Query 003368
Match_columns 825
No_of_seqs 735 out of 4953
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 22:54:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003368.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003368hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.3E-75 1.5E-79 701.4 45.0 551 5-576 26-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.7E-63 9.2E-68 598.6 35.9 488 32-538 151-743 (768)
3 3t6q_A CD180 antigen; protein- 100.0 4.3E-57 1.5E-61 532.0 40.9 491 32-540 33-564 (606)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.3E-56 4.4E-61 535.2 43.9 539 19-561 10-623 (680)
5 3vq2_A TLR4, TOLL-like recepto 100.0 5E-56 1.7E-60 522.9 37.7 497 18-540 16-562 (606)
6 3t6q_A CD180 antigen; protein- 100.0 6.7E-55 2.3E-59 513.3 39.4 498 37-557 17-558 (606)
7 4eco_A Uncharacterized protein 100.0 4.9E-57 1.7E-61 531.8 18.7 459 6-536 53-600 (636)
8 3j0a_A TOLL-like receptor 5; m 100.0 2.2E-54 7.4E-59 526.3 35.1 490 20-540 14-564 (844)
9 1ziw_A TOLL-like receptor 3; i 100.0 7.7E-53 2.6E-57 502.5 47.8 502 32-541 49-627 (680)
10 3vq2_A TLR4, TOLL-like recepto 100.0 7.6E-54 2.6E-58 504.3 37.3 492 36-557 15-556 (606)
11 4ecn_A Leucine-rich repeat pro 100.0 5.7E-54 2E-58 513.5 29.1 470 12-535 285-863 (876)
12 3j0a_A TOLL-like receptor 5; m 100.0 5.5E-52 1.9E-56 505.1 35.9 492 36-561 8-561 (844)
13 2z63_A TOLL-like receptor 4, v 100.0 2.7E-51 9.3E-56 479.0 34.1 501 18-542 12-537 (570)
14 2z81_A CD282 antigen, TOLL-lik 100.0 1.8E-51 6.3E-56 478.1 29.2 492 19-541 3-515 (549)
15 4eco_A Uncharacterized protein 100.0 7.6E-51 2.6E-55 479.0 16.5 450 56-557 81-598 (636)
16 2z63_A TOLL-like receptor 4, v 100.0 2.6E-48 9.1E-53 453.7 33.2 473 37-557 12-529 (570)
17 2z7x_B TOLL-like receptor 1, v 100.0 7.1E-49 2.4E-53 453.1 26.0 455 35-540 3-485 (520)
18 4g8a_A TOLL-like receptor 4; l 100.0 1.7E-47 5.8E-52 452.7 37.5 496 32-537 52-581 (635)
19 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-47 3.8E-52 446.3 33.1 478 59-557 8-508 (549)
20 4ecn_A Leucine-rich repeat pro 100.0 5E-48 1.7E-52 462.2 28.5 437 56-540 323-844 (876)
21 2z7x_B TOLL-like receptor 1, v 100.0 8.5E-48 2.9E-52 444.1 19.6 431 32-517 21-485 (520)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.4E-45 4.8E-50 429.3 27.2 457 34-541 33-515 (562)
23 4g8a_A TOLL-like receptor 4; l 100.0 6.2E-44 2.1E-48 422.1 39.3 536 5-557 8-578 (635)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2E-44 6.8E-49 419.6 24.2 433 32-517 52-514 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 7.7E-43 2.6E-47 395.6 29.7 367 56-517 30-412 (455)
26 1jl5_A Outer protein YOPM; leu 100.0 2.2E-42 7.5E-47 389.4 26.1 406 32-540 11-433 (454)
27 3v47_A TOLL-like receptor 5B a 100.0 4.2E-42 1.4E-46 389.6 27.0 366 32-445 30-412 (455)
28 1jl5_A Outer protein YOPM; leu 100.0 3.3E-42 1.1E-46 388.0 25.1 389 31-522 33-438 (454)
29 3bz5_A Internalin-J, INLJ; leu 100.0 1.2E-39 4.1E-44 367.4 29.1 362 45-542 31-393 (457)
30 3bz5_A Internalin-J, INLJ; leu 100.0 4.1E-38 1.4E-42 354.9 32.4 348 31-474 41-396 (457)
31 1o6v_A Internalin A; bacterial 100.0 2.3E-38 7.9E-43 359.5 29.4 344 55-465 45-388 (466)
32 1ogq_A PGIP-2, polygalacturona 100.0 7.9E-40 2.7E-44 351.0 16.3 278 5-369 20-306 (313)
33 2id5_A Lingo-1, leucine rich r 100.0 1E-37 3.5E-42 355.7 30.9 321 36-419 15-336 (477)
34 1o6v_A Internalin A; bacterial 100.0 2.1E-37 7E-42 351.7 31.1 346 78-514 44-389 (466)
35 3o6n_A APL1; leucine-rich repe 100.0 3.7E-37 1.3E-41 341.5 26.7 351 10-418 3-354 (390)
36 3oja_B Anopheles plasmodium-re 100.0 5.1E-37 1.8E-41 359.1 27.3 359 4-420 3-362 (597)
37 2id5_A Lingo-1, leucine rich r 100.0 6.1E-37 2.1E-41 349.3 26.3 304 32-394 32-335 (477)
38 3o6n_A APL1; leucine-rich repe 100.0 3E-35 1E-39 326.1 23.8 310 32-394 45-354 (390)
39 3oja_B Anopheles plasmodium-re 100.0 1E-34 3.5E-39 339.6 25.8 310 32-394 51-360 (597)
40 4fmz_A Internalin; leucine ric 100.0 9.9E-34 3.4E-38 308.7 27.7 306 53-416 41-346 (347)
41 4fmz_A Internalin; leucine ric 100.0 1.5E-33 5.2E-38 307.2 26.4 304 31-392 43-346 (347)
42 1ogq_A PGIP-2, polygalacturona 100.0 8.3E-34 2.8E-38 304.1 19.2 257 298-564 50-308 (313)
43 2ft3_A Biglycan; proteoglycan, 100.0 4.9E-33 1.7E-37 301.2 24.2 286 34-389 35-330 (332)
44 1xku_A Decorin; proteoglycan, 100.0 9.7E-33 3.3E-37 298.6 25.5 287 34-389 33-329 (330)
45 4fih_A Serine/threonine-protei 100.0 3.6E-34 1.2E-38 305.6 13.7 161 643-824 74-234 (346)
46 4aoj_A High affinity nerve gro 100.0 1.6E-33 5.3E-38 301.3 16.1 174 643-824 41-224 (329)
47 4aw0_A HPDK1, 3-phosphoinositi 100.0 1.3E-33 4.6E-38 296.7 15.0 164 642-825 31-199 (311)
48 4asz_A BDNF/NT-3 growth factor 100.0 8.3E-34 2.8E-38 299.2 13.1 164 643-814 13-182 (299)
49 2ft3_A Biglycan; proteoglycan, 100.0 1.7E-32 5.7E-37 297.0 23.7 289 56-414 33-331 (332)
50 1xku_A Decorin; proteoglycan, 100.0 6.6E-32 2.2E-36 292.1 27.7 120 56-181 31-150 (330)
51 4b9d_A Serine/threonine-protei 100.0 6.8E-34 2.3E-38 304.0 11.9 166 642-825 23-190 (350)
52 4fie_A Serine/threonine-protei 100.0 2.1E-33 7.3E-38 307.1 15.6 162 643-825 151-312 (423)
53 4fcg_A Uncharacterized protein 100.0 2.1E-33 7.2E-38 302.8 13.6 254 3-281 40-314 (328)
54 4gt4_A Tyrosine-protein kinase 100.0 4.2E-33 1.4E-37 295.1 15.5 173 644-824 27-211 (308)
55 3omv_A RAF proto-oncogene seri 100.0 6.1E-33 2.1E-37 292.5 15.0 161 641-824 34-198 (307)
56 3fpq_A Serine/threonine-protei 100.0 1.8E-32 6.3E-37 286.7 16.5 164 646-825 29-195 (290)
57 3hmm_A TGF-beta receptor type- 100.0 2.4E-32 8.3E-37 290.0 15.1 164 644-824 4-176 (303)
58 4g31_A Eukaryotic translation 100.0 5.4E-32 1.9E-36 285.9 16.2 159 643-813 5-171 (299)
59 3hyh_A Carbon catabolite-derep 100.0 4.1E-32 1.4E-36 281.5 15.0 161 643-825 13-176 (275)
60 3ubd_A Ribosomal protein S6 ki 100.0 7.7E-33 2.6E-37 291.0 9.5 162 643-824 24-190 (304)
61 4g3f_A NF-kappa-beta-inducing 100.0 4.1E-32 1.4E-36 289.0 13.8 158 642-824 57-220 (336)
62 2z80_A TOLL-like receptor 2, v 100.0 1.1E-31 3.9E-36 293.1 17.0 293 12-395 22-317 (353)
63 1z7x_W Ribonuclease inhibitor; 100.0 3.9E-35 1.3E-39 332.9 -11.4 359 32-416 3-411 (461)
64 1z7x_W Ribonuclease inhibitor; 100.0 1.2E-34 4.2E-39 328.8 -9.6 385 104-536 3-440 (461)
65 4ase_A Vascular endothelial gr 100.0 1.9E-31 6.4E-36 287.5 14.0 184 634-824 55-251 (353)
66 3g06_A SSPH2 (leucine-rich rep 100.0 4.4E-30 1.5E-34 297.7 21.5 297 4-427 6-308 (622)
67 2z80_A TOLL-like receptor 2, v 100.0 3.4E-30 1.2E-34 281.3 16.2 279 56-420 31-318 (353)
68 2z66_A Variable lymphocyte rec 100.0 4E-30 1.4E-34 275.0 15.5 204 19-258 6-213 (306)
69 4b99_A Mitogen-activated prote 100.0 6.8E-30 2.3E-34 280.3 17.3 166 643-824 54-226 (398)
70 3ogk_B Coronatine-insensitive 100.0 4.5E-32 1.5E-36 317.9 -4.8 433 19-515 41-528 (592)
71 3zyi_A Leucine-rich repeat-con 100.0 2.1E-28 7.1E-33 276.4 25.1 247 58-416 56-303 (452)
72 3v5w_A G-protein coupled recep 100.0 2.5E-29 8.4E-34 287.1 16.8 162 642-825 188-355 (689)
73 3zyj_A Leucine-rich repeat-con 100.0 2.8E-28 9.5E-33 274.4 25.2 89 328-416 204-292 (440)
74 1wwl_A Monocyte differentiatio 100.0 6.8E-31 2.3E-35 281.5 3.4 224 10-257 21-266 (312)
75 3zyi_A Leucine-rich repeat-con 100.0 1.2E-28 4E-33 278.5 21.9 247 35-312 57-304 (452)
76 1ozn_A Reticulon 4 receptor; N 100.0 4E-29 1.4E-33 264.2 16.9 231 24-279 5-236 (285)
77 2z66_A Variable lymphocyte rec 100.0 1E-28 3.4E-33 264.0 17.5 277 198-541 10-292 (306)
78 3o53_A Protein LRIM1, AGAP0063 100.0 5.1E-30 1.7E-34 275.3 6.6 270 32-397 10-281 (317)
79 3zyj_A Leucine-rich repeat-con 100.0 4.6E-28 1.6E-32 272.6 22.1 247 35-312 46-293 (440)
80 4fcg_A Uncharacterized protein 100.0 2.3E-28 8E-33 263.4 18.5 225 297-536 80-314 (328)
81 3o53_A Protein LRIM1, AGAP0063 100.0 4.8E-30 1.6E-34 275.6 5.0 266 85-422 15-282 (317)
82 3ogk_B Coronatine-insensitive 100.0 4.2E-31 1.4E-35 309.6 -5.0 422 32-510 73-548 (592)
83 1wwl_A Monocyte differentiatio 100.0 1E-30 3.5E-35 280.1 -2.1 254 52-393 39-310 (312)
84 2o6q_A Variable lymphocyte rec 100.0 1.6E-27 5.6E-32 249.6 22.1 218 17-258 2-219 (270)
85 4f9c_A Cell division cycle 7-r 100.0 2.1E-28 7E-33 265.7 15.4 147 641-812 19-170 (361)
86 3uto_A Twitchin; kinase, muscl 100.0 1.9E-28 6.6E-33 282.2 15.1 163 642-824 156-320 (573)
87 1ozn_A Reticulon 4 receptor; N 100.0 1.3E-27 4.4E-32 252.6 20.1 223 18-260 16-241 (285)
88 4aw2_A Serine/threonine-protei 99.9 1.6E-27 5.5E-32 265.7 14.4 172 634-824 65-240 (437)
89 3oja_A Leucine-rich immune mol 99.9 5.8E-28 2E-32 274.5 10.4 254 38-387 16-270 (487)
90 3g06_A SSPH2 (leucine-rich rep 99.9 7.3E-26 2.5E-30 262.3 26.1 267 196-523 41-307 (622)
91 2c30_A Serine/threonine-protei 99.9 1.3E-26 4.3E-31 249.3 18.2 173 631-824 23-205 (321)
92 3oja_A Leucine-rich immune mol 99.9 6.9E-28 2.4E-32 273.8 8.7 234 81-411 35-270 (487)
93 1o6l_A RAC-beta serine/threoni 99.9 1.1E-26 3.7E-31 250.9 16.3 163 642-824 4-169 (337)
94 2z62_A TOLL-like receptor 4, v 99.9 2.9E-26 1E-30 241.0 18.0 204 57-281 29-237 (276)
95 3fxz_A Serine/threonine-protei 99.9 1.7E-26 5.7E-31 245.6 16.2 162 642-824 19-180 (297)
96 3txo_A PKC-L, NPKC-ETA, protei 99.9 1.2E-26 4E-31 252.3 15.0 163 642-824 22-188 (353)
97 2vd5_A DMPK protein; serine/th 99.9 9E-27 3.1E-31 257.9 13.6 173 633-824 51-227 (412)
98 4dc2_A Protein kinase C IOTA t 99.9 1.7E-26 5.7E-31 254.1 15.5 164 641-824 50-217 (396)
99 1xjd_A Protein kinase C, theta 99.9 2.1E-26 7.2E-31 249.4 15.7 165 640-824 14-182 (345)
100 3v8s_A RHO-associated protein 99.9 7.4E-27 2.5E-31 258.4 12.2 169 635-824 61-233 (410)
101 3s95_A LIMK-1, LIM domain kina 99.9 3.7E-26 1.3E-30 244.6 17.1 153 642-813 9-161 (310)
102 3a8x_A Protein kinase C IOTA t 99.9 3.8E-26 1.3E-30 247.8 16.7 163 642-824 8-174 (345)
103 3fe3_A MAP/microtubule affinit 99.9 4.6E-26 1.6E-30 245.3 16.5 163 641-824 13-177 (328)
104 3uim_A Brassinosteroid insensi 99.9 2.7E-26 9.3E-31 247.5 14.6 172 629-814 16-188 (326)
105 2i0e_A Protein kinase C-beta I 99.9 4.2E-26 1.4E-30 247.8 15.2 163 642-824 19-185 (353)
106 2qkw_B Protein kinase; three-h 99.9 6.2E-26 2.1E-30 244.1 16.1 163 633-812 29-191 (321)
107 1fot_A TPK1 delta, CAMP-depend 99.9 8.2E-26 2.8E-30 242.2 16.2 160 642-824 5-167 (318)
108 3zgw_A Maternal embryonic leuc 99.9 6.5E-26 2.2E-30 245.6 14.9 164 641-824 8-173 (347)
109 3qd2_B Eukaryotic translation 99.9 1.5E-25 5.2E-30 242.1 17.7 160 642-813 5-217 (332)
110 2z62_A TOLL-like receptor 4, v 99.9 3.4E-25 1.1E-29 232.9 19.5 224 20-260 14-240 (276)
111 2r5t_A Serine/threonine-protei 99.9 7.5E-26 2.6E-30 247.6 15.0 164 642-825 37-204 (373)
112 2zv2_A Calcium/calmodulin-depe 99.9 1.3E-25 4.5E-30 238.8 16.2 164 642-824 12-201 (298)
113 4fr4_A YANK1, serine/threonine 99.9 8.2E-26 2.8E-30 247.8 14.8 162 642-824 14-178 (384)
114 3p86_A Serine/threonine-protei 99.9 9.6E-26 3.3E-30 241.0 14.4 168 640-824 34-203 (309)
115 2yab_A Death-associated protei 99.9 1.9E-25 6.6E-30 243.4 16.9 162 642-824 11-182 (361)
116 1rdq_E PKA C-alpha, CAMP-depen 99.9 1.6E-25 5.4E-30 243.2 15.8 160 642-824 40-202 (350)
117 3c4z_A Rhodopsin kinase; Ser/T 99.9 2E-25 6.8E-30 254.3 16.4 167 642-824 184-353 (543)
118 2o6q_A Variable lymphocyte rec 99.9 2.1E-24 7.3E-29 225.9 23.0 205 56-283 16-220 (270)
119 3c0i_A Peripheral plasma membr 99.9 1.3E-25 4.5E-30 244.5 14.1 166 643-824 24-197 (351)
120 4eqm_A Protein kinase; transfe 99.9 2.7E-25 9.3E-30 235.8 15.9 162 643-824 11-176 (294)
121 4ejn_A RAC-alpha serine/threon 99.9 9.7E-26 3.3E-30 254.0 12.4 164 642-824 147-313 (446)
122 3a62_A Ribosomal protein S6 ki 99.9 2.3E-25 7.8E-30 240.2 14.7 163 642-824 16-185 (327)
123 3tki_A Serine/threonine-protei 99.9 2.8E-25 9.6E-30 239.0 14.9 151 642-812 6-157 (323)
124 2pmi_A Negative RE, cyclin-dep 99.9 3.3E-25 1.1E-29 238.0 15.3 168 642-824 4-172 (317)
125 3soa_A Calcium/calmodulin-depe 99.9 4.8E-25 1.6E-29 246.7 16.9 163 642-824 10-177 (444)
126 2nru_A Interleukin-1 receptor- 99.9 8.4E-25 2.9E-29 233.7 18.1 166 629-813 11-186 (307)
127 3o0g_A Cell division protein k 99.9 4E-25 1.4E-29 234.4 15.5 161 643-823 2-164 (292)
128 2y0a_A Death-associated protei 99.9 6.3E-25 2.2E-29 236.6 17.2 161 643-824 11-181 (326)
129 1tki_A Titin; serine kinase, m 99.9 4.2E-25 1.4E-29 237.3 15.7 162 642-824 4-167 (321)
130 3kul_A Ephrin type-A receptor 99.9 4E-25 1.4E-29 238.1 15.5 152 643-813 49-204 (325)
131 2acx_A G protein-coupled recep 99.9 3E-25 1E-29 253.3 15.2 164 642-824 183-349 (576)
132 2qol_A Ephrin receptor; recept 99.9 2.4E-25 8.4E-30 244.2 13.9 152 643-813 45-200 (373)
133 3ugc_A Tyrosine-protein kinase 99.9 2.3E-25 7.8E-30 236.6 13.2 154 643-813 10-167 (295)
134 2x4f_A Myosin light chain kina 99.9 5E-25 1.7E-29 241.6 16.3 160 645-824 91-252 (373)
135 3rp9_A Mitogen-activated prote 99.9 3.3E-25 1.1E-29 250.7 15.0 155 642-812 52-208 (458)
136 3h4j_B AMPK kdaid, SNF1-like p 99.9 4.2E-25 1.4E-29 238.2 15.0 161 642-824 8-171 (336)
137 1kob_A Twitchin; kinase, intra 99.9 7.8E-25 2.7E-29 240.8 17.0 163 642-824 50-214 (387)
138 2psq_A Fibroblast growth facto 99.9 7.7E-25 2.6E-29 240.1 16.6 164 642-813 80-256 (370)
139 3pfq_A PKC-B, PKC-beta, protei 99.9 6.8E-25 2.3E-29 258.2 17.3 165 641-825 339-507 (674)
140 2bdw_A Hypothetical protein K1 99.9 8.1E-25 2.8E-29 239.1 16.6 162 642-824 28-194 (362)
141 4euu_A Serine/threonine-protei 99.9 9E-25 3.1E-29 234.8 16.6 165 643-823 9-178 (319)
142 3soc_A Activin receptor type-2 99.9 5.7E-25 1.9E-29 236.6 15.0 155 642-813 23-184 (322)
143 2y94_A 5'-AMP-activated protei 99.9 7.4E-25 2.5E-29 246.8 16.5 162 642-824 15-179 (476)
144 3cbl_A C-FES, proto-oncogene t 99.9 3.9E-25 1.3E-29 243.3 13.9 153 641-812 112-265 (377)
145 2p1m_B Transport inhibitor res 99.9 5.1E-28 1.7E-32 283.5 -10.1 380 102-535 103-518 (594)
146 3niz_A Rhodanese family protei 99.9 8.7E-25 3E-29 233.9 15.9 162 642-824 20-183 (311)
147 3m19_A Variable lymphocyte rec 99.9 2.7E-24 9.1E-29 222.6 18.8 158 18-181 3-160 (251)
148 3q4u_A Activin receptor type-1 99.9 9.8E-25 3.3E-29 232.4 15.7 154 642-814 7-167 (301)
149 3n9x_A Phosphotransferase; mal 99.9 1E-24 3.4E-29 244.4 16.2 156 642-813 25-182 (432)
150 3vhe_A Vascular endothelial gr 99.9 6.3E-25 2.2E-29 240.2 14.1 174 633-813 12-246 (359)
151 2xwt_C Thyrotropin receptor; s 99.9 7.9E-25 2.7E-29 224.8 13.9 203 46-277 24-235 (239)
152 3f3z_A Calcium/calmodulin-depe 99.9 2E-24 6.7E-29 227.1 16.7 161 643-824 9-172 (277)
153 2vuw_A Serine/threonine-protei 99.9 1.6E-25 5.6E-30 242.5 8.4 153 642-812 19-234 (336)
154 1p9a_G Platelet glycoprotein I 99.9 5.2E-24 1.8E-28 225.0 19.5 197 33-256 11-207 (290)
155 3p1a_A MYT1 kinase, membrane-a 99.9 4.6E-25 1.6E-29 236.1 11.6 151 643-813 57-210 (311)
156 2rku_A Serine/threonine-protei 99.9 2.6E-24 9E-29 228.3 17.2 163 642-824 14-179 (294)
157 3uc3_A Serine/threonine-protei 99.9 1.1E-24 3.9E-29 237.9 14.7 161 642-824 19-181 (361)
158 3ork_A Serine/threonine protei 99.9 8.2E-25 2.8E-29 234.2 13.1 156 642-813 11-169 (311)
159 3e7e_A HBUB1, BUB1A, mitotic c 99.9 5.8E-25 2E-29 241.0 11.9 166 641-824 63-249 (365)
160 3cok_A Serine/threonine-protei 99.9 1.5E-24 5.1E-29 228.2 14.6 164 641-823 9-175 (278)
161 2owb_A Serine/threonine-protei 99.9 2.6E-24 9E-29 232.8 16.9 163 642-824 40-205 (335)
162 3kn6_A Ribosomal protein S6 ki 99.9 1.7E-24 5.8E-29 233.1 15.2 154 648-824 16-173 (325)
163 1ob3_A PFPK5, cell division co 99.9 1.2E-24 4E-29 230.3 13.4 160 643-823 2-163 (288)
164 3rfs_A Internalin B, repeat mo 99.9 4.2E-24 1.4E-28 223.8 17.5 206 32-268 41-246 (272)
165 4agu_A Cyclin-dependent kinase 99.9 1.6E-24 5.6E-29 231.8 14.5 161 643-823 3-165 (311)
166 3rfs_A Internalin B, repeat mo 99.9 3.7E-24 1.3E-28 224.3 16.8 200 52-312 37-236 (272)
167 2qr7_A Ribosomal protein S6 ki 99.9 2.5E-24 8.4E-29 233.2 15.7 159 642-824 21-184 (342)
168 4eut_A Serine/threonine-protei 99.9 2.2E-24 7.6E-29 238.9 15.5 166 643-824 9-179 (396)
169 2w4o_A Calcium/calmodulin-depe 99.9 1.5E-24 5.3E-29 235.8 13.8 150 641-812 51-203 (349)
170 1p9a_G Platelet glycoprotein I 99.9 1.1E-23 3.8E-28 222.5 19.8 206 51-283 5-210 (290)
171 2izr_A Casein kinase I isoform 99.9 1.4E-24 4.7E-29 234.5 13.0 149 643-813 9-163 (330)
172 4hcu_A Tyrosine-protein kinase 99.9 3.2E-24 1.1E-28 224.4 15.3 150 642-812 9-158 (269)
173 4fvq_A Tyrosine-protein kinase 99.9 2.8E-24 9.5E-29 227.5 14.8 151 642-811 7-172 (289)
174 1opk_A P150, C-ABL, proto-onco 99.9 1.6E-24 5.4E-29 246.8 13.7 153 641-812 218-370 (495)
175 3l9p_A Anaplastic lymphoma kin 99.9 9.9E-25 3.4E-29 239.0 11.5 158 642-812 70-236 (367)
176 3i6u_A CDS1, serine/threonine- 99.9 2.3E-24 7.9E-29 240.3 14.6 161 642-824 134-305 (419)
177 2p1m_B Transport inhibitor res 99.9 1.7E-27 5.9E-32 279.0 -11.2 429 19-514 34-520 (594)
178 3lxl_A Tyrosine-protein kinase 99.9 4.3E-24 1.5E-28 230.3 16.2 154 643-813 23-180 (327)
179 3ttj_A Mitogen-activated prote 99.9 3.1E-24 1E-28 242.1 15.5 164 642-824 61-227 (464)
180 3dls_A PAS domain-containing s 99.9 1.4E-24 4.6E-29 234.8 12.1 162 642-824 23-193 (335)
181 3sxs_A Cytoplasmic tyrosine-pr 99.9 5.6E-24 1.9E-28 222.5 16.4 151 642-813 7-157 (268)
182 1qcf_A Haematopoetic cell kina 99.9 3.5E-24 1.2E-28 241.6 15.7 153 639-812 184-336 (454)
183 3is5_A Calcium-dependent prote 99.9 2.8E-24 9.6E-29 227.0 14.0 155 643-813 22-180 (285)
184 3fdn_A Serine/threonine-protei 99.9 3.9E-24 1.3E-28 225.1 15.0 152 641-812 7-161 (279)
185 2clq_A Mitogen-activated prote 99.9 4E-24 1.4E-28 226.9 15.1 164 643-823 22-186 (295)
186 1luf_A Muscle-specific tyrosin 99.9 2.4E-24 8.1E-29 234.0 13.5 166 639-812 43-226 (343)
187 3gni_B Strad alpha; kinase fol 99.9 3.9E-24 1.3E-28 236.6 15.4 153 641-811 23-179 (389)
188 3g2f_A Bone morphogenetic prot 99.9 4.8E-24 1.6E-28 230.9 15.5 153 642-812 12-172 (336)
189 2a2a_A Death-associated protei 99.9 5.2E-24 1.8E-28 229.0 15.7 151 643-813 12-172 (321)
190 4e5w_A Tyrosine-protein kinase 99.9 5.3E-24 1.8E-28 226.8 15.5 154 643-813 21-179 (302)
191 3poz_A Epidermal growth factor 99.9 2.1E-24 7.3E-29 232.6 12.4 151 643-813 15-170 (327)
192 1k9a_A Carboxyl-terminal SRC k 99.9 4.8E-24 1.6E-28 240.1 15.7 150 641-811 191-340 (450)
193 1ua2_A CAK, cell division prot 99.9 2.5E-24 8.5E-29 234.1 12.9 164 641-824 8-176 (346)
194 3g33_A Cell division protein k 99.9 6E-24 2.1E-28 227.1 15.6 169 641-824 7-183 (308)
195 3gen_A Tyrosine-protein kinase 99.9 7E-24 2.4E-28 223.7 15.9 151 641-812 22-172 (283)
196 3a7i_A MST3 kinase, serine/thr 99.9 7.7E-24 2.6E-28 225.7 16.2 160 643-823 22-182 (303)
197 1u5q_A Serine/threonine protei 99.9 5E-24 1.7E-28 231.4 14.8 150 643-812 54-206 (348)
198 2eva_A TAK1 kinase - TAB1 chim 99.9 6.5E-24 2.2E-28 226.7 15.4 150 643-812 8-158 (307)
199 2eue_A Carbon catabolite derep 99.9 4.7E-24 1.6E-28 224.0 14.1 151 642-813 12-165 (275)
200 3gbz_A Kinase, CMGC CDK; ssgci 99.9 2.7E-24 9.4E-29 232.0 12.5 163 640-823 31-200 (329)
201 3hko_A Calcium/calmodulin-depe 99.9 3.9E-24 1.3E-28 232.5 13.8 165 640-812 23-222 (345)
202 4f0f_A Serine/threonine-protei 99.9 6.8E-24 2.3E-28 224.3 15.2 152 642-812 18-181 (287)
203 2w5a_A Serine/threonine-protei 99.9 1.8E-24 6.1E-29 227.7 10.6 161 642-813 5-169 (279)
204 3mtl_A Cell division protein k 99.9 1.7E-24 5.9E-29 233.1 10.5 161 643-823 2-163 (324)
205 2y7j_A Phosphorylase B kinase 99.9 1E-23 3.5E-28 230.8 16.7 164 640-824 91-263 (365)
206 3kex_A Receptor tyrosine-prote 99.9 3.1E-24 1.1E-28 231.2 12.3 151 643-813 13-168 (325)
207 2ivs_A Proto-oncogene tyrosine 99.9 8.8E-24 3E-28 226.4 15.7 165 641-813 21-203 (314)
208 3oz6_A Mitogen-activated prote 99.9 4.7E-24 1.6E-28 235.8 13.9 150 642-811 8-160 (388)
209 2yex_A Serine/threonine-protei 99.9 1.2E-23 4.1E-28 220.9 16.3 150 643-812 7-157 (276)
210 3llt_A Serine/threonine kinase 99.9 5.4E-24 1.9E-28 232.9 14.1 163 630-812 22-214 (360)
211 1t4h_A Serine/threonine-protei 99.9 1.6E-23 5.5E-28 221.7 17.3 155 644-812 27-184 (290)
212 2ac3_A MAP kinase-interacting 99.9 7.9E-24 2.7E-28 227.1 15.1 149 643-811 12-165 (316)
213 1nxk_A MAP kinase-activated pr 99.9 5.9E-24 2E-28 235.4 14.4 162 643-824 61-227 (400)
214 3qyz_A Mitogen-activated prote 99.9 5.4E-24 1.9E-28 233.1 14.0 157 640-813 24-181 (364)
215 1zy4_A Serine/threonine-protei 99.9 8.9E-24 3E-28 225.0 15.2 156 642-812 5-168 (303)
216 2j7t_A Serine/threonine-protei 99.9 2.2E-24 7.6E-29 229.8 10.5 150 642-810 18-167 (302)
217 3lb7_A RAF proto-oncogene seri 99.9 1.1E-23 3.7E-28 224.9 15.7 148 642-812 35-184 (307)
218 3q5i_A Protein kinase; CDPK, m 99.9 1.4E-23 4.8E-28 240.1 17.6 162 642-824 35-212 (504)
219 3qup_A Tyrosine-protein kinase 99.9 2.3E-24 7.9E-29 232.0 10.5 165 640-813 20-190 (323)
220 3lij_A Calcium/calmodulin depe 99.9 9.8E-24 3.4E-28 240.7 16.3 161 643-824 37-202 (494)
221 1cm8_A Phosphorylated MAP kina 99.9 6.1E-24 2.1E-28 232.7 13.9 154 642-812 24-180 (367)
222 2buj_A Serine/threonine-protei 99.9 6.1E-24 2.1E-28 228.0 13.6 157 642-810 28-184 (317)
223 2wqm_A Serine/threonine-protei 99.9 8.7E-24 3E-28 226.1 14.6 166 642-823 31-199 (310)
224 1x8b_A WEE1HU, WEE1-like prote 99.9 9.6E-24 3.3E-28 223.0 14.8 156 642-813 10-187 (289)
225 4aaa_A Cyclin-dependent kinase 99.9 6.1E-24 2.1E-28 229.6 13.5 162 642-823 24-187 (331)
226 3goz_A Leucine-rich repeat-con 99.9 1.4E-25 4.8E-30 245.4 0.6 258 36-312 2-298 (362)
227 1vzo_A Ribosomal protein S6 ki 99.9 2.8E-24 9.7E-29 234.3 10.8 163 642-824 53-224 (355)
228 3kfa_A Tyrosine-protein kinase 99.9 3.5E-24 1.2E-28 226.6 11.2 155 640-813 10-164 (288)
229 3tt0_A Basic fibroblast growth 99.9 1.5E-23 5.1E-28 231.1 16.8 164 642-813 68-244 (382)
230 1phk_A Phosphorylase kinase; g 99.9 1.9E-23 6.5E-28 222.1 17.0 153 641-813 15-177 (298)
231 3bhy_A Death-associated protei 99.9 1.6E-23 5.3E-28 220.9 16.0 151 643-813 5-165 (283)
232 2x7f_A TRAF2 and NCK-interacti 99.9 4.9E-24 1.7E-28 229.7 12.4 178 632-823 13-192 (326)
233 3brb_A Proto-oncogene tyrosine 99.9 5.1E-24 1.7E-28 228.3 12.3 165 640-813 31-200 (313)
234 2vgo_A Serine/threonine-protei 99.9 1.5E-23 5E-28 221.3 15.7 151 642-812 13-166 (284)
235 3kk8_A Calcium/calmodulin depe 99.9 1.9E-23 6.3E-28 220.5 16.3 152 642-813 5-161 (284)
236 3eqc_A Dual specificity mitoge 99.9 6.7E-24 2.3E-28 232.1 13.4 152 642-812 32-184 (360)
237 3eb0_A Putative uncharacterize 99.9 7.9E-24 2.7E-28 233.5 14.0 158 640-813 4-195 (383)
238 2xwt_C Thyrotropin receptor; s 99.9 1.4E-23 4.9E-28 215.4 14.9 198 32-255 31-237 (239)
239 3goz_A Leucine-rich repeat-con 99.9 1.5E-25 5E-30 245.3 -0.1 263 60-373 2-302 (362)
240 3dtc_A Mitogen-activated prote 99.9 1.2E-23 4.3E-28 220.2 14.7 152 642-813 6-169 (271)
241 1fmk_A C-SRC, P60-SRC, tyrosin 99.9 5.1E-24 1.8E-28 240.0 12.5 152 640-812 181-332 (452)
242 2w1i_A JAK2; chromosomal rearr 99.9 1.3E-23 4.6E-28 226.3 15.3 154 643-813 41-198 (326)
243 3op5_A Serine/threonine-protei 99.9 7E-24 2.4E-28 232.2 13.1 156 642-813 34-207 (364)
244 2a19_B Interferon-induced, dou 99.9 8.4E-24 2.9E-28 223.0 13.2 154 643-813 11-175 (284)
245 2jam_A Calcium/calmodulin-depe 99.9 1.2E-23 3.9E-28 224.5 14.4 150 643-812 9-161 (304)
246 2h6d_A 5'-AMP-activated protei 99.9 1.7E-23 5.7E-28 219.8 15.2 151 642-812 10-163 (276)
247 1rjb_A FL cytokine receptor; k 99.9 1.6E-23 5.4E-28 227.7 15.5 166 641-814 43-226 (344)
248 3mwu_A Calmodulin-domain prote 99.9 1.1E-23 3.6E-28 240.1 14.7 161 643-824 22-187 (486)
249 3c1x_A Hepatocyte growth facto 99.9 7.4E-24 2.5E-28 232.2 12.9 151 644-812 90-244 (373)
250 1mp8_A Focal adhesion kinase 1 99.9 9.9E-24 3.4E-28 222.3 13.3 152 642-813 14-169 (281)
251 3nyv_A Calmodulin-domain prote 99.9 8.1E-24 2.8E-28 241.0 13.5 161 643-824 26-192 (484)
252 2h34_A Serine/threonine-protei 99.9 1.6E-23 5.4E-28 224.0 14.9 152 642-813 33-187 (309)
253 3com_A Serine/threonine-protei 99.9 1.6E-23 5.6E-28 224.4 15.0 162 641-823 27-188 (314)
254 2pvf_A Fibroblast growth facto 99.9 1.9E-23 6.4E-28 226.0 15.4 164 642-813 34-210 (334)
255 3pg1_A Mitogen-activated prote 99.9 1.4E-23 4.9E-28 229.7 14.4 164 633-812 12-186 (362)
256 1qpc_A LCK kinase; alpha beta 99.9 1.9E-23 6.4E-28 219.9 14.7 152 641-813 11-162 (279)
257 1p4o_A Insulin-like growth fac 99.9 1E-23 3.5E-28 226.9 12.8 171 633-813 15-191 (322)
258 2fst_X Mitogen-activated prote 99.9 1.1E-23 3.8E-28 230.4 13.1 154 642-812 28-184 (367)
259 2b9h_A MAP kinase FUS3, mitoge 99.9 2.2E-23 7.6E-28 227.3 15.3 154 642-812 10-164 (353)
260 2r3i_A Cell division protein k 99.9 1.7E-23 5.8E-28 222.5 13.9 152 643-813 3-156 (299)
261 2i6l_A Mitogen-activated prote 99.9 3.4E-23 1.2E-27 222.4 16.4 153 643-812 11-173 (320)
262 2h8h_A Proto-oncogene tyrosine 99.9 8.8E-24 3E-28 242.9 12.4 154 638-812 262-415 (535)
263 3nsz_A CK II alpha, casein kin 99.9 3.7E-23 1.3E-27 223.3 16.6 148 642-813 35-184 (330)
264 1mqb_A Ephrin type-A receptor 99.9 1.8E-23 6.1E-28 226.0 14.0 152 643-813 44-200 (333)
265 3byv_A Rhoptry kinase; malaria 99.9 3.8E-24 1.3E-28 235.5 8.8 162 641-811 71-257 (377)
266 3f66_A Hepatocyte growth facto 99.9 2.1E-23 7E-28 221.8 14.1 152 643-812 25-180 (298)
267 3pls_A Macrophage-stimulating 99.9 2.7E-23 9.1E-28 220.9 15.0 150 645-812 23-176 (298)
268 3mi9_A Cell division protein k 99.9 2.4E-23 8.1E-28 226.9 14.9 155 642-811 16-175 (351)
269 4glp_A Monocyte differentiatio 99.9 1.2E-23 4.1E-28 225.0 12.3 203 56-281 64-285 (310)
270 3t9t_A Tyrosine-protein kinase 99.9 2.7E-23 9.3E-28 217.0 14.5 149 642-811 7-155 (267)
271 3ll6_A Cyclin G-associated kin 99.9 2.4E-23 8.1E-28 225.3 14.5 161 642-813 27-191 (337)
272 1t46_A HOMO sapiens V-KIT hard 99.9 2.3E-23 8E-28 223.0 14.0 166 641-814 21-199 (313)
273 2ozo_A Tyrosine-protein kinase 99.9 2.2E-23 7.5E-28 243.1 14.8 144 650-813 343-489 (613)
274 3m19_A Variable lymphocyte rec 99.9 1.4E-22 4.8E-27 209.6 19.2 179 57-258 15-193 (251)
275 1csn_A Casein kinase-1; phosph 99.9 4E-23 1.4E-27 219.5 15.5 149 643-813 10-164 (298)
276 4azs_A Methyltransferase WBDD; 99.9 5.7E-24 1.9E-28 245.0 9.5 152 650-824 241-403 (569)
277 3mdy_A Bone morphogenetic prot 99.9 3.7E-23 1.3E-27 224.0 15.2 153 642-813 36-195 (337)
278 4glp_A Monocyte differentiatio 99.9 8.3E-24 2.8E-28 226.2 9.8 224 33-282 65-308 (310)
279 2xir_A Vascular endothelial gr 99.9 2.3E-23 7.9E-28 223.4 13.4 174 633-813 17-201 (316)
280 3kmu_A ILK, integrin-linked ki 99.9 3.1E-23 1.1E-27 217.0 13.9 154 642-811 9-164 (271)
281 4fl3_A Tyrosine-protein kinase 99.9 1.8E-23 6E-28 244.5 13.2 144 649-813 375-522 (635)
282 2ast_B S-phase kinase-associat 99.9 4.8E-25 1.6E-29 238.8 -0.1 212 18-255 35-258 (336)
283 2v62_A Serine/threonine-protei 99.9 2.4E-23 8.2E-28 226.2 13.4 153 643-812 37-205 (345)
284 2ycf_A Serine/threonine-protei 99.9 3.3E-23 1.1E-27 222.9 14.2 149 643-812 10-169 (322)
285 3gxj_A TGF-beta receptor type- 99.9 2.7E-24 9.1E-29 229.2 5.6 153 643-814 3-162 (303)
286 2pml_X PFPK7, Ser/Thr protein 99.9 3.1E-23 1.1E-27 225.7 13.9 157 642-812 30-204 (348)
287 3lzb_A Epidermal growth factor 99.9 2.4E-23 8.2E-28 224.3 12.7 151 643-813 15-170 (327)
288 3dbq_A Dual specificity protei 99.9 3.5E-23 1.2E-27 224.7 14.0 160 642-824 8-173 (343)
289 2xrw_A Mitogen-activated prote 99.9 5.6E-23 1.9E-27 225.6 15.6 153 642-812 24-179 (371)
290 1j1b_A Glycogen synthase kinas 99.9 2.9E-23 9.8E-28 231.5 13.5 165 643-824 54-220 (420)
291 3lm5_A Serine/threonine-protei 99.9 4.6E-23 1.6E-27 222.2 14.6 153 643-813 28-187 (327)
292 3uqc_A Probable conserved tran 99.9 4.6E-23 1.6E-27 217.5 14.2 144 643-808 31-177 (286)
293 2wtk_C Serine/threonine-protei 99.9 6.2E-23 2.1E-27 218.9 15.4 154 642-812 4-161 (305)
294 3cc6_A Protein tyrosine kinase 99.9 3.5E-23 1.2E-27 218.1 13.2 153 641-813 10-166 (281)
295 1xbb_A Tyrosine-protein kinase 99.9 3.6E-23 1.2E-27 219.2 13.3 151 642-813 15-170 (291)
296 4ay9_X Follicle-stimulating ho 99.9 5E-23 1.7E-27 224.0 14.4 208 41-272 18-230 (350)
297 3fme_A Dual specificity mitoge 99.9 3.2E-23 1.1E-27 219.4 12.3 157 641-813 5-163 (290)
298 2vwi_A Serine/threonine-protei 99.9 1.7E-23 5.7E-28 223.0 10.1 160 641-812 13-173 (303)
299 1byg_A CSK, protein (C-termina 99.9 4.1E-23 1.4E-27 217.1 12.9 150 642-812 20-169 (278)
300 3og7_A AKAP9-BRAF fusion prote 99.9 4.5E-23 1.6E-27 218.2 13.2 148 642-812 23-172 (289)
301 2i1m_A Macrophage colony-stimu 99.9 4.4E-23 1.5E-27 223.0 13.2 167 639-813 42-217 (333)
302 1b6c_B TGF-B superfamily recep 99.9 6.8E-23 2.3E-27 222.4 14.6 153 642-813 41-200 (342)
303 3lxp_A Non-receptor tyrosine-p 99.9 7E-23 2.4E-27 219.9 14.5 150 645-813 33-187 (318)
304 1fvr_A Tyrosine-protein kinase 99.9 4.4E-23 1.5E-27 222.4 12.9 161 643-811 25-193 (327)
305 2zmd_A Dual specificity protei 99.9 6.4E-23 2.2E-27 226.4 14.4 159 643-824 56-220 (390)
306 2o6s_A Variable lymphocyte rec 99.9 1.3E-22 4.4E-27 203.5 15.2 185 18-244 5-189 (208)
307 3an0_A Dual specificity mitoge 99.9 5.7E-23 2E-27 222.8 13.3 155 641-811 49-205 (340)
308 1u59_A Tyrosine-protein kinase 99.9 1.1E-22 3.8E-27 214.9 15.0 151 643-813 9-163 (287)
309 2ca6_A RAN GTPase-activating p 99.9 1.5E-24 5.2E-29 239.6 0.6 263 71-395 23-319 (386)
310 4exu_A Mitogen-activated prote 99.9 1E-22 3.6E-27 223.4 15.2 153 642-812 41-196 (371)
311 2yfx_A Tyrosine-protein kinase 99.9 5.3E-23 1.8E-27 221.8 12.6 158 642-812 29-195 (327)
312 2pzi_A Probable serine/threoni 99.9 8.8E-23 3E-27 241.9 15.1 153 643-813 80-234 (681)
313 4hgt_A Casein kinase I isoform 99.9 1.2E-22 4.2E-27 215.4 14.5 152 641-813 7-161 (296)
314 3uzp_A CKI-delta, CKID, casein 99.9 1.6E-22 5.4E-27 214.7 15.3 152 642-814 8-162 (296)
315 3kvw_A DYRK2, dual specificity 99.9 1.3E-22 4.6E-27 226.7 15.3 151 642-812 96-254 (429)
316 3m2w_A MAP kinase-activated pr 99.9 1.2E-22 4.1E-27 216.0 13.9 151 643-812 17-172 (299)
317 3q60_A ROP5B; pseudokinase, tr 99.9 7.3E-23 2.5E-27 224.8 12.3 155 642-812 61-246 (371)
318 3coi_A Mitogen-activated prote 99.9 1.7E-22 5.9E-27 220.2 15.2 153 642-812 23-178 (353)
319 2ast_B S-phase kinase-associat 99.9 1E-23 3.4E-28 228.4 4.9 121 57-181 48-173 (336)
320 3cvr_A Invasion plasmid antige 99.9 4.1E-23 1.4E-27 236.3 10.2 210 8-267 31-253 (571)
321 4e7w_A Glycogen synthase kinas 99.9 1.2E-22 4.2E-27 224.6 13.3 154 643-813 40-195 (394)
322 3e3p_A Protein kinase, putativ 99.9 1.6E-22 5.3E-27 221.2 14.0 167 636-813 16-185 (360)
323 2wei_A Calmodulin-domain prote 99.9 3.1E-22 1.1E-26 211.4 15.7 152 642-813 21-177 (287)
324 1blx_A Cyclin-dependent kinase 99.9 1.5E-22 5E-27 218.2 13.3 159 640-812 8-172 (326)
325 2jii_A Serine/threonine-protei 99.9 4.6E-23 1.6E-27 224.7 9.4 152 643-813 42-214 (352)
326 2ca6_A RAN GTPase-activating p 99.9 2.3E-24 7.7E-29 238.2 -1.3 257 120-420 24-320 (386)
327 2iwi_A Serine/threonine-protei 99.9 7.5E-23 2.6E-27 219.0 10.6 153 641-813 29-193 (312)
328 3sv0_A Casein kinase I-like; t 99.9 2.5E-22 8.6E-27 226.5 15.2 152 642-814 6-160 (483)
329 1h6u_A Internalin H; cell adhe 99.9 6.6E-22 2.3E-26 210.9 17.0 172 53-258 38-209 (308)
330 2j0j_A Focal adhesion kinase 1 99.9 3E-22 1E-26 235.0 15.1 152 642-813 389-544 (656)
331 1u46_A ACK-1, activated CDC42 99.9 2.3E-22 7.8E-27 212.9 12.8 152 642-813 17-174 (291)
332 3rgf_A Cyclin-dependent kinase 99.9 2.8E-22 9.5E-27 222.8 13.4 156 645-812 22-184 (405)
333 3a99_A Proto-oncogene serine/t 99.9 2.1E-22 7.2E-27 216.3 11.4 152 642-813 42-203 (320)
334 1wak_A Serine/threonine-protei 99.9 3.4E-22 1.2E-26 221.5 13.4 140 643-797 37-184 (397)
335 1h6u_A Internalin H; cell adhe 99.9 1.4E-21 4.7E-26 208.5 17.3 192 32-259 41-232 (308)
336 3qa8_A MGC80376 protein; kinas 99.9 1.6E-22 5.3E-27 233.1 10.5 159 643-813 14-177 (676)
337 1z57_A Dual specificity protei 99.9 5.1E-22 1.8E-26 214.9 13.9 150 643-812 14-189 (339)
338 3fhr_A MAP kinase-activated pr 99.9 7.1E-22 2.4E-26 213.7 14.3 153 642-812 27-183 (336)
339 3aln_A Dual specificity mitoge 99.9 7.7E-22 2.6E-26 212.7 14.5 157 642-813 21-179 (327)
340 4ay9_X Follicle-stimulating ho 99.9 1E-21 3.6E-26 213.6 15.6 233 20-276 9-254 (350)
341 2vx3_A Dual specificity tyrosi 99.9 8E-22 2.7E-26 217.3 14.3 155 640-812 51-213 (382)
342 1zar_A RIO2 kinase; serine kin 99.9 1.8E-21 6.1E-26 204.2 15.2 143 637-812 84-244 (282)
343 3cek_A Dual specificity protei 99.9 5.7E-22 2E-26 212.3 10.6 159 632-813 17-179 (313)
344 2dyl_A Dual specificity mitoge 99.9 2.1E-21 7.3E-26 208.2 14.0 153 641-812 23-177 (318)
345 2eu9_A Dual specificity protei 99.9 1.9E-21 6.4E-26 212.0 13.6 150 643-812 19-194 (355)
346 3e6j_A Variable lymphocyte rec 99.8 9.7E-21 3.3E-25 192.6 16.9 156 10-181 9-164 (229)
347 2o6s_A Variable lymphocyte rec 99.8 7.6E-21 2.6E-25 190.5 15.6 181 59-269 10-190 (208)
348 2rio_A Serine/threonine-protei 99.8 1.3E-21 4.6E-26 219.0 11.2 151 645-813 17-181 (434)
349 1q8y_A SR protein kinase; tran 99.8 1.7E-21 5.7E-26 214.1 11.2 156 643-813 19-191 (373)
350 3p23_A Serine/threonine-protei 99.8 1.4E-21 4.9E-26 218.2 10.4 148 642-813 23-176 (432)
351 2y4i_B KSR2, HKSR2, kinase sup 99.8 5.4E-22 1.9E-26 213.0 6.5 151 638-811 28-180 (319)
352 3en9_A Glycoprotease, O-sialog 99.8 1.6E-21 5.5E-26 223.3 9.2 136 646-813 339-482 (540)
353 3cvr_A Invasion plasmid antige 99.8 1.2E-20 4.1E-25 216.0 15.8 188 298-523 59-253 (571)
354 2v70_A SLIT-2, SLIT homolog 2 99.8 4.9E-20 1.7E-24 186.2 17.4 143 36-181 15-158 (220)
355 2v9t_B SLIT homolog 2 protein 99.8 6.8E-20 2.3E-24 185.1 16.6 145 36-183 15-159 (220)
356 2xot_A Amphoterin-induced prot 99.8 2.4E-20 8.4E-25 203.6 14.1 179 36-258 22-203 (361)
357 2v9t_B SLIT homolog 2 protein 99.8 7.5E-20 2.6E-24 184.8 14.8 148 19-166 10-166 (220)
358 3dzo_A Rhoptry kinase domain; 99.8 2.2E-20 7.4E-25 207.8 11.7 164 640-812 75-263 (413)
359 2xot_A Amphoterin-induced prot 99.8 9.1E-20 3.1E-24 199.1 15.7 158 20-177 18-188 (361)
360 2v70_A SLIT-2, SLIT homolog 2 99.8 1.1E-19 3.7E-24 183.6 13.1 151 19-169 10-170 (220)
361 3e6j_A Variable lymphocyte rec 99.8 6.2E-19 2.1E-23 179.3 17.9 154 58-259 21-174 (229)
362 1m9s_A Internalin B; cell inva 99.8 1E-19 3.5E-24 210.6 12.6 189 36-260 25-213 (605)
363 1h6t_A Internalin B; cell adhe 99.8 1.6E-19 5.5E-24 190.7 13.1 187 37-259 29-215 (291)
364 1h6t_A Internalin B; cell adhe 99.8 3.6E-19 1.2E-23 188.0 13.7 170 32-235 46-215 (291)
365 1zth_A RIO1 serine protein kin 99.8 1.7E-19 5.8E-24 186.9 10.7 138 645-811 49-220 (258)
366 4b8c_D Glucose-repressible alc 99.8 3.3E-20 1.1E-24 220.2 5.4 210 12-254 154-369 (727)
367 1m9s_A Internalin B; cell inva 99.8 5.2E-19 1.8E-23 204.7 14.5 135 218-401 85-219 (605)
368 1dce_A Protein (RAB geranylger 99.8 2.6E-21 8.9E-26 222.7 -8.7 184 53-279 346-544 (567)
369 1w8a_A SLIT protein; signaling 99.8 4.4E-18 1.5E-22 167.8 13.6 132 35-169 11-143 (192)
370 1dce_A Protein (RAB geranylger 99.8 8E-21 2.8E-25 218.6 -7.6 190 295-517 346-550 (567)
371 4b8c_D Glucose-repressible alc 99.7 6.1E-19 2.1E-23 209.4 7.7 197 220-462 173-369 (727)
372 4ezg_A Putative uncharacterize 99.7 4E-18 1.4E-22 169.0 11.6 154 77-257 41-194 (197)
373 1xeu_A Internalin C; cellular 99.7 1.4E-18 4.7E-23 180.6 8.3 170 55-259 18-187 (263)
374 1w8a_A SLIT protein; signaling 99.7 5.1E-18 1.7E-22 167.4 10.8 120 59-181 11-131 (192)
375 4ezg_A Putative uncharacterize 99.7 6.9E-18 2.4E-22 167.3 11.4 142 32-181 44-186 (197)
376 1xeu_A Internalin C; cellular 99.7 5.7E-18 2E-22 175.9 10.5 169 32-235 19-187 (263)
377 3sb4_A Hypothetical leucine ri 99.7 2.6E-18 8.8E-23 185.1 5.8 258 55-338 48-328 (329)
378 2je0_A Acidic leucine-rich nuc 99.7 2.5E-17 8.5E-22 155.3 10.3 128 55-184 16-148 (149)
379 2o6r_A Variable lymphocyte rec 99.7 7.9E-17 2.7E-21 156.7 14.0 129 38-169 13-141 (177)
380 2wfh_A SLIT homolog 2 protein 99.7 1.2E-16 4.2E-21 157.5 14.6 127 36-166 14-140 (193)
381 2ell_A Acidic leucine-rich nuc 99.7 4.2E-17 1.4E-21 157.1 10.3 127 55-183 23-154 (168)
382 2ell_A Acidic leucine-rich nuc 99.7 2.3E-17 7.7E-22 159.1 7.5 136 32-170 24-164 (168)
383 2je0_A Acidic leucine-rich nuc 99.7 3.8E-17 1.3E-21 154.0 7.1 128 32-161 17-149 (149)
384 2wfh_A SLIT homolog 2 protein 99.7 3.6E-16 1.2E-20 154.1 13.6 121 59-183 13-133 (193)
385 2o6r_A Variable lymphocyte rec 99.7 6.6E-16 2.3E-20 150.1 13.6 133 58-212 9-141 (177)
386 3sb4_A Hypothetical leucine ri 99.7 3.2E-16 1.1E-20 168.7 12.3 256 31-305 48-328 (329)
387 4fdw_A Leucine rich hypothetic 99.6 1.5E-14 5.2E-19 159.0 21.3 265 55-392 112-383 (401)
388 4gyi_A RIO2 kinase; protein ki 99.6 3.5E-16 1.2E-20 167.9 7.7 135 644-809 96-264 (397)
389 4fdw_A Leucine rich hypothetic 99.6 2.5E-14 8.6E-19 157.3 21.0 203 43-275 123-330 (401)
390 1a9n_A U2A', U2A'; complex (nu 99.6 2.3E-15 7.9E-20 146.1 9.8 128 51-184 14-148 (176)
391 3g39_A Variable lymphocyte rec 99.6 1.3E-14 4.3E-19 139.8 12.6 104 60-166 13-116 (170)
392 1a9n_A U2A', U2A'; complex (nu 99.6 2.8E-15 9.5E-20 145.5 7.5 129 32-166 19-154 (176)
393 1ds9_A Outer arm dynein; leuci 99.6 1.5E-17 5E-22 165.0 -9.4 146 32-182 18-180 (198)
394 3g39_A Variable lymphocyte rec 99.5 2.2E-14 7.4E-19 138.2 12.1 107 35-144 12-118 (170)
395 2r9u_A Variable lymphocyte rec 99.5 2.8E-14 9.5E-19 137.9 12.6 86 80-165 33-118 (174)
396 2r9u_A Variable lymphocyte rec 99.5 3.3E-14 1.1E-18 137.4 13.1 106 35-143 15-120 (174)
397 1ds9_A Outer arm dynein; leuci 99.5 1.2E-16 4.1E-21 158.5 -4.6 125 52-181 14-145 (198)
398 4fs7_A Uncharacterized protein 99.5 9.8E-13 3.3E-17 145.1 24.0 308 47-387 62-374 (394)
399 4fs7_A Uncharacterized protein 99.5 9.8E-13 3.3E-17 145.1 21.6 161 67-254 58-218 (394)
400 2ifg_A High affinity nerve gro 99.4 8.3E-13 2.8E-17 143.0 10.7 76 48-124 24-100 (347)
401 2ifg_A High affinity nerve gro 99.4 1.3E-12 4.6E-17 141.4 10.7 104 60-166 12-117 (347)
402 4gt6_A Cell surface protein; l 99.3 4E-10 1.4E-14 124.1 25.6 162 68-255 51-216 (394)
403 3un9_A NLR family member X1; l 99.2 8.8E-14 3E-18 151.5 -7.1 110 56-165 72-196 (372)
404 3tm0_A Aminoglycoside 3'-phosp 99.2 3E-11 1E-15 125.2 10.0 146 641-810 12-214 (263)
405 4gt6_A Cell surface protein; l 99.2 1.2E-09 4.1E-14 120.3 23.2 131 49-184 56-190 (394)
406 3un9_A NLR family member X1; l 99.2 4.2E-13 1.4E-17 146.1 -5.5 160 32-210 72-254 (372)
407 1nd4_A Aminoglycoside 3'-phosp 99.1 1.4E-10 4.8E-15 119.8 8.3 141 642-811 19-216 (264)
408 3dxp_A Putative acyl-COA dehyd 98.9 3.3E-09 1.1E-13 115.2 12.3 146 647-810 42-249 (359)
409 4h09_A Hypothetical leucine ri 98.9 6.1E-08 2.1E-12 105.9 20.9 95 327-425 259-353 (379)
410 4h09_A Hypothetical leucine ri 98.9 1.9E-07 6.5E-12 102.0 23.2 147 238-405 211-358 (379)
411 3rw6_A Nuclear RNA export fact 98.9 6.6E-11 2.2E-15 121.0 -4.4 163 17-183 75-258 (267)
412 2ra8_A Uncharacterized protein 98.8 1.9E-09 6.6E-14 116.1 2.7 131 32-166 107-266 (362)
413 2ra8_A Uncharacterized protein 98.6 4.8E-09 1.6E-13 113.1 1.5 102 56-160 107-227 (362)
414 1io0_A Tropomodulin; LRR prote 98.6 2.9E-09 1E-13 103.5 -2.8 119 47-165 27-164 (185)
415 3rw6_A Nuclear RNA export fact 98.5 9.2E-09 3.2E-13 105.1 -0.2 105 52-158 137-257 (267)
416 3r70_A Aminoglycoside phosphot 98.5 7.8E-07 2.7E-11 94.6 12.6 137 645-811 39-239 (320)
417 3sg8_A APH(2'')-ID; antibiotic 98.4 3.6E-07 1.2E-11 96.5 9.2 140 648-810 25-224 (304)
418 3d1u_A Putative fructosamine-3 98.4 1.1E-06 3.7E-11 91.6 11.9 152 646-809 18-216 (288)
419 1io0_A Tropomodulin; LRR prote 98.3 8.2E-08 2.8E-12 93.2 0.5 112 30-141 34-164 (185)
420 3tdw_A Gentamicin resistance p 98.3 4.3E-06 1.5E-10 88.2 12.7 139 648-811 24-226 (306)
421 4gkh_A Aminoglycoside 3'-phosp 98.2 5.6E-06 1.9E-10 85.6 11.0 138 649-810 30-224 (272)
422 3ovc_A Hygromycin-B 4-O-kinase 98.1 1.3E-05 4.3E-10 86.6 12.1 154 646-810 44-244 (362)
423 3ats_A Putative uncharacterize 97.9 2.4E-05 8.3E-10 84.3 10.2 85 648-734 25-122 (357)
424 2olc_A MTR kinase, methylthior 97.9 3.5E-05 1.2E-09 84.4 10.2 76 648-730 35-120 (397)
425 2q83_A YTAA protein; 2635576, 97.7 0.00016 5.4E-09 77.3 12.3 156 648-809 37-252 (346)
426 3f7w_A Putative fructosamine-3 97.7 0.00011 3.6E-09 76.6 10.4 78 645-732 17-97 (288)
427 3e4g_A ATP synthase subunit S, 97.6 1.6E-05 5.5E-10 75.1 1.7 84 80-163 61-150 (176)
428 3jr1_A Putative fructosamine-3 97.5 0.00051 1.7E-08 72.0 11.5 149 646-805 39-232 (312)
429 3e4g_A ATP synthase subunit S, 97.4 2E-05 6.7E-10 74.5 0.1 84 56-139 61-150 (176)
430 2pyw_A Uncharacterized protein 97.2 0.00098 3.4E-08 73.4 10.7 32 778-810 231-262 (420)
431 1pgv_A TMD-1, tropomodulin TMD 97.2 5.5E-05 1.9E-09 72.8 -0.1 113 52-164 37-169 (197)
432 2ppq_A HSK, HK, homoserine kin 97.1 0.00079 2.7E-08 71.1 8.2 171 633-809 7-217 (322)
433 1zyl_A Hypothetical protein YI 97.0 0.002 6.9E-08 68.1 10.0 81 648-732 31-114 (328)
434 3rfe_A Platelet glycoprotein I 96.9 0.0018 6.3E-08 58.1 7.0 55 60-116 12-67 (130)
435 3dxq_A Choline/ethanolamine ki 96.9 0.0031 1.1E-07 65.8 9.9 73 646-732 21-95 (301)
436 3rfe_A Platelet glycoprotein I 96.9 0.0018 6E-08 58.2 6.8 56 36-93 12-68 (130)
437 1pgv_A TMD-1, tropomodulin TMD 96.7 0.00035 1.2E-08 67.2 1.3 111 31-141 40-170 (197)
438 1nw1_A Choline kinase (49.2 KD 96.7 0.0041 1.4E-07 68.4 9.3 74 648-732 78-159 (429)
439 2qg7_A Ethanolamine kinase PV0 96.6 0.011 3.9E-07 65.2 12.3 75 648-732 113-188 (458)
440 3feg_A Choline/ethanolamine ki 96.5 0.0075 2.6E-07 64.8 9.9 145 648-809 55-254 (379)
441 3csv_A Aminoglycoside phosphot 96.1 0.017 5.7E-07 61.1 10.0 33 778-810 182-218 (333)
442 3c5i_A Choline kinase; choline 96.1 0.012 4.2E-07 63.2 9.1 75 648-732 38-121 (369)
443 3i1a_A Spectinomycin phosphotr 95.7 0.053 1.8E-06 57.4 11.7 32 779-810 206-237 (339)
444 3f2s_A CK, chetk-alpha, cholin 94.8 0.11 3.8E-06 55.9 10.7 31 779-809 244-280 (401)
445 3mes_A Choline kinase; malaria 93.6 0.12 4.1E-06 56.2 7.8 75 648-732 75-157 (424)
446 3g15_A CK, chetk-alpha, cholin 86.3 0.49 1.7E-05 51.1 4.4 30 781-810 246-281 (401)
447 3cxl_A N-chimerin; SH2, RHO-GA 83.8 0.1 3.5E-06 57.7 -2.6 60 648-710 147-214 (463)
448 4ann_A ESSB; membrane protein, 69.2 5.9 0.0002 38.1 5.4 59 750-813 74-132 (215)
449 4ano_A ESSB; membrane protein, 65.7 7.4 0.00025 37.6 5.4 59 750-813 78-137 (219)
450 2jwa_A Receptor tyrosine-prote 54.7 3.1 0.00011 28.5 0.4 12 604-615 29-40 (44)
451 2lz0_A Uncharacterized protein 53.9 13 0.00044 30.9 4.2 49 140-189 8-56 (100)
452 2lz0_A Uncharacterized protein 52.6 29 0.00099 28.7 6.2 45 92-137 8-52 (100)
453 2l2t_A Receptor tyrosine-prote 49.0 4.5 0.00015 27.8 0.5 6 608-613 32-37 (44)
454 1cja_A Protein (actin-fragmin 45.7 1.7E+02 0.0058 30.0 11.7 146 647-811 73-239 (342)
455 3ox7_P MH027; urokinase-type p 22.2 27 0.00094 19.2 0.7 12 16-27 4-15 (23)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.3e-75 Score=701.39 Aligned_cols=551 Identities=33% Similarity=0.511 Sum_probs=405.5
Q ss_pred CCcccccCCCCCCCCceeeceeecCCCCcEEEEECCCCCCccc---cC-----------------------cCCCCCCCC
Q 003368 5 YPEGVLNSWNDSHHFCDWEGITCSPRHRRVTVLDLKSKGLIGS---LS-----------------------PQIGNLSFL 58 (825)
Q Consensus 5 ~~~~~~~~w~~~~~~C~~~g~~c~~~~~~l~~l~L~~n~l~~~---~~-----------------------~~~~~l~~L 58 (825)
||. ++++|..+++||.|.||+|+ .++|+.|||+++++.|. +| +.|+.+++|
T Consensus 26 ~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L 102 (768)
T 3rgz_A 26 DKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASL 102 (768)
T ss_dssp CTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTC
T ss_pred Ccc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCC
Confidence 887 89999888899999999998 58999999999999886 43 578889999
Q ss_pred CEEEcCCCcccccCCc--cccCCCCCCEEECCCCcCCCCCCcCC-CCCCCCCEEEcCCCCCCCCCChh---hhc------
Q 003368 59 REIHLSNNTIQGKIPG--EIGRLFRLEALYLSHNSLVGEIPGNL-SYCSRLIGLYLGRNKLEGSIPSE---FVS------ 126 (825)
Q Consensus 59 ~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~---~~~------ 126 (825)
++|||++|.++|.+|. .|+++++|++|||++|.+++..|..+ ..+++|++|||++|++++..|.. +.+
T Consensus 103 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~ 182 (768)
T 3rgz_A 103 TSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKH 182 (768)
T ss_dssp CEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCE
T ss_pred CEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCE
Confidence 9999999999998888 99999999999999999998888776 78888888888888888777665 444
Q ss_pred ----------------ccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCc----
Q 003368 127 ----------------LYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGT---- 186 (825)
Q Consensus 127 ----------------l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~---- 186 (825)
+++|++|+|++|++++.+|. |+++++|++|+|++|++++.+|..|+++++|++|+++++
T Consensus 183 L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 261 (768)
T 3rgz_A 183 LAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261 (768)
T ss_dssp EECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEE
T ss_pred EECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccC
Confidence 44555555555555555554 666677777777777776666777777777777766642
Q ss_pred -CCccccCCCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccCccccC-c
Q 003368 187 -IPPSIYNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGKLSVN-F 264 (825)
Q Consensus 187 -~p~~i~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~-~ 264 (825)
+|.. .++.|+.|++++|+++|.+|..++..+++|++|+|++|.+++.+|..|.++++|++|+|++|++.+.+|.. +
T Consensus 262 ~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l 339 (768)
T 3rgz_A 262 PIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL 339 (768)
T ss_dssp SCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHH
T ss_pred ccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHH
Confidence 2222 56666666777777766777766644577777777777777777777777777777777777777666654 7
Q ss_pred CCCCCCcEEEcccccCCCCCCCc---------------------------------------------cccccccccCCC
Q 003368 265 GDMKSLAYLNVAINNLGSGESDE---------------------------------------------MSFIHSLANCSN 299 (825)
Q Consensus 265 ~~l~~L~~L~ls~N~l~~~~~~~---------------------------------------------~~~~~~~~~l~~ 299 (825)
..+++|++|+++.|.+....... ...|..+.++++
T Consensus 340 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~ 419 (768)
T 3rgz_A 340 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE 419 (768)
T ss_dssp TTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTT
T ss_pred hcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCC
Confidence 77777777777777664211100 012233444444
Q ss_pred CCEEEcccccccccCCCCcccccCCccccCCCCcCEEEcccCcccccCCccccCCCCCCEEEccccccccccCccccCCC
Q 003368 300 LSFLNLVANQFKGALPHSIVSGSIPSEIGKLVSLYLIEMDHNQFEGKIPEEMSRLQNLQFLNMRHNQLSGEIPSSFGNLS 379 (825)
Q Consensus 300 L~~L~L~~N~l~~~~~~~~~~~~ip~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 379 (825)
|+.|++++|++++ .+|..+..+++|+.|++++|++++.+|..+..+++|++|+|++|++.+.+|.++.+++
T Consensus 420 L~~L~Ls~N~l~~---------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 490 (768)
T 3rgz_A 420 LVSLHLSFNYLSG---------TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 490 (768)
T ss_dssp CCEEECCSSEEES---------CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred CCEEECcCCcccC---------cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCC
Confidence 5555555554444 4445555555555555555555555555555555555555555555555555555555
Q ss_pred CCcEEEcccCccccccCCCCCCCCccceeecCCCCCccccchhhhcccccccccccCCCccccCCC--------------
Q 003368 380 SLVKLILGNNNLSGVIPSSLGNLKQLALLHLFQNDLSGAIPEEIFNISHMSDSLNFARNHLVGSIP-------------- 445 (825)
Q Consensus 380 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~ip~~~~~~~~l~~~l~l~~N~l~~~~p-------------- 445 (825)
+|++|+|++|++++.+|.+++.+++|++|++++|+++|.+|..+..+..+ +.|++++|+++|.+|
T Consensus 491 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L-~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~ 569 (768)
T 3rgz_A 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL-IWLDLNTNLFNGTIPAAMFKQSGKIAANF 569 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTC-CEEECCSSEEESBCCGGGGTTTTCBCCST
T ss_pred CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCC-CEEECCCCccCCcCChHHhcccchhhhhc
Confidence 55555555555555555555555566666666666655555555555554 455555555555555
Q ss_pred --------------------------------------------------------ccccccccccEEeecCceecccCC
Q 003368 446 --------------------------------------------------------PKIGNLKVLRMFVVSSNNLSGEIP 469 (825)
Q Consensus 446 --------------------------------------------------------~~~~~l~~L~~L~ls~N~l~g~~p 469 (825)
..++.++.|+.||+++|+++|.+|
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip 649 (768)
T 3rgz_A 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649 (768)
T ss_dssp TCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC
T ss_pred cccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC
Confidence 445556789999999999999999
Q ss_pred ccccCCCCCCEEEccCCcCCCCCCccccCCCCCCEEECCCCccccccCcccccc-cCceeeCCCCcceecCCCCCccCcc
Q 003368 470 SEIGSCFYLQEIYMAENFFRGSIPSSLVSLKDLREIDLSQNNLSGKIPISLERL-PLEYLNLSFNDLEGQVPTKGIFANA 548 (825)
Q Consensus 470 ~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~~L~~Ldls~N~l~~~~p~~~~~l-~L~~l~ls~N~l~g~~p~~~~~~~~ 548 (825)
.+++.++.|+.|+|++|+++|.+|..++++++|+.||||+|+++|.+|..+..+ .|++||+|+|+++|.||..++|.++
T Consensus 650 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~ 729 (768)
T 3rgz_A 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF 729 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGS
T ss_pred HHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccC
Confidence 999999999999999999999999999999999999999999999999999999 6999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCCCcCCCCCCCCC
Q 003368 549 SAISVSGNSNRLCGGIPELQLPKCPKNN 576 (825)
Q Consensus 549 ~~~~~~~n~~~lc~~~~~~~~~~~~~~~ 576 (825)
...+|.||+ .+||.+. ++|....
T Consensus 730 ~~~~~~gN~-~Lcg~~l----~~C~~~~ 752 (768)
T 3rgz_A 730 PPAKFLNNP-GLCGYPL----PRCDPSN 752 (768)
T ss_dssp CGGGGCSCT-EEESTTS----CCCCSCC
T ss_pred CHHHhcCCc-hhcCCCC----cCCCCCc
Confidence 999999999 9999752 3786544
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.7e-63 Score=598.60 Aligned_cols=488 Identities=33% Similarity=0.495 Sum_probs=367.7
Q ss_pred CcEEEEECCCCCCccccCcC---CCCCCCCCEEEcCCCccc----------------------ccCCccccCCCCCCEEE
Q 003368 32 RRVTVLDLKSKGLIGSLSPQ---IGNLSFLREIHLSNNTIQ----------------------GKIPGEIGRLFRLEALY 86 (825)
Q Consensus 32 ~~l~~l~L~~n~l~~~~~~~---~~~l~~L~~L~Ls~N~l~----------------------~~~p~~~~~l~~L~~L~ 86 (825)
.+++.|||++|++.+..|.. +.++++|++|+|++|+++ +.+|. |+++++|++|+
T Consensus 151 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~ 229 (768)
T 3rgz_A 151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLD 229 (768)
T ss_dssp TTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEE
T ss_pred CCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEE
Confidence 45666666666666655544 445555555555555544 44443 44444455555
Q ss_pred CCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeeccccccccccCccCCCC-CCCCEEEcccCcCc
Q 003368 87 LSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNI-TSLEAISLAYNSLG 165 (825)
Q Consensus 87 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~ 165 (825)
|++|++++.+|..|..+++|++|+|++|++++.+|.. .+++|++|+|++|++++.+|..+..+ ++|++|+|++|+++
T Consensus 230 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~ 307 (768)
T 3rgz_A 230 ISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307 (768)
T ss_dssp CCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEE
T ss_pred CcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCC
Confidence 5555444444444444555555555555544444432 44455555555555555555555543 66666666666666
Q ss_pred ccCCcccccccccceecCcC-----cCCcc-ccCCCCCceeecCCccccccCCchhhhcCC-CCcEEEcccccCCCCCCc
Q 003368 166 GNIPSSLGQLKELKSLGLGG-----TIPPS-IYNLSLLANFSVPENRLHGSLPPSLGLTLS-NLQLFQISNNFFSGSFPL 238 (825)
Q Consensus 166 ~~~p~~~~~l~~L~~L~L~~-----~~p~~-i~~l~~l~~l~l~~N~l~~~lp~~~~~~l~-~L~~L~Ls~N~l~~~~p~ 238 (825)
+.+|..|+++++|++|++++ .+|.. +..++.|+.|++++|+++|.+|..+. .++ +|+.|+|++|.+++.+|.
T Consensus 308 ~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~~L~~L~Ls~N~l~~~~~~ 386 (768)
T 3rgz_A 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT-NLSASLLTLDLSSNNFSGPILP 386 (768)
T ss_dssp ECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHH-HHTTTCSEEECCSSEEEEECCT
T ss_pred CccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHH-hhhcCCcEEEccCCCcCCCcCh
Confidence 66666666666666666653 34443 56666666666666666666666665 343 666666666666666666
Q ss_pred cccC--CCCccEEEeecccccCccccCcCCCCCCcEEEcccccCCCCCCCccccccccccCCCCCEEEcccccccccCCC
Q 003368 239 AFSN--ASNLQSLEILGNNFFGKLSVNFGDMKSLAYLNVAINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALPH 316 (825)
Q Consensus 239 ~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 316 (825)
.+.. +++|++|+|++|++.+.+|..+..+++|++|++++|.+... .|..+..+++|+.|++++|.+++
T Consensus 387 ~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~------~p~~l~~l~~L~~L~L~~n~l~~---- 456 (768)
T 3rgz_A 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT------IPSSLGSLSKLRDLKLWLNMLEG---- 456 (768)
T ss_dssp TTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESC------CCGGGGGCTTCCEEECCSSCCCS----
T ss_pred hhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCc------ccHHHhcCCCCCEEECCCCcccC----
Confidence 6555 67788888888888878888888888888888888887643 36678899999999999999987
Q ss_pred CcccccCCccccCCCCcCEEEcccCcccccCCccccCCCCCCEEEccccccccccCccccCCCCCcEEEcccCccccccC
Q 003368 317 SIVSGSIPSEIGKLVSLYLIEMDHNQFEGKIPEEMSRLQNLQFLNMRHNQLSGEIPSSFGNLSSLVKLILGNNNLSGVIP 396 (825)
Q Consensus 317 ~~~~~~ip~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 396 (825)
.+|..+..+++|+.|++++|++++.+|..+.++++|++|+|++|++.+.+|.+++.+++|++|+|++|+++|.+|
T Consensus 457 -----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 531 (768)
T 3rgz_A 457 -----EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531 (768)
T ss_dssp -----CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred -----cCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCC
Confidence 788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccceeecCCCCCccccchhhhccc-------------------------------------------------
Q 003368 397 SSLGNLKQLALLHLFQNDLSGAIPEEIFNIS------------------------------------------------- 427 (825)
Q Consensus 397 ~~~~~l~~L~~L~L~~N~l~g~ip~~~~~~~------------------------------------------------- 427 (825)
..++.+++|+.|++++|+++|.+|..++...
T Consensus 532 ~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 611 (768)
T 3rgz_A 532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTC
T ss_pred HHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccc
Confidence 9999999999999999999999998776421
Q ss_pred --------------------ccccccccCCCccccCCCccccccccccEEeecCceecccCCccccCCCCCCEEEccCCc
Q 003368 428 --------------------HMSDSLNFARNHLVGSIPPKIGNLKVLRMFVVSSNNLSGEIPSEIGSCFYLQEIYMAENF 487 (825)
Q Consensus 428 --------------------~l~~~l~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~ 487 (825)
..++.||+++|+++|.+|..+++++.|+.|+|++|+++|.+|.+++.+++|+.|+|++|+
T Consensus 612 ~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp CSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred ccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc
Confidence 112579999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccCCCCCCEEECCCCccccccCcccccccCceeeCCCCc-ceec
Q 003368 488 FRGSIPSSLVSLKDLREIDLSQNNLSGKIPISLERLPLEYLNLSFND-LEGQ 538 (825)
Q Consensus 488 l~g~~p~~~~~l~~L~~Ldls~N~l~~~~p~~~~~l~L~~l~ls~N~-l~g~ 538 (825)
++|.+|..+..+++|++||+|+|+++|.||..-.-..+....+.+|+ ++|.
T Consensus 692 l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp CEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEEST
T ss_pred ccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCC
Confidence 99999999999999999999999999999975332245566677774 7764
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.3e-57 Score=531.98 Aligned_cols=491 Identities=19% Similarity=0.193 Sum_probs=405.2
Q ss_pred CcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEc
Q 003368 32 RRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYL 111 (825)
Q Consensus 32 ~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 111 (825)
..++.|||++|.+.+..|.+|+++++|++|+|++|++++..|.+|+++++|++|+|++|++++..|..|..+++|++|+|
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 68999999999999988999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccc--eecCcCc---
Q 003368 112 GRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELK--SLGLGGT--- 186 (825)
Q Consensus 112 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~--~L~L~~~--- 186 (825)
++|+|++..|..|.++++|++|+|++|++++..+..+..+++|++|+|++|++++..|..|+.+++|+ .|+++++
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 99999987788999999999999999999986555566699999999999999988899999999999 7888764
Q ss_pred -CCccccCCCCCceeecCCccccc-------------------------cCCchhhhcCC--CCcEEEcccccCCCCCCc
Q 003368 187 -IPPSIYNLSLLANFSVPENRLHG-------------------------SLPPSLGLTLS--NLQLFQISNNFFSGSFPL 238 (825)
Q Consensus 187 -~p~~i~~l~~l~~l~l~~N~l~~-------------------------~lp~~~~~~l~--~L~~L~Ls~N~l~~~~p~ 238 (825)
+++.......|+.+++++|.... .++...+..+. +|+.|++++|.+++..+.
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~ 272 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence 34444555678888888775110 12222222222 678888888888888888
Q ss_pred cccCCCCccEEEeecccccCccccCcCCCCCCcEEEcccccCCCCCCCccccccccccCCCCCEEEcccccccccCCCCc
Q 003368 239 AFSNASNLQSLEILGNNFFGKLSVNFGDMKSLAYLNVAINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALPHSI 318 (825)
Q Consensus 239 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 318 (825)
.|.++++|++|+|++|++. .+|..+..+++|++|++++|.+.... +..+..+++|++|++++|.+.+
T Consensus 273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~n~~~~------ 339 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLC------QISASNFPSLTHLSIKGNTKRL------ 339 (606)
T ss_dssp TTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGG------GGCGGGCTTCSEEECCSCSSCC------
T ss_pred HhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCc------hhhhhccCcCCEEECCCCCccc------
Confidence 8888888888888888887 56677888888888888888876432 4467778888888888888876
Q ss_pred ccccCCc-cccCCCCcCEEEcccCcccccC--CccccCCCCCCEEEccccccccccCccccCCCCCcEEEcccCcccccc
Q 003368 319 VSGSIPS-EIGKLVSLYLIEMDHNQFEGKI--PEEMSRLQNLQFLNMRHNQLSGEIPSSFGNLSSLVKLILGNNNLSGVI 395 (825)
Q Consensus 319 ~~~~ip~-~l~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 395 (825)
.+|. .+..+++|+.|++++|.+++.. |..+..+++|++|++++|++.+..|..|..+++|++|++++|++++..
T Consensus 340 ---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 416 (606)
T 3t6q_A 340 ---ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD 416 (606)
T ss_dssp ---BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCT
T ss_pred ---ccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcc
Confidence 4443 3677888888888888888765 777888888888888888888888888888888888888888888776
Q ss_pred CCC-CCCCCccceeecCCCCCccccchhhhcccccccccccCCCcccc---CCCccccccccccEEeecCceecccCCcc
Q 003368 396 PSS-LGNLKQLALLHLFQNDLSGAIPEEIFNISHMSDSLNFARNHLVG---SIPPKIGNLKVLRMFVVSSNNLSGEIPSE 471 (825)
Q Consensus 396 p~~-~~~l~~L~~L~L~~N~l~g~ip~~~~~~~~l~~~l~l~~N~l~~---~~p~~~~~l~~L~~L~ls~N~l~g~~p~~ 471 (825)
|.. +..+++|+.|++++|.+++..|..+..+..+ +.|++++|++++ ..+..++.+++|+.|++++|++++..|..
T Consensus 417 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 495 (606)
T 3t6q_A 417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL-QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495 (606)
T ss_dssp TCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC-CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT
T ss_pred cchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC-CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhh
Confidence 544 7888888888888888887777777777776 688888888876 23356888888888888888888888888
Q ss_pred ccCCCCCCEEEccCCcCCCCCCccccCCCCCCEEECCCCccccccCcccccc-cCceeeCCCCcceecCC
Q 003368 472 IGSCFYLQEIYMAENFFRGSIPSSLVSLKDLREIDLSQNNLSGKIPISLERL-PLEYLNLSFNDLEGQVP 540 (825)
Q Consensus 472 ~~~l~~L~~L~l~~N~l~g~~p~~~~~l~~L~~Ldls~N~l~~~~p~~~~~l-~L~~l~ls~N~l~g~~p 540 (825)
++.+++|+.|++++|++++..|..+..++.| .||+++|++++.+|..+..+ .|+++++++|++.+..+
T Consensus 496 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp TTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred hccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 8888888888888888888888888888888 88888888888777777777 58888888888876554
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.3e-56 Score=535.19 Aligned_cols=539 Identities=21% Similarity=0.238 Sum_probs=443.8
Q ss_pred CceeeceeecCC--CCcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCC
Q 003368 19 FCDWEGITCSPR--HRRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEI 96 (825)
Q Consensus 19 ~C~~~g~~c~~~--~~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 96 (825)
.|++.+++..|. ..+++.|||++|++.+..+..|.++++|++|+|++|++++..|.+|+++++|++|+|++|+|++..
T Consensus 10 ~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~ 89 (680)
T 1ziw_A 10 DCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 89 (680)
T ss_dssp ECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCC
T ss_pred ECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccC
Confidence 466666666654 368999999999999888889999999999999999999999999999999999999999999877
Q ss_pred CcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccCCcccc--c
Q 003368 97 PGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLG--Q 174 (825)
Q Consensus 97 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~--~ 174 (825)
+..|.++++|++|+|++|+++++.|.+|+++++|++|+|++|++++..|..|+++++|++|+|++|++++..+..|. .
T Consensus 90 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 169 (680)
T 1ziw_A 90 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169 (680)
T ss_dssp TTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGT
T ss_pred hhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccc
Confidence 77899999999999999999988889999999999999999999999999999999999999999999988887765 4
Q ss_pred ccccceecCcCc-----CCccccCC---------------------------CCCceeecCCccccccCCchhhhcCC--
Q 003368 175 LKELKSLGLGGT-----IPPSIYNL---------------------------SLLANFSVPENRLHGSLPPSLGLTLS-- 220 (825)
Q Consensus 175 l~~L~~L~L~~~-----~p~~i~~l---------------------------~~l~~l~l~~N~l~~~lp~~~~~~l~-- 220 (825)
+++|+.|+++++ .|..+..+ +.|+.|++++|.+++..|..+. .++
T Consensus 170 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~-~l~~~ 248 (680)
T 1ziw_A 170 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL-GLKWT 248 (680)
T ss_dssp TCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG-GGGGS
T ss_pred cccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh-ccCcC
Confidence 589999999864 23333332 5677888888888877666654 554
Q ss_pred CCcEEEcccccCCCCCCccccCCCCccEEEeecccccCccccCcCCCCCCcEEEcccccCCCCCCCcccccc----cccc
Q 003368 221 NLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLAYLNVAINNLGSGESDEMSFIH----SLAN 296 (825)
Q Consensus 221 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~----~~~~ 296 (825)
+|+.|+|++|.+++..|..|..+++|++|+|++|++.+..+..|..+++|++|+++.|....... ...+|. .+..
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~lp~i~~~~~~~ 327 (680)
T 1ziw_A 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS-LASLPKIDDFSFQW 327 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-------CCEECTTTTTT
T ss_pred CCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccc-cccccccChhhccc
Confidence 49999999999998888889999999999999999998888888888888888888764331100 001111 4567
Q ss_pred CCCCCEEEcccccccccCCCCccc----------------ccCCc-cccC--CCCcCEEEcccCcccccCCccccCCCCC
Q 003368 297 CSNLSFLNLVANQFKGALPHSIVS----------------GSIPS-EIGK--LVSLYLIEMDHNQFEGKIPEEMSRLQNL 357 (825)
Q Consensus 297 l~~L~~L~L~~N~l~~~~~~~~~~----------------~~ip~-~l~~--l~~L~~L~L~~N~l~~~~p~~~~~l~~L 357 (825)
+++|++|++++|.+++..+..+.. ..++. .+.. .++|+.|++++|++++..|..|..+++|
T Consensus 328 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 407 (680)
T 1ziw_A 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL 407 (680)
T ss_dssp CTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCC
Confidence 778888888888777643322100 00111 1111 2478888888899998889999999999
Q ss_pred CEEEccccccccccC-ccccCCCCCcEEEcccCccccccCCCCCCCCccceeecCCCCCc--cccchhhhcccccccccc
Q 003368 358 QFLNMRHNQLSGEIP-SSFGNLSSLVKLILGNNNLSGVIPSSLGNLKQLALLHLFQNDLS--GAIPEEIFNISHMSDSLN 434 (825)
Q Consensus 358 ~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--g~ip~~~~~~~~l~~~l~ 434 (825)
++|+|++|++.+.+| ..|.++++|++|++++|++.+..+..|..+++|+.|++++|.++ +.+|..+..+..+ +.|+
T Consensus 408 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L-~~L~ 486 (680)
T 1ziw_A 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL-TILD 486 (680)
T ss_dssp CEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC-CEEE
T ss_pred CEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC-CEEE
Confidence 999999999988776 68899999999999999999998999999999999999999987 6788888888887 7899
Q ss_pred cCCCccccCCCccccccccccEEeecCceecccCC--------ccccCCCCCCEEEccCCcCCCCCCccccCCCCCCEEE
Q 003368 435 FARNHLVGSIPPKIGNLKVLRMFVVSSNNLSGEIP--------SEIGSCFYLQEIYMAENFFRGSIPSSLVSLKDLREID 506 (825)
Q Consensus 435 l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p--------~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~~L~~Ld 506 (825)
+++|++++..|..++.+++|+.|++++|++++..+ ..++.+++|+.|++++|+++...+..|..+++|+.||
T Consensus 487 Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 566 (680)
T 1ziw_A 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID 566 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeE
Confidence 99999998888889999999999999999986422 3478899999999999999954445689999999999
Q ss_pred CCCCccccccCcccccc-cCceeeCCCCcceecCCCC-C-ccCccccccccCCCCCCC
Q 003368 507 LSQNNLSGKIPISLERL-PLEYLNLSFNDLEGQVPTK-G-IFANASAISVSGNSNRLC 561 (825)
Q Consensus 507 ls~N~l~~~~p~~~~~l-~L~~l~ls~N~l~g~~p~~-~-~~~~~~~~~~~~n~~~lc 561 (825)
|++|++++..+..+..+ .|+.|++++|++++.+|.. + .+.++....+.+|+ -.|
T Consensus 567 Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~-~~c 623 (680)
T 1ziw_A 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP-FDC 623 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCC-CCB
T ss_pred CCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCC-ccc
Confidence 99999997777777777 6999999999999876642 2 45677788899998 444
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5e-56 Score=522.93 Aligned_cols=497 Identities=20% Similarity=0.184 Sum_probs=370.5
Q ss_pred CCceeeceeecCC--CCcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCC
Q 003368 18 HFCDWEGITCSPR--HRRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGE 95 (825)
Q Consensus 18 ~~C~~~g~~c~~~--~~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 95 (825)
-.|.+.+++..|. ..+++.|||++|++.+..+..|.++++|++|+|++|++++..|.+|+++++|++|+|++|+|++.
T Consensus 16 ~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~ 95 (606)
T 3vq2_A 16 YQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF 95 (606)
T ss_dssp EECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCC
T ss_pred eEccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccccc
Confidence 3455566666554 36899999999999998888999999999999999999998899999999999999999999999
Q ss_pred CCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeecccccccc-ccCccCCCCCCCCEEEcccCcCcccCCccccc
Q 003368 96 IPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQENNLTG-GIPHFLGNITSLEAISLAYNSLGGNIPSSLGQ 174 (825)
Q Consensus 96 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 174 (825)
.|..|.++++|++|+|++|++++..+..|+++++|++|+|++|++++ .+|..|+++++|++|+|++|++++..|..|+.
T Consensus 96 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 175 (606)
T 3vq2_A 96 SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175 (606)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHH
T ss_pred ChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhh
Confidence 99999999999999999999998888899999999999999999986 56999999999999999999999999999999
Q ss_pred ccccc----eecCcCc----CCccccCCCCCceeecCCccccccCCchhhhcCCCCcEEEc-------------------
Q 003368 175 LKELK----SLGLGGT----IPPSIYNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQI------------------- 227 (825)
Q Consensus 175 l~~L~----~L~L~~~----~p~~i~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~L------------------- 227 (825)
+.+|+ +|+++++ +++.......|+.|++++|.+++...+.....+++|+.+++
T Consensus 176 l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~ 255 (606)
T 3vq2_A 176 LRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM 255 (606)
T ss_dssp HHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGG
T ss_pred hhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHh
Confidence 88876 6888764 45555555689999999999875444444447888887776
Q ss_pred --------------ccccCCCCCCccccCCCCccEEEeecccccCccccCcCCCCCCcEEEcccccCCCCCCCccccccc
Q 003368 228 --------------SNNFFSGSFPLAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLAYLNVAINNLGSGESDEMSFIHS 293 (825)
Q Consensus 228 --------------s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~ 293 (825)
..|.+++.+|. |..+++|+.|++++|.+... + .+..+++|+.|++++|.+... | .
T Consensus 256 ~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l-~-~l~~~~~L~~L~l~~n~l~~l-------p-~ 324 (606)
T 3vq2_A 256 EGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYL-E-DVPKHFKWQSLSIIRCQLKQF-------P-T 324 (606)
T ss_dssp TTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCC-C-CCCTTCCCSEEEEESCCCSSC-------C-C
T ss_pred hhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhh-h-hccccccCCEEEcccccCccc-------c-c
Confidence 44555555554 66667777777777766443 3 566666777777777766332 2 2
Q ss_pred cccCCCCCEEEcccccccccCCCCcccccCCccccCCCCcCEEEcccCccccc--CCccccCCCCCCEEEcccccccccc
Q 003368 294 LANCSNLSFLNLVANQFKGALPHSIVSGSIPSEIGKLVSLYLIEMDHNQFEGK--IPEEMSRLQNLQFLNMRHNQLSGEI 371 (825)
Q Consensus 294 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~ 371 (825)
+ .+++|+.|++++|+..+ .+ .+..+++|+.|++++|++++. +|..+..+++|++|++++|.+.+ +
T Consensus 325 ~-~l~~L~~L~l~~n~~~~---------~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~ 391 (606)
T 3vq2_A 325 L-DLPFLKSLTLTMNKGSI---------SF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-M 391 (606)
T ss_dssp C-CCSSCCEEEEESCSSCE---------EC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-E
T ss_pred C-CCCccceeeccCCcCcc---------ch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-c
Confidence 3 56667777777764433 22 345666777777777777655 36666777777777777777663 5
Q ss_pred CccccCCCCCcEEEcccCccccccC-CCCCCCCccceeecCCCCCccccchhhhcccccccccccCCCcccc-CCCcccc
Q 003368 372 PSSFGNLSSLVKLILGNNNLSGVIP-SSLGNLKQLALLHLFQNDLSGAIPEEIFNISHMSDSLNFARNHLVG-SIPPKIG 449 (825)
Q Consensus 372 p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~g~ip~~~~~~~~l~~~l~l~~N~l~~-~~p~~~~ 449 (825)
|..|..+++|++|++++|++.+..| ..+..+++|+.|++++|++++.+|..+..+..+ +.|++++|++++ .+|..++
T Consensus 392 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~ 470 (606)
T 3vq2_A 392 SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL-NTLKMAGNSFKDNTLSNVFA 470 (606)
T ss_dssp CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC-CEEECTTCEEGGGEECSCCT
T ss_pred hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCC-CEEECCCCcCCCcchHHhhc
Confidence 5666777777777777777776665 566677777777777777776666666666665 567777777766 3566677
Q ss_pred ccccccEEeecCceecccCCccccCCCCCCEEEccCCcCCCCCCccccCCCCCCEEECCCCccccccCcccccc-c-Cce
Q 003368 450 NLKVLRMFVVSSNNLSGEIPSEIGSCFYLQEIYMAENFFRGSIPSSLVSLKDLREIDLSQNNLSGKIPISLERL-P-LEY 527 (825)
Q Consensus 450 ~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~~L~~Ldls~N~l~~~~p~~~~~l-~-L~~ 527 (825)
.+++|+.|++++|++++..|..++.+++|+.|++++|++++.+|..+..+++|+.||+++|+++ .+|..+..+ . |++
T Consensus 471 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~ 549 (606)
T 3vq2_A 471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAF 549 (606)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCE
T ss_pred cCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcE
Confidence 7777777777777777666777777777777777777777666777777777777777777776 455555555 2 677
Q ss_pred eeCCCCcceecCC
Q 003368 528 LNLSFNDLEGQVP 540 (825)
Q Consensus 528 l~ls~N~l~g~~p 540 (825)
+++++|++.+..+
T Consensus 550 l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 550 FNLTNNSVACICE 562 (606)
T ss_dssp EECCSCCCCCSST
T ss_pred EEccCCCcccCCc
Confidence 7777777665444
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.7e-55 Score=513.31 Aligned_cols=498 Identities=20% Similarity=0.200 Sum_probs=433.9
Q ss_pred EECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCC
Q 003368 37 LDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKL 116 (825)
Q Consensus 37 l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 116 (825)
+|.++.++. .+|..+.. .+++|||++|+|++..|.+|+++++|++|+|++|+|++..|..|.++++|++|+|++|++
T Consensus 17 ~~c~~~~l~-~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 17 YNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp EECTTSCCS-SCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EECCCCCcc-cCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence 455555554 56666543 789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcC-----Cccc
Q 003368 117 EGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTI-----PPSI 191 (825)
Q Consensus 117 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~-----p~~i 191 (825)
++..|.+|+++++|++|+|++|++++..|..|+++++|++|+|++|++++..+..+..+++|++|+++++- |..+
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 173 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM 173 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHH
T ss_pred cccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhh
Confidence 99999999999999999999999998888999999999999999999998655566669999999998752 4557
Q ss_pred cCCCCCc--eeecCCccccccCCchhhhcCCCCcEEEcccccC--------------------------CCCCCccccCC
Q 003368 192 YNLSLLA--NFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFF--------------------------SGSFPLAFSNA 243 (825)
Q Consensus 192 ~~l~~l~--~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l--------------------------~~~~p~~~~~l 243 (825)
..++.|+ .+++++|.+++..|..+ ...+|+.|++++|.- ..+.+..|..+
T Consensus 174 ~~l~~L~~l~L~l~~n~l~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l 251 (606)
T 3t6q_A 174 SSLQQATNLSLNLNGNDIAGIEPGAF--DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251 (606)
T ss_dssp HTTTTCCSEEEECTTCCCCEECTTTT--TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGG
T ss_pred hhhcccceeEEecCCCccCccChhHh--hhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchh
Confidence 7888888 89999999997655543 457888999888741 11222334444
Q ss_pred C--CccEEEeecccccCccccCcCCCCCCcEEEcccccCCCCCCCccccccccccCCCCCEEEcccccccccCCCCcccc
Q 003368 244 S--NLQSLEILGNNFFGKLSVNFGDMKSLAYLNVAINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALPHSIVSG 321 (825)
Q Consensus 244 ~--~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 321 (825)
. +|+.|++++|.+.+..+..|..+++|++|++++|.+... |..+..+++|++|++++|.+++
T Consensus 252 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l-------p~~l~~l~~L~~L~l~~n~l~~--------- 315 (606)
T 3t6q_A 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL-------PSGLVGLSTLKKLVLSANKFEN--------- 315 (606)
T ss_dssp GGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCC-------CSSCCSCTTCCEEECTTCCCSB---------
T ss_pred hcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCC-------ChhhcccccCCEEECccCCcCc---------
Confidence 3 799999999999999999999999999999999998753 5567889999999999999985
Q ss_pred cCCccccCCCCcCEEEcccCcccccCCc-cccCCCCCCEEEcccccccccc--CccccCCCCCcEEEcccCccccccCCC
Q 003368 322 SIPSEIGKLVSLYLIEMDHNQFEGKIPE-EMSRLQNLQFLNMRHNQLSGEI--PSSFGNLSSLVKLILGNNNLSGVIPSS 398 (825)
Q Consensus 322 ~ip~~l~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 398 (825)
..|..+..+++|+.|++++|.+.+.+|. .+..+++|++|++++|++.+.. |..+..+++|++|++++|++.+..|..
T Consensus 316 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 395 (606)
T 3t6q_A 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA 395 (606)
T ss_dssp GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTT
T ss_pred CchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHH
Confidence 4466788999999999999999977765 5899999999999999999776 888999999999999999999999999
Q ss_pred CCCCCccceeecCCCCCccccchh-hhcccccccccccCCCccccCCCccccccccccEEeecCceeccc---CCccccC
Q 003368 399 LGNLKQLALLHLFQNDLSGAIPEE-IFNISHMSDSLNFARNHLVGSIPPKIGNLKVLRMFVVSSNNLSGE---IPSEIGS 474 (825)
Q Consensus 399 ~~~l~~L~~L~L~~N~l~g~ip~~-~~~~~~l~~~l~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~---~p~~~~~ 474 (825)
|..+++|+.|++++|++++..|.. +..+..+ +.|++++|.+.+..|..++.+++|+.|++++|++++. .+..++.
T Consensus 396 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 474 (606)
T 3t6q_A 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLL-KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474 (606)
T ss_dssp TTTCTTCSEEECTTCCEECCTTCCTTTTCTTC-CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG
T ss_pred hcCCccCCeEECCCCcCCCcccchhhhCcccC-CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc
Confidence 999999999999999999887765 5566666 7999999999999999999999999999999999873 3467999
Q ss_pred CCCCCEEEccCCcCCCCCCccccCCCCCCEEECCCCccccccCcccccc-cCceeeCCCCcceecCCCC-CccCcccccc
Q 003368 475 CFYLQEIYMAENFFRGSIPSSLVSLKDLREIDLSQNNLSGKIPISLERL-PLEYLNLSFNDLEGQVPTK-GIFANASAIS 552 (825)
Q Consensus 475 l~~L~~L~l~~N~l~g~~p~~~~~l~~L~~Ldls~N~l~~~~p~~~~~l-~L~~l~ls~N~l~g~~p~~-~~~~~~~~~~ 552 (825)
+++|+.|++++|++++..|..+..+++|+.||+++|++++.+|..+..+ .| +|++++|++++.+|.. ..+.++....
T Consensus 475 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~ 553 (606)
T 3t6q_A 475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTIN 553 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEE
T ss_pred CCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEe
Confidence 9999999999999999999999999999999999999999999999988 58 9999999999877753 3455667788
Q ss_pred ccCCC
Q 003368 553 VSGNS 557 (825)
Q Consensus 553 ~~~n~ 557 (825)
+.+|+
T Consensus 554 l~~N~ 558 (606)
T 3t6q_A 554 LRQNP 558 (606)
T ss_dssp CTTCC
T ss_pred CCCCC
Confidence 88887
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.9e-57 Score=531.79 Aligned_cols=459 Identities=21% Similarity=0.269 Sum_probs=313.3
Q ss_pred CcccccCCCCCCCCcee---eceeecCCCCcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcc------cc------
Q 003368 6 PEGVLNSWNDSHHFCDW---EGITCSPRHRRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTI------QG------ 70 (825)
Q Consensus 6 ~~~~~~~w~~~~~~C~~---~g~~c~~~~~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l------~~------ 70 (825)
+.....+|..++++|.| .||+|+.. ++|+.|+|+++++.|.+|++|++|++|++|||++|.+ .+
T Consensus 53 ~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~ 131 (636)
T 4eco_A 53 GTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISA 131 (636)
T ss_dssp -----CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCT
T ss_pred CCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCcccccccccc
Confidence 33445689988999999 99999866 7999999999999999999999999999999999987 22
Q ss_pred cCCccccCCCCCCEEECCCCcCCCCCCcCCCCC-------------------CCCCEEEcC--CCCCCCCCChhhhcccc
Q 003368 71 KIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYC-------------------SRLIGLYLG--RNKLEGSIPSEFVSLYN 129 (825)
Q Consensus 71 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-------------------~~L~~L~Ls--~N~l~~~~p~~~~~l~~ 129 (825)
.+|... +.+|+ +++++|.+.+.+|..+..+ ..++.+++. .|++++ +|.+|+++++
T Consensus 132 ~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~ 207 (636)
T 4eco_A 132 NMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTK 207 (636)
T ss_dssp TCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTT
T ss_pred CchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccC
Confidence 344433 45566 7888888887777666521 122333332 578887 7888888888
Q ss_pred cceeeccccccccc-----------------cCccCC--CCCCCCEEEcccCcCcccCCcccccccccceecCcCcCCcc
Q 003368 130 LKELAIQENNLTGG-----------------IPHFLG--NITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPS 190 (825)
Q Consensus 130 L~~L~L~~N~l~~~-----------------~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~ 190 (825)
|++|+|++|++++. +|..++ ++++|++|+|++|++.+.+|..|+++++|++|
T Consensus 208 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L--------- 278 (636)
T 4eco_A 208 LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI--------- 278 (636)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEE---------
T ss_pred CCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEE---------
Confidence 88888888888875 788888 88888888888888888888877777777777
Q ss_pred ccCCCCCceeecCCcc-ccc-cCCchhhhcC------CCCcEEEcccccCCCCCCc--cccCCCCccEEEeecccccCcc
Q 003368 191 IYNLSLLANFSVPENR-LHG-SLPPSLGLTL------SNLQLFQISNNFFSGSFPL--AFSNASNLQSLEILGNNFFGKL 260 (825)
Q Consensus 191 i~~l~~l~~l~l~~N~-l~~-~lp~~~~~~l------~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~ 260 (825)
++++|+ ++| .+|..++ .+ ++|++|+|++|+++ .+|. .|.++++|+.|+|++|++.|.+
T Consensus 279 ----------~Ls~n~~l~~~~lp~~~~-~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~i 346 (636)
T 4eco_A 279 ----------NVACNRGISGEQLKDDWQ-ALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKL 346 (636)
T ss_dssp ----------ECTTCTTSCHHHHHHHHH-HHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEEC
T ss_pred ----------ECcCCCCCccccchHHHH-hhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccch
Confidence 777887 887 7888776 44 88999999999888 6777 8888889999999988888777
Q ss_pred ccCcCCCCCCcEEEcccccCCCCCCCccccccccccCCC-CCEEEcccccccccCCCCcccccCCccccCCC--CcCEEE
Q 003368 261 SVNFGDMKSLAYLNVAINNLGSGESDEMSFIHSLANCSN-LSFLNLVANQFKGALPHSIVSGSIPSEIGKLV--SLYLIE 337 (825)
Q Consensus 261 ~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~~~ip~~l~~l~--~L~~L~ 337 (825)
| .++.+++|++|++++|.+.. +|..+..+++ |+.|++++|+++ .+|..+..+. +|+.|+
T Consensus 347 p-~~~~l~~L~~L~L~~N~l~~-------lp~~l~~l~~~L~~L~Ls~N~l~----------~lp~~~~~~~l~~L~~L~ 408 (636)
T 4eco_A 347 P-AFGSEIKLASLNLAYNQITE-------IPANFCGFTEQVENLSFAHNKLK----------YIPNIFDAKSVSVMSAID 408 (636)
T ss_dssp C-CCEEEEEESEEECCSSEEEE-------CCTTSEEECTTCCEEECCSSCCS----------SCCSCCCTTCSSCEEEEE
T ss_pred h-hhCCCCCCCEEECCCCcccc-------ccHhhhhhcccCcEEEccCCcCc----------ccchhhhhcccCccCEEE
Confidence 7 67777777777777666652 2444566666 666777666665 3454444433 666666
Q ss_pred cccCcccccCCcccc-------CCCCCCEEEccccccccccCccccCCCCCcEEEcccCccccccCCCCCC-C-------
Q 003368 338 MDHNQFEGKIPEEMS-------RLQNLQFLNMRHNQLSGEIPSSFGNLSSLVKLILGNNNLSGVIPSSLGN-L------- 402 (825)
Q Consensus 338 L~~N~l~~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l------- 402 (825)
+++|++++.+|..+. .+++|++|+|++|++.+..+..+..+++|++|+|++|+++ .+|..+.. .
T Consensus 409 Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l 487 (636)
T 4eco_A 409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNT 487 (636)
T ss_dssp CCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTG
T ss_pred CcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccccccccc
Confidence 666666666666666 5566666666666666332233445666666666666666 33433222 2
Q ss_pred CccceeecCCCCCccccchhhhcccccccccccCCCccccCCCccccccccccEEeecCceecccCCccccCCCCCCEEE
Q 003368 403 KQLALLHLFQNDLSGAIPEEIFNISHMSDSLNFARNHLVGSIPPKIGNLKVLRMFVVSSNNLSGEIPSEIGSCFYLQEIY 482 (825)
Q Consensus 403 ~~L~~L~L~~N~l~g~ip~~~~~~~~l~~~l~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~ 482 (825)
++|+.|+|++|+++ .+|..++. ..+++|+.|++++|++++ +|..++.+++|+.|+
T Consensus 488 ~~L~~L~Ls~N~l~-~lp~~~~~-----------------------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~ 542 (636)
T 4eco_A 488 YLLTSIDLRFNKLT-KLSDDFRA-----------------------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFG 542 (636)
T ss_dssp GGCCEEECCSSCCC-BCCGGGST-----------------------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEE
T ss_pred CCccEEECcCCcCC-ccChhhhh-----------------------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEE
Confidence 25666666666665 45544430 144445555555555554 455555555555555
Q ss_pred c------cCCcCCCCCCccccCCCCCCEEECCCCccccccCcccccccCceeeCCCCcce
Q 003368 483 M------AENFFRGSIPSSLVSLKDLREIDLSQNNLSGKIPISLERLPLEYLNLSFNDLE 536 (825)
Q Consensus 483 l------~~N~l~g~~p~~~~~l~~L~~Ldls~N~l~~~~p~~~~~l~L~~l~ls~N~l~ 536 (825)
| ++|++.+.+|..+..+++|+.|||++|++ +.+|..+. -.|++|++++|++.
T Consensus 543 Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 543 IRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNPNI 600 (636)
T ss_dssp CCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCTTC
T ss_pred CCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECcCCCCc
Confidence 5 45566666666666666666666666666 45565543 24666666666655
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.2e-54 Score=526.34 Aligned_cols=490 Identities=18% Similarity=0.166 Sum_probs=350.1
Q ss_pred ceeeceeecCCCCcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccC-CccccCCCCCCEEECCCCcCCCCCCc
Q 003368 20 CDWEGITCSPRHRRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKI-PGEIGRLFRLEALYLSHNSLVGEIPG 98 (825)
Q Consensus 20 C~~~g~~c~~~~~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~ 98 (825)
|.|..|.+ ...+++.|||++|.+.+..|.+|.++++|++|||++|.+.+.+ |.+|+++++|++|+|++|.|++..|+
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 34555555 3478999999999999999999999999999999999665555 88999999999999999999999999
Q ss_pred CCCCCCCCCEEEcCCCCCCCCCChh--hhcccccceeeccccccccccC-ccCCCCCCCCEEEcccCcCcccCCcccccc
Q 003368 99 NLSYCSRLIGLYLGRNKLEGSIPSE--FVSLYNLKELAIQENNLTGGIP-HFLGNITSLEAISLAYNSLGGNIPSSLGQL 175 (825)
Q Consensus 99 ~~~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 175 (825)
.|.++++|++|+|++|++++..|.. |.++++|++|+|++|.+++..+ ..|+++++|++|+|++|++++..|..|..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 9999999999999999999877665 9999999999999999998765 579999999999999999999999999988
Q ss_pred --cccceecCcCc-----CCccccCCCC------CceeecCCccccccCCchhhhc------------------------
Q 003368 176 --KELKSLGLGGT-----IPPSIYNLSL------LANFSVPENRLHGSLPPSLGLT------------------------ 218 (825)
Q Consensus 176 --~~L~~L~L~~~-----~p~~i~~l~~------l~~l~l~~N~l~~~lp~~~~~~------------------------ 218 (825)
++|+.|+++++ .|..+..+.. |+.|++++|.+++.+|..+...
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 89999998753 4555555554 9999999999988777665422
Q ss_pred -------------CCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccCccccCcCCCCCCcEEEcccccCCCCCC
Q 003368 219 -------------LSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLAYLNVAINNLGSGES 285 (825)
Q Consensus 219 -------------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~ 285 (825)
.++|+.|+|++|.+.+..|..|..+++|+.|+|++|++.+..+..|..+++|++|+++.|.+....
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~- 330 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY- 330 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC-
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC-
Confidence 145666666666666666666666666666666666666666666666666666666666665432
Q ss_pred CccccccccccCCCCCEEEcccccccccCCCCcccccCCccccCCCCcCEEEcccCcccccCCccccCCCCCCEEEcccc
Q 003368 286 DEMSFIHSLANCSNLSFLNLVANQFKGALPHSIVSGSIPSEIGKLVSLYLIEMDHNQFEGKIPEEMSRLQNLQFLNMRHN 365 (825)
Q Consensus 286 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 365 (825)
+..+..+++|+.|++++|.+++ ..+..+..+++|+.|+|++|.+++. + .+++|+.|++++|
T Consensus 331 -----~~~~~~l~~L~~L~L~~N~i~~---------~~~~~~~~l~~L~~L~Ls~N~l~~i-~----~~~~L~~L~l~~N 391 (844)
T 3j0a_A 331 -----SSNFYGLPKVAYIDLQKNHIAI---------IQDQTFKFLEKLQTLDLRDNALTTI-H----FIPSIPDIFLSGN 391 (844)
T ss_dssp -----SCSCSSCTTCCEEECCSCCCCC---------CCSSCSCSCCCCCEEEEETCCSCCC-S----SCCSCSEEEEESC
T ss_pred -----HHHhcCCCCCCEEECCCCCCCc---------cChhhhcCCCCCCEEECCCCCCCcc-c----CCCCcchhccCCC
Confidence 3345566666666666666653 2223455666666666666666532 2 2566666666666
Q ss_pred ccccccCccccCCCCCcEEEcccCccccccC-CCCCCCCccceeecCCCCCccccchhhh-cccccccccccCCCccc--
Q 003368 366 QLSGEIPSSFGNLSSLVKLILGNNNLSGVIP-SSLGNLKQLALLHLFQNDLSGAIPEEIF-NISHMSDSLNFARNHLV-- 441 (825)
Q Consensus 366 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~g~ip~~~~-~~~~l~~~l~l~~N~l~-- 441 (825)
++. .+|.. ..+++.|++++|++++... ..+.++++|+.|+|++|++++..+.... ....+ +.|++++|.++
T Consensus 392 ~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L-~~L~Ls~N~l~~~ 466 (844)
T 3j0a_A 392 KLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSL-EQLFLGENMLQLA 466 (844)
T ss_dssp CCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTC-CBCEEESCCCSSS
T ss_pred Ccc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCcc-ccccCCCCccccc
Confidence 666 34443 3456666666666664321 1234666777777777777644333222 22333 56677777765
Q ss_pred ---cCCCccccccccccEEeecCceecccCCccccCCCCCCEEEccCCcCCCCCCccccCCCCCCEEECCCCccccccCc
Q 003368 442 ---GSIPPKIGNLKVLRMFVVSSNNLSGEIPSEIGSCFYLQEIYMAENFFRGSIPSSLVSLKDLREIDLSQNNLSGKIPI 518 (825)
Q Consensus 442 ---~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~~L~~Ldls~N~l~~~~p~ 518 (825)
+..|..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..+. ++|+.|||++|++++.+|.
T Consensus 467 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~ 544 (844)
T 3j0a_A 467 WETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPD 544 (844)
T ss_dssp CCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSC
T ss_pred cccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChh
Confidence 33445566677777777777777766666677777777777777777755555444 6677777777777776666
Q ss_pred ccccccCceeeCCCCcceecCC
Q 003368 519 SLERLPLEYLNLSFNDLEGQVP 540 (825)
Q Consensus 519 ~~~~l~L~~l~ls~N~l~g~~p 540 (825)
.+. .|+.+++++|++....+
T Consensus 545 ~~~--~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 545 VFV--SLSVLDITHNKFICECE 564 (844)
T ss_dssp CCS--SCCEEEEEEECCCCSSS
T ss_pred HhC--CcCEEEecCCCcccccc
Confidence 553 35667777776665444
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.7e-53 Score=502.54 Aligned_cols=502 Identities=20% Similarity=0.217 Sum_probs=393.5
Q ss_pred CcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEc
Q 003368 32 RRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYL 111 (825)
Q Consensus 32 ~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 111 (825)
.+++.|||++|.+.+..|..|+++++|++|+|++|++++..+.+|+++++|++|+|++|++++..|..|..+++|++|+|
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence 57888888888888888888888888888888888888666667888888888888888888777788888888888888
Q ss_pred CCCCCCCCCChhhhcccccceeeccccccccccCccCC--CCCCCCEEEcccCcCcccCCccccccccc-----------
Q 003368 112 GRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLG--NITSLEAISLAYNSLGGNIPSSLGQLKEL----------- 178 (825)
Q Consensus 112 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L----------- 178 (825)
++|++++..|..|.++++|++|++++|++++..+..|. .+++|+.|++++|++++..|..|..+.+|
T Consensus 129 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~ 208 (680)
T 1ziw_A 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208 (680)
T ss_dssp CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCH
T ss_pred CCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccC
Confidence 88888888888888888888888888888877766554 45788888888888888878777766544
Q ss_pred ----------------ceecCcCc-----CCccccCCCC--CceeecCCccccccCCchhhhcCCCCcEEEcccccCCCC
Q 003368 179 ----------------KSLGLGGT-----IPPSIYNLSL--LANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGS 235 (825)
Q Consensus 179 ----------------~~L~L~~~-----~p~~i~~l~~--l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~ 235 (825)
+.|+++++ .|..+..++. |+.|++++|++++..|..+. .+++|++|+|++|.+++.
T Consensus 209 ~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~ 287 (680)
T 1ziw_A 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQHL 287 (680)
T ss_dssp HHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSCCBSEE
T ss_pred hhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccccc-CcccccEeeCCCCccCcc
Confidence 44444432 3455555554 88888888888765555554 778888888888888877
Q ss_pred CCccccCCCCccEEEeecccccCc-----cc----cCcCCCCCCcEEEcccccCCCCCCCccccccccccCCCCCEEEcc
Q 003368 236 FPLAFSNASNLQSLEILGNNFFGK-----LS----VNFGDMKSLAYLNVAINNLGSGESDEMSFIHSLANCSNLSFLNLV 306 (825)
Q Consensus 236 ~p~~~~~l~~L~~L~L~~N~l~~~-----~~----~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~ 306 (825)
.|.+|..+++|+.|++++|...+. +| ..|..+++|++|+++.|.+.... +..+.++++|++|+++
T Consensus 288 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~Ls 361 (680)
T 1ziw_A 288 FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK------SNMFTGLINLKYLSLS 361 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCC------TTTTTTCTTCCEEECT
T ss_pred ChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCC------hhHhccccCCcEEECC
Confidence 777777777777777776544321 12 25666677777777777666543 2234455555555555
Q ss_pred cccccccC-C------------------CCcccccCCccccCCCCcCEEEcccCcccccCC-ccccCCCCCCEEEccccc
Q 003368 307 ANQFKGAL-P------------------HSIVSGSIPSEIGKLVSLYLIEMDHNQFEGKIP-EEMSRLQNLQFLNMRHNQ 366 (825)
Q Consensus 307 ~N~l~~~~-~------------------~~~~~~~ip~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~ 366 (825)
+|.+++.. + ...+.+..|..+..+++|+.|++++|++++.+| ..|.++++|++|++++|+
T Consensus 362 ~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441 (680)
T ss_dssp TCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred CCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence 55432110 0 001122456778899999999999999998776 689999999999999999
Q ss_pred cccccCccccCCCCCcEEEcccCccc--cccCCCCCCCCccceeecCCCCCccccchhhhcccccccccccCCCccccCC
Q 003368 367 LSGEIPSSFGNLSSLVKLILGNNNLS--GVIPSSLGNLKQLALLHLFQNDLSGAIPEEIFNISHMSDSLNFARNHLVGSI 444 (825)
Q Consensus 367 l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~g~ip~~~~~~~~l~~~l~l~~N~l~~~~ 444 (825)
+.+..+..|..+++|++|++++|.+. +.+|..|+.+++|+.|++++|++++..|..+..+..+ +.|++++|++++..
T Consensus 442 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~~L~Ls~N~l~~~~ 520 (680)
T 1ziw_A 442 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL-EILDLQHNNLARLW 520 (680)
T ss_dssp EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCGGGG
T ss_pred cceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccccc-CEEeCCCCCccccc
Confidence 99999999999999999999999987 6789999999999999999999996555556677776 79999999998642
Q ss_pred --------CccccccccccEEeecCceecccCCccccCCCCCCEEEccCCcCCCCCCccccCCCCCCEEECCCCcccccc
Q 003368 445 --------PPKIGNLKVLRMFVVSSNNLSGEIPSEIGSCFYLQEIYMAENFFRGSIPSSLVSLKDLREIDLSQNNLSGKI 516 (825)
Q Consensus 445 --------p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~~L~~Ldls~N~l~~~~ 516 (825)
+..++++++|+.|++++|+++...+..|+.+++|+.|+|++|++++..+..|..+++|+.|++++|++++..
T Consensus 521 ~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 600 (680)
T 1ziw_A 521 KHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600 (680)
T ss_dssp STTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred hhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence 234789999999999999999444456999999999999999999777777899999999999999999888
Q ss_pred Ccccc-cc-cCceeeCCCCcceecCCC
Q 003368 517 PISLE-RL-PLEYLNLSFNDLEGQVPT 541 (825)
Q Consensus 517 p~~~~-~l-~L~~l~ls~N~l~g~~p~ 541 (825)
|..+. .+ .|+.+++++|++....+.
T Consensus 601 ~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 601 KKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp HHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred hhHhcccccccCEEEccCCCcccCCcc
Confidence 87776 45 699999999999877653
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7.6e-54 Score=504.31 Aligned_cols=492 Identities=18% Similarity=0.179 Sum_probs=429.7
Q ss_pred EEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCC
Q 003368 36 VLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNK 115 (825)
Q Consensus 36 ~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 115 (825)
.+|.+++++. .+|..+. ++|++|+|++|++++..+.+|.++++|++|+|++|+|++..|..|.++++|++|+|++|+
T Consensus 15 ~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 15 TYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp EEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred ceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc
Confidence 4677778875 5666554 889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcc-cCCcccccccccceecCcCc-----CCc
Q 003368 116 LEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGG-NIPSSLGQLKELKSLGLGGT-----IPP 189 (825)
Q Consensus 116 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~~-----~p~ 189 (825)
+++..|.+|+++++|++|+|++|++++..|..|+++++|++|+|++|++++ .+|..|+++++|++|+++++ .|.
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh
Confidence 999889999999999999999999998888999999999999999999986 57999999999999999875 245
Q ss_pred cccCCCCCc----eeecCCccccccCCchhhhcCCCCcEEEcccccCC-CCCCccccCCCCccEEEe-------------
Q 003368 190 SIYNLSLLA----NFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFS-GSFPLAFSNASNLQSLEI------------- 251 (825)
Q Consensus 190 ~i~~l~~l~----~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L------------- 251 (825)
.+..+..++ .+++++|.++ .+|+..+ ...+|+.|++++|.++ +..|..+.++++|+.+++
T Consensus 172 ~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~-~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~ 249 (606)
T 3vq2_A 172 DLQFLRENPQVNLSLDMSLNPID-FIQDQAF-QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249 (606)
T ss_dssp TTHHHHHCTTCCCEEECTTCCCC-EECTTTT-TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred hhhhhhccccccceeeccCCCcc-eeCcccc-cCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccc
Confidence 566666554 7999999998 5666666 4458999999999987 345666777777777666
Q ss_pred --------------------ecccccCccccCcCCCCCCcEEEcccccCCCCCCCccccccccccCCCCCEEEccccccc
Q 003368 252 --------------------LGNNFFGKLSVNFGDMKSLAYLNVAINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFK 311 (825)
Q Consensus 252 --------------------~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 311 (825)
..|.+.+.++. +..+++|+.|++++|.+...+ .+..+++|+.|++++|.+.
T Consensus 250 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~--------~l~~~~~L~~L~l~~n~l~ 320 (606)
T 3vq2_A 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE--------DVPKHFKWQSLSIIRCQLK 320 (606)
T ss_dssp CCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC--------CCCTTCCCSEEEEESCCCS
T ss_pred cChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhhh--------hccccccCCEEEcccccCc
Confidence 55666677766 889999999999999986542 5678899999999999994
Q ss_pred ccCCCCcccccCCccccCCCCcCEEEcccCcccccCCccccCCCCCCEEEccccccccc--cCccccCCCCCcEEEcccC
Q 003368 312 GALPHSIVSGSIPSEIGKLVSLYLIEMDHNQFEGKIPEEMSRLQNLQFLNMRHNQLSGE--IPSSFGNLSSLVKLILGNN 389 (825)
Q Consensus 312 ~~~~~~~~~~~ip~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~N 389 (825)
.+| .+ .+++|+.|++++|+..+.+ .+..+++|++|++++|++++. +|..+..+++|++|++++|
T Consensus 321 ----------~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n 386 (606)
T 3vq2_A 321 ----------QFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386 (606)
T ss_dssp ----------SCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC
T ss_pred ----------ccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC
Confidence 677 45 8999999999999766555 678999999999999999876 4888999999999999999
Q ss_pred ccccccCCCCCCCCccceeecCCCCCccccc-hhhhcccccccccccCCCccccCCCccccccccccEEeecCceecc-c
Q 003368 390 NLSGVIPSSLGNLKQLALLHLFQNDLSGAIP-EEIFNISHMSDSLNFARNHLVGSIPPKIGNLKVLRMFVVSSNNLSG-E 467 (825)
Q Consensus 390 ~l~~~~p~~~~~l~~L~~L~L~~N~l~g~ip-~~~~~~~~l~~~l~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g-~ 467 (825)
.+++ +|..+..+++|+.|++++|++++..| ..+..+..+ +.|++++|++.+..|..++.+++|+.|++++|++++ .
T Consensus 387 ~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 464 (606)
T 3vq2_A 387 GAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL-LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT 464 (606)
T ss_dssp SEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC-CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred cccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccC-CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcc
Confidence 9985 66899999999999999999998877 566677776 799999999999999999999999999999999998 4
Q ss_pred CCccccCCCCCCEEEccCCcCCCCCCccccCCCCCCEEECCCCccccccCcccccc-cCceeeCCCCcceecCCCCCccC
Q 003368 468 IPSEIGSCFYLQEIYMAENFFRGSIPSSLVSLKDLREIDLSQNNLSGKIPISLERL-PLEYLNLSFNDLEGQVPTKGIFA 546 (825)
Q Consensus 468 ~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~~L~~Ldls~N~l~~~~p~~~~~l-~L~~l~ls~N~l~g~~p~~~~~~ 546 (825)
+|..++.+++|+.|++++|++++..|..+..+++|+.|++++|++++.+|..+..+ .|++|++++|+++..++....++
T Consensus 465 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~ 544 (606)
T 3vq2_A 465 LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFP 544 (606)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSC
T ss_pred hHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhc
Confidence 89999999999999999999999999999999999999999999999999999988 69999999999995444333343
Q ss_pred -ccccccccCCC
Q 003368 547 -NASAISVSGNS 557 (825)
Q Consensus 547 -~~~~~~~~~n~ 557 (825)
+.....+.+|+
T Consensus 545 ~~L~~l~l~~N~ 556 (606)
T 3vq2_A 545 KSLAFFNLTNNS 556 (606)
T ss_dssp TTCCEEECCSCC
T ss_pred ccCcEEEccCCC
Confidence 46778888887
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.7e-54 Score=513.49 Aligned_cols=470 Identities=20% Similarity=0.266 Sum_probs=272.1
Q ss_pred CCCCCC-----CC--cee------------eceeecCCCCcEEEEECCCCCCccccCcCCCCCCCCCEEEc-CCCccccc
Q 003368 12 SWNDSH-----HF--CDW------------EGITCSPRHRRVTVLDLKSKGLIGSLSPQIGNLSFLREIHL-SNNTIQGK 71 (825)
Q Consensus 12 ~w~~~~-----~~--C~~------------~g~~c~~~~~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~L-s~N~l~~~ 71 (825)
+|+.+. ++ |.| .||+|+. .++|+.|+|+++++.|.+|++|++|++|++||| ++|.++|.
T Consensus 285 ~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~ 363 (876)
T 4ecn_A 285 NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363 (876)
T ss_dssp GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHT
T ss_pred CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCcCchHHhccccceEeeeccccccccc
Confidence 786543 55 999 9999987 689999999999999999999999999999999 99999877
Q ss_pred CCccccCCCCCCEEECC--------------------CCcCC-----------CCCCcCCCCCCCCCEEEcCC--CCCCC
Q 003368 72 IPGEIGRLFRLEALYLS--------------------HNSLV-----------GEIPGNLSYCSRLIGLYLGR--NKLEG 118 (825)
Q Consensus 72 ~p~~~~~l~~L~~L~Ls--------------------~N~l~-----------~~~p~~~~~l~~L~~L~Ls~--N~l~~ 118 (825)
.|-.-... .++++ ...+. ...+........++.+.++. |++++
T Consensus 364 ~~~~~~~~----~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~ 439 (876)
T 4ecn_A 364 RLFGDEEL----TPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF 439 (876)
T ss_dssp TCBTTBCC----CSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE
T ss_pred cccccccc----ccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccc
Confidence 44321111 00000 00000 00000011112222222322 44444
Q ss_pred CCChhhhcccccceeecccccccc-----------------ccCccCC--CCCCCCEEEcccCcCcccCCcccccccccc
Q 003368 119 SIPSEFVSLYNLKELAIQENNLTG-----------------GIPHFLG--NITSLEAISLAYNSLGGNIPSSLGQLKELK 179 (825)
Q Consensus 119 ~~p~~~~~l~~L~~L~L~~N~l~~-----------------~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 179 (825)
+|..|+++++|++|+|++|+|++ .+|..++ ++++|++|+|++|++.+.+|..|+++++|+
T Consensus 440 -IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 -ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp -ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred -hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 44444444444444444444444 2555544 555555555555555555555555555555
Q ss_pred eecCcCcCCccccCCCCCceeecCCcc-ccc-cCCchhhhcC-------CCCcEEEcccccCCCCCCc--cccCCCCccE
Q 003368 180 SLGLGGTIPPSIYNLSLLANFSVPENR-LHG-SLPPSLGLTL-------SNLQLFQISNNFFSGSFPL--AFSNASNLQS 248 (825)
Q Consensus 180 ~L~L~~~~p~~i~~l~~l~~l~l~~N~-l~~-~lp~~~~~~l-------~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~ 248 (825)
.| ++++|+ ++| .+|..++ .+ ++|+.|+|++|.++ .+|. .|.++++|+.
T Consensus 519 ~L-------------------~Ls~N~~lsg~~iP~~i~-~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~ 577 (876)
T 4ecn_A 519 SL-------------------NIACNRGISAAQLKADWT-RLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGL 577 (876)
T ss_dssp EE-------------------ECTTCTTSCHHHHHHHHH-HHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCE
T ss_pred EE-------------------ECcCCCCcccccchHHHH-hhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCE
Confidence 55 344444 444 4444333 22 25555555555555 4444 5555555555
Q ss_pred EEeecccccCccccCcCCCCCCcEEEcccccCCCCCCCccccccccccCCC-CCEEEcccccccccCCCCcccccCCccc
Q 003368 249 LEILGNNFFGKLSVNFGDMKSLAYLNVAINNLGSGESDEMSFIHSLANCSN-LSFLNLVANQFKGALPHSIVSGSIPSEI 327 (825)
Q Consensus 249 L~L~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~~~ip~~l 327 (825)
|+|++|++. .+| .|+.+++|+.|++++|.+.. +|..+.++++ |+.|+|++|.++ .+|..+
T Consensus 578 L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~-------lp~~l~~l~~~L~~L~Ls~N~L~----------~lp~~~ 638 (876)
T 4ecn_A 578 LDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEE-------IPEDFCAFTDQVEGLGFSHNKLK----------YIPNIF 638 (876)
T ss_dssp EECTTSCCC-BCC-CCCTTSEESEEECCSSCCSC-------CCTTSCEECTTCCEEECCSSCCC----------SCCSCC
T ss_pred EECCCCCcc-cch-hhcCCCcceEEECcCCcccc-------chHHHhhccccCCEEECcCCCCC----------cCchhh
Confidence 555555554 444 55555555555555555542 1334455555 666666666655 344444
Q ss_pred cCCCC--cCEEEcccCcccccCCcc---cc--CCCCCCEEEccccccccccCccc-cCCCCCcEEEcccCccccccCCCC
Q 003368 328 GKLVS--LYLIEMDHNQFEGKIPEE---MS--RLQNLQFLNMRHNQLSGEIPSSF-GNLSSLVKLILGNNNLSGVIPSSL 399 (825)
Q Consensus 328 ~~l~~--L~~L~L~~N~l~~~~p~~---~~--~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~ 399 (825)
..+.. |+.|+|++|++.+.+|.. +. .+++|++|+|++|++. .+|..+ ..+++|+.|+|++|+++ .+|..+
T Consensus 639 ~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 716 (876)
T 4ecn_A 639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENS 716 (876)
T ss_dssp CTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTS
T ss_pred hccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHH
Confidence 44432 666666666666554432 12 2336666666666666 344433 35666666666666666 334333
Q ss_pred CC--------CCccceeecCCCCCccccchhhh--cccccccccccCCCccccCCCccccccccccEEeecC------ce
Q 003368 400 GN--------LKQLALLHLFQNDLSGAIPEEIF--NISHMSDSLNFARNHLVGSIPPKIGNLKVLRMFVVSS------NN 463 (825)
Q Consensus 400 ~~--------l~~L~~L~L~~N~l~g~ip~~~~--~~~~l~~~l~l~~N~l~~~~p~~~~~l~~L~~L~ls~------N~ 463 (825)
.. +++|+.|+|++|+++ .+|..++ .+..+ +.|++++|++++ +|..++.+++|+.|+|++ |+
T Consensus 717 ~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L-~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~ 793 (876)
T 4ecn_A 717 LKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL-SNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNR 793 (876)
T ss_dssp SSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC-CEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCB
T ss_pred hccccccccccCCccEEECCCCCCc-cchHHhhhccCCCc-CEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccccc
Confidence 22 236777777777776 6666665 55555 566666666665 666777777777777765 77
Q ss_pred ecccCCccccCCCCCCEEEccCCcCCCCCCccccCCCCCCEEECCCCccccccCcccccc-cCceeeCCCCcc
Q 003368 464 LSGEIPSEIGSCFYLQEIYMAENFFRGSIPSSLVSLKDLREIDLSQNNLSGKIPISLERL-PLEYLNLSFNDL 535 (825)
Q Consensus 464 l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~~L~~Ldls~N~l~~~~p~~~~~l-~L~~l~ls~N~l 535 (825)
+.+.+|..++.+++|+.|+|++|++ +.+|..+. ++|+.|||++|++...-+..+... .+..+.+++|++
T Consensus 794 l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 794 ILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863 (876)
T ss_dssp CCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred ccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCc
Confidence 7777777777777788888888877 57777665 577888888887775555444333 345555555544
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.5e-52 Score=505.13 Aligned_cols=492 Identities=23% Similarity=0.274 Sum_probs=404.2
Q ss_pred EEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCC-CcCCCCCCCCCEEEcCCC
Q 003368 36 VLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEI-PGNLSYCSRLIGLYLGRN 114 (825)
Q Consensus 36 ~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N 114 (825)
..|.+++++.. +|. ..++|++|||++|+|++..|.+|.++++|++|||++|.+.+.+ |..|.++++|++|+|++|
T Consensus 8 ~~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 8 IAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEEccCCCCCC-CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 45666777764 444 4689999999999999999999999999999999999665555 899999999999999999
Q ss_pred CCCCCCChhhhcccccceeeccccccccccCcc--CCCCCCCCEEEcccCcCcccCC-cccccccccceecCcCc-----
Q 003368 115 KLEGSIPSEFVSLYNLKELAIQENNLTGGIPHF--LGNITSLEAISLAYNSLGGNIP-SSLGQLKELKSLGLGGT----- 186 (825)
Q Consensus 115 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~~----- 186 (825)
+|++..|.+|.++++|++|+|++|.+++..|.. |+++++|++|+|++|++++..+ ..|+++++|++|+|+++
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 999999999999999999999999999877665 9999999999999999998765 67999999999999875
Q ss_pred CCccccCC--CCCceeecCCccccccCCchhhhcCC------CCcEEEcccccCCCCCCccccCC---------------
Q 003368 187 IPPSIYNL--SLLANFSVPENRLHGSLPPSLGLTLS------NLQLFQISNNFFSGSFPLAFSNA--------------- 243 (825)
Q Consensus 187 ~p~~i~~l--~~l~~l~l~~N~l~~~lp~~~~~~l~------~L~~L~Ls~N~l~~~~p~~~~~l--------------- 243 (825)
.+..+..+ +.|+.|+++.|.+.+..|..+. .++ +|+.|+|++|.+++..|..+...
T Consensus 164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWG-KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC-SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred CHHHcccccCCccceEECCCCccccccccchh-hcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 34566666 8899999999999988877654 344 49999999999887776655432
Q ss_pred -----------------------CCccEEEeecccccCccccCcCCCCCCcEEEcccccCCCCCCCccccccccccCCCC
Q 003368 244 -----------------------SNLQSLEILGNNFFGKLSVNFGDMKSLAYLNVAINNLGSGESDEMSFIHSLANCSNL 300 (825)
Q Consensus 244 -----------------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~l~~L 300 (825)
++|+.|+|++|.+.+..+..|..+++|+.|+++.|.+.... +..|.++++|
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~------~~~~~~l~~L 316 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA------DEAFYGLDNL 316 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC------TTTTTTCSSC
T ss_pred ccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCC------hHHhcCCCCC
Confidence 57888888888888887888888888888888888876543 3456778888
Q ss_pred CEEEcccccccccCCCCcccccCCccccCCCCcCEEEcccCcccccCCccccCCCCCCEEEccccccccccCccccCCCC
Q 003368 301 SFLNLVANQFKGALPHSIVSGSIPSEIGKLVSLYLIEMDHNQFEGKIPEEMSRLQNLQFLNMRHNQLSGEIPSSFGNLSS 380 (825)
Q Consensus 301 ~~L~L~~N~l~~~~~~~~~~~~ip~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 380 (825)
++|+|++|++++ ..|..+..+++|+.|++++|++.+..+..|..+++|++|+|++|.+++ ++ .+++
T Consensus 317 ~~L~Ls~N~l~~---------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~----~~~~ 382 (844)
T 3j0a_A 317 QVLNLSYNLLGE---------LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IH----FIPS 382 (844)
T ss_dssp CEEEEESCCCSC---------CCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CS----SCCS
T ss_pred CEEECCCCCCCc---------cCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-cc----CCCC
Confidence 888888888874 445677788888888888888887777778888888888888888873 22 2677
Q ss_pred CcEEEcccCccccccCCCCCCCCccceeecCCCCCcccc-chhhhcccccccccccCCCccccCCCc-cccccccccEEe
Q 003368 381 LVKLILGNNNLSGVIPSSLGNLKQLALLHLFQNDLSGAI-PEEIFNISHMSDSLNFARNHLVGSIPP-KIGNLKVLRMFV 458 (825)
Q Consensus 381 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~i-p~~~~~~~~l~~~l~l~~N~l~~~~p~-~~~~l~~L~~L~ 458 (825)
|+.|++++|+++ .+|.. ..+++.|++++|++++.- +..+..+..+ +.|++++|++++..+. .+..+++|+.|+
T Consensus 383 L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~ 457 (844)
T 3j0a_A 383 IPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHL-QILILNQNRFSSCSGDQTPSENPSLEQLF 457 (844)
T ss_dssp CSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTC-CEEEEESCCCCCCCSSSSSCSCTTCCBCE
T ss_pred cchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCcc-ceeeCCCCcccccccccccccCCcccccc
Confidence 888888888887 44543 457888899999988531 2233456666 7899999999876544 456789999999
Q ss_pred ecCceec-----ccCCccccCCCCCCEEEccCCcCCCCCCccccCCCCCCEEECCCCccccccCcccccccCceeeCCCC
Q 003368 459 VSSNNLS-----GEIPSEIGSCFYLQEIYMAENFFRGSIPSSLVSLKDLREIDLSQNNLSGKIPISLERLPLEYLNLSFN 533 (825)
Q Consensus 459 ls~N~l~-----g~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~~L~~Ldls~N~l~~~~p~~~~~l~L~~l~ls~N 533 (825)
+++|.++ +..|..|..+++|+.|+|++|++++..|..+..+++|+.|||++|+|++..|..+. ..|+.|++++|
T Consensus 458 Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N 536 (844)
T 3j0a_A 458 LGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRN 536 (844)
T ss_dssp EESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEE
T ss_pred CCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCC
Confidence 9999997 55567789999999999999999999999999999999999999999987776665 46999999999
Q ss_pred cceecCCCCCccCccccccccCCCCCCC
Q 003368 534 DLEGQVPTKGIFANASAISVSGNSNRLC 561 (825)
Q Consensus 534 ~l~g~~p~~~~~~~~~~~~~~~n~~~lc 561 (825)
++++.+|. .|..+....+.+|+ ..|
T Consensus 537 ~l~~~~~~--~~~~L~~l~l~~Np-~~C 561 (844)
T 3j0a_A 537 QLLAPNPD--VFVSLSVLDITHNK-FIC 561 (844)
T ss_dssp CCCCCCSC--CCSSCCEEEEEEEC-CCC
T ss_pred cCCCCChh--HhCCcCEEEecCCC-ccc
Confidence 99998885 36677888899998 444
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.7e-51 Score=478.98 Aligned_cols=501 Identities=20% Similarity=0.192 Sum_probs=386.0
Q ss_pred CCceeeceeecCC--CCcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCC
Q 003368 18 HFCDWEGITCSPR--HRRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGE 95 (825)
Q Consensus 18 ~~C~~~g~~c~~~--~~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 95 (825)
-.|.+.+++-.|. ..+++.|||++|++.+..+.+|..+++|++|+|++|++++..|.+|+++++|++|+|++|++++.
T Consensus 12 ~~c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~ 91 (570)
T 2z63_A 12 YQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91 (570)
T ss_dssp EECCSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred EEeCCCCccccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCcc
Confidence 3566667766664 36799999999999988888999999999999999999988889999999999999999999988
Q ss_pred CCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeecccccccc-ccCccCCCCCCCCEEEcccCcCcccCCccccc
Q 003368 96 IPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQENNLTG-GIPHFLGNITSLEAISLAYNSLGGNIPSSLGQ 174 (825)
Q Consensus 96 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 174 (825)
.|..|.++++|++|++++|++++..+..|+++++|++|++++|.+++ .+|..|+++++|++|++++|++++..|..|+.
