTCHHH--HHHHTTSCBCCCEEEEETTEEEEECCHHHH---
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCC-C-CEEEEEeCCCCChhH--HHHhcCccccCcceeecCCcccccccHHHH---
Confidence 478999999999999999988543222 2 344555544323221 11222222110 011222222
Q ss_pred HHHHhcCCceeEEeccCCCC------ChhhHHHHHhhhcCCCCCcEEEEecccH
Q 003367 177 IEKSVKGKKFLLVLDDVWSG------NPTKWEELVSTLKFGSPESRILVTTRKE 224 (826)
Q Consensus 177 l~~~l~~k~~LlVlDdv~~~------~~~~~~~l~~~~~~~~~~s~iivTtR~~ 224 (826)
+..+.=++|+|++-.. ....|+++...++ .|-.+++|+.-.
T Consensus 81 ----L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~---sgidVitT~Nlq 127 (228)
T 2r8r_A 81 ----LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA---AGIDVYTTVNVQ 127 (228)
T ss_dssp ----HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH---TTCEEEEEEEGG
T ss_pred ----HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc---CCCCEEEEcccc
Confidence 1224569999987421 1236777766544 355788887744
No 442
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.93 E-value=0.078 Score=53.42 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=21.2
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
++|+|+|+.|+||||||..++..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 58999999999999999999973
No 443
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.92 E-value=0.073 Score=54.23 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=21.2
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
++|.|+|+.|+||||||+.++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999973
No 444
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.91 E-value=0.13 Score=57.22 Aligned_cols=84 Identities=17% Similarity=0.152 Sum_probs=46.6
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhccc---------------chhh-h
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDV---------------VSAV-A 168 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~---------------~~~~-~ 168 (826)
-.+++|.|..|+|||||++.++...... -..++++...+. ...+...+ ..++.. .+.. .
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~--G~~vi~~~~ee~--~~~l~~~~-~~~g~~~~~~~~~g~~~~~~~~p~~LS 355 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACAN--KERAILFAYEES--RAQLLRNA-YSWGMDFEEMERQNLLKIVCAYPESAG 355 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEESSSC--HHHHHHHH-HTTSCCHHHHHHTTSEEECCCCGGGSC
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhC--CCCEEEEEEeCC--HHHHHHHH-HHcCCCHHHHHhCCCEEEEEeccccCC
Confidence 3589999999999999999998743221 123456554432 23333222 112111 0111 1
Q ss_pred hHHHHHHHHHHHhcCCceeEEeccC
Q 003367 169 AFDTLLRHIEKSVKGKKFLLVLDDV 193 (826)
Q Consensus 169 ~~~~~~~~l~~~l~~k~~LlVlDdv 193 (826)
..+.....+...+..+.-++|+|-+
T Consensus 356 ~g~~q~~~~a~~l~~~p~llilDp~ 380 (525)
T 1tf7_A 356 LEDHLQIIKSEINDFKPARIAIDSL 380 (525)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECH
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCh
Confidence 2223334445556677889999954
No 445
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.87 E-value=0.24 Score=43.04 Aligned_cols=47 Identities=23% Similarity=0.251 Sum_probs=36.8
Q ss_pred ccc--cccccccCCCCccEEEccCCCCccccch-hhcCCCCCcEEeccCCCCC
Q 003367 479 SIA--RLPRNIKKLKHLRYLNLSNNDAIYELPE-ALCDLCNLQTLDVSNCGNL 528 (826)
Q Consensus 479 ~~~--~lp~~i~~l~~L~~L~Ls~~~~~~~lp~-~i~~L~~L~~L~L~~~~~~ 528 (826)
.+. .+|..+. .+|++|+|++|. +..+|. .|..+++|++|+|++|...