T Consensus 92 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 171 (570)
T 2z63_A 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171 (570)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHH
T ss_pred CHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccc
Confidence 88999999999999999999997776689999999999999999987 36899999999999999999999888888999
Q ss_pred cccc----ceecCcCc----CCccccCCCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCC------CCCCccc
Q 003368 175 LKEL----KSLGLGGT----IPPSIYNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFS------GSFPLAF 240 (825)
Q Consensus 175 l~~L----~~L~L~~~----~p~~i~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~------~~~p~~~ 240 (825)
+++| +.|+++++ +++.......|+.+++++|......-+.....+++++.+.+.-+.+. ......|
T Consensus 172 l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~ 251 (570)
T 2z63_A 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251 (570)
T ss_dssp HHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTT
T ss_pred hhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhh
Confidence 8888 67776653 22222223356777776664332111122224555555444332221 1122233
Q ss_pred cCCCC--ccEEEeecc-cccCccccCcCCCCCCcEEEcccccCCCCCCCccccccccccCCCCCEEEcccccccccCCCC
Q 003368 241 SNASN--LQSLEILGN-NFFGKLSVNFGDMKSLAYLNVAINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALPHS 317 (825)
Q Consensus 241 ~~l~~--L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 317 (825)
..+++ ++.+++++| .+.+..+..+..+++|+.|+++.|.+... |..+..+ +|+.|++++|.++
T Consensus 252 ~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-------~~~~~~~-~L~~L~l~~n~~~------ 317 (570)
T 2z63_A 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV-------KDFSYNF-GWQHLELVNCKFG------ 317 (570)
T ss_dssp GGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSC-------CBCCSCC-CCSEEEEESCBCS------
T ss_pred ccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhh-------hhhhccC-CccEEeeccCccc------
Confidence 33332 456666666 66777777777888888888888777643 4445566 7888888888776
Q ss_pred cccccCCccccCCCCcCEEEcccCcccccCCccccCCCCCCEEEcccccccccc--CccccCCCCCcEEEcccCcccccc
Q 003368 318 IVSGSIPSEIGKLVSLYLIEMDHNQFEGKIPEEMSRLQNLQFLNMRHNQLSGEI--PSSFGNLSSLVKLILGNNNLSGVI 395 (825)
Q Consensus 318 ~~~~~ip~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~ 395 (825)
.+|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|++.+.. |..+..+++|++|++++|++.+..
T Consensus 318 ----~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 389 (570)
T 2z63_A 318 ----QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 389 (570)
T ss_dssp ----SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEE
T ss_pred ----ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccc
Confidence 4554 4667788888888887766654 67788888888888887543 667777888888888888887655
Q ss_pred CCCCCCCCccceeecCCCCCccccch-hhhcccccccccccCCCccccCCCccccccccccEEeecCceec-ccCCcccc
Q 003368 396 PSSLGNLKQLALLHLFQNDLSGAIPE-EIFNISHMSDSLNFARNHLVGSIPPKIGNLKVLRMFVVSSNNLS-GEIPSEIG 473 (825)
Q Consensus 396 p~~~~~l~~L~~L~L~~N~l~g~ip~-~~~~~~~l~~~l~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~-g~~p~~~~ 473 (825)
+. +..+++|+.|++++|.+++..|. .+..+..+ +.|++++|.+.+..|..++.+++|+.|++++|+++ +.+|..++
T Consensus 390 ~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~ 467 (570)
T 2z63_A 390 SN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467 (570)
T ss_dssp EE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTC-CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred cc-ccccCCCCEEEccCCccccccchhhhhcCCCC-CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhh
Confidence 54 77888888888888888766553 44455555 67888888888888888888999999999999987 67888899
Q ss_pred CCCCCCEEEccCCcCCCCCCccccCCCCCCEEECCCCccccccCcccccc-cCceeeCCCCcceecCCCC
Q 003368 474 SCFYLQEIYMAENFFRGSIPSSLVSLKDLREIDLSQNNLSGKIPISLERL-PLEYLNLSFNDLEGQVPTK 542 (825)
Q Consensus 474 ~l~~L~~L~l~~N~l~g~~p~~~~~l~~L~~Ldls~N~l~~~~p~~~~~l-~L~~l~ls~N~l~g~~p~~ 542 (825)
.+++|++|++++|++++..|..+..+++|++|++++|++++.+|..+..+ .|+.+++++|++++..|..
T Consensus 468 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred cccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 99999999999999998888889999999999999999998877777777 5899999999999888764
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.8e-51 Score=478.11 Aligned_cols=492 Identities=19% Similarity=0.216 Sum_probs=343.1
Q ss_pred CceeeceeecCCCCcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCc
Q 003368 19 FCDWEGITCSPRHRRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPG 98 (825)
Q Consensus 19 ~C~~~g~~c~~~~~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 98 (825)
.|.|.|+ |+. +++++. .+|+.+. ++|++|+|++|++++..|.+|+++++|++|+|++|+|++..|+
T Consensus 3 ~C~~~~~-c~~----------~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-CDG----------RSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-EEC----------TTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-EEC----------CCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 5888887 754 334443 3444443 5677777777777766666677777777777777777766666
Q ss_pred CCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeeccccccccc-cCccCCCCCCCCEEEcccCcCcccC-Cccccccc
Q 003368 99 NLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQENNLTGG-IPHFLGNITSLEAISLAYNSLGGNI-PSSLGQLK 176 (825)
Q Consensus 99 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~ 176 (825)
.|..+++|++|+|++|++++..|..|+++++|++|+|++|++++. .|..|+++++|++|++++|++.+.+ +..|.+++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 677777777777777777766666677777777777777777652 4556667777777777777633333 35666777
Q ss_pred ccceecCcC-----cCCccccCCCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCC--C-ccccCCCCccE
Q 003368 177 ELKSLGLGG-----TIPPSIYNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSF--P-LAFSNASNLQS 248 (825)
Q Consensus 177 ~L~~L~L~~-----~~p~~i~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~--p-~~~~~l~~L~~ 248 (825)
+|++|++++ ..|..+..++.|+.|+++.|.+. .+|..+...+++|++|++++|++++.. | .....+++|+.
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~ 227 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCE
T ss_pred ccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccc
Confidence 777776653 24556666677777778777775 566666556888888888888888652 2 22345778888
Q ss_pred EEeecccccCccc----cCcCCCCCCcEEEcccccCCCCCCCccccccccccCCCCCEEEcccccccccCCCCcccccCC
Q 003368 249 LEILGNNFFGKLS----VNFGDMKSLAYLNVAINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALPHSIVSGSIP 324 (825)
Q Consensus 249 L~L~~N~l~~~~~----~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip 324 (825)
|++++|.+.+..+ ..+..+++|+.++++.|.+.............+..+++|+.|++.++.+.... ....++
T Consensus 228 L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~----~~~~l~ 303 (549)
T 2z81_A 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY----LFYDLS 303 (549)
T ss_dssp EEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGG----GSCCCC
T ss_pred eeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhh----hcccch
Confidence 8888888765433 33456778888888887765543221111234556778888888887665311 111233
Q ss_pred ccccCCCCcCEEEcccCcccccCCccc-cCCCCCCEEEccccccccccC---ccccCCCCCcEEEcccCccccccC--CC
Q 003368 325 SEIGKLVSLYLIEMDHNQFEGKIPEEM-SRLQNLQFLNMRHNQLSGEIP---SSFGNLSSLVKLILGNNNLSGVIP--SS 398 (825)
Q Consensus 325 ~~l~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~p--~~ 398 (825)
..+....+|+.|++++|++. .+|..+ ..+++|++|+|++|++.+.+| ..++.+++|++|+|++|++++..+ ..
T Consensus 304 ~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 382 (549)
T 2z81_A 304 TVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI 382 (549)
T ss_dssp HHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHH
T ss_pred hhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhh
Confidence 33344567888888888887 566655 578888888888888887664 346778888888888888876532 45
Q ss_pred CCCCCccceeecCCCCCccccchhhhcccccccccccCCCccccCCCccccccccccEEeecCceecccCCccccCCCCC
Q 003368 399 LGNLKQLALLHLFQNDLSGAIPEEIFNISHMSDSLNFARNHLVGSIPPKIGNLKVLRMFVVSSNNLSGEIPSEIGSCFYL 478 (825)
Q Consensus 399 ~~~l~~L~~L~L~~N~l~g~ip~~~~~~~~l~~~l~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L 478 (825)
++.+++|++|++++|+++ .+|..+..+..+ +.|++++|+++ .+|..+. ++|+.|++++|++++.+ +.+++|
T Consensus 383 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L-~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~~~~----~~l~~L 453 (549)
T 2z81_A 383 LLTLKNLTSLDISRNTFH-PMPDSCQWPEKM-RFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSFS----LFLPRL 453 (549)
T ss_dssp GGGCTTCCEEECTTCCCC-CCCSCCCCCTTC-CEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCSCCC----CCCTTC
T ss_pred hhcCCCCCEEECCCCCCc-cCChhhcccccc-cEEECCCCCcc-cccchhc--CCceEEECCCCChhhhc----ccCChh
Confidence 778888888888888888 678777766666 67888888876 3444432 57889999999988643 577889
Q ss_pred CEEEccCCcCCCCCCccccCCCCCCEEECCCCccccccCcccccc-cCceeeCCCCcceecCCC
Q 003368 479 QEIYMAENFFRGSIPSSLVSLKDLREIDLSQNNLSGKIPISLERL-PLEYLNLSFNDLEGQVPT 541 (825)
Q Consensus 479 ~~L~l~~N~l~g~~p~~~~~l~~L~~Ldls~N~l~~~~p~~~~~l-~L~~l~ls~N~l~g~~p~ 541 (825)
++|++++|+++ .+|. ...+++|++|||++|++++.+|..+..+ .|+.|++++|++.+..|.
T Consensus 454 ~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 454 QELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp CEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred cEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 99999999998 6776 4678899999999999998888878777 589999999998877763
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7.6e-51 Score=479.03 Aligned_cols=450 Identities=21% Similarity=0.300 Sum_probs=317.8
Q ss_pred CCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCC------C------CCCcCCCCCCCCCEEEcCCCCCCCCCChh
Q 003368 56 SFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLV------G------EIPGNLSYCSRLIGLYLGRNKLEGSIPSE 123 (825)
Q Consensus 56 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~------~------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 123 (825)
..++.|+|++|.++|.+|.+|++|++|++|||++|.+. + .+|... +..|+ ++++.|.+.+.+|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 47899999999999999999999999999999999873 2 222222 34566 788888888877776
Q ss_pred hhcc-cccceeecc--------------------ccccccccCccCCCCCCCCEEEcccCcCccc-CCccccccccccee
Q 003368 124 FVSL-YNLKELAIQ--------------------ENNLTGGIPHFLGNITSLEAISLAYNSLGGN-IPSSLGQLKELKSL 181 (825)
Q Consensus 124 ~~~l-~~L~~L~L~--------------------~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L 181 (825)
+..+ ..+..+++. .|+++| +|..|+++++|++|+|++|++++. ++..+..- .. -
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~-~~--~ 233 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE-NS--E 233 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT-TS--H
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccccc-cc--c
Confidence 6532 222222222 688888 888899999999999999998873 11110000 00 0
Q ss_pred cCcCcCCcccc--CCCCCceeecCCccccccCCchhhhcCCCCcEEEccccc-CCC-CCCccccCCCCccEEEeeccccc
Q 003368 182 GLGGTIPPSIY--NLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNF-FSG-SFPLAFSNASNLQSLEILGNNFF 257 (825)
Q Consensus 182 ~L~~~~p~~i~--~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~-l~~-~~p~~~~~l~~L~~L~L~~N~l~ 257 (825)
.+.+.+|+.++ +++.|+.|++++|++.|.+|..+. .+++|++|+|++|+ +++ .+|..+.++.
T Consensus 234 ~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~------------- 299 (636)
T 4eco_A 234 YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALA------------- 299 (636)
T ss_dssp HHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT-TCSSCCEEECTTCTTSCHHHHHHHHHHHH-------------
T ss_pred hhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh-cCCCCCEEECcCCCCCccccchHHHHhhh-------------
Confidence 00011222222 233333335555555555554444 45555555555554 554 4444444430
Q ss_pred CccccCcCCCCCCcEEEcccccCCCCCCCcccccc--ccccCCCCCEEEcccccccccCCCCcccccCCccccCCCCcCE
Q 003368 258 GKLSVNFGDMKSLAYLNVAINNLGSGESDEMSFIH--SLANCSNLSFLNLVANQFKGALPHSIVSGSIPSEIGKLVSLYL 335 (825)
Q Consensus 258 ~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l~~l~~L~~ 335 (825)
.+..+++|++|++++|++.. +|. .+.++++|+.|++++|+++| .+| .+..+++|+.
T Consensus 300 -----~~~~l~~L~~L~L~~n~l~~-------ip~~~~l~~l~~L~~L~L~~N~l~g---------~ip-~~~~l~~L~~ 357 (636)
T 4eco_A 300 -----DAPVGEKIQIIYIGYNNLKT-------FPVETSLQKMKKLGMLECLYNQLEG---------KLP-AFGSEIKLAS 357 (636)
T ss_dssp -----HSGGGGTCCEEECCSSCCSS-------CCCHHHHTTCTTCCEEECCSCCCEE---------ECC-CCEEEEEESE
T ss_pred -----ccccCCCCCEEECCCCcCCc-------cCchhhhccCCCCCEEeCcCCcCcc---------chh-hhCCCCCCCE
Confidence 00001444444444444432 134 56677777777777777776 666 6777788888
Q ss_pred EEcccCcccccCCccccCCCC-CCEEEccccccccccCccccCCC--CCcEEEcccCccccccCCCCC-------CCCcc
Q 003368 336 IEMDHNQFEGKIPEEMSRLQN-LQFLNMRHNQLSGEIPSSFGNLS--SLVKLILGNNNLSGVIPSSLG-------NLKQL 405 (825)
Q Consensus 336 L~L~~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p~~~~-------~l~~L 405 (825)
|++++|+++ .+|..+..+++ |++|++++|++. .+|..+..++ +|++|++++|++++.+|..+. .+++|
T Consensus 358 L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L 435 (636)
T 4eco_A 358 LNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435 (636)
T ss_dssp EECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCE
T ss_pred EECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCC
Confidence 888888887 67777888887 888888888887 6777776654 788888888888888777777 77788
Q ss_pred ceeecCCCCCccccchhhhc-ccccccccccCCCccccCCCccccc--------cccccEEeecCceecccCCcccc--C
Q 003368 406 ALLHLFQNDLSGAIPEEIFN-ISHMSDSLNFARNHLVGSIPPKIGN--------LKVLRMFVVSSNNLSGEIPSEIG--S 474 (825)
Q Consensus 406 ~~L~L~~N~l~g~ip~~~~~-~~~l~~~l~l~~N~l~~~~p~~~~~--------l~~L~~L~ls~N~l~g~~p~~~~--~ 474 (825)
+.|+|++|+++ .+|..++. +..+ +.|++++|+++ .+|..+.. +++|+.|++++|+++ .+|..+. .
T Consensus 436 ~~L~Ls~N~l~-~lp~~~~~~l~~L-~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~ 511 (636)
T 4eco_A 436 SSINLSNNQIS-KFPKELFSTGSPL-SSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATT 511 (636)
T ss_dssp EEEECCSSCCC-SCCTHHHHTTCCC-SEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTT
T ss_pred CEEECcCCccC-cCCHHHHccCCCC-CEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhcc
Confidence 88888888887 67777665 4444 67888888887 56654433 339999999999999 8999997 9
Q ss_pred CCCCCEEEccCCcCCCCCCccccCCCCCCEEEC------CCCccccccCcccccc-cCceeeCCCCcceecCCCCCccCc
Q 003368 475 CFYLQEIYMAENFFRGSIPSSLVSLKDLREIDL------SQNNLSGKIPISLERL-PLEYLNLSFNDLEGQVPTKGIFAN 547 (825)
Q Consensus 475 l~~L~~L~l~~N~l~g~~p~~~~~l~~L~~Ldl------s~N~l~~~~p~~~~~l-~L~~l~ls~N~l~g~~p~~~~~~~ 547 (825)
+++|+.|+|++|++++ +|..+..+++|+.|+| ++|++.+.+|..+..+ .|++|++++|++ +.+|.. .+.+
T Consensus 512 l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~ 588 (636)
T 4eco_A 512 LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-ITPN 588 (636)
T ss_dssp CTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCTT
T ss_pred CCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh-HhCc
Confidence 9999999999999997 9999999999999999 5688999999999888 699999999999 778865 3467
Q ss_pred cccccccCCC
Q 003368 548 ASAISVSGNS 557 (825)
Q Consensus 548 ~~~~~~~~n~ 557 (825)
+....+.+|+
T Consensus 589 L~~L~Ls~N~ 598 (636)
T 4eco_A 589 ISVLDIKDNP 598 (636)
T ss_dssp CCEEECCSCT
T ss_pred CCEEECcCCC
Confidence 8888889987
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-48 Score=453.70 Aligned_cols=473 Identities=20% Similarity=0.211 Sum_probs=378.3
Q ss_pred EECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCC
Q 003368 37 LDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKL 116 (825)
Q Consensus 37 l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 116 (825)
++.++.++. .+|..+. +++++|+|++|++++..+.+|.++++|++|||++|+|++..|..|.++++|++|+|++|++
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 88 (570)
T 2z63_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (570)
T ss_dssp EECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC
Confidence 455555554 4565543 5799999999999998899999999999999999999999999999999999999999999
Q ss_pred CCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcc-cCCcccccccccceecCcCcCCccccCCC
Q 003368 117 EGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGG-NIPSSLGQLKELKSLGLGGTIPPSIYNLS 195 (825)
Q Consensus 117 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~~~p~~i~~l~ 195 (825)
++..|.+|.++++|++|++++|++++..+..|+++++|++|+|++|++++ .+|..|+++++|++|+++
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~----------- 157 (570)
T 2z63_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS----------- 157 (570)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECT-----------
T ss_pred CccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCc-----------
Confidence 99888999999999999999999997777789999999999999999987 468889989888888554
Q ss_pred CCceeecCCccccccCCchhhhcCCCC----cEEEcccccCCCCCCccccCCCCccEEEeeccccc--------------
Q 003368 196 LLANFSVPENRLHGSLPPSLGLTLSNL----QLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFF-------------- 257 (825)
Q Consensus 196 ~l~~l~l~~N~l~~~lp~~~~~~l~~L----~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-------------- 257 (825)
+|++++..|..+. .+++| +.|++++|.+++..|..|..+ +|+.|++++|...
T Consensus 158 --------~n~l~~~~~~~~~-~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l 227 (570)
T 2z63_A 158 --------SNKIQSIYCTDLR-VLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGL 227 (570)
T ss_dssp --------TSCCCEECGGGGH-HHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTC
T ss_pred --------CCccceecHHHcc-chhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCcccc
Confidence 4444433222222 44444 455555555555555554443 4555555554221
Q ss_pred -----------------CccccCcCCCCC--CcEEEcccc-cCCCCCCCccccccccccCCCCCEEEcccccccccCCCC
Q 003368 258 -----------------GKLSVNFGDMKS--LAYLNVAIN-NLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALPHS 317 (825)
Q Consensus 258 -----------------~~~~~~~~~l~~--L~~L~ls~N-~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 317 (825)
......+..+.+ ++.++++.+ .+.. ..+..+..+++|+.|++++|.++
T Consensus 228 ~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~------~~~~~~~~l~~L~~L~l~~~~l~------ 295 (570)
T 2z63_A 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD------DIIDLFNCLTNVSSFSLVSVTIE------ 295 (570)
T ss_dssp EEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEES------CSTTTTGGGTTCSEEEEESCEEC------
T ss_pred ceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhh------hchhhhcCcCcccEEEecCccch------
Confidence 111112222222 233333333 2211 12456778899999999999998
Q ss_pred cccccCCccccCCCCcCEEEcccCcccccCCccccCCCCCCEEEccccccccccCccccCCCCCcEEEcccCcccccc--
Q 003368 318 IVSGSIPSEIGKLVSLYLIEMDHNQFEGKIPEEMSRLQNLQFLNMRHNQLSGEIPSSFGNLSSLVKLILGNNNLSGVI-- 395 (825)
Q Consensus 318 ~~~~~ip~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-- 395 (825)
.+|..+..+ +|+.|++++|.+. .+|. ..+++|++|++++|.+.+..+. ..+++|++|++++|++++..
T Consensus 296 ----~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~ 365 (570)
T 2z63_A 296 ----RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCC 365 (570)
T ss_dssp ----SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEE
T ss_pred ----hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccc
Confidence 678888888 9999999999998 6665 5789999999999999877665 78899999999999998664
Q ss_pred CCCCCCCCccceeecCCCCCccccchhhhcccccccccccCCCccccCCC-ccccccccccEEeecCceecccCCccccC
Q 003368 396 PSSLGNLKQLALLHLFQNDLSGAIPEEIFNISHMSDSLNFARNHLVGSIP-PKIGNLKVLRMFVVSSNNLSGEIPSEIGS 474 (825)
Q Consensus 396 p~~~~~l~~L~~L~L~~N~l~g~ip~~~~~~~~l~~~l~l~~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~g~~p~~~~~ 474 (825)
|..+..+++|++|++++|.+++ +|..+..+..+ +.|++++|.+.+..| ..+..+++|+.|++++|.+++.+|..+..
T Consensus 366 ~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 443 (570)
T 2z63_A 366 SQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQL-EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443 (570)
T ss_dssp EHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTC-CEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred cccccccCccCEEECCCCcccc-ccccccccCCC-CEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc
Confidence 6778899999999999999985 55557777777 789999999998777 57899999999999999999999999999
Q ss_pred CCCCCEEEccCCcCC-CCCCccccCCCCCCEEECCCCccccccCcccccc-cCceeeCCCCcceecCCCC-CccCccccc
Q 003368 475 CFYLQEIYMAENFFR-GSIPSSLVSLKDLREIDLSQNNLSGKIPISLERL-PLEYLNLSFNDLEGQVPTK-GIFANASAI 551 (825)
Q Consensus 475 l~~L~~L~l~~N~l~-g~~p~~~~~l~~L~~Ldls~N~l~~~~p~~~~~l-~L~~l~ls~N~l~g~~p~~-~~~~~~~~~ 551 (825)
+++|++|++++|.++ +.+|..+..+++|++||+++|++++..|..+..+ .|++|++++|++++.+|.. ..+.++...
T Consensus 444 l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 523 (570)
T 2z63_A 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI 523 (570)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEE
Confidence 999999999999998 6799999999999999999999999889999888 6999999999999877653 456677778
Q ss_pred cccCCC
Q 003368 552 SVSGNS 557 (825)
Q Consensus 552 ~~~~n~ 557 (825)
.+.+|+
T Consensus 524 ~l~~N~ 529 (570)
T 2z63_A 524 WLHTNP 529 (570)
T ss_dssp ECCSSC
T ss_pred EecCCc
Confidence 888887
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.1e-49 Score=453.10 Aligned_cols=455 Identities=20% Similarity=0.237 Sum_probs=376.7
Q ss_pred EEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCC
Q 003368 35 TVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRN 114 (825)
Q Consensus 35 ~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 114 (825)
+.+|+++|++. .+|..+. ++|++|+|++|++++..|.+|.++++|++|+|++|+|++..|..|.++++|++|+|++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 46899999998 5777776 89999999999999888889999999999999999999888999999999999999999
Q ss_pred CCCCCCChhhhcccccceeecccccccc-ccCccCCCCCCCCEEEcccCcCcccCCccccccccc--ceecCcCcCCccc
Q 003368 115 KLEGSIPSEFVSLYNLKELAIQENNLTG-GIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKEL--KSLGLGGTIPPSI 191 (825)
Q Consensus 115 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L--~~L~L~~~~p~~i 191 (825)
+|+. +|.. .+++|++|+|++|++++ .+|..|+++++|++|+|++|++++ ..|..+++| +.|
T Consensus 80 ~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L---------- 143 (520)
T 2z7x_B 80 KLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKV---------- 143 (520)
T ss_dssp CCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEE----------
T ss_pred ceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEE----------
Confidence 9994 5655 89999999999999987 468899999999999999999985 456666666 555
Q ss_pred cCCCCCceeecCCccc--cccCCchhhhcCC-CCcEEEcccccCCCCCC-ccccCCCCccEEEeeccc-------ccCcc
Q 003368 192 YNLSLLANFSVPENRL--HGSLPPSLGLTLS-NLQLFQISNNFFSGSFP-LAFSNASNLQSLEILGNN-------FFGKL 260 (825)
Q Consensus 192 ~~l~~l~~l~l~~N~l--~~~lp~~~~~~l~-~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~-------l~~~~ 260 (825)
++++|.+ .+..|..+. .+. +...+++++|.+.+.++ ..+.++++|+.|++++|. +.+.+
T Consensus 144 ---------~l~~n~l~~~~~~~~~l~-~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 213 (520)
T 2z7x_B 144 ---------LLVLGETYGEKEDPEGLQ-DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL 213 (520)
T ss_dssp ---------EEEECTTTTSSCCTTTTT-TCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH
T ss_pred ---------Eeeccccccccccccccc-ccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecch
Confidence 6777777 666666544 332 23467888888877665 467888999999999887 66666
Q ss_pred ccCcCCCCCCcEEEcccccCCCCCCCccccccccccCCCCCEEEcccccccccCCCCcccccCCccc-----cCCCCcCE
Q 003368 261 SVNFGDMKSLAYLNVAINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALPHSIVSGSIPSEI-----GKLVSLYL 335 (825)
Q Consensus 261 ~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l-----~~l~~L~~ 335 (825)
+ .+..+++|+.|+++.|.+...... .++.. ..+++|++|++++|+++| .+|..+ ..++.|+.
T Consensus 214 ~-~l~~l~~L~~L~l~~~~l~~~~~~--~~~~~-~~~~~L~~L~l~~n~l~~---------~~p~~~~~~~~~~l~~L~~ 280 (520)
T 2z7x_B 214 A-KLQTNPKLSNLTLNNIETTWNSFI--RILQL-VWHTTVWYFSISNVKLQG---------QLDFRDFDYSGTSLKALSI 280 (520)
T ss_dssp H-GGGGCTTCCEEEEEEEEEEHHHHH--HHHHH-HHTSSCSEEEEEEEEEES---------CCCCCCCCCCSCCCCEEEE
T ss_pred h-hhccccchhhccccccccCHHHHH--HHHHH-hhhCcccEEEeecccccC---------ccccchhhcccccCceeEe
Confidence 6 788889999999988876531100 01111 124689999999999998 566666 88999999
Q ss_pred EEcccCcccccCC-ccccCC---CCCCEEEccccccccccCccccCCCCCcEEEcccCccccccCCCCCCCCccceeecC
Q 003368 336 IEMDHNQFEGKIP-EEMSRL---QNLQFLNMRHNQLSGEIPSSFGNLSSLVKLILGNNNLSGVIPSSLGNLKQLALLHLF 411 (825)
Q Consensus 336 L~L~~N~l~~~~p-~~~~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 411 (825)
+++++|.+ .+| ..+..+ .+|+.|++++|.+.+.. .+..+++|++|++++|++++.+|..++.+++|+.|+++
T Consensus 281 l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 356 (520)
T 2z7x_B 281 HQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ 356 (520)
T ss_dssp EEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECC
T ss_pred ccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEcc
Confidence 99999999 455 556555 78999999999987432 12678999999999999999999999999999999999
Q ss_pred CCCCcc--ccchhhhcccccccccccCCCccccCCCcc-ccccccccEEeecCceecccCCccccCCCCCCEEEccCCcC
Q 003368 412 QNDLSG--AIPEEIFNISHMSDSLNFARNHLVGSIPPK-IGNLKVLRMFVVSSNNLSGEIPSEIGSCFYLQEIYMAENFF 488 (825)
Q Consensus 412 ~N~l~g--~ip~~~~~~~~l~~~l~l~~N~l~~~~p~~-~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l 488 (825)
+|++++ .+|..+..+..+ +.|++++|++++.+|.. +..+++|+.|++++|++++.+|..+. ++|+.|++++|++
T Consensus 357 ~N~l~~l~~~~~~~~~l~~L-~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l 433 (520)
T 2z7x_B 357 MNQLKELSKIAEMTTQMKSL-QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKI 433 (520)
T ss_dssp SSCCCBHHHHHHHHTTCTTC-CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCC
T ss_pred CCccCccccchHHHhhCCCC-CEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcc
Confidence 999996 677778888887 78999999999877764 88899999999999999999988776 7899999999999
Q ss_pred CCCCCccccCCCCCCEEECCCCccccccCcc-cccc-cCceeeCCCCcceecCC
Q 003368 489 RGSIPSSLVSLKDLREIDLSQNNLSGKIPIS-LERL-PLEYLNLSFNDLEGQVP 540 (825)
Q Consensus 489 ~g~~p~~~~~l~~L~~Ldls~N~l~~~~p~~-~~~l-~L~~l~ls~N~l~g~~p 540 (825)
+ .+|..+..+++|++||+++|++++ +|.. +..+ .|++|++++|++++..+
T Consensus 434 ~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 434 K-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp C-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred c-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCC
Confidence 9 899988999999999999999995 6654 7777 69999999999987655
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.7e-47 Score=452.67 Aligned_cols=496 Identities=21% Similarity=0.192 Sum_probs=335.5
Q ss_pred CcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEc
Q 003368 32 RRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYL 111 (825)
Q Consensus 32 ~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 111 (825)
..++.|||++|+|.+..+.+|.++++|++|||++|+|+++.|++|.++++|++|+|++|+|++..++.|.++++|++|+|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 57999999999999888889999999999999999999888889999999999999999999888889999999999999
Q ss_pred CCCCCCCCCChhhhcccccceeeccccccccc-cCccCCCCCCCCEEEcccCcCcccCCcccccccccce----ecCcCc
Q 003368 112 GRNKLEGSIPSEFVSLYNLKELAIQENNLTGG-IPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKS----LGLGGT 186 (825)
Q Consensus 112 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~----L~L~~~ 186 (825)
++|+|+++.+..|+++++|++|+|++|++++. .|..++.+++|++|+|++|+|++..|..|..+.+++. ++++.+
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 99999988888899999999999999999864 5788899999999999999999988998988877664 444432
Q ss_pred ----CCccccCCCCCceeecCCccccccCCchhhhcCCCCcEEEcccccC------CCCCCccccCCCCccEEEeecccc
Q 003368 187 ----IPPSIYNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFF------SGSFPLAFSNASNLQSLEILGNNF 256 (825)
Q Consensus 187 ----~p~~i~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l------~~~~p~~~~~l~~L~~L~L~~N~l 256 (825)
+++.......+..+++.+|.....++...+..+..++...+..+.. .......+..+..+..+++..+..
T Consensus 212 ~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~ 291 (635)
T 4g8a_A 212 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 291 (635)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence 3444445555667778877766555555555677777766654432 222233444444555555444432
Q ss_pred cC---ccccCcCCCCCCcEEEcccccCCCCCCCccccccccccCCCCCEEEcccccccccCCCCcc----------cccC
Q 003368 257 FG---KLSVNFGDMKSLAYLNVAINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALPHSIV----------SGSI 323 (825)
Q Consensus 257 ~~---~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~----------~~~i 323 (825)
.. .....+..+.+++.+++..+.+... ..+.....|+.|++.+|.+.+..+.... .+..
T Consensus 292 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--------~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 363 (635)
T 4g8a_A 292 DYYLDGIIDLFNCLTNVSSFSLVSVTIERV--------KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN 363 (635)
T ss_dssp CSCEEECTTTTGGGTTCSEEEEESCEEEEC--------GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCC
T ss_pred cccccchhhhhhhhcccccccccccccccc--------cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCC
Confidence 21 1222334444555555554443321 1223334455555555554421110000 0011
Q ss_pred CccccCCCCcCEEEcccCcccc--cCCccccCCCCCCEEEccccccccccCccccCCCCCcEEEcccCccccccC-CCCC
Q 003368 324 PSEIGKLVSLYLIEMDHNQFEG--KIPEEMSRLQNLQFLNMRHNQLSGEIPSSFGNLSSLVKLILGNNNLSGVIP-SSLG 400 (825)
Q Consensus 324 p~~l~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~ 400 (825)
+.....+++|+.+++++|.+.. ..+..+..+.+|++|+++.|.+. ..+..+..+++|+.++++.|+.....+ ..|.
T Consensus 364 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~ 442 (635)
T 4g8a_A 364 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 442 (635)
T ss_dssp BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTT
T ss_pred Ccccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhccccccccccccc
Confidence 1223456667777777776643 34555566667777777777666 345556667777777777666554433 3466
Q ss_pred CCCccceeecCCCCCccccchhhhcccccccccccCCCccc-cCCCccccccccccEEeecCceecccCCccccCCCCCC
Q 003368 401 NLKQLALLHLFQNDLSGAIPEEIFNISHMSDSLNFARNHLV-GSIPPKIGNLKVLRMFVVSSNNLSGEIPSEIGSCFYLQ 479 (825)
Q Consensus 401 ~l~~L~~L~L~~N~l~g~ip~~~~~~~~l~~~l~l~~N~l~-~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~ 479 (825)
.+++++.++++.|.+.+..|..+.....+ +.|++++|++. +.+|..+..+++|+.|+|++|++++..|..|+.+++|+
T Consensus 443 ~l~~l~~l~ls~n~l~~~~~~~~~~~~~L-~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~ 521 (635)
T 4g8a_A 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 521 (635)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cccccccccccccccccccccccccchhh-hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCC
Confidence 67777777777777776555555444444 56777776643 34566677777777777777777777777777777777
Q ss_pred EEEccCCcCCCCCCccccCCCCCCEEECCCCccccccCcccccc--cCceeeCCCCccee
Q 003368 480 EIYMAENFFRGSIPSSLVSLKDLREIDLSQNNLSGKIPISLERL--PLEYLNLSFNDLEG 537 (825)
Q Consensus 480 ~L~l~~N~l~g~~p~~~~~l~~L~~Ldls~N~l~~~~p~~~~~l--~L~~l~ls~N~l~g 537 (825)
+|+|++|+|++..|..|..+++|++|||++|+|++.+|..+..+ .|++|++++|++..
T Consensus 522 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 522 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp EEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred EEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 77777777776666667777777777777777777667666655 37777777776653
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.1e-47 Score=446.29 Aligned_cols=478 Identities=19% Similarity=0.207 Sum_probs=388.4
Q ss_pred CEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeecccc
Q 003368 59 REIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQEN 138 (825)
Q Consensus 59 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 138 (825)
-..|.++|.++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|+|++..|.+|.++++|++|+|++|
T Consensus 8 ~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 84 (549)
T 2z81_A 8 GVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84 (549)
T ss_dssp SEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred ceEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC
Confidence 44688999999 6777664 78999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCccCCCCCCCCEEEcccCcCcc-cCCcccccccccceecCcCc-----CC-ccccCCCCCceeecCCccccccC
Q 003368 139 NLTGGIPHFLGNITSLEAISLAYNSLGG-NIPSSLGQLKELKSLGLGGT-----IP-PSIYNLSLLANFSVPENRLHGSL 211 (825)
Q Consensus 139 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~~-----~p-~~i~~l~~l~~l~l~~N~l~~~l 211 (825)
++++..|..|+++++|++|+|++|++++ ..|..|+++++|++|+++++ +| ..+..++.|+.|++++|.+++.+
T Consensus 85 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 164 (549)
T 2z81_A 85 HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ 164 (549)
T ss_dssp CCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred ccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccC
Confidence 9998888889999999999999999987 46788999999999998754 33 46788999999999999999888
Q ss_pred CchhhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccCcc---ccCcCCCCCCcEEEcccccCCCCCCCcc
Q 003368 212 PPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGKL---SVNFGDMKSLAYLNVAINNLGSGESDEM 288 (825)
Q Consensus 212 p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~ls~N~l~~~~~~~~ 288 (825)
|..+. .+++|+.|+++.|.+....+..+..+++|++|++++|++.+.. ......+++|+.|+++.|.+..... .
T Consensus 165 ~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~ 241 (549)
T 2z81_A 165 SQSLK-SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF--N 241 (549)
T ss_dssp TTTTT-TCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHH--H
T ss_pred hhhhh-ccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHH--H
Confidence 88776 7889999999999887443334567899999999999987752 2234567889999998887753211 1
Q ss_pred ccccccccCCCCCEEEcccccccccCCCCcccccCCccccCCCCcCEEEcccCccccc-----CCccccCCCCCCEEEcc
Q 003368 289 SFIHSLANCSNLSFLNLVANQFKGALPHSIVSGSIPSEIGKLVSLYLIEMDHNQFEGK-----IPEEMSRLQNLQFLNMR 363 (825)
Q Consensus 289 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l~~l~~L~~L~L~~N~l~~~-----~p~~~~~l~~L~~L~Ls 363 (825)
.++..+..+++|+.+++++|.+.+...... .....+..+.+|+.+++.++.+... ++..+..+++|+.|+++
T Consensus 242 ~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~---~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~ 318 (549)
T 2z81_A 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNP---SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE 318 (549)
T ss_dssp HHHGGGGGCTTCCEEEEESCEEECCSCCCC---CTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEE
T ss_pred HHHHHhhhhccccccccccccccccccccc---cchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEec
Confidence 223445677899999999999886321110 1123456778888999998876532 22334456789999999
Q ss_pred ccccccccCccc-cCCCCCcEEEcccCccccccC---CCCCCCCccceeecCCCCCccccc--hhhhcccccccccccCC
Q 003368 364 HNQLSGEIPSSF-GNLSSLVKLILGNNNLSGVIP---SSLGNLKQLALLHLFQNDLSGAIP--EEIFNISHMSDSLNFAR 437 (825)
Q Consensus 364 ~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~L~~N~l~g~ip--~~~~~~~~l~~~l~l~~ 437 (825)
+|++. .+|..+ ..+++|++|+|++|++++.+| ..++.+++|+.|++++|++++..+ ..+..+..+ +.|++++
T Consensus 319 ~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L-~~L~Ls~ 396 (549)
T 2z81_A 319 NSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL-TSLDISR 396 (549)
T ss_dssp SSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTC-CEEECTT
T ss_pred cCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCC-CEEECCC
Confidence 99998 677766 579999999999999998764 458899999999999999985332 346666666 7899999
Q ss_pred CccccCCCccccccccccEEeecCceecccCCccccCCCCCCEEEccCCcCCCCCCccccCCCCCCEEECCCCccccccC
Q 003368 438 NHLVGSIPPKIGNLKVLRMFVVSSNNLSGEIPSEIGSCFYLQEIYMAENFFRGSIPSSLVSLKDLREIDLSQNNLSGKIP 517 (825)
Q Consensus 438 N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~~L~~Ldls~N~l~~~~p 517 (825)
|+++ .+|..++.+++|++|++++|+++ .+|..+. ++|+.|++++|++++.+ ..+++|++|||++|+++ .+|
T Consensus 397 N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip 467 (549)
T 2z81_A 397 NTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLP 467 (549)
T ss_dssp CCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCC
T ss_pred CCCc-cCChhhcccccccEEECCCCCcc-cccchhc--CCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCC
Confidence 9998 78999999999999999999998 5565543 58999999999999753 57899999999999999 677
Q ss_pred cccccc-cCceeeCCCCcceecCCC-CCccCccccccccCCC
Q 003368 518 ISLERL-PLEYLNLSFNDLEGQVPT-KGIFANASAISVSGNS 557 (825)
Q Consensus 518 ~~~~~l-~L~~l~ls~N~l~g~~p~-~~~~~~~~~~~~~~n~ 557 (825)
.. ..+ .|++|++++|++++.+|. ...+.++....+.+|+
T Consensus 468 ~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 468 DA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CG-GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred Cc-ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence 64 345 699999999999998775 3556677778888887
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5e-48 Score=462.17 Aligned_cols=437 Identities=19% Similarity=0.229 Sum_probs=360.8
Q ss_pred CCCCEEEcCCCcccccCCccccCCCCCCEEEC-CCCcCCCCCCcCCCCCC-CCCE-----E---------E-cCCCCCCC
Q 003368 56 SFLREIHLSNNTIQGKIPGEIGRLFRLEALYL-SHNSLVGEIPGNLSYCS-RLIG-----L---------Y-LGRNKLEG 118 (825)
Q Consensus 56 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-s~N~l~~~~p~~~~~l~-~L~~-----L---------~-Ls~N~l~~ 118 (825)
..++.|+|++|.++|.+|++|++|++|++||| ++|.++|..|-.-.... .+.. + + .....+++
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57899999999999999999999999999999 99999877443211110 0000 0 0 00011111
Q ss_pred CCCh-----------hhhcccccceeeccc--cccccccCccCCCCCCCCEEEcccCcCcc-----------------cC
Q 003368 119 SIPS-----------EFVSLYNLKELAIQE--NNLTGGIPHFLGNITSLEAISLAYNSLGG-----------------NI 168 (825)
Q Consensus 119 ~~p~-----------~~~~l~~L~~L~L~~--N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-----------------~~ 168 (825)
..+. .......++.+.+.. |++++ +|..|+++++|++|+|++|+|++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 1111 112333456666655 99998 89999999999999999999998 37
Q ss_pred Ccccc--cccccceecCcCcCCccccCCCCCceeecCCccccccCCchhhhcCCCCcEEEccccc-CCC-CCCccccCCC
Q 003368 169 PSSLG--QLKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNF-FSG-SFPLAFSNAS 244 (825)
Q Consensus 169 p~~~~--~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~-l~~-~~p~~~~~l~ 244 (825)
|..++ ++++|++| +|++|++.+.+|..+. .+++|+.|+|++|+ +++ .+|..+.+++
T Consensus 482 P~~l~f~~L~~L~~L-------------------~Ls~N~l~~~iP~~l~-~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~ 541 (876)
T 4ecn_A 482 NEELSWSNLKDLTDV-------------------ELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLA 541 (876)
T ss_dssp TSCCCGGGCTTCCEE-------------------EEESCTTCCSCCGGGG-GCSSCCEEECTTCTTSCHHHHHHHHHHHH
T ss_pred ChhhhhccCCCCCEE-------------------ECcCCCCCccChHHHh-CCCCCCEEECcCCCCcccccchHHHHhhh
Confidence 77766 77777766 8889999999998887 99999999999998 998 7887666555
Q ss_pred -------CccEEEeecccccCcccc--CcCCCCCCcEEEcccccCCCCCCCccccccccccCCCCCEEEcccccccccCC
Q 003368 245 -------NLQSLEILGNNFFGKLSV--NFGDMKSLAYLNVAINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALP 315 (825)
Q Consensus 245 -------~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 315 (825)
+|+.|+|++|++. .+|. .++.+++|+.|++++|.+... | .+..+++|+.|+|++|+++
T Consensus 542 ~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~l-------p-~~~~L~~L~~L~Ls~N~l~---- 608 (876)
T 4ecn_A 542 DDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHL-------E-AFGTNVKLTDLKLDYNQIE---- 608 (876)
T ss_dssp HCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBC-------C-CCCTTSEESEEECCSSCCS----
T ss_pred hcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccc-------h-hhcCCCcceEEECcCCccc----
Confidence 9999999999999 7787 899999999999999998732 4 6788999999999999998
Q ss_pred CCcccccCCccccCCCC-cCEEEcccCcccccCCccccCCCC--CCEEEccccccccccCccc---c--CCCCCcEEEcc
Q 003368 316 HSIVSGSIPSEIGKLVS-LYLIEMDHNQFEGKIPEEMSRLQN--LQFLNMRHNQLSGEIPSSF---G--NLSSLVKLILG 387 (825)
Q Consensus 316 ~~~~~~~ip~~l~~l~~-L~~L~L~~N~l~~~~p~~~~~l~~--L~~L~Ls~N~l~~~~p~~~---~--~l~~L~~L~Ls 387 (825)
.+|..+..+++ |+.|+|++|+++ .+|..+..++. |+.|+|++|++.+.+|... . .+++|+.|+|+
T Consensus 609 ------~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls 681 (876)
T 4ecn_A 609 ------EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS 681 (876)
T ss_dssp ------CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECC
T ss_pred ------cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEcc
Confidence 68888999999 999999999999 78888887754 9999999999998776433 2 34589999999
Q ss_pred cCccccccCCC-CCCCCccceeecCCCCCccccchhhhccc--------ccccccccCCCccccCCCcccc--ccccccE
Q 003368 388 NNNLSGVIPSS-LGNLKQLALLHLFQNDLSGAIPEEIFNIS--------HMSDSLNFARNHLVGSIPPKIG--NLKVLRM 456 (825)
Q Consensus 388 ~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~g~ip~~~~~~~--------~l~~~l~l~~N~l~~~~p~~~~--~l~~L~~ 456 (825)
+|+++. +|.. +..+++|+.|+|++|+++ .+|..++... .+ +.|++++|+++ .+|..+. .+++|+.
T Consensus 682 ~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L-~~L~Ls~N~L~-~lp~~l~~~~l~~L~~ 757 (876)
T 4ecn_A 682 YNEIQK-FPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLL-TTIDLRFNKLT-SLSDDFRATTLPYLSN 757 (876)
T ss_dssp SSCCCS-CCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGC-CEEECCSSCCC-CCCGGGSTTTCTTCCE
T ss_pred CCcCCc-cCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCc-cEEECCCCCCc-cchHHhhhccCCCcCE
Confidence 999994 5554 458999999999999999 8999887654 44 78999999999 8999987 9999999
Q ss_pred EeecCceecccCCccccCCCCCCEEEccC------CcCCCCCCccccCCCCCCEEECCCCccccccCcccccccCceeeC
Q 003368 457 FVVSSNNLSGEIPSEIGSCFYLQEIYMAE------NFFRGSIPSSLVSLKDLREIDLSQNNLSGKIPISLERLPLEYLNL 530 (825)
Q Consensus 457 L~ls~N~l~g~~p~~~~~l~~L~~L~l~~------N~l~g~~p~~~~~l~~L~~Ldls~N~l~~~~p~~~~~l~L~~l~l 530 (825)
|+|++|++++ +|..++.+++|+.|+|++ |++.+.+|..+..+++|+.|+|++|++ +.+|..+.. .|+.||+
T Consensus 758 L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~-~L~~LdL 834 (876)
T 4ecn_A 758 MDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTP-QLYILDI 834 (876)
T ss_dssp EECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCS-SSCEEEC
T ss_pred EEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhcC-CCCEEEC
Confidence 9999999997 899999999999999976 889999999999999999999999999 788887653 7999999
Q ss_pred CCCcceecCC
Q 003368 531 SFNDLEGQVP 540 (825)
Q Consensus 531 s~N~l~g~~p 540 (825)
++|++....+
T Consensus 835 s~N~l~~i~~ 844 (876)
T 4ecn_A 835 ADNPNISIDV 844 (876)
T ss_dssp CSCTTCEEEC
T ss_pred CCCCCCccCh
Confidence 9999875443
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.5e-48 Score=444.07 Aligned_cols=431 Identities=21% Similarity=0.203 Sum_probs=332.6
Q ss_pred CcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEc
Q 003368 32 RRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYL 111 (825)
Q Consensus 32 ~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 111 (825)
.+++.|||++|++.+..|..|..+++|++|+|++|+|++..|.+|+++++|++|||++|+|+ .+|.. .+++|++|+|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 68999999999999888889999999999999999999988999999999999999999999 45555 8999999999
Q ss_pred CCCCCCC-CCChhhhcccccceeeccccccccccCccCCCCCCC--CEEEcccCcC--cccCCcccccccc-cceecCcC
Q 003368 112 GRNKLEG-SIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSL--EAISLAYNSL--GGNIPSSLGQLKE-LKSLGLGG 185 (825)
Q Consensus 112 s~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L--~~L~Ls~N~l--~~~~p~~~~~l~~-L~~L~L~~ 185 (825)
++|+|++ .+|..|+++++|++|+|++|++++ ..|..+++| +.|+|++|++ ++..|..|..+.. ...+++++
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence 9999997 478999999999999999999986 467788888 9999999999 8889998888773 22334433
Q ss_pred c-----C-CccccCCCCCceeecCCcc-------ccccCCchhhhcCCCCcEEEcccccCCCCCCccc---cCCCCccEE
Q 003368 186 T-----I-PPSIYNLSLLANFSVPENR-------LHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAF---SNASNLQSL 249 (825)
Q Consensus 186 ~-----~-p~~i~~l~~l~~l~l~~N~-------l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L 249 (825)
+ + +..+..++.|+.+++++|. +.+.+| .+. .+++|+.|++++|.+++..+..+ ...++|+.|
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~-~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L 252 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQ-TNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGG-GCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred Ccchhhhhhhhhhcccceeeccccccccccccceeecchh-hhc-cccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence 2 1 2345667888888888886 666655 343 67888888888887765332211 124578888
Q ss_pred EeecccccCccccCc-----CCCCCCcEEEcccccCCCCCCCccccccccccC---CCCCEEEcccccccccCCCCcccc
Q 003368 250 EILGNNFFGKLSVNF-----GDMKSLAYLNVAINNLGSGESDEMSFIHSLANC---SNLSFLNLVANQFKGALPHSIVSG 321 (825)
Q Consensus 250 ~L~~N~l~~~~~~~~-----~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~~ 321 (825)
++++|++.+.+|..+ +.+++|+.++++.|.+ ..+. ..+..+ .+|+.|++++|.+.+
T Consensus 253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~------~~~~~~~~~~~L~~L~l~~n~l~~--------- 316 (520)
T 2z7x_B 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQ------SYIYEIFSNMNIKNFTVSGTRMVH--------- 316 (520)
T ss_dssp EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCT------HHHHHHHHTCCCSEEEEESSCCCC---------
T ss_pred EeecccccCccccchhhcccccCceeEeccccccce-ecch------hhhhcccccCceeEEEcCCCcccc---------
Confidence 888888887777777 7788888888887776 2211 122222 567888888877653
Q ss_pred cCCccccCCCCcCEEEcccCcccccCCccccCCCCCCEEEcccccccc--ccCccccCCCCCcEEEcccCccccccCC-C
Q 003368 322 SIPSEIGKLVSLYLIEMDHNQFEGKIPEEMSRLQNLQFLNMRHNQLSG--EIPSSFGNLSSLVKLILGNNNLSGVIPS-S 398 (825)
Q Consensus 322 ~ip~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~ 398 (825)
++ ....+++|+.|++++|++++.+|..++.+++|++|+|++|++.+ .+|..+..+++|++|++++|++++.+|. .
T Consensus 317 -~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~ 394 (520)
T 2z7x_B 317 -ML-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394 (520)
T ss_dssp -CC-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS
T ss_pred -cc-chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch
Confidence 11 11466777777788777777777777777777788887777775 4556677777777777777777764443 4
Q ss_pred CCCCCccceeecCCCCCccccchhhhcccccccccccCCCccccCCCccccccccccEEeecCceecccCCccccCCCCC
Q 003368 399 LGNLKQLALLHLFQNDLSGAIPEEIFNISHMSDSLNFARNHLVGSIPPKIGNLKVLRMFVVSSNNLSGEIPSEIGSCFYL 478 (825)
Q Consensus 399 ~~~l~~L~~L~L~~N~l~g~ip~~~~~~~~l~~~l~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L 478 (825)
+..+++|+.|++++|++++.+|. .+. ++|+.|++++|+++ .+|..+..+++|
T Consensus 395 ~~~l~~L~~L~Ls~N~l~~~~~~-------------------------~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L 446 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSNILTDTIFR-------------------------CLP--PRIKVLDLHSNKIK-SIPKQVVKLEAL 446 (520)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGG-------------------------SCC--TTCCEEECCSSCCC-CCCGGGGGCTTC
T ss_pred hccCccCCEEECcCCCCCcchhh-------------------------hhc--ccCCEEECCCCccc-ccchhhhcCCCC
Confidence 67777777777777777654443 222 56888999999998 888888899999
Q ss_pred CEEEccCCcCCCCCCcc-ccCCCCCCEEECCCCccccccC
Q 003368 479 QEIYMAENFFRGSIPSS-LVSLKDLREIDLSQNNLSGKIP 517 (825)
Q Consensus 479 ~~L~l~~N~l~g~~p~~-~~~l~~L~~Ldls~N~l~~~~p 517 (825)
++|++++|+++ .+|.. +..+++|+.|++++|++++..+
T Consensus 447 ~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 447 QELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 99999999998 56665 8899999999999999987654
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.4e-45 Score=429.32 Aligned_cols=457 Identities=19% Similarity=0.210 Sum_probs=361.7
Q ss_pred EEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCC
Q 003368 34 VTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGR 113 (825)
Q Consensus 34 l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 113 (825)
.+.+|++++++.+ +|..+. ++|++|+|++|+|++..|.+|.++++|++|+|++|+|++..|+.|.++++|++|||++
T Consensus 33 ~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 33 ESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 3789999999985 777664 8999999999999988889999999999999999999999999999999999999999
Q ss_pred CCCCCCCChhhhcccccceeeccccccccc-cCccCCCCCCCCEEEcccCcCcccCCccccccccc--ceecCcCcCCcc
Q 003368 114 NKLEGSIPSEFVSLYNLKELAIQENNLTGG-IPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKEL--KSLGLGGTIPPS 190 (825)
Q Consensus 114 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L--~~L~L~~~~p~~ 190 (825)
|+|+. +|.. .+++|++|+|++|++++. +|..|+++++|++|+|++|++++ ..|..+++| +.|
T Consensus 110 N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L--------- 174 (562)
T 3a79_B 110 NRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCI--------- 174 (562)
T ss_dssp SCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEE---------
T ss_pred CcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEE---------
Confidence 99994 5655 899999999999999974 46899999999999999999985 345555554 555
Q ss_pred ccCCCCCceeecCCccc--cccCCchhhhcCC-CCcEEEcccccCCCCCCc-cccCCCCccEEEeeccc-----ccCccc
Q 003368 191 IYNLSLLANFSVPENRL--HGSLPPSLGLTLS-NLQLFQISNNFFSGSFPL-AFSNASNLQSLEILGNN-----FFGKLS 261 (825)
Q Consensus 191 i~~l~~l~~l~l~~N~l--~~~lp~~~~~~l~-~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~-----l~~~~~ 261 (825)
++++|.+ ++..|..+. .+. ..-.+++++|.+.+.++. .+.++++|+.|++++|+ +.+. .
T Consensus 175 ----------~L~~n~l~~~~~~~~~l~-~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~ 242 (562)
T 3a79_B 175 ----------LLDLVSYHIKGGETESLQ-IPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-L 242 (562)
T ss_dssp ----------EEEESSCCCCSSSCCEEE-ECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-H
T ss_pred ----------EeecccccccccCccccc-ccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHH-H
Confidence 6667777 656665544 322 112557788887776653 46778888888888875 2222 2
Q ss_pred cCcCCCCCCcEEEcccccCCCCCCCccccccccccCCCCCEEEcccccccccCCCCcccccCCccc-----cCCCCcCEE
Q 003368 262 VNFGDMKSLAYLNVAINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALPHSIVSGSIPSEI-----GKLVSLYLI 336 (825)
Q Consensus 262 ~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l-----~~l~~L~~L 336 (825)
..+..++.|+.+++..+.+..... ...+.. ...++|++|++++|.++| .+|..+ .+++.|+.+
T Consensus 243 ~~l~~l~~L~~L~L~~~~l~~~~~--~~~~~~-~~~~~L~~L~l~~n~l~~---------~ip~~~~~~~~~~L~~L~~~ 310 (562)
T 3a79_B 243 SELTRGPTLLNVTLQHIETTWKCS--VKLFQF-FWPRPVEYLNIYNLTITE---------RIDREEFTYSETALKSLMIE 310 (562)
T ss_dssp HHHHSCSSCEEEEEEEEEECHHHH--HHHHHH-HTTSSEEEEEEEEEEECS---------CCCCCCCCCCSCSCCEEEEE
T ss_pred HHHhccCcceEEEecCCcCcHHHH--HHHHHh-hhcccccEEEEeccEeec---------cccchhhhcccccchheehh
Confidence 346677888888887776642110 011111 234589999999999998 455544 778888888
Q ss_pred EcccCcccccCC-ccccCC---CCCCEEEccccccccccCccccCCCCCcEEEcccCccccccCCCCCCCCccceeecCC
Q 003368 337 EMDHNQFEGKIP-EEMSRL---QNLQFLNMRHNQLSGEIPSSFGNLSSLVKLILGNNNLSGVIPSSLGNLKQLALLHLFQ 412 (825)
Q Consensus 337 ~L~~N~l~~~~p-~~~~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 412 (825)
+++.|.+ .+| ..+..+ .+|++|++++|.+.... ....+++|++|++++|++++.+|..++++++|+.|++++
T Consensus 311 ~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 386 (562)
T 3a79_B 311 HVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR 386 (562)
T ss_dssp EEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCS
T ss_pred hccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCC
Confidence 8888888 455 333332 67999999999986322 126789999999999999998999999999999999999
Q ss_pred CCCcc--ccchhhhcccccccccccCCCccccCCCc-cccccccccEEeecCceecccCCccccCCCCCCEEEccCCcCC
Q 003368 413 NDLSG--AIPEEIFNISHMSDSLNFARNHLVGSIPP-KIGNLKVLRMFVVSSNNLSGEIPSEIGSCFYLQEIYMAENFFR 489 (825)
Q Consensus 413 N~l~g--~ip~~~~~~~~l~~~l~l~~N~l~~~~p~-~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~ 489 (825)
|++++ .+|..+..+..+ +.|++++|++++.+|. .+..+++|+.|++++|++++.+|..+. ++|+.|++++|+++
T Consensus 387 N~l~~~~~~~~~~~~l~~L-~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~ 463 (562)
T 3a79_B 387 NGLKNFFKVALMTKNMSSL-ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM 463 (562)
T ss_dssp SCCCBTTHHHHTTTTCTTC-CEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC
T ss_pred CCcCCcccchhhhcCCCCC-CEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc
Confidence 99986 445667777777 7899999999986665 488899999999999999988887765 68999999999999
Q ss_pred CCCCccccCCCCCCEEECCCCccccccCcc-cccc-cCceeeCCCCcceecCCC
Q 003368 490 GSIPSSLVSLKDLREIDLSQNNLSGKIPIS-LERL-PLEYLNLSFNDLEGQVPT 541 (825)
Q Consensus 490 g~~p~~~~~l~~L~~Ldls~N~l~~~~p~~-~~~l-~L~~l~ls~N~l~g~~p~ 541 (825)
.+|..+..+++|++||+++|++++ +|.. +..+ .|+++++++|++.+..|.
T Consensus 464 -~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 464 -SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp -CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred -ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 788888899999999999999994 5554 7777 699999999999886653
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6.2e-44 Score=422.11 Aligned_cols=536 Identities=19% Similarity=0.182 Sum_probs=371.3
Q ss_pred CCcccccCCCCCCCCceeeceeecCCCCcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCE
Q 003368 5 YPEGVLNSWNDSHHFCDWEGITCSPRHRRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEA 84 (825)
Q Consensus 5 ~~~~~~~~w~~~~~~C~~~g~~c~~~~~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 84 (825)
|+...+++|..+ -+..|..+.|...... .|-++.+++ .+|..+- +++++|||++|+|+++.|.+|.++++|++
T Consensus 8 ~~~~~~~~~~~~-~p~~~~~c~~~~~~~~---~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~ 80 (635)
T 4g8a_A 8 DDDDKLAAANSS-IPESWEPCVEVVPNIT---YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQV 80 (635)
T ss_dssp ------------------CCSEEEETTTE---EECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCcchhhcccCC-CCCCCCCccccCCCCE---EECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCE
Confidence 455667778643 3444666666543322 345555664 5666552 47999999999999888899999999999
Q ss_pred EECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcC
Q 003368 85 LYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSL 164 (825)
Q Consensus 85 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 164 (825)
|||++|+|+++.|++|.++++|++|+|++|+|++..+.+|.++++|++|+|++|+|++..+..|+++++|++|+|++|++
T Consensus 81 L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l 160 (635)
T 4g8a_A 81 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 160 (635)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCcc
Confidence 99999999999999999999999999999999988889999999999999999999988888999999999999999999
Q ss_pred cc-cCCcccccccccceecCcCcC-----CccccCCCCC----ceeecCCccccccCCchhhhcCCCCcEEEcccccCCC
Q 003368 165 GG-NIPSSLGQLKELKSLGLGGTI-----PPSIYNLSLL----ANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSG 234 (825)
Q Consensus 165 ~~-~~p~~~~~l~~L~~L~L~~~~-----p~~i~~l~~l----~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~ 234 (825)
++ .+|..++.+++|++|+++++- |..+..+..+ ..++++.|.++ .+++..+ ....++.+++++|....
T Consensus 161 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~-~i~~~~~-~~~~~~~l~l~~n~~~~ 238 (635)
T 4g8a_A 161 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAF-KEIRLHKLTLRNNFDSL 238 (635)
T ss_dssp CCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC-EECTTTT-TTCEEEEEEEESCCSSH
T ss_pred ccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccc-ccCcccc-cchhhhhhhhhcccccc
Confidence 86 457888888888888665432 2222222221 23444555554 2333332 22334445555544332
Q ss_pred CC-CccccCCCCccEEEeeccccc------CccccCcCCCCCCcEEEcccccCCCCCCCccccccccccCCCCCEEEccc
Q 003368 235 SF-PLAFSNASNLQSLEILGNNFF------GKLSVNFGDMKSLAYLNVAINNLGSGESDEMSFIHSLANCSNLSFLNLVA 307 (825)
Q Consensus 235 ~~-p~~~~~l~~L~~L~L~~N~l~------~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~ 307 (825)
.. +..+..+..++...+..+... ......+..+..+...++..+..... ....+..+..+.+++.+++.+
T Consensus 239 ~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~l~~~~ 315 (635)
T 4g8a_A 239 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY---LDGIIDLFNCLTNVSSFSLVS 315 (635)
T ss_dssp HHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSC---EEECTTTTGGGTTCSEEEEES
T ss_pred cccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhccc---ccchhhhhhhhcccccccccc
Confidence 11 223444444444444333221 11122233333444444433322211 111123455677899999999
Q ss_pred ccccccCCCCccc------------ccCCccccCCCCcCEEEcccCcccccCCccccCCCCCCEEEccccccc--cccCc
Q 003368 308 NQFKGALPHSIVS------------GSIPSEIGKLVSLYLIEMDHNQFEGKIPEEMSRLQNLQFLNMRHNQLS--GEIPS 373 (825)
Q Consensus 308 N~l~~~~~~~~~~------------~~ip~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~ 373 (825)
|.+.+..+..... +.++ ...+..|+.++++.|.+... .....+++|++|++++|.+. +..+.
T Consensus 316 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~ 391 (635)
T 4g8a_A 316 VTIERVKDFSYNFGWQHLELVNCKFGQFP--TLKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQ 391 (635)
T ss_dssp CEEEECGGGGSCCCCSEEEEESCEESSCC--CCBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCH
T ss_pred cccccccccccchhhhhhhcccccccCcC--cccchhhhhcccccccCCCC--cccccccccccchhhcccccccccccc
Confidence 9887422111000 0000 11234455555555554422 22346788999999999885 34566
Q ss_pred cccCCCCCcEEEcccCccccccCCCCCCCCccceeecCCCCCccccchhhhcccccccccccCCCccccCCCcccccccc
Q 003368 374 SFGNLSSLVKLILGNNNLSGVIPSSLGNLKQLALLHLFQNDLSGAIPEEIFNISHMSDSLNFARNHLVGSIPPKIGNLKV 453 (825)
Q Consensus 374 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~ip~~~~~~~~l~~~l~l~~N~l~~~~p~~~~~l~~ 453 (825)
.+..+.+|++|+++.|.+.+ .+..+..+++|+.++++.|......+...+........++++.|.+.+..|..+..++.
T Consensus 392 ~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~ 470 (635)
T 4g8a_A 392 SDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 470 (635)
T ss_dssp HHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred chhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchh
Confidence 77788899999999998874 46678899999999999998887766655443333478999999999999999999999
Q ss_pred ccEEeecCceec-ccCCccccCCCCCCEEEccCCcCCCCCCccccCCCCCCEEECCCCccccccCcccccc-cCceeeCC
Q 003368 454 LRMFVVSSNNLS-GEIPSEIGSCFYLQEIYMAENFFRGSIPSSLVSLKDLREIDLSQNNLSGKIPISLERL-PLEYLNLS 531 (825)
Q Consensus 454 L~~L~ls~N~l~-g~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~~L~~Ldls~N~l~~~~p~~~~~l-~L~~l~ls 531 (825)
|+.|++++|++. +.+|..|..+++|++|+|++|++++..|..|.++++|++|+|++|+|++..|..+..+ .|++|+++
T Consensus 471 L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls 550 (635)
T 4g8a_A 471 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 550 (635)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECT
T ss_pred hhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECC
Confidence 999999999854 4678899999999999999999999999999999999999999999999888889888 69999999
Q ss_pred CCcceecCCCC-Ccc-CccccccccCCC
Q 003368 532 FNDLEGQVPTK-GIF-ANASAISVSGNS 557 (825)
Q Consensus 532 ~N~l~g~~p~~-~~~-~~~~~~~~~~n~ 557 (825)
+|+|++.+|.. ..+ .++....+.+|+
T Consensus 551 ~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 551 LNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 99999988854 223 456778888988
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2e-44 Score=419.60 Aligned_cols=433 Identities=22% Similarity=0.187 Sum_probs=304.2
Q ss_pred CcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEc
Q 003368 32 RRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYL 111 (825)
Q Consensus 32 ~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 111 (825)
.+++.|||++|.+.+..|.+|..+++|++|+|++|+|++..|++|+++++|++|||++|+|+ .+|.. .+++|++|+|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 68999999999999988899999999999999999999999999999999999999999999 55655 8999999999
Q ss_pred CCCCCCCC-CChhhhcccccceeeccccccccccCccCCCCCCC--CEEEcccCcC--cccCCcccccccccce--ecCc
Q 003368 112 GRNKLEGS-IPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSL--EAISLAYNSL--GGNIPSSLGQLKELKS--LGLG 184 (825)
Q Consensus 112 s~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L--~~L~Ls~N~l--~~~~p~~~~~l~~L~~--L~L~ 184 (825)
++|++++. .|..|+++++|++|+|++|++++. .|..+++| +.|+|++|++ ++..|..|..+.. +. ++++
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~-~~l~l~l~ 204 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT-TVLHLVFH 204 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCE-EEEEEEEC
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCc-ceEEEEec
Confidence 99999974 468999999999999999999863 56666666 9999999999 8899998888752 22 3333
Q ss_pred Cc-----CC-ccccCCCCCceeecCCcc-----ccccCCchhhhcCCCCcEEEcccccCCCCCCc---cccCCCCccEEE
Q 003368 185 GT-----IP-PSIYNLSLLANFSVPENR-----LHGSLPPSLGLTLSNLQLFQISNNFFSGSFPL---AFSNASNLQSLE 250 (825)
Q Consensus 185 ~~-----~p-~~i~~l~~l~~l~l~~N~-----l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~ 250 (825)
++ ++ ..+..++.|+.+++++|+ +.+.+ ..+. .+++|+.|+|+++.+++.... .....++|++|+
T Consensus 205 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~-~~l~-~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~ 282 (562)
T 3a79_B 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL-SELT-RGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN 282 (562)
T ss_dssp SSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH-HHHH-SCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEE
T ss_pred CccchhhhhhhcccccceEEEecccccccccchHHHHH-HHHh-ccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEE
Confidence 21 11 133456666777777664 22221 1222 566677777666665432110 011234677777
Q ss_pred eecccccCccccCc-----CCCCCCcEEEcccccCCCCCCCccccccccccCCCCCEEEcccccccccCCCCcccccCCc
Q 003368 251 ILGNNFFGKLSVNF-----GDMKSLAYLNVAINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALPHSIVSGSIPS 325 (825)
Q Consensus 251 L~~N~l~~~~~~~~-----~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip~ 325 (825)
+++|++.+.+|..+ ..++.|+.+++..|.+ ..+. .....+....+|+.|++++|.+.. ++
T Consensus 283 l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~---~~~~~~~~~~~L~~L~l~~n~~~~----------~~- 347 (562)
T 3a79_B 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSK---EALYSVFAEMNIKMLSISDTPFIH----------MV- 347 (562)
T ss_dssp EEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCH---HHHHHHHHTCCCSEEEEESSCCCC----------CC-
T ss_pred EeccEeeccccchhhhcccccchheehhhccccee-ecCh---hhhhhhhccCcceEEEccCCCccc----------cc-
Confidence 77777776666655 5555555555555544 1110 000111112456666666666542 11
Q ss_pred cccCCCCcCEEEcccCcccccCCccccCCCCCCEEEcccccccc--ccCccccCCCCCcEEEcccCccccccC-CCCCCC
Q 003368 326 EIGKLVSLYLIEMDHNQFEGKIPEEMSRLQNLQFLNMRHNQLSG--EIPSSFGNLSSLVKLILGNNNLSGVIP-SSLGNL 402 (825)
Q Consensus 326 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l 402 (825)
....+++|+.|++++|++++.+|..++++++|++|+|++|++++ .+|..|..+++|++|++++|++++.+| ..+..+
T Consensus 348 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l 427 (562)
T 3a79_B 348 CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA 427 (562)
T ss_dssp CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCC
T ss_pred CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCc
Confidence 11455666666666666666666666666666666666666664 234556666666666666666665333 335666
Q ss_pred CccceeecCCCCCccccchhhhcccccccccccCCCccccCCCccccccccccEEeecCceecccCCccccCCCCCCEEE
Q 003368 403 KQLALLHLFQNDLSGAIPEEIFNISHMSDSLNFARNHLVGSIPPKIGNLKVLRMFVVSSNNLSGEIPSEIGSCFYLQEIY 482 (825)
Q Consensus 403 ~~L~~L~L~~N~l~g~ip~~~~~~~~l~~~l~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~ 482 (825)
++|+.|++++|++++. +|..+. ++|+.|++++|+++ .+|..+..+++|+.|+
T Consensus 428 ~~L~~L~l~~n~l~~~-------------------------~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~ 479 (562)
T 3a79_B 428 ESILVLNLSSNMLTGS-------------------------VFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELN 479 (562)
T ss_dssp TTCCEEECCSSCCCGG-------------------------GGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEE
T ss_pred ccCCEEECCCCCCCcc-------------------------hhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEE
Confidence 6666666666666543 333332 57889999999998 7888888999999999
Q ss_pred ccCCcCCCCCCcc-ccCCCCCCEEECCCCccccccC
Q 003368 483 MAENFFRGSIPSS-LVSLKDLREIDLSQNNLSGKIP 517 (825)
Q Consensus 483 l~~N~l~g~~p~~-~~~l~~L~~Ldls~N~l~~~~p 517 (825)
+++|+++ .+|.. +..+++|+.|++++|++++..|
T Consensus 480 L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 480 VASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 9999999 56665 8999999999999999997665
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7.7e-43 Score=395.63 Aligned_cols=367 Identities=20% Similarity=0.222 Sum_probs=243.3
Q ss_pred CCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCC-CcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceee
Q 003368 56 SFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEI-PGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELA 134 (825)
Q Consensus 56 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 134 (825)
++|++|+|++|+|++..|..|+++++|++|+|++|.+.+.+ |..|.++++|++|+|++|++++..|..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 67888888888888777888888888888888888886443 56788888888888888888877788888888888888
Q ss_pred ccccccccccCcc--CCCCCCCCEEEcccCcCcccCCcc-cccccccceecCcCcCCccccCCCCCceeecCCccccccC
Q 003368 135 IQENNLTGGIPHF--LGNITSLEAISLAYNSLGGNIPSS-LGQLKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSL 211 (825)
Q Consensus 135 L~~N~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~l 211 (825)
|++|++++..|.. |+++++|++|+|++|++++..|.. |.++++|++| ++++|++++..
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L-------------------~L~~n~l~~~~ 170 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL-------------------DLTFNKVKSIC 170 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEE-------------------ECTTCCBSCCC
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEE-------------------eCCCCcccccC
Confidence 8888887654443 778888888888888887666654 5555555555 55555555444
Q ss_pred CchhhhcC--CCCcEEEcccccCCCCCCccc--------cCCCCccEEEeecccccCccccCcCCCCCCcEEEcccccCC
Q 003368 212 PPSLGLTL--SNLQLFQISNNFFSGSFPLAF--------SNASNLQSLEILGNNFFGKLSVNFGDMKSLAYLNVAINNLG 281 (825)
Q Consensus 212 p~~~~~~l--~~L~~L~Ls~N~l~~~~p~~~--------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~ 281 (825)
|..+. .+ .+|+.|++++|.+.+..+..+ ..+++|+.|+|++|++.+..+..+..+
T Consensus 171 ~~~l~-~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~-------------- 235 (455)
T 3v47_A 171 EEDLL-NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA-------------- 235 (455)
T ss_dssp TTTSG-GGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH--------------
T ss_pred hhhhh-ccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc--------------
Confidence 44333 22 456666666666665443322 234555555555555544433222111
Q ss_pred CCCCCccccccccccCCCCCEEEcccccccccCCCCcccccCCccccCCCCcCEEEcccCcccccCCccccC--CCCCCE
Q 003368 282 SGESDEMSFIHSLANCSNLSFLNLVANQFKGALPHSIVSGSIPSEIGKLVSLYLIEMDHNQFEGKIPEEMSR--LQNLQF 359 (825)
Q Consensus 282 ~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l~~l~~L~~L~L~~N~l~~~~p~~~~~--l~~L~~ 359 (825)
...++|+.|++++|.+.+.. +..+.+.+..+..+.. .++|++
T Consensus 236 -------------~~~~~L~~L~l~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~L~~ 279 (455)
T 3v47_A 236 -------------IAGTKIQSLILSNSYNMGSS-----------------------FGHTNFKDPDNFTFKGLEASGVKT 279 (455)
T ss_dssp -------------TTTCCEEEEECTTCTTTSCC-----------------------TTCCSSCCCCTTTTGGGTTSCCCE
T ss_pred -------------ccccceeeEeeccccccccc-----------------------cchhhhccCcccccccccccCceE
Confidence 11244555555555444210 0111222222222222 356777
Q ss_pred EEccccccccccCccccCCCCCcEEEcccCccccccCCCCCCCCccceeecCCCCCccccchhhhcccccccccccCCCc
Q 003368 360 LNMRHNQLSGEIPSSFGNLSSLVKLILGNNNLSGVIPSSLGNLKQLALLHLFQNDLSGAIPEEIFNISHMSDSLNFARNH 439 (825)
Q Consensus 360 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~ip~~~~~~~~l~~~l~l~~N~ 439 (825)
|++++|++.+..|..|..+++|++|+|++|++++..|..|+.+++|+.|+|++|++++.
T Consensus 280 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--------------------- 338 (455)
T 3v47_A 280 CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI--------------------- 338 (455)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE---------------------
T ss_pred EEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCc---------------------
Confidence 77777777777777777777777777777777777777777777777777777766532
Q ss_pred cccCCCccccccccccEEeecCceecccCCccccCCCCCCEEEccCCcCCCCCCccccCCCCCCEEECCCCccccccC
Q 003368 440 LVGSIPPKIGNLKVLRMFVVSSNNLSGEIPSEIGSCFYLQEIYMAENFFRGSIPSSLVSLKDLREIDLSQNNLSGKIP 517 (825)
Q Consensus 440 l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~~L~~Ldls~N~l~~~~p 517 (825)
.|..++.+++|+.|++++|++++..|..++.+++|++|++++|++++..+..+..+++|+.|++++|++++.+|
T Consensus 339 ----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 339 ----DSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp ----CGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ----ChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 23345566777788888888877777788888888888888888886666667788888888888888887776
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.2e-42 Score=389.38 Aligned_cols=406 Identities=23% Similarity=0.255 Sum_probs=224.1
Q ss_pred CcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCC-------------CEEECCCCcCCCCCCc
Q 003368 32 RRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRL-------------EALYLSHNSLVGEIPG 98 (825)
Q Consensus 32 ~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------------~~L~Ls~N~l~~~~p~ 98 (825)
.+++.|++++|++ +.+|++|+++++|++|++++|+++|.+|.+++.+.+| ++|++++|.+++. |.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l-p~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL-PE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-CS
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC-CC
Confidence 5788899999988 8899999999999999999999998899999888765 8888888888853 33
Q ss_pred CCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccCCccccccccc
Q 003368 99 NLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKEL 178 (825)
Q Consensus 99 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 178 (825)
. .++|++|++++|++++ +|.. +++|++|++++|++++ +|.. .++|++|++++|++++ +| .|+++++|
T Consensus 89 ~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L 155 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFL 155 (454)
T ss_dssp C---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTC
T ss_pred C---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCC
Confidence 2 3678888888888886 5543 3778888888888885 3322 1688888888888875 55 47777777
Q ss_pred ceecCcCcCCccccCCCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccC
Q 003368 179 KSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFG 258 (825)
Q Consensus 179 ~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 258 (825)
++| ++++|++++ +|.. ..+|++|++++|++++ +| .|.++++|+.|++++|++.+
T Consensus 156 ~~L-------------------~l~~N~l~~-lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 156 KII-------------------DVDNNSLKK-LPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK 209 (454)
T ss_dssp CEE-------------------ECCSSCCSC-CCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS
T ss_pred CEE-------------------ECCCCcCcc-cCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc
Confidence 666 667777774 5543 3588888888888886 45 58888888888888888776
Q ss_pred ccccCcCCCCCCcEEEcccccCCCCCCCccccccccccCCCCCEEEcccccccccCCCCcccccCCccccCCCCcCEEEc
Q 003368 259 KLSVNFGDMKSLAYLNVAINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALPHSIVSGSIPSEIGKLVSLYLIEM 338 (825)
Q Consensus 259 ~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l~~l~~L~~L~L 338 (825)
. |.. .++|++|++++|.+... | .+..+++|++|++++|++++ +|.. +++|+.|++
T Consensus 210 l-~~~---~~~L~~L~l~~n~l~~l-------p-~~~~l~~L~~L~l~~N~l~~----------l~~~---~~~L~~L~l 264 (454)
T 1jl5_A 210 L-PDL---PLSLESIVAGNNILEEL-------P-ELQNLPFLTTIYADNNLLKT----------LPDL---PPSLEALNV 264 (454)
T ss_dssp C-CCC---CTTCCEEECCSSCCSSC-------C-CCTTCTTCCEEECCSSCCSS----------CCSC---CTTCCEEEC
T ss_pred C-CCC---cCcccEEECcCCcCCcc-------c-ccCCCCCCCEEECCCCcCCc----------cccc---ccccCEEEC
Confidence 3 222 24777777777776532 2 25567777777777777763 3322 256777777
Q ss_pred ccCcccccCCccccCCCCCCEEEccccccccccCccccCCCCCcEEEcccCccccccCCCCCCCCccceeecCCCCCccc
Q 003368 339 DHNQFEGKIPEEMSRLQNLQFLNMRHNQLSGEIPSSFGNLSSLVKLILGNNNLSGVIPSSLGNLKQLALLHLFQNDLSGA 418 (825)
Q Consensus 339 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~ 418 (825)
++|++++ +|.. .++|++|++++|++++ +|.. .++|++|++++|++++. +.. .++|+.|++++|++++
T Consensus 265 ~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~i-~~~---~~~L~~L~Ls~N~l~~- 331 (454)
T 1jl5_A 265 RDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRSL-CDL---PPSLEELNVSNNKLIE- 331 (454)
T ss_dssp CSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSEE-CCC---CTTCCEEECCSSCCSC-
T ss_pred CCCcccc-cCcc---cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCcc-cCC---cCcCCEEECCCCcccc-
Confidence 7777775 4432 3667777777777765 2221 15677777777777652 221 1466777777777764
Q ss_pred cchhhhcccccccccccCCCccccCCCccccccccccEEeecCceecc--cCCccccCCCCCCEEEccCCcCCCCCCccc
Q 003368 419 IPEEIFNISHMSDSLNFARNHLVGSIPPKIGNLKVLRMFVVSSNNLSG--EIPSEIGSCFYLQEIYMAENFFRGSIPSSL 496 (825)
Q Consensus 419 ip~~~~~~~~l~~~l~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g--~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~ 496 (825)
+|..+ ..+ +.|++++|+++ .+|. .+++|+.|++++|++++ .+|.+++. ++.|.+.|.+|..
T Consensus 332 lp~~~---~~L-~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~- 394 (454)
T 1jl5_A 332 LPALP---PRL-ERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL- 394 (454)
T ss_dssp CCCCC---TTC-CEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC---------
T ss_pred ccccC---CcC-CEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc-
Confidence 55432 222 45666666665 3444 34556666666666665 45544432 2235555555542
Q ss_pred cCCCCCCEEECCCCcccc--ccCcccccccCceeeCCCCcceecCC
Q 003368 497 VSLKDLREIDLSQNNLSG--KIPISLERLPLEYLNLSFNDLEGQVP 540 (825)
Q Consensus 497 ~~l~~L~~Ldls~N~l~~--~~p~~~~~l~L~~l~ls~N~l~g~~p 540 (825)
+++|+.||+++|++++ .+|.++ +.|.+.+|.+.+.+|
T Consensus 395 --~~~L~~L~ls~N~l~~~~~iP~sl-----~~L~~~~~~~~~~~~ 433 (454)
T 1jl5_A 395 --PQNLKQLHVETNPLREFPDIPESV-----EDLRMNSERVVDPYE 433 (454)
T ss_dssp ----------------------------------------------
T ss_pred --cCcCCEEECCCCcCCccccchhhH-----hheeCcCcccCCccc
Confidence 3567777777777765 455443 334555555555444
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.2e-42 Score=389.63 Aligned_cols=366 Identities=20% Similarity=0.213 Sum_probs=245.6
Q ss_pred CcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccC-CccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEE
Q 003368 32 RRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKI-PGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLY 110 (825)
Q Consensus 32 ~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 110 (825)
.+++.|||++|++.+..|..|.++++|++|+|++|.+.+.+ |..|.++++|++|+|++|++++..|..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 67999999999999999999999999999999999998554 67899999999999999999999999999999999999
Q ss_pred cCCCCCCCCCChh--hhcccccceeeccccccccccCcc-CCCCCCCCEEEcccCcCcccCCcccccc--cccceecCcC
Q 003368 111 LGRNKLEGSIPSE--FVSLYNLKELAIQENNLTGGIPHF-LGNITSLEAISLAYNSLGGNIPSSLGQL--KELKSLGLGG 185 (825)
Q Consensus 111 Ls~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l--~~L~~L~L~~ 185 (825)
|++|++++..|.. |..+++|++|+|++|++++..|.. |.++++|++|+|++|++++..|..+..+ .+|+.|+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~--- 186 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR--- 186 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEE---
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccc---
Confidence 9999999866555 999999999999999999888876 8999999999999999999999888877 5666664
Q ss_pred cCCccccCCCCCceeecCCccccccCCchh-------hhcCCCCcEEEcccccCCCCCCccccCC---CCccEEEeeccc
Q 003368 186 TIPPSIYNLSLLANFSVPENRLHGSLPPSL-------GLTLSNLQLFQISNNFFSGSFPLAFSNA---SNLQSLEILGNN 255 (825)
Q Consensus 186 ~~p~~i~~l~~l~~l~l~~N~l~~~lp~~~-------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~L~~N~ 255 (825)
+++|.+.+.-+..+ ...+++|+.|++++|.+++..|..|... ++|+.|++++|.
T Consensus 187 ----------------l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 250 (455)
T 3v47_A 187 ----------------LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250 (455)
T ss_dssp ----------------CTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCT
T ss_pred ----------------cccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccc
Confidence 44555542211110 0134567777777777766666555443 667777777765
Q ss_pred ccCccccCcCCCCCCcEEEcccccCCCCCCCccccccccccCCCCCEEEcccccccccCCCCcccccCCccccCCCCcCE
Q 003368 256 FFGKLSVNFGDMKSLAYLNVAINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALPHSIVSGSIPSEIGKLVSLYL 335 (825)
Q Consensus 256 l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l~~l~~L~~ 335 (825)
+.+... ..+.+.......+ .-...++|+.|++++|.+++ .+|..+..+++|+.
T Consensus 251 ~~~~~~--------------~~~~~~~~~~~~~----~~~~~~~L~~L~l~~n~l~~---------~~~~~~~~l~~L~~ 303 (455)
T 3v47_A 251 NMGSSF--------------GHTNFKDPDNFTF----KGLEASGVKTCDLSKSKIFA---------LLKSVFSHFTDLEQ 303 (455)
T ss_dssp TTSCCT--------------TCCSSCCCCTTTT----GGGTTSCCCEEECCSSCCCE---------ECTTTTTTCTTCCE
T ss_pred cccccc--------------chhhhccCccccc----ccccccCceEEEecCccccc---------cchhhcccCCCCCE
Confidence 543211 0111111000000 00112455555555555553 33444555555555
Q ss_pred EEcccCcccccCCccccCCCCCCEEEccccccccccCccccCCCCCcEEEcccCccccccCCCCCCCCccceeecCCCCC
Q 003368 336 IEMDHNQFEGKIPEEMSRLQNLQFLNMRHNQLSGEIPSSFGNLSSLVKLILGNNNLSGVIPSSLGNLKQLALLHLFQNDL 415 (825)
Q Consensus 336 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 415 (825)
|++++|++++..|..|.++++|++|+|++|++.+..|..|..+++|++|+|++|++++..|..|..+++|++|++++|++
T Consensus 304 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 383 (455)
T 3v47_A 304 LTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383 (455)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcc
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred ccccchh-hhcccccccccccCCCccccCCC
Q 003368 416 SGAIPEE-IFNISHMSDSLNFARNHLVGSIP 445 (825)
Q Consensus 416 ~g~ip~~-~~~~~~l~~~l~l~~N~l~~~~p 445 (825)
++ +|.. +..+..+ +.|++++|++++..|
T Consensus 384 ~~-~~~~~~~~l~~L-~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 384 KS-VPDGIFDRLTSL-QKIWLHTNPWDCSCP 412 (455)
T ss_dssp SC-CCTTTTTTCTTC-CEEECCSSCBCCCTT
T ss_pred cc-CCHhHhccCCcc-cEEEccCCCcccCCC
Confidence 53 3332 2333333 455555555555544
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.3e-42 Score=387.97 Aligned_cols=389 Identities=24% Similarity=0.288 Sum_probs=274.2
Q ss_pred CCcEEEEECCCCCCccccCcCCCCCCCC-------------CEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCC
Q 003368 31 HRRVTVLDLKSKGLIGSLSPQIGNLSFL-------------REIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIP 97 (825)
Q Consensus 31 ~~~l~~l~L~~n~l~~~~~~~~~~l~~L-------------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 97 (825)
..+++.|++++|++.+.+|+.++.+++| ++|++++|++++ +|.. .++|++|++++|++++ +|
T Consensus 33 L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp 107 (454)
T 1jl5_A 33 VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LP 107 (454)
T ss_dssp -CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CC
T ss_pred ccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-cc
Confidence 3678889999999999999999999875 999999999996 4542 4789999999999997 66
Q ss_pred cCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccCCcccccccc
Q 003368 98 GNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKE 177 (825)
Q Consensus 98 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 177 (825)
.. +++|++|++++|++++ +|.. .++|++|++++|++++ +| .|+++++|++|++++|++++ +|..+ .+
T Consensus 108 ~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~ 174 (454)
T 1jl5_A 108 EL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PS 174 (454)
T ss_dssp CC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TT
T ss_pred cc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---cc
Confidence 53 4899999999999996 3332 2689999999999996 67 59999999999999999985 55433 24
Q ss_pred cceecCcCcCCccccCCCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeeccccc
Q 003368 178 LKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFF 257 (825)
Q Consensus 178 L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 257 (825)
|+ .|++++|++++ +| .+. .+++|+.|++++|++++ +|.. .++|++|++++|++.
T Consensus 175 L~-------------------~L~L~~n~l~~-l~-~~~-~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 175 LE-------------------FIAAGNNQLEE-LP-ELQ-NLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE 228 (454)
T ss_dssp CC-------------------EEECCSSCCSS-CC-CCT-TCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS
T ss_pred cc-------------------EEECcCCcCCc-Cc-ccc-CCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC
Confidence 44 44888899985 77 344 89999999999999997 4433 258999999999998
Q ss_pred CccccCcCCCCCCcEEEcccccCCCCCCCccccccccccCCCCCEEEcccccccccCCCCcccccCCccccCCCCcCEEE
Q 003368 258 GKLSVNFGDMKSLAYLNVAINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALPHSIVSGSIPSEIGKLVSLYLIE 337 (825)
Q Consensus 258 ~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l~~l~~L~~L~ 337 (825)
.+| .++.+++|++|++++|++...+. .+++|+.|++++|++++ +|.. .++|+.|+
T Consensus 229 -~lp-~~~~l~~L~~L~l~~N~l~~l~~----------~~~~L~~L~l~~N~l~~----------l~~~---~~~L~~L~ 283 (454)
T 1jl5_A 229 -ELP-ELQNLPFLTTIYADNNLLKTLPD----------LPPSLEALNVRDNYLTD----------LPEL---PQSLTFLD 283 (454)
T ss_dssp -SCC-CCTTCTTCCEEECCSSCCSSCCS----------CCTTCCEEECCSSCCSC----------CCCC---CTTCCEEE
T ss_pred -ccc-ccCCCCCCCEEECCCCcCCcccc----------cccccCEEECCCCcccc----------cCcc---cCcCCEEE
Confidence 455 48999999999999999976431 23789999999999984 4443 37899999
Q ss_pred cccCcccccCCccccCCCCCCEEEccccccccccCccccCCCCCcEEEcccCccccccCCCCCCCCccceeecCCCCCcc
Q 003368 338 MDHNQFEGKIPEEMSRLQNLQFLNMRHNQLSGEIPSSFGNLSSLVKLILGNNNLSGVIPSSLGNLKQLALLHLFQNDLSG 417 (825)
Q Consensus 338 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g 417 (825)
+++|++++. |.. .++|++|++++|++.+ ++.. .++|++|++++|++++ +|.. +++|+.|++++|+++
T Consensus 284 ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~-i~~~---~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~- 350 (454)
T 1jl5_A 284 VSENIFSGL-SEL---PPNLYYLNASSNEIRS-LCDL---PPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA- 350 (454)
T ss_dssp CCSSCCSEE-SCC---CTTCCEEECCSSCCSE-ECCC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-
T ss_pred CcCCccCcc-cCc---CCcCCEEECcCCcCCc-ccCC---cCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-
Confidence 999999973 221 2689999999999985 3321 2589999999999997 5654 588999999999999
Q ss_pred ccchhhhcccccccccccCCCcccc--CCCccccccccccEEeecCceecccCCccccCCCCCCEEEccCCcCCC--CCC
Q 003368 418 AIPEEIFNISHMSDSLNFARNHLVG--SIPPKIGNLKVLRMFVVSSNNLSGEIPSEIGSCFYLQEIYMAENFFRG--SIP 493 (825)
Q Consensus 418 ~ip~~~~~~~~l~~~l~l~~N~l~~--~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g--~~p 493 (825)
.+|. .+..+ +.|++++|++++ .+|..+++ ++.|++.|.+|.. +++|+.|++++|++++ .+|
T Consensus 351 ~lp~---~l~~L-~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP 415 (454)
T 1jl5_A 351 EVPE---LPQNL-KQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIP 415 (454)
T ss_dssp CCCC---CCTTC-CEEECCSSCCSSCCCCCTTCCE--------EECCC--------------------------------
T ss_pred cccc---hhhhc-cEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCccccch
Confidence 6887 23444 789999999999 78887764 3468888888874 5789999999999997 677
Q ss_pred ccccCCCCCCEEECCCCccccccCccccc
Q 003368 494 SSLVSLKDLREIDLSQNNLSGKIPISLER 522 (825)
Q Consensus 494 ~~~~~l~~L~~Ldls~N~l~~~~p~~~~~ 522 (825)
.+ ++.|++++|.+.+.+|.....
T Consensus 416 ~s------l~~L~~~~~~~~~~~~~~~~~ 438 (454)
T 1jl5_A 416 ES------VEDLRMNSERVVDPYEFAHET 438 (454)
T ss_dssp -----------------------------
T ss_pred hh------HhheeCcCcccCCccccCHHH
Confidence 54 566788999998887765543
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.2e-39 Score=367.39 Aligned_cols=362 Identities=19% Similarity=0.174 Sum_probs=260.0
Q ss_pred ccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhh
Q 003368 45 IGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEF 124 (825)
Q Consensus 45 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 124 (825)
.+..+..++.+++|++|++++|.|++. | .|+.+++|++|+|++|+|++. | |+.+++|++|+|++|+|++. | |
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~ 102 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--V 102 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--C
T ss_pred CcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--c
Confidence 344455677888889999999988864 5 688888899999999988865 3 88888888888888888864 3 7
Q ss_pred hcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcCCccccCCCCCceeecCC
Q 003368 125 VSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSIYNLSLLANFSVPE 204 (825)
Q Consensus 125 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~ 204 (825)
+.+++|++|++++|++++. | ++.+++|++|++++|++++. + ++.+++|++| ++++
T Consensus 103 ~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L-------------------~l~~ 157 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTEL-------------------DCHL 157 (457)
T ss_dssp TTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEE-------------------ECTT
T ss_pred CCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEE-------------------ECCC
Confidence 8888888888888888864 3 78888888888888888753 2 4555555554 4555
Q ss_pred ccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccCccccCcCCCCCCcEEEcccccCCCCC
Q 003368 205 NRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLAYLNVAINNLGSGE 284 (825)
Q Consensus 205 N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~ 284 (825)
|...+.++ +. .+++|+.|++++|++++. | +..+++|+.|++++|++.+.
T Consensus 158 n~~~~~~~--~~-~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~------------------------- 206 (457)
T 3bz5_A 158 NKKITKLD--VT-PQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL------------------------- 206 (457)
T ss_dssp CSCCCCCC--CT-TCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC-------------------------
T ss_pred CCcccccc--cc-cCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee-------------------------
Confidence 54444442 22 556666666666666652 2 55556666666665555432
Q ss_pred CCccccccccccCCCCCEEEcccccccccCCCCcccccCCccccCCCCcCEEEcccCcccccCCccccCCCCCCEEEccc
Q 003368 285 SDEMSFIHSLANCSNLSFLNLVANQFKGALPHSIVSGSIPSEIGKLVSLYLIEMDHNQFEGKIPEEMSRLQNLQFLNMRH 364 (825)
Q Consensus 285 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 364 (825)
.+..+++|+.|++++|++++ +| +..+++|+.|++++|++++.. ++.+++|+.|++++
T Consensus 207 --------~l~~l~~L~~L~Ls~N~l~~----------ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~ 263 (457)
T 3bz5_A 207 --------DLNQNIQLTFLDCSSNKLTE----------ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQ 263 (457)
T ss_dssp --------CCTTCTTCSEEECCSSCCSC----------CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTT
T ss_pred --------ccccCCCCCEEECcCCcccc----------cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccC
Confidence 13455667777777777763 44 566777777777777777643 34567777777776
Q ss_pred cccccccCccccCCCCCcEEEcccCccccccCCCCCCCCccceeecCCCCCccccchhhhcccccccccccCCCccccCC
Q 003368 365 NQLSGEIPSSFGNLSSLVKLILGNNNLSGVIPSSLGNLKQLALLHLFQNDLSGAIPEEIFNISHMSDSLNFARNHLVGSI 444 (825)
Q Consensus 365 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~ip~~~~~~~~l~~~l~l~~N~l~~~~ 444 (825)
| +|+.|++++|.+.+.+| ++.+++|+.|++++|.+.|.+|.... .+ +.+++++
T Consensus 264 n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~---~L-~~L~l~~------- 316 (457)
T 3bz5_A 264 T--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAA---GI-TELDLSQ------- 316 (457)
T ss_dssp C--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTC---CC-SCCCCTT-------
T ss_pred C--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCC---cc-eEechhh-------
Confidence 5 35567788888777776 56788888888888888887775332 22 3444443
Q ss_pred CccccccccccEEeecCceecccCCccccCCCCCCEEEccCCcCCCCCCccccCCCCCCEEECCCCccccccCcccccc-
Q 003368 445 PPKIGNLKVLRMFVVSSNNLSGEIPSEIGSCFYLQEIYMAENFFRGSIPSSLVSLKDLREIDLSQNNLSGKIPISLERL- 523 (825)
Q Consensus 445 p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~~L~~Ldls~N~l~~~~p~~~~~l- 523 (825)
+++|+.|++++|+++| +| ++.+++|+.|++++|++++ ++.|..|++++|+++|. + .+
T Consensus 317 ------~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-~----~~~ 374 (457)
T 3bz5_A 317 ------NPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-G----QTI 374 (457)
T ss_dssp ------CTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-E----EEE
T ss_pred ------cccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-c----eee
Confidence 3678999999999998 43 8999999999999999985 35677788999999986 2 23
Q ss_pred cCceeeCCCCcceecCCCC
Q 003368 524 PLEYLNLSFNDLEGQVPTK 542 (825)
Q Consensus 524 ~L~~l~ls~N~l~g~~p~~ 542 (825)
.+..+++++|+++|.+|..
T Consensus 375 ~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 375 TMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp ECCCBCCBTTBEEEECCTT
T ss_pred ecCccccccCcEEEEcChh
Confidence 5788999999999999863
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.1e-38 Score=354.87 Aligned_cols=348 Identities=17% Similarity=0.188 Sum_probs=259.9
Q ss_pred CCcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEE
Q 003368 31 HRRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLY 110 (825)
Q Consensus 31 ~~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 110 (825)
..+++.||+++|++.+. | .++.+++|++|+|++|+|++. | |+.+++|++|+|++|+|++. | |..+++|++|+
T Consensus 41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN 112 (457)
T ss_dssp HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence 36899999999999875 4 799999999999999999974 4 89999999999999999975 3 99999999999
Q ss_pred cCCCCCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcCCcc
Q 003368 111 LGRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPS 190 (825)
Q Consensus 111 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~ 190 (825)
|++|++++. | ++.+++|++|++++|++++. .++.+++|++|++++|+..+.+ .++.+++|++|
T Consensus 113 L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L--------- 175 (457)
T 3bz5_A 113 CDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTL--------- 175 (457)
T ss_dssp CCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEE---------
T ss_pred CCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEE---------
Confidence 999999974 4 89999999999999999975 3889999999999999765555 46677777777
Q ss_pred ccCCCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccCccccCcCCCCCC
Q 003368 191 IYNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGKLSVNFGDMKSL 270 (825)
Q Consensus 191 i~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 270 (825)
++++|++++ +| + ..+++|+.|++++|.+++. .+..+++|+.|+|++|++.+ +| +..+++|
T Consensus 176 ----------~ls~n~l~~-l~--l-~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L 235 (457)
T 3bz5_A 176 ----------DCSFNKITE-LD--V-SQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQL 235 (457)
T ss_dssp ----------ECCSSCCCC-CC--C-TTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTC
T ss_pred ----------ECCCCccce-ec--c-ccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCC
Confidence 666666664 44 2 2667777777777777764 36777777777777777776 33 6677777
Q ss_pred cEEEcccccCCCCCCCccccccccccCCCCCEEEcccccccccCCCCcccccCCccccCCCCcCEEEcccCcccccCCcc
Q 003368 271 AYLNVAINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALPHSIVSGSIPSEIGKLVSLYLIEMDHNQFEGKIPEE 350 (825)
Q Consensus 271 ~~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l~~l~~L~~L~L~~N~l~~~~p~~ 350 (825)
++|++++|++.... +..+++|+.|+++.|+++ .+++++|.+.+.+|
T Consensus 236 ~~L~l~~N~l~~~~---------~~~l~~L~~L~l~~n~L~-----------------------~L~l~~n~~~~~~~-- 281 (457)
T 3bz5_A 236 TYFDCSVNPLTELD---------VSTLSKLTTLHCIQTDLL-----------------------EIDLTHNTQLIYFQ-- 281 (457)
T ss_dssp SEEECCSSCCSCCC---------CTTCTTCCEEECTTCCCS-----------------------CCCCTTCTTCCEEE--
T ss_pred CEEEeeCCcCCCcC---------HHHCCCCCEEeccCCCCC-----------------------EEECCCCccCCccc--
Confidence 77777777776532 234556666666555443 23344444444443
Q ss_pred ccCCCCCCEEEccccccccccCcc--------ccCCCCCcEEEcccCccccccCCCCCCCCccceeecCCCCCccccchh
Q 003368 351 MSRLQNLQFLNMRHNQLSGEIPSS--------FGNLSSLVKLILGNNNLSGVIPSSLGNLKQLALLHLFQNDLSGAIPEE 422 (825)
Q Consensus 351 ~~~l~~L~~L~Ls~N~l~~~~p~~--------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~ip~~ 422 (825)
++.+++|++|++++|.+.+.+|.. +..+++|++|++++|++++. + ++.+++|+.|++++|+++| +|
T Consensus 282 ~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~-l~-- 355 (457)
T 3bz5_A 282 AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD-FS-- 355 (457)
T ss_dssp CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB-CT--
T ss_pred ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC-cc--
Confidence 234444444444444444333321 23346889999999999984 3 8889999999999999986 32
Q ss_pred hhcccccccccccCCCccccCCCccccccccccEEeecCceecccCCccccC
Q 003368 423 IFNISHMSDSLNFARNHLVGSIPPKIGNLKVLRMFVVSSNNLSGEIPSEIGS 474 (825)
Q Consensus 423 ~~~~~~l~~~l~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~ 474 (825)
.+ ..|++++|.+.|. +.+..|+.+++++|+++|.+|..+..
T Consensus 356 -----~L-~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 356 -----SV-GKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp -----TG-GGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred -----cc-ccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhc
Confidence 22 4677888888876 46677888899999999999876644
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.3e-38 Score=359.55 Aligned_cols=344 Identities=27% Similarity=0.414 Sum_probs=190.1
Q ss_pred CCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceee
Q 003368 55 LSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELA 134 (825)
Q Consensus 55 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 134 (825)
+++|+.|++++|.++. +|. +..+++|++|||++|.+++..| |..+++|++|++++|++++..+ |.++++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~-l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-IDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCC-CTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred hccccEEecCCCCCcc-Ccc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 4556666666666653 342 5566666666666666664443 6666666666666666664433 66666666666
Q ss_pred ccccccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcCCccccCCCCCceeecCCccccccCCch
Q 003368 135 IQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLPPS 214 (825)
Q Consensus 135 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~ 214 (825)
+++|++++..+ +.++++|++|++++|++++ ++ .++.+++|+.|++++ .+.+ +++
T Consensus 119 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~--------------------~~~~-~~~- 172 (466)
T 1o6v_A 119 LFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGN--------------------QVTD-LKP- 172 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEE--------------------SCCC-CGG-
T ss_pred CCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCC--------------------cccC-chh-
Confidence 66666664432 6666666666666666653 22 355555555553321 1111 111
Q ss_pred hhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccCccccCcCCCCCCcEEEcccccCCCCCCCcccccccc
Q 003368 215 LGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLAYLNVAINNLGSGESDEMSFIHSL 294 (825)
Q Consensus 215 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~ 294 (825)
+ ..+++|+.|++++|.+++. ..+..+++|++|++++|.+.+..+ ++.+++|+.|++++|.+... ..+
T Consensus 173 ~-~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--------~~l 239 (466)
T 1o6v_A 173 L-ANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--------GTL 239 (466)
T ss_dssp G-TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--------GGG
T ss_pred h-ccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--------hhh
Confidence 1 2455555555555555533 235555555566655555554443 44455555555555555432 234
Q ss_pred ccCCCCCEEEcccccccccCCCCcccccCCccccCCCCcCEEEcccCcccccCCccccCCCCCCEEEccccccccccCcc
Q 003368 295 ANCSNLSFLNLVANQFKGALPHSIVSGSIPSEIGKLVSLYLIEMDHNQFEGKIPEEMSRLQNLQFLNMRHNQLSGEIPSS 374 (825)
Q Consensus 295 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 374 (825)
..+++|+.|++++|.+++ +++ +..+++|+.|++++|.+++..+ +..+++|++|+|++|++.+..|
T Consensus 240 ~~l~~L~~L~l~~n~l~~----------~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-- 304 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQISN----------LAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-- 304 (466)
T ss_dssp GGCTTCSEEECCSSCCCC----------CGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--
T ss_pred hcCCCCCEEECCCCcccc----------chh-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--
Confidence 556666666666666653 222 5566666666666666665433 6666666666666666665433
Q ss_pred ccCCCCCcEEEcccCccccccCCCCCCCCccceeecCCCCCccccchhhhcccccccccccCCCccccCCCccccccccc
Q 003368 375 FGNLSSLVKLILGNNNLSGVIPSSLGNLKQLALLHLFQNDLSGAIPEEIFNISHMSDSLNFARNHLVGSIPPKIGNLKVL 454 (825)
Q Consensus 375 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~ip~~~~~~~~l~~~l~l~~N~l~~~~p~~~~~l~~L 454 (825)
+..+++|++|++++|++++..| +..+++|+.|++++|++++. +.+..+..+ +.|++++|++++..| +..+++|
T Consensus 305 ~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L-~~L~l~~n~l~~~~~--~~~l~~L 377 (466)
T 1o6v_A 305 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNI-NWLSAGHNQISDLTP--LANLTRI 377 (466)
T ss_dssp GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTC-CEEECCSSCCCBCGG--GTTCTTC
T ss_pred hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCC-CEEeCCCCccCccch--hhcCCCC
Confidence 5666666666666666666554 55666666666666666532 122233322 333444444433333 4444455
Q ss_pred cEEeecCceec
Q 003368 455 RMFVVSSNNLS 465 (825)
Q Consensus 455 ~~L~ls~N~l~ 465 (825)
+.|++++|.++
T Consensus 378 ~~L~l~~n~~~ 388 (466)
T 1o6v_A 378 TQLGLNDQAWT 388 (466)
T ss_dssp CEEECCCEEEE
T ss_pred CEEeccCCccc
Confidence 55555555555
No 32
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=7.9e-40 Score=350.98 Aligned_cols=278 Identities=29% Similarity=0.537 Sum_probs=216.7
Q ss_pred CCcccccCCCCCCCCce--eeceeecCCC--CcEEEEECCCCCCcc--ccCcCCCCCCCCCEEEcCC-CcccccCCcccc
Q 003368 5 YPEGVLNSWNDSHHFCD--WEGITCSPRH--RRVTVLDLKSKGLIG--SLSPQIGNLSFLREIHLSN-NTIQGKIPGEIG 77 (825)
Q Consensus 5 ~~~~~~~~w~~~~~~C~--~~g~~c~~~~--~~l~~l~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~ 77 (825)
||. .+.+|..+++||. |.||+|.... ++|+.|||++|++.+ .+|+.|..+++|++|+|++ |.+.+.+|.+|+
T Consensus 20 ~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~ 98 (313)
T 1ogq_A 20 NPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA 98 (313)
T ss_dssp CCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG
T ss_pred Ccc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh
Confidence 665 7999988889998 9999998765 789999999999998 8899999999999999994 888888898899
Q ss_pred CCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeeccccccccccCccCCCCC-CCCE
Q 003368 78 RLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNIT-SLEA 156 (825)
Q Consensus 78 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~ 156 (825)
++++|++|+|++|+|++.+|..|..+++|++|+|++|+|++.+|..|..+++|++|+|++|++++.+|..|..++ +|++
T Consensus 99 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~ 178 (313)
T 1ogq_A 99 KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS 178 (313)
T ss_dssp GCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCE
T ss_pred cCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcE
Confidence 999999999988888888888888888888888888888888888888888888888888888877777777777 7788
Q ss_pred EEcccCcCcccCCcccccccccceecCcCcCCccccCCCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCC
Q 003368 157 ISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSF 236 (825)
Q Consensus 157 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~ 236 (825)
|+|++|++++.+|..|..++ |+.|+|++|.+++..
T Consensus 179 L~L~~N~l~~~~~~~~~~l~---------------------------------------------L~~L~Ls~N~l~~~~ 213 (313)
T 1ogq_A 179 MTISRNRLTGKIPPTFANLN---------------------------------------------LAFVDLSRNMLEGDA 213 (313)
T ss_dssp EECCSSEEEEECCGGGGGCC---------------------------------------------CSEEECCSSEEEECC
T ss_pred EECcCCeeeccCChHHhCCc---------------------------------------------ccEEECcCCcccCcC
Confidence 87777777766665544432 555555566665556
Q ss_pred CccccCCCCccEEEeecccccCccccCcCCCCCCcEEEcccccCCCCCCCccccccccccCCCCCEEEcccccccccCCC
Q 003368 237 PLAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLAYLNVAINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALPH 316 (825)
Q Consensus 237 p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 316 (825)
|..|..+++|+.|+|++|++.+.++. +..+++|++|+|++|++++
T Consensus 214 ~~~~~~l~~L~~L~L~~N~l~~~~~~-------------------------------~~~l~~L~~L~Ls~N~l~~---- 258 (313)
T 1ogq_A 214 SVLFGSDKNTQKIHLAKNSLAFDLGK-------------------------------VGLSKNLNGLDLRNNRIYG---- 258 (313)
T ss_dssp GGGCCTTSCCSEEECCSSEECCBGGG-------------------------------CCCCTTCCEEECCSSCCEE----
T ss_pred CHHHhcCCCCCEEECCCCceeeecCc-------------------------------ccccCCCCEEECcCCcccC----
Confidence 66666777777777777766544322 3345566777777777765
Q ss_pred CcccccCCccccCCCCcCEEEcccCcccccCCccccCCCCCCEEEccccc-ccc
Q 003368 317 SIVSGSIPSEIGKLVSLYLIEMDHNQFEGKIPEEMSRLQNLQFLNMRHNQ-LSG 369 (825)
Q Consensus 317 ~~~~~~ip~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~ 369 (825)
.+|..+..+++|+.|++++|+++|.+|.. ..+++|+.|++++|. +.|
T Consensus 259 -----~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 259 -----TLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp -----CCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred -----cCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 56677777888888888888888888775 778888888888887 554
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1e-37 Score=355.71 Aligned_cols=321 Identities=22% Similarity=0.238 Sum_probs=264.0
Q ss_pred EEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCC
Q 003368 36 VLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNK 115 (825)
Q Consensus 36 ~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 115 (825)
.++.+++++. .+|..+. ++|+.|+|++|+|++..|..|.++++|++|+|++|.|++..|..|.++++|++|+|++|+
T Consensus 15 ~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 3555666664 4566553 689999999999998889999999999999999999999999999999999999999999
Q ss_pred CCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcCCccccCCC
Q 003368 116 LEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSIYNLS 195 (825)
Q Consensus 116 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i~~l~ 195 (825)
++++.+..|.++++|++|+|++|++++..|..|.++++|+.|+|++|++++..|..|.++++|+.|
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-------------- 157 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQL-------------- 157 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEE--------------
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEE--------------
Confidence 998777789999999999999999998889999999999999999999998888888887777777
Q ss_pred CCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccCccccCcCCCCCCcEEEc
Q 003368 196 LLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLAYLNV 275 (825)
Q Consensus 196 ~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 275 (825)
++++|+++ .+|...+..+++|+.|+|++|.+++..+..|..+++|+.|++++|++.+.++....
T Consensus 158 -----~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---------- 221 (477)
T 2id5_A 158 -----TLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL---------- 221 (477)
T ss_dssp -----EEESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT----------
T ss_pred -----ECCCCcCc-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc----------
Confidence 66677777 45655555788888888888888887777888888888888888876655543322
Q ss_pred ccccCCCCCCCccccccccccCCCCCEEEcccccccccCCCCcccccCC-ccccCCCCcCEEEcccCcccccCCccccCC
Q 003368 276 AINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALPHSIVSGSIP-SEIGKLVSLYLIEMDHNQFEGKIPEEMSRL 354 (825)
Q Consensus 276 s~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip-~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l 354 (825)
...+|+.|++++|+++ .+| ..+..+++|+.|+|++|.+++..+..|.++
T Consensus 222 --------------------~~~~L~~L~l~~n~l~----------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (477)
T 2id5_A 222 --------------------YGLNLTSLSITHCNLT----------AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271 (477)
T ss_dssp --------------------TTCCCSEEEEESSCCC----------SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTC
T ss_pred --------------------cCccccEEECcCCccc----------ccCHHHhcCccccCeeECCCCcCCccChhhcccc
Confidence 2336777777777776 344 356778888888888888887777788888
Q ss_pred CCCCEEEccccccccccCccccCCCCCcEEEcccCccccccCCCCCCCCccceeecCCCCCcccc
Q 003368 355 QNLQFLNMRHNQLSGEIPSSFGNLSSLVKLILGNNNLSGVIPSSLGNLKQLALLHLFQNDLSGAI 419 (825)
Q Consensus 355 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~i 419 (825)
++|++|+|++|++.+..|..|..+++|++|+|++|++++..+..|..+++|+.|++++|.+....
T Consensus 272 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDC 336 (477)
T ss_dssp TTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred ccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCcc
Confidence 88888888888888888888888888999999999888777777888888999999998887543
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.1e-37 Score=351.72 Aligned_cols=346 Identities=25% Similarity=0.387 Sum_probs=208.3
Q ss_pred CCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEE
Q 003368 78 RLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAI 157 (825)
Q Consensus 78 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 157 (825)
.+.+|+.|++++|.++. +|. +..+++|++|+|++|++++..| |.++++|++|++++|++++..+ |+++++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-IDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCcc-Ccc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 45678999999998874 453 7888899999999999886544 8888889999999998886655 8888888888
Q ss_pred EcccCcCcccCCcccccccccceecCcCcCCccccCCCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCC
Q 003368 158 SLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFP 237 (825)
Q Consensus 158 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p 237 (825)
+|++|++++..+ |..+++|++| ++++|.+++ +|. +. .+++|+.|+++ |.+.+..
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L-------------------~l~~n~l~~-~~~-~~-~l~~L~~L~l~-~~~~~~~- 171 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRL-------------------ELSSNTISD-ISA-LS-GLTSLQQLSFG-NQVTDLK- 171 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEE-------------------EEEEEEECC-CGG-GT-TCTTCSEEEEE-ESCCCCG-
T ss_pred ECCCCCCCCChH--HcCCCCCCEE-------------------ECCCCccCC-Chh-hc-cCCcccEeecC-CcccCch-
Confidence 888888875432 4444444444 444444442 221 22 45555555554 3333221
Q ss_pred ccccCCCCccEEEeecccccCccccCcCCCCCCcEEEcccccCCCCCCCccccccccccCCCCCEEEcccccccccCCCC
Q 003368 238 LAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLAYLNVAINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALPHS 317 (825)
Q Consensus 238 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 317 (825)
.+.++++|+.|++++|.+.+. ..+..+++|++|++++|.+++
T Consensus 172 -~~~~l~~L~~L~l~~n~l~~~--------------------------------~~l~~l~~L~~L~l~~n~l~~----- 213 (466)
T 1o6v_A 172 -PLANLTTLERLDISSNKVSDI--------------------------------SVLAKLTNLESLIATNNQISD----- 213 (466)
T ss_dssp -GGTTCTTCCEEECCSSCCCCC--------------------------------GGGGGCTTCSEEECCSSCCCC-----
T ss_pred -hhccCCCCCEEECcCCcCCCC--------------------------------hhhccCCCCCEEEecCCcccc-----
Confidence 244555555555555544332 124455566666666666553
Q ss_pred cccccCCccccCCCCcCEEEcccCcccccCCccccCCCCCCEEEccccccccccCccccCCCCCcEEEcccCccccccCC
Q 003368 318 IVSGSIPSEIGKLVSLYLIEMDHNQFEGKIPEEMSRLQNLQFLNMRHNQLSGEIPSSFGNLSSLVKLILGNNNLSGVIPS 397 (825)
Q Consensus 318 ~~~~~ip~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 397 (825)
+++ ++.+++|+.|++++|++++. +.+..+++|++|++++|++.+..| +..+++|++|++++|++++..|
T Consensus 214 -----~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~- 282 (466)
T 1o6v_A 214 -----ITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP- 282 (466)
T ss_dssp -----CGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG-
T ss_pred -----ccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc-
Confidence 111 44556666666666666542 245566666666666666664433 5566666666666666665433
Q ss_pred CCCCCCccceeecCCCCCccccchhhhcccccccccccCCCccccCCCccccccccccEEeecCceecccCCccccCCCC
Q 003368 398 SLGNLKQLALLHLFQNDLSGAIPEEIFNISHMSDSLNFARNHLVGSIPPKIGNLKVLRMFVVSSNNLSGEIPSEIGSCFY 477 (825)
Q Consensus 398 ~~~~l~~L~~L~L~~N~l~g~ip~~~~~~~~l~~~l~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~ 477 (825)
+..+++|+.|++++|++++..| +..+..+ +.|++++|++++..| ++.+++|+.|++++|++++. +.++.+++
T Consensus 283 -~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L-~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~ 354 (466)
T 1o6v_A 283 -LAGLTALTNLELNENQLEDISP--ISNLKNL-TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTN 354 (466)
T ss_dssp -GTTCTTCSEEECCSSCCSCCGG--GGGCTTC-SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTT
T ss_pred -ccCCCccCeEEcCCCcccCchh--hcCCCCC-CEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCC
Confidence 5566666666666666653222 2233333 344444444443333 45556666666666666643 35666666
Q ss_pred CCEEEccCCcCCCCCCccccCCCCCCEEECCCCcccc
Q 003368 478 LQEIYMAENFFRGSIPSSLVSLKDLREIDLSQNNLSG 514 (825)
Q Consensus 478 L~~L~l~~N~l~g~~p~~~~~l~~L~~Ldls~N~l~~ 514 (825)
|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 355 L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 355 INWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 6666666666665554 5666666666666666664
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.7e-37 Score=341.48 Aligned_cols=351 Identities=18% Similarity=0.179 Sum_probs=277.5
Q ss_pred ccCCCCCCCCce-eeceeecCCCCcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECC
Q 003368 10 LNSWNDSHHFCD-WEGITCSPRHRRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLS 88 (825)
Q Consensus 10 ~~~w~~~~~~C~-~~g~~c~~~~~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 88 (825)
+++|..+.+||. |.+..|.....++ ............-..+++++.|++++|.++...+..|..+++|++|+|+
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~~~~~~i-----~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~ 77 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCVFYDVHI-----DMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77 (390)
T ss_dssp ----CCEECBCC------EEEESCEE-----CSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECT
T ss_pred cCCCCCccceehhhhhhccceeeeee-----ecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEECC
Confidence 678988888885 6666665433222 1111111222223457899999999999997666678999999999999
Q ss_pred CCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccC
Q 003368 89 HNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNI 168 (825)
Q Consensus 89 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 168 (825)
+|.|++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|+++...+..|.++++|++|+|++|++++..
T Consensus 78 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 157 (390)
T 3o6n_A 78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157 (390)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence 99999888889999999999999999999988899999999999999999999766667899999999999999999888
Q ss_pred CcccccccccceecCcCcCCccccCCCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCCCccE
Q 003368 169 PSSLGQLKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQS 248 (825)
Q Consensus 169 p~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 248 (825)
|..|..+++|++| ++++|++++ ++. ..+++|+.|++++|.+++ +...++|+.
T Consensus 158 ~~~~~~l~~L~~L-------------------~l~~n~l~~-~~~---~~l~~L~~L~l~~n~l~~-----~~~~~~L~~ 209 (390)
T 3o6n_A 158 DDTFQATTSLQNL-------------------QLSSNRLTH-VDL---SLIPSLFHANVSYNLLST-----LAIPIAVEE 209 (390)
T ss_dssp TTTTSSCTTCCEE-------------------ECCSSCCSB-CCG---GGCTTCSEEECCSSCCSE-----EECCSSCSE
T ss_pred hhhccCCCCCCEE-------------------ECCCCcCCc-ccc---ccccccceeecccccccc-----cCCCCcceE
Confidence 8888888888888 666777763 332 267889999999998874 345568999
Q ss_pred EEeecccccCccccCcCCCCCCcEEEcccccCCCCCCCccccccccccCCCCCEEEcccccccccCCCCcccccCCcccc
Q 003368 249 LEILGNNFFGKLSVNFGDMKSLAYLNVAINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALPHSIVSGSIPSEIG 328 (825)
Q Consensus 249 L~L~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l~ 328 (825)
|++++|.+...... ..++|+.|++++|.+... ..+..+++|+.|++++|.+++ ..|..+.
T Consensus 210 L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~--------~~l~~l~~L~~L~Ls~n~l~~---------~~~~~~~ 269 (390)
T 3o6n_A 210 LDASHNSINVVRGP---VNVELTILKLQHNNLTDT--------AWLLNYPGLVEVDLSYNELEK---------IMYHPFV 269 (390)
T ss_dssp EECCSSCCCEEECC---CCSSCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCE---------EESGGGT
T ss_pred EECCCCeeeecccc---ccccccEEECCCCCCccc--------HHHcCCCCccEEECCCCcCCC---------cChhHcc
Confidence 99999988765332 347889999999988752 357788999999999999986 4567788
Q ss_pred CCCCcCEEEcccCcccccCCccccCCCCCCEEEccccccccccCccccCCCCCcEEEcccCccccccCCCCCCCCcccee
Q 003368 329 KLVSLYLIEMDHNQFEGKIPEEMSRLQNLQFLNMRHNQLSGEIPSSFGNLSSLVKLILGNNNLSGVIPSSLGNLKQLALL 408 (825)
Q Consensus 329 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 408 (825)
.+++|+.|++++|++++ +|..+..+++|++|+|++|++. .+|..+..+++|++|+|++|+++.. | +..+++|+.|
T Consensus 270 ~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L 344 (390)
T 3o6n_A 270 KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNL 344 (390)
T ss_dssp TCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEE
T ss_pred ccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEE
Confidence 89999999999999985 5666788999999999999998 5677788899999999999999854 3 7788899999
Q ss_pred ecCCCCCccc
Q 003368 409 HLFQNDLSGA 418 (825)
Q Consensus 409 ~L~~N~l~g~ 418 (825)
++++|.+++.
T Consensus 345 ~l~~N~~~~~ 354 (390)
T 3o6n_A 345 TLSHNDWDCN 354 (390)
T ss_dssp ECCSSCEEHH
T ss_pred EcCCCCccch
Confidence 9999999854
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=5.1e-37 Score=359.14 Aligned_cols=359 Identities=18% Similarity=0.181 Sum_probs=277.5
Q ss_pred cCCcccccCCCCCCCCce-eeceeecCCCCcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCC
Q 003368 4 QYPEGVLNSWNDSHHFCD-WEGITCSPRHRRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRL 82 (825)
Q Consensus 4 ~~~~~~~~~w~~~~~~C~-~~g~~c~~~~~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 82 (825)
.++.-.+++|..+.+||. |.+..|......+ +........ ...-..+.+++.|++++|.++...+..|..+++|
T Consensus 3 g~~~~~l~~~~~~~~C~~~~~~~~c~~~~~~i---~~~~~~~~~--~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L 77 (597)
T 3oja_B 3 GQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHI---DMQTQDVYF--GFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77 (597)
T ss_dssp --------CCCSEECCCCC--CCSEEECSCEE---CSSCCCCEE--SCSSGGGCCCSEEEESSCEESEECTHHHHHCCCC
T ss_pred CcccccccCCCCCCcCcccCcCceeEecCcee---ccccccccc--CcccccCCCceEEEeeCCCCCCcCHHHHccCCCC
Confidence 344556899988888885 4444454332111 111112111 1122357889999999999998777788999999
Q ss_pred CEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccC
Q 003368 83 EALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYN 162 (825)
Q Consensus 83 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 162 (825)
++|+|++|.|++..|..|..+++|++|+|++|.|++..|..|+++++|++|+|++|.|++..+..|+++++|++|+|++|
T Consensus 78 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N 157 (597)
T 3oja_B 78 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 157 (597)
T ss_dssp SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC
Confidence 99999999999999999999999999999999999988899999999999999999999777777899999999999999
Q ss_pred cCcccCCcccccccccceecCcCcCCccccCCCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccC
Q 003368 163 SLGGNIPSSLGQLKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSN 242 (825)
Q Consensus 163 ~l~~~~p~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 242 (825)
.+++..|..|+.+++|++| ++++|.+++ ++. ..+++|+.|++++|.+++ +..
T Consensus 158 ~l~~~~~~~~~~l~~L~~L-------------------~L~~N~l~~-~~~---~~l~~L~~L~l~~n~l~~-----l~~ 209 (597)
T 3oja_B 158 NLERIEDDTFQATTSLQNL-------------------QLSSNRLTH-VDL---SLIPSLFHANVSYNLLST-----LAI 209 (597)
T ss_dssp CCCBCCTTTTTTCTTCCEE-------------------ECTTSCCSB-CCG---GGCTTCSEEECCSSCCSE-----EEC
T ss_pred cCCCCChhhhhcCCcCcEE-------------------ECcCCCCCC-cCh---hhhhhhhhhhcccCcccc-----ccC
Confidence 9998888888888888888 666777764 332 267889999999998874 345
Q ss_pred CCCccEEEeecccccCccccCcCCCCCCcEEEcccccCCCCCCCccccccccccCCCCCEEEcccccccccCCCCccccc
Q 003368 243 ASNLQSLEILGNNFFGKLSVNFGDMKSLAYLNVAINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALPHSIVSGS 322 (825)
Q Consensus 243 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 322 (825)
.++|+.|++++|.+....+.. .++|+.|++++|.+.. +..+..+++|+.|+|++|.+++ .
T Consensus 210 ~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--------~~~l~~l~~L~~L~Ls~N~l~~---------~ 269 (597)
T 3oja_B 210 PIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--------TAWLLNYPGLVEVDLSYNELEK---------I 269 (597)
T ss_dssp CTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--------CGGGGGCTTCSEEECCSSCCCE---------E
T ss_pred CchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--------ChhhccCCCCCEEECCCCccCC---------C
Confidence 568899999999886554332 2578888888888865 3457788889999999998886 5
Q ss_pred CCccccCCCCcCEEEcccCcccccCCccccCCCCCCEEEccccccccccCccccCCCCCcEEEcccCccccccCCCCCCC
Q 003368 323 IPSEIGKLVSLYLIEMDHNQFEGKIPEEMSRLQNLQFLNMRHNQLSGEIPSSFGNLSSLVKLILGNNNLSGVIPSSLGNL 402 (825)
Q Consensus 323 ip~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 402 (825)
.|..+..+++|+.|+|++|.+++ +|..+..+++|++|+|++|.+. .+|..+..+++|++|+|++|.+++. | +..+
T Consensus 270 ~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~ 344 (597)
T 3oja_B 270 MYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTH 344 (597)
T ss_dssp ESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTT
T ss_pred CHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhc
Confidence 56778888889999999998886 5666777889999999999888 6777788888999999999988754 2 6677
Q ss_pred CccceeecCCCCCccccc
Q 003368 403 KQLALLHLFQNDLSGAIP 420 (825)
Q Consensus 403 ~~L~~L~L~~N~l~g~ip 420 (825)
++|+.|++++|.+++..+
T Consensus 345 ~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 345 HTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp CCCSEEECCSSCEEHHHH
T ss_pred CCCCEEEeeCCCCCChhH
Confidence 888888998888876533
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.1e-37 Score=349.29 Aligned_cols=304 Identities=25% Similarity=0.262 Sum_probs=262.7
Q ss_pred CcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEc
Q 003368 32 RRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYL 111 (825)
Q Consensus 32 ~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 111 (825)
.+++.|||++|++.+..+..|..+++|++|+|++|+|++..|.+|+++++|++|+|++|+|+...+..|.++++|++|+|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 58999999999999999999999999999999999999999999999999999999999999888888999999999999
Q ss_pred CCCCCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcCCccc
Q 003368 112 GRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSI 191 (825)
Q Consensus 112 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i 191 (825)
++|++++..|..|..+++|++|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L---------- 181 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL---------- 181 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEE----------
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEE----------
Confidence 9999999999999999999999999999999999999999999999999999998777778888888877
Q ss_pred cCCCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccCccccCcCCCCCCc
Q 003368 192 YNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLA 271 (825)
Q Consensus 192 ~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 271 (825)
++++|.+++..+ ..+..+++|+.|++++|.+.+.+|..+....+|+.|+|++|++....+.
T Consensus 182 ---------~l~~n~i~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--------- 242 (477)
T 2id5_A 182 ---------RLRHLNINAIRD-YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL--------- 242 (477)
T ss_dssp ---------EEESCCCCEECT-TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHH---------
T ss_pred ---------eCCCCcCcEeCh-hhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHH---------
Confidence 677777775433 3344889999999999988888877766777899999999988654433
Q ss_pred EEEcccccCCCCCCCccccccccccCCCCCEEEcccccccccCCCCcccccCCccccCCCCcCEEEcccCcccccCCccc
Q 003368 272 YLNVAINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALPHSIVSGSIPSEIGKLVSLYLIEMDHNQFEGKIPEEM 351 (825)
Q Consensus 272 ~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l~~l~~L~~L~L~~N~l~~~~p~~~ 351 (825)
.+..+++|+.|+|++|.+++ ..+..+..+++|+.|+|++|++++..|..|
T Consensus 243 ---------------------~~~~l~~L~~L~Ls~n~l~~---------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 292 (477)
T 2id5_A 243 ---------------------AVRHLVYLRFLNLSYNPIST---------IEGSMLHELLRLQEIQLVGGQLAVVEPYAF 292 (477)
T ss_dssp ---------------------HHTTCTTCCEEECCSSCCCE---------ECTTSCTTCTTCCEEECCSSCCSEECTTTB
T ss_pred ---------------------HhcCccccCeeECCCCcCCc---------cChhhccccccCCEEECCCCccceECHHHh
Confidence 34555666666777776664 233456778888888888898888888899
Q ss_pred cCCCCCCEEEccccccccccCccccCCCCCcEEEcccCccccc
Q 003368 352 SRLQNLQFLNMRHNQLSGEIPSSFGNLSSLVKLILGNNNLSGV 394 (825)
Q Consensus 352 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 394 (825)
.++++|++|+|++|+|++..+..|..+++|++|+|++|.+.+.
T Consensus 293 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 293 RGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp TTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred cCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 9999999999999999977777888899999999999998753
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3e-35 Score=326.11 Aligned_cols=310 Identities=15% Similarity=0.183 Sum_probs=236.5
Q ss_pred CcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEc
Q 003368 32 RRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYL 111 (825)
Q Consensus 32 ~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 111 (825)
.+++.|+++++.+....+..+..+++|++|+|++|++++..+.+|+.+++|++|+|++|++++..|..|..+++|++|+|
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 57889999999987665556889999999999999999888889999999999999999999999999999999999999
Q ss_pred CCCCCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcCCccc
Q 003368 112 GRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSI 191 (825)
Q Consensus 112 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i 191 (825)
++|+++...+..|.++++|++|+|++|++++..|..|.++++|++|++++|++++. .+..+++|+.|+++++....+
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc
Confidence 99999976666789999999999999999998899999999999999999999864 356778888887776666666
Q ss_pred cCCCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccCccccCcCCCCCCc
Q 003368 192 YNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLA 271 (825)
Q Consensus 192 ~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 271 (825)
.....++.|++++|.++. +|.. ..++|+.|++++|.+++. ..+..+++|+.|+|++|.+.+..+..
T Consensus 202 ~~~~~L~~L~l~~n~l~~-~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~-------- 267 (390)
T 3o6n_A 202 AIPIAVEELDASHNSINV-VRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP-------- 267 (390)
T ss_dssp ECCSSCSEEECCSSCCCE-EECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG--------
T ss_pred CCCCcceEEECCCCeeee-cccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH--------
Confidence 656666666666666653 3332 235666666666666543 35566666666666666665554444
Q ss_pred EEEcccccCCCCCCCccccccccccCCCCCEEEcccccccccCCCCcccccCCccccCCCCcCEEEcccCcccccCCccc
Q 003368 272 YLNVAINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALPHSIVSGSIPSEIGKLVSLYLIEMDHNQFEGKIPEEM 351 (825)
Q Consensus 272 ~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l~~l~~L~~L~L~~N~l~~~~p~~~ 351 (825)
+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|+++ .+|..+
T Consensus 268 ----------------------~~~l~~L~~L~L~~n~l~----------~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~ 314 (390)
T 3o6n_A 268 ----------------------FVKMQRLERLYISNNRLV----------ALNLYGQPIPTLKVLDLSHNHLL-HVERNQ 314 (390)
T ss_dssp ----------------------GTTCSSCCEEECCSSCCC----------EEECSSSCCTTCCEEECCSSCCC-CCGGGH
T ss_pred ----------------------ccccccCCEEECCCCcCc----------ccCcccCCCCCCCEEECCCCcce-ecCccc
Confidence 445555666666666665 34444556667777777777776 456666
Q ss_pred cCCCCCCEEEccccccccccCccccCCCCCcEEEcccCccccc
Q 003368 352 SRLQNLQFLNMRHNQLSGEIPSSFGNLSSLVKLILGNNNLSGV 394 (825)
Q Consensus 352 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 394 (825)
..+++|++|+|++|++... | +..+++|++|++++|.+.+.
T Consensus 315 ~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 315 PQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp HHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred cccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence 7777777777777777643 3 56677788888888877653
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1e-34 Score=339.59 Aligned_cols=310 Identities=15% Similarity=0.180 Sum_probs=245.3
Q ss_pred CcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEc
Q 003368 32 RRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYL 111 (825)
Q Consensus 32 ~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 111 (825)
.+++.++++++.+....+..+..+++|++|+|++|.|++..|..|+.+++|++|+|++|.|++..|..|+++++|++|+|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 46788999999987766667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcCCccc
Q 003368 112 GRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSI 191 (825)
Q Consensus 112 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i 191 (825)
++|+|++..+..|.++++|++|+|++|.+++..|..|+++++|++|+|++|++++.. ++.+++|+.|+++++....+
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l 207 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL 207 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEE
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccc
Confidence 999999877777899999999999999999999999999999999999999998652 56678888887777766666
Q ss_pred cCCCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccCccccCcCCCCCCc
Q 003368 192 YNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLA 271 (825)
Q Consensus 192 ~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 271 (825)
.....|+.|++++|.++. +|... .++|+.|+|++|.+++ +..+..+++|+.|+|++|.+.+..|.
T Consensus 208 ~~~~~L~~L~ls~n~l~~-~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~--------- 272 (597)
T 3oja_B 208 AIPIAVEELDASHNSINV-VRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYH--------- 272 (597)
T ss_dssp ECCTTCSEEECCSSCCCE-EECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESG---------
T ss_pred cCCchhheeeccCCcccc-ccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHH---------
Confidence 666667777777777652 33222 2566777777776665 34566666666666666666655544
Q ss_pred EEEcccccCCCCCCCccccccccccCCCCCEEEcccccccccCCCCcccccCCccccCCCCcCEEEcccCcccccCCccc
Q 003368 272 YLNVAINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALPHSIVSGSIPSEIGKLVSLYLIEMDHNQFEGKIPEEM 351 (825)
Q Consensus 272 ~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l~~l~~L~~L~L~~N~l~~~~p~~~ 351 (825)
.+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.++ .+|..+
T Consensus 273 ---------------------~~~~l~~L~~L~Ls~N~l~----------~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~ 320 (597)
T 3oja_B 273 ---------------------PFVKMQRLERLYISNNRLV----------ALNLYGQPIPTLKVLDLSHNHLL-HVERNQ 320 (597)
T ss_dssp ---------------------GGTTCSSCCEEECTTSCCC----------EEECSSSCCTTCCEEECCSSCCC-CCGGGH
T ss_pred ---------------------HhcCccCCCEEECCCCCCC----------CCCcccccCCCCcEEECCCCCCC-ccCccc
Confidence 4455556666666666665 34555566777888888888887 566777
Q ss_pred cCCCCCCEEEccccccccccCccccCCCCCcEEEcccCccccc
Q 003368 352 SRLQNLQFLNMRHNQLSGEIPSSFGNLSSLVKLILGNNNLSGV 394 (825)
Q Consensus 352 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 394 (825)
..+++|++|+|++|.+.+. | +..+++|++|++++|.+.+.
T Consensus 321 ~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 321 PQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp HHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred ccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence 7788888888888888744 3 56678888888888888754
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=9.9e-34 Score=308.73 Aligned_cols=306 Identities=25% Similarity=0.399 Sum_probs=187.3
Q ss_pred CCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccce
Q 003368 53 GNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKE 132 (825)
Q Consensus 53 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 132 (825)
..+++|++|++++|.++. +| .|..+++|++|++++|++++..+ |..+++|++|+|++|+++. + .+|..+++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~ 114 (347)
T 4fmz_A 41 EELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRE 114 (347)
T ss_dssp HHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSE
T ss_pred hhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCE
Confidence 355666666666666653 33 25666666666666666664333 6666666666666666664 2 24666666666
Q ss_pred eeccccccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcCCccccCCCCCceeecCCccccccCC
Q 003368 133 LAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLP 212 (825)
Q Consensus 133 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp 212 (825)
|++++|++++..+ +..+++|+.|++++|.....++ .+..+++|++| ++++|.+.+ ++
T Consensus 115 L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L-------------------~l~~~~~~~-~~ 171 (347)
T 4fmz_A 115 LYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYL-------------------TVTESKVKD-VT 171 (347)
T ss_dssp EECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEE-------------------ECCSSCCCC-CG
T ss_pred EECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEE-------------------EecCCCcCC-ch
Confidence 6666666664332 5666666666666664443322 24444444444 444444442 22
Q ss_pred chhhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccCccccCcCCCCCCcEEEcccccCCCCCCCcccccc
Q 003368 213 PSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLAYLNVAINNLGSGESDEMSFIH 292 (825)
Q Consensus 213 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~ 292 (825)
. +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+....
T Consensus 172 ~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~-------- 237 (347)
T 4fmz_A 172 P--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS-------- 237 (347)
T ss_dssp G--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--------
T ss_pred h--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc--------
Confidence 2 2255666666666666654332 5566666666666666655443 555666666666666554421
Q ss_pred ccccCCCCCEEEcccccccccCCCCcccccCCccccCCCCcCEEEcccCcccccCCccccCCCCCCEEEccccccccccC
Q 003368 293 SLANCSNLSFLNLVANQFKGALPHSIVSGSIPSEIGKLVSLYLIEMDHNQFEGKIPEEMSRLQNLQFLNMRHNQLSGEIP 372 (825)
Q Consensus 293 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 372 (825)
.+..+++|+.|++++|.+++ + +.+..+++|+.|++++|++++. +.+..+++|++|++++|++.+..|
T Consensus 238 ~~~~l~~L~~L~l~~n~l~~----------~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~ 304 (347)
T 4fmz_A 238 PLANLSQLTWLEIGTNQISD----------I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDM 304 (347)
T ss_dssp GGTTCTTCCEEECCSSCCCC----------C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGH
T ss_pred chhcCCCCCEEECCCCccCC----------C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcCh
Confidence 15566777777777777763 2 2466677777777777777753 357777888888888888877777
Q ss_pred ccccCCCCCcEEEcccCccccccCCCCCCCCccceeecCCCCCc
Q 003368 373 SSFGNLSSLVKLILGNNNLSGVIPSSLGNLKQLALLHLFQNDLS 416 (825)
Q Consensus 373 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 416 (825)
..|..+++|++|++++|++++..| +..+++|+.|++++|.++
T Consensus 305 ~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 305 EVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 777778888888888888876655 777778888888877764
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.5e-33 Score=307.25 Aligned_cols=304 Identities=22% Similarity=0.345 Sum_probs=257.9
Q ss_pred CCcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEE
Q 003368 31 HRRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLY 110 (825)
Q Consensus 31 ~~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 110 (825)
..+++.|+++++++... + .+..+++|++|++++|++++. |. |..+++|++|+|++|.++.. ..|..+++|++|+
T Consensus 43 l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~ 116 (347)
T 4fmz_A 43 LESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELY 116 (347)
T ss_dssp HTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEE
T ss_pred cccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEE
Confidence 46899999999998653 3 488999999999999999954 44 99999999999999999864 3699999999999
Q ss_pred cCCCCCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcCCcc
Q 003368 111 LGRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPS 190 (825)
Q Consensus 111 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~ 190 (825)
|++|++++. +. +..+++|++|++++|.....++ .+..+++|++|++++|.+++..+ +..+++|++|
T Consensus 117 l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L--------- 182 (347)
T 4fmz_A 117 LNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSL--------- 182 (347)
T ss_dssp CTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEE---------
T ss_pred CcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEE---------
Confidence 999999964 43 8999999999999997664544 48999999999999999985544 6677777776
Q ss_pred ccCCCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccCccccCcCCCCCC
Q 003368 191 IYNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGKLSVNFGDMKSL 270 (825)
Q Consensus 191 i~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 270 (825)
++++|.+++ ++. ...+++|+.|++++|.+++..+ +..+++|++|++++|++.+..+ +..+++|
T Consensus 183 ----------~l~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L 245 (347)
T 4fmz_A 183 ----------SLNYNQIED-ISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQL 245 (347)
T ss_dssp ----------ECTTSCCCC-CGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred ----------EccCCcccc-ccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCC
Confidence 667777763 444 3378999999999999987655 8889999999999999987665 8899999
Q ss_pred cEEEcccccCCCCCCCccccccccccCCCCCEEEcccccccccCCCCcccccCCccccCCCCcCEEEcccCcccccCCcc
Q 003368 271 AYLNVAINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALPHSIVSGSIPSEIGKLVSLYLIEMDHNQFEGKIPEE 350 (825)
Q Consensus 271 ~~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l~~l~~L~~L~L~~N~l~~~~p~~ 350 (825)
++|++++|.+... ..+..+++|++|++++|++++ + +.+..+++|+.|++++|++++..|..
T Consensus 246 ~~L~l~~n~l~~~--------~~~~~l~~L~~L~l~~n~l~~----------~-~~~~~l~~L~~L~L~~n~l~~~~~~~ 306 (347)
T 4fmz_A 246 TWLEIGTNQISDI--------NAVKDLTKLKMLNVGSNQISD----------I-SVLNNLSQLNSLFLNNNQLGNEDMEV 306 (347)
T ss_dssp CEEECCSSCCCCC--------GGGTTCTTCCEEECCSSCCCC----------C-GGGGGCTTCSEEECCSSCCCGGGHHH
T ss_pred CEEECCCCccCCC--------hhHhcCCCcCEEEccCCccCC----------C-hhhcCCCCCCEEECcCCcCCCcChhH
Confidence 9999999988763 357788999999999999984 4 35788999999999999999999999
Q ss_pred ccCCCCCCEEEccccccccccCccccCCCCCcEEEcccCccc
Q 003368 351 MSRLQNLQFLNMRHNQLSGEIPSSFGNLSSLVKLILGNNNLS 392 (825)
Q Consensus 351 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 392 (825)
++.+++|++|++++|++++..| +..+++|++|++++|.|+
T Consensus 307 l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 307 IGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 9999999999999999997666 888999999999999986
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=8.3e-34 Score=304.14 Aligned_cols=257 Identities=32% Similarity=0.503 Sum_probs=223.0
Q ss_pred CCCCEEEcccccccccCCCCcccccCCccccCCCCcCEEEccc-CcccccCCccccCCCCCCEEEccccccccccCcccc
Q 003368 298 SNLSFLNLVANQFKGALPHSIVSGSIPSEIGKLVSLYLIEMDH-NQFEGKIPEEMSRLQNLQFLNMRHNQLSGEIPSSFG 376 (825)
Q Consensus 298 ~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 376 (825)
.+++.|+|++|.++|.. .+|..+.++++|++|++++ |.+.+.+|..|+++++|++|+|++|++.+.+|..|.