T Consensus 19 ~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 19 GLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp CCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCee
Confidence 455 6776543 479999999999 777764 5788999999999999743
No 446
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.78 E-value=0.08 Score=51.34 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 003367 107 IISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.|+|.|+.|+||||+|+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 447
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.78 E-value=0.09 Score=51.35 Aligned_cols=24 Identities=29% Similarity=0.257 Sum_probs=21.6
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
...|.|.|+.|+||||+|+.++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999984
No 448
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=91.78 E-value=0.19 Score=54.35 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=39.1
Q ss_pred HHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCC-HHHHHHHH
Q 003367 89 TIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVD-EIRVAKAI 156 (826)
Q Consensus 89 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i 156 (826)
++++.|..-. .-+.++|.|..|+|||+|+.++++.. +-+.++++-+.+..+ +.++...+
T Consensus 216 rvID~l~Pig-----kGqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQA-----KGGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEE-----TTCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcc-----cCCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHH
Confidence 3455554332 23468999999999999999998732 235677777776554 44455544
No 449
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.72 E-value=0.094 Score=52.75 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=22.3
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
..++|.|+|+.|+||||||..++..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 3568999999999999999999973
No 450
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.71 E-value=0.09 Score=49.50 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.2
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.-.|+|+|..|+|||||++.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999999874
No 451
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=91.70 E-value=0.24 Score=53.77 Aligned_cols=58 Identities=17% Similarity=0.220 Sum_probs=38.4
Q ss_pred HHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCC-CCHHHHHHH
Q 003367 89 TIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDP-VDEIRVAKA 155 (826)
Q Consensus 89 ~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~ 155 (826)
++++.|..-. .-+.++|.|..|+|||+|+.++++.. +-+.++++-+.+. ..+.+++..
T Consensus 221 rvID~l~Pig-----rGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 221 RVIDTFFPVT-----KGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHHH
T ss_pred hhhhccCCcc-----CCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHH
Confidence 3566665432 23568999999999999999998842 2356677766654 233444444
No 452
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.64 E-value=0.084 Score=52.52 Aligned_cols=22 Identities=41% Similarity=0.670 Sum_probs=20.6
Q ss_pred cEEEEEecCCCcHHHHHHHHhc
Q 003367 106 PIISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~ 127 (826)
.+++|+|+.|.|||||++.++.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999986
No 453
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.64 E-value=0.084 Score=52.81 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=20.6
Q ss_pred cEEEEEecCCCcHHHHHHHHhc
Q 003367 106 PIISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~ 127 (826)
.+++|+|+.|.|||||++.++.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999976
No 454
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=91.57 E-value=0.14 Score=51.88 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=28.7
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCC
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDP 146 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 146 (826)
++|+|.|-||+||||+|..++.... ..-..+.-|++...
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La--~~G~rVlliD~D~q 41 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALA--EMGKKVMIVGCDPK 41 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEEECSS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHH--HCCCeEEEEecCCC
Confidence 6888899999999999999987443 22234666776543
No 455
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.57 E-value=0.097 Score=51.00 Aligned_cols=24 Identities=29% Similarity=0.181 Sum_probs=22.0
Q ss_pred CccEEEEEecCCCcHHHHHHHHhc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~ 127 (826)
...+|+|.|..|.||||+++.++.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457999999999999999999987
No 456
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.55 E-value=0.075 Score=50.94 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=20.9
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+++|+|+.|.|||||++.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999863
No 457
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.52 E-value=0.32 Score=47.38 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=17.8
Q ss_pred cEEEEEecCCCcHHHHHHHHhc
Q 003367 106 PIISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~ 127 (826)
+.+.|.|..|.||||+...+.-
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHh
Confidence 4799999999999987665543
No 458
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.51 E-value=0.089 Score=52.26 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=21.0
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+++|+|+.|.|||||++.++.-
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Confidence 58999999999999999999863
No 459
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.50 E-value=0.09 Score=51.55 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=21.0
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+++|+|+.|.|||||.+.++.-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999863
No 460
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.48 E-value=0.09 Score=52.39 Aligned_cols=22 Identities=41% Similarity=0.789 Sum_probs=20.7
Q ss_pred cEEEEEecCCCcHHHHHHHHhc
Q 003367 106 PIISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~ 127 (826)
.+++|+|+.|.|||||++.++.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999986
No 461
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.45 E-value=0.084 Score=49.31 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 003367 107 IISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999873
No 462
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.45 E-value=0.1 Score=47.73 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.6
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999873
No 463
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.44 E-value=0.31 Score=54.04 Aligned_cols=39 Identities=23% Similarity=0.339 Sum_probs=27.0
Q ss_pred ccEEEEEecCCCcHHHHHHHHh-cccccccCCCcEEEEEeCC
Q 003367 105 LPIISILGTGGVGKTTLARLVF-NEVKVDAHFDKRIWVCFSD 145 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~-~~~~~~~~f~~~~wv~~~~ 145 (826)
-.+++|+|..|.|||||++.++ .-.. ..-...++++..+
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ll~Gl~--~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQFLYNGII--EFDEPGVFVTFEE 78 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH--HHCCCEEEEESSS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH--hCCCCEEEEEEeC
Confidence 3589999999999999999952 2111 1124577777554
No 464
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=91.42 E-value=0.26 Score=52.94 Aligned_cols=97 Identities=19% Similarity=0.238 Sum_probs=52.9
Q ss_pred HHHHHcCCCCCCCCCccEEEEEecCCCcHHHHH-HHHhccccc----ccCCC-cEEEEEeCCCC-CHHHHHHHHHHHhcc
Q 003367 90 IIDLLLGSSSQEKMSLPIISILGTGGVGKTTLA-RLVFNEVKV----DAHFD-KRIWVCFSDPV-DEIRVAKAILESFRD 162 (826)
Q Consensus 90 l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~----~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~ 162 (826)
.++.|..-. .-+.++|+|..|+|||+|| ..+++.... ..+-+ .++++-+.+.. .+.++.+.+...=..
T Consensus 152 aID~l~Pig-----rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m 226 (510)
T 2ck3_A 152 AVDSLVPIG-----RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAM 226 (510)
T ss_dssp HHHHHSCCB-----TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCG
T ss_pred eeccccccc-----cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCc
Confidence 455555432 2245899999999999995 466664321 01234 35677776644 344555555442110
Q ss_pred c-------chhh---hh--HH----HHHHHHHHHhcCCceeEEeccC
Q 003367 163 V-------VSAV---AA--FD----TLLRHIEKSVKGKKFLLVLDDV 193 (826)
Q Consensus 163 ~-------~~~~---~~--~~----~~~~~l~~~l~~k~~LlVlDdv 193 (826)
. ..+. .. .. .+.+.++. +++.+||++||+
T Consensus 227 ~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dsl 271 (510)
T 2ck3_A 227 KYTIVVSATASDAAPLQYLAPYSGCSMGEYFRD--NGKHALIIYDDL 271 (510)
T ss_dssp GGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETH
T ss_pred ccceEEEECCCCCHHHHHHHHHHHHHHHHHHHH--cCCcEEEEEcCH
Confidence 0 0011 00 11 22333333 589999999998
No 465
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.41 E-value=0.097 Score=48.79 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.9
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
+.|.|.|..|+||||||.+++..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999999873
No 466
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.41 E-value=0.097 Score=51.67 Aligned_cols=22 Identities=27% Similarity=0.676 Sum_probs=20.8
Q ss_pred cEEEEEecCCCcHHHHHHHHhc
Q 003367 106 PIISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~ 127 (826)
.+++|+|..|.|||||++.++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 467
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.38 E-value=0.093 Score=52.05 Aligned_cols=22 Identities=32% Similarity=0.601 Sum_probs=20.6
Q ss_pred cEEEEEecCCCcHHHHHHHHhc