T Consensus 50 ~~l~~L~L~~~~l~~~~-------~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 122 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPY-------PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122 (313)
T ss_dssp CCEEEEEEECCCCSSCE-------ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG
T ss_pred ceEEEEECCCCCccCCc-------ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh
Confidence 46788888888887410 3667788888899999984 888888888888999999999999999888888888
Q ss_pred CCCCCcEEEcccCccccccCCCCCCCCccceeecCCCCCccccchhhhcccccccccccCCCccccCCCccccccccccE
Q 003368 377 NLSSLVKLILGNNNLSGVIPSSLGNLKQLALLHLFQNDLSGAIPEEIFNISHMSDSLNFARNHLVGSIPPKIGNLKVLRM 456 (825)
Q Consensus 377 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~ip~~~~~~~~l~~~l~l~~N~l~~~~p~~~~~l~~L~~ 456 (825)
.+++|++|+|++|++++.+|..++.+++|++|++++|+++|.+|..++.+...++.|++++|++++.+|..++.++ |+.
T Consensus 123 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~ 201 (313)
T 1ogq_A 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAF 201 (313)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSE
T ss_pred CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccE
Confidence 8999999999999998888888888999999999999998888888888874447889999999988999998887 999
Q ss_pred EeecCceecccCCccccCCCCCCEEEccCCcCCCCCCccccCCCCCCEEECCCCccccccCcccccc-cCceeeCCCCcc
Q 003368 457 FVVSSNNLSGEIPSEIGSCFYLQEIYMAENFFRGSIPSSLVSLKDLREIDLSQNNLSGKIPISLERL-PLEYLNLSFNDL 535 (825)
Q Consensus 457 L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~~L~~Ldls~N~l~~~~p~~~~~l-~L~~l~ls~N~l 535 (825)
|++++|++++.+|..++.+++|+.|++++|.+++.+|. +..+++|++||+++|++++.+|..+..+ .|++|++++|++
T Consensus 202 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred EECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence 99999999999999999999999999999999877665 7888999999999999999999988888 699999999999
Q ss_pred eecCCCCCccCccccccccCCCCCCCCCC
Q 003368 536 EGQVPTKGIFANASAISVSGNSNRLCGGI 564 (825)
Q Consensus 536 ~g~~p~~~~~~~~~~~~~~~n~~~lc~~~ 564 (825)
+|.+|..+.+.++....+.+|+ .+||.+
T Consensus 281 ~~~ip~~~~l~~L~~l~l~~N~-~lc~~p 308 (313)
T 1ogq_A 281 CGEIPQGGNLQRFDVSAYANNK-CLCGSP 308 (313)
T ss_dssp EEECCCSTTGGGSCGGGTCSSS-EEESTT
T ss_pred cccCCCCccccccChHHhcCCC-CccCCC
Confidence 9999988888888889999998 889864
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=4.9e-33 Score=301.17 Aligned_cols=286 Identities=20% Similarity=0.253 Sum_probs=188.1
Q ss_pred EEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCC
Q 003368 34 VTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGR 113 (825)
Q Consensus 34 l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 113 (825)
++.++++++++. .+|..+. ++|++|+|++|++++..|.+|.++++|++|+|++|+|++..|..|..+++|++|+|++
T Consensus 35 l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 35 LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred CCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 456777777775 5666553 6888899999988877788888888899999999988888888888888899999998
Q ss_pred CCCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcc--cCCcccccccccceecCcCcCCccc
Q 003368 114 NKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGG--NIPSSLGQLKELKSLGLGGTIPPSI 191 (825)
Q Consensus 114 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~~~p~~i 191 (825)
|+++ .+|..+. ++|++|++++|++++..+..|.++++|+.|++++|.++. ..|..|..+ +|+.|
T Consensus 112 n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L---------- 177 (332)
T 2ft3_A 112 NHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYL---------- 177 (332)
T ss_dssp SCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCC----------
T ss_pred CcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEE----------
Confidence 8888 4554443 788888888888887777778888888888888888863 556666555 55555
Q ss_pred cCCCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccCccccCcCCCCCCc
Q 003368 192 YNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLA 271 (825)
Q Consensus 192 ~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 271 (825)
++++|+++ .+|..++ ++|++|+|++|.+++..+..|.++++|+.|+|++|++.+..+..+
T Consensus 178 ---------~l~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~------- 237 (332)
T 2ft3_A 178 ---------RISEAKLT-GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL------- 237 (332)
T ss_dssp ---------BCCSSBCS-SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG-------
T ss_pred ---------ECcCCCCC-ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHh-------
Confidence 66667776 3665543 577777777777777666677777777777777776655443333
Q ss_pred EEEcccccCCCCCCCccccccccccCCCCCEEEcccccccccCCCCcccccCCccccCCCCcCEEEcccCcccccCCccc
Q 003368 272 YLNVAINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALPHSIVSGSIPSEIGKLVSLYLIEMDHNQFEGKIPEEM 351 (825)
Q Consensus 272 ~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l~~l~~L~~L~L~~N~l~~~~p~~~ 351 (825)
..+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..|
T Consensus 238 -----------------------~~l~~L~~L~L~~N~l~----------~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 238 -----------------------SFLPTLRELHLDNNKLS----------RVPAGLPDLKLLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp -----------------------GGCTTCCEEECCSSCCC----------BCCTTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred -----------------------hCCCCCCEEECCCCcCe----------ecChhhhcCccCCEEECCCCCCCccChhHc
Confidence 33444444455555444 344444455555555555555554444433
Q ss_pred cC------CCCCCEEEccccccc--cccCccccCCCCCcEEEcccC
Q 003368 352 SR------LQNLQFLNMRHNQLS--GEIPSSFGNLSSLVKLILGNN 389 (825)
Q Consensus 352 ~~------l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~Ls~N 389 (825)
.. ..+|+.|++++|.+. +..|..|..+++|+.+++++|
T Consensus 285 ~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 285 CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred cccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 32 234455555555544 334444444555555555444
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=9.7e-33 Score=298.62 Aligned_cols=287 Identities=20% Similarity=0.285 Sum_probs=183.0
Q ss_pred EEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCC
Q 003368 34 VTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGR 113 (825)
Q Consensus 34 l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 113 (825)
++.++++++++. .+|..+. +.|++|+|++|+|++..+..|+++++|++|+|++|+|++..|..|..+++|++|+|++
T Consensus 33 l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 33 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 445666667665 4555543 6788889998888877777888888899999988888888888888888888888888
Q ss_pred CCCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcc--cCCcccccccccceecCcCcCCccc
Q 003368 114 NKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGG--NIPSSLGQLKELKSLGLGGTIPPSI 191 (825)
Q Consensus 114 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~~~p~~i 191 (825)
|+++ .+|..+. ++|++|++++|++++..+..|.++++|+.|++++|+++. ..+..|.++++|++|
T Consensus 110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L---------- 176 (330)
T 1xku_A 110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI---------- 176 (330)
T ss_dssp SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE----------
T ss_pred CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEE----------
Confidence 8888 4555443 688888888888887777778888888888888888853 555556666655555
Q ss_pred cCCCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccCccccCcCCCCCCc
Q 003368 192 YNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLA 271 (825)
Q Consensus 192 ~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 271 (825)
++++|.++ .+|..+. ++|++|++++|++++..|..|..+++|+.|+|++|++.+..+..
T Consensus 177 ---------~l~~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-------- 235 (330)
T 1xku_A 177 ---------RIADTNIT-TIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS-------- 235 (330)
T ss_dssp ---------ECCSSCCC-SCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT--------
T ss_pred ---------ECCCCccc-cCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhh--------
Confidence 55556665 3554432 56777777777776666666666666666666666665544333
Q ss_pred EEEcccccCCCCCCCccccccccccCCCCCEEEcccccccccCCCCcccccCCccccCCCCcCEEEcccCcccccCCccc
Q 003368 272 YLNVAINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALPHSIVSGSIPSEIGKLVSLYLIEMDHNQFEGKIPEEM 351 (825)
Q Consensus 272 ~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l~~l~~L~~L~L~~N~l~~~~p~~~ 351 (825)
+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..|
T Consensus 236 ----------------------~~~l~~L~~L~L~~N~l~----------~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 236 ----------------------LANTPHLRELHLNNNKLV----------KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp ----------------------GGGSTTCCEEECCSSCCS----------SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred ----------------------ccCCCCCCEEECCCCcCc----------cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence 333444445555555444 344444455555555555555554444433
Q ss_pred cC------CCCCCEEEcccccccc--ccCccccCCCCCcEEEcccC
Q 003368 352 SR------LQNLQFLNMRHNQLSG--EIPSSFGNLSSLVKLILGNN 389 (825)
Q Consensus 352 ~~------l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N 389 (825)
.. ...|+.|++++|.+.. ..|..|..+.+++.++|++|
T Consensus 284 ~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 32 2344455555554431 23344444444444444444
No 45
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=100.00 E-value=3.6e-34 Score=305.62 Aligned_cols=161 Identities=25% Similarity=0.348 Sum_probs=145.2
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCeeeE
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFKAL 722 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~~l 722 (825)
+.|+..+.||+|+||+||+|+++.+|+.||||++........+.+.+|++++++++|||||++++++ .+++..|+
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~-----~~~~~~~i 148 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSY-----LVGDELWV 148 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEE-----EETTEEEE
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEE-----EECCEEEE
Confidence 4588899999999999999999999999999999876555567789999999999999999999984 45778999
Q ss_pred EEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcEEEc
Q 003368 723 VYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTAHVG 802 (825)
Q Consensus 723 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ki~ 802 (825)
|||||++|+|.+++.. ..+++.++..|+.||+.||+|||+. +||||||||+|||++.++.+||+
T Consensus 149 vmEy~~gg~L~~~l~~-------------~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~ 212 (346)
T 4fih_A 149 VMEFLEGGALTDIVTH-------------TRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLS 212 (346)
T ss_dssp EECCCTTEEHHHHHHH-------------SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEEC
T ss_pred EEeCCCCCcHHHHHHc-------------CCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEECCCCCEEEe
Confidence 9999999999998842 3589999999999999999999986 99999999999999999999999
Q ss_pred ccCcccccccCCCCCccccccC
Q 003368 803 DFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 803 DFGla~~~~~~~~~~~~~~gt~ 824 (825)
|||+|+..........+.+||+
T Consensus 213 DFGla~~~~~~~~~~~~~~GTp 234 (346)
T 4fih_A 213 DFGFCAQVSKEVPRRKSLVGTP 234 (346)
T ss_dssp CCTTCEECCSSSCCBCCCCSCG
T ss_pred cCcCceecCCCCCcccccccCc
Confidence 9999998877666677889997
No 46
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=100.00 E-value=1.6e-33 Score=301.33 Aligned_cols=174 Identities=25% Similarity=0.399 Sum_probs=133.0
Q ss_pred ccccccceeccCCeeEEEEEEEc-----CCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCC
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFD-----RDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGN 717 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~-----~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 717 (825)
++|...+.||+|+||+||+|+++ .+++.||||+++.......++|.+|++++++++|||||+++|+|.. +
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~-----~ 115 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTE-----G 115 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-----S
T ss_pred HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEE-----C
Confidence 45777889999999999999974 3588999999987666667889999999999999999999999753 5
Q ss_pred CeeeEEEEccCCCChhhhccCCCCCCCc---ccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeec
Q 003368 718 DFKALVYQYMPNGSLENWLHPDAIPQTD---EENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLD 794 (825)
Q Consensus 718 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~---~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~ 794 (825)
+..++|||||++|+|.++++........ .......+++|.++++|+.|||+||+|||+. +||||||||+|||++
T Consensus 116 ~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLKp~NILl~ 192 (329)
T 4aoj_A 116 RPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL---HFVHRDLATRNCLVG 192 (329)
T ss_dssp SSEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEE
T ss_pred CEEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecccccHhhEEEC
Confidence 6789999999999999999754221110 0111235799999999999999999999985 899999999999999
Q ss_pred CCCcEEEcccCcccccccCCCC--CccccccC
Q 003368 795 NNLTAHVGDFGLARLRQEVPNN--QSSSVGDL 824 (825)
Q Consensus 795 ~~~~~ki~DFGla~~~~~~~~~--~~~~~gt~ 824 (825)
+++.+||+|||+||........ ....+||+
T Consensus 193 ~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~ 224 (329)
T 4aoj_A 193 QGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPI 224 (329)
T ss_dssp TTTEEEECCCC----------------CCCCG
T ss_pred CCCcEEEcccccceeccCCCcceecCcccccc
Confidence 9999999999999987554322 23446664
No 47
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=100.00 E-value=1.3e-33 Score=296.67 Aligned_cols=164 Identities=26% Similarity=0.390 Sum_probs=144.4
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc---chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL---QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGND 718 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~---~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~ 718 (825)
.++|+..++||+|+||+||+|+.+.+|+.||||++.+.. ....+.+.+|++++++++|||||+++++ |++++
T Consensus 31 ~~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~-----~~~~~ 105 (311)
T 4aw0_A 31 PEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFT-----FQDDE 105 (311)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEE-----EECSS
T ss_pred ccccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEE-----EEeCC
Confidence 367999999999999999999999999999999997542 2345679999999999999999999998 56678
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..|+||||++||+|.+++.. ...+++.++..|+.||+.||+|||+. +||||||||+|||+++++.
T Consensus 106 ~~yivmEy~~gG~L~~~i~~------------~~~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDlKPeNILl~~~g~ 170 (311)
T 4aw0_A 106 KLYFGLSYAKNGELLKYIRK------------IGSFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMH 170 (311)
T ss_dssp EEEEEECCCTTEEHHHHHHH------------HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSC
T ss_pred EEEEEEecCCCCCHHHHHHH------------cCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEEcCCCC
Confidence 89999999999999999942 24689999999999999999999986 9999999999999999999
Q ss_pred EEEcccCcccccccCC--CCCccccccCC
Q 003368 799 AHVGDFGLARLRQEVP--NNQSSSVGDLE 825 (825)
Q Consensus 799 ~ki~DFGla~~~~~~~--~~~~~~~gt~~ 825 (825)
+||+|||+|+.+.... ....+.+||+.
T Consensus 171 vKl~DFGla~~~~~~~~~~~~~~~~GTp~ 199 (311)
T 4aw0_A 171 IQITDFGTAKVLSPESKQARANSFVGTAQ 199 (311)
T ss_dssp EEECCCTTCEECCTTTTCCCBCCCCSCGG
T ss_pred EEEEEcCCceecCCCCCcccccCcccCcc
Confidence 9999999999875443 24567789973
No 48
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=100.00 E-value=8.3e-34 Score=299.21 Aligned_cols=164 Identities=28% Similarity=0.461 Sum_probs=134.3
Q ss_pred ccccccceeccCCeeEEEEEEEc-----CCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCC
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFD-----RDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGN 717 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~-----~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 717 (825)
++|...+.||+|+||+||+|++. .+|+.||||+++.......++|.+|++++++++|||||+++|+|.. +
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~-----~ 87 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVE-----G 87 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-----S
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEee-----C
Confidence 46778899999999999999974 3578999999987666667889999999999999999999999753 5
Q ss_pred CeeeEEEEccCCCChhhhccCCCCCC-CcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCC
Q 003368 718 DFKALVYQYMPNGSLENWLHPDAIPQ-TDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNN 796 (825)
Q Consensus 718 ~~~~lv~e~~~~gsL~~~l~~~~~~~-~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~ 796 (825)
+..++|||||++|+|.++|+...... ..........++|.++++|+.|||+||+|||+. +||||||||+|||++++
T Consensus 88 ~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDlKp~NILl~~~ 164 (299)
T 4asz_A 88 DPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGEN 164 (299)
T ss_dssp SSEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGG
T ss_pred CEEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCccCHhhEEECCC
Confidence 67899999999999999996431000 000011234799999999999999999999985 89999999999999999
Q ss_pred CcEEEcccCcccccccCC
Q 003368 797 LTAHVGDFGLARLRQEVP 814 (825)
Q Consensus 797 ~~~ki~DFGla~~~~~~~ 814 (825)
+.+||+|||+|+......
T Consensus 165 ~~~Ki~DFGla~~~~~~~ 182 (299)
T 4asz_A 165 LLVKIGDFGMSRDVYSTD 182 (299)
T ss_dssp GCEEECCCSCHHHHTGGG
T ss_pred CcEEECCcccceecCCCC
Confidence 999999999999775543
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1.7e-32 Score=296.97 Aligned_cols=289 Identities=21% Similarity=0.280 Sum_probs=190.5
Q ss_pred CCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeec
Q 003368 56 SFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAI 135 (825)
Q Consensus 56 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 135 (825)
.+++.+++++|.++ .+|..+. ++|+.|+|++|.|++..|..|.++++|++|+|++|+|++..|.+|.++++|++|+|
T Consensus 33 c~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 36889999999998 6777664 68999999999999888888999999999999999999888888999999999999
Q ss_pred cccccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcCCccccCCCCCceeecCCccccc--cCCc
Q 003368 136 QENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHG--SLPP 213 (825)
Q Consensus 136 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~--~lp~ 213 (825)
++|+++ .+|..+. ++|++|++++|++++..+..|.++++|+.| ++++|.++. ..|.
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L-------------------~l~~n~l~~~~~~~~ 167 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCI-------------------EMGGNPLENSGFEPG 167 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEE-------------------ECCSCCCBGGGSCTT
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEE-------------------ECCCCccccCCCCcc
Confidence 999988 4555444 788899999888886655566666666665 445555531 2222
Q ss_pred hhhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccCccccCcCCCCCCcEEEcccccCCCCCCCccccccc
Q 003368 214 SLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLAYLNVAINNLGSGESDEMSFIHS 293 (825)
Q Consensus 214 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~ 293 (825)
.+. .+ +|+.|++++|++++ +|..+. ++|++|+|++|++.+.. +..
T Consensus 168 ~~~-~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~------------------------------~~~ 212 (332)
T 2ft3_A 168 AFD-GL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIE------------------------------LED 212 (332)
T ss_dssp SSC-SC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCC------------------------------TTS
T ss_pred ccc-CC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccC------------------------------HHH
Confidence 222 33 55555555555554 222221 34444444444443322 223
Q ss_pred cccCCCCCEEEcccccccccCCCCcccccCCccccCCCCcCEEEcccCcccccCCccccCCCCCCEEEccccccccccCc
Q 003368 294 LANCSNLSFLNLVANQFKGALPHSIVSGSIPSEIGKLVSLYLIEMDHNQFEGKIPEEMSRLQNLQFLNMRHNQLSGEIPS 373 (825)
Q Consensus 294 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 373 (825)
+..+++|+.|++++|++++ ..|..+..+++|+.|++++|+++ .+|..+..+++|++|++++|++++..+.
T Consensus 213 l~~l~~L~~L~L~~N~l~~---------~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~ 282 (332)
T 2ft3_A 213 LLRYSKLYRLGLGHNQIRM---------IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVN 282 (332)
T ss_dssp STTCTTCSCCBCCSSCCCC---------CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTT
T ss_pred hcCCCCCCEEECCCCcCCc---------CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChh
Confidence 4455566666666666653 22335666777777777777776 5666677777777777777777765555
Q ss_pred cccCC------CCCcEEEcccCccc--cccCCCCCCCCccceeecCCCC
Q 003368 374 SFGNL------SSLVKLILGNNNLS--GVIPSSLGNLKQLALLHLFQND 414 (825)
Q Consensus 374 ~~~~l------~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~L~~N~ 414 (825)
.|... .+|+.|++++|.+. +..|..|..+++|+.+++++|+
T Consensus 283 ~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 283 DFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred HccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 55442 45667777777665 4555666667777777766654
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=6.6e-32 Score=292.07 Aligned_cols=120 Identities=22% Similarity=0.319 Sum_probs=92.2
Q ss_pred CCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeec
Q 003368 56 SFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAI 135 (825)
Q Consensus 56 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 135 (825)
.+++.++++++.++ .+|..+. ++|++|+|++|+|++..+..|.++++|++|+|++|++++..|.+|..+++|++|+|
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 46788888888888 5666654 57888888888888777778888888888888888888877888888888888888
Q ss_pred cccccccccCccCCCCCCCCEEEcccCcCcccCCccccccccccee
Q 003368 136 QENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSL 181 (825)
Q Consensus 136 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 181 (825)
++|+++ .+|..+. ++|+.|++++|++++..+..|.++++|+.|
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 150 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVV 150 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEE
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEE
Confidence 888888 4454443 678888888888876555555555555555
No 51
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=100.00 E-value=6.8e-34 Score=304.00 Aligned_cols=166 Identities=23% Similarity=0.340 Sum_probs=137.7
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc--chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCe
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL--QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDF 719 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~ 719 (825)
.++|+..+.||+|+||+||+|+++.+|+.||||++.... ....+.|.+|++++++++|||||++++++ ++++.
T Consensus 23 me~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~-----~~~~~ 97 (350)
T 4b9d_A 23 MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESF-----EENGS 97 (350)
T ss_dssp CCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-----EETTE
T ss_pred ccceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEE-----EECCE
Confidence 467999999999999999999999999999999997653 23456799999999999999999999984 45778
Q ss_pred eeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcE
Q 003368 720 KALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTA 799 (825)
Q Consensus 720 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ 799 (825)
.|+|||||+||+|.+++... ....+++.++..|+.||+.||+|||+. +||||||||+|||+++++.+
T Consensus 98 ~yiVmEy~~gg~L~~~i~~~----------~~~~~~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~v 164 (350)
T 4b9d_A 98 LYIVMDYCEGGDLFKRINAQ----------KGVLFQEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTV 164 (350)
T ss_dssp EEEEEECCTTCBHHHHHHHT----------TTCCCCHHHHHHHHHHHHHHHHHHHHT---TCEETTCCGGGEEECTTCCE
T ss_pred EEEEEeCCCCCcHHHHHHHc----------CCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHHHEEECCCCCE
Confidence 99999999999999999532 223578889999999999999999985 99999999999999999999
Q ss_pred EEcccCcccccccCCCCCccccccCC
Q 003368 800 HVGDFGLARLRQEVPNNQSSSVGDLE 825 (825)
Q Consensus 800 ki~DFGla~~~~~~~~~~~~~~gt~~ 825 (825)
||+|||+|+..........+.+||+.
T Consensus 165 Kl~DFGla~~~~~~~~~~~~~~GT~~ 190 (350)
T 4b9d_A 165 QLGDFGIARVLNSTVELARACIGTPY 190 (350)
T ss_dssp EECSTTEESCCCHHHHHHHHHHSCCT
T ss_pred EEcccccceeecCCcccccccCCCcc
Confidence 99999999987654333456678873
No 52
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=100.00 E-value=2.1e-33 Score=307.09 Aligned_cols=162 Identities=25% Similarity=0.340 Sum_probs=146.1
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCeeeE
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFKAL 722 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~~l 722 (825)
+.|+..+.||+|+||+||+|+++.+|+.||||++........+.+.+|+++|++++|||||++++++ .+++..|+
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~-----~~~~~~~i 225 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSY-----LVGDELWV 225 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEE-----EETTEEEE
T ss_pred HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEE-----EECCEEEE
Confidence 5689999999999999999999999999999999876655667799999999999999999999985 44678999
Q ss_pred EEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcEEEc
Q 003368 723 VYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTAHVG 802 (825)
Q Consensus 723 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ki~ 802 (825)
|||||+||+|.+++.. ..+++.++..|+.||+.||+|||+. +||||||||+|||++.++.+||+
T Consensus 226 VmEy~~gG~L~~~i~~-------------~~l~e~~~~~~~~qil~aL~ylH~~---~IiHRDiKp~NILl~~~g~vKl~ 289 (423)
T 4fie_A 226 VMEFLEGGALTDIVTH-------------TRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLS 289 (423)
T ss_dssp EEECCTTEEHHHHHHH-------------SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSTTTEEECTTCCEEEC
T ss_pred EEeCCCCCcHHHHHhc-------------cCCCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEe
Confidence 9999999999998842 3588999999999999999999986 99999999999999999999999
Q ss_pred ccCcccccccCCCCCccccccCC
Q 003368 803 DFGLARLRQEVPNNQSSSVGDLE 825 (825)
Q Consensus 803 DFGla~~~~~~~~~~~~~~gt~~ 825 (825)
|||+|+.+........+.+||+.
T Consensus 290 DFGla~~~~~~~~~~~~~~GTp~ 312 (423)
T 4fie_A 290 DFGFCAQVSKEVPRRKSLVGTPY 312 (423)
T ss_dssp CCTTCEECCSSCCCBCCCEECTT
T ss_pred cCccceECCCCCccccccccCcC
Confidence 99999988776666778899973
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=2.1e-33 Score=302.80 Aligned_cols=254 Identities=18% Similarity=0.290 Sum_probs=212.3
Q ss_pred ccCCcccccCC----CCCCCCceeeceeec--------CCCCcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccc
Q 003368 3 TQYPEGVLNSW----NDSHHFCDWEGITCS--------PRHRRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQG 70 (825)
Q Consensus 3 ~~~~~~~~~~w----~~~~~~C~~~g~~c~--------~~~~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 70 (825)
+.||.+++.+| ....++|.|.|++|. ....+|+.|||++|++. .+|+.++.+++|++|+|++|+++
T Consensus 40 ~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~- 117 (328)
T 4fcg_A 40 NADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM- 117 (328)
T ss_dssp HHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-
T ss_pred cCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-
Confidence 45788889999 456799999999995 23468999999999987 78888889999999999999999
Q ss_pred cCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhc---------ccccceeeccccccc
Q 003368 71 KIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVS---------LYNLKELAIQENNLT 141 (825)
Q Consensus 71 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~---------l~~L~~L~L~~N~l~ 141 (825)
.+|..|+.+++|++|+|++|+|+ .+|..|..+++|++|+|++|++.+.+|..+.. +++|++|+|++|+++
T Consensus 118 ~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 196 (328)
T 4fcg_A 118 ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196 (328)
T ss_dssp CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC
T ss_pred chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC
Confidence 88999999999999999999998 77888999999999999998888888887664 888999999999888
Q ss_pred cccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcCCccccCCCCCceeecCCccccccCCchhhhcCCC
Q 003368 142 GGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLPPSLGLTLSN 221 (825)
Q Consensus 142 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~ 221 (825)
.+|..|+++++|++|+|++|++++ +|..|+.+++|++| ++++|++.+.+|..+. .+++
T Consensus 197 -~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L-------------------~Ls~n~~~~~~p~~~~-~l~~ 254 (328)
T 4fcg_A 197 -SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEEL-------------------DLRGCTALRNYPPIFG-GRAP 254 (328)
T ss_dssp -CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEE-------------------ECTTCTTCCBCCCCTT-CCCC
T ss_pred -cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEE-------------------ECcCCcchhhhHHHhc-CCCC
Confidence 778888888899999999998884 55567777776666 7777788878887766 7888
Q ss_pred CcEEEcccccCCCCCCccccCCCCccEEEeecccccCccccCcCCCCCCcEEEcccccCC
Q 003368 222 LQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLAYLNVAINNLG 281 (825)
Q Consensus 222 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~ 281 (825)
|++|+|++|.+.+.+|..|.++++|+.|+|++|++.+.+|..++.+++|+.+++..+.+.
T Consensus 255 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 888888888888888888888888888888888888888877777777777777666554
No 54
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=100.00 E-value=4.2e-33 Score=295.12 Aligned_cols=173 Identities=23% Similarity=0.365 Sum_probs=137.2
Q ss_pred cccccceeccCCeeEEEEEEEc-----CCCeEEEEEEeecccc-hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCC
Q 003368 644 GFSSTHLIGIGSFGSVYKGTFD-----RDGTIVAIKVLNLQLQ-GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGN 717 (825)
Q Consensus 644 ~f~~~~~ig~G~~g~Vy~~~~~-----~~g~~vAvK~~~~~~~-~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 717 (825)
+++..+.||+|+||+||+|++. .+++.||||+++.... ...++|.+|++++++++|||||+++|+|.. +
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-----~ 101 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTK-----D 101 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECS-----S
T ss_pred HCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEE-----C
Confidence 4556789999999999999974 3578999999975543 345789999999999999999999999753 5
Q ss_pred CeeeEEEEccCCCChhhhccCCCCCC----CcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeee
Q 003368 718 DFKALVYQYMPNGSLENWLHPDAIPQ----TDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILL 793 (825)
Q Consensus 718 ~~~~lv~e~~~~gsL~~~l~~~~~~~----~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl 793 (825)
+..++|||||++|+|.++|+...... ..........++|.++++|+.|||+||+|||+. +||||||||+|||+
T Consensus 102 ~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLK~~NILl 178 (308)
T 4gt4_A 102 QPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVLV 178 (308)
T ss_dssp SSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEE
T ss_pred CEEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCccccceEE
Confidence 67899999999999999996532111 001112235799999999999999999999985 89999999999999
Q ss_pred cCCCcEEEcccCcccccccCCC--CCccccccC
Q 003368 794 DNNLTAHVGDFGLARLRQEVPN--NQSSSVGDL 824 (825)
Q Consensus 794 ~~~~~~ki~DFGla~~~~~~~~--~~~~~~gt~ 824 (825)
++++.+||+|||+||....... ...+.+||+
T Consensus 179 ~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~ 211 (308)
T 4gt4_A 179 YDKLNVKISDLGLFREVYAADYYKLLGNSLLPI 211 (308)
T ss_dssp CGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCG
T ss_pred CCCCCEEECCcccceeccCCCceeEecccccCC
Confidence 9999999999999998755432 233456664
No 55
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=100.00 E-value=6.1e-33 Score=292.52 Aligned_cols=161 Identities=33% Similarity=0.520 Sum_probs=131.5
Q ss_pred hcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc--chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCC
Q 003368 641 ATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL--QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGND 718 (825)
Q Consensus 641 ~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~ 718 (825)
..+++...+.||+|+||+||+|+++. .||||+++... ....++|.+|++++++++|||||+++|+|. ++
T Consensus 34 ~~~~l~l~~~iG~G~fG~Vy~~~~~~---~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~------~~ 104 (307)
T 3omv_A 34 EASEVMLSTRIGSGSFGTVYKGKWHG---DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT------KD 104 (307)
T ss_dssp CTTSCCEEEECCCCSSSEEEEEESSS---EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC------SS
T ss_pred cHHHeEEeeEEeeCCCcEEEEEEECC---cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEE------CC
Confidence 34567788999999999999999742 59999987543 334578999999999999999999999874 24
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..++|||||++|+|.++|+.. ...++|.++++|+.|||+||+|||+. +||||||||+|||+++++.
T Consensus 105 ~~~iVmEy~~gGsL~~~l~~~-----------~~~l~~~~~~~i~~qia~gL~yLH~~---~IiHRDlKp~NILl~~~~~ 170 (307)
T 3omv_A 105 NLAIVTQWCEGSSLYKHLHVQ-----------ETKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLT 170 (307)
T ss_dssp SCEEEEECCSSCBHHHHHHTS-----------CCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCSSSEEEETTEE
T ss_pred eEEEEEEcCCCCCHHHHHhhc-----------CCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCccCHHHEEECCCCc
Confidence 579999999999999999632 23689999999999999999999985 8999999999999999999
Q ss_pred EEEcccCcccccccCCC--CCccccccC
Q 003368 799 AHVGDFGLARLRQEVPN--NQSSSVGDL 824 (825)
Q Consensus 799 ~ki~DFGla~~~~~~~~--~~~~~~gt~ 824 (825)
+||+|||+|+....... ...+.+||+
T Consensus 171 ~Ki~DFGla~~~~~~~~~~~~~~~~GT~ 198 (307)
T 3omv_A 171 VKIGDFGLATVKSRWSGSQQVEQPTGSV 198 (307)
T ss_dssp EEECCCSSCBC------------CCCCT
T ss_pred EEEeeccCceecccCCcceeecccccCC
Confidence 99999999998764332 234567886
No 56
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=99.98 E-value=1.8e-32 Score=286.74 Aligned_cols=164 Identities=29% Similarity=0.439 Sum_probs=137.4
Q ss_pred cccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc--chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCeeeEE
Q 003368 646 SSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL--QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFKALV 723 (825)
Q Consensus 646 ~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~~lv 723 (825)
+..+.||+|+||+||+|+++.+++.||||++.... ....+.|.+|++++++++|||||+++++|... ..++...|+|
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~-~~~~~~~~lv 107 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWEST-VKGKKCIVLV 107 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEE-ETTEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeec-cCCCcEEEEE
Confidence 45678999999999999999999999999997543 23456799999999999999999999986431 1234568999
Q ss_pred EEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecC-CCcEEEc
Q 003368 724 YQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDN-NLTAHVG 802 (825)
Q Consensus 724 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~-~~~~ki~ 802 (825)
||||++|+|.+++.. ...+++.++..|+.||++||+|||+. .++||||||||+|||++. ++.+||+
T Consensus 108 mEy~~gg~L~~~l~~------------~~~l~~~~~~~~~~qi~~aL~ylH~~-~~~IiHRDlKp~NILl~~~~g~vKl~ 174 (290)
T 3fpq_A 108 TELMTSGTLKTYLKR------------FKVMKIKVLRSWCRQILKGLQFLHTR-TPPIIHRDLKCDNIFITGPTGSVKIG 174 (290)
T ss_dssp EECCCSCBHHHHHHH------------HSSCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCCCCCGGGEEESSTTSCEEEC
T ss_pred EeCCCCCCHHHHHHh------------cCCCCHHHHHHHHHHHHHHHHHHHHC-CCCEEecccChhheeEECCCCCEEEE
Confidence 999999999999942 24689999999999999999999986 235999999999999984 7999999
Q ss_pred ccCcccccccCCCCCccccccCC
Q 003368 803 DFGLARLRQEVPNNQSSSVGDLE 825 (825)
Q Consensus 803 DFGla~~~~~~~~~~~~~~gt~~ 825 (825)
|||+|+.... ....+.+||+.
T Consensus 175 DFGla~~~~~--~~~~~~~GTp~ 195 (290)
T 3fpq_A 175 DLGLATLKRA--SFAKAVIGTPE 195 (290)
T ss_dssp CTTGGGGCCT--TSBEESCSSCC
T ss_pred eCcCCEeCCC--CccCCcccCcc
Confidence 9999997543 34567789973
No 57
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=99.98 E-value=2.4e-32 Score=290.04 Aligned_cols=164 Identities=29% Similarity=0.376 Sum_probs=130.7
Q ss_pred cccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCeeeEE
Q 003368 644 GFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFKALV 723 (825)
Q Consensus 644 ~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~~lv 723 (825)
+|...+.||+|+||+||+|++ +|+.||||+++.... ....+++|+..+.+++|||||+++|+|.... ......|||
T Consensus 4 ~i~L~~~iG~G~fG~Vy~~~~--~g~~VAvK~l~~~~~-~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~-~~~~~~~lV 79 (303)
T 3hmm_A 4 TIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKDN-GTWTQLWLV 79 (303)
T ss_dssp GEEEEEEEEECSSSEEEEEEE--TTEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEEC-SSSEEEEEE
T ss_pred EEEEEEEEeeCCCeEEEEEEE--CCEEEEEEEECccch-hhHHHHHHHHHHhcCCCCCCCcEEEEEEecC-CCceEEEEE
Confidence 467789999999999999998 689999999975422 2233455677778899999999999986421 112357999
Q ss_pred EEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcC-----CCCeeecCCCCCCeeecCCCc
Q 003368 724 YQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHC-----QEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 724 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~-----~~~ivHrdlk~~NILl~~~~~ 798 (825)
||||++|+|.++++. ..++|.++.+|+.|+|+||+|||+.+ .++||||||||+|||+|+++.
T Consensus 80 ~Ey~~~gsL~~~l~~-------------~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~ 146 (303)
T 3hmm_A 80 SDYHEHGSLFDYLNR-------------YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGT 146 (303)
T ss_dssp EECCTTCBHHHHHHH-------------CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSC
T ss_pred ecCCCCCcHHHHHHh-------------CCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCC
Confidence 999999999999953 25899999999999999999999752 468999999999999999999
Q ss_pred EEEcccCcccccccCCCC----CccccccC
Q 003368 799 AHVGDFGLARLRQEVPNN----QSSSVGDL 824 (825)
Q Consensus 799 ~ki~DFGla~~~~~~~~~----~~~~~gt~ 824 (825)
+||+|||+|+........ ..+.+||+
T Consensus 147 ~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~ 176 (303)
T 3hmm_A 147 CCIADLGLAVRHDSATDTIDIAPNHRVGTK 176 (303)
T ss_dssp EEECCCTTCEEEETTTTEESCC-----CCG
T ss_pred EEEEeCCCCccccCCCCceeeecccccccc
Confidence 999999999987654322 23346775
No 58
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=99.97 E-value=5.4e-32 Score=285.87 Aligned_cols=159 Identities=26% Similarity=0.416 Sum_probs=127.9
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc-hhHHHHHHHHHHhhcCCCCCceeEeecccccc-------c
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ-GASKSFAAECRALRNIRHRNLVRVITSCSSID-------F 714 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~-~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~-------~ 714 (825)
++|+..+.||+|+||+||+|+++.+|+.||||+++.... ...+.+.+|++++++++|||||++++++...+ .
T Consensus 5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~ 84 (299)
T 4g31_A 5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS 84 (299)
T ss_dssp HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence 468999999999999999999999999999999976543 34567999999999999999999999865321 1
Q ss_pred CCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeec
Q 003368 715 QGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLD 794 (825)
Q Consensus 715 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~ 794 (825)
....+.|+|||||++|+|.+++.... .....++..+..|+.||++||+|||+. +||||||||+|||++
T Consensus 85 ~~~~~l~ivmE~~~gg~L~~~l~~~~---------~~~~~~~~~~~~i~~qi~~al~ylH~~---~IiHRDlKp~NILl~ 152 (299)
T 4g31_A 85 SPKVYLYIQMQLCRKENLKDWMNGRC---------TIEERERSVCLHIFLQIAEAVEFLHSK---GLMHRDLKPSNIFFT 152 (299)
T ss_dssp --CEEEEEEEECCCSCCHHHHHHTCC---------SGGGSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEC
T ss_pred CCCcEEEEEEecCCCCcHHHHHHhcC---------CCChhHHHHHHHHHHHHHHHHHHHHHC---cCccccCcHHHeEEC
Confidence 12335799999999999999996431 123456777889999999999999986 999999999999999
Q ss_pred CCCcEEEcccCcccccccC
Q 003368 795 NNLTAHVGDFGLARLRQEV 813 (825)
Q Consensus 795 ~~~~~ki~DFGla~~~~~~ 813 (825)
.++.+||+|||+|+.....
T Consensus 153 ~~~~vKl~DFGla~~~~~~ 171 (299)
T 4g31_A 153 MDDVVKVGDFGLVTAMDQD 171 (299)
T ss_dssp TTCCEEECCCCCC------
T ss_pred CCCcEEEccCccceecCCC
Confidence 9999999999999987654
No 59
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=99.97 E-value=4.1e-32 Score=281.50 Aligned_cols=161 Identities=27% Similarity=0.466 Sum_probs=126.5
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc---chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCe
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL---QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDF 719 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~---~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~ 719 (825)
++|+..+.||+|+||+||+|+.+.+|+.||||++++.. ....+.+.+|++++++++|||||+++++ +++++.
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~-----~~~~~~ 87 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDV-----IKSKDE 87 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEE-----EECSSE
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEE-----EEECCE
Confidence 57999999999999999999999999999999997543 2335679999999999999999999998 455778
Q ss_pred eeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcE
Q 003368 720 KALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTA 799 (825)
Q Consensus 720 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ 799 (825)
.|+||||+ +|+|.+++.. ...+++.++..++.|++.||+|||+. +||||||||+|||+++++.+
T Consensus 88 ~~ivmEy~-~g~L~~~l~~------------~~~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDiKP~NILl~~~~~v 151 (275)
T 3hyh_A 88 IIMVIEYA-GNELFDYIVQ------------RDKMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNV 151 (275)
T ss_dssp EEEEEECC-CEEHHHHHHH------------SCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTCCE
T ss_pred EEEEEeCC-CCCHHHHHHH------------cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCChHHeEECCCCCE
Confidence 99999999 6899999842 24689999999999999999999986 99999999999999999999
Q ss_pred EEcccCcccccccCCCCCccccccCC
Q 003368 800 HVGDFGLARLRQEVPNNQSSSVGDLE 825 (825)
Q Consensus 800 ki~DFGla~~~~~~~~~~~~~~gt~~ 825 (825)
||+|||+|+...+. ....+.+||+.
T Consensus 152 kl~DFGla~~~~~~-~~~~~~~GT~~ 176 (275)
T 3hyh_A 152 KIADFGLSNIMTDG-NFLKTSCGSPN 176 (275)
T ss_dssp EECCSSCC----------------CT
T ss_pred EEeecCCCeecCCC-CccCCeeECcc
Confidence 99999999987554 23456788873
No 60
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=99.97 E-value=7.7e-33 Score=291.00 Aligned_cols=162 Identities=26% Similarity=0.289 Sum_probs=132.8
Q ss_pred ccccccceeccCCeeEEEEEEEc---CCCeEEEEEEeecccc--hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCC
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFD---RDGTIVAIKVLNLQLQ--GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGN 717 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~---~~g~~vAvK~~~~~~~--~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 717 (825)
++|+..+.||+|+||+||+|+.. .+++.||||+++.... .....+.+|++++++++|||||++++++ +++
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~-----~~~ 98 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAF-----QTE 98 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEE-----EET
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEE-----EEC
Confidence 56999999999999999999873 4678999999975432 2234688999999999999999999984 457
Q ss_pred CeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCC
Q 003368 718 DFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNL 797 (825)
Q Consensus 718 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~ 797 (825)
+..|+|||||+||+|.+++.. ...+++.++..|+.|++.||+|||+. +||||||||+|||+++++
T Consensus 99 ~~~~ivmEy~~gg~L~~~l~~------------~~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g 163 (304)
T 3ubd_A 99 GKLYLILDFLRGGDLFTRLSK------------EVMFTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEG 163 (304)
T ss_dssp TEEEEEECCCTTCEEHHHHHH------------HCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTS
T ss_pred CEEEEEEEcCCCCCHHHHHHh------------cCCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHeEEcCCC
Confidence 789999999999999999842 24689999999999999999999986 999999999999999999
Q ss_pred cEEEcccCcccccccCCCCCccccccC
Q 003368 798 TAHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 798 ~~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
.+||+|||+|+...+......+.+||+
T Consensus 164 ~vKl~DFGla~~~~~~~~~~~~~~GT~ 190 (304)
T 3ubd_A 164 HIKLTDFGLSKESIDHEKKAYSFCGTV 190 (304)
T ss_dssp CEEEESSEEEEC-----CCCCSCCCCG
T ss_pred CEEecccccceeccCCCccccccccCc
Confidence 999999999998766655667788987
No 61
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=99.97 E-value=4.1e-32 Score=288.96 Aligned_cols=158 Identities=21% Similarity=0.259 Sum_probs=133.5
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCeee
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFKA 721 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~~ 721 (825)
.+.|...+.||+|+||+||+|+++.+|+.||||+++.+.. +.+|++++++++|||||++++++ ++++..|
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~-----~~~~~~~ 126 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAV-----REGPWVN 126 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEE-----EETTEEE
T ss_pred hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-----HHHHHHHHHhCCCCCCCcEEEEE-----EECCEEE
Confidence 4568888999999999999999999999999999976532 24799999999999999999985 4467899
Q ss_pred EEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCC-cEE
Q 003368 722 LVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNL-TAH 800 (825)
Q Consensus 722 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~-~~k 800 (825)
+|||||+||+|.+++.. ...+++.++..|+.||+.||+|||+. +||||||||+|||++.++ .+|
T Consensus 127 ivmEy~~gg~L~~~l~~------------~~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~~vK 191 (336)
T 4g3f_A 127 IFMELLEGGSLGQLIKQ------------MGCLPEDRALYYLGQALEGLEYLHTR---RILHGDVKADNVLLSSDGSRAA 191 (336)
T ss_dssp EEECCCTTCBHHHHHHH------------HSSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCCGGGEEECTTSCCEE
T ss_pred EEEeccCCCcHHHHHHH------------cCCCCHHHHHHHHHHHHHHHHHHHHC---CceecccCHHHEEEeCCCCEEE
Confidence 99999999999999942 24699999999999999999999985 999999999999999987 699
Q ss_pred EcccCcccccccCCCC-----CccccccC
Q 003368 801 VGDFGLARLRQEVPNN-----QSSSVGDL 824 (825)
Q Consensus 801 i~DFGla~~~~~~~~~-----~~~~~gt~ 824 (825)
|+|||+|+........ ..+.+||+
T Consensus 192 l~DFGla~~~~~~~~~~~~~~~~~~~GT~ 220 (336)
T 4g3f_A 192 LCDFGHALCLQPDGLGKSLLTGDYIPGTE 220 (336)
T ss_dssp ECCCTTCEEC------------CCCCCCG
T ss_pred EeeCCCCeEccCCCcccceecCCccccCc
Confidence 9999999987654321 22347886
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.1e-31 Score=293.06 Aligned_cols=293 Identities=20% Similarity=0.226 Sum_probs=198.9
Q ss_pred CCCCCCCCceeeceeecCCCCcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCc
Q 003368 12 SWNDSHHFCDWEGITCSPRHRRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNS 91 (825)
Q Consensus 12 ~w~~~~~~C~~~g~~c~~~~~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 91 (825)
.|......|.|.++ |+ ++++++. .+|..+. ++|++|+|++|++++..+..|.++++|++|+|++|+
T Consensus 22 ~~~~~~~~C~~~~~-c~----------~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 87 (353)
T 2z80_A 22 SSNQASLSCDRNGI-CK----------GSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG 87 (353)
T ss_dssp -----CCEECTTSE-EE----------CCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CCCccCCCCCCCeE-ee----------CCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc
Confidence 45556678888876 64 4566665 5666554 589999999999998777799999999999999999
Q ss_pred CCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeeccccccccccC-ccCCCCCCCCEEEcccC-cCcccCC
Q 003368 92 LVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIP-HFLGNITSLEAISLAYN-SLGGNIP 169 (825)
Q Consensus 92 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N-~l~~~~p 169 (825)
|++..|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|++++..+ ..|.++++|++|++++| .+++..|
T Consensus 88 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 167 (353)
T 2z80_A 88 INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167 (353)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH
Confidence 999889999999999999999999997766779999999999999999996554 58999999999999999 4665556
Q ss_pred cccccccccceecCcCcCCccccCCCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCCCccEE
Q 003368 170 SSLGQLKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSL 249 (825)
Q Consensus 170 ~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 249 (825)
..|.++++|++| ++++|.+++..|..+. .+++|++|++++|.++...+..+..+++|+.|
T Consensus 168 ~~~~~l~~L~~L-------------------~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 227 (353)
T 2z80_A 168 KDFAGLTFLEEL-------------------EIDASDLQSYEPKSLK-SIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227 (353)
T ss_dssp TTTTTCCEEEEE-------------------EEEETTCCEECTTTTT-TCSEEEEEEEECSCSTTHHHHHHHHTTTEEEE
T ss_pred HHccCCCCCCEE-------------------ECCCCCcCccCHHHHh-ccccCCeecCCCCccccchhhhhhhcccccEE
Confidence 666666666655 5555566554444444 55666666666666543333334445556666
Q ss_pred EeecccccCccccCcCCCCCCcEEEcccccCCCCCCCccccccccccCCCCCEEEcccccccccCCCCcccccCCccccC
Q 003368 250 EILGNNFFGKLSVNFGDMKSLAYLNVAINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALPHSIVSGSIPSEIGK 329 (825)
Q Consensus 250 ~L~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l~~ 329 (825)
+|++|++.+..+..+. .....+.++.++|+++.+++
T Consensus 228 ~L~~n~l~~~~~~~l~---------------------------~~~~~~~l~~l~L~~~~l~~----------------- 263 (353)
T 2z80_A 228 ELRDTDLDTFHFSELS---------------------------TGETNSLIKKFTFRNVKITD----------------- 263 (353)
T ss_dssp EEESCBCTTCCCC---------------------------------CCCCCCEEEEESCBCCH-----------------
T ss_pred ECCCCccccccccccc---------------------------cccccchhhccccccccccC-----------------
Confidence 6665555443211110 01123344455554444432
Q ss_pred CCCcCEEEcccCcccccCCccccCCCCCCEEEccccccccccCcc-ccCCCCCcEEEcccCcccccc
Q 003368 330 LVSLYLIEMDHNQFEGKIPEEMSRLQNLQFLNMRHNQLSGEIPSS-FGNLSSLVKLILGNNNLSGVI 395 (825)
Q Consensus 330 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~ 395 (825)
|.+. .+|..+..+++|++|+|++|+++ .+|.. |..+++|++|+|++|.+.+..
T Consensus 264 -----------~~l~-~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 264 -----------ESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp -----------HHHH-HHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred -----------cchh-hhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 1221 35666777777777777777777 34444 567777777777777776543
No 63
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3.9e-35 Score=332.86 Aligned_cols=359 Identities=18% Similarity=0.133 Sum_probs=223.8
Q ss_pred CcEEEEECCCCCCccccCcC-CCCCCCCCEEEcCCCcccc----cCCccccCCCCCCEEECCCCcCCCCCCcCC-CCCC-
Q 003368 32 RRVTVLDLKSKGLIGSLSPQ-IGNLSFLREIHLSNNTIQG----KIPGEIGRLFRLEALYLSHNSLVGEIPGNL-SYCS- 104 (825)
Q Consensus 32 ~~l~~l~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~- 104 (825)
.+++.|||+++++....... +..+++|++|+|++|+++. .++..+..+++|++|+|++|+++...+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 46889999999987655444 7788999999999999884 356778888999999999999886544333 2344
Q ss_pred ---CCCEEEcCCCCCCC----CCChhhhcccccceeeccccccccccCccC-----CCCCCCCEEEcccCcCcccC----
Q 003368 105 ---RLIGLYLGRNKLEG----SIPSEFVSLYNLKELAIQENNLTGGIPHFL-----GNITSLEAISLAYNSLGGNI---- 168 (825)
Q Consensus 105 ---~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~~---- 168 (825)
+|++|+|++|+|+. .++..|..+++|++|+|++|.+++..+..+ ...++|++|+|++|++++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 69999999999984 558888899999999999999875544332 33568999999999988643
Q ss_pred CcccccccccceecCcCcCCccccCCCCCceeecCCccccccCCchhh----hcCCCCcEEEcccccCCCC----CCccc
Q 003368 169 PSSLGQLKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLPPSLG----LTLSNLQLFQISNNFFSGS----FPLAF 240 (825)
Q Consensus 169 p~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~~~----~~l~~L~~L~Ls~N~l~~~----~p~~~ 240 (825)
+..+..+++|++| ++++|.+++..+..+. ...++|++|+|++|.+++. ++..+
T Consensus 163 ~~~l~~~~~L~~L-------------------~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 223 (461)
T 1z7x_W 163 ASVLRAKPDFKEL-------------------TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223 (461)
T ss_dssp HHHHHHCTTCCEE-------------------ECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHH
T ss_pred HHHHhhCCCCCEE-------------------ECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHH
Confidence 4444455555555 6777777644333332 2356888888888888764 35667
Q ss_pred cCCCCccEEEeecccccCcc-----ccCcCCCCCCcEEEcccccCCCCCCCccccccccccCCCCCEEEcccccccccCC
Q 003368 241 SNASNLQSLEILGNNFFGKL-----SVNFGDMKSLAYLNVAINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALP 315 (825)
Q Consensus 241 ~~l~~L~~L~L~~N~l~~~~-----~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 315 (825)
..+++|+.|+|++|.+.... +..+..+++|++|++++|.++... ...++..+..+++|++|++++|.+++..+
T Consensus 224 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~--~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKG--CGDLCRVLRAKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH--HHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHH--HHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence 77888888888888775432 222334566666666666554210 01123344455666666666665543110
Q ss_pred CCcccccCCcccc-CCCCcCEEEcccCccccc----CCccccCCCCCCEEEccccccccccCccccC-----CCCCcEEE
Q 003368 316 HSIVSGSIPSEIG-KLVSLYLIEMDHNQFEGK----IPEEMSRLQNLQFLNMRHNQLSGEIPSSFGN-----LSSLVKLI 385 (825)
Q Consensus 316 ~~~~~~~ip~~l~-~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~ 385 (825)
. .+...+. ..++|+.|++++|.+++. ++..+..+++|++|+|++|++.+..+..+.. .++|++|+
T Consensus 302 ~-----~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 376 (461)
T 1z7x_W 302 R-----LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 376 (461)
T ss_dssp H-----HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred H-----HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEE
Confidence 0 0111111 123555566666655543 3444445555555555555555433332221 34555555
Q ss_pred cccCcccc----ccCCCCCCCCccceeecCCCCCc
Q 003368 386 LGNNNLSG----VIPSSLGNLKQLALLHLFQNDLS 416 (825)
Q Consensus 386 Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~ 416 (825)
|++|++++ .+|..+..+++|++|++++|+++
T Consensus 377 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 377 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred CCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 55555553 44444455555555555555554
No 64
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.2e-34 Score=328.78 Aligned_cols=385 Identities=17% Similarity=0.157 Sum_probs=237.3
Q ss_pred CCCCEEEcCCCCCCCCCChh-hhcccccceeecccccccc----ccCccCCCCCCCCEEEcccCcCcccCCccccc-ccc
Q 003368 104 SRLIGLYLGRNKLEGSIPSE-FVSLYNLKELAIQENNLTG----GIPHFLGNITSLEAISLAYNSLGGNIPSSLGQ-LKE 177 (825)
Q Consensus 104 ~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~ 177 (825)
++|++|||++|+++...... |..+++|++|+|++|++++ .++..+..+++|++|+|++|+++...+..+.. +..
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 46778888888887544333 6777888888888888774 34556677778888888888776433322221 210
Q ss_pred cceecCcCcCCccccCCCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCC----CCCccccCCCCccEEEeec
Q 003368 178 LKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSG----SFPLAFSNASNLQSLEILG 253 (825)
Q Consensus 178 L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~ 253 (825)
..++|++|+|++|.++. .++..|..+++|++|+|++
T Consensus 83 ----------------------------------------~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~ 122 (461)
T 1z7x_W 83 ----------------------------------------PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122 (461)
T ss_dssp ----------------------------------------TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCS
T ss_pred ----------------------------------------CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCC
Confidence 00134455555554442 2244455555555555555
Q ss_pred ccccCccccC-----cCCCCCCcEEEcccccCCCCCCCccccccccccCCCCCEEEcccccccccCCCCcccccCCcccc
Q 003368 254 NNFFGKLSVN-----FGDMKSLAYLNVAINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALPHSIVSGSIPSEIG 328 (825)
Q Consensus 254 N~l~~~~~~~-----~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l~ 328 (825)
|.+....+.. +...++|++|++++|.+.... ...++..+..+++|+.|++++|.+++..+. .+...+.
T Consensus 123 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~--~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~-----~l~~~l~ 195 (461)
T 1z7x_W 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS--CEPLASVLRAKPDFKELTVSNNDINEAGVR-----VLCQGLK 195 (461)
T ss_dssp SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG--HHHHHHHHHHCTTCCEEECCSSBCHHHHHH-----HHHHHHH
T ss_pred CcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH--HHHHHHHHhhCCCCCEEECcCCCcchHHHH-----HHHHHHh
Confidence 5543322211 122345566666655554211 112234456667777777777776631110 0111111
Q ss_pred -CCCCcCEEEcccCccccc----CCccccCCCCCCEEEcccccccccc-----CccccCCCCCcEEEcccCccccc----
Q 003368 329 -KLVSLYLIEMDHNQFEGK----IPEEMSRLQNLQFLNMRHNQLSGEI-----PSSFGNLSSLVKLILGNNNLSGV---- 394 (825)
Q Consensus 329 -~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~Ls~N~l~~~---- 394 (825)
..++|+.|++++|.+++. ++..+..+++|++|+|++|++.+.. +..+..+++|++|++++|++++.
T Consensus 196 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 275 (461)
T 1z7x_W 196 DSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGD 275 (461)
T ss_dssp HSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred cCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHH
Confidence 245777888888877753 4666777788888888888776432 33334577888888888887753
Q ss_pred cCCCCCCCCccceeecCCCCCccccchhhhcc-----cccccccccCCCccccC----CCccccccccccEEeecCceec
Q 003368 395 IPSSLGNLKQLALLHLFQNDLSGAIPEEIFNI-----SHMSDSLNFARNHLVGS----IPPKIGNLKVLRMFVVSSNNLS 465 (825)
Q Consensus 395 ~p~~~~~l~~L~~L~L~~N~l~g~ip~~~~~~-----~~l~~~l~l~~N~l~~~----~p~~~~~l~~L~~L~ls~N~l~ 465 (825)
++..+..+++|+.|++++|.+++..+..+... ..+ +.|++++|.+++. +|..+..+++|+.|++++|.++
T Consensus 276 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L-~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 276 LCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL-ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354 (461)
T ss_dssp HHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCC-CEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred HHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccc-eeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence 45566667788888888888765444433322 233 6777888877654 4566677788999999999888
Q ss_pred ccCCccccC-----CCCCCEEEccCCcCCC----CCCccccCCCCCCEEECCCCccccccCcc----ccc-c-cCceeeC
Q 003368 466 GEIPSEIGS-----CFYLQEIYMAENFFRG----SIPSSLVSLKDLREIDLSQNNLSGKIPIS----LER-L-PLEYLNL 530 (825)
Q Consensus 466 g~~p~~~~~-----l~~L~~L~l~~N~l~g----~~p~~~~~l~~L~~Ldls~N~l~~~~p~~----~~~-l-~L~~l~l 530 (825)
+..+..+.. .++|+.|++++|.+++ .+|..+..+++|++||+++|++++.-... +.. . .|+.|++
T Consensus 355 ~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~ 434 (461)
T 1z7x_W 355 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL 434 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred cccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheee
Confidence 765555543 6689999999999886 67888888899999999999888642111 111 1 3666666
Q ss_pred CCCcce
Q 003368 531 SFNDLE 536 (825)
Q Consensus 531 s~N~l~ 536 (825)
.++.+.
T Consensus 435 ~~~~~~ 440 (461)
T 1z7x_W 435 YDIYWS 440 (461)
T ss_dssp TTCCCC
T ss_pred cccccC
Confidence 666554
No 65
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=99.97 E-value=1.9e-31 Score=287.52 Aligned_cols=184 Identities=24% Similarity=0.310 Sum_probs=144.4
Q ss_pred cHHHHHhhcccccccceeccCCeeEEEEEEEcCC-----CeEEEEEEeecccc-hhHHHHHHHHHHhhcCCC-CCceeEe
Q 003368 634 SYESLLKATDGFSSTHLIGIGSFGSVYKGTFDRD-----GTIVAIKVLNLQLQ-GASKSFAAECRALRNIRH-RNLVRVI 706 (825)
Q Consensus 634 ~~~~~~~~~~~f~~~~~ig~G~~g~Vy~~~~~~~-----g~~vAvK~~~~~~~-~~~~~~~~E~~~l~~l~H-~niv~l~ 706 (825)
..+++....++|+..+.||+|+||+||+|++... ++.||||++..... ...++|.+|++++++++| ||||+++
T Consensus 55 ~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~ 134 (353)
T 4ase_A 55 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL 134 (353)
T ss_dssp CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred CCcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEE
Confidence 3445555668899999999999999999998543 36899999976543 345689999999999975 8999999
Q ss_pred ecccccccCCCCeeeEEEEccCCCChhhhccCCCCCC----CcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCee
Q 003368 707 TSCSSIDFQGNDFKALVYQYMPNGSLENWLHPDAIPQ----TDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTI 782 (825)
Q Consensus 707 ~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~----~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~iv 782 (825)
|+|.. .++..++|||||++|+|.++|+...... ..........++|.+++.|+.|||+||+|||+. +||
T Consensus 135 g~~~~----~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~---~ii 207 (353)
T 4ase_A 135 GACTK----PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCI 207 (353)
T ss_dssp EEECC----TTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT---TCC
T ss_pred EEEEe----cCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhC---Cee
Confidence 99853 3456899999999999999996432100 000011234689999999999999999999985 899
Q ss_pred ecCCCCCCeeecCCCcEEEcccCcccccccCCCC--CccccccC
Q 003368 783 HCDLKPSNILLDNNLTAHVGDFGLARLRQEVPNN--QSSSVGDL 824 (825)
Q Consensus 783 Hrdlk~~NILl~~~~~~ki~DFGla~~~~~~~~~--~~~~~gt~ 824 (825)
||||||+|||+++++.+||+|||+||........ ..+.+||+
T Consensus 208 HRDLK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~ 251 (353)
T 4ase_A 208 HRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPL 251 (353)
T ss_dssp CSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECG
T ss_pred cCccCccceeeCCCCCEEECcchhhhhcccCCCceeeccccccc
Confidence 9999999999999999999999999987655432 23445664
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.97 E-value=4.4e-30 Score=297.70 Aligned_cols=297 Identities=24% Similarity=0.284 Sum_probs=187.9
Q ss_pred cCCcccccCCCCCCCCceeeceeec------CCCCcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCcccc
Q 003368 4 QYPEGVLNSWNDSHHFCDWEGITCS------PRHRRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIG 77 (825)
Q Consensus 4 ~~~~~~~~~w~~~~~~C~~~g~~c~------~~~~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 77 (825)
.|+..+..+|....++|.|+|..|. +....++.|++++|++. .+|..+. ++|++|+|++|+|+ .+|.
T Consensus 6 ~~~~~~w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~--- 78 (622)
T 3g06_A 6 AEYDAVWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA--- 78 (622)
T ss_dssp ----CHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---
T ss_pred HHHHHHHHHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---
Confidence 3556677889877899999774332 22245888888888887 6676665 78888888888888 4555
Q ss_pred CCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEE
Q 003368 78 RLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAI 157 (825)
Q Consensus 78 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 157 (825)
.+++|++|+|++|+|++ +|. .+++|++|+|++|+|++. |. .+++|+.|++++|+|++ +|.. +++|++|
T Consensus 79 ~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L 146 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQEL 146 (622)
T ss_dssp CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEE
Confidence 46788888888888874 444 567788888888888753 33 56677777777777774 4432 3677777
Q ss_pred EcccCcCcccCCcccccccccceecCcCcCCccccCCCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCC
Q 003368 158 SLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFP 237 (825)
Q Consensus 158 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p 237 (825)
+|++|++++ +|. .+++|+.|++++|.+++ +|
T Consensus 147 ~Ls~N~l~~-l~~-----------------------------------------------~~~~L~~L~L~~N~l~~-l~ 177 (622)
T 3g06_A 147 SVSDNQLAS-LPA-----------------------------------------------LPSELCKLWAYNNQLTS-LP 177 (622)
T ss_dssp ECCSSCCSC-CCC-----------------------------------------------CCTTCCEEECCSSCCSC-CC
T ss_pred ECcCCcCCC-cCC-----------------------------------------------ccCCCCEEECCCCCCCC-Cc
Confidence 777777763 221 12334444555555443 22
Q ss_pred ccccCCCCccEEEeecccccCccccCcCCCCCCcEEEcccccCCCCCCCccccccccccCCCCCEEEcccccccccCCCC
Q 003368 238 LAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLAYLNVAINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALPHS 317 (825)
Q Consensus 238 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 317 (825)
..+++|+.|+|++|++.+..+ .+++|+.|++++|.++
T Consensus 178 ---~~~~~L~~L~Ls~N~l~~l~~----------------------------------~~~~L~~L~L~~N~l~------ 214 (622)
T 3g06_A 178 ---MLPSGLQELSVSDNQLASLPT----------------------------------LPSELYKLWAYNNRLT------ 214 (622)
T ss_dssp ---CCCTTCCEEECCSSCCSCCCC----------------------------------CCTTCCEEECCSSCCS------
T ss_pred ---ccCCCCcEEECCCCCCCCCCC----------------------------------ccchhhEEECcCCccc------
Confidence 223445555555554433110 0134455555555554
Q ss_pred cccccCCccccCCCCcCEEEcccCcccccCCccccCCCCCCEEEccccccccccCccccCCCCCcEEEcccCccccccCC
Q 003368 318 IVSGSIPSEIGKLVSLYLIEMDHNQFEGKIPEEMSRLQNLQFLNMRHNQLSGEIPSSFGNLSSLVKLILGNNNLSGVIPS 397 (825)
Q Consensus 318 ~~~~~ip~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 397 (825)
.+|.. +++|+.|++++|++++ +| ..+++|++|+|++|+|+ .+|. .+++|++|+|++|+|+ .+|.
T Consensus 215 ----~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~ 278 (622)
T 3g06_A 215 ----SLPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPE 278 (622)
T ss_dssp ----SCCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCG
T ss_pred ----ccCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCH
Confidence 23321 2456666666666664 44 34567777777777777 4555 4577788888888887 5677
Q ss_pred CCCCCCccceeecCCCCCccccchhhhccc
Q 003368 398 SLGNLKQLALLHLFQNDLSGAIPEEIFNIS 427 (825)
Q Consensus 398 ~~~~l~~L~~L~L~~N~l~g~ip~~~~~~~ 427 (825)
.+.++++|+.|+|++|.+++.+|..+..+.
T Consensus 279 ~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 279 SLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp GGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred HHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 778888888888888888877777665443
No 67
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=3.4e-30 Score=281.30 Aligned_cols=279 Identities=19% Similarity=0.194 Sum_probs=190.6
Q ss_pred CCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeec
Q 003368 56 SFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAI 135 (825)
Q Consensus 56 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 135 (825)
+.....++++|.++ .+|..+. ++|++|+|++|+|++..+..|..+++|++|+|++|+|++..|.+|.++++|++|+|
T Consensus 31 ~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 31 DRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp CTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence 34456788899998 5676655 48899999999998777778888889999999999888887888888888888888
Q ss_pred cccccccccCccCCCCCCCCEEEcccCcCcccCC-cccccccccceecCcCcCCccccCCCCCceeecCCccccccCCch
Q 003368 136 QENNLTGGIPHFLGNITSLEAISLAYNSLGGNIP-SSLGQLKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLPPS 214 (825)
Q Consensus 136 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~ 214 (825)
++|++++..+..|+++++|++|+|++|++++..+ ..|..+++
T Consensus 108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~------------------------------------- 150 (353)
T 2z80_A 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK------------------------------------- 150 (353)
T ss_dssp CSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTT-------------------------------------
T ss_pred CCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCC-------------------------------------
Confidence 8888886666668888888888888888874332 24444444
Q ss_pred hhhcCCCCcEEEcccc-cCCCCCCccccCCCCccEEEeecccccCccccCcCCCCCCcEEEcccccCCCCCCCccccccc
Q 003368 215 LGLTLSNLQLFQISNN-FFSGSFPLAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLAYLNVAINNLGSGESDEMSFIHS 293 (825)
Q Consensus 215 ~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~ 293 (825)
|++|++++| .+++..+..|.++++|+.|++++|++.+..+..+..+++|++|++++|.+.... ...
T Consensus 151 -------L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~------~~~ 217 (353)
T 2z80_A 151 -------LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL------EIF 217 (353)
T ss_dssp -------CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH------HHH
T ss_pred -------CcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccch------hhh
Confidence 444444444 244344445555555555555555555554444544444444444444442211 112
Q ss_pred cccCCCCCEEEcccccccccCCCCcccccCCccccCCCCcCEEEcccCcccccCCcc---ccCCCCCCEEEcccccccc-
Q 003368 294 LANCSNLSFLNLVANQFKGALPHSIVSGSIPSEIGKLVSLYLIEMDHNQFEGKIPEE---MSRLQNLQFLNMRHNQLSG- 369 (825)
Q Consensus 294 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l~~l~~L~~L~L~~N~l~~~~p~~---~~~l~~L~~L~Ls~N~l~~- 369 (825)
+..+++|+.|++++|.+++ ..+.. ......++.++|++|.+.+
T Consensus 218 ~~~~~~L~~L~L~~n~l~~---------------------------------~~~~~l~~~~~~~~l~~l~L~~~~l~~~ 264 (353)
T 2z80_A 218 VDVTSSVECLELRDTDLDT---------------------------------FHFSELSTGETNSLIKKFTFRNVKITDE 264 (353)
T ss_dssp HHHTTTEEEEEEESCBCTT---------------------------------CCCC------CCCCCCEEEEESCBCCHH
T ss_pred hhhcccccEEECCCCcccc---------------------------------ccccccccccccchhhccccccccccCc
Confidence 2345666666666666653 11111 1234556677777777664
Q ss_pred ---ccCccccCCCCCcEEEcccCccccccCCCCCCCCccceeecCCCCCccccc
Q 003368 370 ---EIPSSFGNLSSLVKLILGNNNLSGVIPSSLGNLKQLALLHLFQNDLSGAIP 420 (825)
Q Consensus 370 ---~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~ip 420 (825)
.+|.++..+++|++|+|++|+++...+..|+.+++|+.|++++|.+++..|
T Consensus 265 ~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 265 SLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred chhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 478889999999999999999995444446999999999999999998766
No 68
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=4e-30 Score=274.97 Aligned_cols=204 Identities=26% Similarity=0.320 Sum_probs=131.9
Q ss_pred CceeeceeecCCCCcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCC--C
Q 003368 19 FCDWEGITCSPRHRRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGE--I 96 (825)
Q Consensus 19 ~C~~~g~~c~~~~~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~ 96 (825)
.|.|.++.|.. +++. .+|..+. ++|++|+|++|+++...+..|.++++|++|+|++|+|+.. .
T Consensus 6 ~C~~~~l~c~~------------~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 70 (306)
T 2z66_A 6 SCSGTEIRCNS------------KGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC 70 (306)
T ss_dssp EEETTEEECCS------------SCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEE
T ss_pred eeCCCEEEcCC------------CCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCc
Confidence 36677766653 3443 4454443 5788888888888855555678888888888888888733 3
Q ss_pred CcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeeccccccccccC-ccCCCCCCCCEEEcccCcCcccCCcccccc
Q 003368 97 PGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIP-HFLGNITSLEAISLAYNSLGGNIPSSLGQL 175 (825)
Q Consensus 97 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 175 (825)
|..+..+++|++|+|++|+++ .+|..|..+++|++|++++|++++..+ ..|..+++|++|++++|++++..|..|..+
T Consensus 71 ~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 149 (306)
T 2z66_A 71 SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 149 (306)
T ss_dssp EHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTC
T ss_pred ccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccC
Confidence 566667788888888888887 456667778888888888888876554 567778888888888888776666666555
Q ss_pred cccceecCcCcCCccccCCCCCceeecCCccccc-cCCchhhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecc
Q 003368 176 KELKSLGLGGTIPPSIYNLSLLANFSVPENRLHG-SLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGN 254 (825)
Q Consensus 176 ~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~-~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 254 (825)
++|++| ++++|.+++ .+|..+. .+++|++|+|++|.+++..|..|..+++|+.|+|++|
T Consensus 150 ~~L~~L-------------------~l~~n~l~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 209 (306)
T 2z66_A 150 SSLEVL-------------------KMAGNSFQENFLPDIFT-ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209 (306)
T ss_dssp TTCCEE-------------------ECTTCEEGGGEECSCCT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cCCCEE-------------------ECCCCccccccchhHHh-hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC
Confidence 555555 445555554 2333332 4555555555555555444444555555555555444
Q ss_pred cccC
Q 003368 255 NFFG 258 (825)
Q Consensus 255 ~l~~ 258 (825)
++.+
T Consensus 210 ~l~~ 213 (306)
T 2z66_A 210 NFFS 213 (306)
T ss_dssp CCSB
T ss_pred ccCc
Confidence 4433
No 69
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=99.96 E-value=6.8e-30 Score=280.27 Aligned_cols=166 Identities=26% Similarity=0.380 Sum_probs=139.8
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc--hhHHHHHHHHHHhhcCCCCCceeEeeccccc-ccCCCCe
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ--GASKSFAAECRALRNIRHRNLVRVITSCSSI-DFQGNDF 719 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~--~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~-~~~~~~~ 719 (825)
++|+..+.||+|+||+||+|+++.+|+.||||+++.... ...+.+.+|+++|++++|||||++++++... .+.+.+.
T Consensus 54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~ 133 (398)
T 4b99_A 54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS 133 (398)
T ss_dssp SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence 579999999999999999999999999999999975432 3356788999999999999999999986532 2445567
Q ss_pred eeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcE
Q 003368 720 KALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTA 799 (825)
Q Consensus 720 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ 799 (825)
.|+|||||+ |+|.+++... ..+++.++..|+.||+.||+|||+. +||||||||+|||++.++.+
T Consensus 134 ~~ivmE~~~-g~L~~~i~~~------------~~l~~~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NIl~~~~~~~ 197 (398)
T 4b99_A 134 VYVVLDLME-SDLHQIIHSS------------QPLTLEHVRYFLYQLLRGLKYMHSA---QVIHRDLKPSNLLVNENCEL 197 (398)
T ss_dssp EEEEEECCS-EEHHHHHTSS------------SCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCE
T ss_pred EEEEEeCCC-CCHHHHHHhc------------CCCCHHHHHHHHHHHHHHHHHHHHC---cCcCCCcCccccccCCCCCE
Confidence 899999996 6899998532 4689999999999999999999986 99999999999999999999
Q ss_pred EEcccCcccccccCC----CCCccccccC
Q 003368 800 HVGDFGLARLRQEVP----NNQSSSVGDL 824 (825)
Q Consensus 800 ki~DFGla~~~~~~~----~~~~~~~gt~ 824 (825)
||+|||+|+...... ....+.+||+
T Consensus 198 Ki~DFGla~~~~~~~~~~~~~~~~~~GT~ 226 (398)
T 4b99_A 198 KIGDFGMARGLCTSPAEHQYFMTEYVATR 226 (398)
T ss_dssp EECCCTTCBCC-------CCCCCSSCCCC
T ss_pred EEeecceeeecccCccccccccccceeCh
Confidence 999999999764432 2345678887
No 70
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=4.5e-32 Score=317.85 Aligned_cols=433 Identities=16% Similarity=0.163 Sum_probs=227.1
Q ss_pred CceeeceeecCCCCcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcc---cccCCcccc------------CCCCCC
Q 003368 19 FCDWEGITCSPRHRRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTI---QGKIPGEIG------------RLFRLE 83 (825)
Q Consensus 19 ~C~~~g~~c~~~~~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l---~~~~p~~~~------------~l~~L~ 83 (825)
|+.|.++.+... .+ +.+. +.....++..+..+++|++|+|+++.. .+.+|..++ .+++|+
T Consensus 41 ck~W~~~~~~~~-~~---l~~~-~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~ 115 (592)
T 3ogk_B 41 CRRWFKIDSETR-EH---VTMA-LCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLK 115 (592)
T ss_dssp CHHHHHHHHHHC-CE---EEES-CGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCC
T ss_pred hHHHHHhhhccc-cE---EEEe-eccccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCC
Confidence 347999865322 12 2222 222333444556778889999977532 134444444 566777
Q ss_pred EEECCCCcCCCCCCcCCCCC--CCCCEEEcCCCC-CCC-CCChhhhcccccceeeccccccccc----cCccCCCCCCCC
Q 003368 84 ALYLSHNSLVGEIPGNLSYC--SRLIGLYLGRNK-LEG-SIPSEFVSLYNLKELAIQENNLTGG----IPHFLGNITSLE 155 (825)
Q Consensus 84 ~L~Ls~N~l~~~~p~~~~~l--~~L~~L~Ls~N~-l~~-~~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~ 155 (825)
+|+|++|.+++..+..+... .+|++|+|++|. ++. .++.....+++|++|+|++|.+++. ++..+.++++|+
T Consensus 116 ~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~ 195 (592)
T 3ogk_B 116 SVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLE 195 (592)
T ss_dssp EEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCC
T ss_pred eEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCcc
Confidence 77777776665555545442 237777777665 110 1122233566777777777766544 233345566777
Q ss_pred EEEcccCcCcc----cCCcccccccccceecCcCcCCccccCCCCCceeecCCccccccCCchhhhcCCCCcEEEccccc
Q 003368 156 AISLAYNSLGG----NIPSSLGQLKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNF 231 (825)
Q Consensus 156 ~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~ 231 (825)
.|+|++|.+++ .++..+.++++|+.| ++++|.+.+ +|..+. .+++|+.|+++...
T Consensus 196 ~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L-------------------~L~~~~~~~-l~~~~~-~~~~L~~L~l~~~~ 254 (592)
T 3ogk_B 196 VLNFYMTEFAKISPKDLETIARNCRSLVSV-------------------KVGDFEILE-LVGFFK-AAANLEEFCGGSLN 254 (592)
T ss_dssp EEECTTCCCSSCCHHHHHHHHHHCTTCCEE-------------------ECSSCBGGG-GHHHHH-HCTTCCEEEECBCC
T ss_pred EEEeeccCCCccCHHHHHHHHhhCCCCcEE-------------------eccCccHHH-HHHHHh-hhhHHHhhcccccc
Confidence 77777777652 222223333444443 555666653 444433 66777777776532
Q ss_pred CC---CCCCccccCCCCccEEEeecccccCccccCcCCCCCCcEEEcccccCCCCCCCccccccccccCCCCCEEEcccc
Q 003368 232 FS---GSFPLAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLAYLNVAINNLGSGESDEMSFIHSLANCSNLSFLNLVAN 308 (825)
Q Consensus 232 l~---~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N 308 (825)
.. +..+..+..+++|+.|+++++. ...++..+..+++|++|++++|.+... .+...+..+++|+.|+++ +
T Consensus 255 ~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~-----~~~~~~~~~~~L~~L~L~-~ 327 (592)
T 3ogk_B 255 EDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETE-----DHCTLIQKCPNLEVLETR-N 327 (592)
T ss_dssp CCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHH-----HHHHHHTTCTTCCEEEEE-G
T ss_pred cccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHH-----HHHHHHHhCcCCCEEecc-C
Confidence 22 1223445566666666666542 233444555556666666666553211 111223455566666665 2
Q ss_pred cccccCCCCcccccCCccccCCCCcCEEEcc-----------cCccccc-CCccccCCCCCCEEEccccccccccCcccc
Q 003368 309 QFKGALPHSIVSGSIPSEIGKLVSLYLIEMD-----------HNQFEGK-IPEEMSRLQNLQFLNMRHNQLSGEIPSSFG 376 (825)
Q Consensus 309 ~l~~~~~~~~~~~~ip~~l~~l~~L~~L~L~-----------~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 376 (825)
.+.. +.++.....+++|+.|+++ .|.+++. ++.....+++|++|+++.|.+++..+..+.
T Consensus 328 ~~~~--------~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~ 399 (592)
T 3ogk_B 328 VIGD--------RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399 (592)
T ss_dssp GGHH--------HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH
T ss_pred ccCH--------HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH
Confidence 2221 0222223445556666665 2444432 112233455566666655555554444444
Q ss_pred C-CCCCcEEEcc----cCccccc-----cCCCCCCCCccceeecCCCCCccccchhhhcccccccccccCCCccccCCCc
Q 003368 377 N-LSSLVKLILG----NNNLSGV-----IPSSLGNLKQLALLHLFQNDLSGAIPEEIFNISHMSDSLNFARNHLVGSIPP 446 (825)
Q Consensus 377 ~-l~~L~~L~Ls----~N~l~~~-----~p~~~~~l~~L~~L~L~~N~l~g~ip~~~~~~~~l~~~l~l~~N~l~~~~p~ 446 (825)
. +++|+.|+++ .|.+++. ++..+.++++|+.|++++|. +.+++..+.
T Consensus 400 ~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~-----------------------~~l~~~~~~ 456 (592)
T 3ogk_B 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ-----------------------GGLTDLGLS 456 (592)
T ss_dssp HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCG-----------------------GGCCHHHHH
T ss_pred hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCC-----------------------CCccHHHHH
Confidence 3 5555666554 4444432 12223345555555554322 112222222
Q ss_pred ccc-ccccccEEeecCceecc-cCCccccCCCCCCEEEccCCcCCCC-CCccccCCCCCCEEECCCCccccc
Q 003368 447 KIG-NLKVLRMFVVSSNNLSG-EIPSEIGSCFYLQEIYMAENFFRGS-IPSSLVSLKDLREIDLSQNNLSGK 515 (825)
Q Consensus 447 ~~~-~l~~L~~L~ls~N~l~g-~~p~~~~~l~~L~~L~l~~N~l~g~-~p~~~~~l~~L~~Ldls~N~l~~~ 515 (825)
.++ .+++|+.|++++|++++ .++..+..+++|+.|++++|.+++. ++..+..+++|++|++++|++++.
T Consensus 457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 222 25667777777777765 3444556677777777777777543 334445677888888888887754
No 71
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=2.1e-28 Score=276.45 Aligned_cols=247 Identities=24% Similarity=0.248 Sum_probs=160.6
Q ss_pred CCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeeccc
Q 003368 58 LREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQE 137 (825)
Q Consensus 58 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 137 (825)
.+.++.+++.++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|+|+++.|..|.++++|++|+|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 456777777777 4565554 5677777777777777777777777777777777777777777777777777777777
Q ss_pred cccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcCCccccCCCCCceeecCCccccccCCchhhh
Q 003368 138 NNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLPPSLGL 217 (825)
Q Consensus 138 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~~~~ 217 (825)
|+|++..+..|.++++|++|+|++|++++..+..|.++++|+.|
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L------------------------------------ 176 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL------------------------------------ 176 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEE------------------------------------
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEE------------------------------------
Confidence 77776666677777777777777777775444445444444444
Q ss_pred cCCCCcEEEcccc-cCCCCCCccccCCCCccEEEeecccccCccccCcCCCCCCcEEEcccccCCCCCCCcccccccccc
Q 003368 218 TLSNLQLFQISNN-FFSGSFPLAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLAYLNVAINNLGSGESDEMSFIHSLAN 296 (825)
Q Consensus 218 ~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~ 296 (825)
+|++| .+..+.+..|.++++|++|+|++|++.+
T Consensus 177 --------~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-------------------------------------- 210 (452)
T 3zyi_A 177 --------DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-------------------------------------- 210 (452)
T ss_dssp --------ECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS--------------------------------------
T ss_pred --------eCCCCCCccccChhhccCCCCCCEEECCCCcccc--------------------------------------
Confidence 33331 2221122233333444444443333321
Q ss_pred CCCCCEEEcccccccccCCCCcccccCCccccCCCCcCEEEcccCcccccCCccccCCCCCCEEEccccccccccCcccc
Q 003368 297 CSNLSFLNLVANQFKGALPHSIVSGSIPSEIGKLVSLYLIEMDHNQFEGKIPEEMSRLQNLQFLNMRHNQLSGEIPSSFG 376 (825)
Q Consensus 297 l~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 376 (825)
+| .+..+++|+.|+|++|++++..|..|.++++|++|+|++|++.+..|..|.
T Consensus 211 --------------------------~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 263 (452)
T 3zyi_A 211 --------------------------MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD 263 (452)
T ss_dssp --------------------------CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred --------------------------cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhc
Confidence 11 133444555566666666666666777777777777777777777777777
Q ss_pred CCCCCcEEEcccCccccccCCCCCCCCccceeecCCCCCc
Q 003368 377 NLSSLVKLILGNNNLSGVIPSSLGNLKQLALLHLFQNDLS 416 (825)
Q Consensus 377 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 416 (825)
.+++|++|+|++|++++..+..|..+++|+.|+|++|.+.
T Consensus 264 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 264 GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 7777777777777777666667777777777777777775
No 72
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=99.96 E-value=2.5e-29 Score=287.10 Aligned_cols=162 Identities=23% Similarity=0.302 Sum_probs=138.6
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc---chhHHHH---HHHHHHhhcCCCCCceeEeecccccccC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL---QGASKSF---AAECRALRNIRHRNLVRVITSCSSIDFQ 715 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~---~~~~~~~---~~E~~~l~~l~H~niv~l~~~~~~~~~~ 715 (825)
.++|+..++||+|+||+||+|+.+.+|+.||||++.+.. ......+ ..++++++.++|||||+++++ |+
T Consensus 188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~-----f~ 262 (689)
T 3v5w_A 188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYA-----FH 262 (689)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEE-----EE
T ss_pred hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEE-----EE
Confidence 468999999999999999999999999999999997542 1122223 345677888899999999998 56
Q ss_pred CCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecC
Q 003368 716 GNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDN 795 (825)
Q Consensus 716 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~ 795 (825)
+.+..|+|||||+||+|.+++.. ...+++.++..|+.||+.||+|||+. +||||||||+|||+|.
T Consensus 263 ~~~~lylVmEy~~GGdL~~~l~~------------~~~l~E~~a~~y~~qIl~aL~yLH~~---gIiHRDLKPeNILld~ 327 (689)
T 3v5w_A 263 TPDKLSFILDLMNGGDLHYHLSQ------------HGVFSEADMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDE 327 (689)
T ss_dssp CSSEEEEEECCCCSCBHHHHHHH------------HCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECT
T ss_pred ECCEEEEEEecCCCCcHHHHHHh------------cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCchHHeEEeC
Confidence 78899999999999999999942 24689999999999999999999985 9999999999999999
Q ss_pred CCcEEEcccCcccccccCCCCCccccccCC
Q 003368 796 NLTAHVGDFGLARLRQEVPNNQSSSVGDLE 825 (825)
Q Consensus 796 ~~~~ki~DFGla~~~~~~~~~~~~~~gt~~ 825 (825)
+|++||+|||+|+..... ...+.+||++
T Consensus 328 ~G~vKL~DFGlA~~~~~~--~~~t~~GTp~ 355 (689)
T 3v5w_A 328 HGHVRISDLGLACDFSKK--KPHASVGTHG 355 (689)
T ss_dssp TSCEEECCCTTCEECSSC--CCCSCCSCGG
T ss_pred CCCEEecccceeeecCCC--CCCCccCCcC
Confidence 999999999999987543 3466789973
No 73
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=2.8e-28 Score=274.42 Aligned_cols=89 Identities=28% Similarity=0.353 Sum_probs=63.3
Q ss_pred cCCCCcCEEEcccCcccccCCccccCCCCCCEEEccccccccccCccccCCCCCcEEEcccCccccccCCCCCCCCccce
Q 003368 328 GKLVSLYLIEMDHNQFEGKIPEEMSRLQNLQFLNMRHNQLSGEIPSSFGNLSSLVKLILGNNNLSGVIPSSLGNLKQLAL 407 (825)
Q Consensus 328 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 407 (825)
..+++|+.|+|++|++++..|..|.++++|++|+|++|++.+..|..|..+++|++|+|++|++++..+..|..+++|+.
T Consensus 204 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 283 (440)
T 3zyj_A 204 TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER 283 (440)
T ss_dssp TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCE
T ss_pred CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCE
Confidence 33445555556666666566667777777777777777777777777777777777777777777766667777777777
Q ss_pred eecCCCCCc
Q 003368 408 LHLFQNDLS 416 (825)
Q Consensus 408 L~L~~N~l~ 416 (825)
|+|++|.+.
T Consensus 284 L~L~~Np~~ 292 (440)
T 3zyj_A 284 IHLHHNPWN 292 (440)
T ss_dssp EECCSSCEE
T ss_pred EEcCCCCcc
Confidence 777777775
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=6.8e-31 Score=281.52 Aligned_cols=224 Identities=18% Similarity=0.161 Sum_probs=173.3
Q ss_pred ccCCCCCCCCceeeceeecCCCCcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcc-cccCCcccc-------CCCC
Q 003368 10 LNSWNDSHHFCDWEGITCSPRHRRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTI-QGKIPGEIG-------RLFR 81 (825)
Q Consensus 10 ~~~w~~~~~~C~~~g~~c~~~~~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~p~~~~-------~l~~ 81 (825)
..+|.....|+.+..+......++++.+++++|.+ .+|..+... |+.|+|++|++ ...+|..+. ++++
T Consensus 21 ~~~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~ 96 (312)
T 1wwl_A 21 KPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISG 96 (312)
T ss_dssp SCCGGGGGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSC
T ss_pred ccchHHHhhhhccccEEEEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCC
Confidence 45676555666666665555556788899999998 777766554 89999999999 456777766 7899
Q ss_pred CCEEECCCCcCCCCCCcCC--CCCCCCCEEEcCCCCCCCCCChhhhcc-----cccceeeccccccccccCccCCCCCCC
Q 003368 82 LEALYLSHNSLVGEIPGNL--SYCSRLIGLYLGRNKLEGSIPSEFVSL-----YNLKELAIQENNLTGGIPHFLGNITSL 154 (825)
Q Consensus 82 L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~~l~~L 154 (825)
|++|+|++|+|++.+|..+ ..+++|++|+|++|++++. |..|..+ ++|++|+|++|++++..|..|+.+++|
T Consensus 97 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L 175 (312)
T 1wwl_A 97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175 (312)
T ss_dssp CCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred ccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence 9999999999998888876 8999999999999999977 8888888 899999999999998888999999999
Q ss_pred CEEEcccCcCcccC--Cccc--ccccccceecCcCcCCccccCCCCCceeecCCccccc--cCCchhhhcCCCCcEEEcc
Q 003368 155 EAISLAYNSLGGNI--PSSL--GQLKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHG--SLPPSLGLTLSNLQLFQIS 228 (825)
Q Consensus 155 ~~L~Ls~N~l~~~~--p~~~--~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~--~lp~~~~~~l~~L~~L~Ls 228 (825)
++|+|++|++++.+ |..+ ..+++|++| ++++|++++ .++..++..+++|++|+|+
T Consensus 176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L-------------------~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls 236 (312)
T 1wwl_A 176 STLDLSDNPELGERGLISALCPLKFPTLQVL-------------------ALRNAGMETPSGVCSALAAARVQLQGLDLS 236 (312)
T ss_dssp CEEECCSCTTCHHHHHHHHSCTTSCTTCCEE-------------------ECTTSCCCCHHHHHHHHHHTTCCCSEEECT
T ss_pred CEEECCCCCcCcchHHHHHHHhccCCCCCEE-------------------ECCCCcCcchHHHHHHHHhcCCCCCEEECC
Confidence 99999999987642 3333 555555555 667777762 3444555567788888888
Q ss_pred cccCCCCCC-ccccCCCCccEEEeeccccc
Q 003368 229 NNFFSGSFP-LAFSNASNLQSLEILGNNFF 257 (825)
Q Consensus 229 ~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~ 257 (825)
+|++++..| ..+..+++|++|+|++|++.
T Consensus 237 ~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp TSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred CCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence 888887665 45566777777777777776
No 75
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.2e-28 Score=278.49 Aligned_cols=247 Identities=25% Similarity=0.228 Sum_probs=201.9
Q ss_pred EEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCC
Q 003368 35 TVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRN 114 (825)
Q Consensus 35 ~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 114 (825)
..++.+++++. .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|+|++..|..|.++++|++|+|++|
T Consensus 57 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp CEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 34566666665 4665554 68999999999999888999999999999999999999888899999999999999999
Q ss_pred CCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEccc-CcCcccCCcccccccccceecCcCcCCccccC
Q 003368 115 KLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAY-NSLGGNIPSSLGQLKELKSLGLGGTIPPSIYN 193 (825)
Q Consensus 115 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i~~ 193 (825)
+|++..+..|..+++|++|+|++|++++..+..|.++++|+.|+|++ |.++...+..|.++++|++|
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L------------ 201 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL------------ 201 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE------------
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE------------
Confidence 99988788899999999999999999987788899999999999998 45554445567777777777
Q ss_pred CCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccCccccCcCCCCCCcEE
Q 003368 194 LSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLAYL 273 (825)
Q Consensus 194 l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 273 (825)
++++|+++ .+|. +. .+++|+.|+|++|.+++..|..|.++++|+.|+|++|++.+..+..|..+++|+.|
T Consensus 202 -------~L~~n~l~-~~~~-~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 271 (452)
T 3zyi_A 202 -------NLGMCNIK-DMPN-LT-PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271 (452)
T ss_dssp -------ECTTSCCS-SCCC-CT-TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred -------ECCCCccc-cccc-cc-ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEE
Confidence 66667666 3443 22 67888888888888888888888888888888888888888888888888888888
Q ss_pred EcccccCCCCCCCccccccccccCCCCCEEEcccccccc
Q 003368 274 NVAINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKG 312 (825)
Q Consensus 274 ~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~ 312 (825)
++++|++.... +..+..+++|+.|+|++|.+..
T Consensus 272 ~L~~N~l~~~~------~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 272 NLAHNNLSSLP------HDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp ECCSSCCSCCC------TTSSTTCTTCCEEECCSSCEEC
T ss_pred ECCCCcCCccC------hHHhccccCCCEEEccCCCcCC
Confidence 88888887654 2345678888999999998874
No 76
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=4e-29 Score=264.24 Aligned_cols=231 Identities=22% Similarity=0.250 Sum_probs=172.1
Q ss_pred ceeecCCCCcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCC
Q 003368 24 GITCSPRHRRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYC 103 (825)
Q Consensus 24 g~~c~~~~~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 103 (825)
+++|... ..+.+|.+.+++. .+|..+ .++|++|+|++|++++..+..|..+++|++|+|++|+|++..|..|..+
T Consensus 5 ~C~C~~~--~~~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 79 (285)
T 1ozn_A 5 ACVCYNE--PKVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL 79 (285)
T ss_dssp TCEEECS--SSCEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CceECCC--CCeEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCc
Confidence 3445433 2366788888876 445544 4689999999999998888889999999999999999998889999999
Q ss_pred CCCCEEEcCCCC-CCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceec
Q 003368 104 SRLIGLYLGRNK-LEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLG 182 (825)
Q Consensus 104 ~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 182 (825)
++|++|+|++|+ ++...|..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|
T Consensus 80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L- 158 (285)
T 1ozn_A 80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL- 158 (285)
T ss_dssp TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-
T ss_pred cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEE-
Confidence 999999999997 887778899999999999999999998888889999999999999999987666666666666666
Q ss_pred CcCcCCccccCCCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccCcccc
Q 003368 183 LGGTIPPSIYNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGKLSV 262 (825)
Q Consensus 183 L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~ 262 (825)
++++|+++ .+|...+..+++|+.|+|++|.+++..|..|.++++|+.|+|++|++.+..+.
T Consensus 159 ------------------~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 219 (285)
T 1ozn_A 159 ------------------FLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE 219 (285)
T ss_dssp ------------------ECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred ------------------ECCCCccc-ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHH
Confidence 55666666 34443333667777777777777766666676777777777777666654443
Q ss_pred CcCCCCCCcEEEccccc
Q 003368 263 NFGDMKSLAYLNVAINN 279 (825)
Q Consensus 263 ~~~~l~~L~~L~ls~N~ 279 (825)
.+..+++|+.|++++|.
T Consensus 220 ~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 220 ALAPLRALQYLRLNDNP 236 (285)
T ss_dssp HHTTCTTCCEEECCSSC
T ss_pred HcccCcccCEEeccCCC
Confidence 34444444444444433
No 77
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1e-28 Score=264.04 Aligned_cols=277 Identities=21% Similarity=0.249 Sum_probs=172.2
Q ss_pred ceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccCccccCcCCCCCCcEEEccc
Q 003368 198 ANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLAYLNVAI 277 (825)
Q Consensus 198 ~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ls~ 277 (825)
+.++.+++.++ .+|..+. ++|++|+|++|.++.+.+..|.++++|++|+|++|++....
T Consensus 10 ~~l~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~----------------- 68 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG----------------- 68 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE-----------------
T ss_pred CEEEcCCCCcc-cCCCCCC---CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc-----------------
Confidence 34566666666 5665432 56777777777776555555666677777777666654221
Q ss_pred ccCCCCCCCccccccccccCCCCCEEEcccccccccCCCCcccccCCccccCCCCcCEEEcccCcccccCC-ccccCCCC
Q 003368 278 NNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALPHSIVSGSIPSEIGKLVSLYLIEMDHNQFEGKIP-EEMSRLQN 356 (825)
Q Consensus 278 N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~ 356 (825)
..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|++++..+ ..+..+++
T Consensus 69 -----------~~~~~~~~~~~L~~L~Ls~n~i~----------~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 127 (306)
T 2z66_A 69 -----------CCSQSDFGTTSLKYLDLSFNGVI----------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127 (306)
T ss_dssp -----------EEEHHHHSCSCCCEEECCSCSEE----------EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTT
T ss_pred -----------CcccccccccccCEEECCCCccc----------cChhhcCCCCCCCEEECCCCcccccccchhhhhccC
Confidence 00223344566666666666665 455556666777777777777665444 45667777
Q ss_pred CCEEEccccccccccCccccCCCCCcEEEcccCcccc-ccCCCCCCCCccceeecCCCCCccccchhhhccccccccccc
Q 003368 357 LQFLNMRHNQLSGEIPSSFGNLSSLVKLILGNNNLSG-VIPSSLGNLKQLALLHLFQNDLSGAIPEEIFNISHMSDSLNF 435 (825)
Q Consensus 357 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~g~ip~~~~~~~~l~~~l~l 435 (825)
|++|++++|.+.+..|..|..+++|++|++++|.+++ .+|..+..+++|+.|++++|++++.
T Consensus 128 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----------------- 190 (306)
T 2z66_A 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL----------------- 190 (306)
T ss_dssp CCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE-----------------
T ss_pred CCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCc-----------------
Confidence 7777777777776666667777777777777777765 4666677777777766666666532
Q ss_pred CCCccccCCCccccccccccEEeecCceecccCCccccCCCCCCEEEccCCcCCCCCCccccCCC-CCCEEECCCCcccc
Q 003368 436 ARNHLVGSIPPKIGNLKVLRMFVVSSNNLSGEIPSEIGSCFYLQEIYMAENFFRGSIPSSLVSLK-DLREIDLSQNNLSG 514 (825)
Q Consensus 436 ~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~-~L~~Ldls~N~l~~ 514 (825)
.|..++.+++|+.|++++|++++..+..+..+++|+.|++++|++++..|..+..++ +|++|++++|++++
T Consensus 191 --------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 191 --------SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp --------CTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred --------CHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 233445556666677777776665555666677777777777777777777777763 77777777777775
Q ss_pred ccCc--ccccc-cCceeeCCCCcceecCCC
Q 003368 515 KIPI--SLERL-PLEYLNLSFNDLEGQVPT 541 (825)
Q Consensus 515 ~~p~--~~~~l-~L~~l~ls~N~l~g~~p~ 541 (825)
..+. ....+ ..+.+.+..+.+....|.
T Consensus 263 ~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 263 TCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp SGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred ccChHHHHHHHHhhhhhhccccccccCCch
Confidence 4321 11111 234445555555555553
No 78
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=5.1e-30 Score=275.34 Aligned_cols=270 Identities=19% Similarity=0.191 Sum_probs=177.1
Q ss_pred CcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEc
Q 003368 32 RRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYL 111 (825)
Q Consensus 32 ~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 111 (825)
.+++..+++.+.+...+...+..+++|++|+|++|+|++..|..|+.+++|++|+|++|++++..| |..+++|++|+|
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 457777888888876666667777888888888888887777888888888888888888886655 888888888888
Q ss_pred CCCCCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcCCccc
Q 003368 112 GRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSI 191 (825)
Q Consensus 112 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i 191 (825)
++|+|++.. ..++|++|++++|++++..+.. +++|+.|++++|++++..|..|+.+++|++|
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L---------- 149 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYL---------- 149 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEE----------
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEE----------
Confidence 888887533 3478888888888888665544 5678888888888887666666666666555
Q ss_pred cCCCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccCccccCcCCCCCCc
Q 003368 192 YNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLA 271 (825)
Q Consensus 192 ~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 271 (825)
++++|.+++..|..+...+++|++|+|++|.+++..+ ...
T Consensus 150 ---------~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~----------------------------- 189 (317)
T 3o53_A 150 ---------DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVV----------------------------- 189 (317)
T ss_dssp ---------ECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCC-----------------------------
T ss_pred ---------ECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc--ccc-----------------------------
Confidence 5556666544444443345555555555555543211 111
Q ss_pred EEEcccccCCCCCCCccccccccccCCCCCEEEcccccccccCCCCcccccCCccccCCCCcCEEEcccCcccccCCccc
Q 003368 272 YLNVAINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALPHSIVSGSIPSEIGKLVSLYLIEMDHNQFEGKIPEEM 351 (825)
Q Consensus 272 ~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l~~l~~L~~L~L~~N~l~~~~p~~~ 351 (825)
+++|++|+|++|+++ .+|+.+..+++|+.|++++|+++ .+|..+
T Consensus 190 -------------------------l~~L~~L~Ls~N~l~----------~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~ 233 (317)
T 3o53_A 190 -------------------------FAKLKTLDLSSNKLA----------FMGPEFQSAAGVTWISLRNNKLV-LIEKAL 233 (317)
T ss_dssp -------------------------CTTCCEEECCSSCCC----------EECGGGGGGTTCSEEECTTSCCC-EECTTC
T ss_pred -------------------------cccCCEEECCCCcCC----------cchhhhcccCcccEEECcCCccc-chhhHh
Confidence 334444444445444 33444555555666666666665 345556
Q ss_pred cCCCCCCEEEccccccc-cccCccccCCCCCcEEEcc-cCccccccCC
Q 003368 352 SRLQNLQFLNMRHNQLS-GEIPSSFGNLSSLVKLILG-NNNLSGVIPS 397 (825)
Q Consensus 352 ~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls-~N~l~~~~p~ 397 (825)
..+++|++|+|++|.+. +.+|.++..+++|+.|+++ .+.++|..|.
T Consensus 234 ~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 66666666666666665 5556666666666666666 3445554443
No 79
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=4.6e-28 Score=272.64 Aligned_cols=247 Identities=25% Similarity=0.226 Sum_probs=210.8
Q ss_pred EEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCC
Q 003368 35 TVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRN 114 (825)
Q Consensus 35 ~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 114 (825)
..++.+++++. .+|..+. ++++.|+|++|+|++..+..|.++++|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 45677777775 5666654 68999999999999888899999999999999999999888899999999999999999
Q ss_pred CCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccC-cCcccCCcccccccccceecCcCcCCccccC
Q 003368 115 KLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYN-SLGGNIPSSLGQLKELKSLGLGGTIPPSIYN 193 (825)
Q Consensus 115 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~~~p~~i~~ 193 (825)
+|+.+.+..|..+++|++|+|++|++++..+..|.++++|+.|+|++| .++...+..|.++++|++|
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L------------ 190 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL------------ 190 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE------------
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee------------
Confidence 999887788999999999999999999888889999999999999984 5554455567777777777
Q ss_pred CCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccCccccCcCCCCCCcEE
Q 003368 194 LSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLAYL 273 (825)
Q Consensus 194 l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 273 (825)
++++|+++ .+|. + ..+++|+.|+|++|++++..|..|.++++|+.|+|++|++.+..+..|..+++|+.|
T Consensus 191 -------~L~~n~l~-~~~~-~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 260 (440)
T 3zyj_A 191 -------NLAMCNLR-EIPN-L-TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260 (440)
T ss_dssp -------ECTTSCCS-SCCC-C-TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEE
T ss_pred -------cCCCCcCc-cccc-c-CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEE
Confidence 66677776 5554 3 378899999999999998888899999999999999999998888889999999999
Q ss_pred EcccccCCCCCCCccccccccccCCCCCEEEcccccccc
Q 003368 274 NVAINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKG 312 (825)
Q Consensus 274 ~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~ 312 (825)
++++|+++... +..+..+++|+.|+|++|.+..
T Consensus 261 ~L~~N~l~~~~------~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 261 NLAHNNLTLLP------HDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp ECTTSCCCCCC------TTTTSSCTTCCEEECCSSCEEC
T ss_pred ECCCCCCCccC------hhHhccccCCCEEEcCCCCccC
Confidence 99999988655 3356778899999999999884
No 80
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=2.3e-28 Score=263.36 Aligned_cols=225 Identities=19% Similarity=0.272 Sum_probs=172.0
Q ss_pred CCCCCEEEcccccccccCCCCcccccCCccccCCCCcCEEEcccCcccccCCccccCCCCCCEEEccccccccccCcccc
Q 003368 297 CSNLSFLNLVANQFKGALPHSIVSGSIPSEIGKLVSLYLIEMDHNQFEGKIPEEMSRLQNLQFLNMRHNQLSGEIPSSFG 376 (825)
Q Consensus 297 l~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 376 (825)
.++++.|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..++.+++|++|+|++|++. .+|..++
T Consensus 80 ~~~l~~L~L~~n~l~----------~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~ 147 (328)
T 4fcg_A 80 QPGRVALELRSVPLP----------QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIA 147 (328)
T ss_dssp STTCCEEEEESSCCS----------SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGG
T ss_pred ccceeEEEccCCCch----------hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHh
Confidence 356777777777776 56666777777777777777777 67777777777777777777777 6677777
Q ss_pred CCCCCcEEEcccCccccccCCCCCC---------CCccceeecCCCCCccccchhhhcccccccccccCCCccccCCCcc
Q 003368 377 NLSSLVKLILGNNNLSGVIPSSLGN---------LKQLALLHLFQNDLSGAIPEEIFNISHMSDSLNFARNHLVGSIPPK 447 (825)
Q Consensus 377 ~l~~L~~L~Ls~N~l~~~~p~~~~~---------l~~L~~L~L~~N~l~g~ip~~~~~~~~l~~~l~l~~N~l~~~~p~~ 447 (825)
.+++|++|+|++|++.+.+|..++. +++|++|++++|+++ .+|..+..+..+ +.|++++|++++ +|+.
T Consensus 148 ~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L-~~L~L~~N~l~~-l~~~ 224 (328)
T 4fcg_A 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL-KSLKIRNSPLSA-LGPA 224 (328)
T ss_dssp GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTC-CEEEEESSCCCC-CCGG
T ss_pred cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCC-CEEEccCCCCCc-Cchh
Confidence 7777777777777777777766654 777777777777777 677777776666 577777777774 6667
Q ss_pred ccccccccEEeecCceecccCCccccCCCCCCEEEccCCcCCCCCCccccCCCCCCEEECCCCccccccCcccccc-cCc
Q 003368 448 IGNLKVLRMFVVSSNNLSGEIPSEIGSCFYLQEIYMAENFFRGSIPSSLVSLKDLREIDLSQNNLSGKIPISLERL-PLE 526 (825)
Q Consensus 448 ~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~~L~~Ldls~N~l~~~~p~~~~~l-~L~ 526 (825)
++.+++|+.|++++|++.+.+|..++.+++|+.|++++|.+.+.+|..+..+++|+.||+++|++.+.+|..+..+ .++
T Consensus 225 l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence 7888888888888888888888888888888888888888888888888888888888888888888888888777 578
Q ss_pred eeeCCCCcce
Q 003368 527 YLNLSFNDLE 536 (825)
Q Consensus 527 ~l~ls~N~l~ 536 (825)
.+++..|.+.
T Consensus 305 ~l~l~~~~~~ 314 (328)
T 4fcg_A 305 IILVPPHLQA 314 (328)
T ss_dssp EEECCGGGSC
T ss_pred EEeCCHHHHH
Confidence 8877765443
No 81
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=4.8e-30 Score=275.56 Aligned_cols=266 Identities=17% Similarity=0.160 Sum_probs=174.4
Q ss_pred EECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcC
Q 003368 85 LYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSL 164 (825)
Q Consensus 85 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 164 (825)
++++.+.+....+..+..+++|++|+|++|+|++..|..|..+++|++|+|++|++++..| |..+++|++|+|++|++
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l 92 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV 92 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEE
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcc
Confidence 3444444443333344444455555555555554444555555555555555555554333 55555555555555555
Q ss_pred cccCCcccccccccceecCcCcCCccccCCCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCC
Q 003368 165 GGNIPSSLGQLKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNAS 244 (825)
Q Consensus 165 ~~~~p~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 244 (825)
++.. ..++|++| ++++|++++..+. .+++|+.|++++|++++..+..|..++
T Consensus 93 ~~l~-----~~~~L~~L-------------------~l~~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~ 144 (317)
T 3o53_A 93 QELL-----VGPSIETL-------------------HAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRS 144 (317)
T ss_dssp EEEE-----ECTTCCEE-------------------ECCSSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGS
T ss_pred cccc-----CCCCcCEE-------------------ECCCCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccC
Confidence 4211 11222222 4444444422111 346677777777777776677777777
Q ss_pred CccEEEeecccccCccccCcCCCCCCcEEEcccccCCCCCCCccccccccccCCCCCEEEcccccccccCCCCcccccCC
Q 003368 245 NLQSLEILGNNFFGKLSVNFGDMKSLAYLNVAINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALPHSIVSGSIP 324 (825)
Q Consensus 245 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip 324 (825)
+|++|+|++|++.+..+..+ ...+++|++|+|++|.+++ +|
T Consensus 145 ~L~~L~Ls~N~l~~~~~~~~-----------------------------~~~l~~L~~L~L~~N~l~~----------~~ 185 (317)
T 3o53_A 145 RVQYLDLKLNEIDTVNFAEL-----------------------------AASSDTLEHLNLQYNFIYD----------VK 185 (317)
T ss_dssp SEEEEECTTSCCCEEEGGGG-----------------------------GGGTTTCCEEECTTSCCCE----------EE
T ss_pred CCCEEECCCCCCCcccHHHH-----------------------------hhccCcCCEEECCCCcCcc----------cc
Confidence 77777777777665432211 2356778888888888874 33
Q ss_pred ccccCCCCcCEEEcccCcccccCCccccCCCCCCEEEccccccccccCccccCCCCCcEEEcccCccc-cccCCCCCCCC
Q 003368 325 SEIGKLVSLYLIEMDHNQFEGKIPEEMSRLQNLQFLNMRHNQLSGEIPSSFGNLSSLVKLILGNNNLS-GVIPSSLGNLK 403 (825)
Q Consensus 325 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~ 403 (825)
....+++|+.|++++|++++. |..+..+++|++|+|++|++. .+|..+..+++|++|++++|.+. +.+|..+..++
T Consensus 186 -~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~ 262 (317)
T 3o53_A 186 -GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262 (317)
T ss_dssp -CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCH
T ss_pred -cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccc
Confidence 233588999999999999965 555999999999999999999 57888999999999999999998 78888899999
Q ss_pred ccceeecC-CCCCccccchh
Q 003368 404 QLALLHLF-QNDLSGAIPEE 422 (825)
Q Consensus 404 ~L~~L~L~-~N~l~g~ip~~ 422 (825)
+|+.++++ .+.++|..|..
T Consensus 263 ~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 263 RVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp HHHHHHHHHHHHHHSSSSCC
T ss_pred cceEEECCCchhccCCchhc
Confidence 99999998 45666665544
No 82
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=4.2e-31 Score=309.65 Aligned_cols=422 Identities=13% Similarity=0.084 Sum_probs=300.0
Q ss_pred CcEEEEECCCCCC---ccccCcCCC------------CCCCCCEEEcCCCcccccCCccccCC--CCCCEEECCCCc-CC
Q 003368 32 RRVTVLDLKSKGL---IGSLSPQIG------------NLSFLREIHLSNNTIQGKIPGEIGRL--FRLEALYLSHNS-LV 93 (825)
Q Consensus 32 ~~l~~l~L~~n~l---~~~~~~~~~------------~l~~L~~L~Ls~N~l~~~~p~~~~~l--~~L~~L~Ls~N~-l~ 93 (825)
++++.|+|+++.. .+.+|..++ .+++|++|+|++|.+++..+..+..+ .+|++|+|++|. ++
T Consensus 73 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~ 152 (592)
T 3ogk_B 73 PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFT 152 (592)
T ss_dssp TTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEE
T ss_pred CCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcC
Confidence 5699999977532 134554444 78999999999999987777777664 459999999987 22
Q ss_pred C-CCCcCCCCCCCCCEEEcCCCCCCCC----CChhhhcccccceeeccccccc----cccCccCCCCCCCCEEEcccCcC
Q 003368 94 G-EIPGNLSYCSRLIGLYLGRNKLEGS----IPSEFVSLYNLKELAIQENNLT----GGIPHFLGNITSLEAISLAYNSL 164 (825)
Q Consensus 94 ~-~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l 164 (825)
. .++.....+++|++|+|++|.+++. ++..+..+++|++|++++|.++ +.++..+.++++|+.|+|++|.+
T Consensus 153 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 232 (592)
T 3ogk_B 153 TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232 (592)
T ss_dssp HHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred HHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence 1 1223335789999999999999866 4456678999999999999997 34556677899999999999999
Q ss_pred cccCCcccccccccceecCcCcCCccccCCCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCC
Q 003368 165 GGNIPSSLGQLKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNAS 244 (825)
Q Consensus 165 ~~~~p~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 244 (825)
.+ +|..+..+++|++|++++... .+ -.+..+..+. .+++|+.|+++++.. +.+|..+..++
T Consensus 233 ~~-l~~~~~~~~~L~~L~l~~~~~-~~---------------~~~~~~~~l~-~~~~L~~L~l~~~~~-~~l~~~~~~~~ 293 (592)
T 3ogk_B 233 LE-LVGFFKAAANLEEFCGGSLNE-DI---------------GMPEKYMNLV-FPRKLCRLGLSYMGP-NEMPILFPFAA 293 (592)
T ss_dssp GG-GHHHHHHCTTCCEEEECBCCC-CT---------------TCTTSSSCCC-CCTTCCEEEETTCCT-TTGGGGGGGGG
T ss_pred HH-HHHHHhhhhHHHhhccccccc-cc---------------chHHHHHHhh-ccccccccCccccch-hHHHHHHhhcC
Confidence 85 678899999999996653100 00 0012222333 678999999998643 45677888999
Q ss_pred CccEEEeecccccCccc-cCcCCCCCCcEEEcccccCCCCCCCccccccccccCCCCCEEEccc-----------ccccc
Q 003368 245 NLQSLEILGNNFFGKLS-VNFGDMKSLAYLNVAINNLGSGESDEMSFIHSLANCSNLSFLNLVA-----------NQFKG 312 (825)
Q Consensus 245 ~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~-----------N~l~~ 312 (825)
+|++|+|++|.+.+... ..+..+++|+.|+++ +.+.. ..++.....+++|+.|++++ |.+++
T Consensus 294 ~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~-----~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~ 367 (592)
T 3ogk_B 294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGD-----RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ 367 (592)
T ss_dssp GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHH-----HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH
T ss_pred CCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCH-----HHHHHHHHhCCCCCEEEeecCccccccccccCccCH
Confidence 99999999999755433 346889999999998 44432 12233446789999999993 55553
Q ss_pred cCCCCcccccCCccccCCCCcCEEEcccCcccccCCccccC-CCCCCEEEcc----ccccccc-----cCccccCCCCCc
Q 003368 313 ALPHSIVSGSIPSEIGKLVSLYLIEMDHNQFEGKIPEEMSR-LQNLQFLNMR----HNQLSGE-----IPSSFGNLSSLV 382 (825)
Q Consensus 313 ~~~~~~~~~~ip~~l~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~Ls----~N~l~~~-----~p~~~~~l~~L~ 382 (825)
. .++.....+++|+.|+++.|++++..+..+.. +++|+.|+++ .|.+++. ++..+.++++|+
T Consensus 368 ~--------~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~ 439 (592)
T 3ogk_B 368 R--------GLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLR 439 (592)
T ss_dssp H--------HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCC
T ss_pred H--------HHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCC
Confidence 1 12233456889999999999999887777765 9999999997 7788763 444577799999
Q ss_pred EEEcccC--ccccccCCCCC-CCCccceeecCCCCCccccchhhhcccccccccccCCCccccCCCccccccccccEEee
Q 003368 383 KLILGNN--NLSGVIPSSLG-NLKQLALLHLFQNDLSGAIPEEIFNISHMSDSLNFARNHLVGSIPPKIGNLKVLRMFVV 459 (825)
Q Consensus 383 ~L~Ls~N--~l~~~~p~~~~-~l~~L~~L~L~~N~l~g~ip~~~~~~~~l~~~l~l~~N~l~~~~p~~~~~l~~L~~L~l 459 (825)
+|+++.+ .+++..+..+. .+++|+.|++++|.+++.- ++..+..+++|+.|++
T Consensus 440 ~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~------------------------~~~~~~~~~~L~~L~l 495 (592)
T 3ogk_B 440 RFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEG------------------------LMEFSRGCPNLQKLEM 495 (592)
T ss_dssp EEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHH------------------------HHHHHTCCTTCCEEEE
T ss_pred EEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHH------------------------HHHHHhcCcccCeeec
Confidence 9999853 36654444443 3788999999999887421 1112234566777888
Q ss_pred cCceeccc-CCccccCCCCCCEEEccCCcCCCCCCccc-cCCCCCCEEECCCC
Q 003368 460 SSNNLSGE-IPSEIGSCFYLQEIYMAENFFRGSIPSSL-VSLKDLREIDLSQN 510 (825)
Q Consensus 460 s~N~l~g~-~p~~~~~l~~L~~L~l~~N~l~g~~p~~~-~~l~~L~~Ldls~N 510 (825)
++|.+++. ++..+..+++|+.|++++|++++.-...+ ..++.+....+..+
T Consensus 496 ~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 496 RGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp ESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred cCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 88877654 33444567778888888888775432222 34566655555444
No 83
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1e-30 Score=280.10 Aligned_cols=254 Identities=18% Similarity=0.202 Sum_probs=142.3
Q ss_pred CCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCC-CCCCcCCC-------CCCCCCEEEcCCCCCCCCCChh
Q 003368 52 IGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLV-GEIPGNLS-------YCSRLIGLYLGRNKLEGSIPSE 123 (825)
Q Consensus 52 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~p~~ 123 (825)
++..++|++|++++|.+ .+|..+... |+.|+|++|+++ ..+|..+. ++++|++|+|++|++++.+|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 45566777788888887 567666544 777777777773 34454444 5666777777777776666665
Q ss_pred h--hcccccceeeccccccccccCccCCCC-----CCCCEEEcccCcCcccCCcccccccccceecCcCcCCccccCCCC
Q 003368 124 F--VSLYNLKELAIQENNLTGGIPHFLGNI-----TSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSIYNLSL 196 (825)
Q Consensus 124 ~--~~l~~L~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i~~l~~ 196 (825)
+ ..+++|++|+|++|++++. |..|+.+ ++|++|+|++|++++..|..|+.+++|++|
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L--------------- 178 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTL--------------- 178 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEE---------------
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEE---------------
Confidence 4 6666777777777777655 6666655 667777777776666555555555555555
Q ss_pred CceeecCCccccccC--CchhhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccCccccCcCCCCCCcEEE
Q 003368 197 LANFSVPENRLHGSL--PPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLAYLN 274 (825)
Q Consensus 197 l~~l~l~~N~l~~~l--p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 274 (825)
++++|++.+.+ |..+ .+.++++|++|+|++|++.+....
T Consensus 179 ----~Ls~N~l~~~~~~~~~~-----------------------~~~~l~~L~~L~L~~N~l~~~~~~------------ 219 (312)
T 1wwl_A 179 ----DLSDNPELGERGLISAL-----------------------CPLKFPTLQVLALRNAGMETPSGV------------ 219 (312)
T ss_dssp ----ECCSCTTCHHHHHHHHS-----------------------CTTSCTTCCEEECTTSCCCCHHHH------------
T ss_pred ----ECCCCCcCcchHHHHHH-----------------------HhccCCCCCEEECCCCcCcchHHH------------
Confidence 44555554431 1111 124444455555555444321100
Q ss_pred cccccCCCCCCCccccccccccCCCCCEEEcccccccccCCCCcccccCC-ccccCCCCcCEEEcccCcccccCCccccC
Q 003368 275 VAINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALPHSIVSGSIP-SEIGKLVSLYLIEMDHNQFEGKIPEEMSR 353 (825)
Q Consensus 275 ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip-~~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 353 (825)
....+..+++|++|++++|++++ ..| ..+..+++|+.|+|++|+++ .+|..+.
T Consensus 220 ---------------~~~~~~~l~~L~~L~Ls~N~l~~---------~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~- 273 (312)
T 1wwl_A 220 ---------------CSALAAARVQLQGLDLSHNSLRD---------AAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP- 273 (312)
T ss_dssp ---------------HHHHHHTTCCCSEEECTTSCCCS---------SCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred ---------------HHHHHhcCCCCCEEECCCCcCCc---------ccchhhhhhcCCCCEEECCCCccC-hhhhhcc-
Confidence 00112233444444444444443 111 12333455555666666655 4454444
Q ss_pred CCCCCEEEccccccccccCccccCCCCCcEEEcccCcccc
Q 003368 354 LQNLQFLNMRHNQLSGEIPSSFGNLSSLVKLILGNNNLSG 393 (825)
Q Consensus 354 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 393 (825)
++|++|+|++|+|++. |. +..+++|++|+|++|++++
T Consensus 274 -~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred -CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 5666666666666644 44 6666666666666666654
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=1.6e-27 Score=249.61 Aligned_cols=218 Identities=26% Similarity=0.345 Sum_probs=173.6
Q ss_pred CCCceeeceeecCCCCcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCC
Q 003368 17 HHFCDWEGITCSPRHRRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEI 96 (825)
Q Consensus 17 ~~~C~~~g~~c~~~~~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 96 (825)
.++|.|.|+.|.+. .+++.+|++++++. .+|..+. ++|++|+|++|+|++..+..|.++++|++|+|++|+|+...
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 58999999999764 35678999999987 4666654 68999999999999877789999999999999999999888
Q ss_pred CcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccCCccccccc
Q 003368 97 PGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLK 176 (825)
Q Consensus 97 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 176 (825)
+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|+.+++|++|+|++|++++..+..|..++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 88889999999999999999988888899999999999999999988888899999999999999999866666566666
Q ss_pred ccceecCcCcCCccccCCCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccc
Q 003368 177 ELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNF 256 (825)
Q Consensus 177 ~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 256 (825)
+|++| ++++|+++ .+|+..+..+++|++|+|++|++++..+..|..+++|+.|+|++|.+
T Consensus 158 ~L~~L-------------------~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 158 SLKEL-------------------RLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TCCEE-------------------ECCSSCCS-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cccee-------------------EecCCcCc-EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 66665 55566665 34443333566667777777766665555666666666666666665
Q ss_pred cC
Q 003368 257 FG 258 (825)
Q Consensus 257 ~~ 258 (825)
..
T Consensus 218 ~c 219 (270)
T 2o6q_A 218 DC 219 (270)
T ss_dssp CC
T ss_pred eC
Confidence 43
No 85
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=99.95 E-value=2.1e-28 Score=265.66 Aligned_cols=147 Identities=27% Similarity=0.376 Sum_probs=128.3
Q ss_pred hcccccccceeccCCeeEEEEEEEc---CCCeEEEEEEeecccchhHHHHHHHHHHhhcC-CCCCceeEeecccccccCC
Q 003368 641 ATDGFSSTHLIGIGSFGSVYKGTFD---RDGTIVAIKVLNLQLQGASKSFAAECRALRNI-RHRNLVRVITSCSSIDFQG 716 (825)
Q Consensus 641 ~~~~f~~~~~ig~G~~g~Vy~~~~~---~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~ 716 (825)
..+.|+..+.||+|+||+||+|+.+ .+++.||||++.... ....+.+|+++++.+ +|||||+++++ |++
T Consensus 19 l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~--~~~~~~~E~~~l~~~~~h~nIv~l~~~-----~~~ 91 (361)
T 4f9c_A 19 LSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS--HPIRIAAELQCLTVAGGQDNVMGVKYC-----FRK 91 (361)
T ss_dssp GGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS--CHHHHHHHHHHHHHTCSBTTBCCCSEE-----EEE
T ss_pred ccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc--CHHHHHHHHHHHHHhcCCCCCceEEEE-----EEE
Confidence 4567999999999999999999874 457899999986543 345688999999998 69999999997 455
Q ss_pred CCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCC
Q 003368 717 NDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNN 796 (825)
Q Consensus 717 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~ 796 (825)
.+..|+||||+++|+|.+++. .+++.++..|+.|++.||+|||+. +||||||||+|||++.+
T Consensus 92 ~~~~~lvmE~~~g~~L~~~~~---------------~l~~~~~~~~~~qll~al~ylH~~---gIiHRDiKPeNiLl~~~ 153 (361)
T 4f9c_A 92 NDHVVIAMPYLEHESFLDILN---------------SLSFQEVREYMLNLFKALKRIHQF---GIVHRDVKPSNFLYNRR 153 (361)
T ss_dssp TTEEEEEEECCCCCCHHHHHT---------------TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETT
T ss_pred CCEEEEEEeCCCcccHHHHHc---------------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCcCCHHHeEEeCC
Confidence 788999999999999999882 478889999999999999999986 99999999999999877
Q ss_pred -CcEEEcccCccccccc
Q 003368 797 -LTAHVGDFGLARLRQE 812 (825)
Q Consensus 797 -~~~ki~DFGla~~~~~ 812 (825)
+.+||+|||+|+...+
T Consensus 154 ~~~~kl~DFGla~~~~~ 170 (361)
T 4f9c_A 154 LKKYALVDFGLAQGTHD 170 (361)
T ss_dssp TTEEEECCCTTCEECTT
T ss_pred CCeEEECcCCCCcccCC
Confidence 7999999999986643
No 86
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=99.95 E-value=1.9e-28 Score=282.16 Aligned_cols=163 Identities=21% Similarity=0.356 Sum_probs=142.9
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCeee
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFKA 721 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~~ 721 (825)
.++|+..+.||+|+||+||+|+.+.+|+.||||++........+.+.+|+++|+.++|||||+++++ |++++..|
T Consensus 156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~-----~~~~~~~~ 230 (573)
T 3uto_A 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDA-----FEDDNEMV 230 (573)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEE-----EECSSEEE
T ss_pred ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEE-----EEECCEEE
Confidence 3679999999999999999999999999999999987665566789999999999999999999998 45678899
Q ss_pred EEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCC--CcE
Q 003368 722 LVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNN--LTA 799 (825)
Q Consensus 722 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~--~~~ 799 (825)
+|||||+||+|.+++... ...+++.++..|+.||+.||+|||+. +|+||||||+|||++.+ +.+
T Consensus 231 iv~E~~~gg~L~~~i~~~-----------~~~l~e~~~~~~~~qi~~al~ylH~~---~iiHRDlKp~Nill~~~~~~~v 296 (573)
T 3uto_A 231 MIYEFMSGGELFEKVADE-----------HNKMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNEL 296 (573)
T ss_dssp EEEECCCCCBHHHHHTCT-----------TSCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCE
T ss_pred EEEeecCCCcHHHHHHHh-----------CCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhccccCCCCCCE
Confidence 999999999999998532 23688999999999999999999986 99999999999999854 899
Q ss_pred EEcccCcccccccCCCCCccccccC
Q 003368 800 HVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 800 ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
||+|||+|+.+... ....+.+||+
T Consensus 297 Kl~DFG~a~~~~~~-~~~~~~~GT~ 320 (573)
T 3uto_A 297 KLIDFGLTAHLDPK-QSVKVTTGTA 320 (573)
T ss_dssp EECCCSSCEECCTT-SEEEEECSSG
T ss_pred EEeeccceeEccCC-CceeeeEECc
Confidence 99999999987554 3345667886
No 87
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.3e-27 Score=252.63 Aligned_cols=223 Identities=22% Similarity=0.199 Sum_probs=202.1
Q ss_pred CCceeeceeecCC--CCcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCc-CCC
Q 003368 18 HFCDWEGITCSPR--HRRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNS-LVG 94 (825)
Q Consensus 18 ~~C~~~g~~c~~~--~~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~ 94 (825)
-.|++.+++..|. ..+++.|+|++|++.+..+..|..+++|++|+|++|++++..|.+|.++++|++|+|++|. ++.
T Consensus 16 ~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~ 95 (285)
T 1ozn_A 16 TSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 95 (285)
T ss_dssp EECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCC
T ss_pred EEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccc
Confidence 3477777777765 3689999999999998888899999999999999999999889999999999999999997 888
Q ss_pred CCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccCCccccc
Q 003368 95 EIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQ 174 (825)
Q Consensus 95 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 174 (825)
..|..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|+.+++|++|+|++|++++..+..|..
T Consensus 96 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 175 (285)
T 1ozn_A 96 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG 175 (285)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcC
Confidence 88999999999999999999999988999999999999999999999888888999999999999999999777777888
Q ss_pred ccccceecCcCcCCccccCCCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecc
Q 003368 175 LKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGN 254 (825)
Q Consensus 175 l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 254 (825)
+++|+.| ++++|.+++..|..+. .+++|+.|+|++|.+++..+..|..+++|+.|+|++|
T Consensus 176 l~~L~~L-------------------~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 176 LHSLDRL-------------------LLHQNRVAHVHPHAFR-DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp CTTCCEE-------------------ECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred ccccCEE-------------------ECCCCcccccCHhHcc-CcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence 8888777 7788888877677665 8999999999999999887788999999999999999
Q ss_pred cccCcc
Q 003368 255 NFFGKL 260 (825)
Q Consensus 255 ~l~~~~ 260 (825)
++....
T Consensus 236 ~~~c~~ 241 (285)
T 1ozn_A 236 PWVCDC 241 (285)
T ss_dssp CEECSG
T ss_pred CccCCC
Confidence 997654
No 88
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=99.94 E-value=1.6e-27 Score=265.74 Aligned_cols=172 Identities=24% Similarity=0.275 Sum_probs=145.6
Q ss_pred cHHHHHhhcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc---hhHHHHHHHHHHhhcCCCCCceeEeeccc
Q 003368 634 SYESLLKATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ---GASKSFAAECRALRNIRHRNLVRVITSCS 710 (825)
Q Consensus 634 ~~~~~~~~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~---~~~~~~~~E~~~l~~l~H~niv~l~~~~~ 710 (825)
.+.++...+++|+..++||+|+||+||+|+++.+|+.||||+++.... ...+.+.+|++++..++|||||+++++|
T Consensus 65 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~- 143 (437)
T 4aw2_A 65 KVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAF- 143 (437)
T ss_dssp HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEE-
T ss_pred hhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-
Confidence 455666678899999999999999999999998999999999975321 2233488999999999999999999985
Q ss_pred ccccCCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCC
Q 003368 711 SIDFQGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSN 790 (825)
Q Consensus 711 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~N 790 (825)
++++..|+|||||++|+|.+++... ...+++..+..++.|++.||+|||+. +||||||||+|
T Consensus 144 ----~~~~~~~lV~Ey~~gg~L~~~l~~~-----------~~~l~e~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~N 205 (437)
T 4aw2_A 144 ----QDDNNLYLVMDYYVGGDLLTLLSKF-----------EDRLPEEMARFYLAEMVIAIDSVHQL---HYVHRDIKPDN 205 (437)
T ss_dssp ----ECSSEEEEEECCCTTCBHHHHHHTT-----------TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGG
T ss_pred ----eeCCEEEEEEecCCCCcHHHHHHHc-----------cCCCCHHHHHHHHHHHHHHHHHHHhC---CeEecccCHHH
Confidence 4467899999999999999999531 23689999999999999999999985 89999999999
Q ss_pred eeecCCCcEEEcccCcccccccCCCC-CccccccC
Q 003368 791 ILLDNNLTAHVGDFGLARLRQEVPNN-QSSSVGDL 824 (825)
Q Consensus 791 ILl~~~~~~ki~DFGla~~~~~~~~~-~~~~~gt~ 824 (825)
||++.++.+||+|||+|+........ .+..+||+
T Consensus 206 ILl~~~g~vkL~DFGla~~~~~~~~~~~~~~~GT~ 240 (437)
T 4aw2_A 206 ILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTP 240 (437)
T ss_dssp EEECTTSCEEECCCTTCEECCTTSCEECCSCCSCG
T ss_pred eeEcCCCCEEEcchhhhhhcccCCCcccccccCCc
Confidence 99999999999999999877554332 34457775
No 89
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=5.8e-28 Score=274.47 Aligned_cols=254 Identities=19% Similarity=0.185 Sum_probs=167.5
Q ss_pred ECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCC
Q 003368 38 DLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLE 117 (825)
Q Consensus 38 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 117 (825)
+++...+...+.......++|++|+|++|.|++..|..|+.+++|++|+|++|.|++..| |..+++|++|+|++|+|+
T Consensus 16 ~~~~~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~ 93 (487)
T 3oja_A 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ 93 (487)
T ss_dssp SCCTTTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE
T ss_pred cCchhhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC
Confidence 344444443333344445578888888888888777888888888888888888887665 888888888888888887
Q ss_pred CCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcCCccccCCCCC
Q 003368 118 GSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSIYNLSLL 197 (825)
Q Consensus 118 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i~~l~~l 197 (825)
+..+ .++|++|++++|.+++..+.. +++|+.|+|++|++++..|..|+.+++|+.|
T Consensus 94 ~l~~-----~~~L~~L~L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L---------------- 149 (487)
T 3oja_A 94 ELLV-----GPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYL---------------- 149 (487)
T ss_dssp EEEE-----CTTCCEEECCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEE----------------
T ss_pred CCCC-----CCCcCEEECcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEE----------------
Confidence 5432 377888888888888665543 4678888888888887767666666666555
Q ss_pred ceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccCccccCcCCCCCCcEEEccc
Q 003368 198 ANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLAYLNVAI 277 (825)
Q Consensus 198 ~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ls~ 277 (825)
++++|.+++..|..++..+++|+.|+|++|.|++..+ +.
T Consensus 150 ---~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~------------------------------------ 188 (487)
T 3oja_A 150 ---DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QV------------------------------------ 188 (487)
T ss_dssp ---ECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CC------------------------------------
T ss_pred ---ECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cc------------------------------------
Confidence 5556666655555544345556666666555553311 11
Q ss_pred ccCCCCCCCccccccccccCCCCCEEEcccccccccCCCCcccccCCccccCCCCcCEEEcccCcccccCCccccCCCCC
Q 003368 278 NNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALPHSIVSGSIPSEIGKLVSLYLIEMDHNQFEGKIPEEMSRLQNL 357 (825)
Q Consensus 278 N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 357 (825)
.+++|+.|+|++|.++ .+|+.+..+++|+.|+|++|.+++ +|..+..+++|
T Consensus 189 ------------------~l~~L~~L~Ls~N~l~----------~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L 239 (487)
T 3oja_A 189 ------------------VFAKLKTLDLSSNKLA----------FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNL 239 (487)
T ss_dssp ------------------CCTTCCEEECCSSCCC----------EECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTC
T ss_pred ------------------cCCCCCEEECCCCCCC----------CCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCC
Confidence 2344555555555555 244445566666666666666664 55556667777
Q ss_pred CEEEccccccc-cccCccccCCCCCcEEEcc
Q 003368 358 QFLNMRHNQLS-GEIPSSFGNLSSLVKLILG 387 (825)
Q Consensus 358 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls 387 (825)
+.|++++|.+. +.+|.++..++.|+.++++
T Consensus 240 ~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 77777777776 5666667777777777665
No 90
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=7.3e-26 Score=262.34 Aligned_cols=267 Identities=26% Similarity=0.320 Sum_probs=203.9
Q ss_pred CCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccCccccCcCCCCCCcEEEc
Q 003368 196 LLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLAYLNV 275 (825)
Q Consensus 196 ~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 275 (825)
.++.+++++|.++ .+|..++ ++|+.|+|++|.|+. +|. .+++|++|+|++|++.+.. . .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp-~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLP-V---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSCCC-C---CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCcCC-C---CCCCCCEEEC
Confidence 3556688888887 7887664 788999999998885 444 5788999999999887543 3 6788888899
Q ss_pred ccccCCCCCCCccccccccccCCCCCEEEcccccccccCCCCcccccCCccccCCCCcCEEEcccCcccccCCccccCCC
Q 003368 276 AINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALPHSIVSGSIPSEIGKLVSLYLIEMDHNQFEGKIPEEMSRLQ 355 (825)
Q Consensus 276 s~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 355 (825)
++|.+...+. .+++|+.|++++|+++ .+|.. +++|++|++++|++++ +|. .++
T Consensus 109 s~N~l~~l~~----------~l~~L~~L~L~~N~l~----------~lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~ 161 (622)
T 3g06_A 109 FSNPLTHLPA----------LPSGLCKLWIFGNQLT----------SLPVL---PPGLQELSVSDNQLAS-LPA---LPS 161 (622)
T ss_dssp CSCCCCCCCC----------CCTTCCEEECCSSCCS----------CCCCC---CTTCCEEECCSSCCSC-CCC---CCT
T ss_pred cCCcCCCCCC----------CCCCcCEEECCCCCCC----------cCCCC---CCCCCEEECcCCcCCC-cCC---ccC
Confidence 8888876432 4578889999999887 45543 3788889999998885 443 356
Q ss_pred CCCEEEccccccccccCccccCCCCCcEEEcccCccccccCCCCCCCCccceeecCCCCCccccchhhhccccccccccc
Q 003368 356 NLQFLNMRHNQLSGEIPSSFGNLSSLVKLILGNNNLSGVIPSSLGNLKQLALLHLFQNDLSGAIPEEIFNISHMSDSLNF 435 (825)
Q Consensus 356 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~ip~~~~~~~~l~~~l~l 435 (825)
+|+.|++++|+|++ +| ..+++|+.|++++|++++ +|.. +++|+.|++++|.++ .+|..+ ..+ +.|++
T Consensus 162 ~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~~---~~L-~~L~L 228 (622)
T 3g06_A 162 ELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPALP---SGL-KELIV 228 (622)
T ss_dssp TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCCC---TTC-CEEEC
T ss_pred CCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCCC---CCC-CEEEc
Confidence 78888999999884 55 446888899999999885 4443 467888889999888 566532 233 67888
Q ss_pred CCCccccCCCccccccccccEEeecCceecccCCccccCCCCCCEEEccCCcCCCCCCccccCCCCCCEEECCCCccccc
Q 003368 436 ARNHLVGSIPPKIGNLKVLRMFVVSSNNLSGEIPSEIGSCFYLQEIYMAENFFRGSIPSSLVSLKDLREIDLSQNNLSGK 515 (825)
Q Consensus 436 ~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~l~~L~~Ldls~N~l~~~ 515 (825)
++|++++ +| ..+++|+.|++++|+|+ .+|. .+++|+.|+|++|+++ .+|..+..+++|+.|+|++|++++.
T Consensus 229 s~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 229 SGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp CSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred cCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCc
Confidence 8888875 55 45577888888888888 5666 5677888889888888 7788888888888999999988888
Q ss_pred cCcccccc
Q 003368 516 IPISLERL 523 (825)
Q Consensus 516 ~p~~~~~l 523 (825)
+|..+..+
T Consensus 300 ~~~~l~~L 307 (622)
T 3g06_A 300 TLQALREI 307 (622)
T ss_dssp HHHHHHHH
T ss_pred CHHHHHhc
Confidence 88766554
No 91
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=99.94 E-value=1.3e-26 Score=249.35 Aligned_cols=173 Identities=25% Similarity=0.308 Sum_probs=147.5
Q ss_pred ccccHHHHHhhccc----------ccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCC
Q 003368 631 RKVSYESLLKATDG----------FSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHR 700 (825)
Q Consensus 631 ~~~~~~~~~~~~~~----------f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~ 700 (825)
..++++++..+++. |+..+.||+|+||.||+|+...+|+.||||++........+.+.+|++++++++||
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ 102 (321)
T 2c30_A 23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHF 102 (321)
T ss_dssp --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCT
T ss_pred CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCC
Confidence 45777777776653 66678999999999999999889999999999876666677899999999999999
Q ss_pred CceeEeecccccccCCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 003368 701 NLVRVITSCSSIDFQGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEP 780 (825)
Q Consensus 701 niv~l~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ 780 (825)
||++++++|.. .+..++||||+++|+|.+++.. ..++|.++..++.|+++||+|||+. +
T Consensus 103 niv~~~~~~~~-----~~~~~lv~e~~~~~~L~~~l~~-------------~~l~~~~~~~i~~qi~~~L~~LH~~---~ 161 (321)
T 2c30_A 103 NVVEMYKSYLV-----GEELWVLMEFLQGGALTDIVSQ-------------VRLNEEQIATVCEAVLQALAYLHAQ---G 161 (321)
T ss_dssp TBCCEEEEEEE-----TTEEEEEECCCCSCBHHHHHTT-------------CCCCHHHHHHHHHHHHHHHHHHHHT---T
T ss_pred CcceEEEEEEE-----CCEEEEEEecCCCCCHHHHHHh-------------cCCCHHHHHHHHHHHHHHHHHHHHC---C
Confidence 99999998643 5678999999999999999842 2589999999999999999999985 9
Q ss_pred eeecCCCCCCeeecCCCcEEEcccCcccccccCCCCCccccccC
Q 003368 781 TIHCDLKPSNILLDNNLTAHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 781 ivHrdlk~~NILl~~~~~~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
|+||||||+||+++.++.+||+|||+++............+||+
T Consensus 162 ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~ 205 (321)
T 2c30_A 162 VIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTP 205 (321)
T ss_dssp EECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCG
T ss_pred eecCCCCHHHEEECCCCcEEEeeeeeeeecccCccccccccCCc
Confidence 99999999999999999999999999998765544444555654
No 92
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=6.9e-28 Score=273.82 Aligned_cols=234 Identities=20% Similarity=0.177 Sum_probs=164.8
Q ss_pred CCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcc
Q 003368 81 RLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLA 160 (825)
Q Consensus 81 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 160 (825)
+|++|+|++|.|++..|..|..+++|++|+|++|.|++..| |..+++|++|+|++|.|++..+ .++|+.|+|+
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence 56666666666665555555555555555555555554433 5555555555555555553322 1455555555
Q ss_pred cCcCcccCCcccccccccceecCcCcCCccccCCCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccc
Q 003368 161 YNSLGGNIPSSLGQLKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAF 240 (825)
Q Consensus 161 ~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 240 (825)
+|.+++.. +. .+++|+.|+|++|.+++..|..|
T Consensus 108 ~N~l~~~~-------------------------------------------~~----~l~~L~~L~L~~N~l~~~~~~~~ 140 (487)
T 3oja_A 108 NNNISRVS-------------------------------------------CS----RGQGKKNIYLANNKITMLRDLDE 140 (487)
T ss_dssp SSCCCCEE-------------------------------------------EC----CCSSCEEEECCSSCCCSGGGBCG
T ss_pred CCcCCCCC-------------------------------------------cc----ccCCCCEEECCCCCCCCCCchhh
Confidence 55554321 11 34567777777777777777777
Q ss_pred cCCCCccEEEeecccccCccccCcCCCCCCcEEEcccccCCCCCCCccccccccc-cCCCCCEEEcccccccccCCCCcc
Q 003368 241 SNASNLQSLEILGNNFFGKLSVNFGDMKSLAYLNVAINNLGSGESDEMSFIHSLA-NCSNLSFLNLVANQFKGALPHSIV 319 (825)
Q Consensus 241 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~ 319 (825)
..+++|+.|+|++|.+.+..|. .+. .+++|+.|+|++|.+++
T Consensus 141 ~~l~~L~~L~Ls~N~l~~~~~~------------------------------~l~~~l~~L~~L~Ls~N~l~~------- 183 (487)
T 3oja_A 141 GCRSRVQYLDLKLNEIDTVNFA------------------------------ELAASSDTLEHLNLQYNFIYD------- 183 (487)
T ss_dssp GGGSSEEEEECTTSCCCEEEGG------------------------------GGGGGTTTCCEEECTTSCCCE-------
T ss_pred cCCCCCCEEECCCCCCCCcChH------------------------------HHhhhCCcccEEecCCCcccc-------
Confidence 7788888888888877665532 332 56778888888888874
Q ss_pred cccCCccccCCCCcCEEEcccCcccccCCccccCCCCCCEEEccccccccccCccccCCCCCcEEEcccCccc-cccCCC
Q 003368 320 SGSIPSEIGKLVSLYLIEMDHNQFEGKIPEEMSRLQNLQFLNMRHNQLSGEIPSSFGNLSSLVKLILGNNNLS-GVIPSS 398 (825)
Q Consensus 320 ~~~ip~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~ 398 (825)
+| ....+++|+.|+|++|.+++.+| .+..+++|++|+|++|.|++ +|..+..+++|+.|++++|.+. +.+|..
T Consensus 184 ---~~-~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 184 ---VK-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp ---EE-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred ---cc-ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 22 23458999999999999997555 59999999999999999995 7888999999999999999998 777888
Q ss_pred CCCCCccceeecC
Q 003368 399 LGNLKQLALLHLF 411 (825)
Q Consensus 399 ~~~l~~L~~L~L~ 411 (825)
+..++.|+.++++
T Consensus 258 ~~~l~~L~~l~~~ 270 (487)
T 3oja_A 258 FSKNQRVQTVAKQ 270 (487)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HHhCCCCcEEecc
Confidence 8999999998886
No 93
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=99.94 E-value=1.1e-26 Score=250.92 Aligned_cols=163 Identities=26% Similarity=0.346 Sum_probs=140.9
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc---chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL---QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGND 718 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~---~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~ 718 (825)
.++|+..+.||+|+||+||+|+.+.+|+.||||+++... ....+.+.+|+++++.++||||+++++++ +..+
T Consensus 4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~-----~~~~ 78 (337)
T 1o6l_A 4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAF-----QTHD 78 (337)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEE-----ECSS
T ss_pred hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEE-----EeCC
Confidence 467999999999999999999998899999999997642 23456788999999999999999999984 4567
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..++||||+++|+|.+++.. ...+++.++..++.|++.||+|||+. +|+||||||+|||++.++.
T Consensus 79 ~~~lv~E~~~gg~L~~~l~~------------~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~ 143 (337)
T 1o6l_A 79 RLCFVMEYANGGELFFHLSR------------ERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGH 143 (337)
T ss_dssp EEEEEEECCTTCBHHHHHHH------------HSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSC
T ss_pred EEEEEEeCCCCCcHHHHHHh------------cCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCCHHHEEECCCCC
Confidence 89999999999999998842 24688999999999999999999986 9999999999999999999
Q ss_pred EEEcccCcccccccCCCCCccccccC
Q 003368 799 AHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 799 ~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
+||+|||+|+..........+.+||+
T Consensus 144 vkL~DFG~a~~~~~~~~~~~~~~gt~ 169 (337)
T 1o6l_A 144 IKITDFGLCKEGISDGATMKTFCGTP 169 (337)
T ss_dssp EEECCCTTCBCSCCTTCCBCCCEECG
T ss_pred EEEeeccchhhcccCCCcccccccCh
Confidence 99999999997554444445566765
No 94
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=2.9e-26 Score=241.01 Aligned_cols=204 Identities=21% Similarity=0.221 Sum_probs=106.8
Q ss_pred CCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeecc
Q 003368 57 FLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQ 136 (825)
Q Consensus 57 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 136 (825)
+|++|+|++|++++..+..|.++++|++|+|++|+|++..+..|..+++|++|+|++|++++..+..|.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555555444455555555555555555555555555555555555555555555555555555555555555
Q ss_pred ccccccccCccCCCCCCCCEEEcccCcCccc-CCcccccccccceecCcCcCCccccCCCCCceeecCCccccccCCchh
Q 003368 137 ENNLTGGIPHFLGNITSLEAISLAYNSLGGN-IPSSLGQLKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLPPSL 215 (825)
Q Consensus 137 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~~ 215 (825)
+|++++..+..|+.+++|++|+|++|++++. +|..|..+++|++| ++++|++++..+..+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L-------------------~Ls~N~l~~~~~~~~ 169 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL-------------------DLSSNKIQSIYCTDL 169 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE-------------------ECCSSCCCEECGGGG
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE-------------------ECCCCCCCcCCHHHh
Confidence 5555554444555555555555555555542 35555555555544 334444442222222
Q ss_pred hhcCCCCc----EEEcccccCCCCCCccccCCCCccEEEeecccccCccccCcCCCCCCcEEEcccccCC
Q 003368 216 GLTLSNLQ----LFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLAYLNVAINNLG 281 (825)
Q Consensus 216 ~~~l~~L~----~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~ 281 (825)
. .+++|+ .|++++|.+++..+..|.. .+|+.|+|++|++.+..+..|..+++|+.|++++|.+.
T Consensus 170 ~-~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 170 R-VLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp H-HHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred h-hhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 1 333333 5555555555444443332 25555555555555555555555556666666655554
No 95
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=99.94 E-value=1.7e-26 Score=245.58 Aligned_cols=162 Identities=26% Similarity=0.365 Sum_probs=142.5
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCeee
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFKA 721 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~~ 721 (825)
.++|...+.||+|+||+||+|+...+|+.||||++........+.+.+|+.++++++|||||++++++. .++..+
T Consensus 19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-----~~~~~~ 93 (297)
T 3fxz_A 19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYL-----VGDELW 93 (297)
T ss_dssp GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----ETTEEE
T ss_pred hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEE-----ECCEEE
Confidence 356999999999999999999998999999999998766666778999999999999999999999854 356789
Q ss_pred EEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcEEE
Q 003368 722 LVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTAHV 801 (825)
Q Consensus 722 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ki 801 (825)
+||||+++|+|.+++.. ..+++.++..++.|++.||+|||+. +|+||||||+|||++.++.+||
T Consensus 94 lv~e~~~~~~L~~~~~~-------------~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl 157 (297)
T 3fxz_A 94 VVMEYLAGGSLTDVVTE-------------TCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKL 157 (297)
T ss_dssp EEEECCTTCBHHHHHHH-------------SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEE
T ss_pred EEEECCCCCCHHHHHhh-------------cCCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEECCCCCEEE
Confidence 99999999999999842 2578899999999999999999986 9999999999999999999999
Q ss_pred cccCcccccccCCCCCccccccC
Q 003368 802 GDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 802 ~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
+|||+|+............+||+
T Consensus 158 ~Dfg~~~~~~~~~~~~~~~~gt~ 180 (297)
T 3fxz_A 158 TDFGFCAQITPEQSKRSTMVGTP 180 (297)
T ss_dssp CCCTTCEECCSTTCCBCCCCSCG
T ss_pred eeCCCceecCCcccccCCccCCc
Confidence 99999998766554455556664
No 96
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=99.94 E-value=1.2e-26 Score=252.35 Aligned_cols=163 Identities=25% Similarity=0.337 Sum_probs=135.5
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc---chhHHHHHHHHHHhhcC-CCCCceeEeecccccccCCC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL---QGASKSFAAECRALRNI-RHRNLVRVITSCSSIDFQGN 717 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~---~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~ 717 (825)
.++|+..++||+|+||+||+|+.+.+|+.||||+++... ....+.+.+|+++++.+ +|||||++++++ ++.
T Consensus 22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~-----~~~ 96 (353)
T 3txo_A 22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCF-----QTP 96 (353)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEE-----ECS
T ss_pred hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEE-----EeC
Confidence 467999999999999999999999999999999997642 23456788999999988 699999999984 456
Q ss_pred CeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCC
Q 003368 718 DFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNL 797 (825)
Q Consensus 718 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~ 797 (825)
+..|+||||+++|+|.+++.. ...+++.++..++.|++.||+|||+. +|+||||||+|||++.++
T Consensus 97 ~~~~lv~E~~~gg~L~~~l~~------------~~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NILl~~~g 161 (353)
T 3txo_A 97 DRLFFVMEFVNGGDLMFHIQK------------SRRFDEARARFYAAEIISALMFLHDK---GIIYRDLKLDNVLLDHEG 161 (353)
T ss_dssp SEEEEEEECCCSCBHHHHHHH------------HSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTS
T ss_pred CEEEEEEeCCCCCcHHHHHHH------------cCCCCHHHHHHHHHHHHHHHHHHHHC---CCcccCCCHHHEEECCCC
Confidence 789999999999999999842 24689999999999999999999986 999999999999999999
Q ss_pred cEEEcccCcccccccCCCCCccccccC
Q 003368 798 TAHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 798 ~~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
.+||+|||+|+..........+.+||+
T Consensus 162 ~ikL~DFG~a~~~~~~~~~~~~~~gt~ 188 (353)
T 3txo_A 162 HCKLADFGMCKEGICNGVTTATFCGTP 188 (353)
T ss_dssp CEEECCCTTCBCSCC---------CCG
T ss_pred CEEEccccceeecccCCccccccCCCc
Confidence 999999999997655444556667775
No 97
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=99.94 E-value=9e-27 Score=257.86 Aligned_cols=173 Identities=24% Similarity=0.308 Sum_probs=145.9
Q ss_pred ccHHHHHhhcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc---chhHHHHHHHHHHhhcCCCCCceeEeecc
Q 003368 633 VSYESLLKATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL---QGASKSFAAECRALRNIRHRNLVRVITSC 709 (825)
Q Consensus 633 ~~~~~~~~~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~---~~~~~~~~~E~~~l~~l~H~niv~l~~~~ 709 (825)
+.+.+.....++|+..++||+|+||+||+|+.+.+|+.||||++++.. ....+.+.+|++++.+++|||||++++++
T Consensus 51 ~~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~ 130 (412)
T 2vd5_A 51 VRLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAF 130 (412)
T ss_dssp HHHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEE
T ss_pred hhhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEE
Confidence 345556667789999999999999999999998899999999997532 12234588999999999999999999984
Q ss_pred cccccCCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCC
Q 003368 710 SSIDFQGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPS 789 (825)
Q Consensus 710 ~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~ 789 (825)
++.+..|+||||+++|+|.+++.. ....+++..+..++.|++.||+|||+. +||||||||+
T Consensus 131 -----~~~~~~~lVmE~~~gg~L~~~l~~-----------~~~~l~~~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~ 191 (412)
T 2vd5_A 131 -----QDENYLYLVMEYYVGGDLLTLLSK-----------FGERIPAEMARFYLAEIVMAIDSVHRL---GYVHRDIKPD 191 (412)
T ss_dssp -----ECSSEEEEEECCCCSCBHHHHHHH-----------HSSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGG
T ss_pred -----eeCCEEEEEEcCCCCCcHHHHHHh-----------cCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccCHH
Confidence 457789999999999999999842 123689999999999999999999985 9999999999
Q ss_pred CeeecCCCcEEEcccCcccccccCCC-CCccccccC
Q 003368 790 NILLDNNLTAHVGDFGLARLRQEVPN-NQSSSVGDL 824 (825)
Q Consensus 790 NILl~~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~ 824 (825)
|||++.++++||+|||+|+....... .....+||+
T Consensus 192 NILld~~g~vkL~DFGla~~~~~~~~~~~~~~~Gt~ 227 (412)
T 2vd5_A 192 NILLDRCGHIRLADFGSCLKLRADGTVRSLVAVGTP 227 (412)
T ss_dssp GEEECTTSCEEECCCTTCEECCTTSCEECSSCCSCG
T ss_pred HeeecCCCCEEEeechhheeccCCCccccceecccc
Confidence 99999999999999999998765433 233457775
No 98
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=99.94 E-value=1.7e-26 Score=254.15 Aligned_cols=164 Identities=23% Similarity=0.307 Sum_probs=140.6
Q ss_pred hcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc---hhHHHHHHHHHHhhcC-CCCCceeEeecccccccCC
Q 003368 641 ATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ---GASKSFAAECRALRNI-RHRNLVRVITSCSSIDFQG 716 (825)
Q Consensus 641 ~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~---~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~ 716 (825)
..++|+..++||+|+||+||+|+.+.+++.||||++++... ...+.+.+|..++.++ +|||||++++++ ++
T Consensus 50 ~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~-----~~ 124 (396)
T 4dc2_A 50 GLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCF-----QT 124 (396)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEE-----EC
T ss_pred ChhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEE-----EE
Confidence 34679999999999999999999999999999999986532 2234578899999887 899999999984 45
Q ss_pred CCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCC
Q 003368 717 NDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNN 796 (825)
Q Consensus 717 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~ 796 (825)
.+..++||||+++|+|.+++.. ...+++.++..++.|++.||+|||+. +||||||||+|||++.+
T Consensus 125 ~~~~~lV~E~~~gg~L~~~l~~------------~~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~ 189 (396)
T 4dc2_A 125 ESRLFFVIEYVNGGDLMFHMQR------------QRKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSE 189 (396)
T ss_dssp SSEEEEEEECCTTCBHHHHHHH------------HSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTT
T ss_pred CCEEEEEEEcCCCCcHHHHHHH------------cCCCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEECCC
Confidence 7789999999999999998842 24689999999999999999999986 99999999999999999
Q ss_pred CcEEEcccCcccccccCCCCCccccccC
Q 003368 797 LTAHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 797 ~~~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
+.+||+|||+|+..........+.+||+
T Consensus 190 g~ikL~DFGla~~~~~~~~~~~~~~gt~ 217 (396)
T 4dc2_A 190 GHIKLTDYGMCKEGLRPGDTTSTFCGTP 217 (396)
T ss_dssp SCEEECCCTTCBCCCCTTCCBCCCCBCG
T ss_pred CCEEEeecceeeecccCCCccccccCCc
Confidence 9999999999997554444556677876
No 99
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=99.94 E-value=2.1e-26 Score=249.36 Aligned_cols=165 Identities=23% Similarity=0.363 Sum_probs=140.8
Q ss_pred hhcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc---chhHHHHHHHHHHhhcC-CCCCceeEeecccccccC
Q 003368 640 KATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL---QGASKSFAAECRALRNI-RHRNLVRVITSCSSIDFQ 715 (825)
Q Consensus 640 ~~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~---~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~ 715 (825)
...++|...++||+|+||+||+|+.+.+|+.||||+++... ....+.+.+|.+++..+ +||||+++++++ +
T Consensus 14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~-----~ 88 (345)
T 1xjd_A 14 LKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTF-----Q 88 (345)
T ss_dssp --CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEE-----E
T ss_pred CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEE-----E
Confidence 34578999999999999999999999999999999997642 23456688899999887 899999999984 4
Q ss_pred CCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecC
Q 003368 716 GNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDN 795 (825)
Q Consensus 716 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~ 795 (825)
+.+..|+||||+++|+|.+++.. ...+++.++..++.|++.||+|||+. +|+||||||+|||++.
T Consensus 89 ~~~~~~lv~E~~~gg~L~~~l~~------------~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~ 153 (345)
T 1xjd_A 89 TKENLFFVMEYLNGGDLMYHIQS------------CHKFDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDK 153 (345)
T ss_dssp CSSEEEEEEECCTTCBHHHHHHH------------HSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECT
T ss_pred eCCEEEEEEeCCCCCcHHHHHHH------------cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCChhhEEECC
Confidence 56789999999999999999842 24689999999999999999999986 9999999999999999
Q ss_pred CCcEEEcccCcccccccCCCCCccccccC
Q 003368 796 NLTAHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 796 ~~~~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
++.+||+|||+|+..........+.+||+
T Consensus 154 ~g~vkL~DFG~a~~~~~~~~~~~~~~gt~ 182 (345)
T 1xjd_A 154 DGHIKIADFGMCKENMLGDAKTNTFCGTP 182 (345)
T ss_dssp TSCEEECCCTTCBCCCCTTCCBCCCCSCG
T ss_pred CCCEEEeEChhhhhcccCCCcccCCCCCc
Confidence 99999999999997654444455667775
No 100
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=99.94 E-value=7.4e-27 Score=258.38 Aligned_cols=169 Identities=24% Similarity=0.315 Sum_probs=143.4
Q ss_pred HHHHHhhcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc---chhHHHHHHHHHHhhcCCCCCceeEeecccc
Q 003368 635 YESLLKATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL---QGASKSFAAECRALRNIRHRNLVRVITSCSS 711 (825)
Q Consensus 635 ~~~~~~~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~---~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~ 711 (825)
..++....++|...++||+|+||+||+|+.+.+|+.||||+++... ....+.+.+|+++++.++|||||+++++|
T Consensus 61 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~-- 138 (410)
T 3v8s_A 61 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAF-- 138 (410)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEE--
T ss_pred HHhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEE--
Confidence 3455566789999999999999999999999999999999997532 12234588999999999999999999984
Q ss_pred cccCCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCe
Q 003368 712 IDFQGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNI 791 (825)
Q Consensus 712 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NI 791 (825)
++++..|+||||+++|+|.+++.. ..+++..+..++.|++.||+|||+. +||||||||+||
T Consensus 139 ---~~~~~~~lV~E~~~gg~L~~~l~~-------------~~~~e~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NI 199 (410)
T 3v8s_A 139 ---QDDRYLYMVMEYMPGGDLVNLMSN-------------YDVPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNM 199 (410)
T ss_dssp ---ECSSEEEEEECCCTTEEHHHHHHH-------------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGE
T ss_pred ---EECCEEEEEEeCCCCCcHHHHHHc-------------CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHe
Confidence 457789999999999999998842 2578889999999999999999986 999999999999
Q ss_pred eecCCCcEEEcccCcccccccCCC-CCccccccC
Q 003368 792 LLDNNLTAHVGDFGLARLRQEVPN-NQSSSVGDL 824 (825)
Q Consensus 792 Ll~~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~ 824 (825)
|++.++.+||+|||+|+....... ...+.+||+
T Consensus 200 Ll~~~g~ikL~DFG~a~~~~~~~~~~~~~~~gt~ 233 (410)
T 3v8s_A 200 LLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTP 233 (410)
T ss_dssp EECTTSCEEECCCTTCEECCTTSEEECCSCCSCG
T ss_pred eECCCCCEEEeccceeEeeccCCcccccCCcCCc
Confidence 999999999999999997755432 234566775
No 101
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=99.94 E-value=3.7e-26 Score=244.57 Aligned_cols=153 Identities=27% Similarity=0.437 Sum_probs=136.3
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCeee
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFKA 721 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~~ 721 (825)
.++|...+.||+|+||+||+|++..+|+.||||++........+.|.+|++++++++||||++++++|. +++..+
T Consensus 9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-----~~~~~~ 83 (310)
T 3s95_A 9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLY-----KDKRLN 83 (310)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEE-----ETTEEE
T ss_pred hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEe-----cCCeeE
Confidence 456888999999999999999999899999999987665666788999999999999999999999964 356789
Q ss_pred EEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcEEE
Q 003368 722 LVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTAHV 801 (825)
Q Consensus 722 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ki 801 (825)
+||||+++|+|.+++... ...++|.++..++.|+++||+|||+. +|+||||||+||+++.++.+||
T Consensus 84 lv~e~~~~~~L~~~l~~~-----------~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Nil~~~~~~~kl 149 (310)
T 3s95_A 84 FITEYIKGGTLRGIIKSM-----------DSQYPWSQRVSFAKDIASGMAYLHSM---NIIHRDLNSHNCLVRENKNVVV 149 (310)
T ss_dssp EEEECCTTCBHHHHHHHC-----------CTTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEECTTSCEEE
T ss_pred EEEEecCCCcHHHHHHhc-----------cCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCcCeEEECCCCCEEE
Confidence 999999999999998531 24689999999999999999999986 8999999999999999999999
Q ss_pred cccCcccccccC
Q 003368 802 GDFGLARLRQEV 813 (825)
Q Consensus 802 ~DFGla~~~~~~ 813 (825)
+|||+|+.....
T Consensus 150 ~Dfg~~~~~~~~ 161 (310)
T 3s95_A 150 ADFGLARLMVDE 161 (310)
T ss_dssp CCCTTCEECC--
T ss_pred eecccceecccc
Confidence 999999987543
No 102
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=99.93 E-value=3.8e-26 Score=247.75 Aligned_cols=163 Identities=23% Similarity=0.314 Sum_probs=140.1
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc---chhHHHHHHHHHHhhcC-CCCCceeEeecccccccCCC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL---QGASKSFAAECRALRNI-RHRNLVRVITSCSSIDFQGN 717 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~---~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~ 717 (825)
.++|+..+.||+|+||.||+|+.+.+|+.||||++.... ....+.+.+|++++.++ +|||||++++++ +..
T Consensus 8 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~-----~~~ 82 (345)
T 3a8x_A 8 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCF-----QTE 82 (345)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEE-----ECS
T ss_pred hhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEE-----EeC
Confidence 357899999999999999999999999999999998653 23345688999999988 899999999984 456
Q ss_pred CeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCC
Q 003368 718 DFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNL 797 (825)
Q Consensus 718 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~ 797 (825)
+..|+||||+++|+|.+++.. ...+++..+..++.|++.||+|||+. +|+||||||+|||++.++
T Consensus 83 ~~~~lv~e~~~gg~L~~~l~~------------~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g 147 (345)
T 3a8x_A 83 SRLFFVIEYVNGGDLMFHMQR------------QRKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEG 147 (345)
T ss_dssp SEEEEEECCCCSCBHHHHHHH------------HSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTS
T ss_pred CEEEEEEeCCCCCcHHHHHHH------------cCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCC
Confidence 789999999999999999842 24689999999999999999999986 999999999999999999
Q ss_pred cEEEcccCcccccccCCCCCccccccC
Q 003368 798 TAHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 798 ~~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
.+||+|||+|+..........+.+||+
T Consensus 148 ~~kL~DFG~a~~~~~~~~~~~~~~gt~ 174 (345)
T 3a8x_A 148 HIKLTDYGMCKEGLRPGDTTSTFCGTP 174 (345)
T ss_dssp CEEECCGGGCBCSCCTTCCBCCCCSCG
T ss_pred CEEEEeccccccccCCCCcccccCCCc
Confidence 999999999997544444455667775
No 103
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=99.93 E-value=4.6e-26 Score=245.26 Aligned_cols=163 Identities=23% Similarity=0.345 Sum_probs=139.8
Q ss_pred hcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc--chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCC
Q 003368 641 ATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL--QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGND 718 (825)
Q Consensus 641 ~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~ 718 (825)
..++|...+.||+|+||.||+|++..+|+.||||++.... ....+.+.+|+++++.++||||+++++++ ...+
T Consensus 13 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~-----~~~~ 87 (328)
T 3fe3_A 13 HIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVI-----ETEK 87 (328)
T ss_dssp EETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-----ECSS
T ss_pred ccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEE-----EECC
Confidence 3567999999999999999999998999999999997643 23456788999999999999999999985 3467
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..++||||+++|+|.+++.. ...+++.++..++.|+++||+|||+. +|+||||||+|||++.++.
T Consensus 88 ~~~lv~e~~~~~~L~~~l~~------------~~~l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~NIll~~~~~ 152 (328)
T 3fe3_A 88 TLYLIMEYASGGEVFDYLVA------------HGRMKEKEARSKFRQIVSAVQYCHQK---RIVHRDLKAENLLLDADMN 152 (328)
T ss_dssp EEEEEECCCTTCBHHHHHHH------------HCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSC
T ss_pred EEEEEEECCCCCcHHHHHHH------------cCCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCCHHHEEEcCCCC
Confidence 78999999999999999842 24688999999999999999999986 9999999999999999999
Q ss_pred EEEcccCcccccccCCCCCccccccC
Q 003368 799 AHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 799 ~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
+||+|||+|+...... .....+||+
T Consensus 153 ~kl~DFG~a~~~~~~~-~~~~~~gt~ 177 (328)
T 3fe3_A 153 IKIADFGFSNEFTVGG-KLDAFCGAP 177 (328)
T ss_dssp EEECSTTCCGGGSSSC-GGGTTSSSG
T ss_pred EEEeeccCceecCCCC-ccccccCCc
Confidence 9999999998765432 234445654
No 104
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=99.93 E-value=2.7e-26 Score=247.50 Aligned_cols=172 Identities=39% Similarity=0.626 Sum_probs=147.2
Q ss_pred hcccccHHHHHhhcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccch-hHHHHHHHHHHhhcCCCCCceeEee
Q 003368 629 ALRKVSYESLLKATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQG-ASKSFAAECRALRNIRHRNLVRVIT 707 (825)
Q Consensus 629 ~~~~~~~~~~~~~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~-~~~~~~~E~~~l~~l~H~niv~l~~ 707 (825)
....+++.++..+.++|...+.||+|+||.||+|+. .+|+.||||++...... ....+.+|++++++++||||+++++
T Consensus 16 ~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~ 94 (326)
T 3uim_A 16 QLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRL-ADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRG 94 (326)
T ss_dssp CCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECC-SSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCE
T ss_pred ccceecHHHHHHHhhccccceeEecCCCcEEEEEEe-cCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEE
Confidence 356789999999999999999999999999999986 57899999999765322 2346899999999999999999999
Q ss_pred cccccccCCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCC
Q 003368 708 SCSSIDFQGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLK 787 (825)
Q Consensus 708 ~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk 787 (825)
+|. .....++||||+++|+|.+++.... .....++|..+..|+.|++.||+|||+.+.++|+|||||
T Consensus 95 ~~~-----~~~~~~lv~e~~~~~~L~~~l~~~~--------~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlk 161 (326)
T 3uim_A 95 FCM-----TPTERLLVYPYMANGSVASCLRERP--------ESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVK 161 (326)
T ss_dssp EEC-----CSSCCEEEEECCTTCBHHHHHHCCS--------TTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCS
T ss_pred EEe-----cCCceEEEEEeccCCCHHHHHHhcc--------ccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCc
Confidence 864 3566799999999999999996431 223468999999999999999999999766699999999
Q ss_pred CCCeeecCCCcEEEcccCcccccccCC
Q 003368 788 PSNILLDNNLTAHVGDFGLARLRQEVP 814 (825)
Q Consensus 788 ~~NILl~~~~~~ki~DFGla~~~~~~~ 814 (825)
|+||+++.++.+||+|||+|+......
T Consensus 162 p~Nil~~~~~~~kl~Dfg~~~~~~~~~ 188 (326)
T 3uim_A 162 AANILLDEEFEAVVGDFGLAKLMDYKD 188 (326)
T ss_dssp GGGEEECTTCCEEECCCSSCEECCSSS
T ss_pred hhhEEECCCCCEEeccCccccccCccc
Confidence 999999999999999999999875443
No 105
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=99.93 E-value=4.2e-26 Score=247.79 Aligned_cols=163 Identities=21% Similarity=0.271 Sum_probs=140.6
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc---chhHHHHHHHHHHhhcC-CCCCceeEeecccccccCCC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL---QGASKSFAAECRALRNI-RHRNLVRVITSCSSIDFQGN 717 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~---~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~ 717 (825)
.++|...++||+|+||+||+|+.+.+|+.||||+++... ....+.+.+|.++++.+ +||||+++++++ ++.
T Consensus 19 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~-----~~~ 93 (353)
T 2i0e_A 19 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCF-----QTM 93 (353)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEE-----ECS
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEE-----EcC
Confidence 467999999999999999999998889999999997642 23456788999999988 799999999984 456
Q ss_pred CeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCC
Q 003368 718 DFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNL 797 (825)
Q Consensus 718 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~ 797 (825)
+..|+||||+++|+|.+++.. ...+++.++..++.|++.||+|||+. +|+||||||+|||++.++
T Consensus 94 ~~~~lv~E~~~gg~L~~~l~~------------~~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g 158 (353)
T 2i0e_A 94 DRLYFVMEYVNGGDLMYHIQQ------------VGRFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEG 158 (353)
T ss_dssp SEEEEEEECCCSCBHHHHHHH------------HSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTS
T ss_pred CEEEEEEeCCCCCcHHHHHHh------------cCCCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEEcCCC
Confidence 789999999999999999842 24689999999999999999999986 999999999999999999
Q ss_pred cEEEcccCcccccccCCCCCccccccC
Q 003368 798 TAHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 798 ~~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
.+||+|||+|+..........+.+||+
T Consensus 159 ~vkL~DFG~a~~~~~~~~~~~~~~gt~ 185 (353)
T 2i0e_A 159 HIKIADFGMCKENIWDGVTTKTFCGTP 185 (353)
T ss_dssp CEEECCCTTCBCCCCTTCCBCCCCSCG
T ss_pred cEEEEeCCcccccccCCcccccccCCc
Confidence 999999999997554444455667775
No 106
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=99.93 E-value=6.2e-26 Score=244.14 Aligned_cols=163 Identities=36% Similarity=0.581 Sum_probs=141.8
Q ss_pred ccHHHHHhhcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeeccccc
Q 003368 633 VSYESLLKATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSI 712 (825)
Q Consensus 633 ~~~~~~~~~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~ 712 (825)
+.+.++..++++|+..+.||+|+||.||+|++ .+|+.||||++........+.+.+|++++++++||||++++++|.
T Consensus 29 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-- 105 (321)
T 2qkw_B 29 VPLVDLEEATNNFDHKFLIGHGVFGKVYKGVL-RDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCD-- 105 (321)
T ss_dssp -CCSCCCCCCCCCSCCCCSCBCSSSEEEEEEC-TTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECC--
T ss_pred ecHHHHHHHHhccCccceeecCCCeeEEEEEE-CCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEc--
Confidence 44455667889999999999999999999997 578999999988766666778999999999999999999999853
Q ss_pred ccCCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCee
Q 003368 713 DFQGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNIL 792 (825)
Q Consensus 713 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NIL 792 (825)
..+..++||||+++|+|.+++.... .....++|.++..++.|+++||+|||+. +|+||||||+||+
T Consensus 106 ---~~~~~~lv~e~~~~~~L~~~l~~~~--------~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~ivH~dlkp~Nil 171 (321)
T 2qkw_B 106 ---ERNEMILIYKYMENGNLKRHLYGSD--------LPTMSMSWEQRLEICIGAARGLHYLHTR---AIIHRDVKSINIL 171 (321)
T ss_dssp ---CTTCCEEEEECCTTCBTGGGSSSSC--------CCSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCSTTEE
T ss_pred ---CCCeEEEEEEcCCCCcHHHHHhccC--------CCccccCHHHHHHHHHHHHHHHHHhcCC---CeecCCCCHHHEE
Confidence 3567899999999999999996431 1123689999999999999999999985 9999999999999
Q ss_pred ecCCCcEEEcccCccccccc
Q 003368 793 LDNNLTAHVGDFGLARLRQE 812 (825)
Q Consensus 793 l~~~~~~ki~DFGla~~~~~ 812 (825)
++.++.+||+|||+++....
T Consensus 172 ~~~~~~~kl~Dfg~~~~~~~ 191 (321)
T 2qkw_B 172 LDENFVPKITDFGISKKGTE 191 (321)
T ss_dssp ECTTCCEEECCCTTCEECSS
T ss_pred ECCCCCEEEeeccccccccc
Confidence 99999999999999987654
No 107
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=99.93 E-value=8.2e-26 Score=242.22 Aligned_cols=160 Identities=28% Similarity=0.367 Sum_probs=138.4
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc---chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL---QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGND 718 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~---~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~ 718 (825)
.++|+..+.||+|+||+||+|+...+|+.||||+++... ....+.+.+|+.+++.++|||||++++++ ++..
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~-----~~~~ 79 (318)
T 1fot_A 5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTF-----QDAQ 79 (318)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEE-----ECSS
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEE-----EeCC
Confidence 467899999999999999999998899999999997642 23456788999999999999999999984 4567
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..++||||+++|+|.+++.. ...+++..+..++.|++.||+|||+. +|+||||||+|||++.++.
T Consensus 80 ~~~lv~e~~~gg~L~~~l~~------------~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~ 144 (318)
T 1fot_A 80 QIFMIMDYIEGGELFSLLRK------------SQRFPNPVAKFYAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGH 144 (318)
T ss_dssp EEEEEECCCCSCBHHHHHHH------------TSSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTSC
T ss_pred EEEEEEeCCCCCCHHHHHHH------------cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChheEEEcCCCC
Confidence 89999999999999999842 24688999999999999999999985 9999999999999999999
Q ss_pred EEEcccCcccccccCCCCCccccccC
Q 003368 799 AHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 799 ~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
+||+|||+|+..... ..+.+||+
T Consensus 145 ~kL~Dfg~a~~~~~~---~~~~~gt~ 167 (318)
T 1fot_A 145 IKITDFGFAKYVPDV---TYTLCGTP 167 (318)
T ss_dssp EEECCCSSCEECSSC---BCCCCSCT
T ss_pred EEEeecCcceecCCc---cccccCCc
Confidence 999999999976442 34456665
No 108
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=99.93 E-value=6.5e-26 Score=245.56 Aligned_cols=164 Identities=26% Similarity=0.391 Sum_probs=133.3
Q ss_pred hcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc-hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCe
Q 003368 641 ATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ-GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDF 719 (825)
Q Consensus 641 ~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~-~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~ 719 (825)
..+.|...+.||+|+||+||+|++..+|+.||||++..... ...+.+.+|++++++++||||+++++++ ...+.
T Consensus 8 l~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~Ei~~l~~l~hpnIv~l~~~~-----~~~~~ 82 (347)
T 3zgw_A 8 LLKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKTEIEALKNLRHQHICQLYHVL-----ETANK 82 (347)
T ss_dssp TTTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC---CCHHHHHHHHHHTCCCTTBCCEEEEE-----ECSSE
T ss_pred HhcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccchHHHHHHHHHHHHHhCCCCCEeeEEEEE-----EeCCE
Confidence 34678999999999999999999999999999999976542 2345788999999999999999999985 34677
Q ss_pred eeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcE
Q 003368 720 KALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTA 799 (825)
Q Consensus 720 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ 799 (825)
.++||||+++|+|.+++.. ...+++.++..++.|++.||+|||+. +|+||||||+|||+++++.+
T Consensus 83 ~~lv~E~~~gg~L~~~l~~------------~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~ 147 (347)
T 3zgw_A 83 IFMVLEYCPGGELFDYIIS------------QDRLSEEETRVVFRQIVSAVAYVHSQ---GYAHRDLKPENLLFDEYHKL 147 (347)
T ss_dssp EEEEEECCTTCBHHHHHHH------------HSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCE
T ss_pred EEEEEeCCCCCCHHHHHHH------------cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCccHHHEEEcCCCCE
Confidence 8999999999999999842 24689999999999999999999986 99999999999999999999
Q ss_pred EEcccCcccccccCCC-CCccccccC
Q 003368 800 HVGDFGLARLRQEVPN-NQSSSVGDL 824 (825)
Q Consensus 800 ki~DFGla~~~~~~~~-~~~~~~gt~ 824 (825)
||+|||+|+....... ...+.+||+
T Consensus 148 kL~DFG~a~~~~~~~~~~~~~~~gt~ 173 (347)
T 3zgw_A 148 KLIDFGLCAKPKGNKDYHLQTCCGSL 173 (347)
T ss_dssp EECCCTTCBC--------------CG
T ss_pred EEEeccCcccccCCCCccccccCCcc
Confidence 9999999987654332 234445654
No 109
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=99.93 E-value=1.5e-25 Score=242.08 Aligned_cols=160 Identities=26% Similarity=0.398 Sum_probs=134.4
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc-hhHHHHHHHHHHhhcCCCCCceeEeeccccccc------
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ-GASKSFAAECRALRNIRHRNLVRVITSCSSIDF------ 714 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~-~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~------ 714 (825)
.++|+..+.||+|+||+||+|+++.+|+.||||+++.... ...+.+.+|++++++++|||||+++++|.....
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~ 84 (332)
T 3qd2_B 5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE 84 (332)
T ss_dssp HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence 3568899999999999999999988999999999975433 345789999999999999999999998753210
Q ss_pred ----------------------------------------------CCCCeeeEEEEccCCCChhhhccCCCCCCCcccc
Q 003368 715 ----------------------------------------------QGNDFKALVYQYMPNGSLENWLHPDAIPQTDEEN 748 (825)
Q Consensus 715 ----------------------------------------------~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~ 748 (825)
......++||||+++|+|.+++...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~--------- 155 (332)
T 3qd2_B 85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRR--------- 155 (332)
T ss_dssp HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTC---------
T ss_pred hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcc---------
Confidence 1122479999999999999999643
Q ss_pred hhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcEEEcccCcccccccC
Q 003368 749 DEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTAHVGDFGLARLRQEV 813 (825)
Q Consensus 749 ~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ki~DFGla~~~~~~ 813 (825)
......++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+|+.....
T Consensus 156 ~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~ 217 (332)
T 3qd2_B 156 CSLEDREHGVCLHIFIQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQD 217 (332)
T ss_dssp CSGGGSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECSCC
T ss_pred cCccchhhHHHHHHHHHHHHHHHHHHhC---CeeecCCCcccEEEeCCCCEEEeecCcccccccc
Confidence 1223467888999999999999999986 9999999999999999999999999999987654
No 110
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=3.4e-25 Score=232.90 Aligned_cols=224 Identities=22% Similarity=0.184 Sum_probs=193.8
Q ss_pred ceeeceeecCC--CCcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCC
Q 003368 20 CDWEGITCSPR--HRRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIP 97 (825)
Q Consensus 20 C~~~g~~c~~~--~~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 97 (825)
|...+++..|. ..+++.|+|++|++.+..+..|..+++|++|+|++|++++..+..|.++++|++|+|++|+|++..+
T Consensus 14 c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (276)
T 2z62_A 14 CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93 (276)
T ss_dssp CTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred ecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh
Confidence 44444444443 2579999999999998888899999999999999999998888899999999999999999999988
Q ss_pred cCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeeccccccccc-cCccCCCCCCCCEEEcccCcCcccCCccccccc
Q 003368 98 GNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQENNLTGG-IPHFLGNITSLEAISLAYNSLGGNIPSSLGQLK 176 (825)
Q Consensus 98 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 176 (825)
..|..+++|++|++++|++++..+..|..+++|++|++++|++++. +|..|.++++|++|+|++|++++..+..|..+.
T Consensus 94 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 173 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173 (276)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh
Confidence 9999999999999999999988777899999999999999999874 589999999999999999999988888888888
Q ss_pred ccceecCcCcCCccccCCCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccc
Q 003368 177 ELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNF 256 (825)
Q Consensus 177 ~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 256 (825)
+|+.+.+ .+++++|.+++ +|...+ ...+|+.|+|++|++++..+..|.++++|+.|+|++|++
T Consensus 174 ~L~~l~l---------------~L~ls~n~l~~-~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 174 QMPLLNL---------------SLDLSLNPMNF-IQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp TCTTCCE---------------EEECCSSCCCE-ECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred hccccce---------------eeecCCCcccc-cCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 7775421 45888999984 555555 456899999999999988888899999999999999999
Q ss_pred cCcc
Q 003368 257 FGKL 260 (825)
Q Consensus 257 ~~~~ 260 (825)
.+..
T Consensus 237 ~c~c 240 (276)
T 2z62_A 237 DCSC 240 (276)
T ss_dssp CCCT
T ss_pred cccC
Confidence 8654
No 111
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=99.93 E-value=7.5e-26 Score=247.59 Aligned_cols=164 Identities=32% Similarity=0.390 Sum_probs=132.7
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc---hhHHHHHHHHHH-hhcCCCCCceeEeecccccccCCC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ---GASKSFAAECRA-LRNIRHRNLVRVITSCSSIDFQGN 717 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~---~~~~~~~~E~~~-l~~l~H~niv~l~~~~~~~~~~~~ 717 (825)
.++|+..++||+|+||+||+|+.+.+++.||||+++.... ...+.+.+|..+ ++.++|||||++++++ ++.
T Consensus 37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~-----~~~ 111 (373)
T 2r5t_A 37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSF-----QTA 111 (373)
T ss_dssp GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEE-----ECS
T ss_pred hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEE-----EeC
Confidence 4679999999999999999999999999999999976532 233456777776 5778999999999984 456
Q ss_pred CeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCC
Q 003368 718 DFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNL 797 (825)
Q Consensus 718 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~ 797 (825)
+..|+||||+++|+|.+++.. ...+++.++..++.|++.||+|||+. +|+||||||+|||++.++
T Consensus 112 ~~~~lv~E~~~gg~L~~~l~~------------~~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g 176 (373)
T 2r5t_A 112 DKLYFVLDYINGGELFYHLQR------------ERCFLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQG 176 (373)
T ss_dssp SEEEEEEECCCSCBHHHHHHH------------HSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTS
T ss_pred CEEEEEEeCCCCCcHHHHHHh------------cCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCC
Confidence 789999999999999999842 24688889999999999999999986 999999999999999999
Q ss_pred cEEEcccCcccccccCCCCCccccccCC
Q 003368 798 TAHVGDFGLARLRQEVPNNQSSSVGDLE 825 (825)
Q Consensus 798 ~~ki~DFGla~~~~~~~~~~~~~~gt~~ 825 (825)
.+||+|||+|+..........+.+||++
T Consensus 177 ~ikL~DFG~a~~~~~~~~~~~~~~gt~~ 204 (373)
T 2r5t_A 177 HIVLTDFGLCKENIEHNSTTSTFCGTPE 204 (373)
T ss_dssp CEEECCCCBCGGGBCCCCCCCSBSCCCC
T ss_pred CEEEeeCccccccccCCCccccccCCcc
Confidence 9999999999976554445566678763
No 112
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=99.93 E-value=1.3e-25 Score=238.82 Aligned_cols=164 Identities=24% Similarity=0.369 Sum_probs=134.0
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc--------------------------hhHHHHHHHHHHhh
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ--------------------------GASKSFAAECRALR 695 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~--------------------------~~~~~~~~E~~~l~ 695 (825)
.++|...+.||+|+||.||+|+...+|+.||||++..... ...+.+.+|+++++
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 91 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK 91 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 4679999999999999999999988999999999975421 11346889999999
Q ss_pred cCCCCCceeEeecccccccCCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHh
Q 003368 696 NIRHRNLVRVITSCSSIDFQGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHH 775 (825)
Q Consensus 696 ~l~H~niv~l~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~ 775 (825)
+++||||+++++++.. ...+..++||||+++|+|.+++.. ..+++.++..++.|+++||+|||+
T Consensus 92 ~l~h~~iv~~~~~~~~---~~~~~~~lv~e~~~~~~l~~~~~~-------------~~~~~~~~~~~~~qi~~~l~~lH~ 155 (298)
T 2zv2_A 92 KLDHPNVVKLVEVLDD---PNEDHLYMVFELVNQGPVMEVPTL-------------KPLSEDQARFYFQDLIKGIEYLHY 155 (298)
T ss_dssp TCCCTTBCCEEEEEEC---SSSSEEEEEEECCTTCBSCCSSCS-------------SCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCCCeEEEEEEc---CCCCEEEEEEecCCCCcHHHHhhc-------------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998643 225678999999999999876532 368999999999999999999998
Q ss_pred cCCCCeeecCCCCCCeeecCCCcEEEcccCcccccccCCCCCccccccC
Q 003368 776 HCQEPTIHCDLKPSNILLDNNLTAHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 776 ~~~~~ivHrdlk~~NILl~~~~~~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
. +|+||||||+||+++.++.+||+|||+|+.............||+
T Consensus 156 ~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~ 201 (298)
T 2zv2_A 156 Q---KIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVGTP 201 (298)
T ss_dssp T---TEECCCCCGGGEEECTTSCEEECCCTTCEECSSSSCEECCCCSCG
T ss_pred C---CeeccCCCHHHEEECCCCCEEEecCCCccccccccccccCCcCCc
Confidence 6 899999999999999999999999999998765433333444543
No 113
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=99.93 E-value=8.2e-26 Score=247.76 Aligned_cols=162 Identities=26% Similarity=0.363 Sum_probs=139.9
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc---chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL---QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGND 718 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~---~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~ 718 (825)
.++|...+.||+|+||.||+|+...+|+.||||++.... ....+.+.+|++++++++|||||++++++ .+.+
T Consensus 14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~-----~~~~ 88 (384)
T 4fr4_A 14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSF-----QDEE 88 (384)
T ss_dssp GGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEE-----ECSS
T ss_pred hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEE-----EeCC
Confidence 357899999999999999999999999999999997542 23456789999999999999999999984 4567
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..++||||+++|+|.+++... ..+++..+..++.|++.||+|||+. +|+||||||+|||++.++.
T Consensus 89 ~~~lv~e~~~gg~L~~~l~~~------------~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~ 153 (384)
T 4fr4_A 89 DMFMVVDLLLGGDLRYHLQQN------------VHFKEETVKLFICELVMALDYLQNQ---RIIHRDMKPDNILLDEHGH 153 (384)
T ss_dssp EEEEEECCCTTEEHHHHHHTT------------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSC
T ss_pred EEEEEEecCCCCcHHHHHHhc------------CCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEECCCCC
Confidence 899999999999999998532 4689999999999999999999986 9999999999999999999
Q ss_pred EEEcccCcccccccCCCCCccccccC
Q 003368 799 AHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 799 ~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
+||+|||+|+..... ....+.+||+
T Consensus 154 vkL~DFG~a~~~~~~-~~~~~~~gt~ 178 (384)
T 4fr4_A 154 VHITDFNIAAMLPRE-TQITTMAGTK 178 (384)
T ss_dssp EEECCCTTCEECCTT-CCBCCCCSCG
T ss_pred EEEeccceeeeccCC-CceeccCCCc
Confidence 999999999987543 2334556664
No 114
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=99.93 E-value=9.6e-26 Score=240.99 Aligned_cols=168 Identities=32% Similarity=0.488 Sum_probs=129.1
Q ss_pred hhcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc--hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCC
Q 003368 640 KATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ--GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGN 717 (825)
Q Consensus 640 ~~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~--~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 717 (825)
...++|+..+.||+|+||+||+|++ +|+.||||++..... ...++|.+|++++++++||||+++++++. ..
T Consensus 34 i~~~~y~i~~~lG~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-----~~ 106 (309)
T 3p86_A 34 IPWCDLNIKEKIGAGSFGTVHRAEW--HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVT-----QP 106 (309)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEE--TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-----ST
T ss_pred CChhHceeeeEeecCCCeEEEEEEE--CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEE-----EC
Confidence 3456788999999999999999987 688999999876532 33467999999999999999999999853 45
Q ss_pred CeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCC
Q 003368 718 DFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNL 797 (825)
Q Consensus 718 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~ 797 (825)
+..++||||+++|+|.+++... .....+++.++..++.|+++||+|||+. .++|+||||||+||+++.++
T Consensus 107 ~~~~lv~e~~~~~~L~~~l~~~---------~~~~~~~~~~~~~i~~qi~~aL~~LH~~-~~~ivH~Dikp~NIll~~~~ 176 (309)
T 3p86_A 107 PNLSIVTEYLSRGSLYRLLHKS---------GAREQLDERRRLSMAYDVAKGMNYLHNR-NPPIVHRNLKSPNLLVDKKY 176 (309)
T ss_dssp TCCEEEEECCTTCBHHHHHHST---------THHHHSCHHHHHHHHHHHHHHHHHHHTS-SSCCCCTTCCGGGEEECTTC
T ss_pred CceEEEEecCCCCcHHHHHhhc---------CCCCCCCHHHHHHHHHHHHHHHHHHHcC-CCCEECCCCChhhEEEeCCC
Confidence 6689999999999999999643 1223589999999999999999999986 12399999999999999999
Q ss_pred cEEEcccCcccccccCCCCCccccccC
Q 003368 798 TAHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 798 ~~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
.+||+|||+|+.............||+
T Consensus 177 ~~kL~Dfg~a~~~~~~~~~~~~~~gt~ 203 (309)
T 3p86_A 177 TVKVCDFGLSRLKASTFLSSKSAAGTP 203 (309)
T ss_dssp CEEECCCC-----------------CC
T ss_pred cEEECCCCCCccccccccccccCCCCc
Confidence 999999999987655433334445554
No 115
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=99.93 E-value=1.9e-25 Score=243.40 Aligned_cols=162 Identities=24% Similarity=0.330 Sum_probs=138.9
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccch------hHHHHHHHHHHhhcCCCCCceeEeecccccccC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQG------ASKSFAAECRALRNIRHRNLVRVITSCSSIDFQ 715 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~------~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~ 715 (825)
.+.|...+.||+|+||.||+|+...+|+.||||++...... ..+.+.+|++++++++|||||++++++ .
T Consensus 11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~-----~ 85 (361)
T 2yab_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVY-----E 85 (361)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEE-----E
T ss_pred hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEE-----E
Confidence 45688999999999999999999999999999999765321 346799999999999999999999985 4
Q ss_pred CCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecC
Q 003368 716 GNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDN 795 (825)
Q Consensus 716 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~ 795 (825)
+....++||||+++|+|.+++... ..+++.++..++.|++.||+|||+. +|+||||||+||+++.
T Consensus 86 ~~~~~~lv~e~~~gg~L~~~l~~~------------~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~ 150 (361)
T 2yab_A 86 NRTDVVLILELVSGGELFDFLAQK------------ESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLD 150 (361)
T ss_dssp CSSEEEEEEECCCSCBHHHHHTTC------------SCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESC
T ss_pred eCCEEEEEEEcCCCCcHHHHHHhc------------CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEeC
Confidence 467899999999999999998532 3689999999999999999999986 9999999999999987
Q ss_pred CC----cEEEcccCcccccccCCCCCccccccC
Q 003368 796 NL----TAHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 796 ~~----~~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
++ .+||+|||+|+...... .....+||+
T Consensus 151 ~~~~~~~vkl~DFG~a~~~~~~~-~~~~~~gt~ 182 (361)
T 2yab_A 151 KNIPIPHIKLIDFGLAHEIEDGV-EFKNIFGTP 182 (361)
T ss_dssp TTSSSCCEEECCCSSCEECCTTC-CCCCCCSCG
T ss_pred CCCCccCEEEEecCCceEcCCCC-ccccCCCCc
Confidence 76 79999999999876542 234455664
No 116
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=99.93 E-value=1.6e-25 Score=243.24 Aligned_cols=160 Identities=27% Similarity=0.347 Sum_probs=138.3
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc---chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL---QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGND 718 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~---~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~ 718 (825)
.++|+..+.||+|+||.||+|+...+|+.||||++.... ....+.+.+|++++++++||||+++++++ .+.+
T Consensus 40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~-----~~~~ 114 (350)
T 1rdq_E 40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSF-----KDNS 114 (350)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEE-----ECSS
T ss_pred HHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEE-----EcCC
Confidence 367899999999999999999998899999999997542 23456788999999999999999999984 4567
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..|+||||+++|+|.+++.. ...+++.++..++.|++.||+|||+. +|+||||||+|||++.++.
T Consensus 115 ~~~lv~e~~~gg~L~~~l~~------------~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~ 179 (350)
T 1rdq_E 115 NLYMVMEYVAGGEMFSHLRR------------IGRFSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGY 179 (350)
T ss_dssp EEEEEEECCTTCBHHHHHHH------------HCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSC
T ss_pred EEEEEEcCCCCCcHHHHHHH------------cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCccceEEECCCCC
Confidence 89999999999999999842 24689999999999999999999986 9999999999999999999
Q ss_pred EEEcccCcccccccCCCCCccccccC
Q 003368 799 AHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 799 ~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
+||+|||+|+..... ..+.+||+
T Consensus 180 ~kL~DFg~a~~~~~~---~~~~~gt~ 202 (350)
T 1rdq_E 180 IQVTDFGFAKRVKGR---TWTLCGTP 202 (350)
T ss_dssp EEECCCTTCEECSSC---BCCCEECG
T ss_pred EEEcccccceeccCC---cccccCCc
Confidence 999999999976442 33445664
No 117
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=99.93 E-value=2e-25 Score=254.26 Aligned_cols=167 Identities=23% Similarity=0.316 Sum_probs=143.1
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc---hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ---GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGND 718 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~---~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~ 718 (825)
.++|...++||+|+||+||+|+.+.+|+.||||++..... ...+.+.+|++++++++|||||++++++ +...
T Consensus 184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~-----~~~~ 258 (543)
T 3c4z_A 184 EDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAF-----ETKT 258 (543)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEE-----ECSS
T ss_pred hhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEE-----eeCC
Confidence 4678999999999999999999988999999999975432 3346788999999999999999999984 4567
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..|+||||+++|+|.+++.... .....+++..+..++.||+.||+|||+. +|+||||||+|||++.++.
T Consensus 259 ~l~lVmE~~~gg~L~~~l~~~~--------~~~~~l~e~~~~~~~~qi~~aL~~LH~~---gIvHrDLKP~NILl~~~g~ 327 (543)
T 3c4z_A 259 DLCLVMTIMNGGDIRYHIYNVD--------EDNPGFQEPRAIFYTAQIVSGLEHLHQR---NIIYRDLKPENVLLDDDGN 327 (543)
T ss_dssp EEEEEECCCTTCBHHHHHHTSS--------TTSCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSC
T ss_pred EEEEEEEeccCCCHHHHHHHhh--------cccccccHHHHHHHHHHHHHHHHHHHHc---CCcccCCChHHEEEeCCCC
Confidence 8999999999999999986431 1224689999999999999999999986 9999999999999999999
Q ss_pred EEEcccCcccccccCCCCCccccccC
Q 003368 799 AHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 799 ~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
+||+|||+|+..........+.+||+
T Consensus 328 vkL~DFGla~~~~~~~~~~~~~~GT~ 353 (543)
T 3c4z_A 328 VRISDLGLAVELKAGQTKTKGYAGTP 353 (543)
T ss_dssp EEECCCTTCEECCTTCCCBCCCCSCT
T ss_pred EEEeecceeeeccCCCcccccccCCc
Confidence 99999999998766554445567876
No 118
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=2.1e-24 Score=225.88 Aligned_cols=205 Identities=24% Similarity=0.269 Sum_probs=174.8
Q ss_pred CCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeec
Q 003368 56 SFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAI 135 (825)
Q Consensus 56 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 135 (825)
...+.+++++|+++ .+|..+. ++|++|+|++|+|++..+..|..+++|++|+|++|+|+.+.+..|.++++|++|+|
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 35789999999999 5777665 68999999999999888889999999999999999999877778899999999999
Q ss_pred cccccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcCCccccCCCCCceeecCCccccccCCchh
Q 003368 136 QENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLPPSL 215 (825)
Q Consensus 136 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~~ 215 (825)
++|++++..+..|.++++|++|+|++|++++..+..|..+++|++| ++++|+++ .+|...
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-------------------~Ls~n~l~-~~~~~~ 152 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL-------------------SLGYNELQ-SLPKGV 152 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE-------------------ECCSSCCC-CCCTTT
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEE-------------------ECCCCcCC-ccCHhH
Confidence 9999998888889999999999999999998877778777777777 67778777 456655
Q ss_pred hhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccCccccCcCCCCCCcEEEcccccCCCC
Q 003368 216 GLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLAYLNVAINNLGSG 283 (825)
Q Consensus 216 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~ 283 (825)
+..+++|+.|+|++|++++..+..|.++++|+.|+|++|++.+..+..|..+++|+.|++++|.+...
T Consensus 153 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 55788999999999999888777888889999999999988877776777777777777777776543
No 119
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=99.92 E-value=1.3e-25 Score=244.52 Aligned_cols=166 Identities=20% Similarity=0.299 Sum_probs=138.0
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc-----hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCC
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ-----GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGN 717 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~-----~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 717 (825)
+.|...+.||+|+||+||+|+.+.+|+.||||++..... ...+.+.+|++++++++|||||++++++. .+
T Consensus 24 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~-----~~ 98 (351)
T 3c0i_A 24 DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYS-----SD 98 (351)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----ET
T ss_pred cceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEE-----eC
Confidence 458889999999999999999999999999999864321 13577999999999999999999999853 36
Q ss_pred CeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCC
Q 003368 718 DFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNL 797 (825)
Q Consensus 718 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~ 797 (825)
+..++||||+++|+|.+++... ......+++..+..++.|+++||+|||+. +|+||||||+|||++.++
T Consensus 99 ~~~~lv~e~~~g~~L~~~l~~~--------~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivHrDlkp~NIl~~~~~ 167 (351)
T 3c0i_A 99 GMLYMVFEFMDGADLCFEIVKR--------ADAGFVYSEAVASHYMRQILEALRYCHDN---NIIHRDVKPHCVLLASKE 167 (351)
T ss_dssp TEEEEEEECCSSCBHHHHHHHH--------HHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECSSS
T ss_pred CEEEEEEeCCCCCCHHHHHHHh--------cccCCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChHHeEEecCC
Confidence 7889999999999999887421 11223589999999999999999999986 999999999999998665
Q ss_pred c---EEEcccCcccccccCCCCCccccccC
Q 003368 798 T---AHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 798 ~---~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
. +||+|||+|+...+........+||+
T Consensus 168 ~~~~vkl~Dfg~a~~~~~~~~~~~~~~gt~ 197 (351)
T 3c0i_A 168 NSAPVKLGGFGVAIQLGESGLVAGGRVGTP 197 (351)
T ss_dssp TTCCEEECCCTTCEECCTTSCBCCCCCSCG
T ss_pred CCCcEEEecCcceeEecCCCeeecCCcCCc
Confidence 4 99999999998766544344556664
No 120
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=99.92 E-value=2.7e-25 Score=235.85 Aligned_cols=162 Identities=24% Similarity=0.385 Sum_probs=133.3
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc---chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCe
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL---QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDF 719 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~---~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~ 719 (825)
++|...+.||+|+||.||+|+...+++.||||.+.... ....+.|.+|++++++++||||+++++++ ..++.
T Consensus 11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~-----~~~~~ 85 (294)
T 4eqm_A 11 ERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVD-----EEDDC 85 (294)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEE-----ECSSE
T ss_pred ccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEee-----eeCCe
Confidence 56889999999999999999998899999999986543 23346789999999999999999999985 34677
Q ss_pred eeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcE
Q 003368 720 KALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTA 799 (825)
Q Consensus 720 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ 799 (825)
.++||||+++|+|.+++.. ...+++.++..++.|+++||+|||+. +|+||||||+||+++.++.+
T Consensus 86 ~~lv~e~~~g~~L~~~l~~------------~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~ 150 (294)
T 4eqm_A 86 YYLVMEYIEGPTLSEYIES------------HGPLSVDTAINFTNQILDGIKHAHDM---RIVHRDIKPQNILIDSNKTL 150 (294)
T ss_dssp EEEEEECCCSCBHHHHHHH------------HCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCE
T ss_pred EEEEEeCCCCCCHHHHHHh------------cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCE
Confidence 8999999999999999842 24689999999999999999999986 89999999999999999999
Q ss_pred EEcccCcccccccCCC-CCccccccC
Q 003368 800 HVGDFGLARLRQEVPN-NQSSSVGDL 824 (825)
Q Consensus 800 ki~DFGla~~~~~~~~-~~~~~~gt~ 824 (825)
||+|||+|+....... ......||+
T Consensus 151 kl~Dfg~~~~~~~~~~~~~~~~~gt~ 176 (294)
T 4eqm_A 151 KIFDFGIAKALSETSLTQTNHVLGTV 176 (294)
T ss_dssp EECCCSSSTTC-------------CC
T ss_pred EEEeCCCccccccccccccCccccCc
Confidence 9999999997754432 223334554
No 121
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=99.92 E-value=9.7e-26 Score=253.97 Aligned_cols=164 Identities=26% Similarity=0.337 Sum_probs=129.9
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc---chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL---QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGND 718 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~---~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~ 718 (825)
.++|+..+.||+|+||.||+|+...+|+.||||++.... ....+.+.+|+++++.++||||++++++|. ..+
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~-----~~~ 221 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQ-----THD 221 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEE-----ETT
T ss_pred hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEe-----eCC
Confidence 467999999999999999999999999999999997542 233456789999999999999999999864 366
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..++||||+++|+|.+++.. ...+++..+..++.|+++||+|||+. .+||||||||+|||++.++.
T Consensus 222 ~~~lv~e~~~~~~L~~~l~~------------~~~~~~~~~~~~~~qi~~aL~~LH~~--~giiHrDlkp~NIll~~~~~ 287 (446)
T 4ejn_A 222 RLCFVMEYANGGELFFHLSR------------ERVFSEDRARFYGAEIVSALDYLHSE--KNVVYRDLKLENLMLDKDGH 287 (446)
T ss_dssp EEEEEECCCSSCBHHHHHHH------------HSCCCHHHHHHHHHHHHHHHHHHHHH--TCCCCCCCCGGGEEECSSSC
T ss_pred EEEEEEeeCCCCcHHHHHHh------------cCCCCHHHHHHHHHHHHHHHHHHhhc--CCEEECCCCHHHEEECCCCC
Confidence 78999999999999998842 24689999999999999999999972 38999999999999999999
Q ss_pred EEEcccCcccccccCCCCCccccccC
Q 003368 799 AHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 799 ~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
+||+|||+|+..........+.+||+
T Consensus 288 ~kl~DFG~a~~~~~~~~~~~~~~gt~ 313 (446)
T 4ejn_A 288 IKITDFGLCKEGIKDGATMKTFCGTP 313 (446)
T ss_dssp EEECCCCCCCTTCC-----CCSSSCG
T ss_pred EEEccCCCceeccCCCcccccccCCc
Confidence 99999999997655444455566765
No 122
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=99.92 E-value=2.3e-25 Score=240.16 Aligned_cols=163 Identities=24% Similarity=0.329 Sum_probs=127.0
Q ss_pred cccccccceeccCCeeEEEEEEEc---CCCeEEEEEEeeccc----chhHHHHHHHHHHhhcCCCCCceeEeeccccccc
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFD---RDGTIVAIKVLNLQL----QGASKSFAAECRALRNIRHRNLVRVITSCSSIDF 714 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~---~~g~~vAvK~~~~~~----~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~ 714 (825)
.++|+..+.||+|+||.||+|+.. .+|+.||||+++... ......+.+|++++++++|||||++++++
T Consensus 16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~----- 90 (327)
T 3a62_A 16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAF----- 90 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEE-----
T ss_pred HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEE-----
Confidence 467899999999999999999984 588999999997642 12345678999999999999999999985
Q ss_pred CCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeec
Q 003368 715 QGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLD 794 (825)
Q Consensus 715 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~ 794 (825)
...+..++||||+++|+|.+++.. ...+++.++..++.|++.||+|||+. +|+||||||+|||++
T Consensus 91 ~~~~~~~lv~e~~~~~~L~~~l~~------------~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~Nill~ 155 (327)
T 3a62_A 91 QTGGKLYLILEYLSGGELFMQLER------------EGIFMEDTACFYLAEISMALGHLHQK---GIIYRDLKPENIMLN 155 (327)
T ss_dssp ECSSCEEEEEECCTTEEHHHHHHH------------HSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEEC
T ss_pred EcCCEEEEEEeCCCCCcHHHHHHh------------CCCCCHHHHHHHHHHHHHHHHHHHhC---CEEcccCCHHHeEEC
Confidence 346678999999999999999842 24688899999999999999999986 999999999999999
Q ss_pred CCCcEEEcccCcccccccCCCCCccccccC
Q 003368 795 NNLTAHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 795 ~~~~~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
.++.+||+|||+|+............+||+
T Consensus 156 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~ 185 (327)
T 3a62_A 156 HQGHVKLTDFGLCKESIHDGTVTHTFCGTI 185 (327)
T ss_dssp TTSCEEECCCSCC----------CTTSSCC
T ss_pred CCCcEEEEeCCcccccccCCccccccCCCc
Confidence 999999999999987654433344455664
No 123
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=99.92 E-value=2.8e-25 Score=238.96 Aligned_cols=151 Identities=23% Similarity=0.383 Sum_probs=131.5
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc-hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCee
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ-GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFK 720 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~-~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~ 720 (825)
.++|+..+.||+|+||+||+|+...+++.||||++..... ...+.+.+|+++++.++|||||++++++. .++..
T Consensus 6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~-----~~~~~ 80 (323)
T 3tki_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRR-----EGNIQ 80 (323)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEE-----CSSEE
T ss_pred hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEe-----cCCeE
Confidence 3678999999999999999999988999999999975432 23467889999999999999999999853 46778
Q ss_pred eEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcEE
Q 003368 721 ALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTAH 800 (825)
Q Consensus 721 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~k 800 (825)
++||||+++|+|.+++... ..+++.++..++.|+++||+|||+. +|+||||||+|||++.++.+|
T Consensus 81 ~lv~e~~~~~~L~~~l~~~------------~~~~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~k 145 (323)
T 3tki_A 81 YLFLEYCSGGELFDRIEPD------------IGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLK 145 (323)
T ss_dssp EEEEECCTTEEGGGGSBTT------------TBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEE
T ss_pred EEEEEcCCCCcHHHHHhhc------------CCCCHHHHHHHHHHHHHHHHHHHHC---CccccccchHHEEEeCCCCEE
Confidence 9999999999999998532 3589999999999999999999985 999999999999999999999
Q ss_pred EcccCccccccc
Q 003368 801 VGDFGLARLRQE 812 (825)
Q Consensus 801 i~DFGla~~~~~ 812 (825)
|+|||+|+....
T Consensus 146 l~Dfg~a~~~~~ 157 (323)
T 3tki_A 146 ISDFGLATVFRY 157 (323)
T ss_dssp ECCCTTCEECEE
T ss_pred EEEeeccceecc
Confidence 999999987653
No 124
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=99.92 E-value=3.3e-25 Score=237.96 Aligned_cols=168 Identities=27% Similarity=0.463 Sum_probs=125.1
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc-hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCee
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ-GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFK 720 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~-~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~ 720 (825)
.++|+..+.||+|+||.||+|+...+|+.||||+++.... ...+.+.+|++++++++|||||++++++ ..++..
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~-----~~~~~~ 78 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVI-----HTENKL 78 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEE-----CCTTEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEE-----EECCeE
Confidence 4578899999999999999999988999999999975532 2346788999999999999999999985 446788
Q ss_pred eEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcEE
Q 003368 721 ALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTAH 800 (825)
Q Consensus 721 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~k 800 (825)
++||||++ |+|.+++..... ......+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+|
T Consensus 79 ~lv~e~~~-~~L~~~l~~~~~------~~~~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~Dlkp~NIl~~~~~~~k 148 (317)
T 2pmi_A 79 TLVFEFMD-NDLKKYMDSRTV------GNTPRGLELNLVKYFQWQLLQGLAFCHEN---KILHRDLKPQNLLINKRGQLK 148 (317)
T ss_dssp EEEEECCC-CBHHHHHHHHHS------SSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEE
T ss_pred EEEEEecC-CCHHHHHHhccc------cccccCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCChHHeEEcCCCCEE
Confidence 99999998 699998853210 01123588999999999999999999985 999999999999999999999
Q ss_pred EcccCcccccccCCCCCccccccC
Q 003368 801 VGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 801 i~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
|+|||+|+............+||+
T Consensus 149 l~Dfg~~~~~~~~~~~~~~~~~t~ 172 (317)
T 2pmi_A 149 LGDFGLARAFGIPVNTFSSEVVTL 172 (317)
T ss_dssp ECCCSSCEETTSCCCCCCCCCSCC
T ss_pred ECcCccceecCCCcccCCCCcccc
Confidence 999999998754433334445553
No 125
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=99.92 E-value=4.8e-25 Score=246.70 Aligned_cols=163 Identities=21% Similarity=0.275 Sum_probs=138.1
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc--hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCe
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ--GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDF 719 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~--~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~ 719 (825)
.++|+..+.||+|+||.||+|+...+|+.||+|++..... ...+.+.+|++++++++|||||++++++ .+++.
T Consensus 10 ~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~-----~~~~~ 84 (444)
T 3soa_A 10 TEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSI-----SEEGH 84 (444)
T ss_dssp HHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEE-----ECSSE
T ss_pred cCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEE-----EECCE
Confidence 4578999999999999999999999999999999976542 3346789999999999999999999985 44678
Q ss_pred eeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeec---CC
Q 003368 720 KALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLD---NN 796 (825)
Q Consensus 720 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~---~~ 796 (825)
.++||||+++|+|.+++... ..+++.++..++.|++.||+|||+. +|+||||||+|||++ .+
T Consensus 85 ~~lv~E~~~gg~L~~~i~~~------------~~~~e~~~~~i~~qil~aL~~lH~~---givHrDlKp~NIll~~~~~~ 149 (444)
T 3soa_A 85 HYLIFDLVTGGELFEDIVAR------------EYYSEADASHCIQQILEAVLHCHQM---GVVHRNLKPENLLLASKLKG 149 (444)
T ss_dssp EEEEECCCBCCBHHHHHHHC------------SCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSSTTEEESBSSTT
T ss_pred EEEEEEeCCCCCHHHHHHHc------------CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEeccCCC
Confidence 89999999999999988432 4689999999999999999999986 999999999999998 46
Q ss_pred CcEEEcccCcccccccCCCCCccccccC
Q 003368 797 LTAHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 797 ~~~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
+.+||+|||+|+............+||+
T Consensus 150 ~~vkL~DFG~a~~~~~~~~~~~~~~gt~ 177 (444)
T 3soa_A 150 AAVKLADFGLAIEVEGEQQAWFGFAGTP 177 (444)
T ss_dssp CCEEECCCSSCBCCCTTCCBCCCSCSCG
T ss_pred CcEEEccCceeEEecCCCceeecccCCc
Confidence 7899999999998766544444556664
No 126
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=99.92 E-value=8.4e-25 Score=233.66 Aligned_cols=166 Identities=37% Similarity=0.572 Sum_probs=144.0
Q ss_pred hcccccHHHHHhhccccccc------ceeccCCeeEEEEEEEcCCCeEEEEEEeeccc----chhHHHHHHHHHHhhcCC
Q 003368 629 ALRKVSYESLLKATDGFSST------HLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL----QGASKSFAAECRALRNIR 698 (825)
Q Consensus 629 ~~~~~~~~~~~~~~~~f~~~------~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~----~~~~~~~~~E~~~l~~l~ 698 (825)
....+++.++.+++++|+.. +.||+|+||.||+|+. +++.||||++.... ....+.+.+|++++++++
T Consensus 11 ~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~ 88 (307)
T 2nru_A 11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV--NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQ 88 (307)
T ss_dssp CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES--SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCC
T ss_pred CCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE--CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcC
Confidence 35678999999999999887 8999999999999996 67899999986532 234567999999999999
Q ss_pred CCCceeEeecccccccCCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCC
Q 003368 699 HRNLVRVITSCSSIDFQGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQ 778 (825)
Q Consensus 699 H~niv~l~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~ 778 (825)
||||+++++++. ..+..++||||+++|+|.+++... .....++|..+..++.|+++||+|||+.
T Consensus 89 h~~i~~~~~~~~-----~~~~~~lv~e~~~~~~L~~~l~~~---------~~~~~~~~~~~~~i~~~i~~~l~~lH~~-- 152 (307)
T 2nru_A 89 HENLVELLGFSS-----DGDDLCLVYVYMPNGSLLDRLSCL---------DGTPPLSWHMRCKIAQGAANGINFLHEN-- 152 (307)
T ss_dssp CTTBCCEEEEEC-----SSSSCEEEEECCTTCBHHHHHHTG---------GGCCCCCHHHHHHHHHHHHHHHHHHHHT--
T ss_pred CCCeEEEEEEEe-----cCCceEEEEEecCCCcHHHHHHhc---------cCCCCCCHHHHHHHHHHHHHHHHHHhcC--
Confidence 999999999853 356789999999999999998532 2234689999999999999999999985
Q ss_pred CCeeecCCCCCCeeecCCCcEEEcccCcccccccC
Q 003368 779 EPTIHCDLKPSNILLDNNLTAHVGDFGLARLRQEV 813 (825)
Q Consensus 779 ~~ivHrdlk~~NILl~~~~~~ki~DFGla~~~~~~ 813 (825)
+|+||||||+||++++++.+||+|||+++.....
T Consensus 153 -~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~ 186 (307)
T 2nru_A 153 -HHIHRDIKSANILLDEAFTAKISDFGLARASEKF 186 (307)
T ss_dssp -TEECSCCCGGGEEECTTCCEEECCCTTCEECCSC
T ss_pred -CeecCCCCHHHEEEcCCCcEEEeecccccccccc
Confidence 9999999999999999999999999999876543
No 127
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=99.92 E-value=4e-25 Score=234.39 Aligned_cols=161 Identities=25% Similarity=0.389 Sum_probs=135.3
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc--hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCee
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ--GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFK 720 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~--~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~ 720 (825)
++|+..+.||+|+||+||+|+...+|+.||||++..... ...+.+.+|++++++++||||+++++++. .++..
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~~~~ 76 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLH-----SDKKL 76 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEE-----ETTEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEE-----eCCEE
Confidence 468889999999999999999999999999999975432 33467889999999999999999999854 46788
Q ss_pred eEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcEE
Q 003368 721 ALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTAH 800 (825)
Q Consensus 721 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~k 800 (825)
++||||+++ ++.+++.. ....+++.++..++.|+++||+|||+. +|+||||||+||+++.++.+|
T Consensus 77 ~lv~e~~~~-~l~~~~~~-----------~~~~l~~~~~~~~~~ql~~~l~~lH~~---~ivH~dikp~Nil~~~~~~~k 141 (292)
T 3o0g_A 77 TLVFEFCDQ-DLKKYFDS-----------CNGDLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELK 141 (292)
T ss_dssp EEEEECCSE-EHHHHHHH-----------TTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEE
T ss_pred EEEEecCCC-CHHHHHHh-----------CCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEE
Confidence 999999986 56555531 124689999999999999999999996 999999999999999999999
Q ss_pred EcccCcccccccCCCCCcccccc
Q 003368 801 VGDFGLARLRQEVPNNQSSSVGD 823 (825)
Q Consensus 801 i~DFGla~~~~~~~~~~~~~~gt 823 (825)
|+|||+|+............+||
T Consensus 142 l~Dfg~~~~~~~~~~~~~~~~~t 164 (292)
T 3o0g_A 142 LANFGLARAFGIPVRCYSAEVVT 164 (292)
T ss_dssp ECCCTTCEECCSCCSCCCSCCSC
T ss_pred EeecccceecCCccccccCCccc
Confidence 99999999876544334444554
No 128
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=99.92 E-value=6.3e-25 Score=236.59 Aligned_cols=161 Identities=24% Similarity=0.317 Sum_probs=137.3
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccch------hHHHHHHHHHHhhcCCCCCceeEeecccccccCC
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQG------ASKSFAAECRALRNIRHRNLVRVITSCSSIDFQG 716 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~------~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~ 716 (825)
+.|...+.||+|+||.||+|+...+|+.||||++...... ..+.+.+|++++++++|||||++++++. .
T Consensus 11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-----~ 85 (326)
T 2y0a_A 11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYE-----N 85 (326)
T ss_dssp HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----C
T ss_pred cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEE-----e
Confidence 4588899999999999999999889999999999764321 3567999999999999999999999853 4
Q ss_pred CCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCC
Q 003368 717 NDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNN 796 (825)
Q Consensus 717 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~ 796 (825)
....++||||+++|+|.+++... ..+++.++..++.|++.||+|||+. +|+||||||+||+++.+
T Consensus 86 ~~~~~lv~e~~~~~~L~~~l~~~------------~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~ 150 (326)
T 2y0a_A 86 KTDVILILELVAGGELFDFLAEK------------ESLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDR 150 (326)
T ss_dssp SSEEEEEEECCCSCBHHHHHTTS------------SCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCS
T ss_pred CCEEEEEEEcCCCCCHHHHHHhc------------CCcCHHHHHHHHHHHHHHHHHHHHC---CeEcCCCCHHHEEEecC
Confidence 67789999999999999998532 3588999999999999999999985 99999999999999988
Q ss_pred C----cEEEcccCcccccccCCCCCccccccC
Q 003368 797 L----TAHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 797 ~----~~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
+ .+||+|||+|+...... .....+||+
T Consensus 151 ~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~gt~ 181 (326)
T 2y0a_A 151 NVPKPRIKIIDFGLAHKIDFGN-EFKNIFGTP 181 (326)
T ss_dssp SSSSCCEEECCCTTCEECCTTS-CCCCCCSCT
T ss_pred CCCCCCEEEEECCCCeECCCCC-ccccccCCc
Confidence 7 89999999999875432 223345554
No 129
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=99.92 E-value=4.2e-25 Score=237.33 Aligned_cols=162 Identities=20% Similarity=0.266 Sum_probs=137.9
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCeee
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFKA 721 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~~ 721 (825)
.++|...+.||+|+||.||+|+...+|+.||+|.+.... ...+.+.+|+++++.++||||+++++++. +.+..+
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~-----~~~~~~ 77 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFE-----SMEELV 77 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEE-----ETTEEE
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc-ccHHHHHHHHHHHHhCCCCCCCeEeEEEe-----cCCEEE
Confidence 467889999999999999999999999999999987543 34567889999999999999999999853 467889
Q ss_pred EEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecC--CCcE
Q 003368 722 LVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDN--NLTA 799 (825)
Q Consensus 722 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~--~~~~ 799 (825)
+||||+++|+|.+++... ...+++.++..++.|+++||+|||+. +|+||||||+|||++. ++.+
T Consensus 78 lv~e~~~g~~L~~~l~~~-----------~~~~~~~~~~~i~~qi~~al~~lH~~---givH~Dlkp~NIl~~~~~~~~~ 143 (321)
T 1tki_A 78 MIFEFISGLDIFERINTS-----------AFELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTI 143 (321)
T ss_dssp EEECCCCCCBHHHHHTSS-----------SCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCE
T ss_pred EEEEeCCCCCHHHHHHhc-----------CCCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEccCCCCCE
Confidence 999999999999998532 23588999999999999999999986 9999999999999987 7899
Q ss_pred EEcccCcccccccCCCCCccccccC
Q 003368 800 HVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 800 ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
||+|||+|+...... .....+||+
T Consensus 144 kl~Dfg~a~~~~~~~-~~~~~~gt~ 167 (321)
T 1tki_A 144 KIIEFGQARQLKPGD-NFRLLFTAP 167 (321)
T ss_dssp EECCCTTCEECCTTC-EEEEEESCG
T ss_pred EEEECCCCeECCCCC-ccccccCCh
Confidence 999999999875432 223344554
No 130
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=99.92 E-value=4e-25 Score=238.07 Aligned_cols=152 Identities=28% Similarity=0.491 Sum_probs=131.4
Q ss_pred ccccccceeccCCeeEEEEEEEcCCC---eEEEEEEeecccc-hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCC
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDG---TIVAIKVLNLQLQ-GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGND 718 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g---~~vAvK~~~~~~~-~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~ 718 (825)
++|...+.||+|+||.||+|++..+| ..||||+++.... ...+.|.+|++++++++||||++++++|. +++
T Consensus 49 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~~ 123 (325)
T 3kul_A 49 SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVT-----RGR 123 (325)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-----GGG
T ss_pred hHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEE-----eCC
Confidence 46888899999999999999997544 4599999976533 34567999999999999999999999863 356
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..++||||+++|+|.+++... ...+++.++..|+.|+++||+|||+. +|+||||||+|||++.++.
T Consensus 124 ~~~lv~e~~~~~~L~~~l~~~-----------~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~ 189 (325)
T 3kul_A 124 LAMIVTEYMENGSLDTFLRTH-----------DGQFTIMQLVGMLRGVGAGMRYLSDL---GYVHRDLAARNVLVDSNLV 189 (325)
T ss_dssp CCEEEEECCTTCBHHHHHHTT-----------TTCSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCC
T ss_pred ccEEEeeCCCCCcHHHHHHhc-----------ccCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEECCCCC
Confidence 789999999999999998532 23689999999999999999999986 8999999999999999999
Q ss_pred EEEcccCcccccccC
Q 003368 799 AHVGDFGLARLRQEV 813 (825)
Q Consensus 799 ~ki~DFGla~~~~~~ 813 (825)
+||+|||+|+.....
T Consensus 190 ~kl~Dfg~a~~~~~~ 204 (325)
T 3kul_A 190 CKVSDFGLSRVLEDD 204 (325)
T ss_dssp EEECCCSSCEECC--
T ss_pred EEECCCCcccccccC
Confidence 999999999987554
No 131
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=99.92 E-value=3e-25 Score=253.27 Aligned_cols=164 Identities=24% Similarity=0.325 Sum_probs=140.3
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc---chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL---QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGND 718 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~---~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~ 718 (825)
.++|...++||+|+||.||+|+.+.+|+.||||++.... ....+.+.+|++++++++|||||++++++ ++.+
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~-----~~~~ 257 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAY-----ETKD 257 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEE-----ECSS
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEE-----eeCC
Confidence 467999999999999999999998899999999997542 23356788999999999999999999984 4567
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..|+||||+++|+|.+++... ....+++.++..|+.||+.||+|||+. +||||||||+|||++.++.
T Consensus 258 ~l~lVmEy~~gg~L~~~l~~~----------~~~~l~e~~~~~i~~qIl~aL~yLH~~---gIvHrDLKPeNILld~~g~ 324 (576)
T 2acx_A 258 ALCLVLTLMNGGDLKFHIYHM----------GQAGFPEARAVFYAAEICCGLEDLHRE---RIVYRDLKPENILLDDHGH 324 (576)
T ss_dssp EEEEEECCCCSCBHHHHHHSS----------SSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSC
T ss_pred EEEEEEEcCCCCcHHHHHHhc----------CCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCchheEEEeCCCC
Confidence 899999999999999998532 123489999999999999999999986 9999999999999999999
Q ss_pred EEEcccCcccccccCCCCCccccccC
Q 003368 799 AHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 799 ~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
+||+|||+|+...... ...+.+||+
T Consensus 325 vKL~DFGla~~~~~~~-~~~~~~GT~ 349 (576)
T 2acx_A 325 IRISDLGLAVHVPEGQ-TIKGRVGTV 349 (576)
T ss_dssp EEECCCTTCEECCTTC-CEECCCSCG
T ss_pred eEEEecccceecccCc-cccccCCCc
Confidence 9999999999876543 234456765
No 132
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=99.92 E-value=2.4e-25 Score=244.22 Aligned_cols=152 Identities=29% Similarity=0.517 Sum_probs=125.5
Q ss_pred ccccccceeccCCeeEEEEEEEc---CCCeEEEEEEeecccc-hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCC
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFD---RDGTIVAIKVLNLQLQ-GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGND 718 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~---~~g~~vAvK~~~~~~~-~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~ 718 (825)
++|...+.||+|+||.||+|++. .++..||||+++.... ...+.|.+|++++++++|||||+++++|. ..+
T Consensus 45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~-----~~~ 119 (373)
T 2qol_A 45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVT-----KSK 119 (373)
T ss_dssp GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-----SSS
T ss_pred hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-----eCC
Confidence 56889999999999999999985 4677899999976533 34568999999999999999999999964 356
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..++||||+++|+|.+++... ...++|.++..|+.|+++||+|||+. +|+||||||+|||++.++.
T Consensus 120 ~~~lv~e~~~~~sL~~~l~~~-----------~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~ 185 (373)
T 2qol_A 120 PVMIVTEYMENGSLDSFLRKH-----------DAQFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLV 185 (373)
T ss_dssp SCEEEEECCTTCBHHHHHHTT-----------TTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCC
T ss_pred ceEEEEeCCCCCcHHHHHHhC-----------CCCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEEcCCCC
Confidence 789999999999999999532 23689999999999999999999985 8999999999999999999
Q ss_pred EEEcccCcccccccC
Q 003368 799 AHVGDFGLARLRQEV 813 (825)
Q Consensus 799 ~ki~DFGla~~~~~~ 813 (825)
+||+|||+|+.....
T Consensus 186 ~kl~Dfg~a~~~~~~ 200 (373)
T 2qol_A 186 CKVSDFGLGRVLEDD 200 (373)
T ss_dssp EEECCC---------
T ss_pred EEECcCccccccccC
Confidence 999999999987654
No 133
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=99.92 E-value=2.3e-25 Score=236.62 Aligned_cols=154 Identities=28% Similarity=0.504 Sum_probs=131.8
Q ss_pred ccccccceeccCCeeEEEEEE----EcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCC
Q 003368 643 DGFSSTHLIGIGSFGSVYKGT----FDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGND 718 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~----~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~ 718 (825)
++|+..+.||+|+||.||+|+ ...+|+.||||++........+.|.+|++++++++||||++++++|.. .+..
T Consensus 10 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~---~~~~ 86 (295)
T 3ugc_A 10 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYS---AGRR 86 (295)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECH---HHHT
T ss_pred HHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec---CCCC
Confidence 568889999999999999998 456889999999987666666789999999999999999999998743 1234
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..++||||+++|+|.+++... ...+++.++..++.|++.||+|||+. +|+||||||+||+++.++.
T Consensus 87 ~~~lv~e~~~~~~L~~~l~~~-----------~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~ 152 (295)
T 3ugc_A 87 NLKLIMEYLPYGSLRDYLQKH-----------KERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENR 152 (295)
T ss_dssp SCEEEEECCTTCBHHHHHHHC-----------GGGCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTE
T ss_pred ceEEEEEeCCCCCHHHHHHhc-----------ccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHhhEEEcCCCe
Confidence 579999999999999998532 23589999999999999999999985 9999999999999999999
Q ss_pred EEEcccCcccccccC
Q 003368 799 AHVGDFGLARLRQEV 813 (825)
Q Consensus 799 ~ki~DFGla~~~~~~ 813 (825)
+||+|||+|+.....
T Consensus 153 ~kl~Dfg~~~~~~~~ 167 (295)
T 3ugc_A 153 VKIGDFGLTKVLPQD 167 (295)
T ss_dssp EEECCCCSCC-----
T ss_pred EEEccCcccccccCC
Confidence 999999999987543
No 134
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=99.92 E-value=5e-25 Score=241.62 Aligned_cols=160 Identities=26% Similarity=0.376 Sum_probs=131.3
Q ss_pred ccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCeeeEEE
Q 003368 645 FSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFKALVY 724 (825)
Q Consensus 645 f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~~lv~ 724 (825)
+...++||+|+||.||+|+...+|+.||||+++.......+.+.+|++++++++|||||+++++|. ..+..++||
T Consensus 91 ~~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~-----~~~~~~lv~ 165 (373)
T 2x4f_A 91 VSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFE-----SKNDIVLVM 165 (373)
T ss_dssp EEEEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSSEEEEEE
T ss_pred eecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEE-----ECCEEEEEE
Confidence 344678999999999999998899999999998765556678999999999999999999999854 356789999
Q ss_pred EccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeee--cCCCcEEEc
Q 003368 725 QYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILL--DNNLTAHVG 802 (825)
Q Consensus 725 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl--~~~~~~ki~ 802 (825)
||+++|+|.+++.. ....+++.++..++.|+++||+|||+. +|+||||||+|||+ +.++.+||+
T Consensus 166 E~~~~~~L~~~l~~-----------~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~ 231 (373)
T 2x4f_A 166 EYVDGGELFDRIID-----------ESYNLTELDTILFMKQICEGIRHMHQM---YILHLDLKPENILCVNRDAKQIKII 231 (373)
T ss_dssp ECCTTCEEHHHHHH-----------TGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEETTTTEEEEC
T ss_pred eCCCCCcHHHHHHh-----------cCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEecCCCCcEEEE
Confidence 99999999998842 224689999999999999999999986 89999999999999 667899999
Q ss_pred ccCcccccccCCCCCccccccC
Q 003368 803 DFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 803 DFGla~~~~~~~~~~~~~~gt~ 824 (825)
|||+|+...... .....+||+
T Consensus 232 DFG~a~~~~~~~-~~~~~~gt~ 252 (373)
T 2x4f_A 232 DFGLARRYKPRE-KLKVNFGTP 252 (373)
T ss_dssp CCSSCEECCTTC-BCCCCCSSC
T ss_pred eCCCceecCCcc-ccccccCCC
Confidence 999999875542 223345654
No 135
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=99.92 E-value=3.3e-25 Score=250.68 Aligned_cols=155 Identities=27% Similarity=0.387 Sum_probs=126.3
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc--chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCe
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL--QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDF 719 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~ 719 (825)
.++|...+.||+|+||+||+|++..+|+.||||++.... ....+.+.+|++++++++|||||+++++|....++....
T Consensus 52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 131 (458)
T 3rp9_A 52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE 131 (458)
T ss_dssp CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence 467999999999999999999998899999999996543 234567899999999999999999999986544455567
Q ss_pred eeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcE
Q 003368 720 KALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTA 799 (825)
Q Consensus 720 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ 799 (825)
.|+||||+ +|+|.+++... ..+++..+..|+.||++||+|||+. +||||||||+|||++.++.+
T Consensus 132 ~~lv~e~~-~~~L~~~~~~~------------~~l~~~~~~~~~~qi~~aL~~LH~~---~iiHrDlKp~NILl~~~~~~ 195 (458)
T 3rp9_A 132 LYVVLEIA-DSDFKKLFRTP------------VYLTELHIKTLLYNLLVGVKYVHSA---GILHRDLKPANCLVNQDCSV 195 (458)
T ss_dssp EEEEECCC-SEEHHHHHHSS------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCE
T ss_pred EEEEEecc-ccchhhhcccC------------CCCCHHHHHHHHHHHHHHHHHHHhC---CcCCCCCChhhEEECCCCCE
Confidence 89999998 57899888532 3689999999999999999999986 99999999999999999999
Q ss_pred EEcccCccccccc
Q 003368 800 HVGDFGLARLRQE 812 (825)
Q Consensus 800 ki~DFGla~~~~~ 812 (825)
||+|||+|+....
T Consensus 196 kl~DFGla~~~~~ 208 (458)
T 3rp9_A 196 KVCDFGLARTVDY 208 (458)
T ss_dssp EECCCTTCBCTTS
T ss_pred eecccccchhccC
Confidence 9999999998754
No 136
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=99.92 E-value=4.2e-25 Score=238.24 Aligned_cols=161 Identities=27% Similarity=0.422 Sum_probs=137.2
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc---chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL---QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGND 718 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~---~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~ 718 (825)
.++|...+.||+|+||+||+|++..+|+.||||++.... ....+.+.+|+++++.++||||+++++++. ..+
T Consensus 8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~-----~~~ 82 (336)
T 3h4j_B 8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVIT-----TPT 82 (336)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSS
T ss_pred cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEE-----eCC
Confidence 357889999999999999999999999999999997542 122457899999999999999999999854 356
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..++||||+ +|+|.+++.. ...+++.++..++.|++.||+|||+. +|+||||||+|||+++++.
T Consensus 83 ~~~lv~E~~-~g~l~~~l~~------------~~~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~ 146 (336)
T 3h4j_B 83 DIVMVIEYA-GGELFDYIVE------------KKRMTEDEGRRFFQQIICAIEYCHRH---KIVHRDLKPENLLLDDNLN 146 (336)
T ss_dssp EEEEEECCC-CEEHHHHHHH------------HCSCCHHHHHHHHHHHHHHHHHHHHH---TCCCCCCSTTTEEECTTCC
T ss_pred EEEEEEECC-CCcHHHHHHH------------cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCchhhEEEcCCCC
Confidence 789999999 7899988842 24689999999999999999999996 8999999999999999999
Q ss_pred EEEcccCcccccccCCCCCccccccC
Q 003368 799 AHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 799 ~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
+||+|||+|+...... ...+.+||+
T Consensus 147 ~kl~DFG~s~~~~~~~-~~~~~~gt~ 171 (336)
T 3h4j_B 147 VKIADFGLSNIMTDGN-FLKTSCGSP 171 (336)
T ss_dssp EEECCSSCTBTTTTSB-TTCCCTTST
T ss_pred EEEEEeccceeccCCc-ccccccCCc
Confidence 9999999999875542 234445654
No 137
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=99.92 E-value=7.8e-25 Score=240.80 Aligned_cols=163 Identities=18% Similarity=0.303 Sum_probs=138.9
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCeee
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFKA 721 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~~ 721 (825)
.+.|+..+.||+|+||.||+|+...+|+.||+|++..........+.+|++++++++|||||++++++ .+....+
T Consensus 50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~-----~~~~~~~ 124 (387)
T 1kob_A 50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAF-----EDKYEMV 124 (387)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEE-----ECSSEEE
T ss_pred ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEE-----EeCCEEE
Confidence 35789999999999999999999889999999999876555567899999999999999999999985 3467889
Q ss_pred EEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecC--CCcE
Q 003368 722 LVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDN--NLTA 799 (825)
Q Consensus 722 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~--~~~~ 799 (825)
+||||+++|+|.+++... ...+++.++..++.|++.||+|||+. +|+||||||+|||++. ++.+
T Consensus 125 lv~E~~~gg~L~~~l~~~-----------~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~v 190 (387)
T 1kob_A 125 LILEFLSGGELFDRIAAE-----------DYKMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSV 190 (387)
T ss_dssp EEEECCCCCBHHHHTTCT-----------TCCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCE
T ss_pred EEEEcCCCCcHHHHHHhh-----------cCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccchHHeEEecCCCCce
Confidence 999999999999998532 23589999999999999999999986 9999999999999974 4789
Q ss_pred EEcccCcccccccCCCCCccccccC
Q 003368 800 HVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 800 ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
||+|||+|+...... ......||+
T Consensus 191 kL~DFG~a~~~~~~~-~~~~~~gt~ 214 (387)
T 1kob_A 191 KIIDFGLATKLNPDE-IVKVTTATA 214 (387)
T ss_dssp EECCCTTCEECCTTS-CEEEECSSG
T ss_pred EEEecccceecCCCc-ceeeeccCC
Confidence 999999999875432 223335553
No 138
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=99.92 E-value=7.7e-25 Score=240.07 Aligned_cols=164 Identities=23% Similarity=0.435 Sum_probs=134.0
Q ss_pred cccccccceeccCCeeEEEEEEEc-------CCCeEEEEEEeecccc-hhHHHHHHHHHHhhcC-CCCCceeEeeccccc
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFD-------RDGTIVAIKVLNLQLQ-GASKSFAAECRALRNI-RHRNLVRVITSCSSI 712 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~-------~~g~~vAvK~~~~~~~-~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~ 712 (825)
.++|...+.||+|+||.||+|++. .++..||||+++.... ...+.+.+|+++++++ +|||||+++++|.
T Consensus 80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~-- 157 (370)
T 2psq_A 80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACT-- 157 (370)
T ss_dssp GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEEC--
T ss_pred HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEc--
Confidence 467889999999999999999874 3567899999976543 3456799999999999 8999999999864
Q ss_pred ccCCCCeeeEEEEccCCCChhhhccCCCCCCCcc----cchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCC
Q 003368 713 DFQGNDFKALVYQYMPNGSLENWLHPDAIPQTDE----ENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKP 788 (825)
Q Consensus 713 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~----~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~ 788 (825)
..+..|+||||+++|+|.+++.......... .......++|.++..++.|+++||+|||+. +|+||||||
T Consensus 158 ---~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp 231 (370)
T 2psq_A 158 ---QDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAA 231 (370)
T ss_dssp ---SSSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCG
T ss_pred ---cCCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---Ceeccccch
Confidence 3567899999999999999996532110000 001124589999999999999999999986 999999999
Q ss_pred CCeeecCCCcEEEcccCcccccccC
Q 003368 789 SNILLDNNLTAHVGDFGLARLRQEV 813 (825)
Q Consensus 789 ~NILl~~~~~~ki~DFGla~~~~~~ 813 (825)
+|||++.++.+||+|||+|+.....
T Consensus 232 ~NIll~~~~~~kl~DFG~a~~~~~~ 256 (370)
T 2psq_A 232 RNVLVTENNVMKIADFGLARDINNI 256 (370)
T ss_dssp GGEEECTTCCEEECCCSSCEETTCC
T ss_pred hhEEECCCCCEEEccccCCcccCcc
Confidence 9999999999999999999976544
No 139
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=99.92 E-value=6.8e-25 Score=258.24 Aligned_cols=165 Identities=21% Similarity=0.288 Sum_probs=142.2
Q ss_pred hcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc---chhHHHHHHHHHHhhcC-CCCCceeEeecccccccCC
Q 003368 641 ATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL---QGASKSFAAECRALRNI-RHRNLVRVITSCSSIDFQG 716 (825)
Q Consensus 641 ~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~---~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~ 716 (825)
..++|+..++||+|+||+||+|+.+.+++.||||+++... ....+.+..|.+++..+ +||+|++++++ +++
T Consensus 339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~-----~~~ 413 (674)
T 3pfq_A 339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSC-----FQT 413 (674)
T ss_dssp -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEE-----CBC
T ss_pred cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEE-----EEe
Confidence 3567999999999999999999999999999999997542 23456788999999987 69999999988 556
Q ss_pred CCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCC
Q 003368 717 NDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNN 796 (825)
Q Consensus 717 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~ 796 (825)
.+..|+||||+++|+|.+++.. ...+++.++..|+.||+.||+|||+. +||||||||+|||++.+
T Consensus 414 ~~~~~lV~E~~~gg~L~~~l~~------------~~~~~~~~~~~~~~qi~~aL~~LH~~---gIiHrDLKp~NILl~~~ 478 (674)
T 3pfq_A 414 MDRLYFVMEYVNGGDLMYHIQQ------------VGRFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSE 478 (674)
T ss_dssp SSEEEEEEECCCSCBHHHHHHH------------HSSCCHHHHHHHHHHHHHHHHHHHHT---SEECCCCCSTTEEECSS
T ss_pred CCEEEEEEeCcCCCcHHHHHHh------------cCCCCHHHHHHHHHHHHHHHHHHHhC---CeEeccCChhhEEEcCC
Confidence 7789999999999999999842 24689999999999999999999986 99999999999999999
Q ss_pred CcEEEcccCcccccccCCCCCccccccCC
Q 003368 797 LTAHVGDFGLARLRQEVPNNQSSSVGDLE 825 (825)
Q Consensus 797 ~~~ki~DFGla~~~~~~~~~~~~~~gt~~ 825 (825)
+.+||+|||+|+..........+.+||++
T Consensus 479 g~ikL~DFGla~~~~~~~~~~~~~~GT~~ 507 (674)
T 3pfq_A 479 GHIKIADFGMCKENIWDGVTTKTFCGTPD 507 (674)
T ss_dssp SCEEECCCTTCEECCCTTCCBCCCCSCSS
T ss_pred CcEEEeecceeeccccCCcccccccCCCc
Confidence 99999999999976554445566778863
No 140
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=99.92 E-value=8.1e-25 Score=239.07 Aligned_cols=162 Identities=23% Similarity=0.371 Sum_probs=137.3
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc--hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCe
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ--GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDF 719 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~--~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~ 719 (825)
.++|...+.||+|+||.||+|+.+.+|+.||||++..... ...+.+.+|++++++++|||||++++++ .+++.
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~-----~~~~~ 102 (362)
T 2bdw_A 28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSI-----QEESF 102 (362)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-----ECSSE
T ss_pred ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEE-----EeCCE
Confidence 3568899999999999999999988999999999976532 3346789999999999999999999985 34678
Q ss_pred eeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCC---
Q 003368 720 KALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNN--- 796 (825)
Q Consensus 720 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~--- 796 (825)
.++||||+++|+|.+++... ..+++.++..++.|++.||+|||+. +|+||||||+|||++.+
T Consensus 103 ~~lv~e~~~gg~L~~~l~~~------------~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~ 167 (362)
T 2bdw_A 103 HYLVFDLVTGGELFEDIVAR------------EFYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKG 167 (362)
T ss_dssp EEEEECCCCSCBHHHHHTTC------------SCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEESCSSTT
T ss_pred EEEEEecCCCCCHHHHHHHc------------CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCC
Confidence 89999999999999998532 3588999999999999999999986 99999999999999865
Q ss_pred CcEEEcccCcccccccCCCCCccccccC
Q 003368 797 LTAHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 797 ~~~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
+.+||+|||+|+...+.. .....+||+
T Consensus 168 ~~~kl~DfG~a~~~~~~~-~~~~~~gt~ 194 (362)
T 2bdw_A 168 AAVKLADFGLAIEVNDSE-AWHGFAGTP 194 (362)
T ss_dssp CCEEECCCTTCBCCTTCC-SCCCSCSCT
T ss_pred CCEEEeecCcceEecCCc-ccccCCCCc
Confidence 459999999999876432 233445664
No 141
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=99.92 E-value=9e-25 Score=234.80 Aligned_cols=165 Identities=24% Similarity=0.378 Sum_probs=137.7
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc-chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCeee
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL-QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFKA 721 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~~ 721 (825)
+.|...+.||+|+||+||+|+...+|+.||||++.... ....+.+.+|++++++++||||+++++++.. ......+
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~---~~~~~~~ 85 (319)
T 4euu_A 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEE---TTTRHKV 85 (319)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEEC---TTTCCEE
T ss_pred CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeec---CCCceEE
Confidence 46888999999999999999998899999999997543 2345778899999999999999999998643 2234679
Q ss_pred EEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeee----cCCC
Q 003368 722 LVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILL----DNNL 797 (825)
Q Consensus 722 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl----~~~~ 797 (825)
+||||+++|+|.+++... .....+++.++..|+.|+++||+|||+. +|+||||||+||++ +.++
T Consensus 86 lv~e~~~~~~L~~~l~~~---------~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~ 153 (319)
T 4euu_A 86 LIMEFCPCGSLYTVLEEP---------SNAYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQS 153 (319)
T ss_dssp EEEECCTTCBHHHHHHSG---------GGTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEECTTSCE
T ss_pred EEEeCCCCCCHHHHHHHh---------ccccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEeccCCCCc
Confidence 999999999999999532 1223489999999999999999999986 99999999999999 7888
Q ss_pred cEEEcccCcccccccCCCCCcccccc
Q 003368 798 TAHVGDFGLARLRQEVPNNQSSSVGD 823 (825)
Q Consensus 798 ~~ki~DFGla~~~~~~~~~~~~~~gt 823 (825)
.+||+|||+|+....... ..+.+||
T Consensus 154 ~~kL~Dfg~a~~~~~~~~-~~~~~gt 178 (319)
T 4euu_A 154 VYKLTDFGAARELEDDEQ-FVSLYGT 178 (319)
T ss_dssp EEEECCCTTCEECCTTCC-BCCCCSC
T ss_pred eEEEccCCCceecCCCCc-eeecccC
Confidence 999999999998765432 2333454
No 142
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=99.92 E-value=5.7e-25 Score=236.62 Aligned_cols=155 Identities=28% Similarity=0.355 Sum_probs=130.6
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCeee
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFKA 721 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~~ 721 (825)
.++|+..+.||+|+||+||+|++ .++.||||++.... .....+.+|+.++++++|||||+++++|.... ......+
T Consensus 23 ~~~y~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~-~~~~~~~ 98 (322)
T 3soc_A 23 SMPLQLLEVKARGRFGCVWKAQL--LNEYVAVKIFPIQD-KQSWQNEYEVYSLPGMKHENILQFIGAEKRGT-SVDVDLW 98 (322)
T ss_dssp TEEEEEEEEEECSTTCEEEEEEE--TTEEEEEEEECGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEEC-SSSEEEE
T ss_pred hhhchhhheecccCceEEEEEEE--CCCEEEEEEeecCc-hHHHHHHHHHHHHhcCCCCCchhhcceeccCC-CCCceEE
Confidence 46789999999999999999998 47999999997543 23455677999999999999999999975421 1133479
Q ss_pred EEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcC-------CCCeeecCCCCCCeeec
Q 003368 722 LVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHC-------QEPTIHCDLKPSNILLD 794 (825)
Q Consensus 722 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~-------~~~ivHrdlk~~NILl~ 794 (825)
+||||+++|+|.+++.. ..++|.++..|+.|+++||+|||+.+ .++|+||||||+|||++
T Consensus 99 lv~e~~~~g~L~~~l~~-------------~~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~ 165 (322)
T 3soc_A 99 LITAFHEKGSLSDFLKA-------------NVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLK 165 (322)
T ss_dssp EEEECCTTCBHHHHHHH-------------CCBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEEC
T ss_pred EEEecCCCCCHHHHHHh-------------cCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEEC
Confidence 99999999999999842 25899999999999999999999741 23899999999999999
Q ss_pred CCCcEEEcccCcccccccC
Q 003368 795 NNLTAHVGDFGLARLRQEV 813 (825)
Q Consensus 795 ~~~~~ki~DFGla~~~~~~ 813 (825)
.++.+||+|||+|+.....
T Consensus 166 ~~~~~kL~DFg~a~~~~~~ 184 (322)
T 3soc_A 166 NNLTACIADFGLALKFEAG 184 (322)
T ss_dssp TTCCEEECCCTTCEEECTT
T ss_pred CCCeEEEccCCcccccccc
Confidence 9999999999999877554
No 143
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=99.92 E-value=7.4e-25 Score=246.77 Aligned_cols=162 Identities=28% Similarity=0.465 Sum_probs=139.3
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc---hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ---GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGND 718 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~---~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~ 718 (825)
.++|...+.||+|+||+||+|++..+|+.||||++..... ...+.+.+|+++++.++||||+++++++. ..+
T Consensus 15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~-----~~~ 89 (476)
T 2y94_A 15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVIS-----TPS 89 (476)
T ss_dssp ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSS
T ss_pred ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEE-----ECC
Confidence 3568899999999999999999988999999999975432 23467899999999999999999999853 456
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..++||||+++|+|.+++... ..+++.++..++.|++.||+|||+. +|+||||||+|||++.++.
T Consensus 90 ~~~lv~E~~~gg~L~~~l~~~------------~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDLkp~NIll~~~~~ 154 (476)
T 2y94_A 90 DIFMVMEYVSGGELFDYICKN------------GRLDEKESRRLFQQILSGVDYCHRH---MVVHRDLKPENVLLDAHMN 154 (476)
T ss_dssp EEEEEEECCSSEEHHHHTTSS------------SSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEECTTCC
T ss_pred EEEEEEeCCCCCcHHHHHHhc------------CCCCHHHHHHHHHHHHHHHHHHHHC---CCCcccccHHHEEEecCCC
Confidence 789999999999999998532 3589999999999999999999985 9999999999999999999
Q ss_pred EEEcccCcccccccCCCCCccccccC
Q 003368 799 AHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 799 ~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
+||+|||+|+...... ...+.+||+
T Consensus 155 vkL~DFG~a~~~~~~~-~~~~~~gt~ 179 (476)
T 2y94_A 155 AKIADFGLSNMMSDGE-FLRTSCGSP 179 (476)
T ss_dssp EEECCCSSCEECCTTC-CBCCCCSCS
T ss_pred eEEEeccchhhccccc-cccccCCCc
Confidence 9999999999875532 334456665
No 144
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=99.92 E-value=3.9e-25 Score=243.27 Aligned_cols=153 Identities=27% Similarity=0.469 Sum_probs=134.0
Q ss_pred hcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc-hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCe
Q 003368 641 ATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ-GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDF 719 (825)
Q Consensus 641 ~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~-~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~ 719 (825)
..++|...+.||+|+||.||+|++..+++.||||.++.... ...++|.+|++++++++|||||+++++|. .++.
T Consensus 112 ~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~-----~~~~ 186 (377)
T 3cbl_A 112 NHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCT-----QKQP 186 (377)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEEC-----SSSS
T ss_pred chHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe-----cCCC
Confidence 45678889999999999999999988999999999875532 23457889999999999999999999964 3566
Q ss_pred eeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcE
Q 003368 720 KALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTA 799 (825)
Q Consensus 720 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ 799 (825)
.++||||+++|+|.+++.. ....+++.++..++.|+|+||+|||+. +|+||||||+|||+++++.+
T Consensus 187 ~~lv~e~~~~g~L~~~l~~-----------~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nil~~~~~~~ 252 (377)
T 3cbl_A 187 IYIVMELVQGGDFLTFLRT-----------EGARLRVKTLLQMVGDAAAGMEYLESK---CCIHRDLAARNCLVTEKNVL 252 (377)
T ss_dssp CEEEEECCTTCBHHHHHHH-----------HGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCE
T ss_pred cEEEEEcCCCCCHHHHHHh-----------cCCCCCHHHHHHHHHHHHHHHHHHHHC---CcCCcccCHHHEEEcCCCcE
Confidence 8999999999999999842 234689999999999999999999986 89999999999999999999
Q ss_pred EEcccCccccccc
Q 003368 800 HVGDFGLARLRQE 812 (825)
Q Consensus 800 ki~DFGla~~~~~ 812 (825)
||+|||+|+...+
T Consensus 253 kl~DfG~s~~~~~ 265 (377)
T 3cbl_A 253 KISDFGMSREEAD 265 (377)
T ss_dssp EECCGGGCEECTT
T ss_pred EECcCCCceecCC
Confidence 9999999987543
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=5.1e-28 Score=283.52 Aligned_cols=380 Identities=15% Similarity=0.130 Sum_probs=191.5
Q ss_pred CCCCCCEEEcCCCCCCCCCChhhh-cccccceeecccc-ccccc-cCccCCCCCCCCEEEcccCcCcccCCccccccccc
Q 003368 102 YCSRLIGLYLGRNKLEGSIPSEFV-SLYNLKELAIQEN-NLTGG-IPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKEL 178 (825)
Q Consensus 102 ~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N-~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 178 (825)
.+++|++|+|++|.+++..+..+. .+++|++|+|++| .++.. ++..+.++++|++|+|++|.+++..+..+..+.
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~-- 180 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP-- 180 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC--
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh--
Confidence 455666666666666655555554 5667777777666 44322 333444666777777777766654433332211
Q ss_pred ceecCcCcCCccccCCCCCceeecCCcc--ccccCCchhhhcCCCCcEEEcccc-cCCCCCCccccCCCCccEEEeecc-
Q 003368 179 KSLGLGGTIPPSIYNLSLLANFSVPENR--LHGSLPPSLGLTLSNLQLFQISNN-FFSGSFPLAFSNASNLQSLEILGN- 254 (825)
Q Consensus 179 ~~L~L~~~~p~~i~~l~~l~~l~l~~N~--l~~~lp~~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N- 254 (825)
..++.|+.|++++|. ++......+...+++|++|+|++| .+.+ +|..+.++++|+.|++..+
T Consensus 181 -------------~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~ 246 (594)
T 2p1m_B 181 -------------DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYT 246 (594)
T ss_dssp -------------TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCC
T ss_pred -------------hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEccccccc
Confidence 112223333444443 111111222335789999999988 4443 6677788889999985543
Q ss_pred ------cccCccccCcCCCCCCcEEE-cccccCCCCCCCccccccccccCCCCCEEEcccccccccCCCCcccccCCccc
Q 003368 255 ------NFFGKLSVNFGDMKSLAYLN-VAINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALPHSIVSGSIPSEI 327 (825)
Q Consensus 255 ------~l~~~~~~~~~~l~~L~~L~-ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l 327 (825)
.+.+ ++..+.++++|+.+. +.... ...++..+..+++|+.|++++|.+++. .++..+
T Consensus 247 ~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~-------~~~l~~~~~~~~~L~~L~L~~~~l~~~--------~l~~~~ 310 (594)
T 2p1m_B 247 AEVRPDVYSG-LSVALSGCKELRCLSGFWDAV-------PAYLPAVYSVCSRLTTLNLSYATVQSY--------DLVKLL 310 (594)
T ss_dssp CCCCHHHHHH-HHHHHHTCTTCCEEECCBTCC-------GGGGGGGHHHHTTCCEEECTTCCCCHH--------HHHHHH
T ss_pred CccchhhHHH-HHHHHhcCCCcccccCCcccc-------hhhHHHHHHhhCCCCEEEccCCCCCHH--------HHHHHH
Confidence 3333 223556667777662 22110 112233334566777777777765431 122224
Q ss_pred cCCCCcCEEEcccCcccc-cCCccccCCCCCCEEEcc---------ccccccccCcccc-CCCCCcEEEcccCccccccC
Q 003368 328 GKLVSLYLIEMDHNQFEG-KIPEEMSRLQNLQFLNMR---------HNQLSGEIPSSFG-NLSSLVKLILGNNNLSGVIP 396 (825)
Q Consensus 328 ~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~Ls---------~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p 396 (825)
..+++|+.|++++| +.. .++.....+++|++|+++ .+.+++.....+. .+++|++|+++.|.+++..+
T Consensus 311 ~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~ 389 (594)
T 2p1m_B 311 CQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAAL 389 (594)
T ss_dssp TTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHH
T ss_pred hcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHH
Confidence 45666777777766 332 222223346667777663 2344432222222 35666666666666665443
Q ss_pred CCCC-CCCccceeecC--C----CCCccccchhhhcccccccccccCCCccccCCCccccccccccEEeecCceecccCC
Q 003368 397 SSLG-NLKQLALLHLF--Q----NDLSGAIPEEIFNISHMSDSLNFARNHLVGSIPPKIGNLKVLRMFVVSSNNLSGEIP 469 (825)
Q Consensus 397 ~~~~-~l~~L~~L~L~--~----N~l~g~ip~~~~~~~~l~~~l~l~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p 469 (825)
..+. .+++|+.|+++ + |.+++ .|.. ..++..+..+++|+.|++++ .+++..+
T Consensus 390 ~~l~~~~~~L~~L~L~~~~~~~~~~l~~-~~~~-------------------~~~~~l~~~~~~L~~L~L~~-~l~~~~~ 448 (594)
T 2p1m_B 390 ITIARNRPNMTRFRLCIIEPKAPDYLTL-EPLD-------------------IGFGAIVEHCKDLRRLSLSG-LLTDKVF 448 (594)
T ss_dssp HHHHHHCTTCCEEEEEESSTTCCCTTTC-CCTH-------------------HHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred HHHHhhCCCcceeEeecccCCCcccccC-Cchh-------------------hHHHHHHhhCCCccEEeecC-cccHHHH
Confidence 3333 35666666666 2 33331 1100 00111133445555555544 4444433
Q ss_pred ccccC-CCCCCEEEccCCcCCCCCCccc-cCCCCCCEEECCCCccccccCc-ccccc-cCceeeCCCCcc
Q 003368 470 SEIGS-CFYLQEIYMAENFFRGSIPSSL-VSLKDLREIDLSQNNLSGKIPI-SLERL-PLEYLNLSFNDL 535 (825)
Q Consensus 470 ~~~~~-l~~L~~L~l~~N~l~g~~p~~~-~~l~~L~~Ldls~N~l~~~~p~-~~~~l-~L~~l~ls~N~l 535 (825)
..++. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++..+. ....+ .|++|++++|++
T Consensus 449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 44433 5555556665555543333333 3455566666666655433222 12223 355666665554
No 146
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=99.92 E-value=8.7e-25 Score=233.90 Aligned_cols=162 Identities=27% Similarity=0.423 Sum_probs=132.6
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc--hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCe
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ--GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDF 719 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~--~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~ 719 (825)
.++|+..+.||+|+||+||+|+. .+|+.||||++..... ...+.+.+|++++++++|||||++++++ ..++.
T Consensus 20 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~-----~~~~~ 93 (311)
T 3niz_A 20 MEKYQKLEKVGEGTYGVVYKAKD-SQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVI-----HSERC 93 (311)
T ss_dssp SCEEEEEEEEEECSSCEEEEEEE-TTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEE-----CCSSC
T ss_pred HhhhHhhhhccCCCCeEEEEEEE-CCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEE-----ccCCE
Confidence 46799999999999999999998 5799999999975432 2346789999999999999999999985 34667
Q ss_pred eeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcE
Q 003368 720 KALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTA 799 (825)
Q Consensus 720 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ 799 (825)
.++||||+++ +|.+++... ...+++.++..++.|+++||+|||+. +|+||||||+|||++.++.+
T Consensus 94 ~~lv~e~~~~-~l~~~~~~~-----------~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIl~~~~~~~ 158 (311)
T 3niz_A 94 LTLVFEFMEK-DLKKVLDEN-----------KTGLQDSQIKIYLYQLLRGVAHCHQH---RILHRDLKPQNLLINSDGAL 158 (311)
T ss_dssp EEEEEECCSE-EHHHHHHTC-----------TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCE
T ss_pred EEEEEcCCCC-CHHHHHHhc-----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCchHhEEECCCCCE
Confidence 8999999985 888877432 23588999999999999999999985 99999999999999999999
Q ss_pred EEcccCcccccccCCCCCccccccC
Q 003368 800 HVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 800 ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
||+|||+|+............+||+
T Consensus 159 kl~Dfg~a~~~~~~~~~~~~~~~t~ 183 (311)
T 3niz_A 159 KLADFGLARAFGIPVRSYTHEVVTL 183 (311)
T ss_dssp EECCCTTCEETTSCCC---CCCCCC
T ss_pred EEccCcCceecCCCcccccCCcccC
Confidence 9999999998765433334445553
No 147
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=2.7e-24 Score=222.56 Aligned_cols=158 Identities=22% Similarity=0.220 Sum_probs=130.3
Q ss_pred CCceeeceeecCCCCcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCC
Q 003368 18 HFCDWEGITCSPRHRRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIP 97 (825)
Q Consensus 18 ~~C~~~g~~c~~~~~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 97 (825)
+||.|.|++|.. ..+.+|++++++. .+|..+. +.|+.|+|++|++++..+..|.++++|++|+|++|+|++..|
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 688999999963 4457899998886 5666554 689999999999998888889999999999999999998888
Q ss_pred cCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccCCcccccccc
Q 003368 98 GNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKE 177 (825)
Q Consensus 98 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 177 (825)
..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 88999999999999999999888888889999999999999999777777888999999999999888655545544444
Q ss_pred ccee
Q 003368 178 LKSL 181 (825)
Q Consensus 178 L~~L 181 (825)
|++|
T Consensus 157 L~~L 160 (251)
T 3m19_A 157 LQTL 160 (251)
T ss_dssp CCEE
T ss_pred CCEE
Confidence 4433
No 148
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=99.92 E-value=9.8e-25 Score=232.36 Aligned_cols=154 Identities=27% Similarity=0.442 Sum_probs=127.9
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhc--CCCCCceeEeecccccccCCCCe
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRN--IRHRNLVRVITSCSSIDFQGNDF 719 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~--l~H~niv~l~~~~~~~~~~~~~~ 719 (825)
.++|...+.||+|+||+||+|++ +|+.||||++... ..+.+.+|.+++.. ++||||+++++++... ......
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~-~~~~~~ 80 (301)
T 3q4u_A 7 ARDITLLECVGKGRYGEVWRGSW--QGENVAVKIFSSR---DEKSWFRETELYNTVMLRHENILGFIASDMTS-RHSSTQ 80 (301)
T ss_dssp GGGCEEEEEEEECSSEEEEEEEE--TTEEEEEEEECGG---GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEE-ETTEEE
T ss_pred cCcEEEEEeeccCCCcEEEEEEE--CCEEEEEEEeccc---cchhhHHHHHHHHHhhccCcCeeeEEEeeccc-cCCCce
Confidence 46789999999999999999998 6899999998653 33455666666665 8999999999987542 233456
Q ss_pred eeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcC-----CCCeeecCCCCCCeeec
Q 003368 720 KALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHC-----QEPTIHCDLKPSNILLD 794 (825)
Q Consensus 720 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~-----~~~ivHrdlk~~NILl~ 794 (825)
.++||||+++|+|.+++.. ..+++..+..|+.|+++||+|||+.. ..+|+||||||+|||++
T Consensus 81 ~~lv~e~~~~g~L~~~l~~-------------~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~ 147 (301)
T 3q4u_A 81 LWLITHYHEMGSLYDYLQL-------------TTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVK 147 (301)
T ss_dssp EEEEECCCTTCBHHHHHTT-------------CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEEC
T ss_pred eEEehhhccCCCHHHHHhh-------------cccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEc
Confidence 8999999999999999943 25899999999999999999999211 25999999999999999
Q ss_pred CCCcEEEcccCcccccccCC
Q 003368 795 NNLTAHVGDFGLARLRQEVP 814 (825)
Q Consensus 795 ~~~~~ki~DFGla~~~~~~~ 814 (825)
.++.+||+|||+|+......
T Consensus 148 ~~~~~kl~Dfg~a~~~~~~~ 167 (301)
T 3q4u_A 148 KNGQCCIADLGLAVMHSQST 167 (301)
T ss_dssp TTSCEEECCCTTCEEEETTT
T ss_pred CCCCEEEeeCCCeeeccccc
Confidence 99999999999998765543
No 149
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=99.92 E-value=1e-24 Score=244.42 Aligned_cols=156 Identities=28% Similarity=0.342 Sum_probs=133.9
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc--chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCe
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL--QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDF 719 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~ 719 (825)
.++|...+.||+|+||.||+|++..+|+.||||++.... ....+.+.+|++++++++|||||++++++....+.....
T Consensus 25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 104 (432)
T 3n9x_A 25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE 104 (432)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence 467999999999999999999999999999999997542 234567899999999999999999999976533333367
Q ss_pred eeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcE
Q 003368 720 KALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTA 799 (825)
Q Consensus 720 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ 799 (825)
.|+||||+. |+|.+++... ..+++..+..++.|+++||+|||+. +|+||||||+|||++.++.+
T Consensus 105 ~~lv~e~~~-~~L~~~~~~~------------~~l~~~~~~~i~~qil~aL~~LH~~---givHrDlkp~NILl~~~~~~ 168 (432)
T 3n9x_A 105 LYIVLEIAD-SDLKKLFKTP------------IFLTEEHIKTILYNLLLGENFIHES---GIIHRDLKPANCLLNQDCSV 168 (432)
T ss_dssp EEEEEECCS-EEHHHHHHSS------------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCE
T ss_pred EEEEEecCC-cCHHHHHhcc------------CCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHeEECCCCCE
Confidence 899999986 5999988532 3589999999999999999999996 89999999999999999999
Q ss_pred EEcccCcccccccC
Q 003368 800 HVGDFGLARLRQEV 813 (825)
Q Consensus 800 ki~DFGla~~~~~~ 813 (825)
||+|||+|+.....
T Consensus 169 kL~DFGla~~~~~~ 182 (432)
T 3n9x_A 169 KVCDFGLARTINSE 182 (432)
T ss_dssp EECCCTTCEEC---
T ss_pred EEccCCCccccccc
Confidence 99999999987543
No 150
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=99.92 E-value=6.3e-25 Score=240.17 Aligned_cols=174 Identities=24% Similarity=0.326 Sum_probs=140.2
Q ss_pred ccHHHHHhhcccccccceeccCCeeEEEEEE-----EcCCCeEEEEEEeecccc-hhHHHHHHHHHHhhcC-CCCCceeE
Q 003368 633 VSYESLLKATDGFSSTHLIGIGSFGSVYKGT-----FDRDGTIVAIKVLNLQLQ-GASKSFAAECRALRNI-RHRNLVRV 705 (825)
Q Consensus 633 ~~~~~~~~~~~~f~~~~~ig~G~~g~Vy~~~-----~~~~g~~vAvK~~~~~~~-~~~~~~~~E~~~l~~l-~H~niv~l 705 (825)
+...++....++|...+.||+|+||.||+|+ ...+++.||||+++.... ...+.+.+|+++++++ +|||||++
T Consensus 12 ~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~ 91 (359)
T 3vhe_A 12 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 91 (359)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeee
Confidence 4455566677889999999999999999998 445678999999976543 3356799999999999 79999999
Q ss_pred eecccccccCCCCeeeEEEEccCCCChhhhccCCCCCCCc----------------------------------------
Q 003368 706 ITSCSSIDFQGNDFKALVYQYMPNGSLENWLHPDAIPQTD---------------------------------------- 745 (825)
Q Consensus 706 ~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~---------------------------------------- 745 (825)
+++|.. .+...++||||+++|+|.++++........
T Consensus 92 ~~~~~~----~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (359)
T 3vhe_A 92 LGACTK----PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGF 167 (359)
T ss_dssp EEEECS----TTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC--------------------------------------
T ss_pred eeeeec----CCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccccccc
Confidence 998743 344589999999999999999754211000
Q ss_pred --------------ccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcEEEcccCcccccc
Q 003368 746 --------------EENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTAHVGDFGLARLRQ 811 (825)
Q Consensus 746 --------------~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ki~DFGla~~~~ 811 (825)
........+++..+..|+.|+++||+|||+. +|+||||||+||+++.++.+||+|||+|+...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~ 244 (359)
T 3vhe_A 168 VEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDIY 244 (359)
T ss_dssp ----------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCGGGSCTT
T ss_pred ccccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCcEEEEeccceeeec
Confidence 0000022389999999999999999999986 89999999999999999999999999999765
Q ss_pred cC
Q 003368 812 EV 813 (825)
Q Consensus 812 ~~ 813 (825)
..
T Consensus 245 ~~ 246 (359)
T 3vhe_A 245 KD 246 (359)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 151
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.92 E-value=7.9e-25 Score=224.79 Aligned_cols=203 Identities=15% Similarity=0.114 Sum_probs=163.3
Q ss_pred cccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCc-CCCCCCcCCCCCCCCCEEEcCC-CCCCCCCChh
Q 003368 46 GSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNS-LVGEIPGNLSYCSRLIGLYLGR-NKLEGSIPSE 123 (825)
Q Consensus 46 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~ 123 (825)
+.+|. +. ++|++|+|++|+|+++.+.+|.++++|++|+|++|+ ++.+.+..|..+++|++|+|++ |+|+++.+.+
T Consensus 24 ~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 24 QRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp SSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred cccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 35565 43 389999999999998888899999999999999997 9888888999999999999998 9999888889
Q ss_pred hhcccccceeeccccccccccCccCCCCCCCC---EEEcccC-cCcccCCcccccccccc-eecCcCcCCccccCCCCCc
Q 003368 124 FVSLYNLKELAIQENNLTGGIPHFLGNITSLE---AISLAYN-SLGGNIPSSLGQLKELK-SLGLGGTIPPSIYNLSLLA 198 (825)
Q Consensus 124 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~L~-~L~L~~~~p~~i~~l~~l~ 198 (825)
|.++++|++|++++|++++ +|. |..+++|+ +|++++| ++++..+..|.++++|+ +|
T Consensus 101 f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L----------------- 161 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTL----------------- 161 (239)
T ss_dssp EECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEE-----------------
T ss_pred hCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEE-----------------
Confidence 9999999999999999996 665 88888888 9999999 99877777788877777 77
Q ss_pred eeecCCccccccCCchhhhcCCCCcEEEccccc-CCCCCCccccCC-CCccEEEeecccccCccccCcCCCCCCcEEEcc
Q 003368 199 NFSVPENRLHGSLPPSLGLTLSNLQLFQISNNF-FSGSFPLAFSNA-SNLQSLEILGNNFFGKLSVNFGDMKSLAYLNVA 276 (825)
Q Consensus 199 ~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ls 276 (825)
++++|+++ .+|...+.. ++|+.|+|++|+ ++++.+..|..+ ++|+.|+|++|++.+..+. .+++|+.|+++
T Consensus 162 --~l~~n~l~-~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~ 234 (239)
T 2xwt_C 162 --KLYNNGFT-SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIAR 234 (239)
T ss_dssp --ECCSCCCC-EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECT
T ss_pred --EcCCCCCc-ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeecc
Confidence 66777777 677766633 788888888884 887777778888 8888888888887654433 34455555544
Q ss_pred c
Q 003368 277 I 277 (825)
Q Consensus 277 ~ 277 (825)
+
T Consensus 235 ~ 235 (239)
T 2xwt_C 235 N 235 (239)
T ss_dssp T
T ss_pred C
Confidence 3
No 152
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=99.91 E-value=2e-24 Score=227.11 Aligned_cols=161 Identities=25% Similarity=0.296 Sum_probs=139.2
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCeeeE
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFKAL 722 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~~l 722 (825)
+.|...+.||+|+||.||+|+...+++.||+|++........+.+.+|++++++++||||++++++|. +....++
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~~~~~~l 83 (277)
T 3f3z_A 9 QYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFE-----DNTDIYL 83 (277)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSSEEEE
T ss_pred hhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEe-----cCCeEEE
Confidence 56888999999999999999998899999999998766666788999999999999999999999853 4677899
Q ss_pred EEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeee---cCCCcE
Q 003368 723 VYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILL---DNNLTA 799 (825)
Q Consensus 723 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl---~~~~~~ 799 (825)
||||+++|+|.+++.. ...+++.++..++.|++.||+|||+. +|+||||||+||++ +.++.+
T Consensus 84 v~e~~~~~~L~~~~~~------------~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~ 148 (277)
T 3f3z_A 84 VMELCTGGELFERVVH------------KRVFRESDAARIMKDVLSAVAYCHKL---NVAHRDLKPENFLFLTDSPDSPL 148 (277)
T ss_dssp EEECCCSCBHHHHHHH------------HCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCE
T ss_pred EEeccCCCcHHHHHHH------------cCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEecCCCCCcE
Confidence 9999999999998842 24689999999999999999999986 89999999999999 788999
Q ss_pred EEcccCcccccccCCCCCccccccC
Q 003368 800 HVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 800 ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
||+|||+|+...... ......||+
T Consensus 149 ~l~Dfg~~~~~~~~~-~~~~~~~t~ 172 (277)
T 3f3z_A 149 KLIDFGLAARFKPGK-MMRTKVGTP 172 (277)
T ss_dssp EECCCTTCEECCTTS-CBCCCCSCT
T ss_pred EEEecccceeccCcc-chhccCCCC
Confidence 999999998765432 223344543
No 153
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=99.91 E-value=1.6e-25 Score=242.46 Aligned_cols=153 Identities=21% Similarity=0.271 Sum_probs=124.5
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc--------hhHHHHHHHHHHhhcCC---------CCCcee
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ--------GASKSFAAECRALRNIR---------HRNLVR 704 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~--------~~~~~~~~E~~~l~~l~---------H~niv~ 704 (825)
.++|...+.||+|+||+||+|++ +|+.||||++..... ...+.+.+|++++++++ |||||+
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~--~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~ 96 (336)
T 2vuw_A 19 TEKLQRCEKIGEGVFGEVFQTIA--DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIG 96 (336)
T ss_dssp HHHHHTCEEEEEETTEEEEEEEE--TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCC
T ss_pred cccchheeeecccCceEEEEEEe--CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhh
Confidence 35688899999999999999998 789999999976531 22477889999998886 777777
Q ss_pred Eeeccccc-------------------------ccCCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHH
Q 003368 705 VITSCSSI-------------------------DFQGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLER 759 (825)
Q Consensus 705 l~~~~~~~-------------------------~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~ 759 (825)
+.+.+... ++.+....++||||+++|++.+.+.. ..+++.++
T Consensus 97 l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~-------------~~~~~~~~ 163 (336)
T 2vuw_A 97 LNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT-------------KLSSLATA 163 (336)
T ss_dssp EEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT-------------TCCCHHHH
T ss_pred hcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh-------------cCCCHHHH
Confidence 76653210 01135678999999999987776632 25789999
Q ss_pred HHHHHHHHHHHHHHH-hcCCCCeeecCCCCCCeeecCCC--------------------cEEEcccCccccccc
Q 003368 760 ISIAIDVASAVDYLH-HHCQEPTIHCDLKPSNILLDNNL--------------------TAHVGDFGLARLRQE 812 (825)
Q Consensus 760 ~~i~~~va~~l~yLH-~~~~~~ivHrdlk~~NILl~~~~--------------------~~ki~DFGla~~~~~ 812 (825)
..|+.|++.||+||| +. +||||||||+|||++.++ .+||+|||+|+...+
T Consensus 164 ~~i~~qi~~aL~~lH~~~---~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~ 234 (336)
T 2vuw_A 164 KSILHQLTASLAVAEASL---RFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERD 234 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH---CCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEET
T ss_pred HHHHHHHHHHHHHHHHhC---CEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCC
Confidence 999999999999999 75 899999999999999887 899999999998654
No 154
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=5.2e-24 Score=225.04 Aligned_cols=197 Identities=25% Similarity=0.232 Sum_probs=105.5
Q ss_pred cEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcC
Q 003368 33 RVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLG 112 (825)
Q Consensus 33 ~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 112 (825)
+++.++++++++. .+|..+. +.++.|+|++|+|++..|..|..+++|++|+|++|+|++..+. ..+++|++|+|+
T Consensus 11 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls 85 (290)
T 1p9a_G 11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLS 85 (290)
T ss_dssp TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECC
T ss_pred CccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECC
Confidence 4556666666654 3444432 4566666666666655556666666666666666666644332 555666666666
Q ss_pred CCCCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcCCcccc
Q 003368 113 RNKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSIY 192 (825)
Q Consensus 113 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i~ 192 (825)
+|+|+ .+|..+..+++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|..+++|+.|
T Consensus 86 ~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L----------- 153 (290)
T 1p9a_G 86 HNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL----------- 153 (290)
T ss_dssp SSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE-----------
T ss_pred CCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE-----------
Confidence 66665 445555666666666666666665555556666666666666666654444444444444444
Q ss_pred CCCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccc
Q 003368 193 NLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNF 256 (825)
Q Consensus 193 ~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 256 (825)
++++|+++ .+|...+..+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|.+
T Consensus 154 --------~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 154 --------SLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp --------ECTTSCCS-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred --------ECCCCcCC-ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 44444444 344433334444444444444444 2333333344444444444443
No 155
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=99.91 E-value=4.6e-25 Score=236.09 Aligned_cols=151 Identities=24% Similarity=0.279 Sum_probs=126.9
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc--hhHHHHHHHHHHhhcC-CCCCceeEeecccccccCCCCe
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ--GASKSFAAECRALRNI-RHRNLVRVITSCSSIDFQGNDF 719 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~--~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~~~ 719 (825)
++|+..+.||+|+||+||+|++..+|+.||||++..... .....+..|+..+.++ +|||||+++++|. +++.
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~-----~~~~ 131 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWE-----EGGI 131 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----ETTE
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEE-----eCCE
Confidence 568999999999999999999988999999999865432 2334556666666655 8999999999964 3678
Q ss_pred eeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcE
Q 003368 720 KALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTA 799 (825)
Q Consensus 720 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ 799 (825)
.++||||+ +|+|.+++.. ....++|..+..|+.|++.||+|||+. +|+||||||+|||++.++.+
T Consensus 132 ~~lv~e~~-~~~L~~~~~~-----------~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~ 196 (311)
T 3p1a_A 132 LYLQTELC-GPSLQQHCEA-----------WGASLPEAQVWGYLRDTLLALAHLHSQ---GLVHLDVKPANIFLGPRGRC 196 (311)
T ss_dssp EEEEEECC-CCBHHHHHHH-----------HCSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECGGGCE
T ss_pred EEEEEecc-CCCHHHHHHh-----------cCCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCE
Confidence 89999999 7799988742 234689999999999999999999986 89999999999999999999
Q ss_pred EEcccCcccccccC
Q 003368 800 HVGDFGLARLRQEV 813 (825)
Q Consensus 800 ki~DFGla~~~~~~ 813 (825)
||+|||+|+.....
T Consensus 197 kl~DFG~a~~~~~~ 210 (311)
T 3p1a_A 197 KLGDFGLLVELGTA 210 (311)
T ss_dssp EECCCTTCEECC--
T ss_pred EEccceeeeecccC
Confidence 99999999876543
No 156
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=99.91 E-value=2.6e-24 Score=228.27 Aligned_cols=163 Identities=23% Similarity=0.316 Sum_probs=138.9
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc---chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL---QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGND 718 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~---~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~ 718 (825)
.++|...+.||+|+||.||+|+...+++.||+|++.... ....+.+.+|++++++++||||+++++++. ..+
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-----~~~ 88 (294)
T 2rku_A 14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFE-----DND 88 (294)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSS
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeec-----cCC
Confidence 356888999999999999999998899999999987543 234567899999999999999999999853 366
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..++||||+++++|.+++. ....+++.++..++.|+++|++|||+. +|+||||||+||+++.++.
T Consensus 89 ~~~lv~e~~~~~~L~~~~~------------~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~ 153 (294)
T 2rku_A 89 FVFVVLELCRRRSLLELHK------------RRKALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLE 153 (294)
T ss_dssp EEEEEEECCTTCBHHHHHH------------HHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCC
T ss_pred EEEEEEecCCCCCHHHHHH------------hcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEcCCCC
Confidence 7899999999999999873 224689999999999999999999986 9999999999999999999
Q ss_pred EEEcccCcccccccCCCCCccccccC
Q 003368 799 AHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 799 ~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
+||+|||+++.............||+
T Consensus 154 ~kl~dfg~~~~~~~~~~~~~~~~~~~ 179 (294)
T 2rku_A 154 VKIGDFGLATKVEYDGERKKVLCGTP 179 (294)
T ss_dssp EEECCCTTCEECCSTTCCBCCCCSCC
T ss_pred EEEEeccCceecccCccccccccCCC
Confidence 99999999998764433334444553
No 157
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=99.91 E-value=1.1e-24 Score=237.91 Aligned_cols=161 Identities=24% Similarity=0.293 Sum_probs=129.5
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCeee
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFKA 721 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~~ 721 (825)
.++|...+.||+|+||+||+|+...+|+.||||++..... ..+.+.+|+.++++++|||||++++++. .....+
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~-----~~~~~~ 92 (361)
T 3uc3_A 19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA-IDENVQREIINHRSLRHPNIVRFKEVIL-----TPTHLA 92 (361)
T ss_dssp TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT-SCHHHHHHHHHHHHCCCTTBCCEEEEEE-----CSSEEE
T ss_pred CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc-ccHHHHHHHHHHHhCCCCCCCcEEEEEe-----eCCEEE
Confidence 4679999999999999999999988999999999975432 3467889999999999999999999854 466789
Q ss_pred EEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc--E
Q 003368 722 LVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT--A 799 (825)
Q Consensus 722 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~--~ 799 (825)
+||||+++|+|.+++.. ...+++..+..++.|+++||+|||+. +|+||||||+||+++.++. +
T Consensus 93 lv~e~~~~~~L~~~l~~------------~~~~~~~~~~~i~~ql~~~L~~LH~~---~ivH~Dlkp~Nill~~~~~~~~ 157 (361)
T 3uc3_A 93 IIMEYASGGELYERICN------------AGRFSEDEARFFFQQLLSGVSYCHSM---QICHRDLKLENTLLDGSPAPRL 157 (361)
T ss_dssp EEEECCCSCBHHHHHHH------------HSSCCHHHHHHHHHHHHHHHHHHHHT---TCCSCCCCGGGEEECSSSSCCE
T ss_pred EEEEeCCCCCHHHHHHh------------cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCceE
Confidence 99999999999998842 24689999999999999999999985 8999999999999987765 9
Q ss_pred EEcccCcccccccCCCCCccccccC
Q 003368 800 HVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 800 ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
||+|||+|+...... .....+||+
T Consensus 158 kl~Dfg~a~~~~~~~-~~~~~~gt~ 181 (361)
T 3uc3_A 158 KICDFGYSKSSVLHS-QPKSTVGTP 181 (361)
T ss_dssp EECCCCCC----------------C
T ss_pred EEeecCccccccccC-CCCCCcCCC
Confidence 999999998543322 223345554
No 158
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=99.91 E-value=8.2e-25 Score=234.19 Aligned_cols=156 Identities=25% Similarity=0.386 Sum_probs=129.8
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc---hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ---GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGND 718 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~---~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~ 718 (825)
.++|+..+.||+|+||.||+|++..+|+.||||++..... ...+.+.+|++++++++||||+++++++.... ....
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~~~ 89 (311)
T 3ork_A 11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAET-PAGP 89 (311)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEE-TTEE
T ss_pred cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccC-CCCc
Confidence 3568899999999999999999989999999999976532 23457899999999999999999999865321 1122
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..++||||+++|+|.+++.. ...+++.++..++.|++.||+|||+. +|+||||||+||+++.++.
T Consensus 90 ~~~lv~e~~~g~~L~~~l~~------------~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~ 154 (311)
T 3ork_A 90 LPYIVMEYVDGVTLRDIVHT------------EGPMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNA 154 (311)
T ss_dssp EEEEEEECCCEEEHHHHHHH------------HCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEETTSC
T ss_pred ccEEEEecCCCCCHHHHHHh------------cCCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEcCCCC
Confidence 45999999999999999842 24689999999999999999999986 8999999999999999999
Q ss_pred EEEcccCcccccccC
Q 003368 799 AHVGDFGLARLRQEV 813 (825)
Q Consensus 799 ~ki~DFGla~~~~~~ 813 (825)
+||+|||+|+.....
T Consensus 155 ~kl~Dfg~a~~~~~~ 169 (311)
T 3ork_A 155 VKVMDFGIARAIADS 169 (311)
T ss_dssp EEECCCSCC------
T ss_pred EEEeeccCccccccc
Confidence 999999999876543
No 159
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=99.91 E-value=5.8e-25 Score=241.01 Aligned_cols=166 Identities=19% Similarity=0.240 Sum_probs=133.2
Q ss_pred hcccccccceeccCCeeEEEEEE-----EcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCC---CCCceeEeeccccc
Q 003368 641 ATDGFSSTHLIGIGSFGSVYKGT-----FDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIR---HRNLVRVITSCSSI 712 (825)
Q Consensus 641 ~~~~f~~~~~ig~G~~g~Vy~~~-----~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~---H~niv~l~~~~~~~ 712 (825)
..++|...+.||+|+||+||+|+ ...+++.||||++... ..+++.+|++++.+++ |+||+++++++.