Q 003367 106 PIISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~ 127 (826)
.+++|+|+.|.|||||.+.++.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 468
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.33 E-value=0.25 Score=46.77 Aligned_cols=109 Identities=15% Similarity=0.001 Sum_probs=53.5
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccch--hhhhHHHHHHHHHHHhc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVS--AVAAFDTLLRHIEKSVK 182 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~ 182 (826)
-.+..++|.-|.||||.|...+.+...++ ..++.+..... .+.-...+++.++.... ...+.+ .+.+.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g--~kVli~k~~~d--~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~~ 99 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAK--QHAIVFKPCID--NRYSEEDVVSHNGLKVKAVPVSASK----DIFKHIT 99 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTT--CCEEEEECC-------------------CCEEECSSGG----GGGGGCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCC--CEEEEEEeccC--CcchHHHHHhhcCCeeEEeecCCHH----HHHHHHh
Confidence 36889999999999999998888543322 23443432221 11112234444432111 001111 1222222
Q ss_pred CCceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccH
Q 003367 183 GKKFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKE 224 (826)
Q Consensus 183 ~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~ 224 (826)
++--+|++|.+.--+.+.++.+....+ .|-.||+|-++.
T Consensus 100 ~~~dvViIDEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 100 EEMDVIAIDEVQFFDGDIVEVVQVLAN---RGYRVIVAGLDQ 138 (214)
T ss_dssp SSCCEEEECCGGGSCTTHHHHHHHHHH---TTCEEEEEECSB
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHhh---CCCEEEEEeccc
Confidence 333499999996555555544433222 366899999854
No 469
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.32 E-value=0.096 Score=51.56 Aligned_cols=23 Identities=39% Similarity=0.684 Sum_probs=21.0
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+++|+|..|.|||||++.++.-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999763
No 470
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.28 E-value=0.11 Score=52.48 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=21.1
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.++.|+|.+|+||||||..++..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999863
No 471
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.26 E-value=0.59 Score=45.33 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=22.9
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcccc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEVK 130 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 130 (826)
..+|.|.|+.|+||||+++.++....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998543
No 472
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.25 E-value=0.34 Score=60.39 Aligned_cols=83 Identities=19% Similarity=0.185 Sum_probs=57.6
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhcccchh-----hhhHHHHHHHHH
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDVVSA-----VAAFDTLLRHIE 178 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 178 (826)
.-++|-|+|+.|.||||||.++... ....=...+|+++.+..+..- ++.++.+... .+..++....+.
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~--~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 3479999999999999999999973 344556788999888777653 6666654221 122244444444
Q ss_pred HHh-cCCceeEEeccC
Q 003367 179 KSV-KGKKFLLVLDDV 193 (826)
Q Consensus 179 ~~l-~~k~~LlVlDdv 193 (826)
..+ .+..-+||+|-|
T Consensus 1503 ~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHTCCSEEEESCS
T ss_pred HHHHcCCCCEEEEccH
Confidence 444 356679999998
No 473
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.22 E-value=0.1 Score=52.02 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=21.2
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+++|+|+.|.|||||++.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999873
No 474
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.22 E-value=0.099 Score=51.70 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=21.0
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+++|+|+.|.|||||.+.++.-
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999863
No 475
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.19 E-value=0.5 Score=45.36 Aligned_cols=27 Identities=30% Similarity=0.382 Sum_probs=23.5
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVK 130 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 130 (826)
....|.|.|..|+||||+++.+.+...
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999999998543
No 476
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=91.13 E-value=0.24 Score=51.12 Aligned_cols=42 Identities=26% Similarity=0.231 Sum_probs=30.7
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCC
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPV 147 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 147 (826)
..+++.+.|-||+||||+|..++.... ..-..+.-|+.....