T Consensus 63 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~-- 137 (365)
T 3e7e_A 63 GSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA---NPWEFYIGTQLMERLKPSMQHMFMKFYSAHL-- 137 (365)
T ss_dssp SSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC---CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEE--
T ss_pred CCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC---ChhHHHHHHHHHHHhhhhhhhhhhhhheeee--
Confidence 45678999999999999999994 5568899999998754 3456778888888777 999999999864
Q ss_pred ccCCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCee
Q 003368 713 DFQGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNIL 792 (825)
Q Consensus 713 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NIL 792 (825)
..+..++||||+++|+|.+++.... ......++|.++..|+.|+++||+|||+. +||||||||+|||
T Consensus 138 ---~~~~~~lv~e~~~~g~L~~~l~~~~-------~~~~~~l~~~~~~~i~~qi~~~L~~lH~~---~ivHrDiKp~NIl 204 (365)
T 3e7e_A 138 ---FQNGSVLVGELYSYGTLLNAINLYK-------NTPEKVMPQGLVISFAMRMLYMIEQVHDC---EIIHGDIKPDNFI 204 (365)
T ss_dssp ---CSSCEEEEECCCCSCBHHHHHHHHH-------TSTTCSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEE
T ss_pred ---cCCCcEEEEeccCCCcHHHHHHHhh-------cccccCCCHHHHHHHHHHHHHHHHHHhhC---CeecCCCCHHHEE
Confidence 3567899999999999999995310 01234699999999999999999999985 8999999999999
Q ss_pred ecC-----------CCcEEEcccCcccccccCCC--CCccccccC
Q 003368 793 LDN-----------NLTAHVGDFGLARLRQEVPN--NQSSSVGDL 824 (825)
Q Consensus 793 l~~-----------~~~~ki~DFGla~~~~~~~~--~~~~~~gt~ 824 (825)
++. ++.+||+|||+|+.+..... .....+||+
T Consensus 205 l~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~ 249 (365)
T 3e7e_A 205 LGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETS 249 (365)
T ss_dssp ECGGGTCC------CTTEEECCCTTCEEGGGSCTTEEECCSSCTT
T ss_pred ecccccCccccccccCCEEEeeCchhhhhhccCCCceeeeecCCC
Confidence 998 89999999999987653322 234445664
No 160
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=99.91 E-value=1.5e-24 Score=228.17 Aligned_cols=164 Identities=24% Similarity=0.430 Sum_probs=134.1
Q ss_pred hcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc---hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCC
Q 003368 641 ATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ---GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGN 717 (825)
Q Consensus 641 ~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~---~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 717 (825)
..++|...+.||+|+||.||+|+...+|+.||||++..... ...+.+.+|++++++++||||+++++++. +.
T Consensus 9 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~ 83 (278)
T 3cok_A 9 KIEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFE-----DS 83 (278)
T ss_dssp SGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEE-----CS
T ss_pred ccccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEc-----cC
Confidence 34679999999999999999999988999999999975422 23467899999999999999999999853 46
Q ss_pred CeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCC
Q 003368 718 DFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNL 797 (825)
Q Consensus 718 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~ 797 (825)
+..++||||+++|+|.+++... ...+++.++..++.|+++||+|||+. +|+||||||+||+++.++
T Consensus 84 ~~~~lv~e~~~~~~L~~~l~~~-----------~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nili~~~~ 149 (278)
T 3cok_A 84 NYVYLVLEMCHNGEMNRYLKNR-----------VKPFSENEARHFMHQIITGMLYLHSH---GILHRDLTLSNLLLTRNM 149 (278)
T ss_dssp SEEEEEEECCTTEEHHHHHHTC-----------SSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSSCCGGGEEECTTC
T ss_pred CeEEEEEecCCCCcHHHHHhhc-----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCC
Confidence 7789999999999999998532 24689999999999999999999986 999999999999999999
Q ss_pred cEEEcccCcccccccCCCCCcccccc
Q 003368 798 TAHVGDFGLARLRQEVPNNQSSSVGD 823 (825)
Q Consensus 798 ~~ki~DFGla~~~~~~~~~~~~~~gt 823 (825)
.+||+|||+++.............||
T Consensus 150 ~~kl~dfg~~~~~~~~~~~~~~~~~~ 175 (278)
T 3cok_A 150 NIKIADFGLATQLKMPHEKHYTLCGT 175 (278)
T ss_dssp CEEECCCTTCEECC------------
T ss_pred CEEEEeecceeeccCCCCcceeccCC
Confidence 99999999999765433323333444
No 161
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=99.91 E-value=2.6e-24 Score=232.78 Aligned_cols=163 Identities=23% Similarity=0.316 Sum_probs=139.5
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc---chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL---QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGND 718 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~---~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~ 718 (825)
.++|...+.||+|+||.||+|+...+++.||+|++.... ....+.+.+|++++++++||||+++++++. +.+
T Consensus 40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~~ 114 (335)
T 2owb_A 40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFE-----DND 114 (335)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSS
T ss_pred CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-----cCC
Confidence 356888999999999999999998899999999997543 234567899999999999999999999853 466
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..++||||+++++|.+++. ....+++.++..++.|+++||+|||+. +|+||||||+||+++.++.
T Consensus 115 ~~~lv~e~~~~~~L~~~~~------------~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~ 179 (335)
T 2owb_A 115 FVFVVLELCRRRSLLELHK------------RRKALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLE 179 (335)
T ss_dssp EEEEEECCCTTCBHHHHHH------------HHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCC
T ss_pred eEEEEEecCCCCCHHHHHh------------ccCCCCHHHHHHHHHHHHHHHHHHHHC---CCEecCCCchhEEEcCCCC
Confidence 7899999999999999873 224689999999999999999999986 9999999999999999999
Q ss_pred EEEcccCcccccccCCCCCccccccC
Q 003368 799 AHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 799 ~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
+||+|||+++.............||+
T Consensus 180 ~kl~Dfg~~~~~~~~~~~~~~~~gt~ 205 (335)
T 2owb_A 180 VKIGDFGLATKVEYDGERKKVLCGTP 205 (335)
T ss_dssp EEECCCTTCEECCSTTCCBCCCCSCC
T ss_pred EEEeeccCceecccCcccccccCCCc
Confidence 99999999998764443334445553
No 162
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=99.91 E-value=1.7e-24 Score=233.08 Aligned_cols=154 Identities=24% Similarity=0.337 Sum_probs=125.0
Q ss_pred cceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCC-CCCceeEeecccccccCCCCeeeEEEEc
Q 003368 648 THLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIR-HRNLVRVITSCSSIDFQGNDFKALVYQY 726 (825)
Q Consensus 648 ~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~l~~~~~~~~~~~~~~~~lv~e~ 726 (825)
.+.||+|+||.||+|++..+|+.||||++... ....+.+|++++..++ |||||++++++ .++...++||||
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~~~~-----~~~~~~~lv~e~ 87 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLHEVF-----HDQLHTFLVMEL 87 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEEEEE-----ECSSEEEEEECC
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEEEEE-----EcCCEEEEEEEc
Confidence 47899999999999999989999999999753 3466789999999997 99999999985 346788999999
Q ss_pred cCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCC---cEEEcc
Q 003368 727 MPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNL---TAHVGD 803 (825)
Q Consensus 727 ~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~---~~ki~D 803 (825)
+++|+|.+++.. ...+++.++..|+.|+++||+|||+. +|+||||||+|||++.++ .+||+|
T Consensus 88 ~~~~~L~~~l~~------------~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~D 152 (325)
T 3kn6_A 88 LNGGELFERIKK------------KKHFSETEASYIMRKLVSAVSHMHDV---GVVHRDLKPENLLFTDENDNLEIKIID 152 (325)
T ss_dssp CCSCBHHHHHHH------------CSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEC----CEEEECC
T ss_pred cCCCcHHHHHHh------------cCCCCHHHHHHHHHHHHHHHHHHHHC---CCeecCCCHHHEEEecCCCcccEEEec
Confidence 999999999853 24689999999999999999999985 999999999999997765 899999
Q ss_pred cCcccccccCCCCCccccccC
Q 003368 804 FGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 804 FGla~~~~~~~~~~~~~~gt~ 824 (825)
||+|+............+||+
T Consensus 153 fg~a~~~~~~~~~~~~~~~t~ 173 (325)
T 3kn6_A 153 FGFARLKPPDNQPLKTPCFTL 173 (325)
T ss_dssp CTTCEECCC------------
T ss_pred cccceecCCCCCcccccCCCc
Confidence 999997765444444445543
No 163
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=99.91 E-value=1.2e-24 Score=230.29 Aligned_cols=160 Identities=24% Similarity=0.402 Sum_probs=130.5
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc--hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCee
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ--GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFK 720 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~--~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~ 720 (825)
++|...+.||+|+||+||+|+. .+|+.||||++..... ...+.+.+|++++++++||||+++++++. ..+..
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~~~~ 75 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQN-NYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIH-----TKKRL 75 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEE-TTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEE-----CSSCE
T ss_pred ccchhhhhcccCCCEEEEEEEc-CCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEc-----cCCeE
Confidence 4688899999999999999998 6899999999975432 23467889999999999999999999853 35678
Q ss_pred eEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcEE
Q 003368 721 ALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTAH 800 (825)
Q Consensus 721 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~k 800 (825)
++||||+++ +|.+++... ...+++.++..++.|+++||+|||+. +|+||||||+||+++.++.+|
T Consensus 76 ~lv~e~~~~-~l~~~~~~~-----------~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~k 140 (288)
T 1ob3_A 76 VLVFEHLDQ-DLKKLLDVC-----------EGGLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELK 140 (288)
T ss_dssp EEEEECCSE-EHHHHHHTS-----------TTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEE
T ss_pred EEEEEecCC-CHHHHHHhc-----------ccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEE
Confidence 999999985 898888532 23588999999999999999999985 999999999999999999999
Q ss_pred EcccCcccccccCCCCCcccccc
Q 003368 801 VGDFGLARLRQEVPNNQSSSVGD 823 (825)
Q Consensus 801 i~DFGla~~~~~~~~~~~~~~gt 823 (825)
|+|||+|+.............||
T Consensus 141 l~Dfg~~~~~~~~~~~~~~~~~t 163 (288)
T 1ob3_A 141 IADFGLARAFGIPVRKYTHEIVT 163 (288)
T ss_dssp ECCTTHHHHHCC---------CC
T ss_pred EeECccccccCcccccccccccc
Confidence 99999998765433233333444
No 164
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=4.2e-24 Score=223.83 Aligned_cols=206 Identities=22% Similarity=0.263 Sum_probs=124.8
Q ss_pred CcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEc
Q 003368 32 RRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYL 111 (825)
Q Consensus 32 ~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 111 (825)
.+++.|+++++.+.. .+.+..+++|++|+|++|++++. ..++.+++|++|+|++|+|++..+..|..+++|++|+|
T Consensus 41 ~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 41 NSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp TTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 456666666666542 12356666666666666666642 35666666666666666666666666666666666666
Q ss_pred CCCCCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcCCccc
Q 003368 112 GRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSI 191 (825)
Q Consensus 112 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i 191 (825)
++|++++..+..|..+++|++|+|++|++++..+..|+.+++|+.|+|++|++++..+..|+.+++|+.|
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L---------- 186 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL---------- 186 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE----------
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEE----------
Confidence 6666666555566666666666666666665555556666666666666666665555555555555555
Q ss_pred cCCCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccCccccCcCCCC
Q 003368 192 YNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGKLSVNFGDMK 268 (825)
Q Consensus 192 ~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 268 (825)
++++|++++ +|+..+..+++|+.|+|++|.+.+ .+++|+.|++..|++.|.+|..++.+.
T Consensus 187 ---------~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 187 ---------RLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp ---------ECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred ---------ECCCCcCCc-cCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence 555666664 333333356666666666666653 244566666666666666665555443
No 165
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=99.91 E-value=1.6e-24 Score=231.84 Aligned_cols=161 Identities=29% Similarity=0.394 Sum_probs=132.2
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc--hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCee
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ--GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFK 720 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~--~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~ 720 (825)
++|+..+.||+|+||.||+|+...+|+.||||++..... ...+.+.+|++++++++||||+++++++. ..+..
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~~~~~ 77 (311)
T 4agu_A 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFR-----RKRRL 77 (311)
T ss_dssp CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----ETTEE
T ss_pred ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheee-----cCCeE
Confidence 568889999999999999999988999999999865433 23467889999999999999999999864 35678
Q ss_pred eEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcEE
Q 003368 721 ALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTAH 800 (825)
Q Consensus 721 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~k 800 (825)
++||||+++++|.+++... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+|
T Consensus 78 ~lv~e~~~~~~l~~~~~~~------------~~~~~~~~~~i~~~l~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~k 142 (311)
T 4agu_A 78 HLVFEYCDHTVLHELDRYQ------------RGVPEHLVKSITWQTLQAVNFCHKH---NCIHRDVKPENILITKHSVIK 142 (311)
T ss_dssp EEEEECCSEEHHHHHHHTS------------SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEE
T ss_pred EEEEEeCCCchHHHHHhhh------------cCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCChhhEEEcCCCCEE
Confidence 9999999999999887422 3588999999999999999999986 999999999999999999999
Q ss_pred EcccCcccccccCCCCCcccccc
Q 003368 801 VGDFGLARLRQEVPNNQSSSVGD 823 (825)
Q Consensus 801 i~DFGla~~~~~~~~~~~~~~gt 823 (825)
|+|||+|+............+||
T Consensus 143 l~Dfg~~~~~~~~~~~~~~~~~~ 165 (311)
T 4agu_A 143 LCDFGFARLLTGPSDYYDDEVAT 165 (311)
T ss_dssp ECCCTTCEECC------------
T ss_pred EeeCCCchhccCcccccCCCcCC
Confidence 99999999876543333333444
No 166
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=3.7e-24 Score=224.30 Aligned_cols=200 Identities=25% Similarity=0.286 Sum_probs=121.4
Q ss_pred CCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccc
Q 003368 52 IGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLK 131 (825)
Q Consensus 52 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 131 (825)
+..+++|++|++++|.++. + ..+..+++|++|+|++|++++. ..+..+++|++|+|++|++++..+..|..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 4466777777777777762 2 2466677777777777777653 3566777777777777777766666677777777
Q ss_pred eeeccccccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcCCccccCCCCCceeecCCccccccC
Q 003368 132 ELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSL 211 (825)
Q Consensus 132 ~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~l 211 (825)
+|+|++|++++..+..|+++++|++|+|++|++++..+..|..++
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~----------------------------------- 157 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT----------------------------------- 157 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----------------------------------
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCc-----------------------------------
Confidence 777777777766666677777777777777777655444444444
Q ss_pred CchhhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccCccccCcCCCCCCcEEEcccccCCCCCCCccccc
Q 003368 212 PPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLAYLNVAINNLGSGESDEMSFI 291 (825)
Q Consensus 212 p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~ 291 (825)
+|+.|+|++|++++..+..|..+++|+.|+|++|++.+..+..+..+++|++|++++|.+.
T Consensus 158 ---------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---------- 218 (272)
T 3rfs_A 158 ---------NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---------- 218 (272)
T ss_dssp ---------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC----------
T ss_pred ---------cCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc----------
Confidence 4444444444444444444455555555555555555444444444444444444444332
Q ss_pred cccccCCCCCEEEcccccccc
Q 003368 292 HSLANCSNLSFLNLVANQFKG 312 (825)
Q Consensus 292 ~~~~~l~~L~~L~L~~N~l~~ 312 (825)
+.+++|+.|+++.|.++|
T Consensus 219 ---~~~~~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 219 ---CTCPGIRYLSEWINKHSG 236 (272)
T ss_dssp ---CCTTTTHHHHHHHHHTGG
T ss_pred ---ccCcHHHHHHHHHHhCCC
Confidence 224456666677777766
No 167
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=99.91 E-value=2.5e-24 Score=233.19 Aligned_cols=159 Identities=22% Similarity=0.352 Sum_probs=133.8
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcC-CCCCceeEeecccccccCCCCee
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNI-RHRNLVRVITSCSSIDFQGNDFK 720 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~~~~ 720 (825)
.++|...+.||+|+||+||+|+.+.+|+.||||++...... +.+|++++.++ +|||||++++++ .+++..
T Consensus 21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~----~~~E~~~l~~~~~hp~iv~~~~~~-----~~~~~~ 91 (342)
T 2qr7_A 21 TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRD----PTEEIEILLRYGQHPNIITLKDVY-----DDGKYV 91 (342)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTCC----CHHHHHHHHHHTTSTTBCCEEEEE-----ECSSEE
T ss_pred cccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccCC----hHHHHHHHHHhcCCCCcCeEEEEE-----EcCCEE
Confidence 45688999999999999999999999999999999765432 35688888887 799999999984 456789
Q ss_pred eEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecC-C---
Q 003368 721 ALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDN-N--- 796 (825)
Q Consensus 721 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~-~--- 796 (825)
|+||||+++|+|.+++... ..+++.++..++.|++.||+|||+. +|+||||||+|||+.+ +
T Consensus 92 ~lv~E~~~gg~L~~~i~~~------------~~~~~~~~~~~~~qi~~al~~lH~~---givHrDlkp~NIl~~~~~~~~ 156 (342)
T 2qr7_A 92 YVVTELMKGGELLDKILRQ------------KFFSEREASAVLFTITKTVEYLHAQ---GVVHRDLKPSNILYVDESGNP 156 (342)
T ss_dssp EEEECCCCSCBHHHHHHTC------------TTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSCSG
T ss_pred EEEEeCCCCCcHHHHHHHc------------CCCCHHHHHHHHHHHHHHHHHHHHC---CcEeccCCHHHEEEecCCCCc
Confidence 9999999999999998532 3589999999999999999999986 9999999999999843 3
Q ss_pred CcEEEcccCcccccccCCCCCccccccC
Q 003368 797 LTAHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 797 ~~~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
+.+||+|||+|+..........+.+||+
T Consensus 157 ~~~kl~Dfg~a~~~~~~~~~~~~~~gt~ 184 (342)
T 2qr7_A 157 ESIRICDFGFAKQLRAENGLLMTPCYTA 184 (342)
T ss_dssp GGEEECCCTTCEECBCTTCCBCCSSCCS
T ss_pred CeEEEEECCCcccCcCCCCceeccCCCc
Confidence 3599999999998766544445566665
No 168
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=99.91 E-value=2.2e-24 Score=238.89 Aligned_cols=166 Identities=24% Similarity=0.370 Sum_probs=137.9
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc-chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCeee
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL-QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFKA 721 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~~ 721 (825)
+.|...++||+|+||.||+|++..+|+.||||++.... ....+.+.+|++++++++|||||++++++.. ......+
T Consensus 9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~---~~~~~~~ 85 (396)
T 4eut_A 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEE---TTTRHKV 85 (396)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEEC---TTTCCEE
T ss_pred CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeecc---CCCCeeE
Confidence 46888999999999999999998899999999997543 2345678899999999999999999998643 2234679
Q ss_pred EEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeee----cCCC
Q 003368 722 LVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILL----DNNL 797 (825)
Q Consensus 722 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl----~~~~ 797 (825)
+||||+++|+|.+++... .....+++.++..++.|++.||+|||+. +|+||||||+|||+ +.++
T Consensus 86 lv~e~~~~g~L~~~l~~~---------~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~ 153 (396)
T 4eut_A 86 LIMEFCPCGSLYTVLEEP---------SNAYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQS 153 (396)
T ss_dssp EEECCCTTEEHHHHTTSG---------GGTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEECTTSCE
T ss_pred EEEecCCCCCHHHHHHhh---------hcccCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCcCHHHEEEeecCCCce
Confidence 999999999999999532 1223489999999999999999999986 89999999999999 7788
Q ss_pred cEEEcccCcccccccCCCCCccccccC
Q 003368 798 TAHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 798 ~~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
.+||+|||+|+...... .....+||+
T Consensus 154 ~~kL~DFG~a~~~~~~~-~~~~~~gt~ 179 (396)
T 4eut_A 154 VYKLTDFGAARELEDDE-QFVSLYGTE 179 (396)
T ss_dssp EEEECCGGGCEECCCGG-GSSCSSSCC
T ss_pred eEEEecCCCceEccCCC-ccccccCCc
Confidence 89999999999875542 223344554
No 169
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=99.91 E-value=1.5e-24 Score=235.77 Aligned_cols=150 Identities=23% Similarity=0.354 Sum_probs=120.8
Q ss_pred hcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCee
Q 003368 641 ATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFK 720 (825)
Q Consensus 641 ~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~ 720 (825)
..+.|...+.||+|+||.||+|+...+++.||||++.... ..+.+.+|++++++++||||++++++|. ..+..
T Consensus 51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~-----~~~~~ 123 (349)
T 2w4o_A 51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFE-----TPTEI 123 (349)
T ss_dssp GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEE-----CSSEE
T ss_pred ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEe-----cCCeE
Confidence 3467889999999999999999998899999999997543 3467889999999999999999999864 35678
Q ss_pred eEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecC---CC
Q 003368 721 ALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDN---NL 797 (825)
Q Consensus 721 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~---~~ 797 (825)
++||||+++|+|.+++... ..+++.++..++.|+++||+|||+. +|+||||||+||+++. ++
T Consensus 124 ~lv~e~~~~~~L~~~l~~~------------~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIll~~~~~~~ 188 (349)
T 2w4o_A 124 SLVLELVTGGELFDRIVEK------------GYYSERDAADAVKQILEAVAYLHEN---GIVHRDLKPENLLYATPAPDA 188 (349)
T ss_dssp EEEECCCCSCBHHHHHTTC------------SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESSSSTTC
T ss_pred EEEEEeCCCCCHHHHHHhc------------CCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCcccEEEecCCCCC
Confidence 9999999999999998532 3588999999999999999999986 8999999999999975 88
Q ss_pred cEEEcccCccccccc
Q 003368 798 TAHVGDFGLARLRQE 812 (825)
Q Consensus 798 ~~ki~DFGla~~~~~ 812 (825)
.+||+|||+|+....
T Consensus 189 ~~kl~Dfg~a~~~~~ 203 (349)
T 2w4o_A 189 PLKIADFGLSKIVEH 203 (349)
T ss_dssp CEEECCCC-------
T ss_pred CEEEccCccccccCc
Confidence 999999999997654
No 170
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=1.1e-23 Score=222.51 Aligned_cols=206 Identities=21% Similarity=0.261 Sum_probs=183.1
Q ss_pred CCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhccccc
Q 003368 51 QIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNL 130 (825)
Q Consensus 51 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 130 (825)
.+.++++++++++++|+++ .+|..+. ++++.|+|++|+|++..|..|..+++|++|+|++|+|++..+. ..+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence 3678899999999999999 5676664 6899999999999999999999999999999999999975443 789999
Q ss_pred ceeeccccccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcCCccccCCCCCceeecCCcccccc
Q 003368 131 KELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGS 210 (825)
Q Consensus 131 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~ 210 (825)
++|+|++|+|+ .+|..+..+++|++|+|++|+|++..|..|.++++|++| ++++|+++ .
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L-------------------~L~~N~l~-~ 138 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL-------------------YLKGNELK-T 138 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEE-------------------ECTTSCCC-C
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEE-------------------ECCCCCCC-c
Confidence 99999999999 678899999999999999999998888888888888888 77888888 5
Q ss_pred CCchhhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccCccccCcCCCCCCcEEEcccccCCCC
Q 003368 211 LPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLAYLNVAINNLGSG 283 (825)
Q Consensus 211 lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~ 283 (825)
+|...+..+++|+.|+|++|+|++..+..|..+++|+.|+|++|++. .+|..+..+.+|+.+++++|.+...
T Consensus 139 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred cChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 66666668999999999999999888888999999999999999998 5666777788999999999998754
No 171
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=99.91 E-value=1.4e-24 Score=234.53 Aligned_cols=149 Identities=26% Similarity=0.360 Sum_probs=130.3
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcC-CCCCceeEeecccccccCCCCeee
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNI-RHRNLVRVITSCSSIDFQGNDFKA 721 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~~~~~ 721 (825)
++|...+.||+|+||.||+|+...+|+.||||++..... .+.+.+|+++++++ +||||+++++++. .++..+
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~E~~~l~~l~~h~~i~~~~~~~~-----~~~~~~ 81 (330)
T 2izr_A 9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR--APQLHLEYRFYKQLGSGDGIPQVYYFGP-----CGKYNA 81 (330)
T ss_dssp TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS--SCCHHHHHHHHHHHCSCTTSCCEEEEEE-----ETTEEE
T ss_pred CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc--hHHHHHHHHHHHHhhCCCCCCEEEEEEe-----cCCccE
Confidence 578999999999999999999988999999999875432 34688999999999 8999999999854 356789
Q ss_pred EEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc---
Q 003368 722 LVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT--- 798 (825)
Q Consensus 722 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~--- 798 (825)
+||||+ +|+|.+++... ...+++.++..|+.|++.||+|||+. +|+||||||+|||++.++.
T Consensus 82 lv~e~~-~~~L~~~~~~~-----------~~~~~~~~~~~i~~qi~~~l~~LH~~---~iiHrDlkp~Nill~~~~~~~~ 146 (330)
T 2izr_A 82 MVLELL-GPSLEDLFDLC-----------DRTFSLKTVLMIAIQLISRMEYVHSK---NLIYRDVKPENFLIGRPGNKTQ 146 (330)
T ss_dssp EEEECC-CCBHHHHHHHT-----------TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTCT
T ss_pred EEEEeC-CCCHHHHHHHc-----------CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeeccCCCCCC
Confidence 999999 99999998521 24689999999999999999999986 9999999999999998887
Q ss_pred --EEEcccCcccccccC
Q 003368 799 --AHVGDFGLARLRQEV 813 (825)
Q Consensus 799 --~ki~DFGla~~~~~~ 813 (825)
+||+|||+|+.....
T Consensus 147 ~~~kl~DFg~a~~~~~~ 163 (330)
T 2izr_A 147 QVIHIIDFALAKEYIDP 163 (330)
T ss_dssp TSEEECCCTTCEESBCT
T ss_pred ceEEEEEcccceeeecC
Confidence 999999999987554
No 172
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=99.91 E-value=3.2e-24 Score=224.44 Aligned_cols=150 Identities=26% Similarity=0.442 Sum_probs=131.6
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCeee
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFKA 721 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~~ 721 (825)
.++|...+.||+|+||.||+|++. +++.||||++..... ..+++.+|++++++++||||+++++++. ++...+
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~~~~~~ 81 (269)
T 4hcu_A 9 PSELTFVQEIGSGQFGLVHLGYWL-NKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCL-----EQAPIC 81 (269)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEET-TTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEEC-----SSSSEE
T ss_pred hhhceeeheecCCCccEEEEEEec-CCCeEEEEEeccccc-CHHHHHHHHHHHHhCCCCCEeeEEEEEe-----cCCceE
Confidence 356888999999999999999984 688899999976533 3467999999999999999999999853 356789
Q ss_pred EEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcEEE
Q 003368 722 LVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTAHV 801 (825)
Q Consensus 722 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ki 801 (825)
+||||+++|+|.+++... ...+++..+..++.|+++|++|||+. +|+||||||+||+++.++.+||
T Consensus 82 lv~e~~~~~~L~~~l~~~-----------~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl 147 (269)
T 4hcu_A 82 LVFEFMEHGCLSDYLRTQ-----------RGLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKV 147 (269)
T ss_dssp EEEECCTTCBHHHHHHTT-----------TTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECGGGCEEE
T ss_pred EEEEeCCCCcHHHHHHhc-----------CcccCHHHHHHHHHHHHHHHHHHHhC---CeecCCcchheEEEcCCCCEEe
Confidence 999999999999998532 23588999999999999999999986 8999999999999999999999
Q ss_pred cccCccccccc
Q 003368 802 GDFGLARLRQE 812 (825)
Q Consensus 802 ~DFGla~~~~~ 812 (825)
+|||+|+....
T Consensus 148 ~Dfg~~~~~~~ 158 (269)
T 4hcu_A 148 SDFGMTRFVLD 158 (269)
T ss_dssp CCTTGGGGBCC
T ss_pred ccccccccccc
Confidence 99999987643
No 173
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=99.91 E-value=2.8e-24 Score=227.46 Aligned_cols=151 Identities=25% Similarity=0.405 Sum_probs=132.6
Q ss_pred cccccccceeccCCeeEEEEEEEcCCC-------eEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeeccccccc
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDG-------TIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDF 714 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g-------~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~ 714 (825)
.++|...+.||+|+||.||+|+...++ ..||+|++........+.+.+|++++++++||||++++++|.
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~---- 82 (289)
T 4fvq_A 7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCV---- 82 (289)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEEC----
T ss_pred hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEE----
Confidence 356888999999999999999987766 579999998766666788999999999999999999999864
Q ss_pred CCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeec
Q 003368 715 QGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLD 794 (825)
Q Consensus 715 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~ 794 (825)
.++..++||||+++|+|.+++... ...+++.++..++.|+++||+|||+. +|+||||||+||+++
T Consensus 83 -~~~~~~lv~e~~~~~~L~~~l~~~-----------~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~ 147 (289)
T 4fvq_A 83 -CGDENILVQEFVKFGSLDTYLKKN-----------KNCINILWKLEVAKQLAAAMHFLEEN---TLIHGNVCAKNILLI 147 (289)
T ss_dssp -CTTCCEEEEECCTTCBHHHHHHHT-----------GGGCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEE
T ss_pred -eCCCCEEEEECCCCCCHHHHHHhC-----------CCCCCHHHHHHHHHHHHHHHHHHhhC---CeECCCcCcceEEEe
Confidence 356679999999999999999532 23489999999999999999999986 899999999999999
Q ss_pred CCCc--------EEEcccCcccccc
Q 003368 795 NNLT--------AHVGDFGLARLRQ 811 (825)
Q Consensus 795 ~~~~--------~ki~DFGla~~~~ 811 (825)
.++. +||+|||+++...
T Consensus 148 ~~~~~~~~~~~~~kl~Dfg~~~~~~ 172 (289)
T 4fvq_A 148 REEDRKTGNPPFIKLSDPGISITVL 172 (289)
T ss_dssp ECCBGGGTBCCEEEECCCCSCTTTS
T ss_pred cCCcccccccceeeeccCccccccc
Confidence 8887 9999999997653
No 174
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=99.91 E-value=1.6e-24 Score=246.84 Aligned_cols=153 Identities=27% Similarity=0.490 Sum_probs=134.8
Q ss_pred hcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCee
Q 003368 641 ATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFK 720 (825)
Q Consensus 641 ~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~ 720 (825)
..++|...+.||+|+||.||+|++..++..||||.++... ...++|.+|++++++++|||||+++++|.. ....
T Consensus 218 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~l~~~~~~-----~~~~ 291 (495)
T 1opk_A 218 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTR-----EPPF 291 (495)
T ss_dssp CGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-----SSSC
T ss_pred CHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcc-cchHHHHHHHHHHHhcCCCCEeeEEEEEec-----CCcE
Confidence 3456888999999999999999998889999999997653 345789999999999999999999999643 5678
Q ss_pred eEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcEE
Q 003368 721 ALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTAH 800 (825)
Q Consensus 721 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~k 800 (825)
++||||+++|+|.+++... ....+++..+..|+.||++||+|||+. +|+||||||+|||++.++.+|
T Consensus 292 ~lv~E~~~~g~L~~~l~~~----------~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~k 358 (495)
T 1opk_A 292 YIITEFMTYGNLLDYLREC----------NRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRNLAARNCLVGENHLVK 358 (495)
T ss_dssp EEEEECCTTCBHHHHHHHS----------CTTTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCEE
T ss_pred EEEEEccCCCCHHHHHHhc----------CcCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChhhEEECCCCcEE
Confidence 9999999999999999532 123588999999999999999999985 899999999999999999999
Q ss_pred EcccCccccccc
Q 003368 801 VGDFGLARLRQE 812 (825)
Q Consensus 801 i~DFGla~~~~~ 812 (825)
|+|||+|+....
T Consensus 359 l~DFG~a~~~~~ 370 (495)
T 1opk_A 359 VADFGLSRLMTG 370 (495)
T ss_dssp ECCTTCEECCTT
T ss_pred EeecccceeccC
Confidence 999999998754
No 175
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=99.91 E-value=9.9e-25 Score=239.04 Aligned_cols=158 Identities=27% Similarity=0.417 Sum_probs=130.2
Q ss_pred cccccccceeccCCeeEEEEEEE-----cCCCeEEEEEEeeccc-chhHHHHHHHHHHhhcCCCCCceeEeecccccccC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTF-----DRDGTIVAIKVLNLQL-QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQ 715 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~-----~~~g~~vAvK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~ 715 (825)
.++|...+.||+|+||+||+|++ ..+++.||||+++... ......+.+|+.++++++|||||++++++.
T Consensus 70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~----- 144 (367)
T 3l9p_A 70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSL----- 144 (367)
T ss_dssp GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-----
T ss_pred HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEe-----
Confidence 35688899999999999999994 3467899999997543 334567899999999999999999999853
Q ss_pred CCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecC
Q 003368 716 GNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDN 795 (825)
Q Consensus 716 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~ 795 (825)
.....++||||+++|+|.+++...... ......+++.++..|+.|+++||+|||+. +|+||||||+|||++.
T Consensus 145 ~~~~~~lv~e~~~~g~L~~~l~~~~~~-----~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~ 216 (367)
T 3l9p_A 145 QSLPRFILLELMAGGDLKSFLRETRPR-----PSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTC 216 (367)
T ss_dssp SSSSCEEEEECCTTEEHHHHHHHHSCC-----SSSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESC
T ss_pred cCCCCEEEEEeCCCCCHHHHHHhhccc-----cCccccccHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEEec
Confidence 356679999999999999999643110 11224689999999999999999999986 9999999999999995
Q ss_pred CC---cEEEcccCccccccc
Q 003368 796 NL---TAHVGDFGLARLRQE 812 (825)
Q Consensus 796 ~~---~~ki~DFGla~~~~~ 812 (825)
++ .+||+|||+|+....
T Consensus 217 ~~~~~~~kL~DFG~a~~~~~ 236 (367)
T 3l9p_A 217 PGPGRVAKIGDFGMARDIYR 236 (367)
T ss_dssp SSTTCCEEECCCHHHHHHHH
T ss_pred CCCCceEEECCCcccccccc
Confidence 54 599999999986543
No 176
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=99.91 E-value=2.3e-24 Score=240.33 Aligned_cols=161 Identities=22% Similarity=0.317 Sum_probs=128.5
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc--------hhHHHHHHHHHHhhcCCCCCceeEeecccccc
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ--------GASKSFAAECRALRNIRHRNLVRVITSCSSID 713 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~--------~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~ 713 (825)
.++|...+.||+|+||+||+|+...+++.||||++..... .....+.+|++++++++|||||++++++.
T Consensus 134 ~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~--- 210 (419)
T 3i6u_A 134 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD--- 210 (419)
T ss_dssp HTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEE---
T ss_pred hccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEe---
Confidence 4678999999999999999999999999999999975421 11235889999999999999999999852
Q ss_pred cCCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeee
Q 003368 714 FQGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILL 793 (825)
Q Consensus 714 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl 793 (825)
.+..++||||+++|+|.+++... ..+++.++..|+.|+++||+|||+. +|+||||||+|||+
T Consensus 211 ---~~~~~lv~e~~~~g~L~~~l~~~------------~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~NIll 272 (419)
T 3i6u_A 211 ---AEDYYIVLELMEGGELFDKVVGN------------KRLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLL 272 (419)
T ss_dssp ---SSEEEEEEECCTTCBGGGGTSSS------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEE
T ss_pred ---cCceEEEEEcCCCCcHHHHHhcc------------CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEE
Confidence 34579999999999999988532 3689999999999999999999986 89999999999999
Q ss_pred cCC---CcEEEcccCcccccccCCCCCccccccC
Q 003368 794 DNN---LTAHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 794 ~~~---~~~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
+.+ +.+||+|||+|+...... ...+.+||+
T Consensus 273 ~~~~~~~~~kl~DFG~a~~~~~~~-~~~~~~gt~ 305 (419)
T 3i6u_A 273 SSQEEDCLIKITDFGHSKILGETS-LMRTLCGTP 305 (419)
T ss_dssp SSSSSSCCEEECCSSTTTSCC------------C
T ss_pred ecCCCcceEEEeecccceecCCCc-cccccCCCC
Confidence 654 459999999999875432 223445553
No 177
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=1.7e-27 Score=278.99 Aligned_cols=429 Identities=17% Similarity=0.168 Sum_probs=262.3
Q ss_pred CceeeceeecCCCCcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCccc---ccCCcc------------ccCCCCCC
Q 003368 19 FCDWEGITCSPRHRRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQ---GKIPGE------------IGRLFRLE 83 (825)
Q Consensus 19 ~C~~~g~~c~~~~~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~---~~~p~~------------~~~l~~L~ 83 (825)
|+.|.++... ....++++..... .....+..+++|++|+|++|... +..|.. +..+++|+
T Consensus 34 ck~W~~~~~~----~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~ 108 (594)
T 2p1m_B 34 CKSWYEIERW----CRRKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLE 108 (594)
T ss_dssp CHHHHHHHHH----HCCEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCC
T ss_pred HHHHHHhhhh----hceEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCC
Confidence 4468888322 2234555432211 12234567788999999987532 122222 34678999
Q ss_pred EEECCCCcCCCCCCcCCC-CCCCCCEEEcCCC-CCCCC-CChhhhcccccceeeccccccccccCccC----CCCCCCCE
Q 003368 84 ALYLSHNSLVGEIPGNLS-YCSRLIGLYLGRN-KLEGS-IPSEFVSLYNLKELAIQENNLTGGIPHFL----GNITSLEA 156 (825)
Q Consensus 84 ~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~----~~l~~L~~ 156 (825)
+|+|++|.+++..+..+. .+++|++|+|++| .++.. ++..+.++++|++|+|++|.+++..+..+ ..+++|+.
T Consensus 109 ~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~ 188 (594)
T 2p1m_B 109 EIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVS 188 (594)
T ss_dssp EEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCE
T ss_pred eEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcE
Confidence 999999999877776665 6899999999999 55532 44555689999999999999886554444 36679999
Q ss_pred EEcccCc--Ccc-cCCcccccccccceecCcCcCCccccCCCCCceeecCCc-cccccCCchhhhcCCCCcEEEcccc--
Q 003368 157 ISLAYNS--LGG-NIPSSLGQLKELKSLGLGGTIPPSIYNLSLLANFSVPEN-RLHGSLPPSLGLTLSNLQLFQISNN-- 230 (825)
Q Consensus 157 L~Ls~N~--l~~-~~p~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N-~l~~~lp~~~~~~l~~L~~L~Ls~N-- 230 (825)
|+|++|. ++. .++..+..+++|++| ++++| .+. .+|..+. .+++|+.|+++.+
T Consensus 189 L~l~~~~~~~~~~~l~~l~~~~~~L~~L-------------------~L~~~~~~~-~l~~~~~-~~~~L~~L~l~~~~~ 247 (594)
T 2p1m_B 189 LNISCLASEVSFSALERLVTRCPNLKSL-------------------KLNRAVPLE-KLATLLQ-RAPQLEELGTGGYTA 247 (594)
T ss_dssp EECTTCCSCCCHHHHHHHHHHCTTCCEE-------------------ECCTTSCHH-HHHHHHH-HCTTCSEEECSBCCC
T ss_pred EEecccCCcCCHHHHHHHHHhCCCCcEE-------------------ecCCCCcHH-HHHHHHh-cCCcceEcccccccC
Confidence 9999987 221 111112334666666 45554 222 2444433 6677777774433
Q ss_pred -----cCCCCCCccccCCCCccEE-EeecccccCccccCcCCCCCCcEEEcccccCCCCCCCccccccccccCCCCCEEE
Q 003368 231 -----FFSGSFPLAFSNASNLQSL-EILGNNFFGKLSVNFGDMKSLAYLNVAINNLGSGESDEMSFIHSLANCSNLSFLN 304 (825)
Q Consensus 231 -----~l~~~~p~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~ 304 (825)
.+.+ ++..+.++++|+.| .+.+.. ...++..+..+++|+.|++++|.+.. ..+...+..+++|+.|+
T Consensus 248 ~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~-----~~l~~~~~~~~~L~~L~ 320 (594)
T 2p1m_B 248 EVRPDVYSG-LSVALSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQS-----YDLVKLLCQCPKLQRLW 320 (594)
T ss_dssp CCCHHHHHH-HHHHHHTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCH-----HHHHHHHTTCTTCCEEE
T ss_pred ccchhhHHH-HHHHHhcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCH-----HHHHHHHhcCCCcCEEe
Confidence 3333 22356677777777 333222 12333334456777788877776532 11223345778888888
Q ss_pred cccccccccCCCCcccccCCccccCCCCcCEEEc---------ccCcccccCCcccc-CCCCCCEEEccccccccccCcc
Q 003368 305 LVANQFKGALPHSIVSGSIPSEIGKLVSLYLIEM---------DHNQFEGKIPEEMS-RLQNLQFLNMRHNQLSGEIPSS 374 (825)
Q Consensus 305 L~~N~l~~~~~~~~~~~~ip~~l~~l~~L~~L~L---------~~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~ 374 (825)
+++| ++. ..++.....+++|+.|++ +.+.+++.....+. ++++|++|+++.|.+++..+..
T Consensus 321 l~~~-~~~--------~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~ 391 (594)
T 2p1m_B 321 VLDY-IED--------AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALIT 391 (594)
T ss_dssp EEGG-GHH--------HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHH
T ss_pred CcCc-cCH--------HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHH
Confidence 8877 432 022223345778888888 33555543333333 4889999999889988766555
Q ss_pred cc-CCCCCcEEEcc--c----Cccccc-----cCCCCCCCCccceeecCCCCCccccchhhhcccccccccccCCCcccc
Q 003368 375 FG-NLSSLVKLILG--N----NNLSGV-----IPSSLGNLKQLALLHLFQNDLSGAIPEEIFNISHMSDSLNFARNHLVG 442 (825)
Q Consensus 375 ~~-~l~~L~~L~Ls--~----N~l~~~-----~p~~~~~l~~L~~L~L~~N~l~g~ip~~~~~~~~l~~~l~l~~N~l~~ 442 (825)
+. .+++|+.|+++ + |.+++. ++..+..+++|+.|++++ .+++..+..+..
T Consensus 392 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~----------------- 453 (594)
T 2p1m_B 392 IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT----------------- 453 (594)
T ss_dssp HHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH-----------------
T ss_pred HHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHH-----------------
Confidence 54 57899999998 4 555521 111245677888888866 555433332222
Q ss_pred CCCccccccccccEEeecCceecccCCccc-cCCCCCCEEEccCCcCCCCCCc-cccCCCCCCEEECCCCcccc
Q 003368 443 SIPPKIGNLKVLRMFVVSSNNLSGEIPSEI-GSCFYLQEIYMAENFFRGSIPS-SLVSLKDLREIDLSQNNLSG 514 (825)
Q Consensus 443 ~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~-~~l~~L~~L~l~~N~l~g~~p~-~~~~l~~L~~Ldls~N~l~~ 514 (825)
.+++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++..+. .+..+++|+.|++++|+++.
T Consensus 454 -------~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 454 -------YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp -------HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred -------hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 14556777777777665444444 4567777777777777543332 33457788888888887754
No 178
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=99.91 E-value=4.3e-24 Score=230.32 Aligned_cols=154 Identities=25% Similarity=0.431 Sum_probs=135.7
Q ss_pred ccccccceeccCCeeEEEEEEE----cCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCC
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTF----DRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGND 718 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~----~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~ 718 (825)
++|+..+.||+|+||.||+|++ ..+++.||||++........+.+.+|++++++++||||+++++++.. .+..
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---~~~~ 99 (327)
T 3lxl_A 23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYG---PGRQ 99 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEC---SSSC
T ss_pred hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEec---CCCc
Confidence 5688899999999999999994 56889999999987766666789999999999999999999998643 3456
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..++||||+++|+|.+++.. ....+++.++..|+.|+++||+|||+. +|+||||||+||+++.++.
T Consensus 100 ~~~lv~e~~~~~~L~~~l~~-----------~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~ 165 (327)
T 3lxl_A 100 SLRLVMEYLPSGCLRDFLQR-----------HRARLDASRLLLYSSQICKGMEYLGSR---RCVHRDLAARNILVESEAH 165 (327)
T ss_dssp EEEEEEECCTTCBHHHHHHH-----------HGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTE
T ss_pred eEEEEEeecCCCCHHHHHHh-----------cccCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChhhEEECCCCC
Confidence 78999999999999999842 224689999999999999999999985 9999999999999999999
Q ss_pred EEEcccCcccccccC
Q 003368 799 AHVGDFGLARLRQEV 813 (825)
Q Consensus 799 ~ki~DFGla~~~~~~ 813 (825)
+||+|||+++.....
T Consensus 166 ~kl~Dfg~~~~~~~~ 180 (327)
T 3lxl_A 166 VKIADFGLAKLLPLD 180 (327)
T ss_dssp EEECCGGGCEECCTT
T ss_pred EEEcccccceecccC
Confidence 999999999987543
No 179
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=99.91 E-value=3.1e-24 Score=242.08 Aligned_cols=164 Identities=24% Similarity=0.254 Sum_probs=129.9
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc--chhHHHHHHHHHHhhcCCCCCceeEeecccccc-cCCCC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL--QGASKSFAAECRALRNIRHRNLVRVITSCSSID-FQGND 718 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~-~~~~~ 718 (825)
.++|+..+.||+|+||+||+|+...+|+.||||++.... ....+.+.+|+++++.++|||||++++++.... +.+..
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 140 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ 140 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence 467999999999999999999999999999999997542 334567889999999999999999999875321 12335
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..|+||||++++ +.+.+. ..+++.++..++.|+++||+|||+. +|+||||||+|||++.++.
T Consensus 141 ~~~lv~E~~~~~-l~~~~~--------------~~l~~~~~~~~~~qil~aL~~lH~~---~iiHrDlkp~NIll~~~~~ 202 (464)
T 3ttj_A 141 DVYLVMELMDAN-LCQVIQ--------------MELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCT 202 (464)
T ss_dssp EEEEEEECCSEE-HHHHHT--------------SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSC
T ss_pred eEEEEEeCCCCC-HHHHHh--------------hcCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChHhEEEeCCCC
Confidence 679999999864 655552 2478889999999999999999986 8999999999999999999
Q ss_pred EEEcccCcccccccCCCCCccccccC
Q 003368 799 AHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 799 ~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
+||+|||+|+..... ......+||+
T Consensus 203 ~kl~DFG~a~~~~~~-~~~~~~~gt~ 227 (464)
T 3ttj_A 203 LKILDFGLARTAGTS-FMMTPYVVTR 227 (464)
T ss_dssp EEECCCCCC-----C-CCC----CCC
T ss_pred EEEEEEEeeeecCCC-cccCCCcccc
Confidence 999999999987543 2334456664
No 180
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=99.91 E-value=1.4e-24 Score=234.81 Aligned_cols=162 Identities=23% Similarity=0.320 Sum_probs=137.0
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc--------hhHHHHHHHHHHhhcCCCCCceeEeecccccc
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ--------GASKSFAAECRALRNIRHRNLVRVITSCSSID 713 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~--------~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~ 713 (825)
.++|...+.||+|+||.||+|+...+|+.||||++..... ...+.+.+|++++++++||||+++++++
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~---- 98 (335)
T 3dls_A 23 SQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIF---- 98 (335)
T ss_dssp HHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEE----
T ss_pred ccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEE----
Confidence 4578999999999999999999999999999999976531 1234577899999999999999999985
Q ss_pred cCCCCeeeEEEEccCCC-ChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCee
Q 003368 714 FQGNDFKALVYQYMPNG-SLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNIL 792 (825)
Q Consensus 714 ~~~~~~~~lv~e~~~~g-sL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NIL 792 (825)
...+..++||||+.+| +|.+++... ..+++..+..|+.|++.||+|||+. +|+||||||+||+
T Consensus 99 -~~~~~~~lv~e~~~~g~~l~~~~~~~------------~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIl 162 (335)
T 3dls_A 99 -ENQGFFQLVMEKHGSGLDLFAFIDRH------------PRLDEPLASYIFRQLVSAVGYLRLK---DIIHRDIKDENIV 162 (335)
T ss_dssp -ECSSEEEEEEECCTTSCBHHHHHHTC------------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEE
T ss_pred -eeCCEEEEEEEeCCCCccHHHHHHhc------------CCCCHHHHHHHHHHHHHHHHHHHhC---CeEEeccCHHHEE
Confidence 3467889999999877 999988532 3689999999999999999999986 9999999999999
Q ss_pred ecCCCcEEEcccCcccccccCCCCCccccccC
Q 003368 793 LDNNLTAHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 793 l~~~~~~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
++.++.+||+|||+|+...... .....+||+
T Consensus 163 l~~~~~~kL~Dfg~a~~~~~~~-~~~~~~gt~ 193 (335)
T 3dls_A 163 IAEDFTIKLIDFGSAAYLERGK-LFYTFCGTI 193 (335)
T ss_dssp ECTTSCEEECCCTTCEECCTTC-CBCEECSCG
T ss_pred EcCCCcEEEeecccceECCCCC-ceeccCCCc
Confidence 9999999999999999876543 223445553
No 181
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=99.91 E-value=5.6e-24 Score=222.46 Aligned_cols=151 Identities=27% Similarity=0.454 Sum_probs=132.5
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCeee
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFKA 721 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~~ 721 (825)
.++|+..+.||+|+||.||+|++ .++..||||++..... ..+++.+|++++++++||||++++++|. .+...+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~~~~~~ 79 (268)
T 3sxs_A 7 REEITLLKELGSGQFGVVKLGKW-KGQYDVAVKMIKEGSM-SEDEFFQEAQTMMKLSHPKLVKFYGVCS-----KEYPIY 79 (268)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEE-TTTEEEEEEEECBTTB-CHHHHHHHHHHHHHCCCTTBCCEEEEEC-----SSSSEE
T ss_pred hhheeeeeeeccCCCceEEEEEe-cCceeEEEEEeccCCC-cHHHHHHHHHHHHhCCCCCEeeEEEEEc-----cCCceE
Confidence 46788999999999999999998 5778899999976533 3467999999999999999999999853 456789
Q ss_pred EEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcEEE
Q 003368 722 LVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTAHV 801 (825)
Q Consensus 722 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ki 801 (825)
+||||+++|+|.+++.. ....+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||
T Consensus 80 lv~e~~~~~~L~~~l~~-----------~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l 145 (268)
T 3sxs_A 80 IVTEYISNGCLLNYLRS-----------HGKGLEPSQLLEMCYDVCEGMAFLESH---QFIHRDLAARNCLVDRDLCVKV 145 (268)
T ss_dssp EEEECCTTCBHHHHHHH-----------HGGGCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCSGGGEEECTTCCEEE
T ss_pred EEEEccCCCcHHHHHHH-----------cCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCcCcceEEECCCCCEEE
Confidence 99999999999999842 234689999999999999999999985 9999999999999999999999
Q ss_pred cccCcccccccC
Q 003368 802 GDFGLARLRQEV 813 (825)
Q Consensus 802 ~DFGla~~~~~~ 813 (825)
+|||+|+.....
T Consensus 146 ~Dfg~~~~~~~~ 157 (268)
T 3sxs_A 146 SDFGMTRYVLDD 157 (268)
T ss_dssp CCTTCEEECCTT
T ss_pred ccCccceecchh
Confidence 999999876543
No 182
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=99.91 E-value=3.5e-24 Score=241.60 Aligned_cols=153 Identities=26% Similarity=0.489 Sum_probs=133.3
Q ss_pred HhhcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCC
Q 003368 639 LKATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGND 718 (825)
Q Consensus 639 ~~~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~ 718 (825)
....++|...+.||+|+||.||+|++ .++..||||+++... ...++|.+|++++++++|||||+++++|. .+
T Consensus 184 ~i~~~~~~~~~~lG~G~fg~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~------~~ 255 (454)
T 1qcf_A 184 EIPRESLKLEKKLGAGQFGEVWMATY-NKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVT------KE 255 (454)
T ss_dssp BCCGGGEEEEEEEECCSSEEEEEEEE-TTTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEEC------SS
T ss_pred eechHHeEEEEEcccCCceEEEEEEE-CCccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEe------CC
Confidence 34456788899999999999999999 467899999997653 34678999999999999999999999863 34
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..++||||+++|+|.+++... ....+++.++..++.|+|+||+|||+. +|+||||||+|||++.++.
T Consensus 256 ~~~lv~e~~~~g~L~~~l~~~----------~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~ 322 (454)
T 1qcf_A 256 PIYIITEFMAKGSLLDFLKSD----------EGSKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLV 322 (454)
T ss_dssp SCEEEECCCTTCBHHHHHHSH----------HHHTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTCC
T ss_pred ccEEEEeecCCCcHHHHHHhc----------cCCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEECCCCc
Confidence 579999999999999999531 224688999999999999999999986 8999999999999999999
Q ss_pred EEEcccCccccccc
Q 003368 799 AHVGDFGLARLRQE 812 (825)
Q Consensus 799 ~ki~DFGla~~~~~ 812 (825)
+||+|||+|+....
T Consensus 323 ~kl~DFG~a~~~~~ 336 (454)
T 1qcf_A 323 CKIADFGLARVIED 336 (454)
T ss_dssp EEECSTTGGGGBCC
T ss_pred EEEeeCCCceEcCC
Confidence 99999999997643
No 183
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=99.91 E-value=2.8e-24 Score=226.96 Aligned_cols=155 Identities=24% Similarity=0.320 Sum_probs=131.8
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc-hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCeee
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ-GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFKA 721 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~-~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~~ 721 (825)
+.|...+.||+|+||.||+|+...+|+.||||++..... ...+.+.+|++++++++||||+++++++. +....+
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-----~~~~~~ 96 (285)
T 3is5_A 22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFE-----DYHNMY 96 (285)
T ss_dssp HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSSEEE
T ss_pred hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHhee-----cCCeEE
Confidence 458889999999999999999988999999999976543 34578999999999999999999999853 466789
Q ss_pred EEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeee---cCCCc
Q 003368 722 LVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILL---DNNLT 798 (825)
Q Consensus 722 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl---~~~~~ 798 (825)
+||||+++|+|.+++... ......+++..+..|+.|+++||+|||+. +|+||||||+||++ +.++.
T Consensus 97 lv~e~~~~~~L~~~l~~~--------~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dikp~NIl~~~~~~~~~ 165 (285)
T 3is5_A 97 IVMETCEGGELLERIVSA--------QARGKALSEGYVAELMKQMMNALAYFHSQ---HVVHKDLKPENILFQDTSPHSP 165 (285)
T ss_dssp EEECCCSCCBHHHHHHHH--------HHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEESSSSTTCC
T ss_pred EEEEeCCCCcHHHHHHhh--------hhcccCCCHHHHHHHHHHHHHHHHHHHhC---CEEECCCCHHHEEEecCCCCCC
Confidence 999999999999988421 12235689999999999999999999985 89999999999999 45678
Q ss_pred EEEcccCcccccccC
Q 003368 799 AHVGDFGLARLRQEV 813 (825)
Q Consensus 799 ~ki~DFGla~~~~~~ 813 (825)
+||+|||+|+.....
T Consensus 166 ~kl~Dfg~a~~~~~~ 180 (285)
T 3is5_A 166 IKIIDFGLAELFKSD 180 (285)
T ss_dssp EEECCCCCCCC----
T ss_pred EEEEeeecceecCCc
Confidence 999999999876543
No 184
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=99.91 E-value=3.9e-24 Score=225.09 Aligned_cols=152 Identities=26% Similarity=0.412 Sum_probs=132.7
Q ss_pred hcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc---chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCC
Q 003368 641 ATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL---QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGN 717 (825)
Q Consensus 641 ~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~---~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 717 (825)
+.++|+..+.||+|+||.||+|+...+++.||||++.... ....+.+.+|++++++++||||++++++|. +.
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~ 81 (279)
T 3fdn_A 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH-----DA 81 (279)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEE-----CS
T ss_pred ecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEe-----cC
Confidence 4577999999999999999999999999999999986542 223567899999999999999999999853 45
Q ss_pred CeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCC
Q 003368 718 DFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNL 797 (825)
Q Consensus 718 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~ 797 (825)
...++||||+++|+|.+++.. ...+++..+..++.|++.|++|||+. +|+||||||+||+++.++
T Consensus 82 ~~~~lv~e~~~~~~l~~~l~~------------~~~~~~~~~~~~~~qi~~~l~~LH~~---~i~H~dlkp~Nili~~~~ 146 (279)
T 3fdn_A 82 TRVYLILEYAPLGTVYRELQK------------LSKFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAG 146 (279)
T ss_dssp SEEEEEECCCTTEEHHHHHHH------------HSSCCHHHHHHHHHHHHHHHHHHHTT---TCEECCCCGGGEEECTTS
T ss_pred CEEEEEEecCCCCcHHHHHHh------------cCCCCHHHHHHHHHHHHHHHHHHHhC---CEecccCChHhEEEcCCC
Confidence 678999999999999998842 24689999999999999999999985 999999999999999999
Q ss_pred cEEEcccCccccccc
Q 003368 798 TAHVGDFGLARLRQE 812 (825)
Q Consensus 798 ~~ki~DFGla~~~~~ 812 (825)
.+||+|||++.....
T Consensus 147 ~~~l~Dfg~~~~~~~ 161 (279)
T 3fdn_A 147 ELKIADFGWSVHAPS 161 (279)
T ss_dssp CEEECSCCEESCC--
T ss_pred CEEEEeccccccCCc
Confidence 999999999876543
No 185
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=99.91 E-value=4e-24 Score=226.91 Aligned_cols=164 Identities=22% Similarity=0.328 Sum_probs=133.4
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCeeeE
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFKAL 722 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~~l 722 (825)
+.|....+||+|+||.||+|+...+++.||||.+........+.+.+|+++++.++||||+++++++. ..+..++
T Consensus 22 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-----~~~~~~l 96 (295)
T 2clq_A 22 DENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFS-----ENGFIKI 96 (295)
T ss_dssp CTTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEE-----ETTEEEE
T ss_pred cCCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEE-----eCCcEEE
Confidence 34556679999999999999998899999999998766556678999999999999999999999864 3567899
Q ss_pred EEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecC-CCcEEE
Q 003368 723 VYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDN-NLTAHV 801 (825)
Q Consensus 723 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~-~~~~ki 801 (825)
||||+++|+|.+++... .....+++..+..++.|+++||+|||+. +|+||||||+||+++. ++.+||
T Consensus 97 v~e~~~~~~L~~~l~~~---------~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~kl 164 (295)
T 2clq_A 97 FMEQVPGGSLSALLRSK---------WGPLKDNEQTIGFYTKQILEGLKYLHDN---QIVHRDIKGDNVLINTYSGVLKI 164 (295)
T ss_dssp EEECCSEEEHHHHHHHT---------TCCCTTCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTCCEEE
T ss_pred EEEeCCCCCHHHHHHhh---------ccCCCccHHHHHHHHHHHHHHHHHHHhC---CEEccCCChhhEEEECCCCCEEE
Confidence 99999999999998532 1123467888999999999999999986 9999999999999987 899999
Q ss_pred cccCcccccccCCCCCcccccc
Q 003368 802 GDFGLARLRQEVPNNQSSSVGD 823 (825)
Q Consensus 802 ~DFGla~~~~~~~~~~~~~~gt 823 (825)
+|||+++.............||
T Consensus 165 ~Dfg~~~~~~~~~~~~~~~~~~ 186 (295)
T 2clq_A 165 SDFGTSKRLAGINPCTETFTGT 186 (295)
T ss_dssp CCTTTCEESCC-----CCCCCC
T ss_pred eecccccccCCCCCcccccCCC
Confidence 9999998765433223333444
No 186
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=99.91 E-value=2.4e-24 Score=234.00 Aligned_cols=166 Identities=25% Similarity=0.407 Sum_probs=135.4
Q ss_pred HhhcccccccceeccCCeeEEEEEEEc-----CCCeEEEEEEeecccc-hhHHHHHHHHHHhhcCCCCCceeEeeccccc
Q 003368 639 LKATDGFSSTHLIGIGSFGSVYKGTFD-----RDGTIVAIKVLNLQLQ-GASKSFAAECRALRNIRHRNLVRVITSCSSI 712 (825)
Q Consensus 639 ~~~~~~f~~~~~ig~G~~g~Vy~~~~~-----~~g~~vAvK~~~~~~~-~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~ 712 (825)
....++|...+.||+|+||.||+|++. .+++.||||+++.... ...+.|.+|++++++++||||++++++|.
T Consensus 43 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-- 120 (343)
T 1luf_A 43 EYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCA-- 120 (343)
T ss_dssp BCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC--
T ss_pred EecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc--
Confidence 334678999999999999999999986 3458999999976543 34567999999999999999999999864
Q ss_pred ccCCCCeeeEEEEccCCCChhhhccCCCCCCC------------cccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 003368 713 DFQGNDFKALVYQYMPNGSLENWLHPDAIPQT------------DEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEP 780 (825)
Q Consensus 713 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~------------~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ 780 (825)
..+..++||||+++|+|.+++........ .........+++.++..|+.|+++||+|||+. +
T Consensus 121 ---~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~---~ 194 (343)
T 1luf_A 121 ---VGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---K 194 (343)
T ss_dssp ---SSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT---T
T ss_pred ---cCCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhC---C
Confidence 35678999999999999999964311000 00001125799999999999999999999986 9
Q ss_pred eeecCCCCCCeeecCCCcEEEcccCccccccc
Q 003368 781 TIHCDLKPSNILLDNNLTAHVGDFGLARLRQE 812 (825)
Q Consensus 781 ivHrdlk~~NILl~~~~~~ki~DFGla~~~~~ 812 (825)
|+||||||+||+++.++.+||+|||+++....
T Consensus 195 ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~ 226 (343)
T 1luf_A 195 FVHRDLATRNCLVGENMVVKIADFGLSRNIYS 226 (343)
T ss_dssp CCCSCCSGGGEEECGGGCEEECCCSCHHHHTG
T ss_pred eecCCCCcceEEECCCCeEEEeecCCCccccc
Confidence 99999999999999999999999999987643
No 187
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=99.91 E-value=3.9e-24 Score=236.60 Aligned_cols=153 Identities=19% Similarity=0.256 Sum_probs=134.0
Q ss_pred hcccccccceeccC--CeeEEEEEEEcCCCeEEEEEEeeccc--chhHHHHHHHHHHhhcCCCCCceeEeecccccccCC
Q 003368 641 ATDGFSSTHLIGIG--SFGSVYKGTFDRDGTIVAIKVLNLQL--QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQG 716 (825)
Q Consensus 641 ~~~~f~~~~~ig~G--~~g~Vy~~~~~~~g~~vAvK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~ 716 (825)
..++|+..+.||+| +||.||+|+...+|+.||||++.... ....+.+.+|++++++++|||||++++++. .
T Consensus 23 ~~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~-----~ 97 (389)
T 3gni_B 23 EGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFI-----A 97 (389)
T ss_dssp CGGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----E
T ss_pred CCCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEE-----E
Confidence 34679999999999 99999999998899999999997653 233567889999999999999999999854 4
Q ss_pred CCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCC
Q 003368 717 NDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNN 796 (825)
Q Consensus 717 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~ 796 (825)
++..++||||+++|+|.+++... ....+++..+..|+.|+++||+|||+. +|+||||||+|||++.+
T Consensus 98 ~~~~~lv~e~~~~~~L~~~l~~~----------~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~ 164 (389)
T 3gni_B 98 DNELWVVTSFMAYGSAKDLICTH----------FMDGMNELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVD 164 (389)
T ss_dssp TTEEEEEEECCTTCBHHHHHHHT----------CTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTT
T ss_pred CCEEEEEEEccCCCCHHHHHhhh----------cccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCC
Confidence 67889999999999999998532 123589999999999999999999986 89999999999999999
Q ss_pred CcEEEcccCcccccc
Q 003368 797 LTAHVGDFGLARLRQ 811 (825)
Q Consensus 797 ~~~ki~DFGla~~~~ 811 (825)
+.+||+|||.+....
T Consensus 165 ~~~kl~dfg~~~~~~ 179 (389)
T 3gni_B 165 GKVYLSGLRSNLSMI 179 (389)
T ss_dssp CCEEECCGGGCEECE
T ss_pred CCEEEcccccceeec
Confidence 999999999987653
No 188
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=99.91 E-value=4.8e-24 Score=230.88 Aligned_cols=153 Identities=31% Similarity=0.488 Sum_probs=126.6
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHH--HhhcCCCCCceeEeecccccccCCCCe
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECR--ALRNIRHRNLVRVITSCSSIDFQGNDF 719 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~--~l~~l~H~niv~l~~~~~~~~~~~~~~ 719 (825)
.++|...+.||+|+||.||+|+. +++.||||++.... .+.+..|.+ .+..++||||+++++++......+...
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 86 (336)
T 3g2f_A 12 LDNLKLLELIGRGRYGAVYKGSL--DERPVAVKVFSFAN---RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRME 86 (336)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEE--TTEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEE
T ss_pred hHHhheeeecccCCCeEEEEEEE--CCeEEEEEEeeccc---hhhHHHHHHHHHHHhccCcchhhheecccccccCCCce
Confidence 46789999999999999999987 78999999997543 233444444 455689999999998765544555667
Q ss_pred eeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcC------CCCeeecCCCCCCeee
Q 003368 720 KALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHC------QEPTIHCDLKPSNILL 793 (825)
Q Consensus 720 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~------~~~ivHrdlk~~NILl 793 (825)
.++||||+++|+|.+++... ..+|..+..|+.|+++||+|||+.+ .++|+||||||+|||+
T Consensus 87 ~~lv~e~~~~g~L~~~l~~~-------------~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill 153 (336)
T 3g2f_A 87 YLLVMEYYPNGSLXKYLSLH-------------TSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLV 153 (336)
T ss_dssp EEEEECCCTTCBHHHHHHHC-------------CBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEE
T ss_pred EEEEEecCCCCcHHHHHhhc-------------ccchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEE
Confidence 89999999999999998432 3588999999999999999999852 2389999999999999
Q ss_pred cCCCcEEEcccCccccccc
Q 003368 794 DNNLTAHVGDFGLARLRQE 812 (825)
Q Consensus 794 ~~~~~~ki~DFGla~~~~~ 812 (825)
+.++.+||+|||+|+.+..
T Consensus 154 ~~~~~~kL~DFG~a~~~~~ 172 (336)
T 3g2f_A 154 KNDGTCVISDFGLSMRLTG 172 (336)
T ss_dssp CTTSCEEECCCTTCEECSS
T ss_pred cCCCcEEEeeccceeeccc
Confidence 9999999999999987654
No 189
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=99.91 E-value=5.2e-24 Score=229.02 Aligned_cols=151 Identities=25% Similarity=0.353 Sum_probs=133.3
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccch------hHHHHHHHHHHhhcCCCCCceeEeecccccccCC
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQG------ASKSFAAECRALRNIRHRNLVRVITSCSSIDFQG 716 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~------~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~ 716 (825)
+.|...+.||+|+||.||+|+...+|+.||||++...... ..+.+.+|++++++++||||+++++++. +
T Consensus 12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~ 86 (321)
T 2a2a_A 12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYE-----N 86 (321)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----C
T ss_pred ccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEe-----c
Confidence 5688899999999999999999889999999999764321 3567999999999999999999999853 4
Q ss_pred CCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCC
Q 003368 717 NDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNN 796 (825)
Q Consensus 717 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~ 796 (825)
....++||||+++|+|.+++... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.+
T Consensus 87 ~~~~~lv~e~~~~~~L~~~l~~~------------~~~~~~~~~~i~~qi~~aL~~lH~~---~ivH~dikp~NIl~~~~ 151 (321)
T 2a2a_A 87 RTDVVLILELVSGGELFDFLAQK------------ESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDK 151 (321)
T ss_dssp SSEEEEEECCCCSCBHHHHHHTC------------SCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCT
T ss_pred CCEEEEEEEcCCCCcHHHHHHhc------------CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChHHEEEecC
Confidence 66789999999999999998532 3578999999999999999999986 99999999999999988
Q ss_pred C----cEEEcccCcccccccC
Q 003368 797 L----TAHVGDFGLARLRQEV 813 (825)
Q Consensus 797 ~----~~ki~DFGla~~~~~~ 813 (825)
+ .+||+|||+++.....
T Consensus 152 ~~~~~~~kl~Dfg~~~~~~~~ 172 (321)
T 2a2a_A 152 NIPIPHIKLIDFGLAHEIEDG 172 (321)
T ss_dssp TSSSCCEEECCCTTCEECCTT
T ss_pred CCCcCCEEEccCccceecCcc
Confidence 7 7999999999987554
No 190
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=99.91 E-value=5.3e-24 Score=226.79 Aligned_cols=154 Identities=27% Similarity=0.476 Sum_probs=130.2
Q ss_pred ccccccceeccCCeeEEEEEE----EcCCCeEEEEEEeecccc-hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCC
Q 003368 643 DGFSSTHLIGIGSFGSVYKGT----FDRDGTIVAIKVLNLQLQ-GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGN 717 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~----~~~~g~~vAvK~~~~~~~-~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 717 (825)
..|+..+.||+|+||.||+|+ ...+|+.||||++..... ...+.+.+|++++++++||||+++++++.. .+.
T Consensus 21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---~~~ 97 (302)
T 4e5w_A 21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTE---DGG 97 (302)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC------
T ss_pred hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEec---CCC
Confidence 347888999999999999999 456889999999975432 345789999999999999999999998753 223
Q ss_pred CeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCC
Q 003368 718 DFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNL 797 (825)
Q Consensus 718 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~ 797 (825)
...++||||+++|+|.+++.. ....+++.++..++.|++.||+|||+. +|+||||||+||+++.++
T Consensus 98 ~~~~lv~e~~~~~~L~~~l~~-----------~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~ 163 (302)
T 4e5w_A 98 NGIKLIMEFLPSGSLKEYLPK-----------NKNKINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEH 163 (302)
T ss_dssp CCEEEEEECCTTCBHHHHHHH-----------HTTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETT
T ss_pred ceEEEEEEeCCCCcHHHHHHh-----------ccccCCHHHHHHHHHHHHHHHHHhhcC---CcccCCCchheEEEcCCC
Confidence 567999999999999999842 224589999999999999999999985 999999999999999999
Q ss_pred cEEEcccCcccccccC
Q 003368 798 TAHVGDFGLARLRQEV 813 (825)
Q Consensus 798 ~~ki~DFGla~~~~~~ 813 (825)
.+||+|||+|+.....
T Consensus 164 ~~kl~Dfg~~~~~~~~ 179 (302)
T 4e5w_A 164 QVKIGDFGLTKAIETD 179 (302)
T ss_dssp EEEECCCTTCEECCTT
T ss_pred CEEECcccccccccCC
Confidence 9999999999987654
No 191
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=99.91 E-value=2.1e-24 Score=232.64 Aligned_cols=151 Identities=27% Similarity=0.477 Sum_probs=125.0
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeE----EEEEEeeccc-chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCC
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTI----VAIKVLNLQL-QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGN 717 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~----vAvK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 717 (825)
++|+..+.||+|+||.||+|++..+|+. ||+|.+.... ....++|.+|++++++++|||||+++++|..
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~------ 88 (327)
T 3poz_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT------ 88 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEES------
T ss_pred HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEec------
Confidence 5688999999999999999998777765 4777775432 2345789999999999999999999999753
Q ss_pred CeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCC
Q 003368 718 DFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNL 797 (825)
Q Consensus 718 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~ 797 (825)
...++|+||+++|+|.+++... ...+++..+..|+.|+++||+|||+. +|+||||||+|||++.++
T Consensus 89 ~~~~~v~e~~~~g~L~~~l~~~-----------~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIll~~~~ 154 (327)
T 3poz_A 89 STVQLITQLMPFGCLLDYVREH-----------KDNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQ 154 (327)
T ss_dssp SSEEEEEECCTTCBHHHHHHHS-----------TTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETT
T ss_pred CCeEEEEEecCCCcHHHHHHhc-----------CCCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCChheEEECCCC
Confidence 3478999999999999998532 24689999999999999999999986 999999999999999999
Q ss_pred cEEEcccCcccccccC
Q 003368 798 TAHVGDFGLARLRQEV 813 (825)
Q Consensus 798 ~~ki~DFGla~~~~~~ 813 (825)
.+||+|||+|+.....
T Consensus 155 ~~kl~Dfg~a~~~~~~ 170 (327)
T 3poz_A 155 HVKITDFGLAKLLGAE 170 (327)
T ss_dssp EEEECCTTHHHHHTTT
T ss_pred CEEEccCcceeEccCC
Confidence 9999999999987554
No 192
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=99.91 E-value=4.8e-24 Score=240.10 Aligned_cols=150 Identities=29% Similarity=0.464 Sum_probs=130.7
Q ss_pred hcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCee
Q 003368 641 ATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFK 720 (825)
Q Consensus 641 ~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~ 720 (825)
..++|...+.||+|+||.||+|++ .|+.||||+++... ..+.|.+|++++++++|||||+++++|.. .....
T Consensus 191 ~~~~~~~~~~lG~G~fg~V~~~~~--~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~----~~~~~ 262 (450)
T 1k9a_A 191 NMKELKLLQTIGKGEFGDVMLGDY--RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVE----EKGGL 262 (450)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEE--TTEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEEC----TTSCE
T ss_pred ChHHeEEEeeecCcCCeeEEEEEe--cCCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEc----CCCce
Confidence 456788899999999999999998 47899999997643 45789999999999999999999998743 33468
Q ss_pred eEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcEE
Q 003368 721 ALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTAH 800 (825)
Q Consensus 721 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~k 800 (825)
++||||+++|+|.+++... ....+++..+..++.|+|+||+|||+. +|+||||||+|||+++++.+|
T Consensus 263 ~iv~e~~~~g~L~~~l~~~----------~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~k 329 (450)
T 1k9a_A 263 YIVTEYMAKGSLVDYLRSR----------GRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAK 329 (450)
T ss_dssp EEEEECCTTCBHHHHHHHH----------CTTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTSCEE
T ss_pred EEEEEecCCCcHHHHHHhc----------CCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEECCCCCEE
Confidence 9999999999999999532 122478999999999999999999986 899999999999999999999
Q ss_pred EcccCcccccc
Q 003368 801 VGDFGLARLRQ 811 (825)
Q Consensus 801 i~DFGla~~~~ 811 (825)
|+|||+|+...
T Consensus 330 l~DfG~a~~~~ 340 (450)
T 1k9a_A 330 VSDFGLTKEAS 340 (450)
T ss_dssp ECCCTTCEECC
T ss_pred EeeCCCccccc
Confidence 99999998654
No 193
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=99.91 E-value=2.5e-24 Score=234.09 Aligned_cols=164 Identities=26% Similarity=0.410 Sum_probs=131.2
Q ss_pred hcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccch-----hHHHHHHHHHHhhcCCCCCceeEeecccccccC
Q 003368 641 ATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQG-----ASKSFAAECRALRNIRHRNLVRVITSCSSIDFQ 715 (825)
Q Consensus 641 ~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~-----~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~ 715 (825)
..++|...+.||+|+||.||+|+...+|+.||||++...... ..+.+.+|++++++++||||+++++++.
T Consensus 8 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~----- 82 (346)
T 1ua2_A 8 RAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFG----- 82 (346)
T ss_dssp -----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEEC-----
T ss_pred HhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEe-----
Confidence 346799999999999999999999889999999999754221 1346889999999999999999999853
Q ss_pred CCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecC
Q 003368 716 GNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDN 795 (825)
Q Consensus 716 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~ 795 (825)
..+..++||||+++ +|.+++... ...+++.++..++.|+++||+|||+. +|+||||||+||+++.
T Consensus 83 ~~~~~~lv~e~~~~-~l~~~~~~~-----------~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~ 147 (346)
T 1ua2_A 83 HKSNISLVFDFMET-DLEVIIKDN-----------SLVLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDE 147 (346)
T ss_dssp CTTCCEEEEECCSE-EHHHHHTTC-----------CSSCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECT
T ss_pred eCCceEEEEEcCCC-CHHHHHHhc-----------CcCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCHHHEEEcC
Confidence 45678999999986 888888532 23577888999999999999999986 8999999999999999
Q ss_pred CCcEEEcccCcccccccCCCCCccccccC
Q 003368 796 NLTAHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 796 ~~~~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
++.+||+|||+|+............+||+
T Consensus 148 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~ 176 (346)
T 1ua2_A 148 NGVLKLADFGLAKSFGSPNRAYTHQVVTR 176 (346)
T ss_dssp TCCEEECCCGGGSTTTSCCCCCCCSCCCC
T ss_pred CCCEEEEecccceeccCCcccCCcccccc
Confidence 99999999999998765444444455554
No 194
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.91 E-value=6e-24 Score=227.14 Aligned_cols=169 Identities=28% Similarity=0.428 Sum_probs=133.7
Q ss_pred hcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc-----hhHHHHHHHHHHhhcCC---CCCceeEeeccccc
Q 003368 641 ATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ-----GASKSFAAECRALRNIR---HRNLVRVITSCSSI 712 (825)
Q Consensus 641 ~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~-----~~~~~~~~E~~~l~~l~---H~niv~l~~~~~~~ 712 (825)
..++|+..+.||+|+||+||+|++..+|+.||||++..... .....+.+|++++++++ ||||++++++|...
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~ 86 (308)
T 3g33_A 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS 86 (308)
T ss_dssp ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence 35689999999999999999999988999999999975321 12346778888777765 99999999997643
Q ss_pred ccCCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCee
Q 003368 713 DFQGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNIL 792 (825)
Q Consensus 713 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NIL 792 (825)
........++||||+. |+|.+++... ....+++.++..|+.|+++||+|||+. +|+||||||+||+
T Consensus 87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~----------~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil 152 (308)
T 3g33_A 87 RTDREIKVTLVFEHVD-QDLRTYLDKA----------PPPGLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENIL 152 (308)
T ss_dssp CSSSEEEEEEEEECCC-CBHHHHHHTC----------CTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCTTTEE
T ss_pred CCCCceeEEEEehhhh-cCHHHHHhhc----------cCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEE
Confidence 2222235799999997 5999998543 113489999999999999999999996 8999999999999
Q ss_pred ecCCCcEEEcccCcccccccCCCCCccccccC
Q 003368 793 LDNNLTAHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 793 l~~~~~~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
++.++.+||+|||+|+...... .....+||+
T Consensus 153 ~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~gt~ 183 (308)
T 3g33_A 153 VTSGGTVKLADFGLARIYSYQM-ALTPVVVTL 183 (308)
T ss_dssp ECTTSCEEECSCSCTTTSTTCC-CSGGGGCCC
T ss_pred EcCCCCEEEeeCccccccCCCc-ccCCccccc
Confidence 9999999999999999765432 234445554
No 195
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=99.91 E-value=7e-24 Score=223.67 Aligned_cols=151 Identities=27% Similarity=0.460 Sum_probs=129.7
Q ss_pred hcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCee
Q 003368 641 ATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFK 720 (825)
Q Consensus 641 ~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~ 720 (825)
..++|...+.||+|+||.||+|++ .++..||||++..... ..+++.+|++++++++||||++++++|. .....
T Consensus 22 ~~~~y~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~~~~~ 94 (283)
T 3gen_A 22 DPKDLTFLKELGTGQFGVVKYGKW-RGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCT-----KQRPI 94 (283)
T ss_dssp CGGGEEEEEECC---CEEEEEEEE-TTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEEC-----SSSSE
T ss_pred CHHHHHhHhhcCCCCCceEEEEEE-cCCCeEEEEEecCCCC-CHHHHHHHHHHHhcCCCCCEeeEEEEEe-----cCCCe
Confidence 456788999999999999999998 5788999999976533 3467999999999999999999999853 45678
Q ss_pred eEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcEE
Q 003368 721 ALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTAH 800 (825)
Q Consensus 721 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~k 800 (825)
++||||+++|+|.+++... ...+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+|
T Consensus 95 ~lv~e~~~~~~L~~~l~~~-----------~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nili~~~~~~k 160 (283)
T 3gen_A 95 FIITEYMANGCLLNYLREM-----------RHRFQTQQLLEMCKDVCEAMEYLESK---QFLHRDLAARNCLVNDQGVVK 160 (283)
T ss_dssp EEEECCCTTCBHHHHHHCG-----------GGCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTSCEE
T ss_pred EEEEeccCCCcHHHHHHHh-----------ccCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCccceEEEcCCCCEE
Confidence 9999999999999998531 24689999999999999999999985 999999999999999999999
Q ss_pred EcccCccccccc
Q 003368 801 VGDFGLARLRQE 812 (825)
Q Consensus 801 i~DFGla~~~~~ 812 (825)
|+|||+++....
T Consensus 161 l~Dfg~~~~~~~ 172 (283)
T 3gen_A 161 VSDFGLSRYVLD 172 (283)
T ss_dssp ECSTTGGGGBCC
T ss_pred Eccccccccccc
Confidence 999999987643
No 196
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=99.90 E-value=7.7e-24 Score=225.72 Aligned_cols=160 Identities=27% Similarity=0.436 Sum_probs=137.7
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc-chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCeee
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL-QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFKA 721 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~~ 721 (825)
+.|...+.||+|+||.||+|+...+|+.||||++.... ....+.+.+|++++++++||||+++++++.. ....+
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~~ 96 (303)
T 3a7i_A 22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLK-----DTKLW 96 (303)
T ss_dssp GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----TTEEE
T ss_pred HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEec-----CCeEE
Confidence 45888999999999999999998899999999997653 3345789999999999999999999998643 56789
Q ss_pred EEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcEEE
Q 003368 722 LVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTAHV 801 (825)
Q Consensus 722 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ki 801 (825)
+||||+++|+|.+++.. ..+++.++..++.|+++||+|||+. +|+||||||+||+++.++.+||
T Consensus 97 lv~e~~~~~~L~~~~~~-------------~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl 160 (303)
T 3a7i_A 97 IIMEYLGGGSALDLLEP-------------GPLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKL 160 (303)
T ss_dssp EEEECCTTEEHHHHHTT-------------SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEE
T ss_pred EEEEeCCCCcHHHHHhc-------------CCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChheEEECCCCCEEE
Confidence 99999999999999842 2588999999999999999999986 9999999999999999999999
Q ss_pred cccCcccccccCCCCCcccccc
Q 003368 802 GDFGLARLRQEVPNNQSSSVGD 823 (825)
Q Consensus 802 ~DFGla~~~~~~~~~~~~~~gt 823 (825)
+|||+++.............||
T Consensus 161 ~Dfg~~~~~~~~~~~~~~~~~~ 182 (303)
T 3a7i_A 161 ADFGVAGQLTDTQIKRNTFVGT 182 (303)
T ss_dssp CCCTTCEECBTTBCCBCCCCSC
T ss_pred eecccceecCccccccCccCCC
Confidence 9999998876543333334444
No 197
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=99.90 E-value=5e-24 Score=231.43 Aligned_cols=150 Identities=31% Similarity=0.415 Sum_probs=130.6
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc---hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCe
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ---GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDF 719 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~---~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~ 719 (825)
+.|...+.||+|+||.||+|+...+|+.||||++..... ...+.+.+|++++++++|||||+++++|.. ++.
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-----~~~ 128 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLR-----EHT 128 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----TTE
T ss_pred hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEE-----CCe
Confidence 458888999999999999999988999999999975432 234678999999999999999999998643 567
Q ss_pred eeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcE
Q 003368 720 KALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTA 799 (825)
Q Consensus 720 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ 799 (825)
.++||||++ |++.+++.. ....+++.++..++.|+++||+|||+. +|+||||||+|||++.++.+
T Consensus 129 ~~lv~e~~~-g~l~~~l~~-----------~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~ 193 (348)
T 1u5q_A 129 AWLVMEYCL-GSASDLLEV-----------HKKPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLV 193 (348)
T ss_dssp EEEEEECCS-EEHHHHHHH-----------HTSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEE
T ss_pred EEEEEecCC-CCHHHHHHH-----------hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCE
Confidence 899999997 688887731 224689999999999999999999996 89999999999999999999
Q ss_pred EEcccCccccccc
Q 003368 800 HVGDFGLARLRQE 812 (825)
Q Consensus 800 ki~DFGla~~~~~ 812 (825)
||+|||+|+....
T Consensus 194 kL~DfG~a~~~~~ 206 (348)
T 1u5q_A 194 KLGDFGSASIMAP 206 (348)
T ss_dssp EECCCTTCBSSSS
T ss_pred EEeeccCceecCC
Confidence 9999999987654
No 198
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=99.90 E-value=6.5e-24 Score=226.70 Aligned_cols=150 Identities=33% Similarity=0.483 Sum_probs=124.3
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCeeeE
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFKAL 722 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~~l 722 (825)
++|+..+.||+|+||+||+|++ .++.||||++... ...+.|.+|++++++++||||++++++|. +..++
T Consensus 8 ~~~~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-------~~~~l 76 (307)
T 2eva_A 8 KEIEVEEVVGRGAFGVVCKAKW--RAKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGACL-------NPVCL 76 (307)
T ss_dssp GGEEEEEEEECCSSSEEEEEEE--TTEEEEEEECSST--THHHHHHHHHHHHHHCCCTTBCCEEEBCT-------TTTEE
T ss_pred hHeeeeeEeecCCCceEEEEEE--CCeeEEEEEecCh--hHHHHHHHHHHHHhcCCCCCcCeEEEEEc-------CCcEE
Confidence 5688899999999999999998 4789999998643 34578999999999999999999999863 23689
Q ss_pred EEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc-EEE
Q 003368 723 VYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT-AHV 801 (825)
Q Consensus 723 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~-~ki 801 (825)
||||+++|+|.+++... .....+++..+..++.|+++||+|||+....+|+||||||+||+++.++. +||
T Consensus 77 v~e~~~~~~L~~~l~~~---------~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl 147 (307)
T 2eva_A 77 VMEYAEGGSLYNVLHGA---------EPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKI 147 (307)
T ss_dssp EEECCTTCBHHHHHHCS---------SSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEE
T ss_pred EEEcCCCCCHHHHHhcc---------CCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEE
Confidence 99999999999999643 12235788999999999999999999854458999999999999998886 799
Q ss_pred cccCccccccc
Q 003368 802 GDFGLARLRQE 812 (825)
Q Consensus 802 ~DFGla~~~~~ 812 (825)
+|||+|+....
T Consensus 148 ~Dfg~~~~~~~ 158 (307)
T 2eva_A 148 CDFGTACDIQT 158 (307)
T ss_dssp CCCCC------
T ss_pred ccccccccccc
Confidence 99999986543
No 199
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=99.90 E-value=4.7e-24 Score=224.00 Aligned_cols=151 Identities=26% Similarity=0.460 Sum_probs=118.7
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc---chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL---QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGND 718 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~---~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~ 718 (825)
.++|+..+.||+|+||.||+|++..+|+.||||++.... ....+.+.+|++++++++||||+++++++. ..+
T Consensus 12 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~ 86 (275)
T 2eue_A 12 IGNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIK-----SKD 86 (275)
T ss_dssp CCCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEE-----CSS
T ss_pred ccceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEe-----cCC
Confidence 357999999999999999999998899999999997543 233567899999999999999999999854 356
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..++||||+ +|++.+++... ..+++.++..++.|++.|++|||+. +|+||||||+||++++++.
T Consensus 87 ~~~lv~e~~-~~~l~~~~~~~------------~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dikp~Nil~~~~~~ 150 (275)
T 2eue_A 87 EIIMVIEYA-GNELFDYIVQR------------DKMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLN 150 (275)
T ss_dssp CEEEEEECC-CEEHHHHHHTS------------SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSC
T ss_pred eEEEEehhc-CCcHHHHHHhc------------CCCCHHHHHHHHHHHHHHHHHHHHC---CCeeccCChHhEEECCCCC
Confidence 789999999 77888887432 3589999999999999999999986 8999999999999999999
Q ss_pred EEEcccCcccccccC
Q 003368 799 AHVGDFGLARLRQEV 813 (825)
Q Consensus 799 ~ki~DFGla~~~~~~ 813 (825)
+||+|||+|+.....
T Consensus 151 ~kl~Dfg~~~~~~~~ 165 (275)
T 2eue_A 151 VKIADFGLSNIMTDG 165 (275)
T ss_dssp EEECCSSCC------
T ss_pred EEEeecccceeccCc
Confidence 999999999876543
No 200
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=99.90 E-value=2.7e-24 Score=232.01 Aligned_cols=163 Identities=25% Similarity=0.437 Sum_probs=127.1
Q ss_pred hhcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc--hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCC
Q 003368 640 KATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ--GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGN 717 (825)
Q Consensus 640 ~~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~--~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 717 (825)
...++|...+.||+|+||+||+|+...+|+.||||+++.... ...+.+.+|++++++++|||||++++++. .+
T Consensus 31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~ 105 (329)
T 3gbz_A 31 TSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIH-----HN 105 (329)
T ss_dssp -CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEE-----ET
T ss_pred cchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEe-----cC
Confidence 345789999999999999999999989999999999975532 22456789999999999999999999854 46
Q ss_pred CeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeee----
Q 003368 718 DFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILL---- 793 (825)
Q Consensus 718 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl---- 793 (825)
+..++||||++ |+|.+++... ..+++.++..|+.|++.||+|||+. +|+||||||+|||+
T Consensus 106 ~~~~lv~e~~~-~~L~~~~~~~------------~~~~~~~~~~i~~ql~~~l~~LH~~---~ivH~Dlkp~NIll~~~~ 169 (329)
T 3gbz_A 106 HRLHLIFEYAE-NDLKKYMDKN------------PDVSMRVIKSFLYQLINGVNFCHSR---RCLHRDLKPQNLLLSVSD 169 (329)
T ss_dssp TEEEEEEECCS-EEHHHHHHHC------------TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEC--
T ss_pred CEEEEEEecCC-CCHHHHHhhc------------CCCCHHHHHHHHHHHHHHHHHHHhC---CEECCCCCHHHEEEecCC
Confidence 78899999998 5999988432 3588999999999999999999986 99999999999999
Q ss_pred -cCCCcEEEcccCcccccccCCCCCcccccc
Q 003368 794 -DNNLTAHVGDFGLARLRQEVPNNQSSSVGD 823 (825)
Q Consensus 794 -~~~~~~ki~DFGla~~~~~~~~~~~~~~gt 823 (825)
+.++.+||+|||+|+............+||
T Consensus 170 ~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t 200 (329)
T 3gbz_A 170 ASETPVLKIGDFGLARAFGIPIRQFTHEIIT 200 (329)
T ss_dssp ---CCEEEECCTTHHHHHC-----------C
T ss_pred CCccceEEECcCCCccccCCcccccCCCcCC
Confidence 455569999999998765443333333444
No 201
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=99.90 E-value=3.9e-24 Score=232.52 Aligned_cols=165 Identities=24% Similarity=0.296 Sum_probs=133.0
Q ss_pred hhcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc-----chhHHHHHHHHHHhhcCCCCCceeEeeccccccc
Q 003368 640 KATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL-----QGASKSFAAECRALRNIRHRNLVRVITSCSSIDF 714 (825)
Q Consensus 640 ~~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~-----~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~ 714 (825)
...++|...+.||+|+||.||+|+...+++.||||++.... ....+.+.+|++++++++|||||+++++|.
T Consensus 23 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~---- 98 (345)
T 3hko_A 23 ELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYE---- 98 (345)
T ss_dssp HHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEE----
T ss_pred hhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhc----
Confidence 34567899999999999999999999999999999987542 234578999999999999999999999853
Q ss_pred CCCCeeeEEEEccCCCChhhhccCCCCCCCc----------------------------ccchhcccCCHHHHHHHHHHH
Q 003368 715 QGNDFKALVYQYMPNGSLENWLHPDAIPQTD----------------------------EENDEIRNLTLLERISIAIDV 766 (825)
Q Consensus 715 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~----------------------------~~~~~~~~l~~~~~~~i~~~v 766 (825)
+.+..++||||+++|+|.+++......... ........+++..+..|+.|+
T Consensus 99 -~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi 177 (345)
T 3hko_A 99 -DEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQI 177 (345)
T ss_dssp -CSSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHH
T ss_pred -cCCeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHH
Confidence 467889999999999999998521000000 000012234677788999999
Q ss_pred HHHHHHHHhcCCCCeeecCCCCCCeeecCCC--cEEEcccCccccccc
Q 003368 767 ASAVDYLHHHCQEPTIHCDLKPSNILLDNNL--TAHVGDFGLARLRQE 812 (825)
Q Consensus 767 a~~l~yLH~~~~~~ivHrdlk~~NILl~~~~--~~ki~DFGla~~~~~ 812 (825)
++||+|||+. +|+||||||+||+++.++ .+||+|||+|+....
T Consensus 178 ~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~ 222 (345)
T 3hko_A 178 FSALHYLHNQ---GICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYK 222 (345)
T ss_dssp HHHHHHHHHT---TEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGG
T ss_pred HHHHHHHHHC---CccccCCChhhEEEecCCCceEEEeeccccccccc
Confidence 9999999986 899999999999998766 899999999997654
No 202
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=99.90 E-value=6.8e-24 Score=224.26 Aligned_cols=152 Identities=28% Similarity=0.476 Sum_probs=128.6
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchh-------HHHHHHHHHHhhcCCCCCceeEeeccccccc
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGA-------SKSFAAECRALRNIRHRNLVRVITSCSSIDF 714 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~-------~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~ 714 (825)
.++|...+.||+|+||.||+|++..+++.||||++....... .+.+.+|++++++++||||+++++++..
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~--- 94 (287)
T 4f0f_A 18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHN--- 94 (287)
T ss_dssp STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETT---
T ss_pred hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecC---
Confidence 357888999999999999999998899999999986543211 1678999999999999999999998532
Q ss_pred CCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeec
Q 003368 715 QGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLD 794 (825)
Q Consensus 715 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~ 794 (825)
. .++||||+++|+|.+++... ...+++..+..++.|++.|++|||+. .++|+||||||+||+++
T Consensus 95 --~--~~lv~e~~~~~~L~~~l~~~-----------~~~~~~~~~~~~~~~l~~~l~~lH~~-~~~ivH~dikp~Nil~~ 158 (287)
T 4f0f_A 95 --P--PRMVMEFVPCGDLYHRLLDK-----------AHPIKWSVKLRLMLDIALGIEYMQNQ-NPPIVHRDLRSPNIFLQ 158 (287)
T ss_dssp --T--TEEEEECCTTCBHHHHHHCT-----------TSCCCHHHHHHHHHHHHHHHHHHHTS-SSCCBCSCCSGGGEEES
T ss_pred --C--CeEEEEecCCCCHHHHHhcc-----------cCCccHHHHHHHHHHHHHHHHHHHhC-CCCeecCCCCcceEEEe
Confidence 2 37999999999999888532 24689999999999999999999986 12399999999999998
Q ss_pred CCCc-----EEEcccCccccccc
Q 003368 795 NNLT-----AHVGDFGLARLRQE 812 (825)
Q Consensus 795 ~~~~-----~ki~DFGla~~~~~ 812 (825)
.++. +||+|||+|+....
T Consensus 159 ~~~~~~~~~~kl~Dfg~~~~~~~ 181 (287)
T 4f0f_A 159 SLDENAPVCAKVADFGLSQQSVH 181 (287)
T ss_dssp CCCTTCSCCEEECCCTTCBCCSS
T ss_pred ccCCCCceeEEeCCCCccccccc
Confidence 8776 99999999986543
No 203
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=99.90 E-value=1.8e-24 Score=227.66 Aligned_cols=161 Identities=26% Similarity=0.414 Sum_probs=132.9
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc--chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCe
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL--QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDF 719 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~ 719 (825)
.++|+..+.||+|+||.||+|+...+|+.||||++.... ....+.+.+|++++++++||||+++++++.. .....
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~---~~~~~ 81 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIID---RTNTT 81 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE---GGGTE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEec---CCCce
Confidence 467889999999999999999998899999999997543 2345679999999999999999999998643 23457
Q ss_pred eeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcC--CCCeeecCCCCCCeeecCCC
Q 003368 720 KALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHC--QEPTIHCDLKPSNILLDNNL 797 (825)
Q Consensus 720 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~--~~~ivHrdlk~~NILl~~~~ 797 (825)
.++||||+++|+|.+++... ......+++..+..++.|+++||+|||+.. ..+|+||||||+||+++.++
T Consensus 82 ~~lv~e~~~~~~L~~~l~~~--------~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~ 153 (279)
T 2w5a_A 82 LYIVMEYCEGGDLASVITKG--------TKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQ 153 (279)
T ss_dssp EEEEEECCTTEEHHHHHHHH--------HHTTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSS
T ss_pred EEEEEeCCCCCCHHHHHHhh--------cccCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCC
Confidence 89999999999999998521 112235899999999999999999999862 11299999999999999999
Q ss_pred cEEEcccCcccccccC
Q 003368 798 TAHVGDFGLARLRQEV 813 (825)
Q Consensus 798 ~~ki~DFGla~~~~~~ 813 (825)
.+||+|||+++.....
T Consensus 154 ~~kl~dfg~~~~~~~~ 169 (279)
T 2w5a_A 154 NVKLGDFGLARILNHD 169 (279)
T ss_dssp CEEECCCCHHHHC---
T ss_pred CEEEecCchheeeccc
Confidence 9999999999876543
No 204
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=99.90 E-value=1.7e-24 Score=233.10 Aligned_cols=161 Identities=23% Similarity=0.406 Sum_probs=127.1
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccch-hHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCeee
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQG-ASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFKA 721 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~-~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~~ 721 (825)
++|...+.||+|+||.||+|+...+|+.||||++...... ....+.+|++++++++||||+++++++. .++..+
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~~~~~ 76 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIH-----TEKSLT 76 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEE-----CSSCEE
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEe-----eCCEEE
Confidence 5688899999999999999999889999999999754322 1224568999999999999999999853 456789
Q ss_pred EEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcEEE
Q 003368 722 LVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTAHV 801 (825)
Q Consensus 722 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ki 801 (825)
+||||++ |+|.+++... ...+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||
T Consensus 77 lv~e~~~-~~l~~~~~~~-----------~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl 141 (324)
T 3mtl_A 77 LVFEYLD-KDLKQYLDDC-----------GNIINMHNVKLFLFQLLRGLAYCHRQ---KVLHRDLKPQNLLINERGELKL 141 (324)
T ss_dssp EEEECCS-EEHHHHHHHT-----------TTCCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCCGGGEEECTTCCEEE
T ss_pred EEecccc-cCHHHHHHhc-----------CCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCcCHHHEEECCCCCEEE
Confidence 9999997 5898888422 23588999999999999999999986 9999999999999999999999
Q ss_pred cccCcccccccCCCCCcccccc
Q 003368 802 GDFGLARLRQEVPNNQSSSVGD 823 (825)
Q Consensus 802 ~DFGla~~~~~~~~~~~~~~gt 823 (825)
+|||+|+............+||
T Consensus 142 ~Dfg~a~~~~~~~~~~~~~~~t 163 (324)
T 3mtl_A 142 ADFGLARAKSIPTKTYDNEVVT 163 (324)
T ss_dssp CSSSEEECC------------C
T ss_pred ccCcccccccCCccccccccCc
Confidence 9999998765443333333444
No 205
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=99.90 E-value=1e-23 Score=230.80 Aligned_cols=164 Identities=27% Similarity=0.422 Sum_probs=138.0
Q ss_pred hhcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc--------hhHHHHHHHHHHhhcC-CCCCceeEeeccc
Q 003368 640 KATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ--------GASKSFAAECRALRNI-RHRNLVRVITSCS 710 (825)
Q Consensus 640 ~~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~--------~~~~~~~~E~~~l~~l-~H~niv~l~~~~~ 710 (825)
...++|...+.||+|+||+||+|++..+|+.||||+++.... ...+.+.+|+++++++ +||||+++++++.
T Consensus 91 ~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~ 170 (365)
T 2y7j_A 91 EFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYE 170 (365)
T ss_dssp HHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred hhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEe
Confidence 334678999999999999999999988999999999875431 1245688999999999 7999999999853
Q ss_pred ccccCCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCC
Q 003368 711 SIDFQGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSN 790 (825)
Q Consensus 711 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~N 790 (825)
.....++||||+++|+|.+++. ....+++..+..++.|+++||+|||+. +|+||||||+|
T Consensus 171 -----~~~~~~lv~e~~~g~~L~~~l~------------~~~~l~~~~~~~i~~qi~~~L~~LH~~---gi~H~Dlkp~N 230 (365)
T 2y7j_A 171 -----SSSFMFLVFDLMRKGELFDYLT------------EKVALSEKETRSIMRSLLEAVSFLHAN---NIVHRDLKPEN 230 (365)
T ss_dssp -----BSSEEEEEECCCTTCBHHHHHH------------HHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGG
T ss_pred -----eCCEEEEEEEeCCCCcHHHHHH------------hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHH
Confidence 3678899999999999999984 224689999999999999999999986 99999999999
Q ss_pred eeecCCCcEEEcccCcccccccCCCCCccccccC
Q 003368 791 ILLDNNLTAHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 791 ILl~~~~~~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
|+++.++.+||+|||+++...... .....+||+
T Consensus 231 Il~~~~~~ikl~DfG~~~~~~~~~-~~~~~~gt~ 263 (365)
T 2y7j_A 231 ILLDDNMQIRLSDFGFSCHLEPGE-KLRELCGTP 263 (365)
T ss_dssp EEECTTCCEEECCCTTCEECCTTC-CBCCCCSCG
T ss_pred EEECCCCCEEEEecCcccccCCCc-ccccCCCCC
Confidence 999999999999999998775532 223345553
No 206
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=99.90 E-value=3.1e-24 Score=231.17 Aligned_cols=151 Identities=27% Similarity=0.446 Sum_probs=128.8
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeE----EEEEEeeccc-chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCC
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTI----VAIKVLNLQL-QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGN 717 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~----vAvK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 717 (825)
++|...+.||+|+||+||+|++..+|+. ||+|.+.... ....+.+.+|+.++++++||||++++++|. +
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~------~ 86 (325)
T 3kex_A 13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP------G 86 (325)
T ss_dssp TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC------B
T ss_pred hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc------C
Confidence 4688899999999999999999877765 7777765432 223356788999999999999999999863 3
Q ss_pred CeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCC
Q 003368 718 DFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNL 797 (825)
Q Consensus 718 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~ 797 (825)
+..++||||+++|+|.+++... ...+++..+..++.|+++||+|||+. +|+||||||+|||++.++
T Consensus 87 ~~~~~v~e~~~~~~L~~~l~~~-----------~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~ 152 (325)
T 3kex_A 87 SSLQLVTQYLPLGSLLDHVRQH-----------RGALGPQLLLNWGVQIAKGMYYLEEH---GMVHRNLAARNVLLKSPS 152 (325)
T ss_dssp SSEEEEEECCTTCBSHHHHHSS-----------GGGSCTTHHHHHHHHHHHHHHHHHHT---TCCCSCCSSTTEEESSSS
T ss_pred CccEEEEEeCCCCCHHHHHHHc-----------cccCCHHHHHHHHHHHHHHHHHHHhC---CCCCCccchheEEECCCC
Confidence 4578999999999999998532 24688889999999999999999986 899999999999999999
Q ss_pred cEEEcccCcccccccC
Q 003368 798 TAHVGDFGLARLRQEV 813 (825)
Q Consensus 798 ~~ki~DFGla~~~~~~ 813 (825)
.+||+|||+|+.....
T Consensus 153 ~~kl~Dfg~a~~~~~~ 168 (325)
T 3kex_A 153 QVQVADFGVADLLPPD 168 (325)
T ss_dssp CEEECSCSGGGGSCCC
T ss_pred eEEECCCCcccccCcc
Confidence 9999999999987554
No 207
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=99.90 E-value=8.8e-24 Score=226.41 Aligned_cols=165 Identities=26% Similarity=0.409 Sum_probs=134.0
Q ss_pred hcccccccceeccCCeeEEEEEEE-----cCCCeEEEEEEeecccc-hhHHHHHHHHHHhhcCCCCCceeEeeccccccc
Q 003368 641 ATDGFSSTHLIGIGSFGSVYKGTF-----DRDGTIVAIKVLNLQLQ-GASKSFAAECRALRNIRHRNLVRVITSCSSIDF 714 (825)
Q Consensus 641 ~~~~f~~~~~ig~G~~g~Vy~~~~-----~~~g~~vAvK~~~~~~~-~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~ 714 (825)
..++|...+.||+|+||.||+|+. +.+++.||||++..... ...+.+.+|++++++++||||+++++++.
T Consensus 21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~---- 96 (314)
T 2ivs_A 21 PRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACS---- 96 (314)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC----
T ss_pred chhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEe----
Confidence 346788899999999999999987 34568999999976432 34567899999999999999999999853
Q ss_pred CCCCeeeEEEEccCCCChhhhccCCCCCCC------------cccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCee
Q 003368 715 QGNDFKALVYQYMPNGSLENWLHPDAIPQT------------DEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTI 782 (825)
Q Consensus 715 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~------------~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~iv 782 (825)
..+..++||||+++|+|.+++........ .........+++.++..++.|+++||+|||+. +|+
T Consensus 97 -~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~iv 172 (314)
T 2ivs_A 97 -QDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM---KLV 172 (314)
T ss_dssp -SSSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHT---TEE
T ss_pred -cCCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHC---CCc
Confidence 35678999999999999999964321000 00001124589999999999999999999986 899
Q ss_pred ecCCCCCCeeecCCCcEEEcccCcccccccC
Q 003368 783 HCDLKPSNILLDNNLTAHVGDFGLARLRQEV 813 (825)
Q Consensus 783 Hrdlk~~NILl~~~~~~ki~DFGla~~~~~~ 813 (825)
||||||+||++++++.+||+|||+++.....
T Consensus 173 H~dikp~NIli~~~~~~kl~Dfg~~~~~~~~ 203 (314)
T 2ivs_A 173 HRDLAARNILVAEGRKMKISDFGLSRDVYEE 203 (314)
T ss_dssp CCCCSGGGEEEETTTEEEECCCTTCEECTTT
T ss_pred ccccchheEEEcCCCCEEEcccccccccccc
Confidence 9999999999999999999999999876543
No 208
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=99.90 E-value=4.7e-24 Score=235.81 Aligned_cols=150 Identities=26% Similarity=0.426 Sum_probs=122.5
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc--chhHHHHHHHHHHhhcCC-CCCceeEeecccccccCCCC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL--QGASKSFAAECRALRNIR-HRNLVRVITSCSSIDFQGND 718 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~--~~~~~~~~~E~~~l~~l~-H~niv~l~~~~~~~~~~~~~ 718 (825)
.++|+..+.||+|+||.||+|++..+|+.||||++.... ....+.+.+|+.++++++ |||||++++++.. .+..
T Consensus 8 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~---~~~~ 84 (388)
T 3oz6_A 8 LRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRA---DNDR 84 (388)
T ss_dssp HTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEEC---TTSS
T ss_pred cCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEec---CCCC
Confidence 467999999999999999999999999999999986542 234567889999999998 9999999998643 2334
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..|+|||||+ |+|.+++.. ..+++..+..++.|+++||+|||+. +|+||||||+|||++.++.
T Consensus 85 ~~~lv~e~~~-~~L~~~~~~-------------~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~ 147 (388)
T 3oz6_A 85 DVYLVFDYME-TDLHAVIRA-------------NILEPVHKQYVVYQLIKVIKYLHSG---GLLHRDMKPSNILLNAECH 147 (388)
T ss_dssp CEEEEEECCS-EEHHHHHHH-------------TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCC
T ss_pred EEEEEecccC-cCHHHHHHc-------------CCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHeEEcCCCC
Confidence 6899999998 589888742 3588899999999999999999986 9999999999999999999
Q ss_pred EEEcccCcccccc
Q 003368 799 AHVGDFGLARLRQ 811 (825)
Q Consensus 799 ~ki~DFGla~~~~ 811 (825)
+||+|||+|+...
T Consensus 148 ~kl~DFG~a~~~~ 160 (388)
T 3oz6_A 148 VKVADFGLSRSFV 160 (388)
T ss_dssp EEECCCTTCEESS
T ss_pred EEecCCccccccc
Confidence 9999999998764
No 209
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=99.90 E-value=1.2e-23 Score=220.90 Aligned_cols=150 Identities=23% Similarity=0.382 Sum_probs=133.2
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc-chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCeee
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL-QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFKA 721 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~~ 721 (825)
++|+..+.||+|+||.||+|+...+|+.||||++.... ....+.+.+|+++++.++||||+++++++. .++..+
T Consensus 7 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~~~ 81 (276)
T 2yex_A 7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRR-----EGNIQY 81 (276)
T ss_dssp HHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEE-----ETTEEE
T ss_pred cceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEE-----cCCEEE
Confidence 56889999999999999999998899999999997543 234578899999999999999999999854 356789
Q ss_pred EEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcEEE
Q 003368 722 LVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTAHV 801 (825)
Q Consensus 722 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ki 801 (825)
+||||+++|+|.+++... ..+++.++..++.|+++||+|||+. +|+||||||+||+++.++.+||
T Consensus 82 lv~e~~~~~~L~~~l~~~------------~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl 146 (276)
T 2yex_A 82 LFLEYCSGGELFDRIEPD------------IGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKI 146 (276)
T ss_dssp EEEECCTTEEGGGGSBTT------------TBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEE
T ss_pred EEEEecCCCcHHHHHhhc------------cCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCChHHEEEccCCCEEE
Confidence 999999999999998532 3588999999999999999999985 9999999999999999999999
Q ss_pred cccCccccccc
Q 003368 802 GDFGLARLRQE 812 (825)
Q Consensus 802 ~DFGla~~~~~ 812 (825)
+|||+++....
T Consensus 147 ~dfg~~~~~~~ 157 (276)
T 2yex_A 147 SDFGLATVFRY 157 (276)
T ss_dssp CCCTTCEECEE
T ss_pred eeCCCccccCC
Confidence 99999987643
No 210
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=99.90 E-value=5.4e-24 Score=232.85 Aligned_cols=163 Identities=23% Similarity=0.360 Sum_probs=137.8
Q ss_pred cccccHHHHHhhcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCC-----CCCcee
Q 003368 630 LRKVSYESLLKATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIR-----HRNLVR 704 (825)
Q Consensus 630 ~~~~~~~~~~~~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~-----H~niv~ 704 (825)
...+++.+.....++|...+.||+|+||+||+|++..+++.||||+++.. ....+.+..|++++++++ |||||+
T Consensus 22 ~~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~h~~iv~ 100 (360)
T 3llt_A 22 IVHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-KKYTRSAKIEADILKKIQNDDINNNNIVK 100 (360)
T ss_dssp GGSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-HHHHHHHHHHHHHHHHTCCCSTTGGGBCC
T ss_pred ceeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc-hhhhhhhHHHHHHHHHhcccCCCCCCeec
Confidence 34455555555678899999999999999999999889999999999743 334567788999999986 999999
Q ss_pred EeecccccccCCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeec
Q 003368 705 VITSCSSIDFQGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHC 784 (825)
Q Consensus 705 l~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHr 784 (825)
+++++. ..+..++||||+ +|+|.+++... ....+++.++..++.|++.||+|||+. +|+||
T Consensus 101 ~~~~~~-----~~~~~~lv~e~~-~~~L~~~~~~~----------~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHr 161 (360)
T 3llt_A 101 YHGKFM-----YYDHMCLIFEPL-GPSLYEIITRN----------NYNGFHIEDIKLYCIEILKALNYLRKM---SLTHT 161 (360)
T ss_dssp EEEEEE-----ETTEEEEEECCC-CCBHHHHHHHT----------TTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred ccceee-----ECCeeEEEEcCC-CCCHHHHHHhc----------CCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeC
Confidence 999864 356789999999 99999998532 123588999999999999999999985 99999
Q ss_pred CCCCCCeeecC-------------------------CCcEEEcccCccccccc
Q 003368 785 DLKPSNILLDN-------------------------NLTAHVGDFGLARLRQE 812 (825)
Q Consensus 785 dlk~~NILl~~-------------------------~~~~ki~DFGla~~~~~ 812 (825)
||||+|||++. ++.+||+|||+|+....
T Consensus 162 Dlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~ 214 (360)
T 3llt_A 162 DLKPENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSD 214 (360)
T ss_dssp CCSGGGEEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTS
T ss_pred CCCcccEEEccccccccccchhcccccccccccccCCCCEEEEeccCceecCC
Confidence 99999999975 78999999999997544
No 211
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=99.90 E-value=1.6e-23 Score=221.72 Aligned_cols=155 Identities=29% Similarity=0.435 Sum_probs=131.9
Q ss_pred cccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc--chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCeee
Q 003368 644 GFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL--QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFKA 721 (825)
Q Consensus 644 ~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~~ 721 (825)
.|...+.||+|+||.||+|+...++..||+|.+.... ....+.+.+|++++++++||||+++++++... ..+....+
T Consensus 27 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-~~~~~~~~ 105 (290)
T 1t4h_A 27 FLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWEST-VKGKKCIV 105 (290)
T ss_dssp EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEE-SSSCEEEE
T ss_pred eEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccc-cCCCceEE
Confidence 3677789999999999999999999999999997543 33456789999999999999999999986532 23456789
Q ss_pred EEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeec-CCCcEE
Q 003368 722 LVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLD-NNLTAH 800 (825)
Q Consensus 722 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~-~~~~~k 800 (825)
+||||+++|+|.+++.. ...+++..+..++.|+++||+|||+.. ++|+||||||+||+++ +++.+|
T Consensus 106 lv~e~~~~~~L~~~l~~------------~~~~~~~~~~~~~~qi~~~l~~lH~~~-~~i~H~dikp~Nil~~~~~~~~k 172 (290)
T 1t4h_A 106 LVTELMTSGTLKTYLKR------------FKVMKIKVLRSWCRQILKGLQFLHTRT-PPIIHRDLKCDNIFITGPTGSVK 172 (290)
T ss_dssp EEEECCCSCBHHHHHHH------------HSSCCHHHHHHHHHHHHHHHHHHHTSS-SCCCCSCCCGGGEEESSTTSCEE
T ss_pred EEEEecCCCCHHHHHHH------------ccCCCHHHHHHHHHHHHHHHHHHHcCC-CCEEECCCCHHHEEEECCCCCEE
Confidence 99999999999999842 246889999999999999999999861 2399999999999998 789999
Q ss_pred EcccCccccccc
Q 003368 801 VGDFGLARLRQE 812 (825)
Q Consensus 801 i~DFGla~~~~~ 812 (825)
|+|||+|+....
T Consensus 173 l~Dfg~~~~~~~ 184 (290)
T 1t4h_A 173 IGDLGLATLKRA 184 (290)
T ss_dssp ECCTTGGGGCCT
T ss_pred EeeCCCcccccc
Confidence 999999986543
No 212
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=99.90 E-value=7.9e-24 Score=227.06 Aligned_cols=149 Identities=28% Similarity=0.359 Sum_probs=128.6
Q ss_pred ccccc-cceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcC-CCCCceeEeecccccccCCCCee
Q 003368 643 DGFSS-THLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNI-RHRNLVRVITSCSSIDFQGNDFK 720 (825)
Q Consensus 643 ~~f~~-~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~~~~ 720 (825)
+.|.. .+.||+|+||.||+|+...+|+.||||++........+.+.+|++++.++ +||||+++++++. +++..
T Consensus 12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~-----~~~~~ 86 (316)
T 2ac3_A 12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFE-----EEDRF 86 (316)
T ss_dssp TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEE-----ETTEE
T ss_pred eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEe-----eCCEE
Confidence 34665 47899999999999999889999999999876555667899999999985 7999999999854 36788
Q ss_pred eEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc--
Q 003368 721 ALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT-- 798 (825)
Q Consensus 721 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~-- 798 (825)
++||||+++|+|.+++.. ...+++.++..++.|+++||+|||+. +|+||||||+||+++.++.
T Consensus 87 ~lv~e~~~~~~L~~~l~~------------~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~ 151 (316)
T 2ac3_A 87 YLVFEKMRGGSILSHIHK------------RRHFNELEASVVVQDVASALDFLHNK---GIAHRDLKPENILCEHPNQVS 151 (316)
T ss_dssp EEEEECCTTCBHHHHHHH------------HSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESCSSSSC
T ss_pred EEEEEcCCCCcHHHHHhc------------cCCCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEEccCCCcC
Confidence 999999999999999842 24689999999999999999999996 9999999999999998765
Q ss_pred -EEEcccCcccccc
Q 003368 799 -AHVGDFGLARLRQ 811 (825)
Q Consensus 799 -~ki~DFGla~~~~ 811 (825)
+||+|||+++...
T Consensus 152 ~~kl~Dfg~~~~~~ 165 (316)
T 2ac3_A 152 PVKICDFDLGSGIK 165 (316)
T ss_dssp SEEECCTTCCC---
T ss_pred ceEEEEccCccccc
Confidence 9999999998764
No 213
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=99.90 E-value=5.9e-24 Score=235.41 Aligned_cols=162 Identities=22% Similarity=0.319 Sum_probs=125.9
Q ss_pred cccccc-ceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhh-cCCCCCceeEeecccccccCCCCee
Q 003368 643 DGFSST-HLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALR-NIRHRNLVRVITSCSSIDFQGNDFK 720 (825)
Q Consensus 643 ~~f~~~-~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~-~l~H~niv~l~~~~~~~~~~~~~~~ 720 (825)
++|... ++||+|+||+||+|++..+|+.||||+++.. ..+.+|++++. ..+||||+++++++... +.+....
T Consensus 61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~-----~~~~~E~~~~~~~~~hp~iv~l~~~~~~~-~~~~~~~ 134 (400)
T 1nxk_A 61 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENL-YAGRKCL 134 (400)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEE-ETTEEEE
T ss_pred ccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc-----hhHHHHHHHHHHhcCCCCcceEeEEEeec-ccCCcEE
Confidence 456555 7899999999999999999999999998632 45678888874 45899999999986431 2335678
Q ss_pred eEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecC---CC
Q 003368 721 ALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDN---NL 797 (825)
Q Consensus 721 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~---~~ 797 (825)
|+||||+++|+|.+++... ....+++.++..|+.|+++||+|||+. +|+||||||+|||++. ++
T Consensus 135 ~lv~E~~~gg~L~~~l~~~----------~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~ 201 (400)
T 1nxk_A 135 LIVMECLDGGELFSRIQDR----------GDQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNA 201 (400)
T ss_dssp EEEEECCCSEEHHHHHHCC-------------CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSTTC
T ss_pred EEEEEeCCCCcHHHHHHHh----------CCCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCcceEEEecCCCCc
Confidence 9999999999999999642 123589999999999999999999985 9999999999999997 78
Q ss_pred cEEEcccCcccccccCCCCCccccccC
Q 003368 798 TAHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 798 ~~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
.+||+|||+|+...... ...+.+||+
T Consensus 202 ~~kl~DFG~a~~~~~~~-~~~~~~gt~ 227 (400)
T 1nxk_A 202 ILKLTDFGFAKETTSHN-SLTTPCYTP 227 (400)
T ss_dssp CEEECCCTTCEECC------------C
T ss_pred cEEEEecccccccCCCC-ccccCCCCC
Confidence 99999999999765432 223445554
No 214
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=99.90 E-value=5.4e-24 Score=233.13 Aligned_cols=157 Identities=23% Similarity=0.311 Sum_probs=135.5
Q ss_pred hhcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc-hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCC
Q 003368 640 KATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ-GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGND 718 (825)
Q Consensus 640 ~~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~-~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~ 718 (825)
...++|...+.||+|+||.||+|+...+++.||||++..... ...+.+.+|++++++++||||+++++++.........
T Consensus 24 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 103 (364)
T 3qyz_A 24 DVGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMK 103 (364)
T ss_dssp CCTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCC
T ss_pred cccccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccc
Confidence 345679999999999999999999988999999999975432 3346789999999999999999999987654444445
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..++||||+. |+|.+++.. ..+++.++..|+.|++.||+|||+. +|+||||||+||+++.++.
T Consensus 104 ~~~iv~e~~~-~~L~~~l~~-------------~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~ 166 (364)
T 3qyz_A 104 DVYIVQDLME-TDLYKLLKT-------------QHLSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCD 166 (364)
T ss_dssp CEEEEEECCS-EEHHHHHHH-------------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCC
T ss_pred eEEEEEcccC-cCHHHHHHh-------------CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChHhEEECCCCC
Confidence 7899999997 589888742 3589999999999999999999986 9999999999999999999
Q ss_pred EEEcccCcccccccC
Q 003368 799 AHVGDFGLARLRQEV 813 (825)
Q Consensus 799 ~ki~DFGla~~~~~~ 813 (825)
+||+|||+|+.....
T Consensus 167 ~kl~Dfg~a~~~~~~ 181 (364)
T 3qyz_A 167 LKICDFGLARVADPD 181 (364)
T ss_dssp EEECCCTTCEECCGG
T ss_pred EEEEeCcceEecCCC
Confidence 999999999977543
No 215
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=99.90 E-value=8.9e-24 Score=224.98 Aligned_cols=156 Identities=26% Similarity=0.408 Sum_probs=133.5
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccc--------
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSID-------- 713 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~-------- 713 (825)
.++|+..+.||+|+||.||+|+...+|+.||||++... ....+.+.+|++++++++||||++++++|....
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~ 83 (303)
T 1zy4_A 5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTA 83 (303)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC----
T ss_pred cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcc
Confidence 45688999999999999999999889999999999653 334577899999999999999999999864311
Q ss_pred cCCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeee
Q 003368 714 FQGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILL 793 (825)
Q Consensus 714 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl 793 (825)
.......++||||+++|+|.+++... ...+++.++..++.|+++||+|||+. +|+||||||+||++
T Consensus 84 ~~~~~~~~lv~e~~~~~~L~~~l~~~-----------~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dlkp~Nil~ 149 (303)
T 1zy4_A 84 VKKKSTLFIQMEYCENGTLYDLIHSE-----------NLNQQRDEYWRLFRQILEALSYIHSQ---GIIHRDLKPMNIFI 149 (303)
T ss_dssp --CEEEEEEEEECCCSCBHHHHHHHS-----------CGGGCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEE
T ss_pred cccCCceEEEEecCCCCCHHHhhhcc-----------ccccchHHHHHHHHHHHHHHHHHHhC---CeecccCCHHhEEE
Confidence 12345689999999999999999522 23578889999999999999999986 89999999999999
Q ss_pred cCCCcEEEcccCccccccc
Q 003368 794 DNNLTAHVGDFGLARLRQE 812 (825)
Q Consensus 794 ~~~~~~ki~DFGla~~~~~ 812 (825)
+.++.+||+|||+++....
T Consensus 150 ~~~~~~kl~dfg~~~~~~~ 168 (303)
T 1zy4_A 150 DESRNVKIGDFGLAKNVHR 168 (303)
T ss_dssp CTTSCEEECCCCCCSCTTC
T ss_pred cCCCCEEEeeCcchhhccc
Confidence 9999999999999987653
No 216
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=99.90 E-value=2.2e-24 Score=229.76 Aligned_cols=150 Identities=22% Similarity=0.379 Sum_probs=130.4
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCeee
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFKA 721 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~~ 721 (825)
.+.|+..+.||+|+||.||+|++..+|+.||+|++........+.+.+|++++++++||||+++++++. ..+..+
T Consensus 18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~~~ 92 (302)
T 2j7t_A 18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYY-----HDGKLW 92 (302)
T ss_dssp GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----CC-CEE
T ss_pred ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeee-----eCCeEE
Confidence 456888999999999999999998889999999998765556788999999999999999999999864 356789
Q ss_pred EEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcEEE
Q 003368 722 LVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTAHV 801 (825)
Q Consensus 722 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ki 801 (825)
+||||+++|+|.+++.. ....+++.++..++.|+++||+|||+. +|+||||||+||+++.++.+||
T Consensus 93 lv~e~~~~~~l~~~~~~-----------~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl 158 (302)
T 2j7t_A 93 IMIEFCPGGAVDAIMLE-----------LDRGLTEPQIQVVCRQMLEALNFLHSK---RIIHRDLKAGNVLMTLEGDIRL 158 (302)
T ss_dssp EEEECCTTEEHHHHHHH-----------HTSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEE
T ss_pred EEEEeCCCCcHHHHHHh-----------hccCCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEECCCCCEEE
Confidence 99999999999998742 224689999999999999999999986 8999999999999999999999
Q ss_pred cccCccccc
Q 003368 802 GDFGLARLR 810 (825)
Q Consensus 802 ~DFGla~~~ 810 (825)
+|||+++..
T Consensus 159 ~Dfg~~~~~ 167 (302)
T 2j7t_A 159 ADFGVSAKN 167 (302)
T ss_dssp CCCHHHHHH
T ss_pred EECCCCccc
Confidence 999997643
No 217
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=99.90 E-value=1.1e-23 Score=224.88 Aligned_cols=148 Identities=35% Similarity=0.550 Sum_probs=125.8
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc--chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCe
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL--QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDF 719 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~ 719 (825)
.++|...+.||+|+||.||+|++.. .||||+++... ....+.|.+|++++++++||||+++++++. .+.
T Consensus 35 ~~~~~~~~~lG~G~~g~Vy~~~~~~---~~avk~~k~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~------~~~ 105 (307)
T 3lb7_A 35 ASEVMLSTRIGSGSFGTVYKGKWHG---DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT------KDN 105 (307)
T ss_dssp TTSCCEEEEEEECSSCEEEEEESSS---EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC------SSS
T ss_pred ccceEEEeEecCCCCeEEEEEEECC---EEEEEEEecCCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc------cCc
Confidence 4578889999999999999998742 58999887543 234568999999999999999999999753 345
Q ss_pred eeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcE
Q 003368 720 KALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTA 799 (825)
Q Consensus 720 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ 799 (825)
.++||||+++|+|.+++... ...+++.++..|+.|+++||+|||+. +|+||||||+|||+++++.+
T Consensus 106 ~~lv~e~~~~~~L~~~l~~~-----------~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~ 171 (307)
T 3lb7_A 106 LAIVTQWCEGSSLYKHLHVQ-----------ETKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTV 171 (307)
T ss_dssp CEEEEECCSSCBHHHHHHTS-----------CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCSSSEEECTTSCE
T ss_pred EEEEEecCCCCcHHHHHHhc-----------ccCCCHHHHHHHHHHHHHHHHHHHhC---CEeeCCCChhhEEEcCCCCE
Confidence 78999999999999998532 24689999999999999999999986 89999999999999999999
Q ss_pred EEcccCccccccc
Q 003368 800 HVGDFGLARLRQE 812 (825)
Q Consensus 800 ki~DFGla~~~~~ 812 (825)
||+|||+|+....
T Consensus 172 kl~DFg~a~~~~~ 184 (307)
T 3lb7_A 172 KIGDFGLATVKSR 184 (307)
T ss_dssp EECCCCSSCC---
T ss_pred EEccCCCceeccc
Confidence 9999999987643
No 218
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=99.90 E-value=1.4e-23 Score=240.06 Aligned_cols=162 Identities=22% Similarity=0.364 Sum_probs=135.1
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc-------------hhHHHHHHHHHHhhcCCCCCceeEeec
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ-------------GASKSFAAECRALRNIRHRNLVRVITS 708 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~-------------~~~~~~~~E~~~l~~l~H~niv~l~~~ 708 (825)
.+.|...+.||+|+||+||+|+...+++.||||++..... ...+.+.+|++++++++|||||+++++
T Consensus 35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~ 114 (504)
T 3q5i_A 35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDV 114 (504)
T ss_dssp GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence 4678999999999999999999998999999999975431 234678999999999999999999998
Q ss_pred ccccccCCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCC
Q 003368 709 CSSIDFQGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKP 788 (825)
Q Consensus 709 ~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~ 788 (825)
| .+....++||||+++|+|.+++.. ...+++.++..|+.|++.||+|||+. +|+||||||
T Consensus 115 ~-----~~~~~~~lv~e~~~gg~L~~~l~~------------~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp 174 (504)
T 3q5i_A 115 F-----EDKKYFYLVTEFYEGGELFEQIIN------------RHKFDECDAANIMKQILSGICYLHKH---NIVHRDIKP 174 (504)
T ss_dssp E-----ECSSEEEEEEECCTTCBHHHHHHH------------HSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSG
T ss_pred E-----EcCCEEEEEEecCCCCcHHHHHHH------------cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCcH
Confidence 5 346788999999999999998842 24689999999999999999999986 999999999
Q ss_pred CCeeecCCC---cEEEcccCcccccccCCCCCccccccC
Q 003368 789 SNILLDNNL---TAHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 789 ~NILl~~~~---~~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
+|||++.++ .+||+|||+|+...... .....+||+
T Consensus 175 ~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~gt~ 212 (504)
T 3q5i_A 175 ENILLENKNSLLNIKIVDFGLSSFFSKDY-KLRDRLGTA 212 (504)
T ss_dssp GGEEESSTTCCSSEEECCCTTCEECCTTS-CBCCCCSCT
T ss_pred HHEEEecCCCCccEEEEECCCCEEcCCCC-ccccccCCc
Confidence 999998775 69999999999875542 234445664
No 219
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=99.90 E-value=2.3e-24 Score=232.03 Aligned_cols=165 Identities=24% Similarity=0.451 Sum_probs=121.0
Q ss_pred hhcccccccceeccCCeeEEEEEEEcCCCe---EEEEEEeeccc--chhHHHHHHHHHHhhcCCCCCceeEeeccccccc
Q 003368 640 KATDGFSSTHLIGIGSFGSVYKGTFDRDGT---IVAIKVLNLQL--QGASKSFAAECRALRNIRHRNLVRVITSCSSIDF 714 (825)
Q Consensus 640 ~~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~---~vAvK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~ 714 (825)
...++|...+.||+|+||.||+|++..++. .||||+++... ....+.+.+|++++++++||||+++++++.....
T Consensus 20 i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 99 (323)
T 3qup_A 20 IPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRA 99 (323)
T ss_dssp CC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC--
T ss_pred cChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeecccc
Confidence 345679999999999999999999866664 89999997652 3446789999999999999999999998654211
Q ss_pred CCC-CeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeee
Q 003368 715 QGN-DFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILL 793 (825)
Q Consensus 715 ~~~-~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl 793 (825)
.+. ...++||||+++|+|.+++..... ......+++.++..|+.|+++||+|||+. +|+||||||+||++
T Consensus 100 ~~~~~~~~~v~e~~~~~~L~~~l~~~~~------~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~Dikp~NIli 170 (323)
T 3qup_A 100 KGRLPIPMVILPFMKHGDLHAFLLASRI------GENPFNLPLQTLVRFMVDIACGMEYLSSR---NFIHRDLAARNCML 170 (323)
T ss_dssp -----CEEEEEECCTTCBHHHHHHHHHC---------CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEE
T ss_pred ccCCCccEEEEEeccCCcHHHHHHhhhc------cccccccCHHHHHHHHHHHHHHHHHHHcC---CcccCCCCcceEEE
Confidence 110 123899999999999999853210 11123589999999999999999999986 89999999999999
Q ss_pred cCCCcEEEcccCcccccccC
Q 003368 794 DNNLTAHVGDFGLARLRQEV 813 (825)
Q Consensus 794 ~~~~~~ki~DFGla~~~~~~ 813 (825)
++++.+||+|||+|+.....
T Consensus 171 ~~~~~~kl~Dfg~a~~~~~~ 190 (323)
T 3qup_A 171 AEDMTVCVADFGLSRKIYSG 190 (323)
T ss_dssp CTTSCEEECCCCC-------
T ss_pred cCCCCEEEeecccccccccc
Confidence 99999999999999876543
No 220
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=99.90 E-value=9.8e-24 Score=240.71 Aligned_cols=161 Identities=22% Similarity=0.344 Sum_probs=132.5
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc--chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCee
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL--QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFK 720 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~ 720 (825)
+.|...+.||+|+||+||+|+...+++.||||++.... ....+.+.+|+++++.++|||||+++++|. .....
T Consensus 37 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~-----~~~~~ 111 (494)
T 3lij_A 37 EMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFE-----DKRNY 111 (494)
T ss_dssp HHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSSEE
T ss_pred cCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEE-----eCCEE
Confidence 45888999999999999999998899999999997653 233567899999999999999999999853 46778
Q ss_pred eEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecC---CC
Q 003368 721 ALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDN---NL 797 (825)
Q Consensus 721 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~---~~ 797 (825)
++||||+++|+|.+++.. ...+++.++..|+.|+++||+|||+. +|+||||||+|||++. ++
T Consensus 112 ~lv~e~~~~g~L~~~~~~------------~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~ 176 (494)
T 3lij_A 112 YLVMECYKGGELFDEIIH------------RMKFNEVDAAVIIKQVLSGVTYLHKH---NIVHRDLKPENLLLESKEKDA 176 (494)
T ss_dssp EEEEECCCSCBHHHHHHH------------HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTC
T ss_pred EEEEecCCCCcHHHHHHH------------cCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChhhEEEeCCCCCC
Confidence 999999999999988842 24689999999999999999999986 9999999999999976 45
Q ss_pred cEEEcccCcccccccCCCCCccccccC
Q 003368 798 TAHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 798 ~~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
.+||+|||+|+...... .....+||+
T Consensus 177 ~~kl~DfG~a~~~~~~~-~~~~~~gt~ 202 (494)
T 3lij_A 177 LIKIVDFGLSAVFENQK-KMKERLGTA 202 (494)
T ss_dssp CEEECCCTTCEECBTTB-CBCCCCSCT
T ss_pred cEEEEECCCCeECCCCc-cccccCCCc
Confidence 59999999999876532 234445664
No 221
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=99.90 E-value=6.1e-24 Score=232.68 Aligned_cols=154 Identities=25% Similarity=0.365 Sum_probs=125.4
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc--chhHHHHHHHHHHhhcCCCCCceeEeecccccc-cCCCC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL--QGASKSFAAECRALRNIRHRNLVRVITSCSSID-FQGND 718 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~-~~~~~ 718 (825)
.+.|...+.||+|+||.||+|+...+|+.||||++.... ....+.+.+|++++++++||||+++++++.... .....
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 103 (367)
T 1cm8_A 24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT 103 (367)
T ss_dssp BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence 467889999999999999999998999999999996542 233567899999999999999999999865321 11123
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..|+||||+ +++|.+++.. ..+++..+..++.|+++||+|||+. +|+||||||+||+++.++.
T Consensus 104 ~~~lv~e~~-~~~L~~~~~~-------------~~l~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~ 166 (367)
T 1cm8_A 104 DFYLVMPFM-GTDLGKLMKH-------------EKLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCE 166 (367)
T ss_dssp CCEEEEECC-SEEHHHHHHH-------------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCC
T ss_pred eEEEEEecC-CCCHHHHHhc-------------CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCHHHEEEcCCCC
Confidence 469999999 8899988842 3588999999999999999999986 9999999999999999999
Q ss_pred EEEcccCccccccc
Q 003368 799 AHVGDFGLARLRQE 812 (825)
Q Consensus 799 ~ki~DFGla~~~~~ 812 (825)
+||+|||+|+....
T Consensus 167 ~kl~Dfg~a~~~~~ 180 (367)
T 1cm8_A 167 LKILDFGLARQADS 180 (367)
T ss_dssp EEECCCTTCEECCS
T ss_pred EEEEeeeccccccc
Confidence 99999999997654
No 222
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=99.90 E-value=6.1e-24 Score=228.04 Aligned_cols=157 Identities=22% Similarity=0.245 Sum_probs=134.0
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCeee
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFKA 721 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~~ 721 (825)
.++|...+.||+|+||.||+|+...+|+.||||++........+.+.+|++++++++||||+++++++... .......+
T Consensus 28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~~~~~ 106 (317)
T 2buj_A 28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRE-RGAKHEAW 106 (317)
T ss_dssp TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEE-ETTEEEEE
T ss_pred CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEec-cCCCceeE
Confidence 45789999999999999999999889999999999776556677899999999999999999999987531 12244689
Q ss_pred EEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcEEE
Q 003368 722 LVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTAHV 801 (825)
Q Consensus 722 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ki 801 (825)
+||||+++|+|.+++... ......+++.++..++.|+++||+|||+. +|+||||||+||+++.++.+||
T Consensus 107 lv~e~~~~~~L~~~l~~~--------~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dlkp~NIl~~~~~~~kl 175 (317)
T 2buj_A 107 LLLPFFKRGTLWNEIERL--------KDKGNFLTEDQILWLLLGICRGLEAIHAK---GYAHRDLKPTNILLGDEGQPVL 175 (317)
T ss_dssp EEEECCTTCBHHHHHHHH--------HTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEE
T ss_pred EEEEeCCCCcHHHHHHHH--------HhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCCCCEEE
Confidence 999999999999998531 11235689999999999999999999986 9999999999999999999999
Q ss_pred cccCccccc
Q 003368 802 GDFGLARLR 810 (825)
Q Consensus 802 ~DFGla~~~ 810 (825)
+|||+++..
T Consensus 176 ~dfg~~~~~ 184 (317)
T 2buj_A 176 MDLGSMNQA 184 (317)
T ss_dssp CCCSSCEES
T ss_pred EecCcchhc
Confidence 999998765
No 223
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=99.90 E-value=8.7e-24 Score=226.10 Aligned_cols=166 Identities=23% Similarity=0.355 Sum_probs=126.9
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc---chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL---QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGND 718 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~---~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~ 718 (825)
.++|...+.||+|+||.||+|+...+|+.||||++.... ....+.+.+|++++++++||||+++++++.. .+
T Consensus 31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----~~ 105 (310)
T 2wqm_A 31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIE-----DN 105 (310)
T ss_dssp GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEE-----TT
T ss_pred ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEc-----CC
Confidence 457899999999999999999998899999999997532 2345678999999999999999999998643 56
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..++||||+++|+|.+++... ......+++.++..++.|+++||+|||+. +|+||||||+||+++.++.
T Consensus 106 ~~~lv~e~~~~~~L~~~l~~~--------~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIl~~~~~~ 174 (310)
T 2wqm_A 106 ELNIVLELADAGDLSRMIKHF--------KKQKRLIPERTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGV 174 (310)
T ss_dssp EEEEEEECCCSCBHHHHHHHH--------HHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSC
T ss_pred cEEEEEecCCCCCHHHHHHHh--------cccccCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCcHHHEEEcCCCC
Confidence 789999999999999998421 11234689999999999999999999986 9999999999999999999
Q ss_pred EEEcccCcccccccCCCCCcccccc
Q 003368 799 AHVGDFGLARLRQEVPNNQSSSVGD 823 (825)
Q Consensus 799 ~ki~DFGla~~~~~~~~~~~~~~gt 823 (825)
+||+|||+++.............||
T Consensus 175 ~kl~Dfg~~~~~~~~~~~~~~~~~~ 199 (310)
T 2wqm_A 175 VKLGDLGLGRFFSSKTTAAHSLVGT 199 (310)
T ss_dssp EEECCC------------------C
T ss_pred EEEEeccceeeecCCCccccccCCC
Confidence 9999999998765543333333444
No 224
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=99.90 E-value=9.6e-24 Score=222.96 Aligned_cols=156 Identities=26% Similarity=0.397 Sum_probs=133.0
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc--chhHHHHHHHHHHhhcC-CCCCceeEeecccccccCCCC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL--QGASKSFAAECRALRNI-RHRNLVRVITSCSSIDFQGND 718 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~--~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~~ 718 (825)
.++|...+.||+|+||.||+|+...+++.||||++.... .....++.+|+..+.++ +||||+++++++. .++
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~-----~~~ 84 (289)
T 1x8b_A 10 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWA-----EDD 84 (289)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEE-----ETT
T ss_pred cchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeee-----cCC
Confidence 456889999999999999999998899999999997643 33456788999999999 8999999999864 366
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecC---
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDN--- 795 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~--- 795 (825)
..++||||+++|+|.+++... ......+++.++..|+.|+++||+|||+. +|+||||||+||+++.
T Consensus 85 ~~~lv~e~~~~~~L~~~l~~~--------~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~ 153 (289)
T 1x8b_A 85 HMLIQNEYCNGGSLADAISEN--------YRIMSYFKEAELKDLLLQVGRGLRYIHSM---SLVHMDIKPSNIFISRTSI 153 (289)
T ss_dssp EEEEEEECCTTCBHHHHHHHH--------HHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEC----
T ss_pred eEEEEEEecCCCcHHHHHHhh--------cccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeecCCCHHHEEEcCCCC
Confidence 889999999999999998521 11224689999999999999999999986 9999999999999984
Q ss_pred ----------------CCcEEEcccCcccccccC
Q 003368 796 ----------------NLTAHVGDFGLARLRQEV 813 (825)
Q Consensus 796 ----------------~~~~ki~DFGla~~~~~~ 813 (825)
...+||+|||+++.....
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~ 187 (289)
T 1x8b_A 154 PNAASEEGDEDDWASNKVMFKIGDLGHVTRISSP 187 (289)
T ss_dssp ----------------CCCEEECCCTTCEETTCS
T ss_pred CcccccccccccccCCceEEEEcccccccccCCc
Confidence 447999999999987543
No 225
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=99.90 E-value=6.1e-24 Score=229.57 Aligned_cols=162 Identities=26% Similarity=0.382 Sum_probs=131.0
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc--hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCe
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ--GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDF 719 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~--~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~ 719 (825)
.++|+..+.||+|+||.||+|+...+|+.||||++..... ...+.+.+|++++++++||||++++++|. +.+.
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~~~ 98 (331)
T 4aaa_A 24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCK-----KKKR 98 (331)
T ss_dssp GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----ETTE
T ss_pred hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEee-----cCCE
Confidence 4578899999999999999999988999999999865433 23456889999999999999999999864 3667
Q ss_pred eeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcE
Q 003368 720 KALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTA 799 (825)
Q Consensus 720 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ 799 (825)
.++||||+++++|.++.... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+
T Consensus 99 ~~lv~e~~~~~~l~~~~~~~------------~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nil~~~~~~~ 163 (331)
T 4aaa_A 99 WYLVFEFVDHTILDDLELFP------------NGLDYQVVQKYLFQIINGIGFCHSH---NIIHRDIKPENILVSQSGVV 163 (331)
T ss_dssp EEEEEECCSEEHHHHHHHST------------TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCE
T ss_pred EEEEEecCCcchHHHHHhhc------------cCCCHHHHHHHHHHHHHHHHHHHHC---CEEccCcChheEEEcCCCcE
Confidence 89999999999998876322 3589999999999999999999986 99999999999999999999
Q ss_pred EEcccCcccccccCCCCCcccccc
Q 003368 800 HVGDFGLARLRQEVPNNQSSSVGD 823 (825)
Q Consensus 800 ki~DFGla~~~~~~~~~~~~~~gt 823 (825)
||+|||+++.............||
T Consensus 164 kl~Dfg~~~~~~~~~~~~~~~~~t 187 (331)
T 4aaa_A 164 KLCDFGFARTLAAPGEVYDDEVAT 187 (331)
T ss_dssp EECCCTTC------------CCCC
T ss_pred EEEeCCCceeecCCccccCCCcCC
Confidence 999999998765543333333444
No 226
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=1.4e-25 Score=245.44 Aligned_cols=258 Identities=16% Similarity=0.173 Sum_probs=164.3
Q ss_pred EEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCC----ccccCCC-CCCEEECCCCcCCCCCCcCCCCC-----CC
Q 003368 36 VLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIP----GEIGRLF-RLEALYLSHNSLVGEIPGNLSYC-----SR 105 (825)
Q Consensus 36 ~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~ 105 (825)
.++++.|++.+.+|..+...++|++|||++|.|++..+ ..|..++ +|++|+|++|+|++..+..|..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788888888888887777789999999999887666 7788888 89999999998888777777665 88
Q ss_pred CCEEEcCCCCCCCCCChhhhcc-----cccceeeccccccccccCccC----CCC-CCCCEEEcccCcCcccCCcc----
Q 003368 106 LIGLYLGRNKLEGSIPSEFVSL-----YNLKELAIQENNLTGGIPHFL----GNI-TSLEAISLAYNSLGGNIPSS---- 171 (825)
Q Consensus 106 L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~~----~~l-~~L~~L~Ls~N~l~~~~p~~---- 171 (825)
|++|+|++|+|++..+..+... ++|++|+|++|++++..+..+ ..+ ++|++|+|++|+++...+..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 8999999998887777655544 788888888888886665543 332 58888888888887533322
Q ss_pred ccccc-ccceecCcCcCCccccCCCCCceeecCCccccccCCchhh---hcC-CCCcEEEcccccCCCC----CCccccC
Q 003368 172 LGQLK-ELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLPPSLG---LTL-SNLQLFQISNNFFSGS----FPLAFSN 242 (825)
Q Consensus 172 ~~~l~-~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~~~---~~l-~~L~~L~Ls~N~l~~~----~p~~~~~ 242 (825)
+..++ +|++| ++++|++++..+..+. ... ++|++|+|++|.+++. ++..+..
T Consensus 162 l~~~~~~L~~L-------------------~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 162 LAAIPANVNSL-------------------NLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp HHTSCTTCCEE-------------------ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred HhcCCccccEe-------------------eecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 22332 44444 6666666644433322 123 4677777777766643 2233333
Q ss_pred -CCCccEEEeecccccCccc----cCcCCCCCCcEEEcccccCCCCCCC-ccccccccccCCCCCEEEcccccccc
Q 003368 243 -ASNLQSLEILGNNFFGKLS----VNFGDMKSLAYLNVAINNLGSGESD-EMSFIHSLANCSNLSFLNLVANQFKG 312 (825)
Q Consensus 243 -l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~ls~N~l~~~~~~-~~~~~~~~~~l~~L~~L~L~~N~l~~ 312 (825)
.++|++|+|++|++.+... ..+..+++|+.|++++|.+...... ...++..+..+++|+.||+++|.+.+
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 3466666666666654432 2334455555555555554332211 11122334445555555555555543
No 227
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=99.90 E-value=2.8e-24 Score=234.34 Aligned_cols=163 Identities=24% Similarity=0.297 Sum_probs=135.3
Q ss_pred cccccccceeccCCeeEEEEEEEc---CCCeEEEEEEeeccc----chhHHHHHHHHHHhhcC-CCCCceeEeecccccc
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFD---RDGTIVAIKVLNLQL----QGASKSFAAECRALRNI-RHRNLVRVITSCSSID 713 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~---~~g~~vAvK~~~~~~----~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~ 713 (825)
.++|...+.||+|+||.||+|+.. .+|+.||||+++... ....+.+.+|+++++++ +||||+++++++.
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~--- 129 (355)
T 1vzo_A 53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQ--- 129 (355)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEE---
T ss_pred ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEe---
Confidence 467999999999999999999984 488999999987532 22345677899999999 6999999999853
Q ss_pred cCCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeee
Q 003368 714 FQGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILL 793 (825)
Q Consensus 714 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl 793 (825)
.++..++||||+++|+|.+++.. ...+++.++..++.|+++||+|||+. +|+||||||+|||+
T Consensus 130 --~~~~~~lv~e~~~~~~L~~~l~~------------~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll 192 (355)
T 1vzo_A 130 --TETKLHLILDYINGGELFTHLSQ------------RERFTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILL 192 (355)
T ss_dssp --ETTEEEEEECCCCSCBHHHHHHH------------HSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEE
T ss_pred --eCceEEEEeecCCCCCHHHHHHH------------cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEE
Confidence 35678999999999999999842 24689999999999999999999985 89999999999999
Q ss_pred cCCCcEEEcccCcccccccCCC-CCccccccC
Q 003368 794 DNNLTAHVGDFGLARLRQEVPN-NQSSSVGDL 824 (825)
Q Consensus 794 ~~~~~~ki~DFGla~~~~~~~~-~~~~~~gt~ 824 (825)
+.++.+||+|||+|+....... .....+||+
T Consensus 193 ~~~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~ 224 (355)
T 1vzo_A 193 DSNGHVVLTDFGLSKEFVADETERAYDFCGTI 224 (355)
T ss_dssp CTTSCEEESCSSEEEECCGGGGGGGCGGGSCC
T ss_pred CCCCcEEEeeCCCCeecccCCCCcccCcccCc
Confidence 9999999999999987643322 223345654
No 228
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=99.90 E-value=3.5e-24 Score=226.56 Aligned_cols=155 Identities=27% Similarity=0.479 Sum_probs=136.3
Q ss_pred hhcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCe
Q 003368 640 KATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDF 719 (825)
Q Consensus 640 ~~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~ 719 (825)
...++|...+.||+|+||.||+|++..+++.||||++.... ...+.+.+|++++++++||||++++++|. .+..
T Consensus 10 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~~~~ 83 (288)
T 3kfa_A 10 MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCT-----REPP 83 (288)
T ss_dssp CCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS-THHHHHHHHHHHHHHCCCTTBCCEEEEEC-----SSSS
T ss_pred ccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH-HHHHHHHHHHHHHHhCCCCCEeeEEEEEc-----cCCC
Confidence 35577899999999999999999998889999999997543 34578999999999999999999999853 4567
Q ss_pred eeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcE
Q 003368 720 KALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTA 799 (825)
Q Consensus 720 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ 799 (825)
.++||||+++|+|.+++... ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+
T Consensus 84 ~~~v~e~~~~~~L~~~~~~~----------~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~ 150 (288)
T 3kfa_A 84 FYIITEFMTYGNLLDYLREC----------NRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLV 150 (288)
T ss_dssp EEEEEECCTTEEHHHHHHHC----------CTTTSCHHHHHHHHHHHHHHHHHHHHH---TCCCSCCSGGGEEECGGGCE
T ss_pred EEEEEEcCCCCcHHHHHHhc----------ccCCccHhHHHHHHHHHHHHHHHHHHC---CccCCCCCcceEEEcCCCCE
Confidence 89999999999999998532 124589999999999999999999986 89999999999999999999
Q ss_pred EEcccCcccccccC
Q 003368 800 HVGDFGLARLRQEV 813 (825)
Q Consensus 800 ki~DFGla~~~~~~ 813 (825)
||+|||+|+.....
T Consensus 151 ~l~Dfg~~~~~~~~ 164 (288)
T 3kfa_A 151 KVADFGLSRLMTGD 164 (288)
T ss_dssp EECCCCGGGTSCSS
T ss_pred EEccCccceeccCC
Confidence 99999999987544
No 229
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=99.90 E-value=1.5e-23 Score=231.09 Aligned_cols=164 Identities=24% Similarity=0.421 Sum_probs=134.3
Q ss_pred cccccccceeccCCeeEEEEEEEcC-------CCeEEEEEEeecccc-hhHHHHHHHHHHhhcC-CCCCceeEeeccccc
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDR-------DGTIVAIKVLNLQLQ-GASKSFAAECRALRNI-RHRNLVRVITSCSSI 712 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~-------~g~~vAvK~~~~~~~-~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~ 712 (825)
.++|...+.||+|+||.||+|++.. .+..||||++..... ...+.+.+|+++++++ +|||||+++++|.
T Consensus 68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~-- 145 (382)
T 3tt0_A 68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACT-- 145 (382)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC--
T ss_pred hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeec--
Confidence 4578889999999999999999743 346899999976543 3346799999999999 8999999999864
Q ss_pred ccCCCCeeeEEEEccCCCChhhhccCCCCCCCc----ccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCC
Q 003368 713 DFQGNDFKALVYQYMPNGSLENWLHPDAIPQTD----EENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKP 788 (825)
Q Consensus 713 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~----~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~ 788 (825)
.++..++||||+++|+|.+++......... ........+++.++..|+.|+++||+|||+. +|+||||||
T Consensus 146 ---~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp 219 (382)
T 3tt0_A 146 ---QDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRDLAA 219 (382)
T ss_dssp ---SSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCG
T ss_pred ---cCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCc
Confidence 356789999999999999999643211000 0011234699999999999999999999985 999999999
Q ss_pred CCeeecCCCcEEEcccCcccccccC
Q 003368 789 SNILLDNNLTAHVGDFGLARLRQEV 813 (825)
Q Consensus 789 ~NILl~~~~~~ki~DFGla~~~~~~ 813 (825)
+|||+++++.+||+|||+|+.....
T Consensus 220 ~NIll~~~~~~kL~DFG~a~~~~~~ 244 (382)
T 3tt0_A 220 RNVLVTEDNVMKIADFGLARDIHHI 244 (382)
T ss_dssp GGEEECTTCCEEECSCSCCCCSSCC
T ss_pred ceEEEcCCCcEEEcccCcccccccc
Confidence 9999999999999999999977543
No 230
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=99.90 E-value=1.9e-23 Score=222.07 Aligned_cols=153 Identities=24% Similarity=0.372 Sum_probs=134.0
Q ss_pred hcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc---------chhHHHHHHHHHHhhcCC-CCCceeEeeccc
Q 003368 641 ATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL---------QGASKSFAAECRALRNIR-HRNLVRVITSCS 710 (825)
Q Consensus 641 ~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~---------~~~~~~~~~E~~~l~~l~-H~niv~l~~~~~ 710 (825)
-.++|...+.||+|+||.||+|+...+|+.||||++.... ....+.+.+|++++++++ ||||+++++++
T Consensus 15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~- 93 (298)
T 1phk_A 15 FYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTY- 93 (298)
T ss_dssp CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE-
T ss_pred hhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeee-
Confidence 3467999999999999999999998899999999997543 122457889999999996 99999999985
Q ss_pred ccccCCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCC
Q 003368 711 SIDFQGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSN 790 (825)
Q Consensus 711 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~N 790 (825)
......++||||+++|+|.+++.. ...+++.++..++.|++.||+|||+. +|+||||||+|
T Consensus 94 ----~~~~~~~lv~e~~~~~~L~~~l~~------------~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~N 154 (298)
T 1phk_A 94 ----ETNTFFFLVFDLMKKGELFDYLTE------------KVTLSEKETRKIMRALLEVICALHKL---NIVHRDLKPEN 154 (298)
T ss_dssp ----ECSSEEEEEEECCTTCBHHHHHHH------------HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGG
T ss_pred ----ccCCeEEEEEeccCCCcHHHHHhc------------cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcce
Confidence 346788999999999999999842 24689999999999999999999986 89999999999
Q ss_pred eeecCCCcEEEcccCcccccccC
Q 003368 791 ILLDNNLTAHVGDFGLARLRQEV 813 (825)
Q Consensus 791 ILl~~~~~~ki~DFGla~~~~~~ 813 (825)
|+++.++.+||+|||+++.....
T Consensus 155 il~~~~~~~kl~dfg~~~~~~~~ 177 (298)
T 1phk_A 155 ILLDDDMNIKLTDFGFSCQLDPG 177 (298)
T ss_dssp EEECTTCCEEECCCTTCEECCTT
T ss_pred EEEcCCCcEEEecccchhhcCCC
Confidence 99999999999999999876543
No 231
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=99.90 E-value=1.6e-23 Score=220.93 Aligned_cols=151 Identities=26% Similarity=0.349 Sum_probs=131.7
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc------hhHHHHHHHHHHhhcCCCCCceeEeecccccccCC
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ------GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQG 716 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~------~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~ 716 (825)
++|...+.||+|+||.||+|+...+|+.||||++..... ...+.+.+|++++++++||||+++++++. .
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~ 79 (283)
T 3bhy_A 5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFE-----N 79 (283)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----C
T ss_pred hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheec-----C
Confidence 458889999999999999999988999999999875432 13578999999999999999999999854 3
Q ss_pred CCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCC
Q 003368 717 NDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNN 796 (825)
Q Consensus 717 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~ 796 (825)
....++||||+++++|.+++.. ...+++.++..++.|+++||+|||+. +|+||||||+||+++.+
T Consensus 80 ~~~~~lv~e~~~~~~L~~~l~~------------~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~ 144 (283)
T 3bhy_A 80 KTDVVLILELVSGGELFDFLAE------------KESLTEDEATQFLKQILDGVHYLHSK---RIAHFDLKPENIMLLDK 144 (283)
T ss_dssp SSEEEEEEECCCSCBHHHHHHH------------HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCS
T ss_pred CCeEEEEEeecCCCcHHHHHHh------------cCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChHHEEEecC
Confidence 5678999999999999999842 24689999999999999999999985 99999999999999887
Q ss_pred C----cEEEcccCcccccccC
Q 003368 797 L----TAHVGDFGLARLRQEV 813 (825)
Q Consensus 797 ~----~~ki~DFGla~~~~~~ 813 (825)
+ .+||+|||+++.....
T Consensus 145 ~~~~~~~kl~dfg~~~~~~~~ 165 (283)
T 3bhy_A 145 NVPNPRIKLIDFGIAHKIEAG 165 (283)
T ss_dssp SSSSCCEEECCCTTCEECC--
T ss_pred CCCCCceEEEecccceeccCC
Confidence 7 8999999999876543
No 232
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=99.90 E-value=4.9e-24 Score=229.75 Aligned_cols=178 Identities=24% Similarity=0.377 Sum_probs=137.7
Q ss_pred cccHHHHHhhcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcC-CCCCceeEeeccc
Q 003368 632 KVSYESLLKATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNI-RHRNLVRVITSCS 710 (825)
Q Consensus 632 ~~~~~~~~~~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~ 710 (825)
.+++.++....+.|...+.||+|+||.||+|++..+|+.||||++.... ...+.+.+|+++++++ +||||+++++++.
T Consensus 13 ~~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~ 91 (326)
T 2x7f_A 13 EIDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFI 91 (326)
T ss_dssp ---CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-STTHHHHHHHHHHHHHCCSTTBCCEEEEEE
T ss_pred hccchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCc-ccHHHHHHHHHHHHhccCCCCeeeeeeEEe
Confidence 3444555566788999999999999999999998899999999997543 3356789999999999 7999999999875
Q ss_pred ccccC-CCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCC
Q 003368 711 SIDFQ-GNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPS 789 (825)
Q Consensus 711 ~~~~~-~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~ 789 (825)
..... ..+..++||||+++|+|.+++... ....+++..+..++.|++.||+|||+. +|+||||||+
T Consensus 92 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~----------~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~ 158 (326)
T 2x7f_A 92 KKNPPGMDDQLWLVMEFCGAGSVTDLIKNT----------KGNTLKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQ 158 (326)
T ss_dssp ECC--CCCCEEEEEEECCTTEEHHHHHHHS----------GGGCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGG
T ss_pred eccCccccceEEEEEEcCCCCcHHHHHHhc----------ccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCcHH
Confidence 42111 145789999999999999998532 224688999999999999999999986 8999999999
Q ss_pred CeeecCCCcEEEcccCcccccccCCCCCcccccc
Q 003368 790 NILLDNNLTAHVGDFGLARLRQEVPNNQSSSVGD 823 (825)
Q Consensus 790 NILl~~~~~~ki~DFGla~~~~~~~~~~~~~~gt 823 (825)
||+++.++.+||+|||+++.............||
T Consensus 159 NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~ 192 (326)
T 2x7f_A 159 NVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGT 192 (326)
T ss_dssp GEEECTTCCEEECCCTTTC-------------CC
T ss_pred HEEEcCCCCEEEeeCcCceecCcCccccccccCC
Confidence 9999999999999999998765443233333444
No 233
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=99.90 E-value=5.1e-24 Score=228.26 Aligned_cols=165 Identities=24% Similarity=0.456 Sum_probs=126.9
Q ss_pred hhcccccccceeccCCeeEEEEEEEcC---CCeEEEEEEeeccc--chhHHHHHHHHHHhhcCCCCCceeEeeccccccc
Q 003368 640 KATDGFSSTHLIGIGSFGSVYKGTFDR---DGTIVAIKVLNLQL--QGASKSFAAECRALRNIRHRNLVRVITSCSSIDF 714 (825)
Q Consensus 640 ~~~~~f~~~~~ig~G~~g~Vy~~~~~~---~g~~vAvK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~ 714 (825)
...++|...+.||+|+||.||+|++.. +++.||||+++... ....+.+.+|++++++++||||++++++|.....
T Consensus 31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~ 110 (313)
T 3brb_A 31 IDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSS 110 (313)
T ss_dssp CCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC---
T ss_pred cCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeeccc
Confidence 345678899999999999999998754 45689999997543 2334679999999999999999999999765322
Q ss_pred CCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeec
Q 003368 715 QGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLD 794 (825)
Q Consensus 715 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~ 794 (825)
.+....++||||+++|+|.+++..... ......+++.++..|+.|+++||+|||+. +|+||||||+||+++
T Consensus 111 ~~~~~~~~v~e~~~~~~L~~~l~~~~~------~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~ 181 (313)
T 3brb_A 111 QGIPKPMVILPFMKYGDLHTYLLYSRL------ETGPKHIPLQTLLKFMVDIALGMEYLSNR---NFLHRDLAARNCMLR 181 (313)
T ss_dssp ----CEEEEEECCTTCBHHHHHHHTTB------TTSCCCCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCSGGGEEEC
T ss_pred cCCcccEEEEecccCCCHHHHHHHhhh------hcCCccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEc
Confidence 222356999999999999999853211 11234689999999999999999999985 899999999999999
Q ss_pred CCCcEEEcccCcccccccC
Q 003368 795 NNLTAHVGDFGLARLRQEV 813 (825)
Q Consensus 795 ~~~~~ki~DFGla~~~~~~ 813 (825)
.++.+||+|||+++.....
T Consensus 182 ~~~~~kl~Dfg~~~~~~~~ 200 (313)
T 3brb_A 182 DDMTVCVADFGLSKKIYSG 200 (313)
T ss_dssp TTSCEEECSCSCC------
T ss_pred CCCcEEEeecCcceecccc
Confidence 9999999999999876543
No 234
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=99.90 E-value=1.5e-23 Score=221.32 Aligned_cols=151 Identities=25% Similarity=0.409 Sum_probs=132.9
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc---chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL---QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGND 718 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~---~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~ 718 (825)
.++|...+.||+|+||.||+|+...+++.||||++.... ....+.+.+|++++++++||||+++++++. +.+
T Consensus 13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~ 87 (284)
T 2vgo_A 13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFH-----DRK 87 (284)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSS
T ss_pred hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEE-----cCC
Confidence 357899999999999999999998899999999996542 223467899999999999999999999853 466
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..++||||+++|+|.+++.. ...+++..+..++.|+++|++|||+. +|+||||||+||+++.++.
T Consensus 88 ~~~lv~e~~~~~~L~~~l~~------------~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~ 152 (284)
T 2vgo_A 88 RIYLMLEFAPRGELYKELQK------------HGRFDEQRSATFMEELADALHYCHER---KVIHRDIKPENLLMGYKGE 152 (284)
T ss_dssp EEEEEECCCTTEEHHHHHHH------------HSSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTCC
T ss_pred EEEEEEEeCCCCcHHHHHHh------------cCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEEcCCCC
Confidence 78999999999999999842 24688999999999999999999985 9999999999999999999
Q ss_pred EEEcccCccccccc
Q 003368 799 AHVGDFGLARLRQE 812 (825)
Q Consensus 799 ~ki~DFGla~~~~~ 812 (825)
+||+|||+++....
T Consensus 153 ~kl~Dfg~~~~~~~ 166 (284)
T 2vgo_A 153 LKIADFGWSVHAPS 166 (284)
T ss_dssp EEECCCTTCEECSS
T ss_pred EEEecccccccCcc
Confidence 99999999986644
No 235
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=99.90 E-value=1.9e-23 Score=220.48 Aligned_cols=152 Identities=24% Similarity=0.388 Sum_probs=132.5
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc--hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCe
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ--GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDF 719 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~--~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~ 719 (825)
.++|+..+.||+|+||.||+|....+|+.||||++..... ...+.+.+|++++++++||||+++++++. .+..
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~ 79 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQ-----EESF 79 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----CSSE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEE-----cCCE
Confidence 4678999999999999999999988999999999976532 33467889999999999999999999853 4667
Q ss_pred eeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc-
Q 003368 720 KALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT- 798 (825)
Q Consensus 720 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~- 798 (825)
.++||||+++|+|.+++.. ...+++.++..++.|++.|++|||+. +|+||||||+||+++.++.
T Consensus 80 ~~~v~e~~~~~~l~~~~~~------------~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~ 144 (284)
T 3kk8_A 80 HYLVFDLVTGGELFEDIVA------------REFYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKG 144 (284)
T ss_dssp EEEEECCCCSCBHHHHHHH------------HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSTT
T ss_pred EEEEEecCCCCCHHHHHHh------------cCCCCHHHHHHHHHHHHHHHHHHHHC---CcCcCCCCHHHEEEecCCCC
Confidence 8999999999999988742 24689999999999999999999986 8999999999999986655
Q ss_pred --EEEcccCcccccccC
Q 003368 799 --AHVGDFGLARLRQEV 813 (825)
Q Consensus 799 --~ki~DFGla~~~~~~ 813 (825)
+||+|||+++.....
T Consensus 145 ~~~kl~Dfg~~~~~~~~ 161 (284)
T 3kk8_A 145 AAVKLADFGLAIEVNDS 161 (284)
T ss_dssp CCEEECCCTTCEECCSS
T ss_pred CcEEEeeceeeEEcccC
Confidence 999999999876544
No 236
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=99.90 E-value=6.7e-24 Score=232.13 Aligned_cols=152 Identities=22% Similarity=0.356 Sum_probs=133.5
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc-hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCee
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ-GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFK 720 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~-~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~ 720 (825)
.++|...+.||+|+||.||+|++..+|+.||||++..... ...+.+.+|++++++++||||+++++++. .++..
T Consensus 32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~~~~ 106 (360)
T 3eqc_A 32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFY-----SDGEI 106 (360)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEE-----ETTEE
T ss_pred cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEE-----ECCEE
Confidence 3568999999999999999999988999999999986533 34567999999999999999999999864 35678
Q ss_pred eEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcEE
Q 003368 721 ALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTAH 800 (825)
Q Consensus 721 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~k 800 (825)
++||||+++|+|.+++.. ...+++..+..++.|+++||+|||+. .+|+||||||+||+++.++.+|
T Consensus 107 ~lv~e~~~~~~L~~~l~~------------~~~~~~~~~~~i~~~i~~~l~~lh~~--~~i~H~dlkp~Nil~~~~~~~k 172 (360)
T 3eqc_A 107 SICMEHMDGGSLDQVLKK------------AGRIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIK 172 (360)
T ss_dssp EEEECCCTTCBHHHHHHH------------HSSCCHHHHHHHHHHHHHHHHHHHHH--HCCCCSCCSGGGEEECTTCCEE
T ss_pred EEEEECCCCCCHHHHHHH------------cCCCCHHHHHHHHHHHHHHHHHHHHh--CCEEcCCccHHHEEECCCCCEE
Confidence 999999999999999842 24688999999999999999999973 2799999999999999999999
Q ss_pred EcccCccccccc
Q 003368 801 VGDFGLARLRQE 812 (825)
Q Consensus 801 i~DFGla~~~~~ 812 (825)
|+|||+|+....
T Consensus 173 l~Dfg~~~~~~~ 184 (360)
T 3eqc_A 173 LCDFGVSGQLID 184 (360)
T ss_dssp ECCCCCCHHHHH
T ss_pred EEECCCCccccc
Confidence 999999986543
No 237
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=99.90 E-value=7.9e-24 Score=233.50 Aligned_cols=158 Identities=21% Similarity=0.296 Sum_probs=127.5
Q ss_pred hhcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeeccccccc-----
Q 003368 640 KATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDF----- 714 (825)
Q Consensus 640 ~~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~----- 714 (825)
...++|...+.||+|+||+||+|+...+|+.||||++..... ...+|+++++.++|||||++++++....-
T Consensus 4 ~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~----~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~ 79 (383)
T 3eb0_A 4 TSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR----YKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKP 79 (383)
T ss_dssp --CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHTTCCCTTBCCEEEEEEEC-------
T ss_pred cccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc----hHHHHHHHHHHcCCCCccchhheeeecCcccccc
Confidence 345789999999999999999999999999999999865432 23479999999999999999998743211
Q ss_pred ----------------------------CCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHH
Q 003368 715 ----------------------------QGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDV 766 (825)
Q Consensus 715 ----------------------------~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~v 766 (825)
.+..+.++||||++ |+|.+.+... ......+++..+..++.|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~--------~~~~~~l~~~~~~~i~~qi 150 (383)
T 3eb0_A 80 PQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSF--------IRSGRSIPMNLISIYIYQL 150 (383)
T ss_dssp ------------------------------CCEEEEEECCCS-EEHHHHHHHH--------HHTTCCCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHH--------HhcCCCCCHHHHHHHHHHH
Confidence 23445889999998 5887777421 1223568999999999999
Q ss_pred HHHHHHHHhcCCCCeeecCCCCCCeeec-CCCcEEEcccCcccccccC
Q 003368 767 ASAVDYLHHHCQEPTIHCDLKPSNILLD-NNLTAHVGDFGLARLRQEV 813 (825)
Q Consensus 767 a~~l~yLH~~~~~~ivHrdlk~~NILl~-~~~~~ki~DFGla~~~~~~ 813 (825)
++||+|||+. +|+||||||+||+++ .++.+||+|||+|+.....
T Consensus 151 ~~aL~~LH~~---gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~ 195 (383)
T 3eb0_A 151 FRAVGFIHSL---GICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPS 195 (383)
T ss_dssp HHHHHHHHTT---TEECSCCCGGGEEEETTTTEEEECCCTTCEECCTT
T ss_pred HHHHHHHHHC---cCccCccCHHHEEEcCCCCcEEEEECCCCcccCCC
Confidence 9999999985 999999999999998 6889999999999976543
No 238
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=1.4e-23 Score=215.37 Aligned_cols=198 Identities=16% Similarity=0.116 Sum_probs=171.6
Q ss_pred CcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCc-ccccCCccccCCCCCCEEECCC-CcCCCCCCcCCCCCCCCCEE
Q 003368 32 RRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNT-IQGKIPGEIGRLFRLEALYLSH-NSLVGEIPGNLSYCSRLIGL 109 (825)
Q Consensus 32 ~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L 109 (825)
..++.|++++|++.+..+..|..+++|++|++++|+ ++++.+.+|.++++|++|+|++ |+|++..+..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 579999999999998888899999999999999997 9988888999999999999999 99998888999999999999
Q ss_pred EcCCCCCCCCCChhhhcccccc---eeecccc-ccccccCccCCCCCCCC-EEEcccCcCcccCCcccccccccceecCc
Q 003368 110 YLGRNKLEGSIPSEFVSLYNLK---ELAIQEN-NLTGGIPHFLGNITSLE-AISLAYNSLGGNIPSSLGQLKELKSLGLG 184 (825)
Q Consensus 110 ~Ls~N~l~~~~p~~~~~l~~L~---~L~L~~N-~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 184 (825)
++++|++++ +|. |..+++|+ +|++++| ++++..+..|.++++|+ .|++++|+++...+..|.. ++|+.|
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L--- 184 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAV--- 184 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEE---
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEE---
Confidence 999999996 665 88999998 9999999 99988888899999999 9999999998444444444 677776
Q ss_pred CcCCccccCCCCCceeecCCcc-ccccCCchhhhcC-CCCcEEEcccccCCCCCCccccCCCCccEEEeeccc
Q 003368 185 GTIPPSIYNLSLLANFSVPENR-LHGSLPPSLGLTL-SNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNN 255 (825)
Q Consensus 185 ~~~p~~i~~l~~l~~l~l~~N~-l~~~lp~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 255 (825)
++++|+ ++ .+|+..+..+ ++|+.|++++|++++..+. .+++|+.|+++++.
T Consensus 185 ----------------~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 185 ----------------YLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp ----------------ECTTCTTCC-EECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred ----------------EcCCCCCcc-cCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 778884 77 5666666578 9999999999999965544 67788999988763
No 239
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=1.5e-25 Score=245.33 Aligned_cols=263 Identities=16% Similarity=0.164 Sum_probs=176.5
Q ss_pred EEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCC----cCCCCCC-CCCEEEcCCCCCCCCCChhhhcc-----cc
Q 003368 60 EIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIP----GNLSYCS-RLIGLYLGRNKLEGSIPSEFVSL-----YN 129 (825)
Q Consensus 60 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~ 129 (825)
+++|+.|.+++.+|..+....+|++|||++|.|++..+ ..|..++ +|++|+|++|+|++..+..|..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 57899999999999888888889999999999998777 7788898 89999999999998888888886 99
Q ss_pred cceeeccccccccccCccCC----CC-CCCCEEEcccCcCcccCCcccccc-----cccceecCcCcCCccccCCCCCce
Q 003368 130 LKELAIQENNLTGGIPHFLG----NI-TSLEAISLAYNSLGGNIPSSLGQL-----KELKSLGLGGTIPPSIYNLSLLAN 199 (825)
Q Consensus 130 L~~L~L~~N~l~~~~p~~~~----~l-~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~L~~~~p~~i~~l~~l~~ 199 (825)
|++|+|++|++++..+..+. .+ ++|++|+|++|++++..+..+... ++|++|
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L------------------ 143 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL------------------ 143 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEE------------------
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEE------------------
Confidence 99999999999977766444 44 899999999999987666554431 344444
Q ss_pred eecCCccccccCC----chhhhcCC-CCcEEEcccccCCCCCCccc----cCC-CCccEEEeecccccCccccCcCCCCC
Q 003368 200 FSVPENRLHGSLP----PSLGLTLS-NLQLFQISNNFFSGSFPLAF----SNA-SNLQSLEILGNNFFGKLSVNFGDMKS 269 (825)
Q Consensus 200 l~l~~N~l~~~lp----~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~----~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~ 269 (825)
++++|.+++..+ ..+. .++ +|++|+|++|++++..+..+ ..+ ++|++|+|++|.+......
T Consensus 144 -~Ls~N~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~------- 214 (362)
T 3goz_A 144 -NLRGNDLGIKSSDELIQILA-AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYA------- 214 (362)
T ss_dssp -ECTTSCGGGSCHHHHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH-------
T ss_pred -EccCCcCCHHHHHHHHHHHh-cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHH-------
Confidence 777777774332 2222 343 78888888888877665443 334 4788888888877652111
Q ss_pred CcEEEcccccCCCCCCCcccccccccc-CCCCCEEEcccccccccCCCCcccccCCccccCCCCcCEEEcccCccccc--
Q 003368 270 LAYLNVAINNLGSGESDEMSFIHSLAN-CSNLSFLNLVANQFKGALPHSIVSGSIPSEIGKLVSLYLIEMDHNQFEGK-- 346 (825)
Q Consensus 270 L~~L~ls~N~l~~~~~~~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l~~l~~L~~L~L~~N~l~~~-- 346 (825)
.++..+.. .++|+.|+|++|.+++..+. .+...+..+++|+.|+|++|.+.+.
T Consensus 215 -------------------~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-----~l~~~~~~l~~L~~L~L~~n~l~~i~~ 270 (362)
T 3goz_A 215 -------------------ELAYIFSSIPNHVVSLNLCLNCLHGPSLE-----NLKLLKDSLKHLQTVYLDYDIVKNMSK 270 (362)
T ss_dssp -------------------HHHHHHHHSCTTCCEEECCSSCCCCCCHH-----HHHHTTTTTTTCSEEEEEHHHHTTCCH
T ss_pred -------------------HHHHHHhcCCCCceEEECcCCCCCcHHHH-----HHHHHHhcCCCccEEEeccCCccccCH
Confidence 11222222 23555555555555431100 1112234455566666666653322
Q ss_pred -----CCccccCCCCCCEEEccccccccccCc
Q 003368 347 -----IPEEMSRLQNLQFLNMRHNQLSGEIPS 373 (825)
Q Consensus 347 -----~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 373 (825)
++..+..+++|++||+++|++.+..+.
T Consensus 271 ~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 271 EQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp HHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred HHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 223455667777777777777655443
No 240
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=99.90 E-value=1.2e-23 Score=220.17 Aligned_cols=152 Identities=28% Similarity=0.458 Sum_probs=121.5
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc----hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ----GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGN 717 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~----~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 717 (825)
.++|+..+.||+|+||.||+|++ .|+.||||++..... ...+.+.+|+++++.++||||++++++|. .+
T Consensus 6 ~~~~~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~ 78 (271)
T 3dtc_A 6 FAELTLEEIIGIGGFGKVYRAFW--IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCL-----KE 78 (271)
T ss_dssp TTSEEEEEEEEEETTEEEEEEEE--TTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEEC-----CC
T ss_pred hhheeeeeeeccCCCeEEEEEEE--cCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEe-----cC
Confidence 35788899999999999999998 489999999875432 23467899999999999999999999864 35
Q ss_pred CeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecC--
Q 003368 718 DFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDN-- 795 (825)
Q Consensus 718 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~-- 795 (825)
+..++||||+++|+|.+++.. ..+++..+..++.|+++|++|||+....+|+||||||+||+++.
T Consensus 79 ~~~~lv~e~~~~~~L~~~~~~-------------~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~ 145 (271)
T 3dtc_A 79 PNLCLVMEFARGGPLNRVLSG-------------KRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKV 145 (271)
T ss_dssp --CEEEEECCTTEEHHHHHTS-------------SCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCC
T ss_pred CceEEEEEcCCCCCHHHHhhc-------------CCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEeccc
Confidence 678999999999999999842 25889999999999999999999973334999999999999986
Q ss_pred ------CCcEEEcccCcccccccC
Q 003368 796 ------NLTAHVGDFGLARLRQEV 813 (825)
Q Consensus 796 ------~~~~ki~DFGla~~~~~~ 813 (825)
++.+||+|||+++.....
T Consensus 146 ~~~~~~~~~~kl~Dfg~~~~~~~~ 169 (271)
T 3dtc_A 146 ENGDLSNKILKITDFGLAREWHRT 169 (271)
T ss_dssp SSSCCSSCCEEECCCCC-------
T ss_pred ccccccCcceEEccCCcccccccc
Confidence 678999999999876543
No 241
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=99.90 E-value=5.1e-24 Score=239.99 Aligned_cols=152 Identities=32% Similarity=0.543 Sum_probs=129.5
Q ss_pred hhcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCe
Q 003368 640 KATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDF 719 (825)
Q Consensus 640 ~~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~ 719 (825)
...++|...+.||+|+||.||+|++. .+..||||+++... ...++|.+|++++++++|||||+++++|. .+.
T Consensus 181 i~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~------~~~ 252 (452)
T 1fmk_A 181 IPRESLRLEVKLGQGCFGEVWMGTWN-GTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVS------EEP 252 (452)
T ss_dssp CCGGGEEEEEEEEECSSCEEEEEEET-TTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEEC------SSS
T ss_pred cChhHceeeeeecCCCCeEEEEEEEC-CCceEEEEEeccCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEc------CCc
Confidence 34567888999999999999999994 56789999997653 23578999999999999999999999863 245
Q ss_pred eeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcE
Q 003368 720 KALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTA 799 (825)
Q Consensus 720 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ 799 (825)
.++||||+++|+|.+++.. .....+++.++..++.|+++||+|||+. +|+||||||+|||+++++.+
T Consensus 253 ~~iv~e~~~~gsL~~~l~~----------~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~ 319 (452)
T 1fmk_A 253 IYIVTEYMSKGSLLDFLKG----------ETGKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVC 319 (452)
T ss_dssp CEEEECCCTTCBHHHHHSH----------HHHTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCE
T ss_pred eEEEehhhcCCCHHHHHHh----------cCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEECCCCCE
Confidence 7999999999999999952 1224589999999999999999999985 89999999999999999999
Q ss_pred EEcccCccccccc
Q 003368 800 HVGDFGLARLRQE 812 (825)
Q Consensus 800 ki~DFGla~~~~~ 812 (825)
||+|||+|+....
T Consensus 320 kl~DfG~a~~~~~ 332 (452)
T 1fmk_A 320 KVADFGLARLIED 332 (452)
T ss_dssp EECCCCTTC----
T ss_pred EECCCccceecCC
Confidence 9999999998754
No 242
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=99.90 E-value=1.3e-23 Score=226.34 Aligned_cols=154 Identities=28% Similarity=0.521 Sum_probs=133.3
Q ss_pred ccccccceeccCCeeEEEEEEE----cCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCC
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTF----DRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGND 718 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~----~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~ 718 (825)
++|+..+.||+|+||.||+|++ ..+|+.||||++........+.+.+|++++++++||||++++++|.. .+..
T Consensus 41 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~---~~~~ 117 (326)
T 2w1i_A 41 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYS---AGRR 117 (326)
T ss_dssp GGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC-------
T ss_pred HHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEe---cCCC
Confidence 4588899999999999999994 46899999999987666667789999999999999999999998643 2234
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..++||||+++|+|.+++... ...+++.++..++.|+++||+|||+. +|+||||||+||+++.++.
T Consensus 118 ~~~lv~e~~~~~~L~~~l~~~-----------~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~ 183 (326)
T 2w1i_A 118 NLKLIMEYLPYGSLRDYLQKH-----------KERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENR 183 (326)
T ss_dssp CCEEEECCCTTCBHHHHHHHS-----------TTSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTE
T ss_pred ceEEEEECCCCCCHHHHHHhc-----------ccCCCHHHHHHHHHHHHHHHHHHHhC---CEeccCCCcceEEEcCCCc
Confidence 679999999999999998532 23589999999999999999999985 9999999999999999999
Q ss_pred EEEcccCcccccccC
Q 003368 799 AHVGDFGLARLRQEV 813 (825)
Q Consensus 799 ~ki~DFGla~~~~~~ 813 (825)
+||+|||+|+.....
T Consensus 184 ~kL~Dfg~~~~~~~~ 198 (326)
T 2w1i_A 184 VKIGDFGLTKVLPQD 198 (326)
T ss_dssp EEECCCTTCEECCSS
T ss_pred EEEecCcchhhcccc
Confidence 999999999987554
No 243
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=99.90 E-value=7e-24 Score=232.24 Aligned_cols=156 Identities=17% Similarity=0.287 Sum_probs=127.5
Q ss_pred cccccccceeccCCeeEEEEEEEcCC-----CeEEEEEEeecccchh-----------HHHHHHHHHHhhcCCCCCceeE
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRD-----GTIVAIKVLNLQLQGA-----------SKSFAAECRALRNIRHRNLVRV 705 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~-----g~~vAvK~~~~~~~~~-----------~~~~~~E~~~l~~l~H~niv~l 705 (825)
.++|...+.||+|+||.||+|++..+ ++.||||++....... ...+..|+..++.++||||+++
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~ 113 (364)
T 3op5_A 34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKY 113 (364)
T ss_dssp CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCE
T ss_pred CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeE
Confidence 45799999999999999999998654 5789999987653211 1234567777888999999999
Q ss_pred eecccccccCCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecC
Q 003368 706 ITSCSSIDFQGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCD 785 (825)
Q Consensus 706 ~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrd 785 (825)
+++|... ..+....++||||+ +|+|.+++.. ....++|.++..|+.|++.||+|||+. +|+|||
T Consensus 114 ~~~~~~~-~~~~~~~~lv~e~~-g~~L~~~~~~-----------~~~~l~~~~~~~i~~qi~~~l~~lH~~---~iiHrD 177 (364)
T 3op5_A 114 WGSGLHD-KNGKSYRFMIMDRF-GSDLQKIYEA-----------NAKRFSRKTVLQLSLRILDILEYIHEH---EYVHGD 177 (364)
T ss_dssp EEEEEEE-ETTEEEEEEEEECE-EEEHHHHHHH-----------TTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCC
T ss_pred Eeeeeec-cCCcceEEEEEeCC-CCCHHHHHHh-----------ccCCCCHHHHHHHHHHHHHHHHHHHHC---CeEEec
Confidence 9997642 12235689999999 9999999842 224689999999999999999999986 999999
Q ss_pred CCCCCeeec--CCCcEEEcccCcccccccC
Q 003368 786 LKPSNILLD--NNLTAHVGDFGLARLRQEV 813 (825)
Q Consensus 786 lk~~NILl~--~~~~~ki~DFGla~~~~~~ 813 (825)
|||+|||++ .++.+||+|||+|+.+...
T Consensus 178 lkp~Nill~~~~~~~~kl~DFG~a~~~~~~ 207 (364)
T 3op5_A 178 IKASNLLLNYKNPDQVYLVDYGLAYRYCPE 207 (364)
T ss_dssp CCGGGEEEESSCTTCEEECCCTTCEESSGG
T ss_pred CCHHHEEEecCCCCeEEEEECCcceecccC
Confidence 999999999 8899999999999877543
No 244
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=99.90 E-value=8.4e-24 Score=223.05 Aligned_cols=154 Identities=28% Similarity=0.482 Sum_probs=131.9
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeeccccccc--------
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDF-------- 714 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~-------- 714 (825)
.+|+..+.||+|+||.||+|++..+|+.||||++.... +.+.+|++++++++||||+++++++....+
T Consensus 11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~ 86 (284)
T 2a19_B 11 MDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKN 86 (284)
T ss_dssp HHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC-------
T ss_pred cccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccccc
Confidence 46889999999999999999998899999999997543 356789999999999999999998643211
Q ss_pred ---CCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCe
Q 003368 715 ---QGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNI 791 (825)
Q Consensus 715 ---~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NI 791 (825)
......++||||+++|+|.+++... ....+++..+..++.|+++||+|||+. +|+||||||+||
T Consensus 87 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~----------~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Ni 153 (284)
T 2a19_B 87 SSRSKTKCLFIQMEFCDKGTLEQWIEKR----------RGEKLDKVLALELFEQITKGVDYIHSK---KLINRDLKPSNI 153 (284)
T ss_dssp --CCEEEEEEEEECCCCSCBHHHHHHHG----------GGSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGE
T ss_pred ccccCcceEEEEEeccCCCCHHHHHhhc----------cCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHE
Confidence 1234579999999999999998421 224689999999999999999999986 999999999999
Q ss_pred eecCCCcEEEcccCcccccccC
Q 003368 792 LLDNNLTAHVGDFGLARLRQEV 813 (825)
Q Consensus 792 Ll~~~~~~ki~DFGla~~~~~~ 813 (825)
++++++.+||+|||+++.....
T Consensus 154 l~~~~~~~kl~Dfg~~~~~~~~ 175 (284)
T 2a19_B 154 FLVDTKQVKIGDFGLVTSLKND 175 (284)
T ss_dssp EEEETTEEEECCCTTCEESSCC
T ss_pred EEcCCCCEEECcchhheecccc
Confidence 9999999999999999887554
No 245
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=99.90 E-value=1.2e-23 Score=224.50 Aligned_cols=150 Identities=27% Similarity=0.404 Sum_probs=129.7
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCeeeE
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFKAL 722 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~~l 722 (825)
++|...+.||+|+||.||+|+...+|+.||||++........+.+.+|++++++++||||+++++++. +.+..++
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~~~l 83 (304)
T 2jam_A 9 KTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYE-----STTHYYL 83 (304)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEE-----CSSEEEE
T ss_pred ccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcc-----cCCEEEE
Confidence 46888999999999999999998899999999998665445567899999999999999999999853 4667899
Q ss_pred EEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeee---cCCCcE
Q 003368 723 VYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILL---DNNLTA 799 (825)
Q Consensus 723 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl---~~~~~~ 799 (825)
||||+++|+|.+++.. ...+++.++..++.|++.||+|||+. +|+||||||+||++ +.++.+
T Consensus 84 v~e~~~~~~L~~~l~~------------~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dikp~NIl~~~~~~~~~~ 148 (304)
T 2jam_A 84 VMQLVSGGELFDRILE------------RGVYTEKDASLVIQQVLSAVKYLHEN---GIVHRDLKPENLLYLTPEENSKI 148 (304)
T ss_dssp EECCCCSCBHHHHHHH------------HSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCSCCGGGCEESSSSTTCCE
T ss_pred EEEcCCCccHHHHHHH------------cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEecCCCCCCE
Confidence 9999999999998842 24688999999999999999999986 99999999999999 788999
Q ss_pred EEcccCccccccc
Q 003368 800 HVGDFGLARLRQE 812 (825)
Q Consensus 800 ki~DFGla~~~~~ 812 (825)
||+|||+++....
T Consensus 149 kl~Dfg~~~~~~~ 161 (304)
T 2jam_A 149 MITDFGLSKMEQN 161 (304)
T ss_dssp EBCSCSTTCCCCC
T ss_pred EEccCCcceecCC
Confidence 9999999987543
No 246
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=99.90 E-value=1.7e-23 Score=219.83 Aligned_cols=151 Identities=29% Similarity=0.492 Sum_probs=133.4
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc---chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL---QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGND 718 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~---~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~ 718 (825)
.++|...+.||+|+||.||+|++..+|+.||||++.... ....+.+.+|++++++++||||+++++++. ..+
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~ 84 (276)
T 2h6d_A 10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVIS-----TPT 84 (276)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSS
T ss_pred eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEe-----cCC
Confidence 357889999999999999999998899999999997542 223567899999999999999999999853 356
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..++||||+++++|.+++.. ...+++.++..++.|+++||+|||+. +|+||||||+||+++.++.
T Consensus 85 ~~~lv~e~~~~~~L~~~l~~------------~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~ 149 (276)
T 2h6d_A 85 DFFMVMEYVSGGELFDYICK------------HGRVEEMEARRLFQQILSAVDYCHRH---MVVHRDLKPENVLLDAHMN 149 (276)
T ss_dssp EEEEEEECCCSCBHHHHHHH------------HCSCCHHHHHHHHHHHHHHHHHHHHH---CSSCCCCCGGGEEECTTSC
T ss_pred eEEEEEeccCCCcHHHHHhc------------cCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChhhEEECCCCC
Confidence 78999999999999999842 24688999999999999999999986 8999999999999999999
Q ss_pred EEEcccCccccccc
Q 003368 799 AHVGDFGLARLRQE 812 (825)
Q Consensus 799 ~ki~DFGla~~~~~ 812 (825)
+||+|||+++....
T Consensus 150 ~~l~dfg~~~~~~~ 163 (276)
T 2h6d_A 150 AKIADFGLSNMMSD 163 (276)
T ss_dssp EEECCCCGGGCCCC
T ss_pred EEEeecccccccCC
Confidence 99999999987654
No 247
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=99.90 E-value=1.6e-23 Score=227.65 Aligned_cols=166 Identities=24% Similarity=0.439 Sum_probs=132.3
Q ss_pred hcccccccceeccCCeeEEEEEEE-----cCCCeEEEEEEeeccc-chhHHHHHHHHHHhhcC-CCCCceeEeecccccc
Q 003368 641 ATDGFSSTHLIGIGSFGSVYKGTF-----DRDGTIVAIKVLNLQL-QGASKSFAAECRALRNI-RHRNLVRVITSCSSID 713 (825)
Q Consensus 641 ~~~~f~~~~~ig~G~~g~Vy~~~~-----~~~g~~vAvK~~~~~~-~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~ 713 (825)
..++|...+.||+|+||.||+|++ ..+++.||||++.... ....+.+.+|+++++++ +||||++++++|.
T Consensus 43 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~--- 119 (344)
T 1rjb_A 43 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACT--- 119 (344)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEC---
T ss_pred CHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEe---
Confidence 457789999999999999999997 2466789999997543 23456799999999999 8999999999864
Q ss_pred cCCCCeeeEEEEccCCCChhhhccCCCCCCCc-----------ccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCee
Q 003368 714 FQGNDFKALVYQYMPNGSLENWLHPDAIPQTD-----------EENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTI 782 (825)
Q Consensus 714 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~-----------~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~iv 782 (825)
..+..++||||+++|+|.+++......... ........++|.++..++.|+++||+|||+. +|+
T Consensus 120 --~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~iv 194 (344)
T 1rjb_A 120 --LSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK---SCV 194 (344)
T ss_dssp --SSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT---TEE
T ss_pred --eCCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhC---Ccc
Confidence 356789999999999999999754211100 0011124589999999999999999999985 999
Q ss_pred ecCCCCCCeeecCCCcEEEcccCcccccccCC
Q 003368 783 HCDLKPSNILLDNNLTAHVGDFGLARLRQEVP 814 (825)
Q Consensus 783 Hrdlk~~NILl~~~~~~ki~DFGla~~~~~~~ 814 (825)
||||||+||+++.++.+||+|||+|+......
T Consensus 195 H~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~ 226 (344)
T 1rjb_A 195 HRDLAARNVLVTHGKVVKICDFGLARDIMSDS 226 (344)
T ss_dssp ETTCSGGGEEEETTTEEEECCCGGGSCGGGCT
T ss_pred cCCCChhhEEEcCCCcEEeCCCccCcccccCc
Confidence 99999999999999999999999999775543
No 248
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=99.90 E-value=1.1e-23 Score=240.05 Aligned_cols=161 Identities=24% Similarity=0.378 Sum_probs=135.0
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc--chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCee
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL--QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFK 720 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~ 720 (825)
++|...+.||+|+||+||+|+...+|+.||||++.... ....+.+.+|++++++++|||||++++++. .....
T Consensus 22 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~-----~~~~~ 96 (486)
T 3mwu_A 22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILE-----DSSSF 96 (486)
T ss_dssp HHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----CSSEE
T ss_pred cceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEE-----cCCEE
Confidence 46888999999999999999998899999999996542 234578899999999999999999999853 46788
Q ss_pred eEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeec---CCC
Q 003368 721 ALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLD---NNL 797 (825)
Q Consensus 721 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~---~~~ 797 (825)
++||||+++|+|.+++.. ...+++.++..|+.|++.||+|||+. +|+||||||+|||++ .++
T Consensus 97 ~lv~e~~~~~~L~~~~~~------------~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~~ 161 (486)
T 3mwu_A 97 YIVGELYTGGELFDEIIK------------RKRFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDC 161 (486)
T ss_dssp EEEECCCCSCBHHHHHHH------------HSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEESSSSTTC
T ss_pred EEEEEcCCCCcHHHHHHh------------cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCC
Confidence 999999999999988842 24689999999999999999999986 899999999999995 456
Q ss_pred cEEEcccCcccccccCCCCCccccccC
Q 003368 798 TAHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 798 ~~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
.+||+|||+|+...... .....+||+
T Consensus 162 ~~kl~Dfg~a~~~~~~~-~~~~~~gt~ 187 (486)
T 3mwu_A 162 DIKIIDFGLSTCFQQNT-KMKDRIGTA 187 (486)
T ss_dssp CEEECSCSCTTTBCCC-----CCTTGG
T ss_pred CEEEEECCcCeECCCCC-ccCCCcCCC
Confidence 89999999999765432 233445554
No 249
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=99.90 E-value=7.4e-24 Score=232.22 Aligned_cols=151 Identities=30% Similarity=0.493 Sum_probs=122.3
Q ss_pred cccccceeccCCeeEEEEEEEcCC---CeEEEEEEeeccc-chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCe
Q 003368 644 GFSSTHLIGIGSFGSVYKGTFDRD---GTIVAIKVLNLQL-QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDF 719 (825)
Q Consensus 644 ~f~~~~~ig~G~~g~Vy~~~~~~~---g~~vAvK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~ 719 (825)
.|...+.||+|+||.||+|++..+ +..||||.++... ....+.|.+|++++++++|||||+++++|.. .++.
T Consensus 90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~----~~~~ 165 (373)
T 3c1x_A 90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLR----SEGS 165 (373)
T ss_dssp EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECC----CSSC
T ss_pred eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEc----CCCC
Confidence 366778999999999999997433 2468999987543 3445789999999999999999999998743 3456
Q ss_pred eeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcE
Q 003368 720 KALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTA 799 (825)
Q Consensus 720 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ 799 (825)
.++||||+++|+|.+++... ...+++.++..++.|+++||+|||+. +|+||||||+|||++.++.+
T Consensus 166 ~~lv~e~~~~g~L~~~l~~~-----------~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~ 231 (373)
T 3c1x_A 166 PLVVLPYMKHGDLRNFIRNE-----------THNPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTV 231 (373)
T ss_dssp CEEEEECCTTCBHHHHHHCT-----------TCCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCE
T ss_pred eEEEEECCCCCCHHHHHhhc-----------ccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCccchheEEECCCCCE
Confidence 79999999999999999532 23578899999999999999999986 99999999999999999999
Q ss_pred EEcccCccccccc
Q 003368 800 HVGDFGLARLRQE 812 (825)
Q Consensus 800 ki~DFGla~~~~~ 812 (825)
||+|||+|+....
T Consensus 232 kL~DFG~a~~~~~ 244 (373)
T 3c1x_A 232 KVADFGLARDMYD 244 (373)
T ss_dssp EECCC--------
T ss_pred EEeeccccccccc
Confidence 9999999987644
No 250
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=99.90 E-value=9.9e-24 Score=222.27 Aligned_cols=152 Identities=25% Similarity=0.408 Sum_probs=122.8
Q ss_pred cccccccceeccCCeeEEEEEEEcC---CCeEEEEEEeecccc-hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDR---DGTIVAIKVLNLQLQ-GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGN 717 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~---~g~~vAvK~~~~~~~-~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 717 (825)
.++|+..+.||+|+||.||+|++.. .+..||||.+..... ...+.+.+|+.++++++||||+++++++. +
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~------~ 87 (281)
T 1mp8_A 14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT------E 87 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC------S
T ss_pred hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc------c
Confidence 4578889999999999999999854 356799999875432 34567999999999999999999999852 3
Q ss_pred CeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCC
Q 003368 718 DFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNL 797 (825)
Q Consensus 718 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~ 797 (825)
+..++||||+++|+|.+++... ...+++.++..++.|+++||+|||+. +|+||||||+||+++.++
T Consensus 88 ~~~~lv~e~~~~~~L~~~l~~~-----------~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~ 153 (281)
T 1mp8_A 88 NPVWIIMELCTLGELRSFLQVR-----------KYSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSND 153 (281)
T ss_dssp SSCEEEEECCTTEEHHHHHHHT-----------TTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETT
T ss_pred CccEEEEecCCCCCHHHHHHhc-----------CCCCCHHHHHHHHHHHHHHHHHHHhC---CeecccccHHHEEECCCC
Confidence 4578999999999999998522 23589999999999999999999986 999999999999999999
Q ss_pred cEEEcccCcccccccC
Q 003368 798 TAHVGDFGLARLRQEV 813 (825)
Q Consensus 798 ~~ki~DFGla~~~~~~ 813 (825)
.+||+|||+|+.....
T Consensus 154 ~~kl~Dfg~~~~~~~~ 169 (281)
T 1mp8_A 154 CVKLGDFGLSRYMEDS 169 (281)
T ss_dssp EEEECC----------
T ss_pred CEEECccccccccCcc
Confidence 9999999999987543
No 251
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=99.90 E-value=8.1e-24 Score=241.02 Aligned_cols=161 Identities=24% Similarity=0.410 Sum_probs=137.3
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc---chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCe
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL---QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDF 719 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~---~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~ 719 (825)
+.|...++||+|+||.||+|+...+|+.||||++.... ....+.+.+|++++++++|||||++++++ .....
T Consensus 26 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~-----~~~~~ 100 (484)
T 3nyv_A 26 DRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFF-----EDKGY 100 (484)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEE-----ECSSE
T ss_pred CceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEE-----EeCCE
Confidence 46888999999999999999998899999999997543 23467899999999999999999999985 34678
Q ss_pred eeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeee---cCC
Q 003368 720 KALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILL---DNN 796 (825)
Q Consensus 720 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl---~~~ 796 (825)
.++||||+++|+|.+++... ..+++.++..|+.|++.||+|||+. +|+||||||+|||+ +.+
T Consensus 101 ~~lv~e~~~~~~L~~~~~~~------------~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~ 165 (484)
T 3nyv_A 101 FYLVGEVYTGGELFDEIISR------------KRFSEVDAARIIRQVLSGITYMHKN---KIVHRDLKPENLLLESKSKD 165 (484)
T ss_dssp EEEEECCCCSCBHHHHHHTC------------SCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTT
T ss_pred EEEEEecCCCCCHHHHHHhc------------CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEecCCCC
Confidence 89999999999999988532 3688999999999999999999996 89999999999999 467
Q ss_pred CcEEEcccCcccccccCCCCCccccccC
Q 003368 797 LTAHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 797 ~~~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
+.+||+|||+|+...... .....+||+
T Consensus 166 ~~~kl~Dfg~a~~~~~~~-~~~~~~gt~ 192 (484)
T 3nyv_A 166 ANIRIIDFGLSTHFEASK-KMKDKIGTA 192 (484)
T ss_dssp CCEEECCTTHHHHBCCCC-SHHHHTTGG
T ss_pred CcEEEEeeeeeEEccccc-ccccCCCCc
Confidence 899999999998775542 233445554
No 252
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=99.90 E-value=1.6e-23 Score=223.99 Aligned_cols=152 Identities=22% Similarity=0.283 Sum_probs=129.2
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc---hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ---GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGND 718 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~---~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~ 718 (825)
.++|...+.||+|+||.||+|+...+++.||||++..... ...+.+.+|++++++++||||+++++++. .++
T Consensus 33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~-----~~~ 107 (309)
T 2h34_A 33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGE-----IDG 107 (309)
T ss_dssp -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEE-----ETT
T ss_pred eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEe-----eCC
Confidence 4679999999999999999999988999999999975532 22467899999999999999999999864 356
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..++||||+++++|.+++.. ...+++.++..++.|+++||+|||+. +|+||||||+||+++.++.
T Consensus 108 ~~~lv~e~~~~~~L~~~l~~------------~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~NIl~~~~~~ 172 (309)
T 2h34_A 108 QLYVDMRLINGVDLAAMLRR------------QGPLAPPRAVAIVRQIGSALDAAHAA---GATHRDVKPENILVSADDF 172 (309)
T ss_dssp EEEEEEECCCCEEHHHHHHH------------HCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSC
T ss_pred eEEEEEEecCCCCHHHHHHh------------cCCCCHHHHHHHHHHHHHHHHHHHHC---cCCcCCCChHHEEEcCCCC
Confidence 78999999999999999842 24689999999999999999999986 8999999999999999999
Q ss_pred EEEcccCcccccccC
Q 003368 799 AHVGDFGLARLRQEV 813 (825)
Q Consensus 799 ~ki~DFGla~~~~~~ 813 (825)
+||+|||+++.....
T Consensus 173 ~kl~Dfg~~~~~~~~ 187 (309)
T 2h34_A 173 AYLVDFGIASATTDE 187 (309)
T ss_dssp EEECSCCC-------
T ss_pred EEEecCccCcccccc
Confidence 999999999876543
No 253
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=99.90 E-value=1.6e-23 Score=224.36 Aligned_cols=162 Identities=27% Similarity=0.397 Sum_probs=132.6
Q ss_pred hcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCee
Q 003368 641 ATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFK 720 (825)
Q Consensus 641 ~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~ 720 (825)
..+.|+..+.||+|+||.||+|+...+|+.||||++.... ..+.+.+|++++++++||||+++++++.. .+..
T Consensus 27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~ 99 (314)
T 3com_A 27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFK-----NTDL 99 (314)
T ss_dssp ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEE-----TTEE
T ss_pred chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEe-----CCEE
Confidence 3467899999999999999999998889999999997643 34678999999999999999999998643 5678
Q ss_pred eEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcEE
Q 003368 721 ALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTAH 800 (825)
Q Consensus 721 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~k 800 (825)
++||||+++|+|.+++.. ....+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+|
T Consensus 100 ~lv~e~~~~~~L~~~~~~-----------~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~k 165 (314)
T 3com_A 100 WIVMEYCGAGSVSDIIRL-----------RNKTLTEDEIATILQSTLKGLEYLHFM---RKIHRDIKAGNILLNTEGHAK 165 (314)
T ss_dssp EEEEECCTTEEHHHHHHH-----------HTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEE
T ss_pred EEEeecCCCCCHHHHHHh-----------cCCCCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCcCHHHEEECCCCCEE
Confidence 999999999999999841 224689999999999999999999986 899999999999999999999
Q ss_pred EcccCcccccccCCCCCcccccc
Q 003368 801 VGDFGLARLRQEVPNNQSSSVGD 823 (825)
Q Consensus 801 i~DFGla~~~~~~~~~~~~~~gt 823 (825)
|+|||+++.............||
T Consensus 166 l~dfg~~~~~~~~~~~~~~~~~~ 188 (314)
T 3com_A 166 LADFGVAGQLTDTMAKRNTVIGT 188 (314)
T ss_dssp ECCCTTCEECBTTBSCBCCCCSC
T ss_pred EeecccchhhhhhccccCccCCC
Confidence 99999998775543333333444
No 254
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=99.90 E-value=1.9e-23 Score=226.01 Aligned_cols=164 Identities=23% Similarity=0.437 Sum_probs=132.3
Q ss_pred cccccccceeccCCeeEEEEEEEc-------CCCeEEEEEEeecccc-hhHHHHHHHHHHhhcC-CCCCceeEeeccccc
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFD-------RDGTIVAIKVLNLQLQ-GASKSFAAECRALRNI-RHRNLVRVITSCSSI 712 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~-------~~g~~vAvK~~~~~~~-~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~ 712 (825)
.++|...+.||+|+||.||+|++. .+++.||||++..... ...+.+.+|+++++++ +||||++++++|.
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~-- 111 (334)
T 2pvf_A 34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACT-- 111 (334)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC--
T ss_pred HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEc--
Confidence 467889999999999999999974 3577899999976533 3456789999999999 8999999999864
Q ss_pred ccCCCCeeeEEEEccCCCChhhhccCCCCCCCcc----cchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCC
Q 003368 713 DFQGNDFKALVYQYMPNGSLENWLHPDAIPQTDE----ENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKP 788 (825)
Q Consensus 713 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~----~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~ 788 (825)
..+..++||||+++|+|.+++.......... .......+++.++..++.|+++||+|||+. +|+||||||
T Consensus 112 ---~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp 185 (334)
T 2pvf_A 112 ---QDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAA 185 (334)
T ss_dssp ---SSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSG
T ss_pred ---cCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCcc
Confidence 3567899999999999999997542111000 001123589999999999999999999986 999999999
Q ss_pred CCeeecCCCcEEEcccCcccccccC
Q 003368 789 SNILLDNNLTAHVGDFGLARLRQEV 813 (825)
Q Consensus 789 ~NILl~~~~~~ki~DFGla~~~~~~ 813 (825)
+||+++.++.+||+|||+|+.....
T Consensus 186 ~NIll~~~~~~kL~Dfg~~~~~~~~ 210 (334)
T 2pvf_A 186 RNVLVTENNVMKIADFGLARDINNI 210 (334)
T ss_dssp GGEEECTTCCEEECCCTTCEECTTT
T ss_pred ceEEEcCCCCEEEcccccccccccc
Confidence 9999999999999999999876543
No 255
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=99.90 E-value=1.4e-23 Score=229.69 Aligned_cols=164 Identities=24% Similarity=0.284 Sum_probs=133.8
Q ss_pred ccHHHHHhhcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccch-----------hHHHHHHHHHHhhcCCCCC
Q 003368 633 VSYESLLKATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQG-----------ASKSFAAECRALRNIRHRN 701 (825)
Q Consensus 633 ~~~~~~~~~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~-----------~~~~~~~E~~~l~~l~H~n 701 (825)
....++....++|...+.||+|+||.||+|.. .+|+.||||++...... ..+.+.+|++++++++|||
T Consensus 12 ~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ 90 (362)
T 3pg1_A 12 DLIAELHAMQSPYTVQRFISSGSYGAVCAGVD-SEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPN 90 (362)
T ss_dssp HHHHHHHHTTCSCEEEEEEEEETTEEEEEEEC-TTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTT
T ss_pred HHHHHHHHhccceEEeEEeccCCCEEEEEEEC-CCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcC
Confidence 34556777789999999999999999999998 46999999998653221 2367999999999999999
Q ss_pred ceeEeecccccccCCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCe
Q 003368 702 LVRVITSCSSIDFQGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPT 781 (825)
Q Consensus 702 iv~l~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~i 781 (825)
|+++++++...........++||||++ |+|.+++... ...+++..+..++.|+++||+|||+. +|
T Consensus 91 iv~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~-----------~~~~~~~~~~~~~~qi~~~l~~lH~~---~i 155 (362)
T 3pg1_A 91 ILGLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQ-----------RIVISPQHIQYFMYHILLGLHVLHEA---GV 155 (362)
T ss_dssp BCCCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCT-----------TSCCCHHHHHHHHHHHHHHHHHHHHT---TC
T ss_pred ccceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhc-----------ccCCCHHHHHHHHHHHHHHHHHHHHC---cC
Confidence 999999875433234457899999998 6888887532 23689999999999999999999996 89
Q ss_pred eecCCCCCCeeecCCCcEEEcccCccccccc
Q 003368 782 IHCDLKPSNILLDNNLTAHVGDFGLARLRQE 812 (825)
Q Consensus 782 vHrdlk~~NILl~~~~~~ki~DFGla~~~~~ 812 (825)
+||||||+||+++.++.+||+|||+|+....
T Consensus 156 vH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~ 186 (362)
T 3pg1_A 156 VHRDLHPGNILLADNNDITICDFNLAREDTA 186 (362)
T ss_dssp CCCCCCGGGEEECTTCCEEECCTTC------
T ss_pred EecCCChHHEEEcCCCCEEEEecCccccccc
Confidence 9999999999999999999999999986544
No 256
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=99.90 E-value=1.9e-23 Score=219.90 Aligned_cols=152 Identities=29% Similarity=0.524 Sum_probs=132.0
Q ss_pred hcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCee
Q 003368 641 ATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFK 720 (825)
Q Consensus 641 ~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~ 720 (825)
..++|...+.||+|+||.||+|+. .++..||||.+.... ...+.+.+|++++++++||||+++++++. .+..
T Consensus 11 ~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~------~~~~ 82 (279)
T 1qpc_A 11 PRETLKLVERLGAGQFGEVWMGYY-NGHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVT------QEPI 82 (279)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEE-TTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEEC------SSSC
T ss_pred CHHhhhheeeecCCCCeEEEEEEE-cCCcEEEEEEecCCc-ccHHHHHHHHHHHHhCCCcCcceEEEEEc------CCCc
Confidence 446788999999999999999998 577899999987543 34578999999999999999999999853 3457
Q ss_pred eEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcEE
Q 003368 721 ALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTAH 800 (825)
Q Consensus 721 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~k 800 (825)
++||||+++|+|.+++... ....+++.++..++.|+++||+|||+. +|+||||||+||++++++.+|
T Consensus 83 ~~v~e~~~~~~L~~~l~~~----------~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~k 149 (279)
T 1qpc_A 83 YIITEYMENGSLVDFLKTP----------SGIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCK 149 (279)
T ss_dssp EEEEECCTTCBHHHHTTSH----------HHHTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEE
T ss_pred EEEEecCCCCCHHHHHhcC----------CCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHhhEEEcCCCCEE
Confidence 9999999999999998521 223689999999999999999999986 999999999999999999999
Q ss_pred EcccCcccccccC
Q 003368 801 VGDFGLARLRQEV 813 (825)
Q Consensus 801 i~DFGla~~~~~~ 813 (825)
|+|||+++.....
T Consensus 150 l~Dfg~~~~~~~~ 162 (279)
T 1qpc_A 150 IADFGLARLIEDN 162 (279)
T ss_dssp ECCCTTCEECSSS
T ss_pred ECCCcccccccCc
Confidence 9999999987543
No 257
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=99.90 E-value=1e-23 Score=226.87 Aligned_cols=171 Identities=25% Similarity=0.383 Sum_probs=137.8
Q ss_pred ccHHHHHhhcccccccceeccCCeeEEEEEEEc-----CCCeEEEEEEeecccc-hhHHHHHHHHHHhhcCCCCCceeEe
Q 003368 633 VSYESLLKATDGFSSTHLIGIGSFGSVYKGTFD-----RDGTIVAIKVLNLQLQ-GASKSFAAECRALRNIRHRNLVRVI 706 (825)
Q Consensus 633 ~~~~~~~~~~~~f~~~~~ig~G~~g~Vy~~~~~-----~~g~~vAvK~~~~~~~-~~~~~~~~E~~~l~~l~H~niv~l~ 706 (825)
+..+++....++|...+.||+|+||.||+|++. .+++.||||++..... .....+.+|++++++++||||++++
T Consensus 15 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~ 94 (322)
T 1p4o_A 15 YVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLL 94 (322)
T ss_dssp CCCCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEE
T ss_pred cChhhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeE
Confidence 334445556678999999999999999999875 3578899999975533 3345789999999999999999999
Q ss_pred ecccccccCCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCC
Q 003368 707 TSCSSIDFQGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDL 786 (825)
Q Consensus 707 ~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdl 786 (825)
+++. ..+..++||||+++|+|.+++...... .........+++.++..++.|+++||+|||+. +|+||||
T Consensus 95 ~~~~-----~~~~~~lv~e~~~~~~L~~~l~~~~~~--~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~di 164 (322)
T 1p4o_A 95 GVVS-----QGQPTLVIMELMTRGDLKSYLRSLRPA--MANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDL 164 (322)
T ss_dssp EEEC-----SSSSCEEEEECCTTCBHHHHHHHHHHH--HHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCC
T ss_pred EEEc-----cCCccEEEEEeCCCCcHHHHHHHhchh--hccCCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CCccCCC
Confidence 9853 356789999999999999998532000 00000113578999999999999999999986 8999999
Q ss_pred CCCCeeecCCCcEEEcccCcccccccC
Q 003368 787 KPSNILLDNNLTAHVGDFGLARLRQEV 813 (825)
Q Consensus 787 k~~NILl~~~~~~ki~DFGla~~~~~~ 813 (825)
||+||+++.++.+||+|||+++.....
T Consensus 165 kp~NIli~~~~~~kl~Dfg~~~~~~~~ 191 (322)
T 1p4o_A 165 AARNCMVAEDFTVKIGDFGMTRDIYET 191 (322)
T ss_dssp SGGGEEECTTCCEEECCTTCCCGGGGG
T ss_pred ccceEEEcCCCeEEECcCccccccccc
Confidence 999999999999999999999876543
No 258
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=99.90 E-value=1.1e-23 Score=230.38 Aligned_cols=154 Identities=25% Similarity=0.381 Sum_probs=117.5
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc--chhHHHHHHHHHHhhcCCCCCceeEeeccccc-ccCCCC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL--QGASKSFAAECRALRNIRHRNLVRVITSCSSI-DFQGND 718 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~-~~~~~~ 718 (825)
.++|...+.||+|+||.||+|+...+|+.||||++.... ....+.+.+|+++++.++||||+++++++... .+....
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~ 107 (367)
T 2fst_X 28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN 107 (367)
T ss_dssp ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence 467999999999999999999998999999999996542 23456788999999999999999999986432 112235
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..++|+||+ +++|.+++.. ..+++..+..++.|+++||+|||+. +|+||||||+||+++.++.
T Consensus 108 ~~~lv~e~~-~~~L~~~~~~-------------~~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~ 170 (367)
T 2fst_X 108 DVYLVTHLM-GADLNNIVKC-------------QKLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCE 170 (367)
T ss_dssp CCEEEEECC-CEECC------------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCC
T ss_pred eEEEEeccc-CCCHHHHHhc-------------CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHhhEEECCCCC
Confidence 579999999 7899888742 3588999999999999999999985 9999999999999999999
Q ss_pred EEEcccCccccccc
Q 003368 799 AHVGDFGLARLRQE 812 (825)
Q Consensus 799 ~ki~DFGla~~~~~ 812 (825)
+||+|||+|+....
T Consensus 171 ~kL~DFG~a~~~~~ 184 (367)
T 2fst_X 171 LKILDFGLARHTAD 184 (367)
T ss_dssp EEECC---------
T ss_pred EEEeeccccccccc
Confidence 99999999987643
No 259
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=99.90 E-value=2.2e-23 Score=227.31 Aligned_cols=154 Identities=28% Similarity=0.386 Sum_probs=134.2
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc-hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCee
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ-GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFK 720 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~-~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~ 720 (825)
.++|...+.||+|+||.||+|++..+|+.||||++..... .....+.+|++++++++||||+++++++....+......
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 89 (353)
T 2b9h_A 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV 89 (353)
T ss_dssp CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence 4679999999999999999999988999999999975432 335678899999999999999999998765445555778
Q ss_pred eEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcEE
Q 003368 721 ALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTAH 800 (825)
Q Consensus 721 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~k 800 (825)
++||||+. |+|.+++.. ..+++.++..++.|+++||+|||+. +|+||||||+||+++.++.+|
T Consensus 90 ~lv~e~~~-~~L~~~~~~-------------~~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~Nil~~~~~~~k 152 (353)
T 2b9h_A 90 YIIQELMQ-TDLHRVIST-------------QMLSDDHIQYFIYQTLRAVKVLHGS---NVIHRDLKPSNLLINSNCDLK 152 (353)
T ss_dssp EEEECCCS-EEHHHHHHH-------------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEE
T ss_pred EEEEeccC-ccHHHHHhh-------------cCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEcCCCcEE
Confidence 99999997 689888742 3588999999999999999999986 999999999999999999999
Q ss_pred EcccCccccccc
Q 003368 801 VGDFGLARLRQE 812 (825)
Q Consensus 801 i~DFGla~~~~~ 812 (825)
|+|||+|+....
T Consensus 153 l~Dfg~a~~~~~ 164 (353)
T 2b9h_A 153 VCDFGLARIIDE 164 (353)
T ss_dssp ECCCTTCEECC-
T ss_pred EEeccccccccc
Confidence 999999998754
No 260
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=99.89 E-value=1.7e-23 Score=222.55 Aligned_cols=152 Identities=26% Similarity=0.484 Sum_probs=129.2
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc--hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCee
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ--GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFK 720 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~--~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~ 720 (825)
++|+..+.||+|+||.||+|+...+|+.||||++..... ...+.+.+|++++++++||||+++++++. .++..
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~~ 77 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIH-----TENKL 77 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEE-----ETTEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEe-----cCCce
Confidence 578899999999999999999988999999999875432 23467889999999999999999999854 35678
Q ss_pred eEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcEE
Q 003368 721 ALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTAH 800 (825)
Q Consensus 721 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~k 800 (825)
++||||++ |+|.+++... ....+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+|
T Consensus 78 ~lv~e~~~-~~L~~~~~~~----------~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~k 143 (299)
T 2r3i_A 78 YLVFEFLH-QDLKKFMDAS----------ALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIK 143 (299)
T ss_dssp EEEEECCS-EEHHHHHHHT----------TTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEE
T ss_pred EEEEEccc-CCHHHHHHhh----------hccCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHeEEcCCCCEE
Confidence 99999998 6999988532 123578899999999999999999986 999999999999999999999
Q ss_pred EcccCcccccccC
Q 003368 801 VGDFGLARLRQEV 813 (825)
Q Consensus 801 i~DFGla~~~~~~ 813 (825)
|+|||+++.....
T Consensus 144 l~dfg~~~~~~~~ 156 (299)
T 2r3i_A 144 LADFGLARAFGVP 156 (299)
T ss_dssp ECSTTHHHHHCCC
T ss_pred ECcchhhhhccCC
Confidence 9999999876543
No 261
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=99.89 E-value=3.4e-23 Score=222.38 Aligned_cols=153 Identities=25% Similarity=0.391 Sum_probs=126.5
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeeccccc---------c
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSI---------D 713 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~---------~ 713 (825)
++|...+.||+|+||.||+|+...+|+.||||++........+.+.+|++++++++||||+++++++... .
T Consensus 11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~ 90 (320)
T 2i6l_A 11 SRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGS 90 (320)
T ss_dssp TTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC----
T ss_pred CceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccccccc
Confidence 5688899999999999999999888999999999876666677899999999999999999999886321 1
Q ss_pred cCCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeee
Q 003368 714 FQGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILL 793 (825)
Q Consensus 714 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl 793 (825)
+......++||||++ |+|.+++.. ..+++..+..++.|+++||+|||+. +|+||||||+||++
T Consensus 91 ~~~~~~~~lv~e~~~-~~L~~~~~~-------------~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~ 153 (320)
T 2i6l_A 91 LTELNSVYIVQEYME-TDLANVLEQ-------------GPLLEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANLFI 153 (320)
T ss_dssp CCSCSEEEEEEECCS-EEHHHHHTT-------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEE
T ss_pred ccccCceeEEeeccC-CCHHHHhhc-------------CCccHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEE
Confidence 234567899999998 699998842 2578889999999999999999986 99999999999999
Q ss_pred c-CCCcEEEcccCccccccc
Q 003368 794 D-NNLTAHVGDFGLARLRQE 812 (825)
Q Consensus 794 ~-~~~~~ki~DFGla~~~~~ 812 (825)
+ +++.+||+|||+++....
T Consensus 154 ~~~~~~~kl~Dfg~~~~~~~ 173 (320)
T 2i6l_A 154 NTEDLVLKIGDFGLARIMDP 173 (320)
T ss_dssp ETTTTEEEECCCTTCBCC--
T ss_pred cCCCCeEEEccCccccccCC
Confidence 7 567999999999997653
No 262
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=99.89 E-value=8.8e-24 Score=242.94 Aligned_cols=154 Identities=32% Similarity=0.529 Sum_probs=132.6
Q ss_pred HHhhcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCC
Q 003368 638 LLKATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGN 717 (825)
Q Consensus 638 ~~~~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 717 (825)
+....++|...+.||+|+||.||+|++. .+..||||+++... ...++|.+|++++++++|||||+++++|. .
T Consensus 262 ~~i~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~------~ 333 (535)
T 2h8h_A 262 WEIPRESLRLEVKLGQGCFGEVWMGTWN-GTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVS------E 333 (535)
T ss_dssp SBCCGGGEEEEEEEEECSSEEEEEEEET-TTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEEC------S
T ss_pred eecchhhhhhheecccCCCeEEEEEEEC-CCceEEEEEeCCCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEe------e
Confidence 3344567888999999999999999994 56789999997653 23578999999999999999999999863 2
Q ss_pred CeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCC
Q 003368 718 DFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNL 797 (825)
Q Consensus 718 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~ 797 (825)
+..++||||+++|+|.+++.. .....+++.+++.|+.||++||+|||+. +||||||||+|||+++++
T Consensus 334 ~~~~lv~e~~~~gsL~~~l~~----------~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~ 400 (535)
T 2h8h_A 334 EPIYIVTEYMSKGSLLDFLKG----------ETGKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENL 400 (535)
T ss_dssp SSCEEEECCCTTEEHHHHHSH----------HHHTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGG
T ss_pred ccceEeeehhcCCcHHHHHhh----------cCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEEcCCC
Confidence 457999999999999999952 1224589999999999999999999985 899999999999999999
Q ss_pred cEEEcccCccccccc
Q 003368 798 TAHVGDFGLARLRQE 812 (825)
Q Consensus 798 ~~ki~DFGla~~~~~ 812 (825)
.+||+|||+++....
T Consensus 401 ~~kl~DFG~a~~~~~ 415 (535)
T 2h8h_A 401 VCKVADFGLARLIED 415 (535)
T ss_dssp CEEECCTTSTTTCCC
T ss_pred cEEEcccccceecCC
Confidence 999999999997643
No 263
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=99.89 E-value=3.7e-23 Score=223.29 Aligned_cols=148 Identities=22% Similarity=0.373 Sum_probs=129.9
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCC-CCCceeEeecccccccCCCCee
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIR-HRNLVRVITSCSSIDFQGNDFK 720 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~l~~~~~~~~~~~~~~~ 720 (825)
.++|+..+.||+|+||.||+|+...+++.||||++... ..+.+.+|++++++++ ||||+++++++.. ......
T Consensus 35 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~---~~~~~~ 108 (330)
T 3nsz_A 35 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV---KKKKIKREIKILENLRGGPNIITLADIVKD---PVSRTP 108 (330)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC---CHHHHHHHHHHHHHHTTSTTBCCEEEEEEC---TTTCCE
T ss_pred CCceEEEEEecccCCeEEEEEEECCCCcEEEEEEeccc---chHHHHHHHHHHHHcCCCCCEEEeeeeecc---CCCCce
Confidence 35789999999999999999999899999999998743 3467899999999997 9999999998643 224568
Q ss_pred eEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCC-cE
Q 003368 721 ALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNL-TA 799 (825)
Q Consensus 721 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~-~~ 799 (825)
++||||+++++|.+++. .+++.++..++.|+++||+|||+. +|+||||||+|||++.++ .+
T Consensus 109 ~lv~e~~~~~~l~~~~~---------------~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~~ 170 (330)
T 3nsz_A 109 ALVFEHVNNTDFKQLYQ---------------TLTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKL 170 (330)
T ss_dssp EEEEECCCCCCHHHHGG---------------GCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEE
T ss_pred EEEEeccCchhHHHHHH---------------hCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEcCCCCEE
Confidence 99999999999998872 478889999999999999999986 899999999999999776 89
Q ss_pred EEcccCcccccccC
Q 003368 800 HVGDFGLARLRQEV 813 (825)
Q Consensus 800 ki~DFGla~~~~~~ 813 (825)
||+|||+|+.....
T Consensus 171 kl~Dfg~a~~~~~~ 184 (330)
T 3nsz_A 171 RLIDWGLAEFYHPG 184 (330)
T ss_dssp EECCCTTCEECCTT
T ss_pred EEEeCCCceEcCCC
Confidence 99999999976544
No 264
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=99.89 E-value=1.8e-23 Score=225.98 Aligned_cols=152 Identities=29% Similarity=0.511 Sum_probs=125.0
Q ss_pred ccccccceeccCCeeEEEEEEEcCCC----eEEEEEEeecccc-hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCC
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDG----TIVAIKVLNLQLQ-GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGN 717 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g----~~vAvK~~~~~~~-~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 717 (825)
+.|...+.||+|+||.||+|++..++ ..||||+++.... ...+.+.+|++++++++||||+++++++. ..
T Consensus 44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~ 118 (333)
T 1mqb_A 44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVIS-----KY 118 (333)
T ss_dssp TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-----SS
T ss_pred HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEe-----cC
Confidence 45677899999999999999985443 4699999976533 33557999999999999999999999853 35
Q ss_pred CeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCC
Q 003368 718 DFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNL 797 (825)
Q Consensus 718 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~ 797 (825)
+..++||||+++|+|.+++... ...+++.++..++.|+++||+|||+. +|+||||||+||+++.++
T Consensus 119 ~~~~lv~e~~~~~~L~~~l~~~-----------~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~ 184 (333)
T 1mqb_A 119 KPMMIITEYMENGALDKFLREK-----------DGEFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNL 184 (333)
T ss_dssp SSEEEEEECCTTEEHHHHHHHT-----------TTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTC
T ss_pred CCcEEEEeCCCCCcHHHHHHhC-----------CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChheEEECCCC
Confidence 6789999999999999998521 24689999999999999999999986 899999999999999999
Q ss_pred cEEEcccCcccccccC
Q 003368 798 TAHVGDFGLARLRQEV 813 (825)
Q Consensus 798 ~~ki~DFGla~~~~~~ 813 (825)
.+||+|||+++.....
T Consensus 185 ~~kl~Dfg~~~~~~~~ 200 (333)
T 1mqb_A 185 VCKVSDFGLSRVLEDD 200 (333)
T ss_dssp CEEECCCCC-------
T ss_pred cEEECCCCcchhhccc
Confidence 9999999999987543
No 265
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=99.89 E-value=3.8e-24 Score=235.48 Aligned_cols=162 Identities=17% Similarity=0.205 Sum_probs=126.2
Q ss_pred hcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecc---cchhHHHHHHHH---HHhhcCCCCCceeEeecccccc-
Q 003368 641 ATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQ---LQGASKSFAAEC---RALRNIRHRNLVRVITSCSSID- 713 (825)
Q Consensus 641 ~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~---~~~~~~~~~~E~---~~l~~l~H~niv~l~~~~~~~~- 713 (825)
..++|...+.||+|+||+||+|++..+|+.||||++... .....+.|.+|+ +.+++++|||||++++.+....
T Consensus 71 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~ 150 (377)
T 3byv_A 71 RPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFD 150 (377)
T ss_dssp CCEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSE
T ss_pred CCceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhh
Confidence 346788899999999999999999888999999999743 234457899999 5666668999999986543100
Q ss_pred -cCCC------------C-----eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHh
Q 003368 714 -FQGN------------D-----FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHH 775 (825)
Q Consensus 714 -~~~~------------~-----~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~ 775 (825)
+... + ..++||||+ +|+|.+++..... .......++|..+..|+.|+++||+|||+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~-----~~~~~~~l~~~~~~~i~~qi~~aL~~LH~ 224 (377)
T 3byv_A 151 LVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLS-----HSSTHKSLVHHARLQLTLQVIRLLASLHH 224 (377)
T ss_dssp EEECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHH-----TTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccc-----cccccccccHHHHHHHHHHHHHHHHHHHh
Confidence 1111 1 268999999 6899999953200 00112346678899999999999999999
Q ss_pred cCCCCeeecCCCCCCeeecCCCcEEEcccCcccccc
Q 003368 776 HCQEPTIHCDLKPSNILLDNNLTAHVGDFGLARLRQ 811 (825)
Q Consensus 776 ~~~~~ivHrdlk~~NILl~~~~~~ki~DFGla~~~~ 811 (825)
. +|+||||||+|||++.++.+||+|||+|+...
T Consensus 225 ~---~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~ 257 (377)
T 3byv_A 225 Y---GLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDG 257 (377)
T ss_dssp T---TEECSCCCGGGEEECTTCCEEECCGGGCEETT
T ss_pred C---CeecCCCCHHHEEEcCCCCEEEEechhheecC
Confidence 6 89999999999999999999999999999643
No 266
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=99.89 E-value=2.1e-23 Score=221.83 Aligned_cols=152 Identities=30% Similarity=0.497 Sum_probs=128.9
Q ss_pred ccccccceeccCCeeEEEEEEEcCC---CeEEEEEEeecccc-hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCC
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRD---GTIVAIKVLNLQLQ-GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGND 718 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~---g~~vAvK~~~~~~~-~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~ 718 (825)
..|...+.||+|+||.||+|++..+ +..||||.+..... ...+.+.+|++++++++||||++++++|. ..++
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~----~~~~ 100 (298)
T 3f66_A 25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICL----RSEG 100 (298)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEC----CSSS
T ss_pred eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEE----cCCC
Confidence 4578889999999999999997433 34689999875433 34567999999999999999999999864 3455
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..++||||+++|+|.+++... ...+++.++..++.|+++||+|||+. +|+||||||+||+++.++.
T Consensus 101 ~~~~v~e~~~~~~L~~~l~~~-----------~~~~~~~~~~~i~~ql~~~l~~lH~~---~i~H~dikp~Nil~~~~~~ 166 (298)
T 3f66_A 101 SPLVVLPYMKHGDLRNFIRNE-----------THNPTVKDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFT 166 (298)
T ss_dssp CCEEEEECCTTCBHHHHHHCT-----------TCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCC
T ss_pred ceEEEEeCCCCCCHHHHHHhc-----------ccCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEECCCCC
Confidence 779999999999999999532 23578999999999999999999986 9999999999999999999
Q ss_pred EEEcccCccccccc
Q 003368 799 AHVGDFGLARLRQE 812 (825)
Q Consensus 799 ~ki~DFGla~~~~~ 812 (825)
+||+|||+|+....
T Consensus 167 ~kl~Dfg~a~~~~~ 180 (298)
T 3f66_A 167 VKVADFGLARDMYD 180 (298)
T ss_dssp EEECSCGGGCCCSC
T ss_pred EEECcccccccccc
Confidence 99999999987644
No 267
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=99.89 E-value=2.7e-23 Score=220.89 Aligned_cols=150 Identities=31% Similarity=0.484 Sum_probs=127.4
Q ss_pred ccccceeccCCeeEEEEEEEcCCCe---EEEEEEeecccc-hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCee
Q 003368 645 FSSTHLIGIGSFGSVYKGTFDRDGT---IVAIKVLNLQLQ-GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFK 720 (825)
Q Consensus 645 f~~~~~ig~G~~g~Vy~~~~~~~g~---~vAvK~~~~~~~-~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~ 720 (825)
|...++||+|+||.||+|++..+++ .||||.+..... ...+.|.+|++++++++||||+++++++.. .+...
T Consensus 23 ~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~----~~~~~ 98 (298)
T 3pls_A 23 THSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLP----PEGLP 98 (298)
T ss_dssp EEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECC----SSSCC
T ss_pred EccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEec----CCCCc
Confidence 5567899999999999999754443 799999875433 345789999999999999999999998642 23445
Q ss_pred eEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcEE
Q 003368 721 ALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTAH 800 (825)
Q Consensus 721 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~k 800 (825)
++||||+.+|+|.+++... ...+++.++..++.|+++||+|||+. +|+||||||+||+++.++.+|
T Consensus 99 ~~v~e~~~~~~L~~~~~~~-----------~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nili~~~~~~k 164 (298)
T 3pls_A 99 HVLLPYMCHGDLLQFIRSP-----------QRNPTVKDLISFGLQVARGMEYLAEQ---KFVHRDLAARNCMLDESFTVK 164 (298)
T ss_dssp EEEECCCTTCBHHHHHHCT-----------TCCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEE
T ss_pred EEEEecccCCCHHHHHhcc-----------ccCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcEE
Confidence 8999999999999999532 24678999999999999999999986 899999999999999999999
Q ss_pred EcccCccccccc
Q 003368 801 VGDFGLARLRQE 812 (825)
Q Consensus 801 i~DFGla~~~~~ 812 (825)
|+|||+|+....
T Consensus 165 l~Dfg~~~~~~~ 176 (298)
T 3pls_A 165 VADFGLARDILD 176 (298)
T ss_dssp ECCTTSSCTTTT
T ss_pred eCcCCCcccccC
Confidence 999999986543
No 268
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=99.89 E-value=2.4e-23 Score=226.89 Aligned_cols=155 Identities=25% Similarity=0.426 Sum_probs=130.1
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc--hhHHHHHHHHHHhhcCCCCCceeEeeccccccc---CC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ--GASKSFAAECRALRNIRHRNLVRVITSCSSIDF---QG 716 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~--~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~---~~ 716 (825)
.++|...+.||+|+||.||+|+...+|+.||||++..... .....+.+|++++++++||||++++++|..... ..
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 95 (351)
T 3mi9_A 16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC 95 (351)
T ss_dssp GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence 4578999999999999999999989999999999865432 234678899999999999999999998754211 11
Q ss_pred CCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCC
Q 003368 717 NDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNN 796 (825)
Q Consensus 717 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~ 796 (825)
.+..++||||+++ ++.+.+... ...+++.++..|+.|++.||+|||+. +|+||||||+|||++.+
T Consensus 96 ~~~~~lv~e~~~~-~l~~~l~~~-----------~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~ 160 (351)
T 3mi9_A 96 KGSIYLVFDFCEH-DLAGLLSNV-----------LVKFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRD 160 (351)
T ss_dssp -CEEEEEEECCSE-EHHHHHHCT-----------TSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTT
T ss_pred CceEEEEEeccCC-CHHHHHhhc-----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCC
Confidence 4568999999985 777776422 23589999999999999999999986 99999999999999999
Q ss_pred CcEEEcccCcccccc
Q 003368 797 LTAHVGDFGLARLRQ 811 (825)
Q Consensus 797 ~~~ki~DFGla~~~~ 811 (825)
+.+||+|||+|+...
T Consensus 161 ~~~kl~Dfg~a~~~~ 175 (351)
T 3mi9_A 161 GVLKLADFGLARAFS 175 (351)
T ss_dssp SCEEECCCTTCEECC
T ss_pred CCEEEccchhccccc
Confidence 999999999998765
No 269
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=1.2e-23 Score=224.95 Aligned_cols=203 Identities=15% Similarity=0.132 Sum_probs=151.4
Q ss_pred CCCCEEEcCCCcccccC-C--ccccCCCCCCEEECCCCcCCCCCCcCC--CCCCCCCEEEcCCCCCCCCCC----hhhhc
Q 003368 56 SFLREIHLSNNTIQGKI-P--GEIGRLFRLEALYLSHNSLVGEIPGNL--SYCSRLIGLYLGRNKLEGSIP----SEFVS 126 (825)
Q Consensus 56 ~~L~~L~Ls~N~l~~~~-p--~~~~~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p----~~~~~ 126 (825)
..++.|.+.++.++... . ..+..+++|++|+|++|.+++..|..+ ..+++|++|+|++|++++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 35788999888876321 1 112235679999999999999999998 899999999999999997665 45567
Q ss_pred ccccceeeccccccccccCccCCCCCCCCEEEcccCcCccc--C--CcccccccccceecCcCcCCccccCCCCCceeec
Q 003368 127 LYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGN--I--PSSLGQLKELKSLGLGGTIPPSIYNLSLLANFSV 202 (825)
Q Consensus 127 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~--p~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l 202 (825)
+++|++|+|++|++++..|..|+.+++|++|+|++|++.+. + +..+..+++|++| ++
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L-------------------~L 204 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNL-------------------AL 204 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSC-------------------BC
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEE-------------------EC
Confidence 99999999999999988889999999999999999998752 2 1223556666665 77
Q ss_pred CCccccccCCc---hhhhcCCCCcEEEcccccCCCCCCccccCC---CCccEEEeecccccCccccCcCCCCCCcEEEcc
Q 003368 203 PENRLHGSLPP---SLGLTLSNLQLFQISNNFFSGSFPLAFSNA---SNLQSLEILGNNFFGKLSVNFGDMKSLAYLNVA 276 (825)
Q Consensus 203 ~~N~l~~~lp~---~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ls 276 (825)
++|+++ .+|. .++..+++|++|+|++|++++..|..+..+ ++|++|+|++|++.. +|..+. ++|+.|+++
T Consensus 205 s~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls 280 (310)
T 4glp_A 205 RNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGLP--AKLRVLDLS 280 (310)
T ss_dssp CSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CCSCCC--SCCSCEECC
T ss_pred CCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-hhhhhc--CCCCEEECC
Confidence 778776 2332 244478899999999999998878777766 588888888888773 333332 455555555
Q ss_pred cccCC
Q 003368 277 INNLG 281 (825)
Q Consensus 277 ~N~l~ 281 (825)
+|+++
T Consensus 281 ~N~l~ 285 (310)
T 4glp_A 281 SNRLN 285 (310)
T ss_dssp SCCCC
T ss_pred CCcCC
Confidence 55544
No 270
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=99.89 E-value=2.7e-23 Score=217.02 Aligned_cols=149 Identities=26% Similarity=0.427 Sum_probs=131.1
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCeee
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFKA 721 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~~ 721 (825)
.++|...+.||+|+||.||+|++ .+++.||||++..... ..+.+.+|++++++++||||+++++++. .++..+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~~~ 79 (267)
T 3t9t_A 7 PSELTFVQEIGSGQFGLVHLGYW-LNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCL-----EQAPIC 79 (267)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEE-TTTEEEEEEEECTTTB-CHHHHHHHHHHHHTCCCTTBCCEEEEEC-----SSSSCE
T ss_pred hhheeeeeEecCCCceeEEEEEe-cCCCeEEEEEccccCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEc-----cCCCeE
Confidence 35688899999999999999998 4788999999976543 3467999999999999999999999853 356789
Q ss_pred EEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcEEE
Q 003368 722 LVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTAHV 801 (825)
Q Consensus 722 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ki 801 (825)
+||||+++|+|.+++... ...+++.++..++.|+++||+|||+. +|+||||||+||+++.++.+||
T Consensus 80 lv~e~~~~~~L~~~~~~~-----------~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl 145 (267)
T 3t9t_A 80 LVTEFMEHGCLSDYLRTQ-----------RGLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKV 145 (267)
T ss_dssp EEECCCTTCBHHHHHHHT-----------TTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECGGGCEEE
T ss_pred EEEeCCCCCcHHHHHhhC-----------cccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEECCCCCEEE
Confidence 999999999999998532 23588999999999999999999986 8999999999999999999999
Q ss_pred cccCcccccc
Q 003368 802 GDFGLARLRQ 811 (825)
Q Consensus 802 ~DFGla~~~~ 811 (825)
+|||+++...
T Consensus 146 ~dfg~~~~~~ 155 (267)
T 3t9t_A 146 SDFGMTRFVL 155 (267)
T ss_dssp CCTTGGGGBC
T ss_pred cccccccccc
Confidence 9999998764
No 271
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=99.89 E-value=2.4e-23 Score=225.35 Aligned_cols=161 Identities=24% Similarity=0.284 Sum_probs=135.1
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCC-CCCceeEeecccccc---cCCC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIR-HRNLVRVITSCSSID---FQGN 717 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~l~~~~~~~~---~~~~ 717 (825)
..+|...++||+|+||.||+|++..+|+.||||++........+.+.+|++++.+++ ||||+++++++.... ....
T Consensus 27 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~ 106 (337)
T 3ll6_A 27 ELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQ 106 (337)
T ss_dssp TEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSS
T ss_pred CceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCC
Confidence 356889999999999999999998899999999997665566678999999999996 999999999874211 1334
Q ss_pred CeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCC
Q 003368 718 DFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNL 797 (825)
Q Consensus 718 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~ 797 (825)
...++||||+. |+|.+++... .....+++.++..|+.|++.||+|||+. .++|+||||||+|||++.++
T Consensus 107 ~~~~lv~e~~~-g~L~~~l~~~---------~~~~~~~~~~~~~i~~qi~~~l~~LH~~-~~~ivH~Dikp~NIl~~~~~ 175 (337)
T 3ll6_A 107 AEFLLLTELCK-GQLVEFLKKM---------ESRGPLSCDTVLKIFYQTCRAVQHMHRQ-KPPIIHRDLKVENLLLSNQG 175 (337)
T ss_dssp EEEEEEEECCS-EEHHHHHHHH---------HTTCSCCHHHHHHHHHHHHHHHHHHHTS-SSCCBCCCCCGGGCEECTTS
T ss_pred ceEEEEEEecC-CCHHHHHHHh---------hccCCCCHHHHHHHHHHHHHHHHHHHhC-CCCEEEccCCcccEEECCCC
Confidence 56799999996 7999988421 1234689999999999999999999986 12399999999999999999
Q ss_pred cEEEcccCcccccccC
Q 003368 798 TAHVGDFGLARLRQEV 813 (825)
Q Consensus 798 ~~ki~DFGla~~~~~~ 813 (825)
.+||+|||+++.....
T Consensus 176 ~~kl~Dfg~~~~~~~~ 191 (337)
T 3ll6_A 176 TIKLCDFGSATTISHY 191 (337)
T ss_dssp CEEBCCCTTCBCCSSC
T ss_pred CEEEecCccceecccc
Confidence 9999999999987543
No 272
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=99.89 E-value=2.3e-23 Score=223.02 Aligned_cols=166 Identities=26% Similarity=0.376 Sum_probs=135.0
Q ss_pred hcccccccceeccCCeeEEEEEEE-----cCCCeEEEEEEeecccc-hhHHHHHHHHHHhhcC-CCCCceeEeecccccc
Q 003368 641 ATDGFSSTHLIGIGSFGSVYKGTF-----DRDGTIVAIKVLNLQLQ-GASKSFAAECRALRNI-RHRNLVRVITSCSSID 713 (825)
Q Consensus 641 ~~~~f~~~~~ig~G~~g~Vy~~~~-----~~~g~~vAvK~~~~~~~-~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~ 713 (825)
..++|...+.||+|+||.||+|++ ..+++.||||++..... ...+.+.+|+++++++ +||||++++++|.
T Consensus 21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~--- 97 (313)
T 1t46_A 21 PRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACT--- 97 (313)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC---
T ss_pred ChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEe---
Confidence 346788899999999999999985 35678999999976543 3456799999999999 8999999999864
Q ss_pred cCCCCeeeEEEEccCCCChhhhccCCCCCCCc------ccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCC
Q 003368 714 FQGNDFKALVYQYMPNGSLENWLHPDAIPQTD------EENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLK 787 (825)
Q Consensus 714 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~------~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk 787 (825)
.++..++||||+++|+|.+++......... ........+++.++..++.|+++||+|||+. +|+|||||
T Consensus 98 --~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlk 172 (313)
T 1t46_A 98 --IGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLA 172 (313)
T ss_dssp --SSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCS
T ss_pred --cCCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCc
Confidence 356789999999999999999643211000 0011223589999999999999999999986 99999999
Q ss_pred CCCeeecCCCcEEEcccCcccccccCC
Q 003368 788 PSNILLDNNLTAHVGDFGLARLRQEVP 814 (825)
Q Consensus 788 ~~NILl~~~~~~ki~DFGla~~~~~~~ 814 (825)
|+||+++.++.+||+|||+++......
T Consensus 173 p~Nil~~~~~~~kl~Dfg~~~~~~~~~ 199 (313)
T 1t46_A 173 ARNILLTHGRITKICDFGLARDIKNDS 199 (313)
T ss_dssp GGGEEEETTTEEEECCCGGGSCTTSCT
T ss_pred cceEEEcCCCCEEEccccccccccccc
Confidence 999999999999999999999876543
No 273
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=99.89 E-value=2.2e-23 Score=243.12 Aligned_cols=144 Identities=26% Similarity=0.437 Sum_probs=125.1
Q ss_pred eeccCCeeEEEEEEEc--CCCeEEEEEEeeccc-chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCeeeEEEEc
Q 003368 650 LIGIGSFGSVYKGTFD--RDGTIVAIKVLNLQL-QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFKALVYQY 726 (825)
Q Consensus 650 ~ig~G~~g~Vy~~~~~--~~g~~vAvK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~~lv~e~ 726 (825)
.||+|+||.||+|+++ .++..||||+++... ....++|.+|++++++++|||||+++++|.. +..++||||
T Consensus 343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~------~~~~lv~E~ 416 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA------EALMLVMEM 416 (613)
T ss_dssp EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES------SSEEEEEEC
T ss_pred EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc------CCeEEEEEe
Confidence 7999999999999875 356789999997653 3356789999999999999999999998642 458999999
Q ss_pred cCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcEEEcccCc
Q 003368 727 MPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTAHVGDFGL 806 (825)
Q Consensus 727 ~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ki~DFGl 806 (825)
+++|+|.+++... ...+++.++..|+.||++||+|||+. +||||||||+|||++.++.+||+|||+
T Consensus 417 ~~~g~L~~~l~~~-----------~~~l~~~~~~~i~~qi~~~L~~LH~~---~iiHrDlkp~NILl~~~~~vkL~DFGl 482 (613)
T 2ozo_A 417 AGGGPLHKFLVGK-----------REEIPVSNVAELLHQVSMGMKYLEEK---NFVHRNLAARNVLLVNRHYAKISDFGL 482 (613)
T ss_dssp CTTCBHHHHHTTC-----------TTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCST
T ss_pred CCCCcHHHHHhhc-----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CEEcCcCCHHHEEEcCCCcEEEeeccC
Confidence 9999999999532 23589999999999999999999985 899999999999999999999999999
Q ss_pred ccccccC
Q 003368 807 ARLRQEV 813 (825)
Q Consensus 807 a~~~~~~ 813 (825)
|+.....
T Consensus 483 a~~~~~~ 489 (613)
T 2ozo_A 483 SKALGAD 489 (613)
T ss_dssp TTTCC--
T ss_pred cccccCC
Confidence 9987543
No 274
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=1.4e-22 Score=209.58 Aligned_cols=179 Identities=25% Similarity=0.294 Sum_probs=136.2
Q ss_pred CCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeecc
Q 003368 57 FLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQ 136 (825)
Q Consensus 57 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 136 (825)
..++++++++.++ .+|..+. ++|+.|+|++|+|++..+..|..+++|++|+|++|+|++..|..|..+++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4678999999998 5776665 589999999999998888899999999999999999998888889999999999999
Q ss_pred ccccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcCCccccCCCCCceeecCCccccccCCchhh
Q 003368 137 ENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLPPSLG 216 (825)
Q Consensus 137 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~~~ 216 (825)
+|++++..+..|..+++|++|+|++|+|++..+..|..+++|++| ++++|+++ .+|+..+
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-------------------~Ls~N~l~-~~~~~~~ 151 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL-------------------RLNTNQLQ-SIPAGAF 151 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-------------------ECCSSCCC-CCCTTTT
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEE-------------------ECcCCcCC-ccCHHHc
Confidence 999998888888999999999999999986666556666555555 55556665 3333333
Q ss_pred hcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccC
Q 003368 217 LTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFG 258 (825)
Q Consensus 217 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 258 (825)
..+++|++|+|++|++++..+..|..+++|+.|+|++|++.+
T Consensus 152 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 152 DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 356666666666666665555556666666666666665544
No 275
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=99.89 E-value=4e-23 Score=219.50 Aligned_cols=149 Identities=23% Similarity=0.292 Sum_probs=129.8
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcC-CCCCceeEeecccccccCCCCeee
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNI-RHRNLVRVITSCSSIDFQGNDFKA 721 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~~~~~ 721 (825)
++|...+.||+|+||.||+|+...+|+.||||++.... ..+.+.+|+++++++ +|+|++++++++. .....+
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~-----~~~~~~ 82 (298)
T 1csn_A 10 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQ-----EGLHNV 82 (298)
T ss_dssp TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEE-----ETTEEE
T ss_pred cceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecC-----CCceeE
Confidence 56899999999999999999998899999999986543 234678999999999 7999999999853 466789
Q ss_pred EEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc---
Q 003368 722 LVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT--- 798 (825)
Q Consensus 722 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~--- 798 (825)
+||||+ +|+|.+++... ...+++.++..|+.|+++||+|||+. +|+||||||+||+++.++.
T Consensus 83 lv~e~~-~~~L~~~l~~~-----------~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~~~ 147 (298)
T 1csn_A 83 LVIDLL-GPSLEDLLDLC-----------GRKFSVKTVAMAAKQMLARVQSIHEK---SLVYRDIKPDNFLIGRPNSKNA 147 (298)
T ss_dssp EEEECC-CCBHHHHHHHT-----------TTCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECCSSSTTT
T ss_pred EEEEec-CCCHHHHHHHh-----------ccCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEeccCCCCCC
Confidence 999999 99999998532 23589999999999999999999985 9999999999999988776
Q ss_pred --EEEcccCcccccccC
Q 003368 799 --AHVGDFGLARLRQEV 813 (825)
Q Consensus 799 --~ki~DFGla~~~~~~ 813 (825)
+||+|||+|+.....
T Consensus 148 ~~~kl~Dfg~~~~~~~~ 164 (298)
T 1csn_A 148 NMIYVVDFGMVKFYRDP 164 (298)
T ss_dssp TCEEECCCTTCEESBCT
T ss_pred CeEEEEECccccccccc
Confidence 999999999987654
No 276
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.89 E-value=5.7e-24 Score=244.96 Aligned_cols=152 Identities=16% Similarity=0.095 Sum_probs=117.5
Q ss_pred eeccCCeeEEEEEEEcCCCeEEEEEEeeccc----------chhHHHHHHHHHHhhcC-CCCCceeEeecccccccCCCC
Q 003368 650 LIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL----------QGASKSFAAECRALRNI-RHRNLVRVITSCSSIDFQGND 718 (825)
Q Consensus 650 ~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~----------~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~~ 718 (825)
..+.|+.|.+++++....|+.||||++.... ....++|.+|+++|+++ .|+||++++++ ++++.
T Consensus 241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~-----~ed~~ 315 (569)
T 4azs_A 241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAH-----GENAQ 315 (569)
T ss_dssp C-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEE-----EECSS
T ss_pred ccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEE-----EEECC
Confidence 3567777777777766788999999997542 12345799999999999 69999999998 56678
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..||||||++||+|.+++... ..++. .+|+.||+.||+|+|+. +||||||||+|||+++++.
T Consensus 316 ~~yLVMEyv~G~~L~d~i~~~------------~~l~~---~~I~~QIl~AL~ylH~~---GIIHRDIKPeNILL~~dg~ 377 (569)
T 4azs_A 316 SGWLVMEKLPGRLLSDMLAAG------------EEIDR---EKILGSLLRSLAALEKQ---GFWHDDVRPWNVMVDARQH 377 (569)
T ss_dssp EEEEEEECCCSEEHHHHHHTT------------CCCCH---HHHHHHHHHHHHHHHHT---TCEESCCCGGGEEECTTSC
T ss_pred EEEEEEecCCCCcHHHHHHhC------------CCCCH---HHHHHHHHHHHHHHHHC---CceeccCchHhEEECCCCC
Confidence 899999999999999999543 23443 35899999999999996 9999999999999999999
Q ss_pred EEEcccCcccccccCCCCCccccccC
Q 003368 799 AHVGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 799 ~ki~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
+||+|||+|+..........+.+||+
T Consensus 378 vKL~DFGlAr~~~~~~~~~~t~vGTp 403 (569)
T 4azs_A 378 ARLIDFGSIVTTPQDCSWPTNLVQSF 403 (569)
T ss_dssp EEECCCTTEESCC---CCSHHHHHHH
T ss_pred EEEeecccCeeCCCCCccccCceech
Confidence 99999999998876655566677775
No 277
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=99.89 E-value=3.7e-23 Score=223.97 Aligned_cols=153 Identities=27% Similarity=0.359 Sum_probs=124.8
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcC--CCCCceeEeecccccccCCCCe
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNI--RHRNLVRVITSCSSIDFQGNDF 719 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l--~H~niv~l~~~~~~~~~~~~~~ 719 (825)
.++|+..+.||+|+||.||+|++ +|+.||||++.... ...+.+|.+++... +||||+++++++... ......
T Consensus 36 ~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~-~~~~~~ 109 (337)
T 3mdy_A 36 AKQIQMVKQIGKGRYGEVWMGKW--RGEKVAVKVFFTTE---EASWFRETEIYQTVLMRHENILGFIAADIKG-TGSWTQ 109 (337)
T ss_dssp HHHCEEEEEEEEETTEEEEEEEE--TTEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEES-CGGGCE
T ss_pred ccceEEEeEeecCCCeEEEEEEE--CCceEEEEEEeccc---cchhhhHHHHHHHHhhcCCCeeeEEEEEccC-CCCCCc
Confidence 46799999999999999999998 48999999986432 33455566665554 899999999987542 111257
Q ss_pred eeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcC-----CCCeeecCCCCCCeeec
Q 003368 720 KALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHC-----QEPTIHCDLKPSNILLD 794 (825)
Q Consensus 720 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~-----~~~ivHrdlk~~NILl~ 794 (825)
.++||||+++|+|.+++.. ..+++.++..++.|++.||+|||+.+ .++|+||||||+|||++
T Consensus 110 ~~lv~e~~~~g~L~~~l~~-------------~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~ 176 (337)
T 3mdy_A 110 LYLITDYHENGSLYDYLKS-------------TTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVK 176 (337)
T ss_dssp EEEEECCCTTCBHHHHHHH-------------CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEEC
T ss_pred eEEEEeccCCCcHHHHhhc-------------cCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEEC
Confidence 8999999999999999842 25889999999999999999999741 23899999999999999
Q ss_pred CCCcEEEcccCcccccccC
Q 003368 795 NNLTAHVGDFGLARLRQEV 813 (825)
Q Consensus 795 ~~~~~ki~DFGla~~~~~~ 813 (825)
.++.+||+|||+|+.....
T Consensus 177 ~~~~~kl~Dfg~a~~~~~~ 195 (337)
T 3mdy_A 177 KNGTCCIADLGLAVKFISD 195 (337)
T ss_dssp TTSCEEECCCTTCEECC--
T ss_pred CCCCEEEEeCCCceeeccc
Confidence 9999999999999876544
No 278
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=8.3e-24 Score=226.18 Aligned_cols=224 Identities=17% Similarity=0.155 Sum_probs=179.0
Q ss_pred cEEEEECCCCCCccccCc---CCCCCCCCCEEEcCCCcccccCCccc--cCCCCCCEEECCCCcCCCCCC----cCCCCC
Q 003368 33 RVTVLDLKSKGLIGSLSP---QIGNLSFLREIHLSNNTIQGKIPGEI--GRLFRLEALYLSHNSLVGEIP----GNLSYC 103 (825)
Q Consensus 33 ~l~~l~L~~n~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p----~~~~~l 103 (825)
+++.++++...+....-. .+..+++|++|+|++|++++..|..+ ..+++|++|+|++|++++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 578888888777532111 12245679999999999999999998 899999999999999997665 455689
Q ss_pred CCCCEEEcCCCCCCCCCChhhhcccccceeeccccccccc---c-CccCCCCCCCCEEEcccCcCcccCCc----ccccc
Q 003368 104 SRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQENNLTGG---I-PHFLGNITSLEAISLAYNSLGGNIPS----SLGQL 175 (825)
Q Consensus 104 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~---~-p~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l 175 (825)
++|++|+|++|+|++..|..|..+++|++|+|++|++.+. . +..++.+++|++|+|++|+++. +|. .+..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcC
Confidence 9999999999999988889999999999999999998752 2 2345789999999999999973 332 24566
Q ss_pred cccceecCcCcCCccccCCCCCceeecCCccccccCCchhhhcC---CCCcEEEcccccCCCCCCccccCCCCccEEEee
Q 003368 176 KELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLPPSLGLTL---SNLQLFQISNNFFSGSFPLAFSNASNLQSLEIL 252 (825)
Q Consensus 176 ~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~~~~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 252 (825)
++|++| ++++|++++.+|+.++ .+ ++|++|+|++|+|+ .+|..+. ++|+.|+|+
T Consensus 224 ~~L~~L-------------------~Ls~N~l~~~~p~~~~-~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls 280 (310)
T 4glp_A 224 VQPHSL-------------------DLSHNSLRATVNPSAP-RCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLS 280 (310)
T ss_dssp CCCSSE-------------------ECTTSCCCCCCCSCCS-SCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECC
T ss_pred CCCCEE-------------------ECCCCCCCccchhhHH-hccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECC
Confidence 777766 7788888877677665 44 68999999999998 4566654 789999999
Q ss_pred cccccCccccCcCCCCCCcEEEcccccCCC
Q 003368 253 GNNFFGKLSVNFGDMKSLAYLNVAINNLGS 282 (825)
Q Consensus 253 ~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~ 282 (825)
+|++.+. |. +..+++|+.|++++|+++.
T Consensus 281 ~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 281 SNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 9999875 22 6788999999999998864
No 279
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=99.89 E-value=2.3e-23 Score=223.36 Aligned_cols=174 Identities=24% Similarity=0.327 Sum_probs=138.7
Q ss_pred ccHHHHHhhcccccccceeccCCeeEEEEEEE-----cCCCeEEEEEEeecccc-hhHHHHHHHHHHhhcC-CCCCceeE
Q 003368 633 VSYESLLKATDGFSSTHLIGIGSFGSVYKGTF-----DRDGTIVAIKVLNLQLQ-GASKSFAAECRALRNI-RHRNLVRV 705 (825)
Q Consensus 633 ~~~~~~~~~~~~f~~~~~ig~G~~g~Vy~~~~-----~~~g~~vAvK~~~~~~~-~~~~~~~~E~~~l~~l-~H~niv~l 705 (825)
+...++....++|...+.||+|+||.||+|++ ..+++.||||++..... ...+.+.+|+++++++ +||||+++
T Consensus 17 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~ 96 (316)
T 2xir_A 17 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 96 (316)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred ccccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeE
Confidence 34445555667899999999999999999985 34678999999976543 3346789999999999 69999999
Q ss_pred eecccccccCCCCeeeEEEEccCCCChhhhccCCCCCCCc----ccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCe
Q 003368 706 ITSCSSIDFQGNDFKALVYQYMPNGSLENWLHPDAIPQTD----EENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPT 781 (825)
Q Consensus 706 ~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~----~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~i 781 (825)
+++|.. .+...++||||+++|+|.+++......... ........+++.++..++.|+++||+|||+. +|
T Consensus 97 ~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i 169 (316)
T 2xir_A 97 LGACTK----PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KC 169 (316)
T ss_dssp EEEECC----TTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHT---TC
T ss_pred EEEEec----CCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhC---Cc
Confidence 998643 244589999999999999999654211000 0000122388999999999999999999986 99
Q ss_pred eecCCCCCCeeecCCCcEEEcccCcccccccC
Q 003368 782 IHCDLKPSNILLDNNLTAHVGDFGLARLRQEV 813 (825)
Q Consensus 782 vHrdlk~~NILl~~~~~~ki~DFGla~~~~~~ 813 (825)
+||||||+||+++.++.+||+|||+|+.....
T Consensus 170 ~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~ 201 (316)
T 2xir_A 170 IHRDLAARNILLSEKNVVKICDFGLARDIYKD 201 (316)
T ss_dssp CCSCCSGGGEEECGGGCEEECCCGGGSCTTTC
T ss_pred ccccCccceEEECCCCCEEECCCccccccccC
Confidence 99999999999999999999999999976544
No 280
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=99.89 E-value=3.1e-23 Score=216.96 Aligned_cols=154 Identities=24% Similarity=0.398 Sum_probs=130.4
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc--chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCe
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL--QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDF 719 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~ 719 (825)
.++|...+.||+|+||.||+|++ +|+.||||++.... ....+.|.+|++++++++||||++++++|.. .....
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~--~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~---~~~~~ 83 (271)
T 3kmu_A 9 FKQLNFLTKLNENHSGELWKGRW--QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQS---PPAPH 83 (271)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEE--TTEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECT---TTSSS
T ss_pred HHHhHHHHHhcCCCcceEEEEEE--CCeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEcc---CCCCC
Confidence 35688899999999999999998 48999999997653 2345679999999999999999999998743 22356
Q ss_pred eeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcE
Q 003368 720 KALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTA 799 (825)
Q Consensus 720 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ 799 (825)
.++||||+++|+|.+++... ....+++.++..|+.|+++||+|||+. .++|+||||||+||+++.++.+
T Consensus 84 ~~lv~e~~~~~~L~~~l~~~----------~~~~~~~~~~~~i~~qi~~~l~~lH~~-~~~i~H~dikp~Nil~~~~~~~ 152 (271)
T 3kmu_A 84 PTLITHWMPYGSLYNVLHEG----------TNFVVDQSQAVKFALDMARGMAFLHTL-EPLIPRHALNSRSVMIDEDMTA 152 (271)
T ss_dssp CEEEEECCTTCBHHHHHHSC----------SSCCCCHHHHHHHHHHHHHHHHHHTTS-SSCCTTCCCSGGGEEECTTSCE
T ss_pred eEeeecccCCCcHHHHHhhc----------ccCCCCHHHHHHHHHHHHHHHHHHhcC-CCceecCCCccceEEEcCCcce
Confidence 79999999999999999642 113589999999999999999999985 2239999999999999999999
Q ss_pred EEcccCcccccc
Q 003368 800 HVGDFGLARLRQ 811 (825)
Q Consensus 800 ki~DFGla~~~~ 811 (825)
||+|||++....
T Consensus 153 ~l~~~~~~~~~~ 164 (271)
T 3kmu_A 153 RISMADVKFSFQ 164 (271)
T ss_dssp EEEGGGSCCTTS
T ss_pred eEEeccceeeec
Confidence 999999876543
No 281
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=99.89 E-value=1.8e-23 Score=244.52 Aligned_cols=144 Identities=26% Similarity=0.438 Sum_probs=125.2
Q ss_pred ceeccCCeeEEEEEEE--cCCCeEEEEEEeecccc--hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCeeeEEE
Q 003368 649 HLIGIGSFGSVYKGTF--DRDGTIVAIKVLNLQLQ--GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFKALVY 724 (825)
Q Consensus 649 ~~ig~G~~g~Vy~~~~--~~~g~~vAvK~~~~~~~--~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~~lv~ 724 (825)
+.||+|+||.||+|.+ ..+++.||||+++.... ...++|.+|++++++++|||||+++++|. .+..++||
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~------~~~~~lv~ 448 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICE------AESWMLVM 448 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEE------SSSEEEEE
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe------cCCEEEEE
Confidence 5799999999999965 45678999999976432 33578999999999999999999999863 23478999
Q ss_pred EccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcEEEccc
Q 003368 725 QYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTAHVGDF 804 (825)
Q Consensus 725 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ki~DF 804 (825)
||+++|+|.+++.. ...+++.++..|+.||+.||+|||+. +||||||||+|||++.++.+||+||
T Consensus 449 E~~~~g~L~~~l~~------------~~~l~~~~~~~i~~qi~~~L~yLH~~---~iiHrDLkp~NILl~~~~~~kL~DF 513 (635)
T 4fl3_A 449 EMAELGPLNKYLQQ------------NRHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDF 513 (635)
T ss_dssp ECCTTEEHHHHHHH------------CTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCT
T ss_pred EccCCCCHHHHHhh------------CCCCCHHHHHHHHHHHHHHHHHHHHC---CEeCCCCChHhEEEeCCCCEEEEEc
Confidence 99999999999942 24689999999999999999999986 8999999999999999999999999
Q ss_pred CcccccccC
Q 003368 805 GLARLRQEV 813 (825)
Q Consensus 805 Gla~~~~~~ 813 (825)
|+|+.....
T Consensus 514 Gla~~~~~~ 522 (635)
T 4fl3_A 514 GLSKALRAD 522 (635)
T ss_dssp THHHHTTC-
T ss_pred CCccccccC
Confidence 999987554
No 282
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=4.8e-25 Score=238.77 Aligned_cols=212 Identities=18% Similarity=0.254 Sum_probs=159.2
Q ss_pred CCceeeceeecCCCCcEEEEECCCCCCccccCcCCCCC--CCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCC
Q 003368 18 HFCDWEGITCSPRHRRVTVLDLKSKGLIGSLSPQIGNL--SFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGE 95 (825)
Q Consensus 18 ~~C~~~g~~c~~~~~~l~~l~L~~n~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 95 (825)
-|..|.++.|++. .++.+|++++++. +..+..+ ++++.|++++|.+.+..+. +..+++|++|+|++|.+++.
T Consensus 35 vc~~W~~~~~~~~--~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~ 108 (336)
T 2ast_B 35 VCKRWYRLASDES--LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS 108 (336)
T ss_dssp SCHHHHHHHTCST--TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH
T ss_pred HHHHHHHHhcCch--hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH
Confidence 4446999988653 5778999888876 4556666 8899999999999876665 55788999999999988866
Q ss_pred -CCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeecccc-ccccc-cCccCCCCCCCCEEEcccC-cCccc-CCc
Q 003368 96 -IPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQEN-NLTGG-IPHFLGNITSLEAISLAYN-SLGGN-IPS 170 (825)
Q Consensus 96 -~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~-~p~~~~~l~~L~~L~Ls~N-~l~~~-~p~ 170 (825)
+|..+..+++|++|+|++|++++..+..|..+++|++|+|++| .+++. ++..+.++++|++|+|++| .+++. ++.
T Consensus 109 ~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 188 (336)
T 2ast_B 109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 188 (336)
T ss_dssp HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence 7778888899999999999888878888888889999999988 67753 5666788888999999888 88753 455
Q ss_pred cccccc-ccceecCcCcCCccccCCCCCceeecCCc--ccc-ccCCchhhhcCCCCcEEEccccc-CCCCCCccccCCCC
Q 003368 171 SLGQLK-ELKSLGLGGTIPPSIYNLSLLANFSVPEN--RLH-GSLPPSLGLTLSNLQLFQISNNF-FSGSFPLAFSNASN 245 (825)
Q Consensus 171 ~~~~l~-~L~~L~L~~~~p~~i~~l~~l~~l~l~~N--~l~-~~lp~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~ 245 (825)
.+..++ +|++| ++++| .++ +.+|..+. .+++|+.|++++|. +++..+..+.++++
T Consensus 189 ~~~~l~~~L~~L-------------------~l~~~~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~l~~l~~ 248 (336)
T 2ast_B 189 AVAHVSETITQL-------------------NLSGYRKNLQKSDLSTLVR-RCPNLVHLDLSDSVMLKNDCFQEFFQLNY 248 (336)
T ss_dssp HHHHSCTTCCEE-------------------ECCSCGGGSCHHHHHHHHH-HCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred HHHhcccCCCEE-------------------EeCCCcccCCHHHHHHHHh-hCCCCCEEeCCCCCcCCHHHHHHHhCCCC
Confidence 566666 66666 55555 333 33444433 67777777777777 66556666777777
Q ss_pred ccEEEeeccc
Q 003368 246 LQSLEILGNN 255 (825)
Q Consensus 246 L~~L~L~~N~ 255 (825)
|+.|+|++|.
T Consensus 249 L~~L~l~~~~ 258 (336)
T 2ast_B 249 LQHLSLSRCY 258 (336)
T ss_dssp CCEEECTTCT
T ss_pred CCEeeCCCCC
Confidence 7777777774
No 283
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=99.89 E-value=2.4e-23 Score=226.20 Aligned_cols=153 Identities=18% Similarity=0.268 Sum_probs=124.6
Q ss_pred ccccccceeccCCeeEEEEEEEcC---CCeEEEEEEeecccch-----------hHHHHHHHHHHhhcCCCCCceeEeec
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDR---DGTIVAIKVLNLQLQG-----------ASKSFAAECRALRNIRHRNLVRVITS 708 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~---~g~~vAvK~~~~~~~~-----------~~~~~~~E~~~l~~l~H~niv~l~~~ 708 (825)
++|...+.||+|+||.||+|+... ++..||||+....... ..+.+.+|+..++.++||||++++++
T Consensus 37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~ 116 (345)
T 2v62_A 37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS 116 (345)
T ss_dssp CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence 568899999999999999999976 7889999998764321 12347788999999999999999998
Q ss_pred ccccccCCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCC
Q 003368 709 CSSIDFQGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKP 788 (825)
Q Consensus 709 ~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~ 788 (825)
+... +.+....++||||+ +|+|.+++... ..+++.++..|+.|+++||+|||+. +|+||||||
T Consensus 117 ~~~~-~~~~~~~~lv~e~~-~~~L~~~l~~~------------~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp 179 (345)
T 2v62_A 117 GLTE-FKGRSYRFMVMERL-GIDLQKISGQN------------GTFKKSTVLQLGIRMLDVLEYIHEN---EYVHGDIKA 179 (345)
T ss_dssp EEEE-SSSCEEEEEEEECE-EEEHHHHCBGG------------GBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSG
T ss_pred cccc-cCCCcEEEEEEecc-CCCHHHHHHhc------------CCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCcCH
Confidence 7542 34467889999999 99999998522 3789999999999999999999986 999999999
Q ss_pred CCeeecCCC--cEEEcccCccccccc
Q 003368 789 SNILLDNNL--TAHVGDFGLARLRQE 812 (825)
Q Consensus 789 ~NILl~~~~--~~ki~DFGla~~~~~ 812 (825)
+||+++.++ .+||+|||+|+.+..
T Consensus 180 ~NIll~~~~~~~~kL~Dfg~a~~~~~ 205 (345)
T 2v62_A 180 ANLLLGYKNPDQVYLADYGLSYRYCP 205 (345)
T ss_dssp GGEEEESSSTTSEEECCCTTCEESSG
T ss_pred HHEEEccCCCCcEEEEeCCCceeccc
Confidence 999999887 999999999987754
No 284
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=99.89 E-value=3.3e-23 Score=222.90 Aligned_cols=149 Identities=23% Similarity=0.341 Sum_probs=126.2
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc--------hhHHHHHHHHHHhhcCCCCCceeEeeccccccc
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ--------GASKSFAAECRALRNIRHRNLVRVITSCSSIDF 714 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~--------~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~ 714 (825)
++|...+.||+|+||.||+|+...+|+.||||++..... .....+.+|++++++++||||+++++++.
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~---- 85 (322)
T 2ycf_A 10 DEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD---- 85 (322)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEE----
T ss_pred hceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEc----
Confidence 568899999999999999999988999999999865421 12345889999999999999999999853
Q ss_pred CCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeec
Q 003368 715 QGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLD 794 (825)
Q Consensus 715 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~ 794 (825)
.+ ..++||||+++|+|.+++... ..+++.++..++.|++.||+|||+. +|+||||||+||+++
T Consensus 86 -~~-~~~lv~e~~~~~~L~~~~~~~------------~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~ 148 (322)
T 2ycf_A 86 -AE-DYYIVLELMEGGELFDKVVGN------------KRLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLS 148 (322)
T ss_dssp -SS-SEEEEEECCTTEETHHHHSTT------------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEES
T ss_pred -CC-ceEEEEecCCCCcHHHHHhcc------------CCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEe
Confidence 22 379999999999999988532 3688999999999999999999986 999999999999998
Q ss_pred CCCc---EEEcccCccccccc
Q 003368 795 NNLT---AHVGDFGLARLRQE 812 (825)
Q Consensus 795 ~~~~---~ki~DFGla~~~~~ 812 (825)
.++. +||+|||+++....
T Consensus 149 ~~~~~~~~kl~Dfg~~~~~~~ 169 (322)
T 2ycf_A 149 SQEEDCLIKITDFGHSKILGE 169 (322)
T ss_dssp SSSSSCCEEECCCTTCEECCC
T ss_pred cCCCCCeEEEccCccceeccc
Confidence 7654 99999999987644
No 285
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=99.89 E-value=2.7e-24 Score=229.15 Aligned_cols=153 Identities=29% Similarity=0.429 Sum_probs=117.7
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhc--CCCCCceeEeecccccccCCCCee
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRN--IRHRNLVRVITSCSSIDFQGNDFK 720 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~--l~H~niv~l~~~~~~~~~~~~~~~ 720 (825)
++|...+.||+|+||.||+|++ +|+.||||++... ..+.+.+|.+++.. ++||||+++++++.... ......
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~-~~~~~~ 76 (303)
T 3gxj_A 3 RTIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDN-GTWTQL 76 (303)
T ss_dssp GGCCCCEEEEECSSSEEEEC-C--TTSCEEEEECC-T---THHHHHHHHHHHTSTTCCC-CBCCEEEEEEEEC-SSSEEE
T ss_pred ceeeehhhccCCCCeEEEEEEE--cCcceEEEEeccc---chhhHHHHHHHHHHHhccCcceeeeeeecccCC-Ccccee
Confidence 4688999999999999999987 5889999998643 34567788888887 78999999999875421 111267
Q ss_pred eEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcC-----CCCeeecCCCCCCeeecC
Q 003368 721 ALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHC-----QEPTIHCDLKPSNILLDN 795 (825)
Q Consensus 721 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~-----~~~ivHrdlk~~NILl~~ 795 (825)
++||||+++|+|.+++.. ..+++.++..++.|++.|++|||... ..+|+||||||+|||++.
T Consensus 77 ~lv~e~~~~g~L~~~l~~-------------~~~~~~~~~~~~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nil~~~ 143 (303)
T 3gxj_A 77 WLVSDYHEHGSLFDYLNR-------------YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKK 143 (303)
T ss_dssp EEEEECCTTCCHHHHHHH-------------CCBCC-CHHHHC-CHHHHHC-CCCCBCSTTCBC-CCCSCCCGGGC-CCT
T ss_pred EEEEeccCCCCHHHHHhc-------------cCcchHHHHHHHHHHHHHHHHHHHHHhhhccCCCEeeCcCCHHHeEECC
Confidence 999999999999999842 24777888999999999999999211 259999999999999999
Q ss_pred CCcEEEcccCcccccccCC
Q 003368 796 NLTAHVGDFGLARLRQEVP 814 (825)
Q Consensus 796 ~~~~ki~DFGla~~~~~~~ 814 (825)
++.+||+|||+|+......
T Consensus 144 ~~~~kl~DFg~a~~~~~~~ 162 (303)
T 3gxj_A 144 NGTCCIADLGLAVRHDSAT 162 (303)
T ss_dssp TCCC-BCCCCC-CCEETTT
T ss_pred CCCEEEeecCcceeccCCC
Confidence 9999999999998765543
No 286
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=99.89 E-value=3.1e-23 Score=225.68 Aligned_cols=157 Identities=20% Similarity=0.300 Sum_probs=131.7
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchh-----------------HHHHHHHHHHhhcCCCCCcee
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGA-----------------SKSFAAECRALRNIRHRNLVR 704 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~-----------------~~~~~~E~~~l~~l~H~niv~ 704 (825)
.++|...+.||+|+||.||+|+. +|+.||||++....... .+.+.+|++++++++||||++
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~ 107 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK--DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLT 107 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE--TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCC
T ss_pred cCceEEEEEEcCCCCeEEEEEEc--CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcce
Confidence 46799999999999999999998 89999999997543211 178999999999999999999
Q ss_pred EeecccccccCCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHh-cCCCCeee
Q 003368 705 VITSCSSIDFQGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHH-HCQEPTIH 783 (825)
Q Consensus 705 l~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~-~~~~~ivH 783 (825)
+++++. ..+..++||||+++|+|.+++.....- .......+++..+..++.|++.||+|||+ . +|+|
T Consensus 108 ~~~~~~-----~~~~~~lv~e~~~~~~L~~~~~~~~~l----~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---~i~H 175 (348)
T 2pml_X 108 CEGIIT-----NYDEVYIIYEYMENDSILKFDEYFFVL----DKNYTCFIPIQVIKCIIKSVLNSFSYIHNEK---NICH 175 (348)
T ss_dssp CSEEEE-----SSSEEEEEEECCTTCBSSEESSSEESS----CSSSCCCCCHHHHHHHHHHHHHHHHHHHHTS---CEEC
T ss_pred EEEEEe-----eCCeEEEEEeccCCCcHHHHHHHhhhh----hhccccCCCHHHHHHHHHHHHHHHHHHhccC---CEee
Confidence 999854 356889999999999999994211000 00113578999999999999999999998 5 9999
Q ss_pred cCCCCCCeeecCCCcEEEcccCccccccc
Q 003368 784 CDLKPSNILLDNNLTAHVGDFGLARLRQE 812 (825)
Q Consensus 784 rdlk~~NILl~~~~~~ki~DFGla~~~~~ 812 (825)
|||||+||+++.++.+||+|||+++....
T Consensus 176 ~dl~p~Nil~~~~~~~kl~dfg~~~~~~~ 204 (348)
T 2pml_X 176 RDVKPSNILMDKNGRVKLSDFGESEYMVD 204 (348)
T ss_dssp CCCCGGGEEECTTSCEEECCCTTCEECBT
T ss_pred cCCChHhEEEcCCCcEEEecccccccccc
Confidence 99999999999999999999999987644
No 287
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=99.89 E-value=2.4e-23 Score=224.31 Aligned_cols=151 Identities=27% Similarity=0.477 Sum_probs=124.7
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEE----EEEEeeccc-chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCC
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIV----AIKVLNLQL-QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGN 717 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~v----AvK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 717 (825)
++|+..+.||+|+||.||+|++..+++.| |+|.+.... ....+.+.+|++++++++||||++++++|..
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~------ 88 (327)
T 3lzb_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT------ 88 (327)
T ss_dssp TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEES------
T ss_pred hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEec------
Confidence 56899999999999999999998787655 666664332 3456789999999999999999999998643
Q ss_pred CeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCC
Q 003368 718 DFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNL 797 (825)
Q Consensus 718 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~ 797 (825)
...++|+||+++|+|.+++... ...+++..+..|+.|+++||+|||+. +|+||||||+||+++.++
T Consensus 89 ~~~~~v~~~~~~g~L~~~l~~~-----------~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~ 154 (327)
T 3lzb_A 89 STVQLITQLMPFGCLLDYVREH-----------KDNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQ 154 (327)
T ss_dssp SSEEEEECCCSSCBHHHHHHHT-----------TTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETT
T ss_pred CCceEEEEecCCCcHHHHHHhc-----------CCCCCHHHHHHHHHHHHHHHHHHhhC---CCcCCCCCHHHEEEcCCC
Confidence 2378999999999999998532 24688999999999999999999986 899999999999999999
Q ss_pred cEEEcccCcccccccC
Q 003368 798 TAHVGDFGLARLRQEV 813 (825)
Q Consensus 798 ~~ki~DFGla~~~~~~ 813 (825)
.+||+|||+|+.....
T Consensus 155 ~~kL~DfG~a~~~~~~ 170 (327)
T 3lzb_A 155 HVKITDFGLAKLLGAE 170 (327)
T ss_dssp EEEECCTTC-------
T ss_pred CEEEccCcceeEccCc
Confidence 9999999999987543
No 288
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=99.89 E-value=3.5e-23 Score=224.72 Aligned_cols=160 Identities=26% Similarity=0.374 Sum_probs=129.2
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc--hhHHHHHHHHHHhhcCCC--CCceeEeecccccccCCC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ--GASKSFAAECRALRNIRH--RNLVRVITSCSSIDFQGN 717 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~--~~~~~~~~E~~~l~~l~H--~niv~l~~~~~~~~~~~~ 717 (825)
.+.|...+.||+|+||.||+|.. .+++.||||++..... ...+.+.+|++++++++| |||+++++++. .+
T Consensus 8 ~~~y~i~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~-----~~ 81 (343)
T 3dbq_A 8 GRIYSILKQIGSGGSSKVFQVLN-EKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEI-----TD 81 (343)
T ss_dssp SCEEEEEEEESCCSSEEEEEEEC-TTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEE-----CS
T ss_pred cCEEEEEEEEecCCCeEEEEEEe-CCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEe-----eC
Confidence 35688999999999999999998 5789999999975432 334678999999999987 99999999854 36
Q ss_pred CeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCC
Q 003368 718 DFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNL 797 (825)
Q Consensus 718 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~ 797 (825)
...++||| +.+|+|.+++.. ...+++.++..|+.|+++||+|||+. +|+||||||+|||++ ++
T Consensus 82 ~~~~lv~e-~~~~~L~~~l~~------------~~~~~~~~~~~i~~qi~~al~~lH~~---~iiHrDikp~NIll~-~~ 144 (343)
T 3dbq_A 82 QYIYMVME-CGNIDLNSWLKK------------KKSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DG 144 (343)
T ss_dssp SEEEEEEC-CCSEEHHHHHHH------------SCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEE-TT
T ss_pred CEEEEEEe-CCCCCHHHHHHh------------cCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEEE-CC
Confidence 68899999 568899999853 24688999999999999999999986 899999999999997 57
Q ss_pred cEEEcccCcccccccCCCC--CccccccC
Q 003368 798 TAHVGDFGLARLRQEVPNN--QSSSVGDL 824 (825)
Q Consensus 798 ~~ki~DFGla~~~~~~~~~--~~~~~gt~ 824 (825)
.+||+|||+|+........ ....+||+
T Consensus 145 ~~kl~DFG~a~~~~~~~~~~~~~~~~gt~ 173 (343)
T 3dbq_A 145 MLKLIDFGIANQMQPDTTSVVKDSQVGTV 173 (343)
T ss_dssp EEEECCCSSSCCC------------CCCC
T ss_pred cEEEeecccccccCcccccccCCCCcCCc
Confidence 8999999999987554322 23445664
No 289
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=99.89 E-value=5.6e-23 Score=225.60 Aligned_cols=153 Identities=24% Similarity=0.287 Sum_probs=126.1
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc--chhHHHHHHHHHHhhcCCCCCceeEeecccccc-cCCCC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL--QGASKSFAAECRALRNIRHRNLVRVITSCSSID-FQGND 718 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~-~~~~~ 718 (825)
.++|...+.||+|+||.||+|+...+|+.||||++.... ....+.+.+|+++++.++||||+++++++.... +.+..
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 103 (371)
T 2xrw_A 24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ 103 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence 467899999999999999999998899999999997543 234567889999999999999999999865321 12234
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..++||||+++ +|.+++. ..+++.++..++.|+++||+|||+. +|+||||||+|||++.++.
T Consensus 104 ~~~lv~e~~~~-~l~~~~~--------------~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIl~~~~~~ 165 (371)
T 2xrw_A 104 DVYIVMELMDA-NLCQVIQ--------------MELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCT 165 (371)
T ss_dssp EEEEEEECCSE-EHHHHHH--------------SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSC
T ss_pred ceEEEEEcCCC-CHHHHHh--------------hccCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCC
Confidence 68999999975 7877763 2478889999999999999999986 9999999999999999999
Q ss_pred EEEcccCccccccc
Q 003368 799 AHVGDFGLARLRQE 812 (825)
Q Consensus 799 ~ki~DFGla~~~~~ 812 (825)
+||+|||+|+....