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la--~~g~~vllid~D~~~ 56 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLA--KVRRSVLLLSTDPAH 56 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHT--TSSSCEEEEECCSSC
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHH--hCCCcEEEEECCCCC
Confidence 457899999999999999999987432 333456667665443
No 477
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=91.13 E-value=0.083 Score=59.44 Aligned_cols=51 Identities=20% Similarity=0.234 Sum_probs=34.1
Q ss_pred CccccchHHHHHHHHHHcCCCCCC-----CCCccEEEEEecCCCcHHHHHHHHhcc
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQE-----KMSLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~-----~~~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
+.++|.+..++.+.-.+....... -.+-.-|.++|.+|+|||+||+.+++.
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTT
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHh
Confidence 568999987776655554321000 000114889999999999999999974
No 478
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.10 E-value=0.1 Score=51.80 Aligned_cols=23 Identities=30% Similarity=0.637 Sum_probs=21.0
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+++|+|+.|.|||||++.++.-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999863
No 479
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.10 E-value=0.099 Score=51.36 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=20.6
Q ss_pred cEEEEEecCCCcHHHHHHHHhc
Q 003367 106 PIISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~ 127 (826)
.+++|+|..|.|||||++.++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999976
No 480
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=91.09 E-value=0.23 Score=51.55 Aligned_cols=43 Identities=28% Similarity=0.332 Sum_probs=30.2
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCC
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDP 146 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 146 (826)
..+++.+.|.||+||||+|..++........-..+.-|+....
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~ 59 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPA 59 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 4589999999999999999999874320022335666666543
No 481
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.09 E-value=0.099 Score=53.37 Aligned_cols=22 Identities=41% Similarity=0.543 Sum_probs=20.6
Q ss_pred cEEEEEecCCCcHHHHHHHHhc
Q 003367 106 PIISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~ 127 (826)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 482
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.04 E-value=0.11 Score=51.24 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=21.0
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+++|+|+.|.|||||.+.++.-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999999863
No 483
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.00 E-value=0.62 Score=44.41 Aligned_cols=25 Identities=36% Similarity=0.488 Sum_probs=22.3
Q ss_pred cEEEEEecCCCcHHHHHHHHhcccc
Q 003367 106 PIISILGTGGVGKTTLARLVFNEVK 130 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~~~ 130 (826)
..|.|-|..|+||||+++.++....
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999998544
No 484
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.00 E-value=0.11 Score=52.03 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=21.0
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+++|+|..|.|||||++.++.-
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999763
No 485
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=90.86 E-value=1.2 Score=49.86 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=21.0
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+++|+|+.|.|||||++.++.-
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999763
No 486
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.84 E-value=0.11 Score=51.75 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=20.6
Q ss_pred cEEEEEecCCCcHHHHHHHHhc
Q 003367 106 PIISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~ 127 (826)
.+++|+|..|.|||||++.++.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999976
No 487
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.84 E-value=0.12 Score=46.69 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.5
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
+.|+|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999874
No 488
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.83 E-value=0.11 Score=51.28 Aligned_cols=23 Identities=39% Similarity=0.720 Sum_probs=21.1
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+++|+|+.|.|||||.+.++.-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999863
No 489
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.82 E-value=0.13 Score=50.34 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=22.4
Q ss_pred CCccEEEEEecCCCcHHHHHHHHhc
Q 003367 103 MSLPIISILGTGGVGKTTLARLVFN 127 (826)
Q Consensus 103 ~~~~vv~I~G~gGiGKTtLa~~v~~ 127 (826)
....+|+|.|+.|.||||+++.++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3556899999999999999999987
No 490
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.80 E-value=0.21 Score=48.47 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=23.2
Q ss_pred CccEEEEEecCCCcHHHHHHHHhcccc
Q 003367 104 SLPIISILGTGGVGKTTLARLVFNEVK 130 (826)
Q Consensus 104 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 130 (826)
...+|+|.|+.|+||||+++.++....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999998543
No 491
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.79 E-value=0.11 Score=52.02 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=21.1
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.+++|+|+.|.|||||++.++.-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999999873
No 492
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.72 E-value=0.12 Score=49.04 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.7
Q ss_pred cEEEEEecCCCcHHHHHHHHhcc
Q 003367 106 PIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 106 ~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
-.|+|+|..|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 493
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.71 E-value=0.12 Score=52.31 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=21.6
Q ss_pred ccEEEEEecCCCcHHHHHHHHhcc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
-.+++|+|+.|.|||||++.+..-
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhh
Confidence 358999999999999999999873
No 494
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=90.61 E-value=0.42 Score=50.74 Aligned_cols=107 Identities=17% Similarity=0.044 Sum_probs=55.4
Q ss_pred CCCccEEEEEecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCHHHHHHHHHHHhccc---chhhhhHHHHHHHHH
Q 003367 102 KMSLPIISILGTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDEIRVAKAILESFRDV---VSAVAAFDTLLRHIE 178 (826)
Q Consensus 102 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~---~~~~~~~~~~~~~l~ 178 (826)
....++..|.|.+|.||||+.++.++. .....++.. .+...++-+.+... ......+......+.