T Consensus 166 ~kl~Dfg~a~~~~~ 179 (371)
T 2xrw_A 166 LKILDFGLARTAGT 179 (371)
T ss_dssp EEECCCCC------
T ss_pred EEEEEeeccccccc
Confidence 99999999987654
No 290
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=99.89 E-value=2.9e-23 Score=231.54 Aligned_cols=165 Identities=25% Similarity=0.347 Sum_probs=128.8
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeeccccccc-CCCCeee
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDF-QGNDFKA 721 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~-~~~~~~~ 721 (825)
..|...++||+|+||+||+|++..+|+.||||++..... .+.+|++++++++|||||+++++|..... .+..+.+
T Consensus 54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~----~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~ 129 (420)
T 1j1b_A 54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR----FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLN 129 (420)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEE
T ss_pred ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccch----hHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEE
Confidence 358889999999999999999988999999999865422 23479999999999999999998754211 2233467
Q ss_pred EEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCC-CcEE
Q 003368 722 LVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNN-LTAH 800 (825)
Q Consensus 722 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~-~~~k 800 (825)
+||||+++ ++.+.+... ......+++..+..++.|+++||+|||+. +|+||||||+|||++.+ +.+|
T Consensus 130 lv~e~~~~-~l~~~~~~~--------~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NILl~~~~~~~k 197 (420)
T 1j1b_A 130 LVLDYVPE-TVYRVARHY--------SRAKQTLPVIYVKLYMYQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLK 197 (420)
T ss_dssp EEEECCCE-EHHHHHHHH--------HHTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEEETTTTEEE
T ss_pred eehhcccc-cHHHHHHHH--------hhccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChhhEEEeCCCCeEE
Confidence 99999986 566555310 11235689999999999999999999985 99999999999999965 5789
Q ss_pred EcccCcccccccCCCCCccccccC
Q 003368 801 VGDFGLARLRQEVPNNQSSSVGDL 824 (825)
Q Consensus 801 i~DFGla~~~~~~~~~~~~~~gt~ 824 (825)
|+|||+|+....... ....+||+
T Consensus 198 l~DFG~a~~~~~~~~-~~~~~~t~ 220 (420)
T 1j1b_A 198 LCDFGSAKQLVRGEP-NVSYICSR 220 (420)
T ss_dssp ECCCTTCEECCTTCC-CCSCCSCT
T ss_pred eccchhhhhcccCCC-ceeeeeCC
Confidence 999999997654332 23345553
No 291
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=99.89 E-value=4.6e-23 Score=222.21 Aligned_cols=153 Identities=22% Similarity=0.301 Sum_probs=129.8
Q ss_pred cccccc-ceeccCCeeEEEEEEEcCCCeEEEEEEeecccc--hhHHHHHHHHHHhhcCC-CCCceeEeecccccccCCCC
Q 003368 643 DGFSST-HLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ--GASKSFAAECRALRNIR-HRNLVRVITSCSSIDFQGND 718 (825)
Q Consensus 643 ~~f~~~-~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~--~~~~~~~~E~~~l~~l~-H~niv~l~~~~~~~~~~~~~ 718 (825)
+.|... +.||+|+||.||+|+...+|+.||||++..... ...+++.+|++++.+++ ||||+++++++ ...+
T Consensus 28 ~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~-----~~~~ 102 (327)
T 3lm5_A 28 NFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVY-----ENTS 102 (327)
T ss_dssp HHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEE-----ECSS
T ss_pred hEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEE-----EeCC
Confidence 445555 889999999999999988999999999976432 33578999999999995 69999999985 3467
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecC---
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDN--- 795 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~--- 795 (825)
..++||||+++|+|.+++... ....+++.++..++.|++.||+|||+. +|+||||||+||+++.
T Consensus 103 ~~~lv~e~~~~~~L~~~~~~~----------~~~~~~~~~~~~i~~ql~~~L~~LH~~---givH~Dikp~NIl~~~~~~ 169 (327)
T 3lm5_A 103 EIILILEYAAGGEIFSLCLPE----------LAEMVSENDVIRLIKQILEGVYYLHQN---NIVHLDLKPQNILLSSIYP 169 (327)
T ss_dssp EEEEEEECCTTEEGGGGGSSC----------C-CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESCBTT
T ss_pred eEEEEEEecCCCcHHHHHHHh----------cccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCChHHEEEecCCC
Confidence 789999999999999998532 124689999999999999999999986 8999999999999988
Q ss_pred CCcEEEcccCcccccccC
Q 003368 796 NLTAHVGDFGLARLRQEV 813 (825)
Q Consensus 796 ~~~~ki~DFGla~~~~~~ 813 (825)
++.+||+|||+|+.....
T Consensus 170 ~~~~kL~Dfg~a~~~~~~ 187 (327)
T 3lm5_A 170 LGDIKIVDFGMSRKIGHA 187 (327)
T ss_dssp BCCEEECCGGGCEEC---
T ss_pred CCcEEEeeCccccccCCc
Confidence 789999999999987543
No 292
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=99.89 E-value=4.6e-23 Score=217.45 Aligned_cols=144 Identities=13% Similarity=0.051 Sum_probs=125.3
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc---hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCe
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ---GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDF 719 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~---~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~ 719 (825)
+.|...+.||+|+||.||+|++..+|+.||||++..... ...+.|.+|++.+++++||||+++++++. .++.
T Consensus 31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~-----~~~~ 105 (286)
T 3uqc_A 31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVH-----TRAG 105 (286)
T ss_dssp TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEE-----ETTE
T ss_pred CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEE-----ECCc
Confidence 468899999999999999999988899999999976533 23467999999999999999999999853 3567
Q ss_pred eeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcE
Q 003368 720 KALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTA 799 (825)
Q Consensus 720 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ 799 (825)
.|+||||+++|+|.+++... ....++.+|+.|++.||+|||+. +|+||||||+|||++.++.+
T Consensus 106 ~~lv~e~~~g~~L~~~l~~~--------------~~~~~~~~i~~ql~~aL~~lH~~---givH~Dikp~NIll~~~g~~ 168 (286)
T 3uqc_A 106 GLVVAEWIRGGSLQEVADTS--------------PSPVGAIRAMQSLAAAADAAHRA---GVALSIDHPSRVRVSIDGDV 168 (286)
T ss_dssp EEEEEECCCEEEHHHHHTTC--------------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEETTSCE
T ss_pred EEEEEEecCCCCHHHHHhcC--------------CChHHHHHHHHHHHHHHHHHHHC---CCccCCCCcccEEEcCCCCE
Confidence 89999999999999998421 24456788999999999999986 99999999999999999999
Q ss_pred EEcccCccc
Q 003368 800 HVGDFGLAR 808 (825)
Q Consensus 800 ki~DFGla~ 808 (825)
||+++|...
T Consensus 169 kl~~~~~~~ 177 (286)
T 3uqc_A 169 VLAYPATMP 177 (286)
T ss_dssp EECSCCCCT
T ss_pred EEEeccccC
Confidence 999887643
No 293
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=99.89 E-value=6.2e-23 Score=218.89 Aligned_cols=154 Identities=21% Similarity=0.353 Sum_probs=130.2
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc----chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL----QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGN 717 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~----~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 717 (825)
.++|...+.||+|+||.||+|....+++.||||++.... ....+.+.+|++++++++||||+++++++.. .+.
T Consensus 4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---~~~ 80 (305)
T 2wtk_C 4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYN---EEK 80 (305)
T ss_dssp -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEC---C--
T ss_pred ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEc---CCC
Confidence 357999999999999999999998899999999997542 2345679999999999999999999998642 334
Q ss_pred CeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCC
Q 003368 718 DFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNL 797 (825)
Q Consensus 718 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~ 797 (825)
...++||||+++| +.+++... ....+++..+..++.|+++||+|||+. +|+||||||+||+++.++
T Consensus 81 ~~~~lv~e~~~~~-l~~~~~~~----------~~~~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~NIl~~~~~ 146 (305)
T 2wtk_C 81 QKMYMVMEYCVCG-MQEMLDSV----------PEKRFPVCQAHGYFCQLIDGLEYLHSQ---GIVHKDIKPGNLLLTTGG 146 (305)
T ss_dssp -CEEEEEECCSEE-HHHHHHHS----------TTCSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTC
T ss_pred CeEEEEehhccCC-HHHHHHhC----------cccccCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEcCCC
Confidence 5789999999987 76766421 124689999999999999999999986 999999999999999999
Q ss_pred cEEEcccCccccccc
Q 003368 798 TAHVGDFGLARLRQE 812 (825)
Q Consensus 798 ~~ki~DFGla~~~~~ 812 (825)
.+||+|||+++....
T Consensus 147 ~~kl~dfg~~~~~~~ 161 (305)
T 2wtk_C 147 TLKISALGVAEALHP 161 (305)
T ss_dssp CEEECCCTTCEECCT
T ss_pred cEEeeccccccccCc
Confidence 999999999987653
No 294
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=99.89 E-value=3.5e-23 Score=218.08 Aligned_cols=153 Identities=24% Similarity=0.470 Sum_probs=129.1
Q ss_pred hcccccccceeccCCeeEEEEEEEcC---CCeEEEEEEeeccc-chhHHHHHHHHHHhhcCCCCCceeEeecccccccCC
Q 003368 641 ATDGFSSTHLIGIGSFGSVYKGTFDR---DGTIVAIKVLNLQL-QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQG 716 (825)
Q Consensus 641 ~~~~f~~~~~ig~G~~g~Vy~~~~~~---~g~~vAvK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~ 716 (825)
..++|...+.||+|+||.||+|++.. ++..||||.+.... ....+.|.+|++++++++||||+++++++.
T Consensus 10 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~------ 83 (281)
T 3cc6_A 10 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIE------ 83 (281)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEEC------
T ss_pred cccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEc------
Confidence 35678899999999999999998643 34569999997653 234578999999999999999999999853
Q ss_pred CCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCC
Q 003368 717 NDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNN 796 (825)
Q Consensus 717 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~ 796 (825)
.+..++||||+++|+|.+++.. ....+++..+..++.|+++||+|||+. +|+||||||+||+++.+
T Consensus 84 ~~~~~~v~e~~~~~~L~~~l~~-----------~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~ 149 (281)
T 3cc6_A 84 EEPTWIIMELYPYGELGHYLER-----------NKNSLKVLTLVLYSLQICKAMAYLESI---NCVHRDIAVRNILVASP 149 (281)
T ss_dssp SSSCEEEEECCTTCBHHHHHHH-----------HTTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEEET
T ss_pred CCCCEEEEecCCCCCHHHHHHh-----------ccccCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCccceEEECCC
Confidence 2346899999999999999842 224589999999999999999999985 89999999999999999
Q ss_pred CcEEEcccCcccccccC
Q 003368 797 LTAHVGDFGLARLRQEV 813 (825)
Q Consensus 797 ~~~ki~DFGla~~~~~~ 813 (825)
+.+||+|||+++.....
T Consensus 150 ~~~kl~Dfg~~~~~~~~ 166 (281)
T 3cc6_A 150 ECVKLGDFGLSRYIEDE 166 (281)
T ss_dssp TEEEECCCCGGGCC---
T ss_pred CcEEeCccCCCcccccc
Confidence 99999999999976543
No 295
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=99.89 E-value=3.6e-23 Score=219.18 Aligned_cols=151 Identities=25% Similarity=0.423 Sum_probs=128.4
Q ss_pred cccccccc-eeccCCeeEEEEEEE--cCCCeEEEEEEeecccc--hhHHHHHHHHHHhhcCCCCCceeEeecccccccCC
Q 003368 642 TDGFSSTH-LIGIGSFGSVYKGTF--DRDGTIVAIKVLNLQLQ--GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQG 716 (825)
Q Consensus 642 ~~~f~~~~-~ig~G~~g~Vy~~~~--~~~g~~vAvK~~~~~~~--~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~ 716 (825)
.++|...+ .||+|+||.||+|.+ ..+++.||||+++.... ...+++.+|++++++++||||++++++|.
T Consensus 15 ~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~------ 88 (291)
T 1xbb_A 15 RKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICE------ 88 (291)
T ss_dssp GGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEE------
T ss_pred chhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEC------
Confidence 45677777 999999999999954 55678999999975532 23568999999999999999999999862
Q ss_pred CCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCC
Q 003368 717 NDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNN 796 (825)
Q Consensus 717 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~ 796 (825)
.+..++||||+++|+|.+++... ..+++.++..++.|+++||+|||+. +|+||||||+||+++.+
T Consensus 89 ~~~~~lv~e~~~~~~L~~~l~~~------------~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nil~~~~ 153 (291)
T 1xbb_A 89 AESWMLVMEMAELGPLNKYLQQN------------RHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQ 153 (291)
T ss_dssp SSSEEEEEECCTTEEHHHHHHHC------------TTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEET
T ss_pred CCCcEEEEEeCCCCCHHHHHHhC------------cCCCHHHHHHHHHHHHHHHHHHHhC---CeEcCCCCcceEEEeCC
Confidence 35679999999999999998532 3588999999999999999999986 99999999999999999
Q ss_pred CcEEEcccCcccccccC
Q 003368 797 LTAHVGDFGLARLRQEV 813 (825)
Q Consensus 797 ~~~ki~DFGla~~~~~~ 813 (825)
+.+||+|||+++.....
T Consensus 154 ~~~kl~Dfg~~~~~~~~ 170 (291)
T 1xbb_A 154 HYAKISDFGLSKALRAD 170 (291)
T ss_dssp TEEEECCCTTCEECCTT
T ss_pred CcEEEccCCcceeeccC
Confidence 99999999999877544
No 296
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.89 E-value=5e-23 Score=224.00 Aligned_cols=208 Identities=17% Similarity=0.097 Sum_probs=156.5
Q ss_pred CCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCC-CcCCCCCCCCCE-EEcCCCCCCC
Q 003368 41 SKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEI-PGNLSYCSRLIG-LYLGRNKLEG 118 (825)
Q Consensus 41 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~-L~Ls~N~l~~ 118 (825)
+++++ .+|..+ .+++++|+|++|+|+.+.+++|.++++|++|+|++|++.+.+ +++|.++++|++ ++++.|+|+.
T Consensus 18 ~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~ 94 (350)
T 4ay9_X 18 ESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY 94 (350)
T ss_dssp STTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE
T ss_pred CCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc
Confidence 45554 566665 367999999999999776778999999999999999986654 467889988765 6677899998
Q ss_pred CCChhhhcccccceeeccccccccccCccCCCCCCCCEEEccc-CcCcccCCccccccc-ccceecCcCcCCccccCCCC
Q 003368 119 SIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAY-NSLGGNIPSSLGQLK-ELKSLGLGGTIPPSIYNLSL 196 (825)
Q Consensus 119 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~-~L~~L~L~~~~p~~i~~l~~ 196 (825)
+.|++|..+++|++|++++|++++..+..+....++..|++.+ |+++...+..|..+. .++.|
T Consensus 95 l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L--------------- 159 (350)
T 4ay9_X 95 INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL--------------- 159 (350)
T ss_dssp ECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEE---------------
T ss_pred cCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhh---------------
Confidence 8889999999999999999999977777787888888898865 567655556666654 34444
Q ss_pred CceeecCCccccccCCchhhhcCCCCcEEEccc-ccCCCCCCccccCCCCccEEEeecccccCccccCcCCCCCCcE
Q 003368 197 LANFSVPENRLHGSLPPSLGLTLSNLQLFQISN-NFFSGSFPLAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLAY 272 (825)
Q Consensus 197 l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 272 (825)
++++|+++ .+|...+ ...+|+.|++++ |.++.+.+.+|..+++|++|+|++|++....+..|.++++|+.
T Consensus 160 ----~L~~N~i~-~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~ 230 (350)
T 4ay9_X 160 ----WLNKNGIQ-EIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA 230 (350)
T ss_dssp ----ECCSSCCC-EECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEEC
T ss_pred ----cccccccc-CCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhh
Confidence 77777777 5666666 566788888864 6666655567888888888888888887666555554444443
No 297
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=99.89 E-value=3.2e-23 Score=219.37 Aligned_cols=157 Identities=20% Similarity=0.256 Sum_probs=121.4
Q ss_pred hcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccch--hHHHHHHHHHHhhcCCCCCceeEeecccccccCCCC
Q 003368 641 ATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQG--ASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGND 718 (825)
Q Consensus 641 ~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~ 718 (825)
..++|+..+.||+|+||.||+|+...+|+.||||++...... ..+.+.++...++.++||||+++++++. .++
T Consensus 5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~-----~~~ 79 (290)
T 3fme_A 5 KADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALF-----REG 79 (290)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSS
T ss_pred cHHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeee-----ccC
Confidence 346799999999999999999999899999999999765322 2234455566688899999999999864 356
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..++||||++ |+|.+++... ......+++..+..|+.|++.||+|||+. .+|+||||||+||+++.++.
T Consensus 80 ~~~lv~e~~~-~~l~~~l~~~--------~~~~~~~~~~~~~~i~~qi~~~l~~lH~~--~~i~H~dlkp~Nil~~~~~~ 148 (290)
T 3fme_A 80 DVWICMELMD-TSLDKFYKQV--------IDKGQTIPEDILGKIAVSIVKALEHLHSK--LSVIHRDVKPSNVLINALGQ 148 (290)
T ss_dssp SEEEEEECCS-EEHHHHHHHH--------HHTTCCCCHHHHHHHHHHHHHHHHHHHHH--SCCCCCCCSGGGCEECTTCC
T ss_pred CEEEEEehhc-cchHHHHHHH--------HhcCCCCCHHHHHHHHHHHHHHHHHHhhc--CCeecCCCCHHHEEECCCCC
Confidence 7899999997 5888877421 12235789999999999999999999984 38999999999999999999
Q ss_pred EEEcccCcccccccC
Q 003368 799 AHVGDFGLARLRQEV 813 (825)
Q Consensus 799 ~ki~DFGla~~~~~~ 813 (825)
+||+|||+|+.....
T Consensus 149 ~kl~Dfg~~~~~~~~ 163 (290)
T 3fme_A 149 VKMCDFGISGYLVDD 163 (290)
T ss_dssp EEBCCC---------
T ss_pred EEEeecCCccccccc
Confidence 999999999876543
No 298
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=99.89 E-value=1.7e-23 Score=222.98 Aligned_cols=160 Identities=26% Similarity=0.334 Sum_probs=117.8
Q ss_pred hcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc-chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCe
Q 003368 641 ATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL-QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDF 719 (825)
Q Consensus 641 ~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~ 719 (825)
..++|...+.||+|+||.||+|+...+++.||||++.... ....+++.+|++++++++||||+++++++. ..+.
T Consensus 13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~ 87 (303)
T 2vwi_A 13 NRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFV-----VKDE 87 (303)
T ss_dssp CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEE-----SSSC
T ss_pred chhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEe-----ecCC
Confidence 3567999999999999999999988889999999987543 234567889999999999999999999864 3567
Q ss_pred eeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcE
Q 003368 720 KALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTA 799 (825)
Q Consensus 720 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ 799 (825)
.++||||+++|+|.+++...... .......+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+
T Consensus 88 ~~lv~e~~~~~~L~~~l~~~~~~----~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~ 160 (303)
T 2vwi_A 88 LWLVMKLLSGGSVLDIIKHIVAK----GEHKSGVLDESTIATILREVLEGLEYLHKN---GQIHRDVKAGNILLGEDGSV 160 (303)
T ss_dssp EEEEEECCTTCBHHHHHHHHHHT----TTTTTCSSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCE
T ss_pred cEEEehhccCCchHHHHHHHhhc----cccccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCCChhhEEEcCCCCE
Confidence 89999999999999998521000 001124589999999999999999999986 89999999999999999999
Q ss_pred EEcccCccccccc
Q 003368 800 HVGDFGLARLRQE 812 (825)
Q Consensus 800 ki~DFGla~~~~~ 812 (825)
||+|||+++....
T Consensus 161 kl~dfg~~~~~~~ 173 (303)
T 2vwi_A 161 QIADFGVSAFLAT 173 (303)
T ss_dssp EECCCHHHHHCC-
T ss_pred EEEeccchheecc
Confidence 9999999987643
No 299
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=99.89 E-value=4.1e-23 Score=217.14 Aligned_cols=150 Identities=29% Similarity=0.465 Sum_probs=124.3
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCeee
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFKA 721 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~~ 721 (825)
.++|+..+.||+|+||.||+|+. +|+.||||+++... ..+.+.+|++++++++||||+++++++.. ..+..+
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~~iv~~~~~~~~----~~~~~~ 91 (278)
T 1byg_A 20 MKELKLLQTIGKGEFGDVMLGDY--RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVE----EKGGLY 91 (278)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEE--TTEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEECC----C--CCE
T ss_pred hhhceEEeEEecCCCceEEEEEE--cCCEEEEEEecchh--HHHHHHHHHHHHHhCCCCCEeeEEEEEEc----CCCceE
Confidence 46788999999999999999997 58999999987543 45679999999999999999999998642 344679
Q ss_pred EEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcEEE
Q 003368 722 LVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTAHV 801 (825)
Q Consensus 722 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ki 801 (825)
+||||+++|+|.+++.. .....+++..+..++.|+++|++|||+. +|+||||||+||+++.++.+||
T Consensus 92 lv~e~~~~~~L~~~l~~----------~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~l 158 (278)
T 1byg_A 92 IVTEYMAKGSLVDYLRS----------RGRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKV 158 (278)
T ss_dssp EEECCCTTEEHHHHHHH----------HHHHHCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEE
T ss_pred EEEecCCCCCHHHHHHh----------cccccCCHHHHHHHHHHHHHHHHHHHhC---CccccCCCcceEEEeCCCcEEE
Confidence 99999999999999842 1223488999999999999999999986 8999999999999999999999
Q ss_pred cccCccccccc
Q 003368 802 GDFGLARLRQE 812 (825)
Q Consensus 802 ~DFGla~~~~~ 812 (825)
+|||+++....
T Consensus 159 ~Dfg~~~~~~~ 169 (278)
T 1byg_A 159 SDFGLTKEASS 169 (278)
T ss_dssp CCCCC------
T ss_pred eeccccccccc
Confidence 99999986544
No 300
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=99.89 E-value=4.5e-23 Score=218.16 Aligned_cols=148 Identities=35% Similarity=0.535 Sum_probs=121.4
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc--hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCe
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ--GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDF 719 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~--~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~ 719 (825)
.+.|...+.||+|+||.||+|++.. .||||+++.... ...+.|.+|++++++++||||+++++++. ...
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~~~~~~---~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~------~~~ 93 (289)
T 3og7_A 23 DGQITVGQRIGSGSFGTVYKGKWHG---DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYST------APQ 93 (289)
T ss_dssp TTSCEEEEEEEECSSEEEEEEESSS---EEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC------SSS
T ss_pred ccceeeeeEecCCCCeEEEEEEEcC---ceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeecc------CCc
Confidence 4568889999999999999998732 599999975532 34567999999999999999999999742 345
Q ss_pred eeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcE
Q 003368 720 KALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTA 799 (825)
Q Consensus 720 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ 799 (825)
.++||||+++|+|.+++... ...+++.++..++.|+++||+|||+. +|+||||||+||+++.++.+
T Consensus 94 ~~lv~e~~~~~~L~~~l~~~-----------~~~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~Dlkp~Nil~~~~~~~ 159 (289)
T 3og7_A 94 LAIVTQWCEGSSLYHHLHAS-----------ETKFEMKKLIDIARQTARGMDYLHAK---SIIHRDLKSNNIFLHEDNTV 159 (289)
T ss_dssp CEEEEECCCEEEHHHHHTTC--------------CCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEE
T ss_pred cEEEEEecCCCcHHHHHhhc-----------cCCCCHHHHHHHHHHHHHHHHHHHhC---CcccccCccceEEECCCCCE
Confidence 79999999999999998532 24689999999999999999999986 89999999999999999999
Q ss_pred EEcccCccccccc
Q 003368 800 HVGDFGLARLRQE 812 (825)
Q Consensus 800 ki~DFGla~~~~~ 812 (825)
||+|||+|+....
T Consensus 160 kl~Dfg~~~~~~~ 172 (289)
T 3og7_A 160 KIGDFGLATEKSR 172 (289)
T ss_dssp EECCCC-------
T ss_pred EEccceecccccc
Confidence 9999999987653
No 301
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=99.89 E-value=4.4e-23 Score=223.00 Aligned_cols=167 Identities=23% Similarity=0.353 Sum_probs=134.5
Q ss_pred HhhcccccccceeccCCeeEEEEEEEcCCCe-----EEEEEEeecccc-hhHHHHHHHHHHhhcC-CCCCceeEeecccc
Q 003368 639 LKATDGFSSTHLIGIGSFGSVYKGTFDRDGT-----IVAIKVLNLQLQ-GASKSFAAECRALRNI-RHRNLVRVITSCSS 711 (825)
Q Consensus 639 ~~~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~-----~vAvK~~~~~~~-~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~ 711 (825)
....++|...+.||+|+||.||+|+...+++ .||||.+..... ...+.+.+|+++++++ +||||++++++|.
T Consensus 42 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~- 120 (333)
T 2i1m_A 42 EFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACT- 120 (333)
T ss_dssp BCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-
T ss_pred cCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEe-
Confidence 3445779999999999999999999866554 799999976543 3456799999999999 8999999999864
Q ss_pred cccCCCCeeeEEEEccCCCChhhhccCCCCC--CCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCC
Q 003368 712 IDFQGNDFKALVYQYMPNGSLENWLHPDAIP--QTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPS 789 (825)
Q Consensus 712 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~--~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~ 789 (825)
..+..++||||+++|+|.+++...... ...........+++.++..++.|++.||+|||+. +|+||||||+
T Consensus 121 ----~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~ 193 (333)
T 2i1m_A 121 ----HGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASK---NCIHRDVAAR 193 (333)
T ss_dssp ----SSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGG
T ss_pred ----cCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCcccc
Confidence 356789999999999999998532000 0000000123579999999999999999999986 9999999999
Q ss_pred CeeecCCCcEEEcccCcccccccC
Q 003368 790 NILLDNNLTAHVGDFGLARLRQEV 813 (825)
Q Consensus 790 NILl~~~~~~ki~DFGla~~~~~~ 813 (825)
||+++.++.+||+|||+|+.....
T Consensus 194 NIl~~~~~~~kl~Dfg~~~~~~~~ 217 (333)
T 2i1m_A 194 NVLLTNGHVAKIGDFGLARDIMND 217 (333)
T ss_dssp GCEEEGGGEEEBCCCGGGCCGGGC
T ss_pred eEEECCCCeEEECccccccccccc
Confidence 999999999999999999976544
No 302
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=99.89 E-value=6.8e-23 Score=222.37 Aligned_cols=153 Identities=29% Similarity=0.430 Sum_probs=128.1
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhc--CCCCCceeEeecccccccCCCCe
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRN--IRHRNLVRVITSCSSIDFQGNDF 719 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~--l~H~niv~l~~~~~~~~~~~~~~ 719 (825)
.++|...+.||+|+||.||+|++ +|+.||||++... ..+.+.+|++++.. ++||||+++++++.... .....
T Consensus 41 ~~~y~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~-~~~~~ 114 (342)
T 1b6c_B 41 ARTIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDN-GTWTQ 114 (342)
T ss_dssp HHHCEEEEEEEEETTEEEEEEEE--TTEEEEEEEECGG---GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCC-SSCCC
T ss_pred cccEEEEeeecCCCCcEEEEEEE--cCccEEEEEeCch---hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccC-Cccce
Confidence 45688999999999999999998 5899999998643 34567888888887 78999999999865311 11126
Q ss_pred eeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcC-----CCCeeecCCCCCCeeec
Q 003368 720 KALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHC-----QEPTIHCDLKPSNILLD 794 (825)
Q Consensus 720 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~-----~~~ivHrdlk~~NILl~ 794 (825)
.++||||+++|+|.+++.. ..+++.++..++.|+++||+|||... ..+|+||||||+||+++
T Consensus 115 ~~lv~e~~~~g~L~~~l~~-------------~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~ 181 (342)
T 1b6c_B 115 LWLVSDYHEHGSLFDYLNR-------------YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVK 181 (342)
T ss_dssp EEEEECCCTTCBHHHHHHH-------------CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEEC
T ss_pred eEEEEeecCCCcHHHHHhc-------------cCccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEEC
Confidence 8999999999999999842 25899999999999999999999310 24899999999999999
Q ss_pred CCCcEEEcccCcccccccC
Q 003368 795 NNLTAHVGDFGLARLRQEV 813 (825)
Q Consensus 795 ~~~~~ki~DFGla~~~~~~ 813 (825)
.++.+||+|||+|+.....
T Consensus 182 ~~~~~kL~Dfg~~~~~~~~ 200 (342)
T 1b6c_B 182 KNGTCCIADLGLAVRHDSA 200 (342)
T ss_dssp TTSCEEECCCTTCEEEETT
T ss_pred CCCCEEEEECCCceecccc
Confidence 9999999999999877654
No 303
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=99.89 E-value=7e-23 Score=219.89 Aligned_cols=150 Identities=31% Similarity=0.527 Sum_probs=129.5
Q ss_pred ccccceeccCCeeEEEEEEE----cCCCeEEEEEEeecccc-hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCe
Q 003368 645 FSSTHLIGIGSFGSVYKGTF----DRDGTIVAIKVLNLQLQ-GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDF 719 (825)
Q Consensus 645 f~~~~~ig~G~~g~Vy~~~~----~~~g~~vAvK~~~~~~~-~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~ 719 (825)
|...+.||+|+||.||+|.+ ..+|+.||||++..... ...+.+.+|++++++++||||+++++++.. .+...
T Consensus 33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~---~~~~~ 109 (318)
T 3lxp_A 33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCED---AGAAS 109 (318)
T ss_dssp EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE---TTTTE
T ss_pred HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEec---CCCce
Confidence 47889999999999988865 34789999999986543 345679999999999999999999998753 23467
Q ss_pred eeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcE
Q 003368 720 KALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTA 799 (825)
Q Consensus 720 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ 799 (825)
.++||||+++|+|.+++... .+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+
T Consensus 110 ~~lv~e~~~~~~L~~~l~~~-------------~~~~~~~~~i~~~l~~~l~~LH~~---~ivH~Dikp~Nil~~~~~~~ 173 (318)
T 3lxp_A 110 LQLVMEYVPLGSLRDYLPRH-------------SIGLAQLLLFAQQICEGMAYLHAQ---HYIHRDLAARNVLLDNDRLV 173 (318)
T ss_dssp EEEEECCCTTCBHHHHGGGS-------------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCE
T ss_pred EEEEEecccCCcHHHHHhhC-------------CCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEEcCCCCE
Confidence 89999999999999998532 488999999999999999999986 89999999999999999999
Q ss_pred EEcccCcccccccC
Q 003368 800 HVGDFGLARLRQEV 813 (825)
Q Consensus 800 ki~DFGla~~~~~~ 813 (825)
||+|||+|+.....
T Consensus 174 kl~Dfg~a~~~~~~ 187 (318)
T 3lxp_A 174 KIGDFGLAKAVPEG 187 (318)
T ss_dssp EECCGGGCEECCTT
T ss_pred EECCcccccccccc
Confidence 99999999987554
No 304
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=99.88 E-value=4.4e-23 Score=222.40 Aligned_cols=161 Identities=31% Similarity=0.553 Sum_probs=130.4
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEE--EEEEeeccc-chhHHHHHHHHHHhhcC-CCCCceeEeecccccccCCCC
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIV--AIKVLNLQL-QGASKSFAAECRALRNI-RHRNLVRVITSCSSIDFQGND 718 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~v--AvK~~~~~~-~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~~ 718 (825)
++|...+.||+|+||.||+|+...+|..+ |||.+.... ....+.+.+|+++++++ +||||+++++++. ..+
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~-----~~~ 99 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACE-----HRG 99 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEE-----ETT
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeee-----eCC
Confidence 56888999999999999999998888765 999987533 23445789999999999 8999999999864 356
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcc----cchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeec
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDE----ENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLD 794 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~----~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~ 794 (825)
..++||||+++|+|.+++.......... .......+++.++..++.|+++||+|||+. +|+||||||+||+++
T Consensus 100 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~ 176 (327)
T 1fvr_A 100 YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVG 176 (327)
T ss_dssp EEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEC
T ss_pred ceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCccceEEEc
Confidence 7899999999999999996431000000 001124689999999999999999999985 999999999999999
Q ss_pred CCCcEEEcccCcccccc
Q 003368 795 NNLTAHVGDFGLARLRQ 811 (825)
Q Consensus 795 ~~~~~ki~DFGla~~~~ 811 (825)
.++.+||+|||+++...
T Consensus 177 ~~~~~kL~Dfg~~~~~~ 193 (327)
T 1fvr_A 177 ENYVAKIADFGLSRGQE 193 (327)
T ss_dssp GGGCEEECCTTCEESSC
T ss_pred CCCeEEEcccCcCcccc
Confidence 99999999999998543
No 305
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=99.88 E-value=6.4e-23 Score=226.39 Aligned_cols=159 Identities=26% Similarity=0.387 Sum_probs=129.1
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc--chhHHHHHHHHHHhhcCC--CCCceeEeecccccccCCCC
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL--QGASKSFAAECRALRNIR--HRNLVRVITSCSSIDFQGND 718 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~--~~~~~~~~~E~~~l~~l~--H~niv~l~~~~~~~~~~~~~ 718 (825)
..|...+.||+|+||+||+|... +|+.||||++.... ....+.+.+|++++++++ |||||++++++. .++
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~-----~~~ 129 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQVLNE-KKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEI-----TDQ 129 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEECT-TCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEE-----CSS
T ss_pred CceEEEEEEccCCCeEEEEEEcC-CCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEe-----cCC
Confidence 45899999999999999999984 59999999997543 234568999999999997 599999999864 356
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..++||| +.+|+|.+++... ..+++.++..|+.|+++||+|||+. +|+||||||+|||++ ++.
T Consensus 130 ~~~lv~E-~~~~~L~~~l~~~------------~~~~~~~~~~i~~qi~~aL~~lH~~---~ivHrDlkp~NIll~-~~~ 192 (390)
T 2zmd_A 130 YIYMVME-CGNIDLNSWLKKK------------KSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGM 192 (390)
T ss_dssp EEEEEEE-CCSEEHHHHHHHC------------SSCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCCGGGEEES-SSC
T ss_pred EEEEEEe-cCCCCHHHHHHhc------------CCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHEEEE-CCe
Confidence 7899999 5688999998532 3678899999999999999999985 899999999999996 579
Q ss_pred EEEcccCcccccccCCCC--CccccccC
Q 003368 799 AHVGDFGLARLRQEVPNN--QSSSVGDL 824 (825)
Q Consensus 799 ~ki~DFGla~~~~~~~~~--~~~~~gt~ 824 (825)
+||+|||+|+........ ....+||+
T Consensus 193 ~kl~DFG~a~~~~~~~~~~~~~~~~gt~ 220 (390)
T 2zmd_A 193 LKLIDFGIANQMQPDTTSVVKDSQVGAV 220 (390)
T ss_dssp EEECCCSSSCCC---------CCSCCCG
T ss_pred EEEEecCccccccCCCccccCCCCCcCC
Confidence 999999999987554321 23445664
No 306
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=1.3e-22 Score=203.50 Aligned_cols=185 Identities=23% Similarity=0.254 Sum_probs=145.0
Q ss_pred CCceeeceeecCCCCcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCC
Q 003368 18 HFCDWEGITCSPRHRRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIP 97 (825)
Q Consensus 18 ~~C~~~g~~c~~~~~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 97 (825)
-.|.|.++.|.. +++. .+|..+ .++|++|+|++|++++..+..|+.+++|++|+|++|+|++..+
T Consensus 5 C~C~~~~v~c~~------------~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 69 (208)
T 2o6s_A 5 CSCSGTTVECYS------------QGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN 69 (208)
T ss_dssp CEEETTEEECCS------------SCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred CEECCCEEEecC------------CCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccCh
Confidence 357898888864 2332 344443 4589999999999998777788999999999999999998888
Q ss_pred cCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccCCcccccccc
Q 003368 98 GNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKE 177 (825)
Q Consensus 98 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 177 (825)
..|..+++|++|+|++|+|++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++
T Consensus 70 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 149 (208)
T 2o6s_A 70 GVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149 (208)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred hhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCC
Confidence 88899999999999999999877778899999999999999999887888899999999999999998766666777777
Q ss_pred cceecCcCcCCccccCCCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCC
Q 003368 178 LKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNAS 244 (825)
Q Consensus 178 L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 244 (825)
|++| ++++|.+.+ .+++|+.|+++.|+++|.+|..+++++
T Consensus 150 L~~L-------------------~l~~N~~~~--------~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 150 LQYI-------------------WLHDNPWDC--------TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp CCEE-------------------ECCSCCBCC--------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred ccEE-------------------EecCCCeec--------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 6666 555555543 344566666666666666666555544
No 307
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=99.88 E-value=5.7e-23 Score=222.82 Aligned_cols=155 Identities=21% Similarity=0.280 Sum_probs=129.4
Q ss_pred hcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc-hhHHHHHHHHHH-hhcCCCCCceeEeecccccccCCCC
Q 003368 641 ATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ-GASKSFAAECRA-LRNIRHRNLVRVITSCSSIDFQGND 718 (825)
Q Consensus 641 ~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~-~~~~~~~~E~~~-l~~l~H~niv~l~~~~~~~~~~~~~ 718 (825)
..++|...+.||+|+||+||+|+...+|+.||||++..... ...+++..|+.. ++.++||||++++++|. .++
T Consensus 49 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~-----~~~ 123 (340)
T 3an0_A 49 KADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALF-----REG 123 (340)
T ss_dssp CSSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCCHHHHHHHHHHHHHHTTCCCTTTCCEEEEEE-----CSS
T ss_pred ehhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCcHHHHHHHHHHHHHHhhcCCCcEEEEeeEEE-----eCC
Confidence 45678899999999999999999988999999999976532 334456666665 78899999999999864 356
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..++||||+++ +|.+++... ......+++..+..|+.|+++||+|||+. .+|+||||||+||+++.++.
T Consensus 124 ~~~lv~e~~~~-~L~~~l~~~--------~~~~~~l~~~~~~~i~~qi~~~l~~lH~~--~~ivH~Dlkp~NIl~~~~~~ 192 (340)
T 3an0_A 124 DVWICMELMDT-SLDKFYKQV--------IDKGQTIPEDILGKIAVSIVKALEHLHSK--LSVIHRDVKPSNVLINALGQ 192 (340)
T ss_dssp CEEEEECCCSE-EHHHHHHHH--------HHTSCCCCHHHHHHHHHHHHHHHHHHHHH--TCCCCCSCCSTTEEECSTTC
T ss_pred cEEEEHHHhhC-cHHHHHHHH--------HhcCCCCCHHHHHHHHHHHHHHHHHHhhc--CCeecCCCCHHHEEECCCCC
Confidence 78999999975 998887421 11235789999999999999999999973 38999999999999999999
Q ss_pred EEEcccCcccccc
Q 003368 799 AHVGDFGLARLRQ 811 (825)
Q Consensus 799 ~ki~DFGla~~~~ 811 (825)
+||+|||+++...
T Consensus 193 ~kl~Dfg~~~~~~ 205 (340)
T 3an0_A 193 VKMCDFGISGYLV 205 (340)
T ss_dssp EEECCCSHHHHHS
T ss_pred EEEeeCCCceecc
Confidence 9999999998764
No 308
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=99.88 E-value=1.1e-22 Score=214.91 Aligned_cols=151 Identities=26% Similarity=0.429 Sum_probs=128.8
Q ss_pred ccccccc-eeccCCeeEEEEEEEc--CCCeEEEEEEeeccc-chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCC
Q 003368 643 DGFSSTH-LIGIGSFGSVYKGTFD--RDGTIVAIKVLNLQL-QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGND 718 (825)
Q Consensus 643 ~~f~~~~-~ig~G~~g~Vy~~~~~--~~g~~vAvK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~ 718 (825)
++|...+ .||+|+||.||+|++. .+++.||||+++... ....+.+.+|++++++++||||+++++++. .+
T Consensus 9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~------~~ 82 (287)
T 1u59_A 9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQ------AE 82 (287)
T ss_dssp GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE------SS
T ss_pred HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEec------CC
Confidence 4455555 8999999999999863 468899999997653 334578999999999999999999999862 34
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..++||||+++|+|.+++... ...+++.++..++.|+++||+|||+. +|+||||||+||+++.++.
T Consensus 83 ~~~lv~e~~~~~~L~~~l~~~-----------~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~ 148 (287)
T 1u59_A 83 ALMLVMEMAGGGPLHKFLVGK-----------REEIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHY 148 (287)
T ss_dssp SEEEEEECCTTEEHHHHHTTC-----------TTTSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTE
T ss_pred CcEEEEEeCCCCCHHHHHHhC-----------CccCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCchheEEEcCCCC
Confidence 589999999999999998532 23589999999999999999999986 9999999999999999999
Q ss_pred EEEcccCcccccccC
Q 003368 799 AHVGDFGLARLRQEV 813 (825)
Q Consensus 799 ~ki~DFGla~~~~~~ 813 (825)
+||+|||+++.....
T Consensus 149 ~kl~Dfg~~~~~~~~ 163 (287)
T 1u59_A 149 AKISDFGLSKALGAD 163 (287)
T ss_dssp EEECCCTTCEECTTC
T ss_pred EEECcccceeeeccC
Confidence 999999999977543
No 309
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=1.5e-24 Score=239.57 Aligned_cols=263 Identities=19% Similarity=0.240 Sum_probs=141.0
Q ss_pred cCCccccCCCCCCEEECCCCcCCCCC----CcCCCCCCCCCEEEcCCC---CCCCCCChhh-------hcccccceeecc
Q 003368 71 KIPGEIGRLFRLEALYLSHNSLVGEI----PGNLSYCSRLIGLYLGRN---KLEGSIPSEF-------VSLYNLKELAIQ 136 (825)
Q Consensus 71 ~~p~~~~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~Ls~N---~l~~~~p~~~-------~~l~~L~~L~L~ 136 (825)
.++..+..+++|++|+|++|.|+... +..|..+++|++|+|++| ++++.+|..+ ..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 45555666666666666666666542 233556666666666664 3334445444 566777777777
Q ss_pred cccccc----ccCccCCCCCCCCEEEcccCcCcccCCcccccc-cccceecCcCcCCccccCCCCCceeecCCccccccC
Q 003368 137 ENNLTG----GIPHFLGNITSLEAISLAYNSLGGNIPSSLGQL-KELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSL 211 (825)
Q Consensus 137 ~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~l 211 (825)
+|.+++ .+|..+..+++|++|+|++|.++...+..+... ..+ ..|++.+
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l------------------------~~~~~~~-- 156 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL------------------------AVNKKAK-- 156 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHH------------------------HHHHHHH--
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHH------------------------hhhhhcc--
Confidence 777765 356666777777777777777764433333221 100 0011110
Q ss_pred CchhhhcCCCCcEEEcccccCC-CCCC---ccccCCCCccEEEeecccccCccccCcCCCCCCcEEEcccccCCCCCCCc
Q 003368 212 PPSLGLTLSNLQLFQISNNFFS-GSFP---LAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLAYLNVAINNLGSGESDE 287 (825)
Q Consensus 212 p~~~~~~l~~L~~L~Ls~N~l~-~~~p---~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~ 287 (825)
..++|++|+|++|.++ +.+| ..|..+++|+.|+|++|++...--.
T Consensus 157 ------~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~------------------------- 205 (386)
T 2ca6_A 157 ------NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIE------------------------- 205 (386)
T ss_dssp ------TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHH-------------------------
T ss_pred ------cCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHH-------------------------
Confidence 1144555555555544 2222 2344555566666666655311000
Q ss_pred cccccccccCCCCCEEEcccccccccCCCCcccccCCccccCCCCcCEEEcccCccccc----CCcccc--CCCCCCEEE
Q 003368 288 MSFIHSLANCSNLSFLNLVANQFKGALPHSIVSGSIPSEIGKLVSLYLIEMDHNQFEGK----IPEEMS--RLQNLQFLN 361 (825)
Q Consensus 288 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l~~l~~L~~L~L~~N~l~~~----~p~~~~--~l~~L~~L~ 361 (825)
...+..+..+++|+.|+|++|.++... .+.+|..+..+++|+.|+|++|.+++. +|..+. .+++|++|+
T Consensus 206 ~l~~~~l~~~~~L~~L~Ls~n~l~~~g-----~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~ 280 (386)
T 2ca6_A 206 HLLLEGLAYCQELKVLDLQDNTFTHLG-----SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLR 280 (386)
T ss_dssp HHHHTTGGGCTTCCEEECCSSCCHHHH-----HHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEE
T ss_pred HHHHHHhhcCCCccEEECcCCCCCcHH-----HHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEE
Confidence 000113344455555555555553100 003455556666666666666666654 455553 367777777
Q ss_pred cccccccc----ccCccc-cCCCCCcEEEcccCcccccc
Q 003368 362 MRHNQLSG----EIPSSF-GNLSSLVKLILGNNNLSGVI 395 (825)
Q Consensus 362 Ls~N~l~~----~~p~~~-~~l~~L~~L~Ls~N~l~~~~ 395 (825)
|++|.+.+ .+|..+ .++++|++|+|++|++++..
T Consensus 281 L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 281 LQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 77777775 366655 55677777777777777544
No 310
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=99.88 E-value=1e-22 Score=223.40 Aligned_cols=153 Identities=24% Similarity=0.355 Sum_probs=125.9
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc--hhHHHHHHHHHHhhcCCCCCceeEeeccccccc-CCCC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ--GASKSFAAECRALRNIRHRNLVRVITSCSSIDF-QGND 718 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~--~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~-~~~~ 718 (825)
.++|...+.||+|+||.||+|+...+|+.||||++..... ...+.+.+|++++++++||||+++++++..... ....
T Consensus 41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 120 (371)
T 4exu_A 41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 120 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence 3578889999999999999999989999999999976432 235678899999999999999999998653211 0111
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..++||||+. |+|.+++. ..+++.++..++.|++.||+|||+. +|+||||||+||+++.++.
T Consensus 121 ~~~lv~e~~~-~~l~~~~~--------------~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~ 182 (371)
T 4exu_A 121 DFYLVMPFMQ-TDLQKIMG--------------MEFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCE 182 (371)
T ss_dssp CCEEEEECCC-EEHHHHTT--------------SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCC
T ss_pred eEEEEEcccc-ccHHHHhh--------------cCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCcCHHHeEECCCCC
Confidence 2499999997 68887763 2488999999999999999999986 9999999999999999999
Q ss_pred EEEcccCccccccc
Q 003368 799 AHVGDFGLARLRQE 812 (825)
Q Consensus 799 ~ki~DFGla~~~~~ 812 (825)
+||+|||+|+....
T Consensus 183 ~kL~Dfg~a~~~~~ 196 (371)
T 4exu_A 183 LKILDFGLARHADA 196 (371)
T ss_dssp EEECSTTCC-----
T ss_pred EEEEecCccccccc
Confidence 99999999987644
No 311
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=99.88 E-value=5.3e-23 Score=221.77 Aligned_cols=158 Identities=27% Similarity=0.417 Sum_probs=127.3
Q ss_pred cccccccceeccCCeeEEEEEE-----EcCCCeEEEEEEeeccc-chhHHHHHHHHHHhhcCCCCCceeEeecccccccC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGT-----FDRDGTIVAIKVLNLQL-QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQ 715 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~-----~~~~g~~vAvK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~ 715 (825)
.++|...+.||+|+||.||+|+ ...+++.||||++.... ....+.+.+|+.++++++||||+++++++.
T Consensus 29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~----- 103 (327)
T 2yfx_A 29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSL----- 103 (327)
T ss_dssp GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-----
T ss_pred hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEc-----
Confidence 3578899999999999999999 44577899999997543 334567999999999999999999999854
Q ss_pred CCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecC
Q 003368 716 GNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDN 795 (825)
Q Consensus 716 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~ 795 (825)
.....++||||+++|+|.+++...... ......+++.++..++.|++.||+|||+. +|+||||||+||+++.
T Consensus 104 ~~~~~~lv~e~~~~~~L~~~l~~~~~~-----~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~i~H~dlkp~NIli~~ 175 (327)
T 2yfx_A 104 QSLPRFILMELMAGGDLKSFLRETRPR-----PSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTC 175 (327)
T ss_dssp SSSSCEEEEECCTTEEHHHHHHHTSCC-----SSSTTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESC
T ss_pred CCCCcEEEEecCCCCcHHHHHHhhccc-----ccccccccHHHHHHHHHHHHHHHHHHhhC---CeecCcCCHhHEEEec
Confidence 356679999999999999999643211 11124589999999999999999999986 8999999999999984
Q ss_pred ---CCcEEEcccCccccccc
Q 003368 796 ---NLTAHVGDFGLARLRQE 812 (825)
Q Consensus 796 ---~~~~ki~DFGla~~~~~ 812 (825)
+..+||+|||+++....
T Consensus 176 ~~~~~~~kl~Dfg~~~~~~~ 195 (327)
T 2yfx_A 176 PGPGRVAKIGDFGMARDIYR 195 (327)
T ss_dssp SSTTCCEEECCCHHHHHHHC
T ss_pred CCCcceEEECcccccccccc
Confidence 44699999999986544
No 312
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.88 E-value=8.8e-23 Score=241.88 Aligned_cols=153 Identities=24% Similarity=0.325 Sum_probs=127.7
Q ss_pred ccccccceeccCCeeEEEEEEEcC-CCeEEEEEEeeccc-chhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCee
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDR-DGTIVAIKVLNLQL-QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFK 720 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~-~g~~vAvK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~ 720 (825)
++|...+.||+|+||+||+|++.. +|+.||||++.... ....+.|.+|++++++++|||||+++++|......+....
T Consensus 80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~ 159 (681)
T 2pzi_A 80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVG 159 (681)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCcee
Confidence 578999999999999999999965 78999999986543 2345678999999999999999999999765322222236
Q ss_pred eEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcEE
Q 003368 721 ALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTAH 800 (825)
Q Consensus 721 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~k 800 (825)
|+||||+++|+|.+++. ..++|.++..|+.||++||+|||+. +||||||||+|||++.+ .+|
T Consensus 160 ~lv~E~~~g~~L~~~~~--------------~~l~~~~~~~~~~qi~~aL~~lH~~---giiHrDlkp~NIll~~~-~~k 221 (681)
T 2pzi_A 160 YIVMEYVGGQSLKRSKG--------------QKLPVAEAIAYLLEILPALSYLHSI---GLVYNDLKPENIMLTEE-QLK 221 (681)
T ss_dssp EEEEECCCCEECC------------------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSS-CEE
T ss_pred EEEEEeCCCCcHHHHHh--------------CCCCHHHHHHHHHHHHHHHHHHHHC---CCeecccChHHeEEeCC-cEE
Confidence 99999999999987763 1589999999999999999999986 89999999999999986 899
Q ss_pred EcccCcccccccC
Q 003368 801 VGDFGLARLRQEV 813 (825)
Q Consensus 801 i~DFGla~~~~~~ 813 (825)
|+|||+++.....
T Consensus 222 l~DFG~a~~~~~~ 234 (681)
T 2pzi_A 222 LIDLGAVSRINSF 234 (681)
T ss_dssp ECCCTTCEETTCC
T ss_pred EEecccchhcccC
Confidence 9999999976543
No 313
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=99.88 E-value=1.2e-22 Score=215.43 Aligned_cols=152 Identities=26% Similarity=0.421 Sum_probs=127.6
Q ss_pred hcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCee
Q 003368 641 ATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFK 720 (825)
Q Consensus 641 ~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~ 720 (825)
..++|...+.||+|+||.||+|+...+|+.||||++..... .+.+.+|++++++++|++++..+++|. ...+..
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~----~~~~~~ 80 (296)
T 4hgt_A 7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCG----AEGDYN 80 (296)
T ss_dssp ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEE----EETTEE
T ss_pred cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccccc--chHHHHHHHHHHHhcCCCCCCeeeeec----CCCCce
Confidence 34679999999999999999999988999999998765432 235789999999999999888887763 345678
Q ss_pred eEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeee---cCCC
Q 003368 721 ALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILL---DNNL 797 (825)
Q Consensus 721 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl---~~~~ 797 (825)
++||||+ +|+|.+++... ...+++.++..++.|++.||+|||+. +|+||||||+||++ +.++
T Consensus 81 ~lv~e~~-~~~L~~~~~~~-----------~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~~ 145 (296)
T 4hgt_A 81 VMVMELL-GPSLEDLFNFC-----------SRKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGN 145 (296)
T ss_dssp EEEEECC-CCBHHHHHHHT-----------TSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECCGGGTT
T ss_pred EEEEEcc-CCCHHHHHHHh-----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeeeeccCCCC
Confidence 9999999 99999998521 23589999999999999999999986 89999999999999 7889
Q ss_pred cEEEcccCcccccccC
Q 003368 798 TAHVGDFGLARLRQEV 813 (825)
Q Consensus 798 ~~ki~DFGla~~~~~~ 813 (825)
.+||+|||+|+.....
T Consensus 146 ~~kL~Dfg~a~~~~~~ 161 (296)
T 4hgt_A 146 LVYIIDFGLAKKYRDA 161 (296)
T ss_dssp CEEECCCTTCEECBCT
T ss_pred eEEEecCccceeccCc
Confidence 9999999999987654
No 314
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=99.88 E-value=1.6e-22 Score=214.66 Aligned_cols=152 Identities=26% Similarity=0.419 Sum_probs=131.0
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCeee
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFKA 721 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~~ 721 (825)
.++|...+.||+|+||.||+|+...+|+.||||++..... .+++.+|++++++++|++++..+.+|. ......+
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~----~~~~~~~ 81 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCG----AEGDYNV 81 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS--CCHHHHHHHHHHHHTTSTTCCCEEEEE----EETTEEE
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc--hhHHHHHHHHHHHhhcCCCCCcccccc----CCCCceE
Confidence 4679999999999999999999988999999999875432 346889999999999999887777653 2456789
Q ss_pred EEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeee---cCCCc
Q 003368 722 LVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILL---DNNLT 798 (825)
Q Consensus 722 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl---~~~~~ 798 (825)
+||||+ +|+|.+++... ...+++.++..++.|++.||+|||+. +|+||||||+||++ +.++.
T Consensus 82 lv~e~~-~~~L~~~~~~~-----------~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~ 146 (296)
T 3uzp_A 82 MVMELL-GPSLEDLFNFC-----------SRKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNL 146 (296)
T ss_dssp EEEECC-CCBHHHHHHHT-----------TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTC
T ss_pred EEEEec-CCCHHHHHHhh-----------ccCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHeEEecCCCCCe
Confidence 999999 99999998521 23689999999999999999999986 99999999999999 58889
Q ss_pred EEEcccCcccccccCC
Q 003368 799 AHVGDFGLARLRQEVP 814 (825)
Q Consensus 799 ~ki~DFGla~~~~~~~ 814 (825)
+||+|||+|+......
T Consensus 147 ~kl~Dfg~~~~~~~~~ 162 (296)
T 3uzp_A 147 VYIIDFGLAKKYRDAR 162 (296)
T ss_dssp EEECCCTTCEECBCTT
T ss_pred EEEeeCCCcccccccc
Confidence 9999999999876543
No 315
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=99.88 E-value=1.3e-22 Score=226.67 Aligned_cols=151 Identities=25% Similarity=0.394 Sum_probs=127.8
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcC------CCCCceeEeecccccccC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNI------RHRNLVRVITSCSSIDFQ 715 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l------~H~niv~l~~~~~~~~~~ 715 (825)
..+|+..+.||+|+||+||+|+...+++.||||+++.. ....+++.+|+++++.+ +|+||+++++++.
T Consensus 96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~----- 169 (429)
T 3kvw_A 96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE-KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFT----- 169 (429)
T ss_dssp TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEE-----
T ss_pred cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc-cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecc-----
Confidence 34688999999999999999999889999999999754 23345677888888776 5779999999854
Q ss_pred CCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecC
Q 003368 716 GNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDN 795 (825)
Q Consensus 716 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~ 795 (825)
.....++||||+. |+|.+++... ....++|..+..|+.|+++||+|||+. +||||||||+|||++.
T Consensus 170 ~~~~~~lv~e~~~-~~L~~~l~~~----------~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NILl~~ 235 (429)
T 3kvw_A 170 FRNHICMTFELLS-MNLYELIKKN----------KFQGFSLPLVRKFAHSILQCLDALHKN---RIIHCDLKPENILLKQ 235 (429)
T ss_dssp ETTEEEEEECCCC-CBHHHHHHHT----------TTCCCCHHHHHHHHHHHHHHHHHHHHH---TEECSCCSGGGEEESS
T ss_pred cCCeEEEEEeccC-CCHHHHHHhc----------cCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEcc
Confidence 3567899999996 6999988532 123589999999999999999999986 8999999999999999
Q ss_pred CCc--EEEcccCccccccc
Q 003368 796 NLT--AHVGDFGLARLRQE 812 (825)
Q Consensus 796 ~~~--~ki~DFGla~~~~~ 812 (825)
++. +||+|||+|+....
T Consensus 236 ~~~~~vkL~DFG~a~~~~~ 254 (429)
T 3kvw_A 236 QGRSGIKVIDFGSSCYEHQ 254 (429)
T ss_dssp TTSCCEEECCCTTCEETTC
T ss_pred CCCcceEEeecccceecCC
Confidence 887 99999999987543
No 316
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=99.88 E-value=1.2e-22 Score=216.00 Aligned_cols=151 Identities=24% Similarity=0.368 Sum_probs=127.4
Q ss_pred cccccc-ceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHh-hcCCCCCceeEeecccccccCCCCee
Q 003368 643 DGFSST-HLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRAL-RNIRHRNLVRVITSCSSIDFQGNDFK 720 (825)
Q Consensus 643 ~~f~~~-~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l-~~l~H~niv~l~~~~~~~~~~~~~~~ 720 (825)
++|... ++||+|+||.||+|+...+|+.||||+++.. ..+.+|++++ +..+||||+++++++... +.+....
T Consensus 17 ~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~-~~~~~~~ 90 (299)
T 3m2w_A 17 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENL-YAGRKCL 90 (299)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEE-ETTEEEE
T ss_pred cchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEeccc-----HHHHHHHHHHHHhccCCCchhHHhhhhhh-cCCCceE
Confidence 456665 7899999999999999899999999998642 4567888888 566899999999986431 2235568
Q ss_pred eEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecC---CC
Q 003368 721 ALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDN---NL 797 (825)
Q Consensus 721 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~---~~ 797 (825)
++||||+++|+|.+++... ....+++.++..++.|++.||+|||+. +|+||||||+||+++. ++
T Consensus 91 ~lv~e~~~~~~L~~~l~~~----------~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~ 157 (299)
T 3m2w_A 91 LIVMECLDGGELFSRIQDR----------GDQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNA 157 (299)
T ss_dssp EEEECCCCSCBHHHHHHHC----------TTCCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTC
T ss_pred EEEEeecCCCcHHHHHHhc----------cCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEecCCCCC
Confidence 9999999999999998532 123589999999999999999999985 8999999999999998 78
Q ss_pred cEEEcccCccccccc
Q 003368 798 TAHVGDFGLARLRQE 812 (825)
Q Consensus 798 ~~ki~DFGla~~~~~ 812 (825)
.+||+|||+|+....
T Consensus 158 ~~kl~Dfg~a~~~~~ 172 (299)
T 3m2w_A 158 ILKLTDFGFAKETTG 172 (299)
T ss_dssp CEEECCCTTCEECTT
T ss_pred cEEEecccccccccc
Confidence 999999999987654
No 317
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=99.88 E-value=7.3e-23 Score=224.78 Aligned_cols=155 Identities=11% Similarity=0.039 Sum_probs=112.8
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc---hhHHHHHHHH---HHhhcCCCCCceeEeeccc----c
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ---GASKSFAAEC---RALRNIRHRNLVRVITSCS----S 711 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~---~~~~~~~~E~---~~l~~l~H~niv~l~~~~~----~ 711 (825)
...|...+.||+|+||.||+|++..+|+.||||++..... ...+.+.+|+ +.++. +||||++++..+. .
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~-~hp~iv~~~~~~~~p~d~ 139 (371)
T 3q60_A 61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLG-ESPEEARDRRRLLLPSDA 139 (371)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC-----------CBCCCCEE
T ss_pred ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcc-cChhhhhhceeEEeeehh
Confidence 4458889999999999999999988999999999987542 2345677785 55555 7999888553321 0
Q ss_pred cccCC---------------CCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHH------HHHHHHHHHHH
Q 003368 712 IDFQG---------------NDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLER------ISIAIDVASAV 770 (825)
Q Consensus 712 ~~~~~---------------~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~------~~i~~~va~~l 770 (825)
....+ ....++||||++ |+|.+++... ...+.+..+ ..++.|+++||
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~-----------~~~~~~~~~~~~~vk~~i~~qi~~aL 207 (371)
T 3q60_A 140 VAVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTL-----------DFVYVFRGDEGILALHILTAQLIRLA 207 (371)
T ss_dssp EEETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHH-----------HHSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred eecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHh-----------ccccchhhhhhhhhHHHHHHHHHHHH
Confidence 00000 034799999999 8999999531 123455556 78889999999
Q ss_pred HHHHhcCCCCeeecCCCCCCeeecCCCcEEEcccCccccccc
Q 003368 771 DYLHHHCQEPTIHCDLKPSNILLDNNLTAHVGDFGLARLRQE 812 (825)
Q Consensus 771 ~yLH~~~~~~ivHrdlk~~NILl~~~~~~ki~DFGla~~~~~ 812 (825)
+|||+. +||||||||+|||++.++.+||+|||+|+....
T Consensus 208 ~~LH~~---~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~ 246 (371)
T 3q60_A 208 ANLQSK---GLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGT 246 (371)
T ss_dssp HHHHHT---TEEETTCSGGGEEECTTSCEEECCGGGEEETTC
T ss_pred HHHHHC---CCccCcCCHHHEEECCCCCEEEEecceeeecCC
Confidence 999986 899999999999999999999999999997643
No 318
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=99.88 E-value=1.7e-22 Score=220.22 Aligned_cols=153 Identities=24% Similarity=0.354 Sum_probs=127.2
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc--hhHHHHHHHHHHhhcCCCCCceeEeeccccccc-CCCC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ--GASKSFAAECRALRNIRHRNLVRVITSCSSIDF-QGND 718 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~--~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~-~~~~ 718 (825)
.++|...+.||+|+||.||+|++..+|+.||||++..... ...+.+.+|+.++++++||||+++++++..... ....
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 102 (353)
T 3coi_A 23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 102 (353)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence 3568889999999999999999988999999999975432 235678999999999999999999998643110 0112
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..++||||++ |+|.+++. ..+++.++..++.|+++||+|||+. +|+||||||+||+++.++.
T Consensus 103 ~~~lv~e~~~-~~l~~~~~--------------~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~dlkp~NIl~~~~~~ 164 (353)
T 3coi_A 103 DFYLVMPFMQ-TDLQKIMG--------------LKFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCE 164 (353)
T ss_dssp CCEEEEECCS-EEGGGTTT--------------SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTCC
T ss_pred eEEEEecccc-CCHHHHhc--------------CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEeECCCCc
Confidence 3599999997 68887763 2488999999999999999999986 8999999999999999999
Q ss_pred EEEcccCccccccc
Q 003368 799 AHVGDFGLARLRQE 812 (825)
Q Consensus 799 ~ki~DFGla~~~~~ 812 (825)
+||+|||+++....
T Consensus 165 ~kl~Dfg~~~~~~~ 178 (353)
T 3coi_A 165 LKILDFGLARHADA 178 (353)
T ss_dssp EEECSTTCTTC---
T ss_pred EEEeecccccCCCC
Confidence 99999999987543
No 319
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1e-23 Score=228.38 Aligned_cols=121 Identities=17% Similarity=0.208 Sum_probs=90.5
Q ss_pred CCCEEEcCCCcccccCCccccCC--CCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCC-CChhhhccccccee
Q 003368 57 FLREIHLSNNTIQGKIPGEIGRL--FRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGS-IPSEFVSLYNLKEL 133 (825)
Q Consensus 57 ~L~~L~Ls~N~l~~~~p~~~~~l--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L 133 (825)
.++.||+++|.+. |..+..+ .+++.|++++|.+++..+. +..+++|++|+|++|.+++. +|..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4788889888876 5666666 7888889988888877665 45688888888888888765 77778888888888
Q ss_pred eccccccccccCccCCCCCCCCEEEcccC-cCcc-cCCccccccccccee
Q 003368 134 AIQENNLTGGIPHFLGNITSLEAISLAYN-SLGG-NIPSSLGQLKELKSL 181 (825)
Q Consensus 134 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~-~~p~~~~~l~~L~~L 181 (825)
+|++|++++..+..|+.+++|++|+|++| .+++ .++..+..+++|++|
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L 173 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 173 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEE
Confidence 88888888777777888888888888888 5654 234444444444444
No 320
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.88 E-value=4.1e-23 Score=236.32 Aligned_cols=210 Identities=22% Similarity=0.291 Sum_probs=170.7
Q ss_pred ccccCCCCCCCCc-----eeece-eecCCCCcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCC
Q 003368 8 GVLNSWNDSHHFC-----DWEGI-TCSPRHRRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFR 81 (825)
Q Consensus 8 ~~~~~w~~~~~~C-----~~~g~-~c~~~~~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 81 (825)
..+.+|....++| .|.++ .|.. .+++.|+|++|++.+ +|..+. ++|++|+|++|+|+ .+| ..+++
T Consensus 31 ~~l~~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~ 101 (571)
T 3cvr_A 31 SAWDKWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPAS 101 (571)
T ss_dssp HHHHHHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTT
T ss_pred HHHHHHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCC
Confidence 3467797777888 79999 7864 479999999999987 777664 88999999999999 677 45799
Q ss_pred CCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEccc
Q 003368 82 LEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAY 161 (825)
Q Consensus 82 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 161 (825)
|++|+|++|+|++ +|. |.. +|++|+|++|+|++ +|. .+++|+.|+|++|+|++ +|. .+++|++|+|++
T Consensus 102 L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~ 169 (571)
T 3cvr_A 102 LEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRN 169 (571)
T ss_dssp CCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred CCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCC
Confidence 9999999999997 666 665 99999999999997 565 68999999999999996 565 578999999999
Q ss_pred CcCcccCCcccccccccceecCcCcCCccccCCCCCceeecCCccccccCCchhhhcCCCC-------cEEEcccccCCC
Q 003368 162 NSLGGNIPSSLGQLKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLPPSLGLTLSNL-------QLFQISNNFFSG 234 (825)
Q Consensus 162 N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L-------~~L~Ls~N~l~~ 234 (825)
|+|++ +|. |. ++|+.| +|++|+|+ .+|. +. . +| +.|+|++|+|+.
T Consensus 170 N~L~~-lp~-l~--~~L~~L-------------------~Ls~N~L~-~lp~-~~-~--~L~~~~~~L~~L~Ls~N~l~~ 221 (571)
T 3cvr_A 170 NQLTF-LPE-LP--ESLEAL-------------------DVSTNLLE-SLPA-VP-V--RNHHSEETEIFFRCRENRITH 221 (571)
T ss_dssp SCCSC-CCC-CC--TTCCEE-------------------ECCSSCCS-SCCC-CC-----------CCEEEECCSSCCCC
T ss_pred CCCCC-cch-hh--CCCCEE-------------------ECcCCCCC-chhh-HH-H--hhhcccccceEEecCCCccee
Confidence 99986 665 55 666666 77788887 6776 43 2 56 999999999984
Q ss_pred CCCccccCCCCccEEEeecccccCccccCcCCC
Q 003368 235 SFPLAFSNASNLQSLEILGNNFFGKLSVNFGDM 267 (825)
Q Consensus 235 ~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 267 (825)
+|..+.++++|+.|+|++|++.+.+|..+..+
T Consensus 222 -lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 222 -IPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp -CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred -cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 67777779999999999999988776655443
No 321
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=99.88 E-value=1.2e-22 Score=224.57 Aligned_cols=154 Identities=25% Similarity=0.325 Sum_probs=122.1
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeeccccccc-CCCCeee
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDF-QGNDFKA 721 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~-~~~~~~~ 721 (825)
..|...++||+|+||+||+|++..++ .||||++..... ...+|+++++.++|||||++++++..... .+..+.+
T Consensus 40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~-~~aikk~~~~~~----~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~ 114 (394)
T 4e7w_A 40 IAYTNCKVIGNGSFGVVFQAKLVESD-EVAIKKVLQDKR----FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLN 114 (394)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTE-EEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEE
T ss_pred ceEEEeEEEeeCCCeEEEEEEECCCC-eEEEEEEecCcc----hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEE
Confidence 45888999999999999999996554 589998864322 22379999999999999999998754221 2334578
Q ss_pred EEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeec-CCCcEE
Q 003368 722 LVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLD-NNLTAH 800 (825)
Q Consensus 722 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~-~~~~~k 800 (825)
+||||++++.+....+. ......+++..+..++.|+++||+|||+. +|+||||||+|||++ .++.+|
T Consensus 115 lv~e~~~~~l~~~~~~~---------~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~k 182 (394)
T 4e7w_A 115 LVLEYVPETVYRASRHY---------AKLKQTMPMLLIKLYMYQLLRSLAYIHSI---GICHRDIKPQNLLLDPPSGVLK 182 (394)
T ss_dssp EEEECCSEEHHHHHHHH---------HHTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEE
T ss_pred EEeeccCccHHHHHHHH---------HhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEcCCCCcEE
Confidence 99999987544333210 11234689999999999999999999986 999999999999999 799999
Q ss_pred EcccCcccccccC
Q 003368 801 VGDFGLARLRQEV 813 (825)
Q Consensus 801 i~DFGla~~~~~~ 813 (825)
|+|||+|+.....
T Consensus 183 L~DFG~a~~~~~~ 195 (394)
T 4e7w_A 183 LIDFGSAKILIAG 195 (394)
T ss_dssp ECCCTTCEECCTT
T ss_pred EeeCCCcccccCC
Confidence 9999999987544
No 322
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=99.88 E-value=1.6e-22 Score=221.24 Aligned_cols=167 Identities=22% Similarity=0.284 Sum_probs=121.1
Q ss_pred HHHHhhcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeeccccccc-
Q 003368 636 ESLLKATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDF- 714 (825)
Q Consensus 636 ~~~~~~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~- 714 (825)
.+.....++|...+.||+|+||.||+|++..+|+.||||++..... ..+.+.+|++.++.++|||||++++++.....
T Consensus 16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~ 94 (360)
T 3e3p_A 16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPR-FRNRELQIMQDLAVLHHPNIVQLQSYFYTLGER 94 (360)
T ss_dssp HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTT-CCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSS
T ss_pred hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCcc-ccHHHHHHHHHHHhcCCCCcccHHHhhhccccc
Confidence 3445567889999999999999999999988999999999865432 23456788888999999999999999754221
Q ss_pred -CCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeee
Q 003368 715 -QGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILL 793 (825)
Q Consensus 715 -~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl 793 (825)
....+.++||||+++ ++.+.+... ......+++..+..++.|++.|++|||.+ ..+|+||||||+|||+
T Consensus 95 ~~~~~~~~lv~e~~~~-~l~~~~~~~--------~~~~~~~~~~~~~~~~~qi~~al~~lH~~-~~~ivH~Dlkp~NIll 164 (360)
T 3e3p_A 95 DRRDIYLNVVMEYVPD-TLHRCCRNY--------YRRQVAPPPILIKVFLFQLIRSIGCLHLP-SVNVCHRDIKPHNVLV 164 (360)
T ss_dssp CTTCEEEEEEEECCSC-BHHHHHHHH--------HTTTCCCCHHHHHHHHHHHHHHHHHHTST-TTCCBCSCCCGGGEEE
T ss_pred cccceeEEEEeecccc-cHHHHHHHH--------hhcccCCCHHHHHHHHHHHHHHHHHHhCC-CCCeecCcCCHHHEEE
Confidence 122347899999986 444443210 11234678889999999999999999932 2499999999999999
Q ss_pred cC-CCcEEEcccCcccccccC
Q 003368 794 DN-NLTAHVGDFGLARLRQEV 813 (825)
Q Consensus 794 ~~-~~~~ki~DFGla~~~~~~ 813 (825)
+. ++.+||+|||+|+.....
T Consensus 165 ~~~~~~~kl~Dfg~a~~~~~~ 185 (360)
T 3e3p_A 165 NEADGTLKLCDFGSAKKLSPS 185 (360)
T ss_dssp ETTTTEEEECCCTTCBCCCTT
T ss_pred eCCCCcEEEeeCCCceecCCC
Confidence 96 899999999999987654
No 323
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=99.88 E-value=3.1e-22 Score=211.45 Aligned_cols=152 Identities=25% Similarity=0.378 Sum_probs=132.1
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc--hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCe
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ--GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDF 719 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~--~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~ 719 (825)
.++|...+.||+|+||.||+|+...+++.||||++..... ...+.+.+|++++++++||||+++++++. ....
T Consensus 21 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~ 95 (287)
T 2wei_A 21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILE-----DSSS 95 (287)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSSE
T ss_pred hhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEe-----CCCe
Confidence 3568899999999999999999988999999999975432 34578999999999999999999999853 3567
Q ss_pred eeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCC---
Q 003368 720 KALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNN--- 796 (825)
Q Consensus 720 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~--- 796 (825)
.++||||+++++|.+++.. ...+++.++..++.|+++||+|||+. +|+||||||+||+++.+
T Consensus 96 ~~lv~e~~~~~~L~~~l~~------------~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIlv~~~~~~ 160 (287)
T 2wei_A 96 FYIVGELYTGGELFDEIIK------------RKRFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKD 160 (287)
T ss_dssp EEEEECCCCSCBHHHHHHH------------HSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTT
T ss_pred EEEEEEccCCCCHHHHHHh------------cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChhhEEEecCCCc
Confidence 8999999999999988742 24689999999999999999999986 99999999999999754
Q ss_pred CcEEEcccCcccccccC
Q 003368 797 LTAHVGDFGLARLRQEV 813 (825)
Q Consensus 797 ~~~ki~DFGla~~~~~~ 813 (825)
+.+||+|||+++.....
T Consensus 161 ~~~kL~Dfg~~~~~~~~ 177 (287)
T 2wei_A 161 CDIKIIDFGLSTCFQQN 177 (287)
T ss_dssp CCEEECSTTGGGTBCCC
T ss_pred ccEEEeccCcceeecCC
Confidence 47999999999876543
No 324
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=99.88 E-value=1.5e-22 Score=218.17 Aligned_cols=159 Identities=28% Similarity=0.446 Sum_probs=130.7
Q ss_pred hhcccccccceeccCCeeEEEEEEEc-CCCeEEEEEEeecccc--hhHHHHHHHHHHhhcC---CCCCceeEeecccccc
Q 003368 640 KATDGFSSTHLIGIGSFGSVYKGTFD-RDGTIVAIKVLNLQLQ--GASKSFAAECRALRNI---RHRNLVRVITSCSSID 713 (825)
Q Consensus 640 ~~~~~f~~~~~ig~G~~g~Vy~~~~~-~~g~~vAvK~~~~~~~--~~~~~~~~E~~~l~~l---~H~niv~l~~~~~~~~ 713 (825)
++.++|...+.||+|+||.||+|+.. .+|+.||||++..... .....+.+|+++++.+ +||||++++++|....
T Consensus 8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~ 87 (326)
T 1blx_A 8 RADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSR 87 (326)
T ss_dssp CGGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEE
T ss_pred CchhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecc
Confidence 45578999999999999999999984 6789999999975432 1233566788777766 8999999999875322
Q ss_pred cCCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeee
Q 003368 714 FQGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILL 793 (825)
Q Consensus 714 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl 793 (825)
.......++||||++ |+|.+++... ....+++.++..++.|+++||+|||+. +|+||||||+||++
T Consensus 88 ~~~~~~~~lv~e~~~-~~L~~~l~~~----------~~~~~~~~~~~~~~~qi~~~l~~lH~~---gi~H~dlkp~Nili 153 (326)
T 1blx_A 88 TDRETKLTLVFEHVD-QDLTTYLDKV----------PEPGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILV 153 (326)
T ss_dssp CSSEEEEEEEEECCS-CBHHHHHHHS----------CTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEE
T ss_pred cCCCceEEEEEecCC-CCHHHHHHhc----------ccCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHHHeEE
Confidence 234567899999998 6999998532 123488999999999999999999986 99999999999999
Q ss_pred cCCCcEEEcccCccccccc
Q 003368 794 DNNLTAHVGDFGLARLRQE 812 (825)
Q Consensus 794 ~~~~~~ki~DFGla~~~~~ 812 (825)
+.++.+||+|||+++....
T Consensus 154 ~~~~~~kl~Dfg~~~~~~~ 172 (326)
T 1blx_A 154 TSSGQIKLADFGLARIYSF 172 (326)
T ss_dssp CTTCCEEECSCCSCCCCCG
T ss_pred cCCCCEEEecCcccccccC
Confidence 9999999999999987653
No 325
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=99.88 E-value=4.6e-23 Score=224.67 Aligned_cols=152 Identities=14% Similarity=0.185 Sum_probs=124.8
Q ss_pred ccccccceeccCCeeEEEEEEEcC--------CCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccc---
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDR--------DGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSS--- 711 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~--------~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~--- 711 (825)
++|...+.||+|+||.||+|+... .++.||||++... +.+.+|++++++++|||||++++....
T Consensus 42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~~ 116 (352)
T 2jii_A 42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTPL 116 (352)
T ss_dssp CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCTT
T ss_pred CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCCc
Confidence 579999999999999999999976 3889999998754 457899999999999999984332110
Q ss_pred --------cccCCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeee
Q 003368 712 --------IDFQGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIH 783 (825)
Q Consensus 712 --------~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivH 783 (825)
....++...++||||+ +|+|.+++... ....+++.++..|+.|+++||+|||+. +|+|
T Consensus 117 ~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~----------~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH 182 (352)
T 2jii_A 117 LAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVS----------PKHVLSERSVLQVACRLLDALEFLHEN---EYVH 182 (352)
T ss_dssp CSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHS----------GGGCCCHHHHHHHHHHHHHHHHHHHHT---TCBC
T ss_pred cCccchhhccccCCcEEEEEecCC-CcCHHHHHHhC----------CcCCCCHHHHHHHHHHHHHHHHHHHhC---CccC
Confidence 0012356789999999 99999999522 135799999999999999999999986 9999
Q ss_pred cCCCCCCeeecCCC--cEEEcccCcccccccC
Q 003368 784 CDLKPSNILLDNNL--TAHVGDFGLARLRQEV 813 (825)
Q Consensus 784 rdlk~~NILl~~~~--~~ki~DFGla~~~~~~ 813 (825)
|||||+||+++.++ .+||+|||+|+.....
T Consensus 183 ~Dikp~NIl~~~~~~~~~kl~Dfg~a~~~~~~ 214 (352)
T 2jii_A 183 GNVTAENIFVDPEDQSQVTLAGYGFAFRYCPS 214 (352)
T ss_dssp SCCCGGGEEEETTEEEEEEECCGGGCBCSSGG
T ss_pred CCCCHHHEEEcCCCCceEEEecCcceeeccCC
Confidence 99999999999998 9999999999877543
No 326
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=2.3e-24 Score=238.21 Aligned_cols=257 Identities=16% Similarity=0.193 Sum_probs=171.1
Q ss_pred CChhhhcccccceeecccccccccc----CccCCCCCCCCEEEcccC---cCcccCCcccccccccceecCcCcCCcccc
Q 003368 120 IPSEFVSLYNLKELAIQENNLTGGI----PHFLGNITSLEAISLAYN---SLGGNIPSSLGQLKELKSLGLGGTIPPSIY 192 (825)
Q Consensus 120 ~p~~~~~l~~L~~L~L~~N~l~~~~----p~~~~~l~~L~~L~Ls~N---~l~~~~p~~~~~l~~L~~L~L~~~~p~~i~ 192 (825)
++..+..+++|++|+|++|++++.. +..|..+++|++|+|++| ++++.+|..+..+. ..+.
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~------------~~l~ 91 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL------------QALL 91 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHH------------HHHT
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHH------------HHHh
Confidence 4455555555666666666555432 223555666666666654 33334444332110 1222
Q ss_pred CCCCCceeecCCccccc----cCCchhhhcCCCCcEEEcccccCCCCCCccc----cCC---------CCccEEEeeccc
Q 003368 193 NLSLLANFSVPENRLHG----SLPPSLGLTLSNLQLFQISNNFFSGSFPLAF----SNA---------SNLQSLEILGNN 255 (825)
Q Consensus 193 ~l~~l~~l~l~~N~l~~----~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~----~~l---------~~L~~L~L~~N~ 255 (825)
.++.|+.|+|++|.+++ .+|..+. .+++|++|+|++|.++...+..+ ..+ ++|++|+|++|+
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLS-KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHH-HCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHHH-hCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 23333333555566554 2444444 67777777777777754333333 333 899999999999
Q ss_pred ccC-ccccCcCCCCCCcEEEcccccCCCCCCCccccccccccCCCCCEEEcccccccccCCCCcccccCCccccCCCCcC
Q 003368 256 FFG-KLSVNFGDMKSLAYLNVAINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALPHSIVSGSIPSEIGKLVSLY 334 (825)
Q Consensus 256 l~~-~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l~~l~~L~ 334 (825)
+.. .++ .+...+..+++|+.|+|++|.++... +...+|..+..+++|+
T Consensus 171 l~~~~~~---------------------------~l~~~l~~~~~L~~L~L~~n~l~~~g----~~~l~~~~l~~~~~L~ 219 (386)
T 2ca6_A 171 LENGSMK---------------------------EWAKTFQSHRLLHTVKMVQNGIRPEG----IEHLLLEGLAYCQELK 219 (386)
T ss_dssp CTGGGHH---------------------------HHHHHHHHCTTCCEEECCSSCCCHHH----HHHHHHTTGGGCTTCC
T ss_pred CCcHHHH---------------------------HHHHHHHhCCCcCEEECcCCCCCHhH----HHHHHHHHhhcCCCcc
Confidence 862 221 11235667788999999999886200 0001333778899999
Q ss_pred EEEcccCccc----ccCCccccCCCCCCEEEccccccccc----cCccc--cCCCCCcEEEcccCcccc----ccCCCC-
Q 003368 335 LIEMDHNQFE----GKIPEEMSRLQNLQFLNMRHNQLSGE----IPSSF--GNLSSLVKLILGNNNLSG----VIPSSL- 399 (825)
Q Consensus 335 ~L~L~~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~--~~l~~L~~L~Ls~N~l~~----~~p~~~- 399 (825)
.|+|++|.++ +.+|..+..+++|++|+|++|++.+. +|..+ +.+++|++|+|++|.+++ .+|..+
T Consensus 220 ~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~ 299 (386)
T 2ca6_A 220 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID 299 (386)
T ss_dssp EEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH
T ss_pred EEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH
Confidence 9999999996 67888999999999999999999866 56766 448999999999999998 477776
Q ss_pred CCCCccceeecCCCCCccccc
Q 003368 400 GNLKQLALLHLFQNDLSGAIP 420 (825)
Q Consensus 400 ~~l~~L~~L~L~~N~l~g~ip 420 (825)
.++++|+.|++++|.+++..|
T Consensus 300 ~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 300 EKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHCTTCCEEECTTSBSCTTSH
T ss_pred hcCCCceEEEccCCcCCcchh
Confidence 668999999999999997664
No 327
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=99.87 E-value=7.5e-23 Score=219.02 Aligned_cols=153 Identities=25% Similarity=0.298 Sum_probs=125.8
Q ss_pred hcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccch------hHHHHHHHHHHhhcC----CCCCceeEeeccc
Q 003368 641 ATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQG------ASKSFAAECRALRNI----RHRNLVRVITSCS 710 (825)
Q Consensus 641 ~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~------~~~~~~~E~~~l~~l----~H~niv~l~~~~~ 710 (825)
-.++|...+.||+|+||.||+|+...+|+.||||++...... ....+.+|++++.++ +||||+++++++.
T Consensus 29 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~~ 108 (312)
T 2iwi_A 29 FEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWFE 108 (312)
T ss_dssp ----CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC-
T ss_pred hhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEEe
Confidence 346799999999999999999999889999999999754321 223456799999888 8999999999853
Q ss_pred ccccCCCCeeeEEEEc-cCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCC
Q 003368 711 SIDFQGNDFKALVYQY-MPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPS 789 (825)
Q Consensus 711 ~~~~~~~~~~~lv~e~-~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~ 789 (825)
..+..++|||| +++++|.+++.. ...+++..+..++.|+++||+|||+. +|+||||||+
T Consensus 109 -----~~~~~~~v~e~~~~~~~L~~~l~~------------~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~ 168 (312)
T 2iwi_A 109 -----TQEGFMLVLERPLPAQDLFDYITE------------KGPLGEGPSRCFFGQVVAAIQHCHSR---GVVHRDIKDE 168 (312)
T ss_dssp ---------CEEEEECCSSEEEHHHHHHH------------HCSCCHHHHHHHHHHHHHHHHHHHHH---TEECCCCSGG
T ss_pred -----cCCeEEEEEEecCCCCCHHHHHHh------------cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChh
Confidence 35678999999 799999999842 24689999999999999999999986 8999999999
Q ss_pred Ceeec-CCCcEEEcccCcccccccC
Q 003368 790 NILLD-NNLTAHVGDFGLARLRQEV 813 (825)
Q Consensus 790 NILl~-~~~~~ki~DFGla~~~~~~ 813 (825)
||+++ .++.+||+|||+++.....
T Consensus 169 Nil~~~~~~~~kl~dfg~~~~~~~~ 193 (312)
T 2iwi_A 169 NILIDLRRGCAKLIDFGSGALLHDE 193 (312)
T ss_dssp GEEEETTTTEEEECCCSSCEECCSS
T ss_pred hEEEeCCCCeEEEEEcchhhhcccC
Confidence 99999 8899999999999987543
No 328
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=99.87 E-value=2.5e-22 Score=226.52 Aligned_cols=152 Identities=26% Similarity=0.399 Sum_probs=127.3
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCeee
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFKA 721 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~~ 721 (825)
.++|...+.||+|+||.||+|++..+|+.||||++..... .+++.+|+++++.++|++.+..+.++. ...+..+
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~il~~L~~~~~i~~i~~~~----~~~~~~~ 79 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK--HPQLLYESKIYRILQGGTGIPNVRWFG----VEGDYNV 79 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS--SCCHHHHHHHHHHTTTSTTCCCEEEEE----EETTEEE
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc--cHHHHHHHHHHHHhcCCCCCCeEEEEE----eeCCEEE
Confidence 3679999999999999999999988999999998875432 245789999999999755554444332 2356789
Q ss_pred EEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeee---cCCCc
Q 003368 722 LVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILL---DNNLT 798 (825)
Q Consensus 722 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl---~~~~~ 798 (825)
+||||+ +|+|.+++... ...++|.++..|+.||+.||+|||+. +||||||||+|||+ +.++.
T Consensus 80 lvme~~-g~sL~~ll~~~-----------~~~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDIKP~NILl~~~~~~~~ 144 (483)
T 3sv0_A 80 LVMDLL-GPSLEDLFNFC-----------SRKLSLKTVLMLADQMINRVEFVHSK---SFLHRDIKPDNFLMGLGRRANQ 144 (483)
T ss_dssp EEEECC-CCBHHHHHHHT-----------TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTTC
T ss_pred EEEECC-CCCHHHHHHhh-----------cCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCcceEEEecCCCCCe
Confidence 999999 99999998521 24689999999999999999999986 99999999999999 68899
Q ss_pred EEEcccCcccccccCC
Q 003368 799 AHVGDFGLARLRQEVP 814 (825)
Q Consensus 799 ~ki~DFGla~~~~~~~ 814 (825)
+||+|||+|+......
T Consensus 145 vkL~DFGla~~~~~~~ 160 (483)
T 3sv0_A 145 VYIIDFGLAKKYRDTS 160 (483)
T ss_dssp EEECCCTTCEECBCTT
T ss_pred EEEEeCCcceeccCCc
Confidence 9999999999876543
No 329
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=6.6e-22 Score=210.93 Aligned_cols=172 Identities=23% Similarity=0.334 Sum_probs=105.8
Q ss_pred CCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccce
Q 003368 53 GNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKE 132 (825)
Q Consensus 53 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 132 (825)
..+++|++|++++|.++. +| .+..+++|++|+|++|++++..+ |..+++|++|+|++|++++. ..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 356677777777777763 44 56777777777777777775444 77777777777777777753 35777777777
Q ss_pred eeccccccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcCCccccCCCCCceeecCCccccccCC
Q 003368 133 LAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLP 212 (825)
Q Consensus 133 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp 212 (825)
|+|++|++++. + .+..+++|+.|+|++|++++..+ +..+++|+.| ++++|++++ ++
T Consensus 112 L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L-------------------~l~~n~l~~-~~ 167 (308)
T 1h6u_A 112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYL-------------------SIGNAQVSD-LT 167 (308)
T ss_dssp EECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEE-------------------ECCSSCCCC-CG
T ss_pred EECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEE-------------------EccCCcCCC-Ch
Confidence 77777777753 2 26777777777777777764332 4444444444 444454442 22
Q ss_pred chhhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccC
Q 003368 213 PSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFG 258 (825)
Q Consensus 213 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 258 (825)
. + ..+++|+.|+|++|++++..+ +..+++|+.|+|++|++.+
T Consensus 168 ~-l-~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~ 209 (308)
T 1h6u_A 168 P-L-ANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD 209 (308)
T ss_dssp G-G-TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCB
T ss_pred h-h-cCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCc
Confidence 2 2 245555555555555554332 4555555555555555543
No 330
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=99.87 E-value=3e-22 Score=235.02 Aligned_cols=152 Identities=25% Similarity=0.407 Sum_probs=130.2
Q ss_pred cccccccceeccCCeeEEEEEEEcC---CCeEEEEEEeecccc-hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDR---DGTIVAIKVLNLQLQ-GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGN 717 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~---~g~~vAvK~~~~~~~-~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 717 (825)
.++|...+.||+|+||.||+|++.. .+..||||.+..... ...+.|.+|+.++++++|||||+++++|. +
T Consensus 389 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~------~ 462 (656)
T 2j0j_A 389 RERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT------E 462 (656)
T ss_dssp GGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC------S
T ss_pred cccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe------c
Confidence 4568888999999999999999854 356899999875433 33568999999999999999999999863 3
Q ss_pred CeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCC
Q 003368 718 DFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNL 797 (825)
Q Consensus 718 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~ 797 (825)
+..++||||+++|+|.+++... ...+++..+..++.|+++||+|||+. +|+||||||+|||++.++
T Consensus 463 ~~~~lv~E~~~~g~L~~~l~~~-----------~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDikp~NILl~~~~ 528 (656)
T 2j0j_A 463 NPVWIIMELCTLGELRSFLQVR-----------KFSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSND 528 (656)
T ss_dssp SSCEEEEECCTTCBHHHHHHHT-----------TTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETT
T ss_pred CceEEEEEcCCCCcHHHHHHhc-----------cCCCCHHHHHHHHHHHHHHHHHHHhC---CccccccchHhEEEeCCC
Confidence 4579999999999999998522 23589999999999999999999986 999999999999999999
Q ss_pred cEEEcccCcccccccC
Q 003368 798 TAHVGDFGLARLRQEV 813 (825)
Q Consensus 798 ~~ki~DFGla~~~~~~ 813 (825)
.+||+|||+|+.....
T Consensus 529 ~vkL~DFG~a~~~~~~ 544 (656)
T 2j0j_A 529 CVKLGDFGLSRYMEDS 544 (656)
T ss_dssp EEEECCCCCCCSCCC-
T ss_pred CEEEEecCCCeecCCC
Confidence 9999999999987554
No 331
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=99.87 E-value=2.3e-22 Score=212.89 Aligned_cols=152 Identities=31% Similarity=0.450 Sum_probs=122.1
Q ss_pred cccccccceeccCCeeEEEEEEEcC-CC--eEEEEEEeeccc---chhHHHHHHHHHHhhcCCCCCceeEeecccccccC
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDR-DG--TIVAIKVLNLQL---QGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQ 715 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~-~g--~~vAvK~~~~~~---~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~ 715 (825)
.++|+..+.||+|+||.||+|++.. ++ ..||||+++... ....+.+.+|++++++++||||+++++++..
T Consensus 17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~---- 92 (291)
T 1u46_A 17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT---- 92 (291)
T ss_dssp GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS----
T ss_pred hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcc----
Confidence 3568899999999999999998643 33 369999987542 2345789999999999999999999998642
Q ss_pred CCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecC
Q 003368 716 GNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDN 795 (825)
Q Consensus 716 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~ 795 (825)
...++||||+++|+|.+++.. ....+++.++..++.|+++||+|||+. +|+||||||+||+++.
T Consensus 93 --~~~~~v~e~~~~~~L~~~l~~-----------~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nili~~ 156 (291)
T 1u46_A 93 --PPMKMVTELAPLGSLLDRLRK-----------HQGHFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLAT 156 (291)
T ss_dssp --SSCEEEEECCTTCBHHHHHHH-----------HGGGSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEE
T ss_pred --CCceeeEecccCCCHHHHHHh-----------ccCCcCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEEcC
Confidence 237899999999999999842 224689999999999999999999986 9999999999999999
Q ss_pred CCcEEEcccCcccccccC
Q 003368 796 NLTAHVGDFGLARLRQEV 813 (825)
Q Consensus 796 ~~~~ki~DFGla~~~~~~ 813 (825)
++.+||+|||+++.....
T Consensus 157 ~~~~kl~Dfg~~~~~~~~ 174 (291)
T 1u46_A 157 RDLVKIGDFGLMRALPQN 174 (291)
T ss_dssp TTEEEECCCTTCEECCC-
T ss_pred CCCEEEcccccccccccc
Confidence 999999999999887544
No 332
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.87 E-value=2.8e-22 Score=222.84 Aligned_cols=156 Identities=26% Similarity=0.354 Sum_probs=116.5
Q ss_pred ccc-cceeccCCeeEEEEEEEc--CCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCeee
Q 003368 645 FSS-THLIGIGSFGSVYKGTFD--RDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFKA 721 (825)
Q Consensus 645 f~~-~~~ig~G~~g~Vy~~~~~--~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~~ 721 (825)
|.. .++||+|+||.||+|+++ .+++.||||++.... ..+.+.+|++++++++|||||++++++.. ......+
T Consensus 22 y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~E~~~l~~l~hpniv~~~~~~~~---~~~~~~~ 96 (405)
T 3rgf_A 22 FEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLS---HADRKVW 96 (405)
T ss_dssp EECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSS--CCHHHHHHHHHHHHCCCTTBCCCCEEEEE---TTTTEEE
T ss_pred hhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCC--CCHHHHHHHHHHHhcCCCCeeeEeeEEec---CCCCeEE
Confidence 544 568999999999999975 468899999997542 23578899999999999999999998643 3356789
Q ss_pred EEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeee----cCCC
Q 003368 722 LVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILL----DNNL 797 (825)
Q Consensus 722 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl----~~~~ 797 (825)
+||||++ |+|.+++...... ........+++..+..|+.|++.||+|||+. +|+||||||+|||+ +.++
T Consensus 97 lv~e~~~-~~l~~~~~~~~~~---~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~Dlkp~NIll~~~~~~~~ 169 (405)
T 3rgf_A 97 LLFDYAE-HDLWHIIKFHRAS---KANKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERG 169 (405)
T ss_dssp EEEECCS-EEHHHHHHHHHHH---C-------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECCSSTTTT
T ss_pred EEEeCCC-CCHHHHHHHhccc---cccccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeCCCcCHHHeEEecCCCCCC
Confidence 9999997 5888877421000 0001123589999999999999999999986 89999999999999 7788
Q ss_pred cEEEcccCccccccc
Q 003368 798 TAHVGDFGLARLRQE 812 (825)
Q Consensus 798 ~~ki~DFGla~~~~~ 812 (825)
.+||+|||+|+....
T Consensus 170 ~~kl~Dfg~a~~~~~ 184 (405)
T 3rgf_A 170 RVKIADMGFARLFNS 184 (405)
T ss_dssp CEEECCTTCCC----
T ss_pred cEEEEECCCceecCC
Confidence 999999999998754
No 333
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=99.87 E-value=2.1e-22 Score=216.32 Aligned_cols=152 Identities=25% Similarity=0.302 Sum_probs=130.6
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccch------hHHHHHHHHHHhhcCC--CCCceeEeecccccc
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQG------ASKSFAAECRALRNIR--HRNLVRVITSCSSID 713 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~------~~~~~~~E~~~l~~l~--H~niv~l~~~~~~~~ 713 (825)
.++|...+.||+|+||.||+|+...+|+.||||++...... ..+.+.+|++++++++ ||||+++++++.
T Consensus 42 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~--- 118 (320)
T 3a99_A 42 ESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFE--- 118 (320)
T ss_dssp TTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEE---
T ss_pred cCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEe---
Confidence 46689999999999999999999899999999999754321 2245678999999996 599999999853
Q ss_pred cCCCCeeeEEEEccCC-CChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCee
Q 003368 714 FQGNDFKALVYQYMPN-GSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNIL 792 (825)
Q Consensus 714 ~~~~~~~~lv~e~~~~-gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NIL 792 (825)
.++..++||||+.+ ++|.+++.. ...+++..+..++.|+++||+|||+. +|+||||||+||+
T Consensus 119 --~~~~~~lv~e~~~~~~~L~~~l~~------------~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIl 181 (320)
T 3a99_A 119 --RPDSFVLILERPEPVQDLFDFITE------------RGALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDENIL 181 (320)
T ss_dssp --CSSEEEEEEECCSSEEEHHHHHHH------------HCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEE
T ss_pred --cCCcEEEEEEcCCCCccHHHHHhc------------cCCCCHHHHHHHHHHHHHHHHHHHHC---CcEeCCCCHHHEE
Confidence 46678999999986 899999842 24689999999999999999999985 9999999999999
Q ss_pred ec-CCCcEEEcccCcccccccC
Q 003368 793 LD-NNLTAHVGDFGLARLRQEV 813 (825)
Q Consensus 793 l~-~~~~~ki~DFGla~~~~~~ 813 (825)
++ +++.+||+|||+++.....
T Consensus 182 l~~~~~~~kL~Dfg~~~~~~~~ 203 (320)
T 3a99_A 182 IDLNRGELKLIDFGSGALLKDT 203 (320)
T ss_dssp EETTTTEEEECCCTTCEECCSS
T ss_pred EeCCCCCEEEeeCccccccccc
Confidence 99 7899999999999987543
No 334
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=99.87 E-value=3.4e-22 Score=221.54 Aligned_cols=140 Identities=25% Similarity=0.399 Sum_probs=115.2
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCC--------CCCceeEeeccccccc
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIR--------HRNLVRVITSCSSIDF 714 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~--------H~niv~l~~~~~~~~~ 714 (825)
++|...+.||+|+||+||+|+...+|+.||||++... ....+.+.+|++++++++ ||||+++++++... .
T Consensus 37 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~-~ 114 (397)
T 1wak_A 37 GRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKIS-G 114 (397)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEE-E
T ss_pred CeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeec-C
Confidence 5689999999999999999999899999999999754 334567889999999986 78899999986421 1
Q ss_pred CCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeec
Q 003368 715 QGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLD 794 (825)
Q Consensus 715 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~ 794 (825)
......++||||+ +|++.+++... ....+++..+..|+.|+++||+|||+.+ +|+||||||+|||++
T Consensus 115 ~~~~~~~lv~e~~-~~~l~~~~~~~----------~~~~~~~~~~~~i~~qi~~aL~~lH~~~--givHrDikp~NIll~ 181 (397)
T 1wak_A 115 VNGTHICMVFEVL-GHHLLKWIIKS----------NYQGLPLPCVKKIIQQVLQGLDYLHTKC--RIIHTDIKPENILLS 181 (397)
T ss_dssp TTEEEEEEEECCC-CCBHHHHHHHT----------TTSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECCCCSGGGEEEC
T ss_pred CCCceEEEEEecc-CccHHHHHHhc----------ccCCCCHHHHHHHHHHHHHHHHHHHHhC--CEecCCCCHHHeeEe
Confidence 1345789999999 66777666321 1245899999999999999999999842 899999999999999
Q ss_pred CCC
Q 003368 795 NNL 797 (825)
Q Consensus 795 ~~~ 797 (825)
.++
T Consensus 182 ~~~ 184 (397)
T 1wak_A 182 VNE 184 (397)
T ss_dssp CCH
T ss_pred ccc
Confidence 775
No 335
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.4e-21 Score=208.46 Aligned_cols=192 Identities=24% Similarity=0.362 Sum_probs=164.6
Q ss_pred CcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEc
Q 003368 32 RRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYL 111 (825)
Q Consensus 32 ~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 111 (825)
.+++.|+++++++.. +| .+..+++|++|+|++|++++..+ |..+++|++|+|++|+|++. ..|..+++|++|+|
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEEC
Confidence 579999999999875 44 68999999999999999996544 99999999999999999964 36999999999999
Q ss_pred CCCCCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcCCccc
Q 003368 112 GRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSI 191 (825)
Q Consensus 112 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i 191 (825)
++|++++. + .+..+++|++|++++|++++..+ +..+++|+.|+|++|++++..+ +..+++|+.|
T Consensus 115 ~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L---------- 178 (308)
T 1h6u_A 115 TSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTL---------- 178 (308)
T ss_dssp TTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEE----------
T ss_pred CCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEE----------
Confidence 99999964 4 39999999999999999997654 8999999999999999986443 7777777776
Q ss_pred cCCCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccCc
Q 003368 192 YNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGK 259 (825)
Q Consensus 192 ~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 259 (825)
++++|++++ ++. + ..+++|+.|+|++|++++..| +..+++|+.|+|++|++.+.
T Consensus 179 ---------~l~~n~l~~-~~~-l-~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 179 ---------KADDNKISD-ISP-L-ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp ---------ECCSSCCCC-CGG-G-GGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred ---------ECCCCccCc-Chh-h-cCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence 777888874 443 3 489999999999999997653 88999999999999998763
No 336
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=99.87 E-value=1.6e-22 Score=233.10 Aligned_cols=159 Identities=26% Similarity=0.398 Sum_probs=132.2
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc-chhHHHHHHHHHHhhcCCCCCceeEeecccccc-cCCCCee
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL-QGASKSFAAECRALRNIRHRNLVRVITSCSSID-FQGNDFK 720 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~-~~~~~~~ 720 (825)
++|...+.||+|+||.||+|.+..+|+.||||++.... ....+.+.+|++++++++|||||++++++.... +...+..
T Consensus 14 grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~~ 93 (676)
T 3qa8_A 14 GPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLP 93 (676)
T ss_dssp ---CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSSC
T ss_pred CCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCeE
Confidence 57999999999999999999998899999999987643 334567999999999999999999999864311 2235678
Q ss_pred eEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc--
Q 003368 721 ALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT-- 798 (825)
Q Consensus 721 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~-- 798 (825)
++||||+++|+|.+++... .....+++..+..|+.|++.||+|||+. +|+||||||+||+++.++.
T Consensus 94 ~LVmEy~~ggsL~~~L~~~---------~~~~~lse~~i~~I~~QLl~aL~yLHs~---gIVHrDLKP~NILl~~~g~~~ 161 (676)
T 3qa8_A 94 LLAMEYCEGGDLRKYLNQF---------ENCCGLKEGPIRTLLSDISSALRYLHEN---RIIHRDLKPENIVLQPGPQRL 161 (676)
T ss_dssp CCEEECCSSCBHHHHHHSS---------SCTTCCCSSHHHHHHHHHHHHHHHHHHT---TBCCCCCCSTTEEEECCSSSC
T ss_pred EEEEEeCCCCCHHHHHHhc---------ccCCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEeecCCCce
Confidence 9999999999999999643 1123578889999999999999999985 8999999999999997664
Q ss_pred -EEEcccCcccccccC
Q 003368 799 -AHVGDFGLARLRQEV 813 (825)
Q Consensus 799 -~ki~DFGla~~~~~~ 813 (825)
+||+|||+|+.....
T Consensus 162 ~vKL~DFG~a~~~~~~ 177 (676)
T 3qa8_A 162 IHKIIDLGYAKELDQG 177 (676)
T ss_dssp EEEECSCCCCCBTTSC
T ss_pred eEEEcccccccccccc
Confidence 999999999987554
No 337
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=99.87 E-value=5.1e-22 Score=214.94 Aligned_cols=150 Identities=23% Similarity=0.365 Sum_probs=127.5
Q ss_pred ccccccceeccCCeeEEEEEEE-cCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCC------ceeEeecccccccC
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTF-DRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRN------LVRVITSCSSIDFQ 715 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~-~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~n------iv~l~~~~~~~~~~ 715 (825)
++|+..+.||+|+||.||+|.. ..+|+.||||+++.. ....+.+.+|+++++.++|++ ++++++++.
T Consensus 14 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~----- 87 (339)
T 1z57_A 14 ARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV-DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFE----- 87 (339)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEE-----
T ss_pred CceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC-CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccc-----
Confidence 5789999999999999999998 568899999998754 234567889999999887765 899999853
Q ss_pred CCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecC
Q 003368 716 GNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDN 795 (825)
Q Consensus 716 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~ 795 (825)
..+..++||||+ +|+|.+++... ....+++.++..++.|+++||+|||+. +|+||||||+||+++.
T Consensus 88 ~~~~~~lv~e~~-~~~l~~~l~~~----------~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~ 153 (339)
T 1z57_A 88 HHGHICIVFELL-GLSTYDFIKEN----------GFLPFRLDHIRKMAYQICKSVNFLHSN---KLTHTDLKPENILFVQ 153 (339)
T ss_dssp ETTEEEEEEECC-CCBHHHHHHHT----------TTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESC
T ss_pred cCCcEEEEEcCC-CCCHHHHHHhc----------CCCCCcHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEec
Confidence 466889999999 89999998532 123588999999999999999999986 9999999999999987
Q ss_pred -------------------CCcEEEcccCccccccc
Q 003368 796 -------------------NLTAHVGDFGLARLRQE 812 (825)
Q Consensus 796 -------------------~~~~ki~DFGla~~~~~ 812 (825)
++.+||+|||+|+....
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~ 189 (339)
T 1z57_A 154 SDYTEAYNPKIKRDERTLINPDIKVVDFGSATYDDE 189 (339)
T ss_dssp CCEEEEEC----CEEEEESCCCEEECCCSSCEETTS
T ss_pred cccccccCCccccccccccCCCceEeeCcccccCcc
Confidence 66899999999987544
No 338
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=99.86 E-value=7.1e-22 Score=213.65 Aligned_cols=153 Identities=23% Similarity=0.379 Sum_probs=121.5
Q ss_pred ccccccc-ceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecccccccCCCCee
Q 003368 642 TDGFSST-HLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGNDFK 720 (825)
Q Consensus 642 ~~~f~~~-~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~~~ 720 (825)
.++|... ++||+|+||.||+|+...+|+.||||++.... +........++.++||||+++++++... ..+....
T Consensus 27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~e~~~~~~~~~h~~i~~~~~~~~~~-~~~~~~~ 101 (336)
T 3fhr_A 27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSP----KARQEVDHHWQASGGPHIVCILDVYENM-HHGKRCL 101 (336)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSH----HHHHHHHHHHHHTTSTTBCCEEEEEEEE-ETTEEEE
T ss_pred cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcH----HHHHHHHHHHHhcCCCChHHHHHHHhhc-cCCCceE
Confidence 4567774 57999999999999998899999999986532 1112223345667999999999986531 1224457
Q ss_pred eEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecC---CC
Q 003368 721 ALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDN---NL 797 (825)
Q Consensus 721 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~---~~ 797 (825)
++||||+++|+|.+++... ....+++.++..++.|+++||+|||+. +|+||||||+||+++. ++
T Consensus 102 ~lv~e~~~gg~L~~~l~~~----------~~~~l~~~~~~~i~~ql~~~l~~LH~~---~ivH~dlkp~NIll~~~~~~~ 168 (336)
T 3fhr_A 102 LIIMECMEGGELFSRIQER----------GDQAFTEREAAEIMRDIGTAIQFLHSH---NIAHRDVKPENLLYTSKEKDA 168 (336)
T ss_dssp EEEEECCTTEEHHHHHHTC-----------CCCCBHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTC
T ss_pred EEEEeccCCCCHHHHHHhc----------CCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEEecCCCc
Confidence 9999999999999999632 123689999999999999999999986 9999999999999976 45
Q ss_pred cEEEcccCccccccc
Q 003368 798 TAHVGDFGLARLRQE 812 (825)
Q Consensus 798 ~~ki~DFGla~~~~~ 812 (825)
.+||+|||+|+....
T Consensus 169 ~~kl~Dfg~~~~~~~ 183 (336)
T 3fhr_A 169 VLKLTDFGFAKETTQ 183 (336)
T ss_dssp CEEECCCTTCEEC--
T ss_pred eEEEeccccceeccc
Confidence 699999999987654
No 339
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=99.86 E-value=7.7e-22 Score=212.66 Aligned_cols=157 Identities=21% Similarity=0.255 Sum_probs=126.0
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc-hhHHHHHHHHH-HhhcCCCCCceeEeecccccccCCCCe
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ-GASKSFAAECR-ALRNIRHRNLVRVITSCSSIDFQGNDF 719 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~-~~~~~~~~E~~-~l~~l~H~niv~l~~~~~~~~~~~~~~ 719 (825)
.++|...+.||+|+||.||+|+...+|+.||||++..... ...+++.+|+. +++.++||||+++++++. ..+.
T Consensus 21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~-----~~~~ 95 (327)
T 3aln_A 21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALF-----REGD 95 (327)
T ss_dssp SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEE-----CSSE
T ss_pred HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEE-----eCCc
Confidence 3678889999999999999999988999999999976533 23445666666 778889999999999864 3567
Q ss_pred eeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcE
Q 003368 720 KALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTA 799 (825)
Q Consensus 720 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ 799 (825)
.++||||+++ +|.+++... .......+++..+..++.|+++||+|||+. .+|+||||||+||+++.++.+
T Consensus 96 ~~lv~e~~~~-~l~~~~~~~-------~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~--~~ivH~dlkp~NIll~~~~~~ 165 (327)
T 3aln_A 96 CWICMELMST-SFDKFYKYV-------YSVLDDVIPEEILGKITLATVKALNHLKEN--LKIIHRDIKPSNILLDRSGNI 165 (327)
T ss_dssp EEEEECCCSE-EHHHHHHHH-------HHTTCCCCCHHHHHHHHHHHHHHHHHHHHH--HSCCCSCCCGGGEEEETTTEE
T ss_pred eEEEEeecCC-ChHHHHHHH-------HhhhcccCcHHHHHHHHHHHHHHHHHHhcc--CCEeECCCCHHHEEEcCCCCE
Confidence 8999999985 787776321 001134688999999999999999999984 389999999999999999999
Q ss_pred EEcccCcccccccC
Q 003368 800 HVGDFGLARLRQEV 813 (825)
Q Consensus 800 ki~DFGla~~~~~~ 813 (825)
||+|||+++.....
T Consensus 166 kl~Dfg~~~~~~~~ 179 (327)
T 3aln_A 166 KLCDFGISGQLVDS 179 (327)
T ss_dssp EECCCSSSCC----
T ss_pred EEccCCCceecccc
Confidence 99999999876543
No 340
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=1e-21 Score=213.56 Aligned_cols=233 Identities=16% Similarity=0.121 Sum_probs=179.3
Q ss_pred ceeeceeecC-------C--CCcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCC-ccccCCCCCCE-EECC
Q 003368 20 CDWEGITCSP-------R--HRRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIP-GEIGRLFRLEA-LYLS 88 (825)
Q Consensus 20 C~~~g~~c~~-------~--~~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~Ls 88 (825)
|.|+.|.|.. . ..+++.|+|++|+|....+.+|.++++|++|+|++|++.+.+| .+|.++++|++ ++++
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 5666677753 2 2579999999999987667789999999999999999976555 57899998775 6778
Q ss_pred CCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeeccc-cccccccCccCCCCC-CCCEEEcccCcCcc
Q 003368 89 HNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQE-NNLTGGIPHFLGNIT-SLEAISLAYNSLGG 166 (825)
Q Consensus 89 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~ 166 (825)
+|+|+.+.|+.|..+++|++|++++|+|+...+..+....++..|++.+ |+++...+..|..+. .++.|+|++|+|+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 8999999999999999999999999999988888888888999999966 678877777888875 69999999999985
Q ss_pred cCCcccccccccceecCcCcCCccccCCCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCCCc
Q 003368 167 NIPSSLGQLKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNL 246 (825)
Q Consensus 167 ~~p~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 246 (825)
..+..| ...+|+.| ++++|+..+.+|...+..+++|++|+|++|+|+.+.+..|.+++
T Consensus 169 i~~~~f-~~~~L~~l-------------------~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~-- 226 (350)
T 4ay9_X 169 IHNSAF-NGTQLDEL-------------------NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK-- 226 (350)
T ss_dssp ECTTSS-TTEEEEEE-------------------ECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCC--
T ss_pred CChhhc-cccchhHH-------------------hhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccch--
Confidence 444444 45567666 66554444488888777899999999999999977666665555
Q ss_pred cEEEeecccccCccccCcCCCCCCcEEEcc
Q 003368 247 QSLEILGNNFFGKLSVNFGDMKSLAYLNVA 276 (825)
Q Consensus 247 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~ls 276 (825)
.|.+.+++-...+| .+..+++|+.++++
T Consensus 227 -~L~~l~~~~l~~lP-~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 227 -KLRARSTYNLKKLP-TLEKLVALMEASLT 254 (350)
T ss_dssp -EEECTTCTTCCCCC-CTTTCCSCCEEECS
T ss_pred -HhhhccCCCcCcCC-CchhCcChhhCcCC
Confidence 44444443333343 24445555555544
No 341
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=99.86 E-value=8e-22 Score=217.32 Aligned_cols=155 Identities=28% Similarity=0.367 Sum_probs=128.3
Q ss_pred hhcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCC-CC-----CceeEeecccccc
Q 003368 640 KATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIR-HR-----NLVRVITSCSSID 713 (825)
Q Consensus 640 ~~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~-H~-----niv~l~~~~~~~~ 713 (825)
...++|...+.||+|+||+||+|+...+|+.||||+++.. ....+++.+|+++++.++ |+ +|+++++++.
T Consensus 51 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~--- 126 (382)
T 2vx3_A 51 KWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK-KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFM--- 126 (382)
T ss_dssp EETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEE---
T ss_pred EeeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc-HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeec---
Confidence 3467899999999999999999999889999999999754 233466788898888875 44 4899988854
Q ss_pred cCCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeee
Q 003368 714 FQGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILL 793 (825)
Q Consensus 714 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl 793 (825)
..+..++||||++ |+|.+++... ....+++..+..++.|++.||+|||++ ..+||||||||+|||+
T Consensus 127 --~~~~~~lv~e~~~-~~L~~~l~~~----------~~~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll 192 (382)
T 2vx3_A 127 --FRNHLCLVFEMLS-YNLYDLLRNT----------NFRGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILL 192 (382)
T ss_dssp --ETTEEEEEEECCC-CBHHHHHHHT----------TTSCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEE
T ss_pred --cCCceEEEEecCC-CCHHHHHhhc----------CcCCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEE
Confidence 3568899999996 5999998532 123589999999999999999999963 3589999999999999
Q ss_pred c--CCCcEEEcccCccccccc
Q 003368 794 D--NNLTAHVGDFGLARLRQE 812 (825)
Q Consensus 794 ~--~~~~~ki~DFGla~~~~~ 812 (825)
+ .++.+||+|||+|+....
T Consensus 193 ~~~~~~~~kL~DFG~a~~~~~ 213 (382)
T 2vx3_A 193 CNPKRSAIKIVDFGSSCQLGQ 213 (382)
T ss_dssp SSTTSCCEEECCCTTCEETTC
T ss_pred ecCCCCcEEEEeccCceeccc
Confidence 4 578899999999987644
No 342
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=99.86 E-value=1.8e-21 Score=204.23 Aligned_cols=143 Identities=17% Similarity=0.141 Sum_probs=113.4
Q ss_pred HHHhhcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc------------------hhHHHHHHHHHHhhcCC
Q 003368 637 SLLKATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ------------------GASKSFAAECRALRNIR 698 (825)
Q Consensus 637 ~~~~~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~------------------~~~~~~~~E~~~l~~l~ 698 (825)
.+......|...+.||+|+||.||+|++ .+|+.||||.++.... .....+.+|++++++++
T Consensus 84 ~~~~~~~~~~~~~~iG~G~~g~Vy~~~~-~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~ 162 (282)
T 1zar_A 84 RLVRSGKVDAIGKLMGEGKESAVFNCYS-EKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ 162 (282)
T ss_dssp HHHHTTSCSEEEEEEEECSSEEEEEEEE-TTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhCCeEEEecCEeccCCCceEEEEEe-CCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc
Confidence 3444445566779999999999999999 8899999999964321 13457899999999999
Q ss_pred CCCceeEeecccccccCCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCC
Q 003368 699 HRNLVRVITSCSSIDFQGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQ 778 (825)
Q Consensus 699 H~niv~l~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~ 778 (825)
| +++.+++. .+..++||||+++|+|.+ +.. .+...++.|+++|++|||+.
T Consensus 163 ~---~~v~~~~~------~~~~~lvmE~~~g~~L~~-l~~------------------~~~~~i~~qi~~~l~~lH~~-- 212 (282)
T 1zar_A 163 G---LAVPKVYA------WEGNAVLMELIDAKELYR-VRV------------------ENPDEVLDMILEEVAKFYHR-- 212 (282)
T ss_dssp T---SSSCCEEE------EETTEEEEECCCCEEGGG-CCC------------------SCHHHHHHHHHHHHHHHHHT--
T ss_pred C---CCcCeEEe------ccceEEEEEecCCCcHHH-cch------------------hhHHHHHHHHHHHHHHHHHC--
Confidence 4 55554321 234699999999999988 421 12346999999999999985
Q ss_pred CCeeecCCCCCCeeecCCCcEEEcccCccccccc
Q 003368 779 EPTIHCDLKPSNILLDNNLTAHVGDFGLARLRQE 812 (825)
Q Consensus 779 ~~ivHrdlk~~NILl~~~~~~ki~DFGla~~~~~ 812 (825)
+|+||||||+|||++ ++.+||+|||+|+....
T Consensus 213 -giiHrDlkp~NILl~-~~~vkl~DFG~a~~~~~ 244 (282)
T 1zar_A 213 -GIVHGDLSQYNVLVS-EEGIWIIDFPQSVEVGE 244 (282)
T ss_dssp -TEECSCCSTTSEEEE-TTEEEECCCTTCEETTS
T ss_pred -CCEeCCCCHHHEEEE-CCcEEEEECCCCeECCC
Confidence 999999999999999 99999999999997643
No 343
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=99.86 E-value=5.7e-22 Score=212.27 Aligned_cols=159 Identities=25% Similarity=0.355 Sum_probs=129.6
Q ss_pred cccHHHHHhhcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeeccc--chhHHHHHHHHHHhhcCC--CCCceeEee
Q 003368 632 KVSYESLLKATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQL--QGASKSFAAECRALRNIR--HRNLVRVIT 707 (825)
Q Consensus 632 ~~~~~~~~~~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~--~~~~~~~~~E~~~l~~l~--H~niv~l~~ 707 (825)
.+.+..+....++|...+.||+|+||.||+|+. .+|+.||||++.... ....+.+.+|++++++++ ||||+++++
T Consensus 17 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~ 95 (313)
T 3cek_A 17 NLYFQSMSVKGRIYSILKQIGSGGSSKVFQVLN-EKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYD 95 (313)
T ss_dssp ---CCEEEETTEEEEEEEEEECCSSEEEEEEEC-TTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEE
T ss_pred CCCeeeeeeccceEEEEEEecCCCCEEEEEEEc-CCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEE
Confidence 344444444567799999999999999999998 568999999997543 234567899999999997 599999999
Q ss_pred cccccccCCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCC
Q 003368 708 SCSSIDFQGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLK 787 (825)
Q Consensus 708 ~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk 787 (825)
++. .++..++||| +.+|+|.+++.. ...+++.++..++.|+++||+|||+. +|+|||||
T Consensus 96 ~~~-----~~~~~~lv~e-~~~~~L~~~l~~------------~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlk 154 (313)
T 3cek_A 96 YEI-----TDQYIYMVME-CGNIDLNSWLKK------------KKSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLK 154 (313)
T ss_dssp EEE-----CSSEEEEEEC-CCSEEHHHHHHH------------CSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCC
T ss_pred Eee-----cCCEEEEEEe-cCCCcHHHHHHh------------cCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCC
Confidence 864 3567899999 668899999843 24688999999999999999999986 99999999
Q ss_pred CCCeeecCCCcEEEcccCcccccccC
Q 003368 788 PSNILLDNNLTAHVGDFGLARLRQEV 813 (825)
Q Consensus 788 ~~NILl~~~~~~ki~DFGla~~~~~~ 813 (825)
|+||++++ +.+||+|||+++.....
T Consensus 155 p~NIl~~~-~~~kL~Dfg~~~~~~~~ 179 (313)
T 3cek_A 155 PANFLIVD-GMLKLIDFGIANQMQPD 179 (313)
T ss_dssp GGGEEEET-TEEEECCCSSSCC----
T ss_pred cccEEEEC-CeEEEeeccccccccCc
Confidence 99999975 89999999999977543
No 344
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=99.85 E-value=2.1e-21 Score=208.19 Aligned_cols=153 Identities=20% Similarity=0.276 Sum_probs=115.3
Q ss_pred hcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccch-h-HHHHHHHHHHhhcCCCCCceeEeecccccccCCCC
Q 003368 641 ATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQG-A-SKSFAAECRALRNIRHRNLVRVITSCSSIDFQGND 718 (825)
Q Consensus 641 ~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~-~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~~ 718 (825)
..++|...+.||+|+||.||+|++..+|+.||||++...... . .+.+..+..+++.++||||+++++++. .++
T Consensus 23 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~-----~~~ 97 (318)
T 2dyl_A 23 EINDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFI-----TNT 97 (318)
T ss_dssp CGGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEE-----CSS
T ss_pred hhccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEe-----cCC
Confidence 346788899999999999999999889999999999765332 2 234445556788889999999999864 356
Q ss_pred eeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCc
Q 003368 719 FKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLT 798 (825)
Q Consensus 719 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~ 798 (825)
..++||||+ ++.+..+.. .....+++..+..++.|+++||+|||+. .+|+||||||+||+++.++.
T Consensus 98 ~~~lv~e~~-~~~~~~l~~-----------~~~~~~~~~~~~~~~~~i~~~l~~lH~~--~~i~H~dlkp~Nil~~~~~~ 163 (318)
T 2dyl_A 98 DVFIAMELM-GTCAEKLKK-----------RMQGPIPERILGKMTVAIVKALYYLKEK--HGVIHRDVKPSNILLDERGQ 163 (318)
T ss_dssp EEEEEECCC-SEEHHHHHH-----------HHTSCCCHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCGGGEEECTTSC
T ss_pred cEEEEEecc-CCcHHHHHH-----------HhccCCCHHHHHHHHHHHHHHHHHHHhh--CCEEeCCCCHHHEEECCCCC
Confidence 789999999 444444432 1234689999999999999999999972 18999999999999999999
Q ss_pred EEEcccCccccccc
Q 003368 799 AHVGDFGLARLRQE 812 (825)
Q Consensus 799 ~ki~DFGla~~~~~ 812 (825)
+||+|||+++....
T Consensus 164 ~kl~dfg~~~~~~~ 177 (318)
T 2dyl_A 164 IKLCDFGISGRLVD 177 (318)
T ss_dssp EEECCCTTC-----
T ss_pred EEEEECCCchhccC
Confidence 99999999987654
No 345
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=99.85 E-value=1.9e-21 Score=212.04 Aligned_cols=150 Identities=23% Similarity=0.368 Sum_probs=125.5
Q ss_pred ccccccceeccCCeeEEEEEEEcCCC-eEEEEEEeecccchhHHHHHHHHHHhhcCCCCC------ceeEeecccccccC
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDG-TIVAIKVLNLQLQGASKSFAAECRALRNIRHRN------LVRVITSCSSIDFQ 715 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g-~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~n------iv~l~~~~~~~~~~ 715 (825)
++|...+.||+|+||+||+|+...++ +.||||+++.. ....+.+.+|++++++++|++ ++.+++++ .
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~-----~ 92 (355)
T 2eu9_A 19 ERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV-GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWF-----N 92 (355)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEE-----E
T ss_pred ccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc-ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeee-----e
Confidence 57889999999999999999997666 79999999754 234567889999999998776 88888774 3
Q ss_pred CCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeee--
Q 003368 716 GNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILL-- 793 (825)
Q Consensus 716 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl-- 793 (825)
.....++||||+ +|++.+++... ....+++.++..|+.|+++||+|||+. +|+||||||+|||+
T Consensus 93 ~~~~~~lv~e~~-~~~l~~~l~~~----------~~~~~~~~~~~~i~~qi~~~L~~lH~~---~ivH~Dlkp~NIll~~ 158 (355)
T 2eu9_A 93 FHGHMCIAFELL-GKNTFEFLKEN----------NFQPYPLPHVRHMAYQLCHALRFLHEN---QLTHTDLKPENILFVN 158 (355)
T ss_dssp ETTEEEEEEECC-CCBHHHHHHHT----------TTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEESC
T ss_pred eCCeEEEEEecc-CCChHHHHHhc----------cCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEec
Confidence 356889999999 67777777422 123589999999999999999999985 99999999999999
Q ss_pred -----------------cCCCcEEEcccCccccccc
Q 003368 794 -----------------DNNLTAHVGDFGLARLRQE 812 (825)
Q Consensus 794 -----------------~~~~~~ki~DFGla~~~~~ 812 (825)
+.++.+||+|||+|+....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~ 194 (355)
T 2eu9_A 159 SEFETLYNEHKSCEEKSVKNTSIRVADFGSATFDHE 194 (355)
T ss_dssp CCEEEEECCC-CCCEEEESCCCEEECCCTTCEETTS
T ss_pred ccccccccccccccccccCCCcEEEeecCccccccc
Confidence 6678999999999987544
No 346
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.85 E-value=9.7e-21 Score=192.65 Aligned_cols=156 Identities=26% Similarity=0.312 Sum_probs=130.2
Q ss_pred ccCCCCCCCCceeeceeecCCCCcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCC
Q 003368 10 LNSWNDSHHFCDWEGITCSPRHRRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSH 89 (825)
Q Consensus 10 ~~~w~~~~~~C~~~g~~c~~~~~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 89 (825)
..-|..++..|+|.++.|... ++ +.+|..+. ++|++|+|++|+|++..|..|..+++|++|+|++
T Consensus 9 ~~~~~~~~~~Cs~~~v~c~~~------------~l-~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 73 (229)
T 3e6j_A 9 HSAACPSQCSCSGTTVDCRSK------------RH-ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGS 73 (229)
T ss_dssp --CCCCTTCEEETTEEECTTS------------CC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred hhccCCCCCEEeCCEeEccCC------------Cc-CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCC
Confidence 445666789999999999642 23 35555543 7899999999999988888999999999999999
Q ss_pred CcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccCC
Q 003368 90 NSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIP 169 (825)
Q Consensus 90 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 169 (825)
|+|+...+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|+ .+|..+..+++|++|+|++|+|++..+
T Consensus 74 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~ 152 (229)
T 3e6j_A 74 NQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH 152 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred CCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCH
Confidence 9998777788899999999999999999887788899999999999999998 678888899999999999999987777
Q ss_pred ccccccccccee
Q 003368 170 SSLGQLKELKSL 181 (825)
Q Consensus 170 ~~~~~l~~L~~L 181 (825)
..|..+++|+.|
T Consensus 153 ~~~~~l~~L~~L 164 (229)
T 3e6j_A 153 GAFDRLSSLTHA 164 (229)
T ss_dssp TTTTTCTTCCEE
T ss_pred HHHhCCCCCCEE
Confidence 778888877777
No 347
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=7.6e-21 Score=190.54 Aligned_cols=181 Identities=24% Similarity=0.274 Sum_probs=154.0
Q ss_pred CEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeecccc
Q 003368 59 REIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQEN 138 (825)
Q Consensus 59 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 138 (825)
+.++.+++.++ .+|..+ .++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 57889999998 566555 468999999999999888888999999999999999999887788999999999999999
Q ss_pred ccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcCCccccCCCCCceeecCCccccccCCchhhhc
Q 003368 139 NLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLPPSLGLT 218 (825)
Q Consensus 139 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~~~~~ 218 (825)
++++..+..|.++++|++|+|++|++++..+..|..+++|++| ++++|+++ .+|+..+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-------------------~l~~N~l~-~~~~~~~~~ 146 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDL-------------------RLYQNQLK-SVPDGVFDR 146 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-------------------ECCSSCCS-CCCTTTTTT
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEE-------------------ECCCCccc-eeCHHHhcc
Confidence 9998888889999999999999999997777777777777777 77788887 455555557
Q ss_pred CCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccCccccCcCCCCC
Q 003368 219 LSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGKLSVNFGDMKS 269 (825)
Q Consensus 219 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 269 (825)
+++|+.|+|++|.+.+ .+++|+.|+++.|++.|.+|..++.++.
T Consensus 147 l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 147 LTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 8999999999998764 4668899999999999988877766543
No 348
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=99.85 E-value=1.3e-21 Score=219.01 Aligned_cols=151 Identities=26% Similarity=0.351 Sum_probs=116.7
Q ss_pred ccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcC-CCCCceeEeecccccccCCCCeeeEE
Q 003368 645 FSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNI-RHRNLVRVITSCSSIDFQGNDFKALV 723 (825)
Q Consensus 645 f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~~~~~lv 723 (825)
|...++||+|+||+||.+.. .+|+.||||++... ..+.+.+|+++++++ +|||||++++++ .+++..++|
T Consensus 17 ~~~~~~LG~G~~g~V~~~~~-~~g~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~~~~~~-----~~~~~~~lv 87 (434)
T 2rio_A 17 VVSEKILGYGSSGTVVFQGS-FQGRPVAVKRMLID---FCDIALMEIKLLTESDDHPNVIRYYCSE-----TTDRFLYIA 87 (434)
T ss_dssp EEEEEEEEECSTTCEEEEEE-SSSSEEEEEEEEGG---GHHHHHHHHHHHHHHTTSTTBCCEEEEE-----ECSSEEEEE
T ss_pred eeccCeEeeCCCeEEEEEEE-ECCeEEEEEEEcHH---HHHHHHHHHHHHHhccCCCCcCeEEEEE-----ecCCeEEEE
Confidence 45568899999999987654 68999999998653 235678999999886 899999999884 346788999
Q ss_pred EEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCC-------
Q 003368 724 YQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNN------- 796 (825)
Q Consensus 724 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~------- 796 (825)
|||+. |+|.+++....... ......++..+..|+.|++.||+|||+. +|+||||||+|||++.+
T Consensus 88 ~E~~~-gsL~~~l~~~~~~~-----~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~~~~~~ 158 (434)
T 2rio_A 88 LELCN-LNLQDLVESKNVSD-----ENLKLQKEYNPISLLRQIASGVAHLHSL---KIIHRDLKPQNILVSTSSRFTADQ 158 (434)
T ss_dssp ECCCS-EEHHHHHHTC-----------------CCHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEECCHHHHSCC
T ss_pred EecCC-CCHHHHHhccCCCc-----hhhhhccchhHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCccccccc
Confidence 99995 69999996542111 0011123445678999999999999986 99999999999999754
Q ss_pred ------CcEEEcccCcccccccC
Q 003368 797 ------LTAHVGDFGLARLRQEV 813 (825)
Q Consensus 797 ------~~~ki~DFGla~~~~~~ 813 (825)
+.+||+|||+|+.....
T Consensus 159 ~~~~~~~~~kL~DFG~a~~~~~~ 181 (434)
T 2rio_A 159 QTGAENLRILISDFGLCKKLDSG 181 (434)
T ss_dssp TTCCCSCEEEECCCTTCEECCC-
T ss_pred ccCCCceEEEEcccccceecCCC
Confidence 48999999999987654
No 349
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=99.85 E-value=1.7e-21 Score=214.13 Aligned_cols=156 Identities=20% Similarity=0.342 Sum_probs=128.8
Q ss_pred ccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCC-----------CCCceeEeecccc
Q 003368 643 DGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIR-----------HRNLVRVITSCSS 711 (825)
Q Consensus 643 ~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~-----------H~niv~l~~~~~~ 711 (825)
++|...+.||+|+||+||+|+...+|+.||||++... ....+.+.+|++++++++ ||||+++++++..
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (373)
T 1q8y_A 19 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNH 97 (373)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEE
T ss_pred CeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC-ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhc
Confidence 5688999999999999999999889999999999753 234567889999999886 8999999998653
Q ss_pred cccCCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCe
Q 003368 712 IDFQGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNI 791 (825)
Q Consensus 712 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NI 791 (825)
.. ......++||||+ +|+|.+++... ....+++..+..|+.|++.||+|||+. .+|+||||||+||
T Consensus 98 ~~-~~~~~~~lv~e~~-~~~L~~~~~~~----------~~~~~~~~~~~~i~~qi~~aL~~lH~~--~~ivH~Dikp~NI 163 (373)
T 1q8y_A 98 KG-PNGVHVVMVFEVL-GENLLALIKKY----------EHRGIPLIYVKQISKQLLLGLDYMHRR--CGIIHTDIKPENV 163 (373)
T ss_dssp EE-TTEEEEEEEECCC-CEEHHHHHHHT----------TTSCCCHHHHHHHHHHHHHHHHHHHHT--TCEECSCCSGGGE
T ss_pred cC-CCCceEEEEEecC-CCCHHHHHHHh----------hccCCcHHHHHHHHHHHHHHHHHHHhc--CCEEecCCChHHe
Confidence 21 1223689999999 89999998532 123588999999999999999999983 2899999999999
Q ss_pred eec------CCCcEEEcccCcccccccC
Q 003368 792 LLD------NNLTAHVGDFGLARLRQEV 813 (825)
Q Consensus 792 Ll~------~~~~~ki~DFGla~~~~~~ 813 (825)
|++ ..+.+||+|||+|+.....
T Consensus 164 ll~~~~~~~~~~~~kl~Dfg~a~~~~~~ 191 (373)
T 1q8y_A 164 LMEIVDSPENLIQIKIADLGNACWYDEH 191 (373)
T ss_dssp EEEEEETTTTEEEEEECCCTTCEETTBC
T ss_pred EEeccCCCcCcceEEEcccccccccCCC
Confidence 994 4458999999999877543
No 350
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=99.84 E-value=1.4e-21 Score=218.15 Aligned_cols=148 Identities=24% Similarity=0.343 Sum_probs=116.3
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcC-CCCCceeEeecccccccCCCCee
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNI-RHRNLVRVITSCSSIDFQGNDFK 720 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~~~~~ 720 (825)
..+|...++||+|+||+||.... .+|+.||||++..... +.+.+|+++++++ +|||||++++++ .+....
T Consensus 23 ~~~y~~~~~LG~G~~G~V~~~~~-~~~~~vAvK~~~~~~~---~~~~~E~~~l~~l~~HpnIv~l~~~~-----~~~~~~ 93 (432)
T 3p23_A 23 KISFCPKDVLGHGAEGTIVYRGM-FDNRDVAVKRILPECF---SFADREVQLLRESDEHPNVIRYFCTE-----KDRQFQ 93 (432)
T ss_dssp TEEEEEEEEEEECGGGCEEEEEE-SSSSEEEEEEECTTTE---EECHHHHHHHHHSCCCTTBCCEEEEE-----EETTEE
T ss_pred cEEEecCCeeecCcCEEEEEEEE-eCCeEEEEEEECHHHH---HHHHHHHHHHHhccCCCCcCeEEEEE-----ecCCEE
Confidence 45688899999999998654333 5889999999865432 2356899999999 799999999885 346778
Q ss_pred eEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecC-----
Q 003368 721 ALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDN----- 795 (825)
Q Consensus 721 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~----- 795 (825)
|+||||+. |+|.+++.... ....+.++..++.|+++||+|||+. +|+||||||+|||++.
T Consensus 94 ~lv~E~~~-g~L~~~l~~~~-----------~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NIll~~~~~~~ 158 (432)
T 3p23_A 94 YIAIELCA-ATLQEYVEQKD-----------FAHLGLEPITLLQQTTSGLAHLHSL---NIVHRDLKPHNILISMPNAHG 158 (432)
T ss_dssp EEEEECCS-EEHHHHHHSSS-----------CCCCSSCHHHHHHHHHHHHHHHHHT---TCCCCCCSTTSEEECCCBTTT
T ss_pred EEEEECCC-CCHHHHHHhcC-----------CCccchhHHHHHHHHHHHHHHHHHC---cCEeCCCCHHHEEEecCCCCC
Confidence 99999996 69999986432 1233345678999999999999986 8999999999999943
Q ss_pred CCcEEEcccCcccccccC
Q 003368 796 NLTAHVGDFGLARLRQEV 813 (825)
Q Consensus 796 ~~~~ki~DFGla~~~~~~ 813 (825)
...+||+|||+|+.....
T Consensus 159 ~~~~kL~DFG~a~~~~~~ 176 (432)
T 3p23_A 159 KIKAMISDFGLCKKLAVG 176 (432)
T ss_dssp BCCEEECCTTEEECC---
T ss_pred ceeEEEecccceeeccCC
Confidence 346889999999987543
No 351
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=99.84 E-value=5.4e-22 Score=213.00 Aligned_cols=151 Identities=28% Similarity=0.433 Sum_probs=124.6
Q ss_pred HHhhcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc--hhHHHHHHHHHHhhcCCCCCceeEeecccccccC
Q 003368 638 LLKATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ--GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQ 715 (825)
Q Consensus 638 ~~~~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~--~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~ 715 (825)
.....++|...+.||+|+||.||+|++.. .||||++..... ...+.|.+|++++++++||||+++++++..
T Consensus 28 ~~i~~~~~~~~~~lg~G~~g~V~~~~~~~---~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~---- 100 (319)
T 2y4i_B 28 WDIPFEQLEIGELIGKGRFGQVYHGRWHG---EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMS---- 100 (319)
T ss_dssp SSSCCSCEECCCBCCCSSSSEEEEEEESS---SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEEC----
T ss_pred ccCCHHHeEEeeEeccCCceEEEEEEEcC---eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEec----
Confidence 33345778999999999999999999843 499999875432 233567899999999999999999998643
Q ss_pred CCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecC
Q 003368 716 GNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDN 795 (825)
Q Consensus 716 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~ 795 (825)
.+..++||||+++|+|.+++... ...+++.++..++.|+++||+|||+. +|+||||||+||+++
T Consensus 101 -~~~~~iv~e~~~~~~L~~~l~~~-----------~~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dlkp~NIl~~- 164 (319)
T 2y4i_B 101 -PPHLAIITSLCKGRTLYSVVRDA-----------KIVLDVNKTRQIAQEIVKGMGYLHAK---GILHKDLKSKNVFYD- 164 (319)
T ss_dssp -SSCEEEECBCCCSEEHHHHTTSS-----------CCCCCSHHHHHHHHHHHHHHHHHHHT---TCCCCCCCSTTEEEC-
T ss_pred -CCceEEEeecccCCcHHHHHHhc-----------CCCCCHHHHHHHHHHHHHHHHHHHhC---CccccCCChhhEEEe-
Confidence 55689999999999999999532 13588899999999999999999986 999999999999998
Q ss_pred CCcEEEcccCcccccc
Q 003368 796 NLTAHVGDFGLARLRQ 811 (825)
Q Consensus 796 ~~~~ki~DFGla~~~~ 811 (825)
++.+||+|||+|+...
T Consensus 165 ~~~~~l~Dfg~~~~~~ 180 (319)
T 2y4i_B 165 NGKVVITDFGLFSISG 180 (319)
T ss_dssp --CCEECCCSCCC---
T ss_pred CCCEEEeecCCccccc
Confidence 6799999999988654
No 352
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.84 E-value=1.6e-21 Score=223.27 Aligned_cols=136 Identities=23% Similarity=0.264 Sum_probs=105.1
Q ss_pred cccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc--------hhHHHHHHHHHHhhcCCCCCceeEeecccccccCCC
Q 003368 646 SSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ--------GASKSFAAECRALRNIRHRNLVRVITSCSSIDFQGN 717 (825)
Q Consensus 646 ~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~--------~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~~ 717 (825)
...++||+|+||+||+|+. .++.+|+|+...... ...+.|.+|++++++++||||+++..++.. .
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~--~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~-----~ 411 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSY--LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVD-----L 411 (540)
T ss_dssp ---------CCEEEEEEEC--SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEE-----T
T ss_pred CCCCEEeeCCCEEEEEEEE--CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEe-----C
Confidence 4467899999999999964 678899998643221 113458999999999999999955555432 3
Q ss_pred CeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCC
Q 003368 718 DFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNL 797 (825)
Q Consensus 718 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~ 797 (825)
+..++||||+++|+|.+++.. +..|+.|+++||+|||+. +|+||||||+|||++.
T Consensus 412 ~~~~lVmE~~~ggsL~~~l~~--------------------~~~i~~qi~~aL~~LH~~---gIiHrDiKp~NILl~~-- 466 (540)
T 3en9_A 412 DNKRIMMSYINGKLAKDVIED--------------------NLDIAYKIGEIVGKLHKN---DVIHNDLTTSNFIFDK-- 466 (540)
T ss_dssp TTTEEEEECCCSEEHHHHSTT--------------------CTHHHHHHHHHHHHHHHT---TEECTTCCTTSEEESS--
T ss_pred CccEEEEECCCCCCHHHHHHH--------------------HHHHHHHHHHHHHHHHHC---cCccCCCCHHHEEECC--
Confidence 456999999999999999842 457899999999999985 8999999999999999
Q ss_pred cEEEcccCcccccccC
Q 003368 798 TAHVGDFGLARLRQEV 813 (825)
Q Consensus 798 ~~ki~DFGla~~~~~~ 813 (825)
.+||+|||+|+.....