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~~-------~~~lVlTpT-----~~aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~ 225 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVNF-------EEDLILVPG-----RQAAEMIRRRANASGIIVATKDNVRTVDSFLM 225 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCCT-------TTCEEEESC-----HHHHHHHHHHHTTTSCCCCCTTTEEEHHHHHH
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhcc-------CCeEEEeCC-----HHHHHHHHHHhhhcCccccccceEEEeHHhhc
Confidence 347789999999999999999998862 122223211 22334444444311 111111111112222
Q ss_pred HHhcCC---ceeEEeccCCCCChhhHHHHHhhhcCCCCCcEEEEecccH
Q 003367 179 KSVKGK---KFLLVLDDVWSGNPTKWEELVSTLKFGSPESRILVTTRKE 224 (826)
Q Consensus 179 ~~l~~k---~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~ 224 (826)
+.-..+ -=++|+|++.-.+...+..+....+ ..++|+.--..
T Consensus 226 ~~~~~~~~~~d~liiDE~sm~~~~~l~~l~~~~~----~~~vilvGD~~ 270 (446)
T 3vkw_A 226 NYGKGARCQFKRLFIDEGLMLHTGCVNFLVEMSL----CDIAYVYGDTQ 270 (446)
T ss_dssp TTTSSCCCCCSEEEEETGGGSCHHHHHHHHHHTT----CSEEEEEECTT
T ss_pred CCCCCCCCcCCEEEEeCcccCCHHHHHHHHHhCC----CCEEEEecCcc
Confidence 211111 2489999995555555555554432 25677665443
No 495
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=90.58 E-value=0.18 Score=48.02 Aligned_cols=42 Identities=24% Similarity=0.153 Sum_probs=29.4
Q ss_pred cEEEEE-ecCCCcHHHHHHHHhcccccccCCCcEEEEEeCCCCCH
Q 003367 106 PIISIL-GTGGVGKTTLARLVFNEVKVDAHFDKRIWVCFSDPVDE 149 (826)
Q Consensus 106 ~vv~I~-G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 149 (826)
++|+|+ +-||+||||+|..++.... ..-..+..|+.....+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la--~~g~~vlliD~D~~~~~ 44 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALS--RSGYNIAVVDTDPQMSL 44 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCTTCHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHH--HCCCeEEEEECCCCCCH
Confidence 578887 6799999999999988443 23335677777654433
No 496
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.57 E-value=0.14 Score=50.36 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=22.0
Q ss_pred ccEEEEEecCCCcHHHHHHHHhccc
Q 003367 105 LPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 105 ~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
...|+|.|..|+||||+++.++...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999843
No 497
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.56 E-value=0.13 Score=46.63 Aligned_cols=22 Identities=32% Similarity=0.687 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHhcc
Q 003367 107 IISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 107 vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.|+++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 498
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=90.55 E-value=0.73 Score=48.68 Aligned_cols=46 Identities=28% Similarity=0.389 Sum_probs=33.1
Q ss_pred ccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhcc
Q 003367 79 KVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNE 128 (826)
Q Consensus 79 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 128 (826)
.++|....++++.+.+..-+. .... |.|.|..|+|||++|+.+...
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~---~~~~-vli~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISC---AECP-VLITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTT---CCSC-EEEECSTTSSHHHHHHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhcC---CCCC-eEEecCCCcCHHHHHHHHHHh
Confidence 466777777777666554332 1333 589999999999999999873
No 499
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.43 E-value=0.23 Score=46.54 Aligned_cols=117 Identities=15% Similarity=0.063 Sum_probs=74.8
Q ss_pred CCcceEEEEEecCCCCccccCCcccchhhhchhhhccCCCCcEEeccccccccccccccccccccCCCCccEEEccCCCC
Q 003367 424 ETKLRSLSIVHKSNSSTIFPGIRDSVADIALPSLFDRLTCLRTLCLRCHERHFCLSIARLPRNIKKLKHLRYLNLSNNDA 503 (826)
Q Consensus 424 ~~~lr~l~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~~~~lp~~i~~l~~L~~L~Ls~~~~ 503 (826)
...++.|++..+.... ..... .+-..+..-..|+.|+|++|.+... ....+-+.+..-..|++|+|++|.
T Consensus 40 n~~L~~L~L~~nn~ig-------d~ga~-~la~aL~~N~~L~~L~L~~n~igd~-ga~alA~aL~~N~tL~~L~L~~N~- 109 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVS-------KERIR-SLIEAACNSKHIEKFSLANTAISDS-EARGLIELIETSPSLRVLNVESNF- 109 (197)
T ss_dssp CSSCCEEECTTCCSSC-------HHHHH-HHHHHHTTCSCCCEEECTTSCCBHH-HHTTHHHHHHHCSSCCEEECCSSB-
T ss_pred CCCccEEECCCCCCCC-------HHHHH-HHHHHHhhCCCcCEEEccCCCCChH-HHHHHHHHHhcCCccCeEecCCCc-
Confidence 4567788876531111 00111 1234567778999999997766533 344455667777899999999998
Q ss_pred ccc-----cchhhcCCCCCcEEeccCCCC--Cc-----ccchhhhcccCCCeeeecCcc
Q 003367 504 IYE-----LPEALCDLCNLQTLDVSNCGN--LH-----ALPQGIAKLINLRHLINEGTP 550 (826)
Q Consensus 504 ~~~-----lp~~i~~L~~L~~L~L~~~~~--~~-----~lp~~i~~L~~L~~L~l~~~~ 550 (826)
++. +-+.+..-+.|+.|+|++|.. ++ .+-..+..-+.|+.|+++.+.
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 442 334566677899999987642 22 133445556788888887554
No 500
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.38 E-value=0.17 Score=55.25 Aligned_cols=48 Identities=10% Similarity=-0.068 Sum_probs=33.8
Q ss_pred CccccchHHHHHHHHHHcCCCCCCCCCccEEEEEecCCCcHHHHHHHHhccc
Q 003367 78 SKVRGRDEEKKTIIDLLLGSSSQEKMSLPIISILGTGGVGKTTLARLVFNEV 129 (826)
Q Consensus 78 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 129 (826)
+..+.|.+..+.+.+...... +...+|.+.|+.|.||||+|++++...
T Consensus 372 P~~f~rpeV~~vLr~~~~~~~----~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 372 PEWFSYPEVVKILRESNPPRP----KQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp CTTTSCHHHHHHHHHHSCCGG----GCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred CccccChhhHHHHHHhccccc----ccceEEEecccCCCCHHHHHHHHHHHH
Confidence 445666666666666442211 234689999999999999999999854
Done!