T Consensus 467 ~~kL~DFGla~~~~~~ 482 (540)
T 3en9_A 467 DLYIIDFGLGKISNLD 482 (540)
T ss_dssp SEEECCCTTCEECCCH
T ss_pred eEEEEECccCEECCCc
Confidence 9999999999987553
No 353
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=1.2e-20 Score=215.98 Aligned_cols=188 Identities=26% Similarity=0.365 Sum_probs=145.3
Q ss_pred CCCCEEEcccccccccCCCCcccccCCccccCCCCcCEEEcccCcccccCCccccCCCCCCEEEccccccccccCccccC
Q 003368 298 SNLSFLNLVANQFKGALPHSIVSGSIPSEIGKLVSLYLIEMDHNQFEGKIPEEMSRLQNLQFLNMRHNQLSGEIPSSFGN 377 (825)
Q Consensus 298 ~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 377 (825)
.+|+.|+|++|.+++ +|..+. ++|+.|+|++|+|+ .+| ..+++|++|+|++|+|++ +|. +..
T Consensus 59 ~~L~~L~Ls~n~L~~----------lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~ 120 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS----------LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA 120 (571)
T ss_dssp TTCSEEECCSSCCSC----------CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT
T ss_pred CCccEEEeCCCCCCc----------cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc
Confidence 378888888888773 444332 57888888888887 566 456788888888888886 666 554
Q ss_pred CCCCcEEEcccCccccccCCCCCCCCccceeecCCCCCccccchhhhcccccccccccCCCccccCCCccccccccccEE
Q 003368 378 LSSLVKLILGNNNLSGVIPSSLGNLKQLALLHLFQNDLSGAIPEEIFNISHMSDSLNFARNHLVGSIPPKIGNLKVLRMF 457 (825)
Q Consensus 378 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~ip~~~~~~~~l~~~l~l~~N~l~~~~p~~~~~l~~L~~L 457 (825)
+|++|+|++|+|++ +|. .+++|+.|+|++|++++ +|. .+..+ +.|++++|++++ +|. +. ++|+.|
T Consensus 121 --~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L-~~L~Ls~N~L~~-lp~-l~--~~L~~L 185 (571)
T 3cvr_A 121 --SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSL-EVLSVRNNQLTF-LPE-LP--ESLEAL 185 (571)
T ss_dssp --TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTC-CEEECCSSCCSC-CCC-CC--TTCCEE
T ss_pred --CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCc-CEEECCCCCCCC-cch-hh--CCCCEE
Confidence 78888888888886 555 57788888888888875 676 23344 678888888876 776 65 889999
Q ss_pred eecCceecccCCccccCCCCC-------CEEEccCCcCCCCCCccccCCCCCCEEECCCCccccccCcccccc
Q 003368 458 VVSSNNLSGEIPSEIGSCFYL-------QEIYMAENFFRGSIPSSLVSLKDLREIDLSQNNLSGKIPISLERL 523 (825)
Q Consensus 458 ~ls~N~l~g~~p~~~~~l~~L-------~~L~l~~N~l~g~~p~~~~~l~~L~~Ldls~N~l~~~~p~~~~~l 523 (825)
++++|+|+ .+|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..+..+
T Consensus 186 ~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 186 DVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp ECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred ECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 99999998 7777 665 67 99999999999 689989899999999999999999999887664
No 354
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=4.9e-20 Score=186.15 Aligned_cols=143 Identities=23% Similarity=0.288 Sum_probs=130.6
Q ss_pred EEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCC-ccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCC
Q 003368 36 VLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIP-GEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRN 114 (825)
Q Consensus 36 ~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 114 (825)
.+|+++|++.. +|..+. ..+++|+|++|+|++..| ..|..+++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 68888888864 676654 457899999999998755 56899999999999999999999999999999999999999
Q ss_pred CCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccCCccccccccccee
Q 003368 115 KLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSL 181 (825)
Q Consensus 115 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 181 (825)
+|++..+..|.++++|++|+|++|+|++..|..|.++++|++|+|++|+|++..|..|..+++|+.|
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL 158 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence 9999888999999999999999999999999999999999999999999999889999988888888
No 355
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=6.8e-20 Score=185.06 Aligned_cols=145 Identities=24% Similarity=0.328 Sum_probs=127.7
Q ss_pred EEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCC
Q 003368 36 VLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNK 115 (825)
Q Consensus 36 ~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 115 (825)
.++++++++. .+|..+. ++|++|+|++|+|+++.+..|..+++|++|+|++|+|++..|..|..+++|++|+|++|+
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 4566667765 4566554 689999999999998888899999999999999999999999999999999999999999
Q ss_pred CCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecC
Q 003368 116 LEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGL 183 (825)
Q Consensus 116 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 183 (825)
|+.+.+..|.++++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|..+++|+.|+|
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEe
Confidence 99877778899999999999999999988999999999999999999999888888888888888733
No 356
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.83 E-value=2.4e-20 Score=203.59 Aligned_cols=179 Identities=20% Similarity=0.144 Sum_probs=137.1
Q ss_pred EEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCcccc-CCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCC
Q 003368 36 VLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIG-RLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRN 114 (825)
Q Consensus 36 ~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 114 (825)
.++++++++.. +|..+. ..++.|+|++|+|++..+..|. ++++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 22 ~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 57888888764 566553 4588899999999988888887 8899999999999998888888888899999999999
Q ss_pred CCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcCCccccCC
Q 003368 115 KLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSIYNL 194 (825)
Q Consensus 115 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i~~l 194 (825)
+|+++.+..|.++++|++|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|..+
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~------------------- 159 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG------------------- 159 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC---------------------
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCc-------------------
Confidence 9888777788888888888888888888878888888888888888888874333222110
Q ss_pred CCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCCC--ccEEEeecccccC
Q 003368 195 SLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASN--LQSLEILGNNFFG 258 (825)
Q Consensus 195 ~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~--L~~L~L~~N~l~~ 258 (825)
..+++|+.|+|++|+|++..+..|..++. |+.|+|++|.+..
T Consensus 160 ----------------------~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 160 ----------------------NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp ------------------------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ----------------------ccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 14566777777777777655566666766 3677777777654
No 357
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=7.5e-20 Score=184.77 Aligned_cols=148 Identities=22% Similarity=0.225 Sum_probs=137.6
Q ss_pred CceeeceeecCC---------CCcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCC
Q 003368 19 FCDWEGITCSPR---------HRRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSH 89 (825)
Q Consensus 19 ~C~~~g~~c~~~---------~~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 89 (825)
.|.|..+.|... ..+++.|+|++|++.+..+..|..+++|++|+|++|+|++..|.+|.++++|++|+|++
T Consensus 10 ~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 10 TCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp EEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred EECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 467888888643 14799999999999988888999999999999999999999999999999999999999
Q ss_pred CcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcc
Q 003368 90 NSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGG 166 (825)
Q Consensus 90 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 166 (825)
|+|+...+..|..+++|++|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|.+..
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 99998888889999999999999999999999999999999999999999998888899999999999999999974
No 358
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=99.82 E-value=2.2e-20 Score=207.76 Aligned_cols=164 Identities=16% Similarity=0.184 Sum_probs=119.4
Q ss_pred hhcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc---hhHHHHHHHHHHhhcCCC-CCceeEeec-------
Q 003368 640 KATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ---GASKSFAAECRALRNIRH-RNLVRVITS------- 708 (825)
Q Consensus 640 ~~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~---~~~~~~~~E~~~l~~l~H-~niv~l~~~------- 708 (825)
..+..|...++||+|+||+||+|++..+|+.||||++..... ...+.|.+|+.+++.++| +|......+
T Consensus 75 ~~~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~ 154 (413)
T 3dzo_A 75 ERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPF 154 (413)
T ss_dssp SCCEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCC
T ss_pred CCceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccch
Confidence 345568888999999999999999989999999999874332 225679999999999987 332211111
Q ss_pred --ccc---c---c-cCC-----CCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHH
Q 003368 709 --CSS---I---D-FQG-----NDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLH 774 (825)
Q Consensus 709 --~~~---~---~-~~~-----~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH 774 (825)
+.. . . +.. ....+++|+++ +|+|.+++.... ........++|..+..|+.|+++||+|||
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~-----~~~~~~~~l~~~~~~~i~~qi~~aL~~LH 228 (413)
T 3dzo_A 155 DLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLL-----SHSSTHKSLVHHARLQLTLQVIRLLASLH 228 (413)
T ss_dssp EEEECCC---------------CCSEEEEEECC-SEEHHHHHHHHH-----HHTTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhh-----cccccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 000 0 0 000 12346666654 689998883110 00012346889999999999999999999
Q ss_pred hcCCCCeeecCCCCCCeeecCCCcEEEcccCccccccc
Q 003368 775 HHCQEPTIHCDLKPSNILLDNNLTAHVGDFGLARLRQE 812 (825)
Q Consensus 775 ~~~~~~ivHrdlk~~NILl~~~~~~ki~DFGla~~~~~ 812 (825)
+. +||||||||+|||++.++.+||+|||+|+....
T Consensus 229 ~~---~iiHrDiKp~NILl~~~~~~kL~DFG~a~~~~~ 263 (413)
T 3dzo_A 229 HY---GLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA 263 (413)
T ss_dssp HT---TEECSCCCGGGEEECTTCCEEECCGGGCEETTE
T ss_pred hC---CcccCCcccceEEEecCCeEEEEeccceeecCC
Confidence 85 999999999999999999999999999987544
No 359
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=9.1e-20 Score=199.06 Aligned_cols=158 Identities=21% Similarity=0.166 Sum_probs=138.8
Q ss_pred ceeeceeecCC---------CCcEEEEECCCCCCccccCcCCC-CCCCCCEEEcCCCcccccCCccccCCCCCCEEECCC
Q 003368 20 CDWEGITCSPR---------HRRVTVLDLKSKGLIGSLSPQIG-NLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSH 89 (825)
Q Consensus 20 C~~~g~~c~~~---------~~~l~~l~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 89 (825)
|.+..+.|... ...++.|||++|++.+..+..+. .+++|++|+|++|+|+++.|..|.++++|++|+|++
T Consensus 18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 18 CASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp EETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 56666777532 24688999999999988888888 999999999999999988889999999999999999
Q ss_pred CcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeeccccccccccCccC---CCCCCCCEEEcccCcCcc
Q 003368 90 NSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFL---GNITSLEAISLAYNSLGG 166 (825)
Q Consensus 90 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~ 166 (825)
|+|+...+..|..+++|++|+|++|+|+++.|..|.++++|+.|+|++|+|++..+..| ..+++|+.|+|++|+|++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99999888999999999999999999999999999999999999999999997666666 679999999999999996
Q ss_pred cCCcccccccc
Q 003368 167 NIPSSLGQLKE 177 (825)
Q Consensus 167 ~~p~~~~~l~~ 177 (825)
..+..|..++.
T Consensus 178 l~~~~~~~l~~ 188 (361)
T 2xot_A 178 LPLTDLQKLPA 188 (361)
T ss_dssp CCHHHHHHSCH
T ss_pred cCHHHhhhccH
Confidence 66566666654
No 360
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=183.56 Aligned_cols=151 Identities=21% Similarity=0.264 Sum_probs=137.7
Q ss_pred CceeeceeecCC---------CCcEEEEECCCCCCccccCc-CCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECC
Q 003368 19 FCDWEGITCSPR---------HRRVTVLDLKSKGLIGSLSP-QIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLS 88 (825)
Q Consensus 19 ~C~~~g~~c~~~---------~~~l~~l~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 88 (825)
.|.|..+.|... ...++.|+|++|++.+..+. .|..+++|++|+|++|+|+++.+.+|.++++|++|+|+
T Consensus 10 ~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 10 RCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred EECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 467888877643 14688999999999988664 58999999999999999999888899999999999999
Q ss_pred CCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccC
Q 003368 89 HNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNI 168 (825)
Q Consensus 89 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 168 (825)
+|+|++..|..|..+++|++|+|++|+|+++.|..|.++++|++|+|++|+|++..|..|..+++|+.|+|++|.++...
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999998999999999999999999998654
Q ss_pred C
Q 003368 169 P 169 (825)
Q Consensus 169 p 169 (825)
+
T Consensus 170 ~ 170 (220)
T 2v70_A 170 Y 170 (220)
T ss_dssp G
T ss_pred c
Confidence 3
No 361
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=6.2e-19 Score=179.27 Aligned_cols=154 Identities=23% Similarity=0.302 Sum_probs=112.6
Q ss_pred CCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeeccc
Q 003368 58 LREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQE 137 (825)
Q Consensus 58 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 137 (825)
-+.++.++++++ .+|..+. ++|++|+|++|+|++..|..|..+++|++|+|++|+|+.+.+..|..+++|++|+|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 356888888887 5666554 7888888888888888888888888888888888888876667778888888888888
Q ss_pred cccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcCCccccCCCCCceeecCCccccccCCchhhh
Q 003368 138 NNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLPPSLGL 217 (825)
Q Consensus 138 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~~~~ 217 (825)
|+|++..+..|..+++|++|+|++|+|+ .+|..+.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-------------------------------------------- 132 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE-------------------------------------------- 132 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGG--------------------------------------------
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccc--------------------------------------------
Confidence 8888777777788888888888888876 4444333
Q ss_pred cCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccCc
Q 003368 218 TLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGK 259 (825)
Q Consensus 218 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 259 (825)
.+++|+.|+|++|+|++..+..|..+++|+.|+|++|.+.+.
T Consensus 133 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 133 RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 445556666666666655555566666666666666666543
No 362
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=1e-19 Score=210.64 Aligned_cols=189 Identities=26% Similarity=0.391 Sum_probs=120.9
Q ss_pred EEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCC
Q 003368 36 VLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNK 115 (825)
Q Consensus 36 ~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 115 (825)
.+++..+.+...++ +..|++|+.|++++|.|+. +| .|..+++|+.|+|++|+|++..| |..+++|+.|+|++|+
T Consensus 25 ~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 25 KDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK 98 (605)
T ss_dssp HHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred HHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC
Confidence 34455555544333 4466777777777777763 33 47777777777777777776554 7777777777777777
Q ss_pred CCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcCCccccCCC
Q 003368 116 LEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSIYNLS 195 (825)
Q Consensus 116 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i~~l~ 195 (825)
|++ +| .|..+++|+.|+|++|+|++. +.+..+++|+.|+|++|+|++. ..|..+++|+.|
T Consensus 99 l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L-------------- 158 (605)
T 1m9s_A 99 IKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTL-------------- 158 (605)
T ss_dssp CCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEE--------------
T ss_pred CCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEE--------------
Confidence 774 23 577777777777777777743 3466777777777777777643 344444444444
Q ss_pred CCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccCcc
Q 003368 196 LLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGKL 260 (825)
Q Consensus 196 ~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 260 (825)
+|++|.+++..| + ..+++|+.|+|++|.|++. ..+..+++|+.|+|++|++.+..
T Consensus 159 -----~Ls~N~l~~~~~--l-~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 159 -----SLEDNQISDIVP--L-AGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp -----ECCSSCCCCCGG--G-TTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred -----ECcCCcCCCchh--h-ccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence 556666664333 2 2666777777777777653 34666777777777777665543
No 363
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=1.6e-19 Score=190.68 Aligned_cols=187 Identities=27% Similarity=0.390 Sum_probs=131.2
Q ss_pred EECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCC
Q 003368 37 LDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKL 116 (825)
Q Consensus 37 l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 116 (825)
+.+..+.+.+..+ +..+++|++|++++|.++.. | .+..+++|++|+|++|+|++..+ +..+++|++|+|++|++
T Consensus 29 ~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 29 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred HHhcCCCcccccc--hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence 3455555544322 34677888888888888743 4 47778888888888888886555 88888888888888888
Q ss_pred CCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcCCccccCCCC
Q 003368 117 EGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSIYNLSL 196 (825)
Q Consensus 117 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i~~l~~ 196 (825)
++ + ..+..+++|++|+|++|++++. +.+..+++|+.|+|++|++++. ..+..+++|+.|
T Consensus 103 ~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L--------------- 161 (291)
T 1h6t_A 103 KD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTL--------------- 161 (291)
T ss_dssp CC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEE---------------
T ss_pred CC-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEE---------------
Confidence 75 2 3478888888888888888754 4577888888888888888753 345555555555
Q ss_pred CceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccCc
Q 003368 197 LANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGK 259 (825)
Q Consensus 197 l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 259 (825)
++++|++++. ++ + ..+++|+.|+|++|.+++. | .+..+++|+.|++++|++...
T Consensus 162 ----~L~~N~l~~~-~~-l-~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 162 ----SLEDNQISDI-VP-L-AGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp ----ECCSSCCCCC-GG-G-TTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECC
T ss_pred ----EccCCccccc-hh-h-cCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCC
Confidence 6666666643 33 3 3677777777777777753 3 377777777777777776553
No 364
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=3.6e-19 Score=187.97 Aligned_cols=170 Identities=22% Similarity=0.329 Sum_probs=146.4
Q ss_pred CcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEc
Q 003368 32 RRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYL 111 (825)
Q Consensus 32 ~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 111 (825)
.+++.|++++|++... +.+..+++|++|+|++|++++..+ +..+++|++|+|++|++++. | .+..+++|++|+|
T Consensus 46 ~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEEEC
T ss_pred CcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC-h-hhccCCCCCEEEC
Confidence 5789999999998755 358999999999999999996554 99999999999999999863 3 4999999999999
Q ss_pred CCCCCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcCCccc
Q 003368 112 GRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSI 191 (825)
Q Consensus 112 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i 191 (825)
++|+|++. ..+..+++|+.|++++|++++. ..+..+++|+.|+|++|++++..| +..+++|+.|
T Consensus 120 ~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L---------- 183 (291)
T 1h6t_A 120 EHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL---------- 183 (291)
T ss_dssp TTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEE----------
T ss_pred CCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEE----------
Confidence 99999964 5799999999999999999976 679999999999999999987654 7777777777
Q ss_pred cCCCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCC
Q 003368 192 YNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGS 235 (825)
Q Consensus 192 ~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~ 235 (825)
++++|.+++ +|. + ..+++|+.|++++|.++..
T Consensus 184 ---------~L~~N~i~~-l~~-l-~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 184 ---------YLSKNHISD-LRA-L-AGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp ---------ECCSSCCCB-CGG-G-TTCTTCSEEEEEEEEEECC
T ss_pred ---------ECCCCcCCC-Chh-h-ccCCCCCEEECcCCcccCC
Confidence 777788874 553 3 3899999999999999863
No 365
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=99.79 E-value=1.7e-19 Score=186.88 Aligned_cols=138 Identities=20% Similarity=0.190 Sum_probs=106.3
Q ss_pred ccccceeccCCeeEEEEEEEcCCCeE--EEEEEeecccch------------------------hHHHHHHHHHHhhcCC
Q 003368 645 FSSTHLIGIGSFGSVYKGTFDRDGTI--VAIKVLNLQLQG------------------------ASKSFAAECRALRNIR 698 (825)
Q Consensus 645 f~~~~~ig~G~~g~Vy~~~~~~~g~~--vAvK~~~~~~~~------------------------~~~~~~~E~~~l~~l~ 698 (825)
|...+.||+|+||.||+|.+..+|+. ||||+++..... ....+.+|++.+.+++
T Consensus 49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~ 128 (258)
T 1zth_A 49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK 128 (258)
T ss_dssp EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence 56778999999999999998678999 999987543111 1236889999999999
Q ss_pred CCCc--eeEeecccccccCCCCeeeEEEEccCC-C----ChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHH
Q 003368 699 HRNL--VRVITSCSSIDFQGNDFKALVYQYMPN-G----SLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVD 771 (825)
Q Consensus 699 H~ni--v~l~~~~~~~~~~~~~~~~lv~e~~~~-g----sL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~ 771 (825)
|+++ ...+++ ...++||||+.+ | +|.++.. ..++.++..++.|++.|++
T Consensus 129 ~~~i~~p~~~~~---------~~~~lVmE~~g~~g~~~~~L~~~~~---------------~~~~~~~~~i~~qi~~~l~ 184 (258)
T 1zth_A 129 EAGVSVPQPYTY---------MKNVLLMEFIGEDELPAPTLVELGR---------------ELKELDVEGIFNDVVENVK 184 (258)
T ss_dssp HTTCCCCCEEEE---------ETTEEEEECCEETTEECCBHHHHGG---------------GGGGSCHHHHHHHHHHHHH
T ss_pred hCCCCCCeEEEc---------CCCEEEEEecCCCCCccccHHHHhh---------------ccChHHHHHHHHHHHHHHH
Confidence 8864 333332 245899999942 4 5554431 1223456789999999999
Q ss_pred HHH-hcCCCCeeecCCCCCCeeecCCCcEEEcccCcccccc
Q 003368 772 YLH-HHCQEPTIHCDLKPSNILLDNNLTAHVGDFGLARLRQ 811 (825)
Q Consensus 772 yLH-~~~~~~ivHrdlk~~NILl~~~~~~ki~DFGla~~~~ 811 (825)
||| +. +||||||||+|||+++ .++|+|||+|+...
T Consensus 185 ~lH~~~---givHrDlkp~NILl~~--~~~liDFG~a~~~~ 220 (258)
T 1zth_A 185 RLYQEA---ELVHADLSEYNIMYID--KVYFIDMGQAVTLR 220 (258)
T ss_dssp HHHHTS---CEECSSCSTTSEEESS--SEEECCCTTCEETT
T ss_pred HHHHHC---CEEeCCCCHHHEEEcC--cEEEEECcccccCC
Confidence 999 64 9999999999999998 99999999998764
No 366
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.79 E-value=3.3e-20 Score=220.20 Aligned_cols=210 Identities=22% Similarity=0.186 Sum_probs=111.4
Q ss_pred CCCC-CCCCceeeceeecCCCCcEEEEECCCCCCccccCcCCCCCCCCC-----EEEcCCCcccccCCccccCCCCCCEE
Q 003368 12 SWND-SHHFCDWEGITCSPRHRRVTVLDLKSKGLIGSLSPQIGNLSFLR-----EIHLSNNTIQGKIPGEIGRLFRLEAL 85 (825)
Q Consensus 12 ~w~~-~~~~C~~~g~~c~~~~~~l~~l~L~~n~l~~~~~~~~~~l~~L~-----~L~Ls~N~l~~~~p~~~~~l~~L~~L 85 (825)
.|.. .+..+.|.+.++.. .+++.|+|..|++... +..+.....|+ .++++.|.+. ..|..|..+.+|+.|
T Consensus 154 ~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L 229 (727)
T 4b8c_D 154 QPTGDSTPSGTATNSAVST--PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHAL 229 (727)
T ss_dssp ------------------------------------------------------------------------CCCCCCEE
T ss_pred CCcCCCCccccCCCceecC--CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEE
Confidence 4532 34567788877754 5799999998888763 44332222222 2333444444 567888889999999
Q ss_pred ECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCc
Q 003368 86 YLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLG 165 (825)
Q Consensus 86 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 165 (825)
+|++|.|. .+|..+..+++|++|+|++|+|+ .+|..|+++++|++|+|++|+|+ .+|..|++|++|++|+|++|.|+
T Consensus 230 ~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~ 306 (727)
T 4b8c_D 230 DLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT 306 (727)
T ss_dssp ECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC
T ss_pred ECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC
Confidence 99999988 66666778889999999999998 77888889999999999999998 67888889999999999999886
Q ss_pred ccCCcccccccccceecCcCcCCccccCCCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCCC
Q 003368 166 GNIPSSLGQLKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASN 245 (825)
Q Consensus 166 ~~~p~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 245 (825)
.+|..|+.+++|+.| +|++|.+++.+|..+......+..|+|++|.+++.+|..
T Consensus 307 -~lp~~~~~l~~L~~L-------------------~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------ 360 (727)
T 4b8c_D 307 -TLPWEFGNLCNLQFL-------------------GVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------ 360 (727)
T ss_dssp -CCCSSTTSCTTCCCE-------------------ECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC------
T ss_pred -ccChhhhcCCCccEE-------------------eCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------
Confidence 667767777777776 778888888777766522222334778888888877753
Q ss_pred ccEEEeecc
Q 003368 246 LQSLEILGN 254 (825)
Q Consensus 246 L~~L~L~~N 254 (825)
|+.|+++.|
T Consensus 361 l~~l~l~~n 369 (727)
T 4b8c_D 361 RRFIEINTD 369 (727)
T ss_dssp ---------
T ss_pred cceeEeecc
Confidence 455666666
No 367
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=5.2e-19 Score=204.70 Aligned_cols=135 Identities=22% Similarity=0.285 Sum_probs=86.9
Q ss_pred cCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccCccccCcCCCCCCcEEEcccccCCCCCCCccccccccccC
Q 003368 218 TLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLAYLNVAINNLGSGESDEMSFIHSLANC 297 (825)
Q Consensus 218 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~l 297 (825)
.+++|+.|+|++|.+++. | .+..+++|+.|+|++|++.+. ..+..+
T Consensus 85 ~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~l--------------------------------~~l~~l 130 (605)
T 1m9s_A 85 NLKNLGWLFLDENKIKDL-S-SLKDLKKLKSLSLEHNGISDI--------------------------------NGLVHL 130 (605)
T ss_dssp GCTTCCEEECCSSCCCCC-T-TSTTCTTCCEEECTTSCCCCC--------------------------------GGGGGC
T ss_pred cCCCCCEEECcCCCCCCC-h-hhccCCCCCEEEecCCCCCCC--------------------------------ccccCC
Confidence 566666667777766642 2 455566666666666555432 234556
Q ss_pred CCCCEEEcccccccccCCCCcccccCCccccCCCCcCEEEcccCcccccCCccccCCCCCCEEEccccccccccCccccC
Q 003368 298 SNLSFLNLVANQFKGALPHSIVSGSIPSEIGKLVSLYLIEMDHNQFEGKIPEEMSRLQNLQFLNMRHNQLSGEIPSSFGN 377 (825)
Q Consensus 298 ~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 377 (825)
++|+.|+|++|.+++ + ..+..+++|+.|+|++|++++..| +..+++|+.|+|++|+|++. +.+..
T Consensus 131 ~~L~~L~Ls~N~l~~----------l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~ 195 (605)
T 1m9s_A 131 PQLESLYLGNNKITD----------I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAG 195 (605)
T ss_dssp TTCSEEECCSSCCCC----------C-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTT
T ss_pred CccCEEECCCCccCC----------c-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHcc
Confidence 677777777777663 2 356677777777777777776555 77777777777777777753 34777
Q ss_pred CCCCcEEEcccCccccccCCCCCC
Q 003368 378 LSSLVKLILGNNNLSGVIPSSLGN 401 (825)
Q Consensus 378 l~~L~~L~Ls~N~l~~~~p~~~~~ 401 (825)
+++|+.|+|++|++.+.....+..
T Consensus 196 l~~L~~L~L~~N~l~~~p~~~~~~ 219 (605)
T 1m9s_A 196 LKNLDVLELFSQECLNKPINHQSN 219 (605)
T ss_dssp CTTCSEEECCSEEEECCCCCCCSS
T ss_pred CCCCCEEEccCCcCcCCccccccc
Confidence 777778888877777544333333
No 368
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.77 E-value=2.6e-21 Score=222.67 Aligned_cols=184 Identities=20% Similarity=0.159 Sum_probs=95.7
Q ss_pred CCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccce
Q 003368 53 GNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKE 132 (825)
Q Consensus 53 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 132 (825)
..+++|+.|+|++|+++ .+|..++.+++|+.|++++|......|.. +..+.+.+.+|..++.+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhccc
Confidence 45566666666666665 55666666666666666555411000000 0011244556666777777777
Q ss_pred ee-ccccc-------------cccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcCCccccCCCCCc
Q 003368 133 LA-IQENN-------------LTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSIYNLSLLA 198 (825)
Q Consensus 133 L~-L~~N~-------------l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i~~l~~l~ 198 (825)
|+ ++.|. ++...+ ..|+.|+|++|+|++ +|. |+.+++|+.|
T Consensus 414 L~~l~~n~~~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L----------------- 468 (567)
T 1dce_A 414 VDPMRAAYLDDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHL----------------- 468 (567)
T ss_dssp HCGGGHHHHHHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEE-----------------
T ss_pred CcchhhcccchhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEe-----------------
Confidence 66 45543 332211 136666666666664 343 5555555554
Q ss_pred eeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccCcc-ccCcCCCCCCcEEEccc
Q 003368 199 NFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGKL-SVNFGDMKSLAYLNVAI 277 (825)
Q Consensus 199 ~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~ls~ 277 (825)
+|++|+++ .+|..+. .+++|+.|+|++|.|++ +| .|.++++|+.|+|++|++.+.. |..++.+++|+.|++++
T Consensus 469 --~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 469 --DLSHNRLR-ALPPALA-ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp --ECCSSCCC-CCCGGGG-GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred --ecCccccc-ccchhhh-cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecC
Confidence 55555555 5555544 55666666666666654 34 5555555666666555555543 44444333333333333
Q ss_pred cc
Q 003368 278 NN 279 (825)
Q Consensus 278 N~ 279 (825)
|.
T Consensus 543 N~ 544 (567)
T 1dce_A 543 NS 544 (567)
T ss_dssp SG
T ss_pred Cc
Confidence 33
No 369
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.75 E-value=4.4e-18 Score=167.83 Aligned_cols=132 Identities=28% Similarity=0.382 Sum_probs=120.3
Q ss_pred EEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCc-cccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCC
Q 003368 35 TVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPG-EIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGR 113 (825)
Q Consensus 35 ~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 113 (825)
+.+|++++++ +.+|..+.. +|++|+|++|+|++..+. .|+.+++|++|+|++|+|++..|..|..+++|++|+|++
T Consensus 11 ~~l~~s~~~l-~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCC-SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCc-CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 4678888888 567776654 899999999999977765 599999999999999999999999999999999999999
Q ss_pred CCCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccCC
Q 003368 114 NKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIP 169 (825)
Q Consensus 114 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 169 (825)
|+|++..|..|.++++|++|+|++|+|++..|..|..+++|++|+|++|.+++..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99999999999999999999999999999999999999999999999999987554
No 370
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.75 E-value=8e-21 Score=218.60 Aligned_cols=190 Identities=22% Similarity=0.262 Sum_probs=106.6
Q ss_pred ccCCCCCEEEcccccccccCCCCcccccCCccccCCCCcCEEEcccCc-------------ccccCCccccCCCCCCEEE
Q 003368 295 ANCSNLSFLNLVANQFKGALPHSIVSGSIPSEIGKLVSLYLIEMDHNQ-------------FEGKIPEEMSRLQNLQFLN 361 (825)
Q Consensus 295 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip~~l~~l~~L~~L~L~~N~-------------l~~~~p~~~~~l~~L~~L~ 361 (825)
..++.|+.|+|++|+++ .+|..++++++|+.|++++|. +.+.+|..++.+++|+.|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~----------~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~ 415 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST----------VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 415 (567)
T ss_dssp STTTTSSSCCCCHHHHH----------HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred ccCccceeccCChhhHH----------hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCc
Confidence 34566667777777766 566667777777777766554 4445555566666666665
Q ss_pred -ccccccccccCccccCCCCCcEEEcccCccccccCCCCCCCCccceeecCCCCCccccchhhhcccccccccccCCCcc
Q 003368 362 -MRHNQLSGEIPSSFGNLSSLVKLILGNNNLSGVIPSSLGNLKQLALLHLFQNDLSGAIPEEIFNISHMSDSLNFARNHL 440 (825)
Q Consensus 362 -Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~ip~~~~~~~~l~~~l~l~~N~l 440 (825)
++.|.+. +|..+.+++|.+++..+. .|+.|+|++|++++ +|. +..+..+ +.|++++|++
T Consensus 416 ~l~~n~~~-----------~L~~l~l~~n~i~~l~~~------~L~~L~Ls~n~l~~-lp~-~~~l~~L-~~L~Ls~N~l 475 (567)
T 1dce_A 416 PMRAAYLD-----------DLRSKFLLENSVLKMEYA------DVRVLHLAHKDLTV-LCH-LEQLLLV-THLDLSHNRL 475 (567)
T ss_dssp GGGHHHHH-----------HHHHHHHHHHHHHHHHHT------TCSEEECTTSCCSS-CCC-GGGGTTC-CEEECCSSCC
T ss_pred chhhcccc-----------hhhhhhhhcccccccCcc------CceEEEecCCCCCC-CcC-ccccccC-cEeecCcccc
Confidence 4544432 222333344444432221 24455555555542 443 4443333 3444455544
Q ss_pred ccCCCccccccccccEEeecCceecccCCccccCCCCCCEEEccCCcCCCCC-CccccCCCCCCEEECCCCccccccC
Q 003368 441 VGSIPPKIGNLKVLRMFVVSSNNLSGEIPSEIGSCFYLQEIYMAENFFRGSI-PSSLVSLKDLREIDLSQNNLSGKIP 517 (825)
Q Consensus 441 ~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~-p~~~~~l~~L~~Ldls~N~l~~~~p 517 (825)
+ .+|..++.+++|+.|+|++|+|++ +| .++.+++|+.|+|++|++++.+ |..++.+++|+.|+|++|++++.+|
T Consensus 476 ~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 476 R-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp C-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred c-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 4 455556666666666666666664 45 5666666666666666666554 6666666666666666666665544
No 371
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.75 E-value=6.1e-19 Score=209.37 Aligned_cols=197 Identities=19% Similarity=0.195 Sum_probs=125.3
Q ss_pred CCCcEEEcccccCCCCCCccccCCCCccEEEeecccccCccccCcCCCCCCcEEEcccccCCCCCCCccccccccccCCC
Q 003368 220 SNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLAYLNVAINNLGSGESDEMSFIHSLANCSN 299 (825)
Q Consensus 220 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~l~~ 299 (825)
+.++.|+|.+|.+... +. ..|+.++|+.|.+.+. +++.|.+. ..+..+..++.
T Consensus 173 ~~~~~l~L~~n~~~~~-~~-----~~l~~l~Ls~~~i~~~--------------~~~~n~~~-------~~~~~~~~l~~ 225 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQ-----ALLQHKKLSQYSIDED--------------DDIENRMV-------MPKDSKYDDQL 225 (727)
T ss_dssp ----------------------------------------------------------------------------CCCC
T ss_pred CccceEEeeCCCCCcc-hh-----hHhhcCccCcccccCc--------------ccccccee-------cChhhhccCCC
Confidence 4567777777777642 22 2344555555554322 22233332 12456778899
Q ss_pred CCEEEcccccccccCCCCcccccCCccccCCCCcCEEEcccCcccccCCccccCCCCCCEEEccccccccccCccccCCC
Q 003368 300 LSFLNLVANQFKGALPHSIVSGSIPSEIGKLVSLYLIEMDHNQFEGKIPEEMSRLQNLQFLNMRHNQLSGEIPSSFGNLS 379 (825)
Q Consensus 300 L~~L~L~~N~l~~~~~~~~~~~~ip~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 379 (825)
|+.|+|++|.+. .+|..+..+++|+.|+|++|.|+ .+|..|+++++|++|+|++|+|+ .+|..|+.++
T Consensus 226 L~~L~Ls~n~l~----------~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 226 WHALDLSNLQIF----------NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp CCEEECTTSCCS----------CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred CcEEECCCCCCC----------CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 999999999998 68888889999999999999999 88999999999999999999999 7899999999
Q ss_pred CCcEEEcccCccccccCCCCCCCCccceeecCCCCCccccchhhhcccccccccccCCCccccCCCccccccccccEEee
Q 003368 380 SLVKLILGNNNLSGVIPSSLGNLKQLALLHLFQNDLSGAIPEEIFNISHMSDSLNFARNHLVGSIPPKIGNLKVLRMFVV 459 (825)
Q Consensus 380 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~ip~~~~~~~~l~~~l~l~~N~l~~~~p~~~~~l~~L~~L~l 459 (825)
+|++|+|++|.|+ .+|..|+.+++|+.|+|++|.|+|.+|..+.........+++++|.++|.+|..+ ..|++
T Consensus 294 ~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l------~~l~l 366 (727)
T 4b8c_D 294 QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER------RFIEI 366 (727)
T ss_dssp TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC------------
T ss_pred CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccc------ceeEe
Confidence 9999999999997 6788899999999999999999999998887654433457889999998888754 45556
Q ss_pred cCc
Q 003368 460 SSN 462 (825)
Q Consensus 460 s~N 462 (825)
+.|
T Consensus 367 ~~n 369 (727)
T 4b8c_D 367 NTD 369 (727)
T ss_dssp ---
T ss_pred ecc
Confidence 665
No 372
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=4e-18 Score=169.01 Aligned_cols=154 Identities=16% Similarity=0.222 Sum_probs=85.7
Q ss_pred cCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCE
Q 003368 77 GRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEA 156 (825)
Q Consensus 77 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 156 (825)
+.+++|+.|++++|.|+ .+| .+..+++|++|++++|.++. +..+..+++|++|++++|++++..|..|+.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 33445555555555555 333 35555555555555554442 235555666666666666666555556666666666
Q ss_pred EEcccCcCcccCCcccccccccceecCcCcCCccccCCCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCC
Q 003368 157 ISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSF 236 (825)
Q Consensus 157 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~ 236 (825)
|+|++|++++..|..|+.+++|++| ++++|.+.+.+| .+. .+++|+.|++++|.+++..
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L-------------------~L~~n~~i~~~~-~l~-~l~~L~~L~l~~n~i~~~~ 175 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSI-------------------DLSYNGAITDIM-PLK-TLPELKSLNIQFDGVHDYR 175 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEE-------------------ECCSCTBCCCCG-GGG-GCSSCCEEECTTBCCCCCT
T ss_pred EEecCCccCcHhHHHHhhCCCCCEE-------------------EccCCCCccccH-hhc-CCCCCCEEECCCCCCcChH
Confidence 6666666665555555555555544 444444222343 222 5677777777777776532
Q ss_pred CccccCCCCccEEEeeccccc
Q 003368 237 PLAFSNASNLQSLEILGNNFF 257 (825)
Q Consensus 237 p~~~~~l~~L~~L~L~~N~l~ 257 (825)
.+..+++|+.|++++|++.
T Consensus 176 --~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 176 --GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp --TGGGCSSCCEEEECBC---
T ss_pred --HhccCCCCCEEEeeCcccC
Confidence 5667777777777777653
No 373
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=1.4e-18 Score=180.57 Aligned_cols=170 Identities=20% Similarity=0.326 Sum_probs=92.5
Q ss_pred CCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceee
Q 003368 55 LSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELA 134 (825)
Q Consensus 55 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 134 (825)
+.+++.++++.|.++... .+..+++|++|++++|.|+. +| .+..+++|++|+|++|+|++..+ |..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 344445555555555322 34555555555555555552 23 45555555555555555554332 55555555555
Q ss_pred ccccccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcCCccccCCCCCceeecCCccccccCCch
Q 003368 135 IQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLPPS 214 (825)
Q Consensus 135 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~ 214 (825)
|++|++++. |... . ++|+.|+|++|++++. + .|..+++|+.| ++++|++++ +| .
T Consensus 92 L~~N~l~~l-~~~~-~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L-------------------~Ls~N~i~~-~~-~ 145 (263)
T 1xeu_A 92 VNRNRLKNL-NGIP-S-ACLSRLFLDNNELRDT-D-SLIHLKNLEIL-------------------SIRNNKLKS-IV-M 145 (263)
T ss_dssp CCSSCCSCC-TTCC-C-SSCCEEECCSSCCSBS-G-GGTTCTTCCEE-------------------ECTTSCCCB-CG-G
T ss_pred CCCCccCCc-Cccc-c-CcccEEEccCCccCCC-h-hhcCcccccEE-------------------ECCCCcCCC-Ch-H
Confidence 555555532 2211 1 5566666666665532 1 23344443333 444555542 22 2
Q ss_pred hhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccCc
Q 003368 215 LGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGK 259 (825)
Q Consensus 215 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 259 (825)
+. .+++|+.|+|++|++++. ..+..+++|+.|++++|++.+.
T Consensus 146 l~-~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 146 LG-FLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp GG-GCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred Hc-cCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 22 567777777777777765 5577777778888877777654
No 374
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=5.1e-18 Score=167.40 Aligned_cols=120 Identities=24% Similarity=0.354 Sum_probs=108.6
Q ss_pred CEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCc-CCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeeccc
Q 003368 59 REIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPG-NLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQE 137 (825)
Q Consensus 59 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 137 (825)
+.+++++|+++ .+|..+.. +|++|+|++|+|++..+. .|..+++|++|+|++|+|++..|.+|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 78999999997 67876654 899999999999977775 589999999999999999999999999999999999999
Q ss_pred cccccccCccCCCCCCCCEEEcccCcCcccCCccccccccccee
Q 003368 138 NNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSL 181 (825)
Q Consensus 138 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 181 (825)
|+|++..|..|.++++|++|+|++|+|++.+|..|..+++|++|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEE
Confidence 99999989999999999999999999998888888888777777
No 375
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=6.9e-18 Score=167.27 Aligned_cols=142 Identities=18% Similarity=0.255 Sum_probs=117.3
Q ss_pred CcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEc
Q 003368 32 RRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYL 111 (825)
Q Consensus 32 ~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 111 (825)
.+++.|++++|++. .+| .+..+++|++|++++|.++ .+..|..+++|++|++++|++++..|..|..+++|++|+|
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 46888999988887 555 6888899999999999776 3457888999999999999998878888999999999999
Q ss_pred CCCCCCCCCChhhhcccccceeeccccc-cccccCccCCCCCCCCEEEcccCcCcccCCccccccccccee
Q 003368 112 GRNKLEGSIPSEFVSLYNLKELAIQENN-LTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSL 181 (825)
Q Consensus 112 s~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 181 (825)
++|++++..|..|..+++|++|+|++|+ ++ .+| .+..+++|+.|++++|++++ ++ .+..+++|+.|
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L 186 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQL 186 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEE
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEE
Confidence 9999988788888999999999999998 55 455 68888999999999999875 33 66677777776
No 376
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=5.7e-18 Score=175.89 Aligned_cols=169 Identities=22% Similarity=0.283 Sum_probs=138.8
Q ss_pred CcEEEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEc
Q 003368 32 RRVTVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYL 111 (825)
Q Consensus 32 ~~l~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 111 (825)
.+++.++++.+.+.+.. .+..+++|++|++++|+|+ .+| .+..+++|++|+|++|+|++..+ |..+++|++|+|
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 34566778888887544 6788999999999999998 456 78999999999999999997665 999999999999
Q ss_pred CCCCCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcCCccc
Q 003368 112 GRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSI 191 (825)
Q Consensus 112 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i 191 (825)
++|++++. |. +.. ++|++|+|++|++++. +.+..+++|+.|+|++|++++. | .+..+++|+.|
T Consensus 93 ~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L---------- 155 (263)
T 1xeu_A 93 NRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVL---------- 155 (263)
T ss_dssp CSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEE----------
T ss_pred CCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEE----------
Confidence 99999964 43 233 8999999999999964 3689999999999999999864 3 57777777766
Q ss_pred cCCCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCC
Q 003368 192 YNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGS 235 (825)
Q Consensus 192 ~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~ 235 (825)
++++|++++. ..+ ..+++|+.|++++|.+++.
T Consensus 156 ---------~L~~N~i~~~--~~l-~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 156 ---------DLHGNEITNT--GGL-TRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ---------ECTTSCCCBC--TTS-TTCCCCCEEEEEEEEEECC
T ss_pred ---------ECCCCcCcch--HHh-ccCCCCCEEeCCCCcccCC
Confidence 7778888754 333 3789999999999999865
No 377
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=2.6e-18 Score=185.07 Aligned_cols=258 Identities=16% Similarity=0.144 Sum_probs=151.9
Q ss_pred CCCCCEEEcCCCccc--ccCCccccCCCCCCEEECCCCcCCCCCCcCCCC--------CCCCCEEEcCCCCCCCCCChhh
Q 003368 55 LSFLREIHLSNNTIQ--GKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSY--------CSRLIGLYLGRNKLEGSIPSEF 124 (825)
Q Consensus 55 l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~--------l~~L~~L~Ls~N~l~~~~p~~~ 124 (825)
+++|+.|||++|+|. ...+..+. .+..+++..|. +.+.+|.+ |++|+.|+|.+ .++.+.+.+|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~---~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYP---NGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSG---GGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred hccCeEEecCcceeEEecCcccccc---ccccccccccc---cCHHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence 455555555555555 22222221 13333333332 23445555 66666666666 6665555666
Q ss_pred hcccccceeeccccccccccCccCCCCCCCCEEEcccCc----CcccCCcccccccccc-eecCc--CcCCcccc----C
Q 003368 125 VSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNS----LGGNIPSSLGQLKELK-SLGLG--GTIPPSIY----N 193 (825)
Q Consensus 125 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~----l~~~~p~~~~~l~~L~-~L~L~--~~~p~~i~----~ 193 (825)
.++++|+.|++++|.++.+.+.+|.+..++..+.+..+. .....+.+|.++..|+ .+.+. +.++..+. .
T Consensus 121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~ 200 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQ 200 (329)
T ss_dssp TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCC
T ss_pred hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccC
Confidence 666666666666666665556666665555555544421 2223334455555554 22221 11111111 1
Q ss_pred CCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccCccccCcCCCCCCc-E
Q 003368 194 LSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLA-Y 272 (825)
Q Consensus 194 l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~ 272 (825)
...+..+.+.++-.. .-...+...+++|+.|+|++|.++.+.+.+|.++++|+.|+|.+| +..+.+.+|.++.+|+ .
T Consensus 201 ~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~ 278 (329)
T 3sb4_A 201 PRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGT 278 (329)
T ss_dssp GGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred ccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEE
Confidence 222233333222111 111112224788999999999998888888999999999999888 7777888899999998 9
Q ss_pred EEcccccCCCCCCCccccccccccCCCCCEEEcccccccccCCCCcccccCCc-cccCCCCcCEEEc
Q 003368 273 LNVAINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALPHSIVSGSIPS-EIGKLVSLYLIEM 338 (825)
Q Consensus 273 L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip~-~l~~l~~L~~L~L 338 (825)
+++.. ++..++ ..+|.+|++|+.+++++|+++ .|+. .|.++++|+.++.
T Consensus 279 l~l~~-~l~~I~------~~aF~~c~~L~~l~l~~n~i~----------~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 279 LELPA-SVTAIE------FGAFMGCDNLRYVLATGDKIT----------TLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECT-TCCEEC------TTTTTTCTTEEEEEECSSCCC----------EECTTTTCTTCCCCEEEC
T ss_pred EEEcc-cceEEc------hhhhhCCccCCEEEeCCCccC----------ccchhhhcCCcchhhhcc
Confidence 99877 565544 357888999999999999888 4443 6778888887753
No 378
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.70 E-value=2.5e-17 Score=155.29 Aligned_cols=128 Identities=22% Similarity=0.198 Sum_probs=109.2
Q ss_pred CCCCCEEEcCCCccc-ccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhccccccee
Q 003368 55 LSFLREIHLSNNTIQ-GKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKEL 133 (825)
Q Consensus 55 l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 133 (825)
.++|++|++++|.++ +.+|..|..+++|++|+|++|+|++. ..|..+++|++|+|++|+|++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467889999999988 77888888899999999999999866 778889999999999999998788888889999999
Q ss_pred eccccccccc-cCccCCCCCCCCEEEcccCcCcccCC---cccccccccceecCc
Q 003368 134 AIQENNLTGG-IPHFLGNITSLEAISLAYNSLGGNIP---SSLGQLKELKSLGLG 184 (825)
Q Consensus 134 ~L~~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~L~ 184 (825)
++++|++++. .+..++.+++|++|++++|++++..+ ..|..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 9999999864 34788899999999999999987665 578888888888664
No 379
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.70 E-value=7.9e-17 Score=156.69 Aligned_cols=129 Identities=32% Similarity=0.358 Sum_probs=112.9
Q ss_pred ECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCC
Q 003368 38 DLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLE 117 (825)
Q Consensus 38 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 117 (825)
+++++++. .+|..+ .++|++|++++|++++..+..|+.+++|++|+|++|+|++..+..|..+++|++|+|++|+|+
T Consensus 13 ~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 89 (177)
T 2o6r_A 13 RCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ 89 (177)
T ss_dssp ECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc
Confidence 33445554 345444 378999999999999888888999999999999999999888888999999999999999999
Q ss_pred CCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccCC
Q 003368 118 GSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIP 169 (825)
Q Consensus 118 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 169 (825)
+..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|.+++..|
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 90 SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 8888889999999999999999998777788999999999999999987554
No 380
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.70 E-value=1.2e-16 Score=157.47 Aligned_cols=127 Identities=24% Similarity=0.309 Sum_probs=116.1
Q ss_pred EEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCC
Q 003368 36 VLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNK 115 (825)
Q Consensus 36 ~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 115 (825)
.++++++++. .+|..+. ++|++|+|++|+|+ .+|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|+
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 5788888886 5666553 68999999999999 788999999999999999999999999999999999999999999
Q ss_pred CCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcc
Q 003368 116 LEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGG 166 (825)
Q Consensus 116 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 166 (825)
|+++.|.+|.++++|++|+|++|+|++..+..|..+++|+.|+|++|.+..
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 999988999999999999999999998777889999999999999999974
No 381
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=4.2e-17 Score=157.12 Aligned_cols=127 Identities=26% Similarity=0.257 Sum_probs=87.1
Q ss_pred CCCCCEEEcCCCccc-ccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhccccccee
Q 003368 55 LSFLREIHLSNNTIQ-GKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKEL 133 (825)
Q Consensus 55 l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 133 (825)
.++|++|+|++|+++ +.+|..|..+++|++|+|++|.|++. ..|..+++|++|+|++|++++.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 356777777777776 56666677777777777777777655 667777777777777777776667767677777777
Q ss_pred ecccccccccc-CccCCCCCCCCEEEcccCcCcccCC---cccccccccceecC
Q 003368 134 AIQENNLTGGI-PHFLGNITSLEAISLAYNSLGGNIP---SSLGQLKELKSLGL 183 (825)
Q Consensus 134 ~L~~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~L 183 (825)
+|++|++++.. +..|..+++|++|++++|++++..+ ..|..+++|++|++
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 154 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDG 154 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETT
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecC
Confidence 77777777542 2567777777777777777765444 35666666666644
No 382
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=2.3e-17 Score=159.05 Aligned_cols=136 Identities=20% Similarity=0.144 Sum_probs=123.7
Q ss_pred CcEEEEECCCCCCc-cccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEE
Q 003368 32 RRVTVLDLKSKGLI-GSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLY 110 (825)
Q Consensus 32 ~~l~~l~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 110 (825)
.+++.|++++|++. +.+|..+..+++|++|+|++|+|++. ..|..+++|++|+|++|++++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 68999999999998 78899999999999999999999966 8899999999999999999988899898999999999
Q ss_pred cCCCCCCCCCC-hhhhcccccceeeccccccccccC---ccCCCCCCCCEEEcccCcCcccCCc
Q 003368 111 LGRNKLEGSIP-SEFVSLYNLKELAIQENNLTGGIP---HFLGNITSLEAISLAYNSLGGNIPS 170 (825)
Q Consensus 111 Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~p~ 170 (825)
|++|+|++..+ ..|..+++|++|++++|.+++..+ ..|..+++|++|++++|.+. .+|.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 99999996532 789999999999999999996655 58999999999999999997 4444
No 383
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.67 E-value=3.8e-17 Score=154.00 Aligned_cols=128 Identities=21% Similarity=0.189 Sum_probs=117.8
Q ss_pred CcEEEEECCCCCCc-cccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEE
Q 003368 32 RRVTVLDLKSKGLI-GSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLY 110 (825)
Q Consensus 32 ~~l~~l~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 110 (825)
.+++.|++++|++. +.+|+.+..+++|++|++++|++++. ..|+.+++|++|+|++|+|++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 67999999999998 78999999999999999999999976 7899999999999999999988899888999999999
Q ss_pred cCCCCCCCC-CChhhhcccccceeeccccccccccC---ccCCCCCCCCEEEccc
Q 003368 111 LGRNKLEGS-IPSEFVSLYNLKELAIQENNLTGGIP---HFLGNITSLEAISLAY 161 (825)
Q Consensus 111 Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~Ls~ 161 (825)
+++|++++. .+..+..+++|++|++++|++++..+ ..+..+++|++||+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999974 34889999999999999999997766 5799999999999874
No 384
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=3.6e-16 Score=154.11 Aligned_cols=121 Identities=23% Similarity=0.308 Sum_probs=110.5
Q ss_pred CEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeecccc
Q 003368 59 REIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQEN 138 (825)
Q Consensus 59 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 138 (825)
+.+++++|+++ .+|..+. .+|++|+|++|+|+ .+|..|..+++|+.|+|++|+|+++.+.+|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 68999999999 6777654 68999999999998 77899999999999999999999988899999999999999999
Q ss_pred ccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecC
Q 003368 139 NLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGL 183 (825)
Q Consensus 139 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 183 (825)
+|++..|..|.++++|++|+|++|+|++..+..|..+++|+.|+|
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAI 133 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEe
Confidence 999999999999999999999999999777777888888888833
No 385
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=6.6e-16 Score=150.10 Aligned_cols=133 Identities=23% Similarity=0.248 Sum_probs=116.7
Q ss_pred CCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeeccc
Q 003368 58 LREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQE 137 (825)
Q Consensus 58 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 137 (825)
.+.+++++|+++ .+|..+. ++|++|++++|++++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 478999999999 5665543 6899999999999988888899999999999999999988888899999999999999
Q ss_pred cccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcCCccccCCCCCceeecCCccccccCC
Q 003368 138 NNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLP 212 (825)
Q Consensus 138 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp 212 (825)
|+|++..+..|..+++|++|+|++|++++..+..|..+++|++| ++++|.+++..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L-------------------~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI-------------------WLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE-------------------ECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEE-------------------EecCCCeeccCc
Confidence 99998888889999999999999999997777667888888877 667777776544
No 386
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=3.2e-16 Score=168.65 Aligned_cols=256 Identities=13% Similarity=0.100 Sum_probs=195.0
Q ss_pred CCcEEEEECCCCCCc--cccCcCCCCCCCCCEEEcCCCcccccCCccccC--------CCCCCEEECCCCcCCCCCCcCC
Q 003368 31 HRRVTVLDLKSKGLI--GSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGR--------LFRLEALYLSHNSLVGEIPGNL 100 (825)
Q Consensus 31 ~~~l~~l~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~--------l~~L~~L~Ls~N~l~~~~p~~~ 100 (825)
..+++.|||++|++. ...+..+ +.++.+.+..|.| .+.+|.+ +++|+.|+|++ .++.+.+.+|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred hccCeEEecCcceeEEecCccccc---ccccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence 357999999999987 3333333 2256666777743 4567777 99999999999 8988888999
Q ss_pred CCCCCCCEEEcCCCCCCCCCChhhhcccccceeecccccc----ccccCccCCCCCCCC-EEEcccCcCcccCCccc---
Q 003368 101 SYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQENNL----TGGIPHFLGNITSLE-AISLAYNSLGGNIPSSL--- 172 (825)
Q Consensus 101 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l----~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~--- 172 (825)
.+|++|+.|++++|.+..+.+.+|.++.++..+.+..+.. ....+..|.++.+|+ .+++.... .++..+
T Consensus 121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~ 197 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKA 197 (329)
T ss_dssp TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHT
T ss_pred hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhhc
Confidence 9999999999999999988889999998888888877432 334455677777777 55554322 222221
Q ss_pred -ccccccceecCcCcCCcc----c-cCCCCCceeecCCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCCCc
Q 003368 173 -GQLKELKSLGLGGTIPPS----I-YNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNL 246 (825)
Q Consensus 173 -~~l~~L~~L~L~~~~p~~----i-~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 246 (825)
....+++.+.+.+.+... + ..++.|+.+++++|+++ .||+..|..+++|+.|+|.+| ++.+.+.+|.++++|
T Consensus 198 ~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L 275 (329)
T 3sb4_A 198 GLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRL 275 (329)
T ss_dssp TCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred ccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhc
Confidence 134556666666544321 1 13788888999999988 788888889999999999998 887888899999999
Q ss_pred c-EEEeecccccCccccCcCCCCCCcEEEcccccCCCCCCCccccccccccCCCCCEEEc
Q 003368 247 Q-SLEILGNNFFGKLSVNFGDMKSLAYLNVAINNLGSGESDEMSFIHSLANCSNLSFLNL 305 (825)
Q Consensus 247 ~-~L~L~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L 305 (825)
+ .+++.+ ++..+.+.+|.++++|+.++++.|++..+. ..+|.+|++|+.++.
T Consensus 276 ~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~------~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 276 AGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLG------DELFGNGVPSKLIYK 328 (329)
T ss_dssp CEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEEC------TTTTCTTCCCCEEEC
T ss_pred cEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccc------hhhhcCCcchhhhcc
Confidence 9 999988 788888899999999999999999888765 346888999998864
No 387
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.62 E-value=1.5e-14 Score=159.02 Aligned_cols=265 Identities=12% Similarity=0.126 Sum_probs=183.3
Q ss_pred CCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceee
Q 003368 55 LSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELA 134 (825)
Q Consensus 55 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 134 (825)
...++.+.+.+ .++.+.+.+|.+. +|+.++|..| ++.+...+|.++ +|+.+++.. .++.+.+.+|.++++|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 46677777764 4665667788874 7888888776 776777888885 688888885 77767778888888888888
Q ss_pred ccccccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcCCccccCCCCCceeecCCccccccCCch
Q 003368 135 IQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLPPS 214 (825)
Q Consensus 135 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~ 214 (825)
|++|+++.+....|. .++|+.+.|.. .++.+...+|.++++|+.+++..+ ++ .|+..
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~--------------------l~-~I~~~ 243 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN--------------------VS-TIGQE 243 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT--------------------CC-EECTT
T ss_pred cCCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC--------------------cc-Ccccc
Confidence 888888876667777 47888888874 477677777888888888754321 22 34444
Q ss_pred hhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeeccccc-----CccccCcCCCCCCcEEEcccccCCCCCCCccc
Q 003368 215 LGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFF-----GKLSVNFGDMKSLAYLNVAINNLGSGESDEMS 289 (825)
Q Consensus 215 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~ 289 (825)
.+.. .+|+.+.| .|.++.+.+.+|.++++|+.+++.+|.+. .+.+
T Consensus 244 aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~---------------------------- 293 (401)
T 4fdw_A 244 AFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP---------------------------- 293 (401)
T ss_dssp TTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT----------------------------
T ss_pred cccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECH----------------------------
Confidence 4434 67888888 45566666778888888888888777654 2222
Q ss_pred cccccccCCCCCEEEcccccccccCCCCcccccCC-ccccCCCCcCEEEcccCcccccCCccccCCCCCCEEEccccccc
Q 003368 290 FIHSLANCSNLSFLNLVANQFKGALPHSIVSGSIP-SEIGKLVSLYLIEMDHNQFEGKIPEEMSRLQNLQFLNMRHNQLS 368 (825)
Q Consensus 290 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip-~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 368 (825)
.+|.+|++|+.+++.+ .++ .|+ ..|..+++|+.+.+..| ++..-+.+|.++ +|+.+++++|.+.
T Consensus 294 --~aF~~c~~L~~l~l~~-~i~----------~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 294 --YCLEGCPKLARFEIPE-SIR----------ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp --TTTTTCTTCCEECCCT-TCC----------EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred --HHhhCCccCCeEEeCC-ceE----------EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 3455566666666653 243 222 24556667777777444 555556677777 8888888888777
Q ss_pred cccCccccCCC-CCcEEEcccCccc
Q 003368 369 GEIPSSFGNLS-SLVKLILGNNNLS 392 (825)
Q Consensus 369 ~~~p~~~~~l~-~L~~L~Ls~N~l~ 392 (825)
...+..|.+++ +++.|.+..+.+.
T Consensus 359 ~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 359 QVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp BCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred ccccccccCCCCCccEEEeCHHHHH
Confidence 66666777774 6778887777654
No 388
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=99.62 E-value=3.5e-16 Score=167.87 Aligned_cols=135 Identities=17% Similarity=0.162 Sum_probs=96.5
Q ss_pred cccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccc--------------hhHHH--------HHHHHHHhhcCCCCC
Q 003368 644 GFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ--------------GASKS--------FAAECRALRNIRHRN 701 (825)
Q Consensus 644 ~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~--------------~~~~~--------~~~E~~~l~~l~H~n 701 (825)
-|...+.||+|+||.||+|.. .+|+.||||+++.... ..... ..+|...+.++.++.
T Consensus 96 iY~I~~~IG~Gk~a~VY~a~d-~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~g 174 (397)
T 4gyi_A 96 VYSVGSRIGVGKESDIMIVAD-EKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEG 174 (397)
T ss_dssp CSEEEEEEEECSSEEEEEEEC-TTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEecCEeeeCCceEEEEEEC-CCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 378889999999999999998 6899999998753211 01111 234555555554433
Q ss_pred ce--eEeecccccccCCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 003368 702 LV--RVITSCSSIDFQGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQE 779 (825)
Q Consensus 702 iv--~l~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~~ 779 (825)
+. +.+++ ...+|||||++|+.|.++... .....++.|++.++.|||..
T Consensus 175 v~vp~p~~~---------~~~~LVME~i~G~~L~~l~~~------------------~~~~~l~~qll~~l~~lH~~--- 224 (397)
T 4gyi_A 175 FPVPEPIAQ---------SRHTIVMSLVDALPMRQVSSV------------------PDPASLYADLIALILRLAKH--- 224 (397)
T ss_dssp CSCCCEEEE---------ETTEEEEECCSCEEGGGCCCC------------------SCHHHHHHHHHHHHHHHHHT---
T ss_pred CCCCeeeec---------cCceEEEEecCCccHhhhccc------------------HHHHHHHHHHHHHHHHHHHC---
Confidence 32 11111 124799999999888765421 12346789999999999985
Q ss_pred CeeecCCCCCCeeecCCC----------cEEEcccCcccc
Q 003368 780 PTIHCDLKPSNILLDNNL----------TAHVGDFGLARL 809 (825)
Q Consensus 780 ~ivHrdlk~~NILl~~~~----------~~ki~DFGla~~ 809 (825)
+||||||||.|||+++++ .+.|+||+=|--
T Consensus 225 gIVHrDLKp~NILl~~dgd~~d~~~~~~~~~iID~~Q~V~ 264 (397)
T 4gyi_A 225 GLIHGDFNEFNILIREEKDAEDPSSITLTPIIIXFPQMVS 264 (397)
T ss_dssp TEECSCCSTTSEEEEEEECSSCTTSEEEEEEECCCTTCEE
T ss_pred CCcCCCCCHHHEEEeCCCCcccccccccceEEEEeCCccc
Confidence 899999999999998776 389999996654
No 389
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.60 E-value=2.5e-14 Score=157.27 Aligned_cols=203 Identities=13% Similarity=0.122 Sum_probs=158.9
Q ss_pred CCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCCh
Q 003368 43 GLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPS 122 (825)
Q Consensus 43 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 122 (825)
++...-+.+|.+. +|+.+++..| ++.+...+|.+. +|+.+++.. .++.+.+.+|.+|.+|+.++|++|+++.+...
T Consensus 123 ~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~ 198 (401)
T 4fdw_A 123 SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPAS 198 (401)
T ss_dssp TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTT
T ss_pred ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechh
Confidence 4444445577774 7999999877 877888899884 799999996 78878889999999999999999999988788
Q ss_pred hhhcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcCCccccCCCCCceeec
Q 003368 123 EFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSIYNLSLLANFSV 202 (825)
Q Consensus 123 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l 202 (825)
+|. ..+|+.+.|..+ ++.+...+|.++++|+.+++..| ++.+...+|.+ .+|+.+.+.
T Consensus 199 aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp------------------ 256 (401)
T 4fdw_A 199 TFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP------------------ 256 (401)
T ss_dssp TTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE------------------
T ss_pred hEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC------------------
Confidence 888 589999999854 88788899999999999999875 66677777877 678877442
Q ss_pred CCccccccCCchhhhcCCCCcEEEcccccCC-----CCCCccccCCCCccEEEeecccccCccccCcCCCCCCcEEEc
Q 003368 203 PENRLHGSLPPSLGLTLSNLQLFQISNNFFS-----GSFPLAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLAYLNV 275 (825)
Q Consensus 203 ~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 275 (825)
+.++ .++...+..+++|+.+++.+|.+. .+.+.+|.++++|+.++|. +.+..+....|.++++|+.+.+
T Consensus 257 --~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 257 --NGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp --TTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEE
T ss_pred --CCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEE
Confidence 2233 466666668888999998888765 4566789999999999887 4465555555555555555555
No 390
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.59 E-value=2.3e-15 Score=146.09 Aligned_cols=128 Identities=21% Similarity=0.252 Sum_probs=95.0
Q ss_pred CCCCCCCCCEEEcCCCcccccCCccccCCC-CCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccc
Q 003368 51 QIGNLSFLREIHLSNNTIQGKIPGEIGRLF-RLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYN 129 (825)
Q Consensus 51 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 129 (825)
.+.++.+|++|+|++|+++. +|. +..+. +|++|+|++|+|++. ..|..+++|++|+|++|+|++..+..|..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 35567788888888888884 454 44444 888888888888865 57888888888888888888766666788888
Q ss_pred cceeeccccccccccCc--cCCCCCCCCEEEcccCcCcccCCcc----cccccccceecCc
Q 003368 130 LKELAIQENNLTGGIPH--FLGNITSLEAISLAYNSLGGNIPSS----LGQLKELKSLGLG 184 (825)
Q Consensus 130 L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~L~ 184 (825)
|++|+|++|+|+ .+|. .+..+++|+.|++++|.++ .+|.. +..+++|+.|+++
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTE
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCC
Confidence 888888888886 4454 6778888888888888887 44543 6777777777443
No 391
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.57 E-value=1.3e-14 Score=139.83 Aligned_cols=104 Identities=25% Similarity=0.305 Sum_probs=56.6
Q ss_pred EEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeeccccc
Q 003368 60 EIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQENN 139 (825)
Q Consensus 60 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 139 (825)
.|++++|+++ .+|..+. ++|++|+|++|+|++..|..|..+++|++|+|++|+|+++.+..|..+++|++|+|++|+
T Consensus 13 ~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 13 TVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 3444444444 2333332 445555555555555555555555555555555555555555555556666666666666
Q ss_pred cccccCccCCCCCCCCEEEcccCcCcc
Q 003368 140 LTGGIPHFLGNITSLEAISLAYNSLGG 166 (825)
Q Consensus 140 l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 166 (825)
|++..+..|..+++|++|+|++|.++.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 665555556666666666666666653
No 392
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=2.8e-15 Score=145.50 Aligned_cols=129 Identities=22% Similarity=0.253 Sum_probs=113.1
Q ss_pred CcEEEEECCCCCCccccCcCCCCCC-CCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEE
Q 003368 32 RRVTVLDLKSKGLIGSLSPQIGNLS-FLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLY 110 (825)
Q Consensus 32 ~~l~~l~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 110 (825)
.+++.|++++|++.. +|. +..+. +|++|+|++|+|++. ..|+.+++|++|+|++|+|++..+..|..+++|++|+
T Consensus 19 ~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 19 VRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 579999999999985 444 55555 999999999999975 6899999999999999999977667779999999999
Q ss_pred cCCCCCCCCCCh--hhhcccccceeeccccccccccCcc----CCCCCCCCEEEcccCcCcc
Q 003368 111 LGRNKLEGSIPS--EFVSLYNLKELAIQENNLTGGIPHF----LGNITSLEAISLAYNSLGG 166 (825)
Q Consensus 111 Ls~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~----~~~l~~L~~L~Ls~N~l~~ 166 (825)
|++|+|+ .+|. .+..+++|+.|++++|.++ .+|.. +..+++|++||++.|.+..
T Consensus 95 L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 95 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 9999997 4565 8999999999999999998 45654 8999999999999999863
No 393
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=1.5e-17 Score=165.04 Aligned_cols=146 Identities=24% Similarity=0.329 Sum_probs=123.5
Q ss_pred CcEEEEECCCCCCccccCc------CCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCC
Q 003368 32 RRVTVLDLKSKGLIGSLSP------QIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSR 105 (825)
Q Consensus 32 ~~l~~l~L~~n~l~~~~~~------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 105 (825)
.+++.++++.+.+.+.+|+ .+..+++|++|+|++|++++ +| .|..+++|++|+|++|+|+ .+|..+..+++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence 4667777777788777776 88999999999999999996 67 8999999999999999998 67777888899
Q ss_pred CCEEEcCCCCCCCCCChhhhcccccceeeccccccccccC-ccCCCCCCCCEEEcccCcCcccCCcc----------ccc
Q 003368 106 LIGLYLGRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIP-HFLGNITSLEAISLAYNSLGGNIPSS----------LGQ 174 (825)
Q Consensus 106 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------~~~ 174 (825)
|++|+|++|+|++ +| .+..+++|++|+|++|++++..+ ..+..+++|++|++++|.+++.+|.. +..
T Consensus 95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~ 172 (198)
T 1ds9_A 95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR 172 (198)
T ss_dssp CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence 9999999999996 45 68999999999999999986443 57889999999999999998776653 677
Q ss_pred ccccceec
Q 003368 175 LKELKSLG 182 (825)
Q Consensus 175 l~~L~~L~ 182 (825)
+++|+.|+
T Consensus 173 l~~L~~Ld 180 (198)
T 1ds9_A 173 LPNLKKLD 180 (198)
T ss_dssp CSSCSEEC
T ss_pred CCCcEEEC
Confidence 77777774
No 394
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.54 E-value=2.2e-14 Score=138.18 Aligned_cols=107 Identities=25% Similarity=0.278 Sum_probs=97.4
Q ss_pred EEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCC
Q 003368 35 TVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRN 114 (825)
Q Consensus 35 ~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 114 (825)
+.+|+++|++.. +|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 468888888865 676663 89999999999999998999999999999999999999998999999999999999999
Q ss_pred CCCCCCChhhhcccccceeecccccccccc
Q 003368 115 KLEGSIPSEFVSLYNLKELAIQENNLTGGI 144 (825)
Q Consensus 115 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 144 (825)
+|+++.+..|..+++|++|+|++|.++...
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 999888888999999999999999998543
No 395
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.54 E-value=2.8e-14 Score=137.93 Aligned_cols=86 Identities=27% Similarity=0.321 Sum_probs=44.4
Q ss_pred CCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeeccccccccccCccCCCCCCCCEEEc
Q 003368 80 FRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIPHFLGNITSLEAISL 159 (825)
Q Consensus 80 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 159 (825)
++|++|+|++|+|++..|..|..+++|++|+|++|+|+++.+..|.++++|++|+|++|+|++..+..|..+++|++|+|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 34444444444444444444444444444445555554444444455555555555555555444444555666666666
Q ss_pred ccCcCc
Q 003368 160 AYNSLG 165 (825)
Q Consensus 160 s~N~l~ 165 (825)
++|.+.
T Consensus 113 ~~N~~~ 118 (174)
T 2r9u_A 113 YNNPWD 118 (174)
T ss_dssp CSSCBC
T ss_pred CCCCcc
Confidence 666655
No 396
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.54 E-value=3.3e-14 Score=137.35 Aligned_cols=106 Identities=25% Similarity=0.319 Sum_probs=97.3
Q ss_pred EEEECCCCCCccccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCC
Q 003368 35 TVLDLKSKGLIGSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRN 114 (825)
Q Consensus 35 ~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 114 (825)
+.+|+++|++ +.+|..+. ++|++|+|++|+|++..|..|+++++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 5789999998 46777765 89999999999999999999999999999999999999888888999999999999999
Q ss_pred CCCCCCChhhhcccccceeeccccccccc
Q 003368 115 KLEGSIPSEFVSLYNLKELAIQENNLTGG 143 (825)
Q Consensus 115 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 143 (825)
+|+++.+..|..+++|++|+|++|.+...
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 99987777899999999999999999843
No 397
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.54 E-value=1.2e-16 Score=158.48 Aligned_cols=125 Identities=23% Similarity=0.257 Sum_probs=93.2
Q ss_pred CCCCCCCCEEEcCCCcccccCCc------cccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhh
Q 003368 52 IGNLSFLREIHLSNNTIQGKIPG------EIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFV 125 (825)
Q Consensus 52 ~~~l~~L~~L~Ls~N~l~~~~p~------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 125 (825)
+.....++.++++.|.+++.+|. .|..+++|++|+|++|+|++ +| .|..+++|++|+|++|+|+ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 34556777888888888877776 88888888888888888886 55 7788888888888888888 5677777
Q ss_pred cccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccCC-ccccccccccee
Q 003368 126 SLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIP-SSLGQLKELKSL 181 (825)
Q Consensus 126 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L 181 (825)
.+++|++|+|++|++++ +| .+..+++|++|+|++|++++..+ ..+..+++|++|
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L 145 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDL 145 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEE
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEE
Confidence 77888888888888885 34 57778888888888888874322 344445544444
No 398
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.52 E-value=9.8e-13 Score=145.07 Aligned_cols=308 Identities=17% Similarity=0.084 Sum_probs=174.2
Q ss_pred ccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhc
Q 003368 47 SLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVS 126 (825)
Q Consensus 47 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 126 (825)
.-..+|.++++|+.+.+.. .++.+-..+|.++++|+.++|..+ ++.+...+|.++.+|+.+.+..+ +..+...+|.+
T Consensus 62 Ig~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~ 138 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG 138 (394)
T ss_dssp ECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred hHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeec
Confidence 3345788889999999974 477677788999999999999765 66677788999999988877655 55466677877
Q ss_pred ccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcC----CccccCCCCCceeec
Q 003368 127 LYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTI----PPSIYNLSLLANFSV 202 (825)
Q Consensus 127 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~----p~~i~~l~~l~~l~l 202 (825)
+..++....... ......+|.++++|+.+.+..+. ......+|.++.+|+.+.+..++ ...+.++..|+.+.+
T Consensus 139 ~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~ 215 (394)
T 4fs7_A 139 CDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEF 215 (394)
T ss_dssp CCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCC
T ss_pred ccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCCceEeCchhhccccccceeec
Confidence 765544443333 33445678888889999887654 44666778888888888765432 123345555555555
Q ss_pred CCccccccCCchhhhcCCCCcEEEcccccCCCCCCccccCCCCccEEEeecccccCccccCcCCCCCCcEEEcccccCCC
Q 003368 203 PENRLHGSLPPSLGLTLSNLQLFQISNNFFSGSFPLAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLAYLNVAINNLGS 282 (825)
Q Consensus 203 ~~N~l~~~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~ 282 (825)
..+... +....+ ...+|+.+.+..+ ++.+...+|..+.+|+.+.+..+. .......|.....++......+.+.
T Consensus 216 ~~~~~~--i~~~~~-~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i~- 289 (394)
T 4fs7_A 216 PNSLYY--LGDFAL-SKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIVP- 289 (394)
T ss_dssp CTTCCE--ECTTTT-TTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEEC-
T ss_pred CCCceE--eehhhc-ccCCCceEEECCC-ceecccccccccccceeEEcCCCc-ceeeccccccccccceeccCceeec-
Confidence 544332 222222 4456666666533 333444566666666666665543 2233444555555555444333221
Q ss_pred CCCCccccccccccCCCCCEEEcccccccccCCCCcccccCC-ccccCCCCcCEEEcccCcccccCCccccCCCCCCEEE
Q 003368 283 GESDEMSFIHSLANCSNLSFLNLVANQFKGALPHSIVSGSIP-SEIGKLVSLYLIEMDHNQFEGKIPEEMSRLQNLQFLN 361 (825)
Q Consensus 283 ~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ip-~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 361 (825)
...|..+.+|+.+.+..+ ++ .|+ ..|.++.+|+.+++.++ ++..-..+|.++.+|+.++
T Consensus 290 --------~~~F~~~~~L~~i~l~~~-i~----------~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~ 349 (394)
T 4fs7_A 290 --------EKTFYGCSSLTEVKLLDS-VK----------FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNIN 349 (394)
T ss_dssp --------TTTTTTCTTCCEEEECTT-CC----------EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEEC
T ss_pred --------cccccccccccccccccc-cc----------eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEE
Confidence 113344455555544332 22 111 12334444444444322 3333334444444444444
Q ss_pred ccccccccccCccccCCCCCcEEEcc
Q 003368 362 MRHNQLSGEIPSSFGNLSSLVKLILG 387 (825)
Q Consensus 362 Ls~N~l~~~~p~~~~~l~~L~~L~Ls 387 (825)
+..| +...-..+|.++++|+.+++.
T Consensus 350 lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 350 FPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp CCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred ECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 4433 332333344444444444443
No 399
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.49 E-value=9.8e-13 Score=145.07 Aligned_cols=161 Identities=12% Similarity=0.057 Sum_probs=96.8
Q ss_pred cccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeeccccccccccCc
Q 003368 67 TIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQENNLTGGIPH 146 (825)
Q Consensus 67 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 146 (825)
.++.+-..+|.++.+|+.+.|..+ ++.+...+|.+|++|+.++|..+ ++.+...+|.++.+|+.+.+..+ ++.....
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence 355566677888888888888743 77677778888888888888755 66566677888888888777654 4445566
Q ss_pred cCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcCCccccCCCCCceeecCCccccccCCchhhhcCCCCcEEE
Q 003368 147 FLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLPPSLGLTLSNLQLFQ 226 (825)
Q Consensus 147 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~~L~ 226 (825)
+|.+...++...... .......+|.++++|+.+.+ .++. . .++...+....+|+.++
T Consensus 135 aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l-------------------~~~~-~-~I~~~~F~~c~~L~~i~ 191 (394)
T 4fs7_A 135 AFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSL-------------------PDSM-E-TLHNGLFSGCGKLKSIK 191 (394)
T ss_dssp TTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEEC-------------------CTTC-C-EECTTTTTTCTTCCBCC
T ss_pred eeecccccccccCcc--ccccchhhhcccCCCcEEec-------------------CCcc-c-eeccccccCCCCceEEE
Confidence 676665444333222 22233455666666666633 2211 1 23444444556666666
Q ss_pred cccccCCCCCCccccCCCCccEEEeecc
Q 003368 227 ISNNFFSGSFPLAFSNASNLQSLEILGN 254 (825)
Q Consensus 227 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 254 (825)
+..| ++.+...+|.++..|+.+.+..+
T Consensus 192 l~~~-~~~I~~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 192 LPRN-LKIIRDYCFAECILLENMEFPNS 218 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred cCCC-ceEeCchhhccccccceeecCCC
Confidence 6554 44344455666666665555443
No 400
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.38 E-value=8.3e-13 Score=143.03 Aligned_cols=76 Identities=22% Similarity=0.197 Sum_probs=41.7
Q ss_pred cCcCCCCCCCCCEEEcCC-CcccccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhh
Q 003368 48 LSPQIGNLSFLREIHLSN-NTIQGKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEF 124 (825)
Q Consensus 48 ~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 124 (825)
+|. |..+++|++|+|++ |+|+++.|.+|+++++|+.|+|++|+|++..|..|.++++|+.|+|++|+|+++.+..|
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 100 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV 100 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHc
Confidence 455 66666666666664 66665555556666666666655555555555555555555555555555544333333
No 401
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.36 E-value=1.3e-12 Score=141.39 Aligned_cols=104 Identities=17% Similarity=0.163 Sum_probs=94.0
Q ss_pred EEEcCCC-cccccCCccccCCCCCCEEECCC-CcCCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeeccc
Q 003368 60 EIHLSNN-TIQGKIPGEIGRLFRLEALYLSH-NSLVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQE 137 (825)
Q Consensus 60 ~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 137 (825)
.++++++ +|+ .+|. |..+++|++|+|++ |+|++..|..|.++++|+.|+|++|+|+++.|.+|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3466666 788 4787 99999999999996 999999889999999999999999999999999999999999999999
Q ss_pred cccccccCccCCCCCCCCEEEcccCcCcc
Q 003368 138 NNLTGGIPHFLGNITSLEAISLAYNSLGG 166 (825)
Q Consensus 138 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 166 (825)
|+|++..+..|..++ |+.|+|++|.+..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 999988777888777 9999999999974
No 402
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.29 E-value=4e-10 Score=124.11 Aligned_cols=162 Identities=12% Similarity=0.101 Sum_probs=94.4
Q ss_pred ccccCCccccCCC-CCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCC---CCCCCChhhhcccccceeeccccccccc
Q 003368 68 IQGKIPGEIGRLF-RLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNK---LEGSIPSEFVSLYNLKELAIQENNLTGG 143 (825)
Q Consensus 68 l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~---l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 143 (825)
++.+-..+|.+.. .|+.+.+..+ ++.+...+|.+|++|+.+.++.|. ++.+-..+|.++.+|+.+.+..+ ++.+
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 3434455666653 4777777643 555666777777777777776654 55555667777777777776654 4545
Q ss_pred cCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcCCccccCCCCCceeecCCccccccCCchhhhcCCCCc
Q 003368 144 IPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGSLPPSLGLTLSNLQ 223 (825)
Q Consensus 144 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~lp~~~~~~l~~L~ 223 (825)
....|.++.+|+.+.+..+ ++......|..+.+|+.+.+..+ ++ .+....+ .-.+|+
T Consensus 129 ~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--------------------~~-~I~~~aF-~~~~l~ 185 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--------------------VT-AIEERAF-TGTALT 185 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--------------------CC-EECTTTT-TTCCCS
T ss_pred hhhhhhhhcccccccccce-eeeecccceecccccccccccce--------------------ee-Eeccccc-ccccee
Confidence 5667777777777777643 33355566667777766643221 11 2223333 234566
Q ss_pred EEEcccccCCCCCCccccCCCCccEEEeeccc
Q 003368 224 LFQISNNFFSGSFPLAFSNASNLQSLEILGNN 255 (825)
Q Consensus 224 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 255 (825)
.+.+..+. +.+...+|.++.+++......+.
T Consensus 186 ~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~ 216 (394)
T 4gt6_A 186 QIHIPAKV-TRIGTNAFSECFALSTITSDSES 216 (394)
T ss_dssp EEEECTTC-CEECTTTTTTCTTCCEEEECCSS
T ss_pred EEEECCcc-cccccchhhhccccceecccccc
Confidence 66655432 22344566666666666654443
No 403
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.24 E-value=8.8e-14 Score=151.45 Aligned_cols=110 Identities=22% Similarity=0.185 Sum_probs=48.5
Q ss_pred CCCCEEEcCCCcccccCCccccCC-----CCCCEEECCCCcCCCCCCcCC-CCCCCCCEEEcCCCCCCCCCChhhh----
Q 003368 56 SFLREIHLSNNTIQGKIPGEIGRL-----FRLEALYLSHNSLVGEIPGNL-SYCSRLIGLYLGRNKLEGSIPSEFV---- 125 (825)
Q Consensus 56 ~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~---- 125 (825)
+.|++|+|++|.|+......|... .+|++|||++|.|+......+ ..+++|+.|+|++|+|+......+.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 345555555555553322222221 455555555555543222222 1234455555555555432222221
Q ss_pred -cccccceeeccccccccc----cCccCCCCCCCCEEEcccCcCc
Q 003368 126 -SLYNLKELAIQENNLTGG----IPHFLGNITSLEAISLAYNSLG 165 (825)
Q Consensus 126 -~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~ 165 (825)
..++|++|+|++|.|+.. ++..+..+++|++|+|++|+|+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence 234455555555555421 2222344455555555555554
No 404
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=99.20 E-value=3e-11 Score=125.16 Aligned_cols=146 Identities=14% Similarity=0.062 Sum_probs=110.3
Q ss_pred hcccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCC-CCCceeEeecccccccCCCCe
Q 003368 641 ATDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIR-HRNLVRVITSCSSIDFQGNDF 719 (825)
Q Consensus 641 ~~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~l~~~~~~~~~~~~~~ 719 (825)
..++|......+.|+.+.||++.. .|..+++|+...........+.+|+++++.+. |..+.++++++. ..+.
T Consensus 12 ~l~~~~~~~~~~g~s~~~v~~~~~--~~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~-----~~~~ 84 (263)
T 3tm0_A 12 LIEKYRCVKDTEGMSPAKVYKLVG--ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFER-----HDGW 84 (263)
T ss_dssp HHTTSEEEECCSCCSSSEEEEEEC--SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEE-----ETTE
T ss_pred HhccceeEeeccCCCCCeEEEEEC--CCCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEe-----cCCc
Confidence 345677777888889999999985 46789999987533233346889999999885 667778888753 2457
Q ss_pred eeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcC----------------------
Q 003368 720 KALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHC---------------------- 777 (825)
Q Consensus 720 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~---------------------- 777 (825)
.|+||||++|.++.+.+.. ..+...++.+++++++.||+..
T Consensus 85 ~~lv~e~i~G~~l~~~~~~-----------------~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (263)
T 3tm0_A 85 SNLLMSEADGVLCSEEYED-----------------EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLN 147 (263)
T ss_dssp EEEEEECCSSEEHHHHCCT-----------------TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHH
T ss_pred eEEEEEecCCeehhhccCC-----------------cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHh
Confidence 8999999999999776411 0123467889999999999810
Q ss_pred ----------------------------------CCCeeecCCCCCCeeecCCCcEEEcccCccccc
Q 003368 778 ----------------------------------QEPTIHCDLKPSNILLDNNLTAHVGDFGLARLR 810 (825)
Q Consensus 778 ----------------------------------~~~ivHrdlk~~NILl~~~~~~ki~DFGla~~~ 810 (825)
.+.++|+|+++.||+++++..+.|.||+.|...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~~g 214 (263)
T 3tm0_A 148 NDLADVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRA 214 (263)
T ss_dssp TTCSCCSGGGGSTTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCEEE
T ss_pred ccccccccccccccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcccC
Confidence 134899999999999987666789999987653
No 405
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.20 E-value=1.2e-09 Score=120.26 Aligned_cols=131 Identities=12% Similarity=0.144 Sum_probs=101.6
Q ss_pred CcCCCCCC-CCCEEEcCCCcccccCCccccCCCCCCEEECCCCc---CCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhh
Q 003368 49 SPQIGNLS-FLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNS---LVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEF 124 (825)
Q Consensus 49 ~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~---l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 124 (825)
..+|.+.. .|+.+.+..+ ++.+-..+|.++++|+.+.++.|. ++.+...+|.+|.+|+.+.+..+ ++.+...+|
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 34677774 5999999754 776778899999999999998874 77677888999999999888765 665777889
Q ss_pred hcccccceeeccccccccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCc
Q 003368 125 VSLYNLKELAIQENNLTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLG 184 (825)
Q Consensus 125 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 184 (825)
.++.+|+.+.+..+ ++.+....|.+..+|+.+.+..+ ++..-..+|.. .+|+.+.+.
T Consensus 134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip 190 (394)
T 4gt6_A 134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIP 190 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEEC
T ss_pred hhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEEC
Confidence 99999999999754 45466788999999999999765 55455566654 567777543
No 406
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.18 E-value=4.2e-13 Score=146.05 Aligned_cols=160 Identities=18% Similarity=0.195 Sum_probs=119.2
Q ss_pred CcEEEEECCCCCCccccCcCCCC-----CCCCCEEEcCCCcccccCCccc-cCCCCCCEEECCCCcCCCCCCcCC-----
Q 003368 32 RRVTVLDLKSKGLIGSLSPQIGN-----LSFLREIHLSNNTIQGKIPGEI-GRLFRLEALYLSHNSLVGEIPGNL----- 100 (825)
Q Consensus 32 ~~l~~l~L~~n~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~----- 100 (825)
..++.|+|++|.+.......+.. .++|++|+|++|.|+......+ ..+.+|+.|+|++|.|+......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 46899999999997654443332 3799999999999975433333 346789999999999986544444
Q ss_pred CCCCCCCEEEcCCCCCCC----CCChhhhcccccceeeccccccccc----cCccCCCCCCCCEEEcccCcCcccC----
Q 003368 101 SYCSRLIGLYLGRNKLEG----SIPSEFVSLYNLKELAIQENNLTGG----IPHFLGNITSLEAISLAYNSLGGNI---- 168 (825)
Q Consensus 101 ~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~---- 168 (825)
...++|++|+|++|.|+. .++.++..+++|++|+|++|.|+.. ++..+...++|+.|+|++|.|+...
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 357899999999999975 2445567889999999999999853 2566778889999999999998532
Q ss_pred CcccccccccceecCcCcCCccccCCCCCceeecCCcccccc
Q 003368 169 PSSLGQLKELKSLGLGGTIPPSIYNLSLLANFSVPENRLHGS 210 (825)
Q Consensus 169 p~~~~~l~~L~~L~L~~~~p~~i~~l~~l~~l~l~~N~l~~~ 210 (825)
+..+...++|++| +|++|.++..
T Consensus 232 ~~~L~~~~~L~~L-------------------~Ls~N~i~~~ 254 (372)
T 3un9_A 232 ARAAREHPSLELL-------------------HLYFNELSSE 254 (372)
T ss_dssp HHHHHHCSSCCEE-------------------ECTTSSCCHH
T ss_pred HHHHHhCCCCCEE-------------------eccCCCCCHH
Confidence 2333344555555 7788887643
No 407
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=99.08 E-value=1.4e-10 Score=119.82 Aligned_cols=141 Identities=16% Similarity=0.090 Sum_probs=98.4
Q ss_pred cccccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCc--eeEeecccccccCCCCe
Q 003368 642 TDGFSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNL--VRVITSCSSIDFQGNDF 719 (825)
Q Consensus 642 ~~~f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~ni--v~l~~~~~~~~~~~~~~ 719 (825)
..++....+.+.|..+.||++.. .+|+.++||+.... ....+.+|+++++.+++..+ .++++++. .++.
T Consensus 19 ~~~~~~~~~~~gg~~~~v~~~~~-~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~-----~~~~ 89 (264)
T 1nd4_A 19 LFGYDWAQQTIGCSDAAVFRLSA-QGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVT-----EAGR 89 (264)
T ss_dssp TTTCEEEECSCTTSSCEEEEEEC-TTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEE-----CSSC
T ss_pred cCCCceEecccCCCCceEEEEec-CCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEecc-----CCCC
Confidence 33444433334566799999976 56788999987643 22457789999998875554 45777632 2455
Q ss_pred eeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcC----------------------
Q 003368 720 KALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHC---------------------- 777 (825)
Q Consensus 720 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~---------------------- 777 (825)
.++||||++|.++. ... . ....++.++++.++.||...
T Consensus 90 ~~~v~e~i~G~~l~--~~~---------------~---~~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (264)
T 1nd4_A 90 DWLLLGEVPGQDLL--SSH---------------L---APAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRME 149 (264)
T ss_dssp EEEEEECCSSEETT--TSC---------------C---CHHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHH
T ss_pred CEEEEEecCCcccC--cCc---------------C---CHhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHh
Confidence 79999999998884 210 0 11256777778888888642
Q ss_pred ---------------------------------CCCeeecCCCCCCeeecCCCcEEEcccCcccccc
Q 003368 778 ---------------------------------QEPTIHCDLKPSNILLDNNLTAHVGDFGLARLRQ 811 (825)
Q Consensus 778 ---------------------------------~~~ivHrdlk~~NILl~~~~~~ki~DFGla~~~~ 811 (825)
.+.++|+|++|.||+++++..++|.|||.|....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~g~ 216 (264)
T 1nd4_A 150 AGLVDQDDLDEEHQGLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGVAD 216 (264)
T ss_dssp TTCCCTTSCCGGGTTCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEEEE
T ss_pred cCCccchhhhhhccCccHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhcccCC
Confidence 1129999999999999887667899999987643
No 408
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=98.94 E-value=3.3e-09 Score=115.16 Aligned_cols=146 Identities=13% Similarity=0.174 Sum_probs=105.2
Q ss_pred ccceeccCCeeEEEEEEEcCCCeEEEEEEee--cccc-hhHHHHHHHHHHhhcCC--CCCceeEeecccccccCCCCeee
Q 003368 647 STHLIGIGSFGSVYKGTFDRDGTIVAIKVLN--LQLQ-GASKSFAAECRALRNIR--HRNLVRVITSCSSIDFQGNDFKA 721 (825)
Q Consensus 647 ~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~--~~~~-~~~~~~~~E~~~l~~l~--H~niv~l~~~~~~~~~~~~~~~~ 721 (825)
..+.++.|.++.||+... .+..+++|+.. .... .....+.+|+++++.++ +..+.+++++|.... ..+..+
T Consensus 42 ~~~~l~~G~sn~~y~v~~--~~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~--~~g~~~ 117 (359)
T 3dxp_A 42 SVEQFKGGQSNPTFKLVT--PGQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDES--VIGRAF 117 (359)
T ss_dssp EEEECCC-CCSCEEEEEC--SSCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTT--TTSSCE
T ss_pred eEEEcCCcccceEEEEEE--CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCC--ccCCeE
Confidence 457789999999999986 34678888876 3321 22346788999999887 455778888764321 113468
Q ss_pred EEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcC------------------------
Q 003368 722 LVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHC------------------------ 777 (825)
Q Consensus 722 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~------------------------ 777 (825)
+||||++|..+.+.. ...++..++..++.++++.|+.||...
T Consensus 118 ~vme~v~G~~l~~~~--------------~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (359)
T 3dxp_A 118 YIMEFVSGRVLWDQS--------------LPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWT 183 (359)
T ss_dssp EEEECCCCBCCCCTT--------------CTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHH
T ss_pred EEEEecCCeecCCCc--------------cccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHH
Confidence 999999998775321 123677788899999999999999731
Q ss_pred -------------------------------CCCeeecCCCCCCeeecCCCc--EEEcccCccccc
Q 003368 778 -------------------------------QEPTIHCDLKPSNILLDNNLT--AHVGDFGLARLR 810 (825)
Q Consensus 778 -------------------------------~~~ivHrdlk~~NILl~~~~~--~ki~DFGla~~~ 810 (825)
.+.+||+|+++.||+++.++. +.|.||+.|..-
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~g 249 (359)
T 3dxp_A 184 KQYKLSETESIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTLG 249 (359)
T ss_dssp HHHHHHCCSCCHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEEE
T ss_pred HHHHhcCCcCChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECccccccC
Confidence 246899999999999997753 689999988753
No 409
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.90 E-value=6.1e-08 Score=105.92 Aligned_cols=95 Identities=16% Similarity=0.144 Sum_probs=57.6
Q ss_pred ccCCCCcCEEEcccCcccccCCccccCCCCCCEEEccccccccccCccccCCCCCcEEEcccCccccccCCCCCCCCccc
Q 003368 327 IGKLVSLYLIEMDHNQFEGKIPEEMSRLQNLQFLNMRHNQLSGEIPSSFGNLSSLVKLILGNNNLSGVIPSSLGNLKQLA 406 (825)
Q Consensus 327 l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 406 (825)
+.++.+|+.+.+..+ +.......|.++.+|+.+.+.++.+...-...|.++.+|+.+.|..+ ++.+-..+|.++++|+
T Consensus 259 F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 336 (379)
T 4h09_A 259 LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALS 336 (379)
T ss_dssp TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred cceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence 444555555555432 33344456677777777777777776555667777777777777644 5544456777777777
Q ss_pred eeecCCCCCccccchhhhc
Q 003368 407 LLHLFQNDLSGAIPEEIFN 425 (825)
Q Consensus 407 ~L~L~~N~l~g~ip~~~~~ 425 (825)
.+.+..+ ++ .|....|.
T Consensus 337 ~i~ip~~-v~-~I~~~aF~ 353 (379)
T 4h09_A 337 TISYPKS-IT-LIESGAFE 353 (379)
T ss_dssp CCCCCTT-CC-EECTTTTT
T ss_pred EEEECCc-cC-EEchhHhh
Confidence 7776544 43 44444443
No 410
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.86 E-value=1.9e-07 Score=101.98 Aligned_cols=147 Identities=20% Similarity=0.216 Sum_probs=86.9
Q ss_pred ccccCCCCccEEEeecccccCccccCcCCCCCCcEEEcccccCCCCCCCccccccccccCCCCCEEEcccccccccCCCC
Q 003368 238 LAFSNASNLQSLEILGNNFFGKLSVNFGDMKSLAYLNVAINNLGSGESDEMSFIHSLANCSNLSFLNLVANQFKGALPHS 317 (825)
Q Consensus 238 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 317 (825)
.+|..+.+|+.+.+..+ +..+....|.+...|+.+.+..+ +..+. ..+|.++.+|+.+.+..+ ++
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~------~~aF~~~~~l~~i~l~~~-i~------ 275 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIG------SFLLQNCTALKTLNFYAK-VK------ 275 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEEC------TTTTTTCTTCCEEEECCC-CS------
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeC------ccccceeehhcccccccc-ce------
Confidence 34444445555544332 33333344445555555544332 22211 224556666776666443 32
Q ss_pred cccccCC-ccccCCCCcCEEEcccCcccccCCccccCCCCCCEEEccccccccccCccccCCCCCcEEEcccCccccccC
Q 003368 318 IVSGSIP-SEIGKLVSLYLIEMDHNQFEGKIPEEMSRLQNLQFLNMRHNQLSGEIPSSFGNLSSLVKLILGNNNLSGVIP 396 (825)
Q Consensus 318 ~~~~~ip-~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 396 (825)
.++ ..|..+.+|+.+.+.++.++..-..+|.++.+|+.++|..+ +...-..+|.++++|+.+.+..+ ++.+-.
T Consensus 276 ----~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~ 349 (379)
T 4h09_A 276 ----TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIES 349 (379)
T ss_dssp ----EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred ----eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEch
Confidence 222 24566778888888777777666678888888888888755 65455667888888888888655 554555
Q ss_pred CCCCCCCcc
Q 003368 397 SSLGNLKQL 405 (825)
Q Consensus 397 ~~~~~l~~L 405 (825)
.+|.++..+
T Consensus 350 ~aF~~c~~~ 358 (379)
T 4h09_A 350 GAFEGSSIT 358 (379)
T ss_dssp TTTTTSSCC
T ss_pred hHhhCCCCC
Confidence 677776533
No 411
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.86 E-value=6.6e-11 Score=120.98 Aligned_cols=163 Identities=20% Similarity=0.165 Sum_probs=91.8
Q ss_pred CCCceeeceeecCCCCcEEEEECCC---CCCccccCc-CCCCCCCCCEEEcCCCcccccCCc-cccCCCCCCE--EECCC
Q 003368 17 HHFCDWEGITCSPRHRRVTVLDLKS---KGLIGSLSP-QIGNLSFLREIHLSNNTIQGKIPG-EIGRLFRLEA--LYLSH 89 (825)
Q Consensus 17 ~~~C~~~g~~c~~~~~~l~~l~L~~---n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~--L~Ls~ 89 (825)
...|+|.|+.|++...+|+.+-..+ ..+.+.+++ .+..++. .|...+|.-++.++- .|...+.|.. ++++.
T Consensus 75 ~~l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~--~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~ 152 (267)
T 3rw6_A 75 SALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKL--IMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVL 152 (267)
T ss_dssp HHHHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHH--HHHHTEETTTTEEECTTGGGCHHHHHTTCCCCT
T ss_pred HHHHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHH--HHHhccchhccccCHHHcCCCcchhhcCccccC
Confidence 3568999999998776776654433 112222221 1111111 111112211111111 1333344444 56666
Q ss_pred CcCC---CCCCcCCCCCCCCCEEEcCCCCCCC--CCChhhhcccccceeeccccccccccCccCCCCC--CCCEEEcccC
Q 003368 90 NSLV---GEIPGNLSYCSRLIGLYLGRNKLEG--SIPSEFVSLYNLKELAIQENNLTGGIPHFLGNIT--SLEAISLAYN 162 (825)
Q Consensus 90 N~l~---~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~--~L~~L~Ls~N 162 (825)
|+.. ...+....++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|+.|+|++|
T Consensus 153 N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~N 230 (267)
T 3rw6_A 153 NRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGN 230 (267)
T ss_dssp TSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTS
T ss_pred CHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCC
Confidence 6433 1122222456777888888888876 3456677788888888888888755 2344444 7888888888
Q ss_pred cCcccCC-------cccccccccceecC
Q 003368 163 SLGGNIP-------SSLGQLKELKSLGL 183 (825)
Q Consensus 163 ~l~~~~p-------~~~~~l~~L~~L~L 183 (825)
.+++.+| ..+..+++|+.||=
T Consensus 231 pl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 231 SLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp TTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred cCccccCcchhHHHHHHHHCcccCeECC
Confidence 8877655 23667888888753
No 412
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.76 E-value=1.9e-09 Score=116.10 Aligned_cols=131 Identities=11% Similarity=0.154 Sum_probs=73.1
Q ss_pred CcEEEEECCCCCCcc-c-------cCcCCCCCCCCCEEEcCCCccc---------ccCCccccCCCCCCEEECCCCc-CC
Q 003368 32 RRVTVLDLKSKGLIG-S-------LSPQIGNLSFLREIHLSNNTIQ---------GKIPGEIGRLFRLEALYLSHNS-LV 93 (825)
Q Consensus 32 ~~l~~l~L~~n~l~~-~-------~~~~~~~l~~L~~L~Ls~N~l~---------~~~p~~~~~l~~L~~L~Ls~N~-l~ 93 (825)
.+|+.|.+...+..+ . +..++..+++|+.|.+..+... +.++..+..+++|+.|+|++|. +.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 467778777655442 1 2344566788999988765432 1233445667778888887763 22
Q ss_pred CCCCcCCCCCCCCCEEEcCCCCCCCCCChhhh--cccccceeeccc--cccccc-----cCccC--CCCCCCCEEEcccC
Q 003368 94 GEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFV--SLYNLKELAIQE--NNLTGG-----IPHFL--GNITSLEAISLAYN 162 (825)
Q Consensus 94 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~L~~--N~l~~~-----~p~~~--~~l~~L~~L~Ls~N 162 (825)
++. +. +++|+.|+|..+.+....-..+. .+++|+.|+|+. |...+. +...+ ..+++|++|+|++|
T Consensus 187 --l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 187 --IGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp --CCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred --ecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence 222 33 66777777777776543333343 567777777643 221111 01112 23566666666666
Q ss_pred cCcc
Q 003368 163 SLGG 166 (825)
Q Consensus 163 ~l~~ 166 (825)
.++.
T Consensus 263 ~i~~ 266 (362)
T 2ra8_A 263 EEQN 266 (362)
T ss_dssp TTHH
T ss_pred CCch
Confidence 6653
No 413
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.65 E-value=4.8e-09 Score=113.05 Aligned_cols=102 Identities=20% Similarity=0.211 Sum_probs=47.4
Q ss_pred CCCCEEEcCCCcccc-c-------CCccccCCCCCCEEECCCCcCCC---------CCCcCCCCCCCCCEEEcCCCCCCC
Q 003368 56 SFLREIHLSNNTIQG-K-------IPGEIGRLFRLEALYLSHNSLVG---------EIPGNLSYCSRLIGLYLGRNKLEG 118 (825)
Q Consensus 56 ~~L~~L~Ls~N~l~~-~-------~p~~~~~l~~L~~L~Ls~N~l~~---------~~p~~~~~l~~L~~L~Ls~N~l~~ 118 (825)
..++.|.+......+ . +..++..+++|+.|.+..+.... .++..+..+++|+.|+|++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 456778777665442 1 12335566788888776543210 12222334455555555554211
Q ss_pred CCChhhhcccccceeeccccccccccCccCC--CCCCCCEEEcc
Q 003368 119 SIPSEFVSLYNLKELAIQENNLTGGIPHFLG--NITSLEAISLA 160 (825)
Q Consensus 119 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~Ls 160 (825)
.++. + .+++|+.|+|..+.++...-..+. .+++|+.|+|+
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 1111 2 244555555555544322222222 34555555543
No 414
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.56 E-value=2.9e-09 Score=103.54 Aligned_cols=119 Identities=21% Similarity=0.201 Sum_probs=82.8
Q ss_pred ccCcCCCCCCCCCEEEcCCC-cccc----cCCccccCCCCCCEEECCCCcCCCC----CCcCCCCCCCCCEEEcCCCCCC
Q 003368 47 SLSPQIGNLSFLREIHLSNN-TIQG----KIPGEIGRLFRLEALYLSHNSLVGE----IPGNLSYCSRLIGLYLGRNKLE 117 (825)
Q Consensus 47 ~~~~~~~~l~~L~~L~Ls~N-~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~ 117 (825)
.+...+...+.|++|+|++| .|.. .+...+...++|++|+|++|.|... +...+...++|++|+|++|.|.
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 34445667788888888888 7763 2345566677888888888888743 2334555677888888888887
Q ss_pred CC----CChhhhcccccceeec--cccccccc----cCccCCCCCCCCEEEcccCcCc
Q 003368 118 GS----IPSEFVSLYNLKELAI--QENNLTGG----IPHFLGNITSLEAISLAYNSLG 165 (825)
Q Consensus 118 ~~----~p~~~~~l~~L~~L~L--~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~ 165 (825)
.. +..++...++|++|+| ++|.|+.. +...+...++|+.|+|++|.+.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 42 3455666778888888 77888643 2334555678888888888875
No 415
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.53 E-value=9.2e-09 Score=105.05 Aligned_cols=105 Identities=20% Similarity=0.177 Sum_probs=80.2
Q ss_pred CCCCCCCCE--EEcCCCccc---ccCCccccCCCCCCEEECCCCcCCC--CCCcCCCCCCCCCEEEcCCCCCCCCCChhh
Q 003368 52 IGNLSFLRE--IHLSNNTIQ---GKIPGEIGRLFRLEALYLSHNSLVG--EIPGNLSYCSRLIGLYLGRNKLEGSIPSEF 124 (825)
Q Consensus 52 ~~~l~~L~~--L~Ls~N~l~---~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 124 (825)
+...+.|+. ++++.|+.. +.++-...++++|+.|+||+|+|++ .+|..+..+++|+.|+|++|+|++. ..+
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh
Confidence 445555665 778888543 2233333568899999999999998 4567778999999999999999975 445
Q ss_pred hccc--ccceeeccccccccccCc-------cCCCCCCCCEEE
Q 003368 125 VSLY--NLKELAIQENNLTGGIPH-------FLGNITSLEAIS 158 (825)
Q Consensus 125 ~~l~--~L~~L~L~~N~l~~~~p~-------~~~~l~~L~~L~ 158 (825)
..+. +|++|+|++|.+++..|. .+..+++|+.||
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 5555 899999999999976663 477889999987
No 416
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=98.46 E-value=7.8e-07 Score=94.57 Aligned_cols=137 Identities=18% Similarity=0.175 Sum_probs=97.4
Q ss_pred ccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCC----CCceeEeecccccccCCCCee
Q 003368 645 FSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRH----RNLVRVITSCSSIDFQGNDFK 720 (825)
Q Consensus 645 f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H----~niv~l~~~~~~~~~~~~~~~ 720 (825)
....+.++.|....||+. |..+++|+.... .....+.+|.++++.+.+ ..+.+++++ +..
T Consensus 39 i~~v~~l~~G~~n~vy~v-----g~~~vlR~~~~~--~~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~---------~~~ 102 (320)
T 3r70_A 39 INELRYLSSGDDSDTFLC-----NEQYVVKVPKRD--SVRISQKRELELYRFLENCKLSYQIPAVVYQ---------SDR 102 (320)
T ss_dssp CSCEEEEEECSSEEEEEE-----TTTEEEEEESSH--HHHHHHHHHHHHHHHHTTSCCSSBCCCEEEE---------CSS
T ss_pred eEEEEeCCCCCCceEEEE-----CCEEEEEeCCcH--HHHHHHHHHHHHHHHHHhcCCCCCcceEEec---------CCc
Confidence 455678999999999998 456888876432 223568899999888876 123344433 235
Q ss_pred eEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcCC----------------------
Q 003368 721 ALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHCQ---------------------- 778 (825)
Q Consensus 721 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~~---------------------- 778 (825)
++||||++|.++.+... ..++..++..++.++++.++.||....
T Consensus 103 ~lvme~i~G~~l~~~~~--------------~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (320)
T 3r70_A 103 FNIMKYIKGERITYEQY--------------HKLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQDK 168 (320)
T ss_dssp CEEEECCCCBCCCHHHH--------------TTSCHHHHHHHHHHHHHHHHHHHHSCCCTTSHHHHTTBCCHHHHHHHHH
T ss_pred EEEEeecCCcccccccc--------------ccCCHHHHHHHHHHHHHHHHHHhCCCcccCCCccccccccchHHHHHHH
Confidence 89999999988763221 134555666777777777777774321
Q ss_pred --------------------------------------CCeeecCCCCCCeeecCCCcEEEcccCcccccc
Q 003368 779 --------------------------------------EPTIHCDLKPSNILLDNNLTAHVGDFGLARLRQ 811 (825)
Q Consensus 779 --------------------------------------~~ivHrdlk~~NILl~~~~~~ki~DFGla~~~~ 811 (825)
+.++|+|++|.||+++.+..+.|.||+.|....
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~D~~~~N~l~~~~~~~~~iD~~~~~~~~ 239 (320)
T 3r70_A 169 KLLISILEKEQLLTDEMLEHIETIYENILSNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNVGD 239 (320)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCSGGGEEEETTEEEEECCCTTCEEEC
T ss_pred HHHHHHHhhcccccccchHHHHHHHHHHHhccccccCCceeeECCCCCCcEEEECCceEEEECCcccccCC
Confidence 235999999999999997667999999987643
No 417
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=98.44 E-value=3.6e-07 Score=96.48 Aligned_cols=140 Identities=21% Similarity=0.211 Sum_probs=97.1
Q ss_pred cceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCC-CCC--ceeEeecccccccCCCCeeeEEE
Q 003368 648 THLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIR-HRN--LVRVITSCSSIDFQGNDFKALVY 724 (825)
Q Consensus 648 ~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~-H~n--iv~l~~~~~~~~~~~~~~~~lv~ 724 (825)
.+.++.|.+..||+.. ..+++|+.... .....+.+|+++++.+. +.. +.+.+..+.. -......|+||
T Consensus 25 i~~~~~G~~n~v~~v~-----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~--~~~~~~~~~vm 95 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN-----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMP--SETYQMSFAGF 95 (304)
T ss_dssp CCEEEECSSEEEEEST-----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCC--CSSCSCSCEEE
T ss_pred eEecCCCCcceEEEEC-----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCC--CCCCCcceEEE
Confidence 4678999999999864 35888885432 33467889999998874 333 3344443211 01112348999
Q ss_pred EccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhc----------------------------
Q 003368 725 QYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHH---------------------------- 776 (825)
Q Consensus 725 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~---------------------------- 776 (825)
||++|.++.+.. ...++..++..++.++++.++.||..
T Consensus 96 ~~i~G~~l~~~~--------------~~~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (304)
T 3sg8_A 96 TKIKGVPLTPLL--------------LNNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLL 161 (304)
T ss_dssp ECCCCEECCHHH--------------HHTSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHH
T ss_pred cccCCeECCccc--------------cccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHh
Confidence 999998775422 12456667778888888888888851
Q ss_pred ---------------------------CCCCeeecCCCCCCeeecC--CCcEEEcccCccccc
Q 003368 777 ---------------------------CQEPTIHCDLKPSNILLDN--NLTAHVGDFGLARLR 810 (825)
Q Consensus 777 ---------------------------~~~~ivHrdlk~~NILl~~--~~~~ki~DFGla~~~ 810 (825)
..+.++|+|+++.||++++ ...+.|.||+.+...
T Consensus 162 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~ 224 (304)
T 3sg8_A 162 SRELKGPQMKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAIS 224 (304)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEE
T ss_pred cccCCcccHHHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccC
Confidence 1135799999999999998 456899999998764
No 418
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=98.42 E-value=1.1e-06 Score=91.65 Aligned_cols=152 Identities=20% Similarity=0.132 Sum_probs=95.4
Q ss_pred cccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCC---CceeEeecccccccCCCCeeeE
Q 003368 646 SSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHR---NLVRVITSCSSIDFQGNDFKAL 722 (825)
Q Consensus 646 ~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~---niv~l~~~~~~~~~~~~~~~~l 722 (825)
...+.++.|.++.||++.. .+|+.++||+...........|.+|++.++.+++. .+.+++++. ..++
T Consensus 18 ~~~~~l~gG~~n~vy~v~~-~dG~~~vvK~~~~~~~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~---------~~~l 87 (288)
T 3d1u_A 18 AAVAERGHSHRWHLYRVEL-ADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD---------DRTL 87 (288)
T ss_dssp EEEEEEEEETTEEEEEEEE-TTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE---------TTEE
T ss_pred cceeeeCCcchhheEEEEe-CCCCeEEEEecCCCCcchhHHHHHHHHHHHHHHhcCCCCcCeEEEec---------CcEE
Confidence 4567899999999999988 67899999997543333346789999999999875 477777652 2589
Q ss_pred EEEccCCCChhh-----------hccCCCCCCCcccch---------hcccCCHHHHH---HH-----------------
Q 003368 723 VYQYMPNGSLEN-----------WLHPDAIPQTDEEND---------EIRNLTLLERI---SI----------------- 762 (825)
Q Consensus 723 v~e~~~~gsL~~-----------~l~~~~~~~~~~~~~---------~~~~l~~~~~~---~i----------------- 762 (825)
||||++++.+.. .||....+...-... ..-.-+|.+.. ++
T Consensus 88 vme~l~g~~~~~~~~~~lg~~LA~LH~~~~~~fG~~~~~~~G~~~q~~~w~~~W~~f~~~~rl~~~l~~a~~~~~~~~~~ 167 (288)
T 3d1u_A 88 AMEWVDERPPTPEAAERFGHQLAAMHLAGAESFGATWDGYIGPLPMDNTPRSTWPEFYAEQRILPYLRRAADRGALTPGD 167 (288)
T ss_dssp EEECCCCCCCCHHHHHHHHHHHHHHHHTCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHHTHHHHHHHHHTTSSCHHH
T ss_pred EEEecccCCCChHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 999999987531 123221110000000 00012444321 00
Q ss_pred HHHHHHHHHHHH----hcCCCCeeecCCCCCCeeecCCCcEEEcccCcccc
Q 003368 763 AIDVASAVDYLH----HHCQEPTIHCDLKPSNILLDNNLTAHVGDFGLARL 809 (825)
Q Consensus 763 ~~~va~~l~yLH----~~~~~~ivHrdlk~~NILl~~~~~~ki~DFGla~~ 809 (825)
...+.+.++.+. ....+.++|+|+.+.||+++.+ .+.|.|| .+..
T Consensus 168 ~~~~~~l~~~l~~~l~~~~~~~l~HgD~~~~N~l~~~~-~~~~iD~-~~~~ 216 (288)
T 3d1u_A 168 VRLVEKVLDALDHLAGDPEPPARIHGDLWNGNVLWQDD-GAVVIDP-AAHG 216 (288)
T ss_dssp HHHHHHHHHTHHHHTCSCCCCEEECSCCSGGGEEEETT-EEEECSC-CCEE
T ss_pred HHHHHHHHHHHHHHhcCCCCCcceECCCCcCcEEEeCC-CeEEEcC-CcCC
Confidence 111122233332 2234679999999999999884 5889999 6554
No 419
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.32 E-value=8.2e-08 Score=93.23 Aligned_cols=112 Identities=11% Similarity=0.144 Sum_probs=90.6
Q ss_pred CCCcEEEEECCCC-CCccc----cCcCCCCCCCCCEEEcCCCccccc----CCccccCCCCCCEEECCCCcCCCC----C
Q 003368 30 RHRRVTVLDLKSK-GLIGS----LSPQIGNLSFLREIHLSNNTIQGK----IPGEIGRLFRLEALYLSHNSLVGE----I 96 (825)
Q Consensus 30 ~~~~l~~l~L~~n-~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~ 96 (825)
....++.|+|++| .+... +...+...++|++|+|++|+|... +...+...+.|++|+|++|.|... +
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 3468999999999 88643 556677789999999999999742 345566678999999999999854 4
Q ss_pred CcCCCCCCCCCEEEc--CCCCCCCC----CChhhhcccccceeeccccccc
Q 003368 97 PGNLSYCSRLIGLYL--GRNKLEGS----IPSEFVSLYNLKELAIQENNLT 141 (825)
Q Consensus 97 p~~~~~l~~L~~L~L--s~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~ 141 (825)
...+...++|++|+| ++|.|... +...+...++|++|+|++|.+.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 567788899999999 88999853 3445666789999999999986
No 420
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=98.28 E-value=4.3e-06 Score=88.16 Aligned_cols=139 Identities=16% Similarity=0.111 Sum_probs=90.7
Q ss_pred cceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCC---CceeEeecccccccCCCCeeeEEE
Q 003368 648 THLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHR---NLVRVITSCSSIDFQGNDFKALVY 724 (825)
Q Consensus 648 ~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~---niv~l~~~~~~~~~~~~~~~~lv~ 724 (825)
.+.++.|....||+. |..++||+-.. ......+.+|+++++.+++. -+.+.+.++. ...+..++||
T Consensus 24 v~~l~~G~~n~v~~v-----g~~~VlR~~~~--~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~----~~~g~~~~v~ 92 (306)
T 3tdw_A 24 VESLGEGFRNYAILV-----NGDWVFRFPKS--QQGADELNKEIQLLPLLVGCVKVNIPQYVYIGK----RSDGNPFVGY 92 (306)
T ss_dssp EEEEEECSSEEEEEE-----TTTEEEEEESS--HHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEE----CTTSCEEEEE
T ss_pred eeecCCCcceeEEEE-----CCEEEEEecCC--chHHHHHHHHHHHHHHHHhcCCCCCCCeEeecc----cCCCceEEEE
Confidence 467888999999987 45688887432 23346788999999999753 2445555542 1234568999
Q ss_pred EccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhc----------------------------
Q 003368 725 QYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHH---------------------------- 776 (825)
Q Consensus 725 e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~---------------------------- 776 (825)
||++|..+.+... ..++..++..++.++++.++.||..
T Consensus 93 e~i~G~~l~~~~~--------------~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~ 158 (306)
T 3tdw_A 93 RKVQGQILGEDGM--------------AVLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVED 158 (306)
T ss_dssp ECCCSEECHHHHH--------------TTSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHH
T ss_pred eccCCeECchhhh--------------hhCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHH
Confidence 9999988765211 1122333334444444444444421
Q ss_pred -----------------------------CCCCeeecCCCCCCeeecC---CCc-EEEcccCcccccc
Q 003368 777 -----------------------------CQEPTIHCDLKPSNILLDN---NLT-AHVGDFGLARLRQ 811 (825)
Q Consensus 777 -----------------------------~~~~ivHrdlk~~NILl~~---~~~-~ki~DFGla~~~~ 811 (825)
..+.++|+|+++.||+++. ++. +.|.||+.+..-.
T Consensus 159 ~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~gd 226 (306)
T 3tdw_A 159 QVFPLLDESLRDYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAISD 226 (306)
T ss_dssp HTGGGSCHHHHHHHHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEEEC
T ss_pred hcccccchhhHHHHHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCCCC
Confidence 2345799999999999987 455 5899999887643
No 421
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=98.19 E-value=5.6e-06 Score=85.55 Aligned_cols=138 Identities=15% Similarity=0.077 Sum_probs=93.0
Q ss_pred ceeccCCee-EEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCC-CCCceeEeecccccccCCCCeeeEEEEc
Q 003368 649 HLIGIGSFG-SVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIR-HRNLVRVITSCSSIDFQGNDFKALVYQY 726 (825)
Q Consensus 649 ~~ig~G~~g-~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~l~~~~~~~~~~~~~~~~lv~e~ 726 (825)
+.+..|..| .||+.....++..+.+|+-... ....+.+|.+.++.+. +--+.+++++|. +++..++|||+
T Consensus 30 ~~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~---~~~~~~~E~~~l~~l~~~vPVP~v~~~~~-----~~~~~~lvme~ 101 (272)
T 4gkh_A 30 ARDNVGQSGATIYRLYGKPNAPELFLKHGKGS---VANDVTDEMVRLNWLTAFMPLPTIKHFIR-----TPDDAWLLTTA 101 (272)
T ss_dssp EEEECSSSSCEEEEEECCTTCCCEEEEEEETH---HHHHHHHHHHHHHHHTTTSCCCCEEEEEE-----ETTEEEEEEEC
T ss_pred EEccCCCcCCeEEEEEecCCCeEEEEEECCCC---CHhHHHHHHHHHHHhccCCCcCeEEEEEE-----ECCeEEEEEEe
Confidence 445556665 6999887667788999986533 3456788999888775 323556676653 24567999999
Q ss_pred cCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcC-----------------------------
Q 003368 727 MPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHC----------------------------- 777 (825)
Q Consensus 727 ~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~----------------------------- 777 (825)
++|.++.+..... ...+..++.++++.++-||...
T Consensus 102 l~G~~~~~~~~~~----------------~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (272)
T 4gkh_A 102 IPGKTAFQVLEEY----------------PDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDAS 165 (272)
T ss_dssp CCSEEHHHHHHHC----------------GGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGG
T ss_pred eCCccccccccCC----------------HHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhh
Confidence 9998776543110 1122334555555555555310
Q ss_pred --------------------------CCCeeecCCCCCCeeecCCCcEEEcccCccccc
Q 003368 778 --------------------------QEPTIHCDLKPSNILLDNNLTAHVGDFGLARLR 810 (825)
Q Consensus 778 --------------------------~~~ivHrdlk~~NILl~~~~~~ki~DFGla~~~ 810 (825)
.+.++|+|+.+.||+++.++.+-|.||+.|...
T Consensus 166 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~g 224 (272)
T 4gkh_A 166 DFDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIA 224 (272)
T ss_dssp GCCGGGTTCCHHHHHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEEE
T ss_pred hccccccchHHHHHHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECcccccC
Confidence 113789999999999998877789999988754
No 422
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=98.11 E-value=1.3e-05 Score=86.60 Aligned_cols=154 Identities=13% Similarity=0.120 Sum_probs=90.0
Q ss_pred cccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCC--ceeEeecccccccCCCCeeeEE
Q 003368 646 SSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRN--LVRVITSCSSIDFQGNDFKALV 723 (825)
Q Consensus 646 ~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~n--iv~l~~~~~~~~~~~~~~~~lv 723 (825)
...+.++.|....+|+... +|..+++|+.... ..+.+|++++..+.... +.++++++.. ..+..|+|
T Consensus 44 ~~i~~l~gG~~n~~y~v~~--~g~~~vlK~~~~~-----~~~~~E~~~l~~L~~~gvpvP~vl~~~~~----~~g~~~lv 112 (362)
T 3ovc_A 44 SDLMQLSEGEESRAFSFDV--GGRGYVLRVNSCA-----DGFYKDRYVYRHFASAALPIPEVLDIGEF----SESLTYCI 112 (362)
T ss_dssp EEEEEEEECSSEEEEEEEE--TTEEEEEEEESCC-----HHHHHHHHHHHHHCCSSSCCCCEEEEEES----SSSCEEEE
T ss_pred ceEEECCCCCcceEEEEEE--CCcEEEEEeCCch-----hhHHHHHHHHHHHHhcCCCCceEEEeccC----CCCCeEEE
Confidence 3456789999999999885 5788999987532 25788888888876533 3455554321 12457899
Q ss_pred EEccCCCChhhh------------------ccCCCCCC-C--ccc--chhcccC---------------CHHHH------
Q 003368 724 YQYMPNGSLENW------------------LHPDAIPQ-T--DEE--NDEIRNL---------------TLLER------ 759 (825)
Q Consensus 724 ~e~~~~gsL~~~------------------l~~~~~~~-~--~~~--~~~~~~l---------------~~~~~------ 759 (825)
|||++|..+.+. ||...... . ... ......- .|...
T Consensus 113 ~e~l~G~~l~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~gl~~~~~~~~~~~~~w~~~~~~~~~~~l~~~~~~~~~~~~ 192 (362)
T 3ovc_A 113 SRRAQGVTLQDLPETELPAVLQPVAEAMDAIAAADLSQTSGFGPFGPQGIGQYTTWRDFICAIADPHVYHWQTVMDDTVS 192 (362)
T ss_dssp EECCCSEETTTSCGGGSGGGHHHHHHHHHHHHHCCCTTCBCEEEECTTSBEEESSHHHHHHGGGCTTTCCHHHHCCTTTH
T ss_pred EEecCCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCccccCccCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999998666421 11111000 0 000 0000001 22211
Q ss_pred HHHHHHHHHHHHHHHhc-CCCCeeecCCCCCCeeecCCCcEEEcccCccccc
Q 003368 760 ISIAIDVASAVDYLHHH-CQEPTIHCDLKPSNILLDNNLTAHVGDFGLARLR 810 (825)
Q Consensus 760 ~~i~~~va~~l~yLH~~-~~~~ivHrdlk~~NILl~~~~~~ki~DFGla~~~ 810 (825)
......+.+-.+++... ..+.++|+|+.+.||+++++..+.|.||+.+..-
T Consensus 193 ~~~~~~~~~l~~~l~~lp~~~~l~HgDl~~~Nil~~~~~~~~viD~~~~~~g 244 (362)
T 3ovc_A 193 ASVAQALDELMLWAEDCPEVRHLVHADFGSNNVLTDNGRITAVIDWSEAMFG 244 (362)
T ss_dssp HHHHHHHHHHHHHGGGCCCCCEEECSSCSSTTEEEETTEEEEECCCTTCEEE
T ss_pred ccchHHHHHHHHHHhhCCCCcEEEeCCCCCCeEEEeCCCEEEEECCcccccC
Confidence 01111222222333221 1246899999999999988777889999988764
No 423
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=97.93 E-value=2.4e-05 Score=84.34 Aligned_cols=85 Identities=9% Similarity=-0.036 Sum_probs=55.2
Q ss_pred ccee-ccCCeeEEEEEEEc--C----CCeEEEEEEeeccc---chhHHHHHHHHHHhhcCCC---CCceeEeeccccccc
Q 003368 648 THLI-GIGSFGSVYKGTFD--R----DGTIVAIKVLNLQL---QGASKSFAAECRALRNIRH---RNLVRVITSCSSIDF 714 (825)
Q Consensus 648 ~~~i-g~G~~g~Vy~~~~~--~----~g~~vAvK~~~~~~---~~~~~~~~~E~~~l~~l~H---~niv~l~~~~~~~~~ 714 (825)
.+.| +.|....+|+.... . +|+.+++|+..... ......+.+|+++++.++. ..+.++++++.....
T Consensus 25 ~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~ 104 (357)
T 3ats_A 25 ESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDV 104 (357)
T ss_dssp EEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTT
T ss_pred EEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCc
Confidence 4667 88999999998762 0 26788999865432 1012456788888887753 245677776532111
Q ss_pred CCCCeeeEEEEccCCCChhh
Q 003368 715 QGNDFKALVYQYMPNGSLEN 734 (825)
Q Consensus 715 ~~~~~~~lv~e~~~~gsL~~ 734 (825)
....++||||++|..+.+
T Consensus 105 --~g~~~~v~e~l~G~~l~~ 122 (357)
T 3ats_A 105 --LGTPFFLMDYVEGVVPPD 122 (357)
T ss_dssp --TSSCEEEEECCCCBCCCB
T ss_pred --cCCceEEEEecCCCChhh
Confidence 134589999999977754
No 424
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=97.87 E-value=3.5e-05 Score=84.39 Aligned_cols=76 Identities=17% Similarity=0.087 Sum_probs=48.8
Q ss_pred cceeccCCeeEEEEEEEcCCCeEEEEEEeecccc-------hhHHHHHHHHHHhhcCCC--CC-ceeEeecccccccCCC
Q 003368 648 THLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQ-------GASKSFAAECRALRNIRH--RN-LVRVITSCSSIDFQGN 717 (825)
Q Consensus 648 ~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~-------~~~~~~~~E~~~l~~l~H--~n-iv~l~~~~~~~~~~~~ 717 (825)
.+.+|.|.++.||++....+++.|+||....... ...+.+..|.++++.+.. |. +.+++.+. .
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~d-------~ 107 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYSD-------T 107 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEEE-------T
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEEc-------C
Confidence 5679999999999997655678899998653211 122456778888887742 33 33555431 2
Q ss_pred CeeeEEEEccCCC
Q 003368 718 DFKALVYQYMPNG 730 (825)
Q Consensus 718 ~~~~lv~e~~~~g 730 (825)
+..++||||+++.
T Consensus 108 ~~~~lvmE~l~g~ 120 (397)
T 2olc_A 108 EMAVTVMEDLSHL 120 (397)
T ss_dssp TTTEEEECCCTTS
T ss_pred CccEEEEEeCCCc
Confidence 3358999999874
No 425
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=97.73 E-value=0.00016 Score=77.28 Aligned_cols=156 Identities=16% Similarity=0.104 Sum_probs=80.9
Q ss_pred cceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCC--CCceeEeecccccc-cCCCCeeeEEE
Q 003368 648 THLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRH--RNLVRVITSCSSID-FQGNDFKALVY 724 (825)
Q Consensus 648 ~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H--~niv~l~~~~~~~~-~~~~~~~~lv~ 724 (825)
.+.++.|..+.||+... .+| .+++|+.... ...+..|++++..++. -.+.+++....... ....+..++||
T Consensus 37 ~~~l~gG~~n~~~~v~~-~~~-~~vlk~~~~~----~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~ 110 (346)
T 2q83_A 37 IDVIQGNQMALVWKVHT-DSG-AVCLKRIHRP----EKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVY 110 (346)
T ss_dssp EEECC----CEEEEEEE-TTE-EEEEEEECSC----HHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEE
T ss_pred eeeccccccCcEEEEEe-CCC-CEEEEecCCC----HHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEE
Confidence 34566678899999987 344 5899988752 1233345555544431 12333333110000 01245678999
Q ss_pred EccCCCChh--------------hhccCCCCCC--CcccchhcccCCHHHH-----------------------------
Q 003368 725 QYMPNGSLE--------------NWLHPDAIPQ--TDEENDEIRNLTLLER----------------------------- 759 (825)
Q Consensus 725 e~~~~gsL~--------------~~l~~~~~~~--~~~~~~~~~~l~~~~~----------------------------- 759 (825)
||++|..+. ..+|...... ..........-.|...
T Consensus 111 ~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 190 (346)
T 2q83_A 111 DWIEGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYLQ 190 (346)
T ss_dssp ECCCCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred EeecCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 999986553 1122110000 0000000011123211
Q ss_pred --HHHHHHHHHHHHHHHh----------cCCCCeeecCCCCCCeeecCCCcEEEcccCcccc
Q 003368 760 --ISIAIDVASAVDYLHH----------HCQEPTIHCDLKPSNILLDNNLTAHVGDFGLARL 809 (825)
Q Consensus 760 --~~i~~~va~~l~yLH~----------~~~~~ivHrdlk~~NILl~~~~~~ki~DFGla~~ 809 (825)
..+...+.+++++|+. ...+.+||+|+++.||+++.++.+.|.||+.+..
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~~ 252 (346)
T 2q83_A 191 EIDGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVSF 252 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCEE
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhccc
Confidence 0111224456677763 1246899999999999998888999999998764
No 426
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=97.71 E-value=0.00011 Score=76.62 Aligned_cols=78 Identities=17% Similarity=0.141 Sum_probs=56.5
Q ss_pred ccccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCC---CCceeEeecccccccCCCCeee
Q 003368 645 FSSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRH---RNLVRVITSCSSIDFQGNDFKA 721 (825)
Q Consensus 645 f~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H---~niv~l~~~~~~~~~~~~~~~~ 721 (825)
....+.+|.|..+.||+.+. .+|+.|.||+-..........|.+|++.|+.+.- --+.+.+++. ..+
T Consensus 17 v~~v~~~g~G~~~~vyrv~l-~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~---------~~~ 86 (288)
T 3f7w_A 17 VAAVAERGHSHRWHLYRVEL-ADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD---------DRT 86 (288)
T ss_dssp EEEEEEEEEETTEEEEEEEE-TTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE---------TTE
T ss_pred eEEEEecCCCCCeEEEEEEE-CCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEecc---------Cce
Confidence 44567899999999999998 6899999998765443334568899998888742 2244555431 237
Q ss_pred EEEEccCCCCh
Q 003368 722 LVYQYMPNGSL 732 (825)
Q Consensus 722 lv~e~~~~gsL 732 (825)
+||||++++..
T Consensus 87 lv~e~l~~~~~ 97 (288)
T 3f7w_A 87 LAMEWVDERPP 97 (288)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEeecccCC
Confidence 99999987654
No 427
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.59 E-value=1.6e-05 Score=75.12 Aligned_cols=84 Identities=12% Similarity=0.105 Sum_probs=53.9
Q ss_pred CCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCC-CCCCCChhhhcc----cccceeeccccc-cccccCccCCCCCC
Q 003368 80 FRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNK-LEGSIPSEFVSL----YNLKELAIQENN-LTGGIPHFLGNITS 153 (825)
Q Consensus 80 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~L~~N~-l~~~~p~~~~~l~~ 153 (825)
.+|+.||||++.|+..--..+..+++|+.|+|++|. |+..--..+..+ ++|++|+|++|. +|..-=..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356777777776665544556677777777777774 553222334443 368888888874 66443345667788
Q ss_pred CCEEEcccCc
Q 003368 154 LEAISLAYNS 163 (825)
Q Consensus 154 L~~L~Ls~N~ 163 (825)
|+.|+|+++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 8888888764
No 428
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=97.48 E-value=0.00051 Score=71.98 Aligned_cols=149 Identities=13% Similarity=0.070 Sum_probs=91.0
Q ss_pred cccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCC---CCCceeEeecccccccCCCCeeeE
Q 003368 646 SSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIR---HRNLVRVITSCSSIDFQGNDFKAL 722 (825)
Q Consensus 646 ~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~---H~niv~l~~~~~~~~~~~~~~~~l 722 (825)
...+.|+.|....+|+... ++..++||+.... ....|.+|.+.++.+. ...+.++++++.. .+..++
T Consensus 39 ~~~~~l~gG~~n~~y~v~~--~~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~-----~g~~~l 108 (312)
T 3jr1_A 39 KHKEKLYSGEMNEIWLIND--EVQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNS-----QGHSFL 108 (312)
T ss_dssp CEEEEECCSSSSEEEEEES--SSCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEEC-----SSEEEE
T ss_pred eeeEEeCCccceeeeEEEE--CCCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeec-----CCceEE
Confidence 3456789999999999885 4678889987643 3466889998888874 2556777776432 356899
Q ss_pred EEEccCCCChhh-----------hccCCCC-CCC---ccc-ch-----hcccCCHHHHH---HHHH--H-----------
Q 003368 723 VYQYMPNGSLEN-----------WLHPDAI-PQT---DEE-ND-----EIRNLTLLERI---SIAI--D----------- 765 (825)
Q Consensus 723 v~e~~~~gsL~~-----------~l~~~~~-~~~---~~~-~~-----~~~~l~~~~~~---~i~~--~----------- 765 (825)
||||+++..+.. .||.... +.. ... .. ..-.-+|.+.. ++.. +
T Consensus 109 vme~l~G~~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~ 188 (312)
T 3jr1_A 109 LLEALNKSKNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGN 188 (312)
T ss_dssp EEECCCCCCCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSC
T ss_pred EEEeccCCCCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence 999999976521 1232211 100 000 00 00112565321 1111 1
Q ss_pred ---HH-HHHHHHHh-cCCCCeeecCCCCCCeeecCCCcEEEcccC
Q 003368 766 ---VA-SAVDYLHH-HCQEPTIHCDLKPSNILLDNNLTAHVGDFG 805 (825)
Q Consensus 766 ---va-~~l~yLH~-~~~~~ivHrdlk~~NILl~~~~~~ki~DFG 805 (825)
+. +..+.|.. ...+.+||+|+.+.||+++.++ +.|.||+
T Consensus 189 ~~~l~~~l~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~ 232 (312)
T 3jr1_A 189 IDLIVQIVADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA 232 (312)
T ss_dssp HHHHHHHHHHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred HHHHHHHHHHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence 11 11223421 2246799999999999999887 8899984
No 429
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.44 E-value=2e-05 Score=74.52 Aligned_cols=84 Identities=13% Similarity=0.054 Sum_probs=56.5
Q ss_pred CCCCEEEcCCCcccccCCccccCCCCCCEEECCCCc-CCCCCCcCCCCC----CCCCEEEcCCCC-CCCCCChhhhcccc
Q 003368 56 SFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNS-LVGEIPGNLSYC----SRLIGLYLGRNK-LEGSIPSEFVSLYN 129 (825)
Q Consensus 56 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~~~~l~~ 129 (825)
-+|++|||+++.|+..--..+.++++|++|+|++|. |+..-=..++.+ ++|++|+|++|. |+..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 357788888777765444556777888888888874 664333334443 368888888874 76433345677888
Q ss_pred cceeeccccc
Q 003368 130 LKELAIQENN 139 (825)
Q Consensus 130 L~~L~L~~N~ 139 (825)
|++|+|+++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 8888888874
No 430
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=97.23 E-value=0.00098 Score=73.36 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=27.9
Q ss_pred CCCeeecCCCCCCeeecCCCcEEEcccCccccc
Q 003368 778 QEPTIHCDLKPSNILLDNNLTAHVGDFGLARLR 810 (825)
Q Consensus 778 ~~~ivHrdlk~~NILl~~~~~~ki~DFGla~~~ 810 (825)
.+.++|+|+++.||+++.++ ++|.||+.+..-
T Consensus 231 ~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G 262 (420)
T 2pyw_A 231 AQALIHGDLHTGSVMVTQDS-TQVIDPEFSFYG 262 (420)
T ss_dssp CCEEECSCCSGGGEEECSSC-EEECCCTTCEEE
T ss_pred CCeEEecCCCCCcEEEeCCC-CEEEeCcccccC
Confidence 45799999999999998876 999999887754
No 431
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.17 E-value=5.5e-05 Score=72.84 Aligned_cols=113 Identities=12% Similarity=0.134 Sum_probs=67.6
Q ss_pred CCCCCCCCEEEcCCC-cccc----cCCccccCCCCCCEEECCCCcCCCCCC----cCCCCCCCCCEEEcCCCCCCCC---
Q 003368 52 IGNLSFLREIHLSNN-TIQG----KIPGEIGRLFRLEALYLSHNSLVGEIP----GNLSYCSRLIGLYLGRNKLEGS--- 119 (825)
Q Consensus 52 ~~~l~~L~~L~Ls~N-~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~--- 119 (825)
+.+-+.|++|+|++| +|.. .+-.++..-+.|+.|+|++|+|...-. ..+..-+.|+.|+|++|+|...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345567888888875 6652 234455666778888888888774332 2334556778888888877632
Q ss_pred -CChhhhcccccceeecccc---cccc----ccCccCCCCCCCCEEEcccCcC
Q 003368 120 -IPSEFVSLYNLKELAIQEN---NLTG----GIPHFLGNITSLEAISLAYNSL 164 (825)
Q Consensus 120 -~p~~~~~l~~L~~L~L~~N---~l~~----~~p~~~~~l~~L~~L~Ls~N~l 164 (825)
+-+++..-+.|++|+|++| .+.. .+-+.+..-+.|+.|+++.|.+
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 1223444456777777654 2221 1223344456777777776655
No 432
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=97.12 E-value=0.00079 Score=71.10 Aligned_cols=171 Identities=11% Similarity=0.075 Sum_probs=87.4
Q ss_pred ccHHHHHhhcccccc-----cceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCC--ceeE
Q 003368 633 VSYESLLKATDGFSS-----THLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRN--LVRV 705 (825)
Q Consensus 633 ~~~~~~~~~~~~f~~-----~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~n--iv~l 705 (825)
++.+++....+.|.. .+.|+.|....+|+... .+| .+++|+..... ..+.+..|++++..++... +.++
T Consensus 7 ~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~-~~g-~~vlk~~~~~~--~~~~l~~e~~~l~~L~~~g~~vP~~ 82 (322)
T 2ppq_A 7 ITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHT-TKD-PLILTLYEKRV--EKNDLPFFLGLMQHLAAKGLSCPLP 82 (322)
T ss_dssp CCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEE-SSC-CEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCCB
T ss_pred CCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEe-CCc-cEEEEEeCCCC--CHHHHHHHHHHHHHHHHCCCCCCcc
Confidence 344444444443433 35577788899999987 344 68899886521 1234556777776664222 2333
Q ss_pred eecccccc-cCCCCeeeEEEEccCCCChhh--------------hccCC--CCCCCcccchhcccCCHHHHHH-------
Q 003368 706 ITSCSSID-FQGNDFKALVYQYMPNGSLEN--------------WLHPD--AIPQTDEENDEIRNLTLLERIS------- 761 (825)
Q Consensus 706 ~~~~~~~~-~~~~~~~~lv~e~~~~gsL~~--------------~l~~~--~~~~~~~~~~~~~~l~~~~~~~------- 761 (825)
+....... ....+..++||+|++|..+.. .+|.. ....... .......|.....
T Consensus 83 ~~~~~g~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~--~~~~~~~w~~~~~~~~~~~~ 160 (322)
T 2ppq_A 83 LPRKDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRP--NALSVDGWKVLWDKSEERAD 160 (322)
T ss_dssp CCBTTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCB--CTTSHHHHHHHHHHHGGGGG
T ss_pred cCCCCCCEEEEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCccc--CccChHHHHHHHHHHHHHHH
Confidence 32210000 011245689999999865421 01211 0000000 0000112332111
Q ss_pred -----HHHHHHHHHHHHHhc----CCCCeeecCCCCCCeeecCCCcEEEcccCcccc
Q 003368 762 -----IAIDVASAVDYLHHH----CQEPTIHCDLKPSNILLDNNLTAHVGDFGLARL 809 (825)
Q Consensus 762 -----i~~~va~~l~yLH~~----~~~~ivHrdlk~~NILl~~~~~~ki~DFGla~~ 809 (825)
+...+.+.+++++.. ....+||+|+.+.||+++++..+.|.||+.+..
T Consensus 161 ~~~~~l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~~ 217 (322)
T 2ppq_A 161 EVEKGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFACN 217 (322)
T ss_dssp GTSTTHHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred hhhhhhHHHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhccC
Confidence 011244556666532 134689999999999999876668999987764
No 433
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=97.00 E-value=0.002 Score=68.15 Aligned_cols=81 Identities=9% Similarity=0.058 Sum_probs=49.1
Q ss_pred cceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCC--ceeEeecccccc-cCCCCeeeEEE
Q 003368 648 THLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRN--LVRVITSCSSID-FQGNDFKALVY 724 (825)
Q Consensus 648 ~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~n--iv~l~~~~~~~~-~~~~~~~~lv~ 724 (825)
...++ |....||+... .+|+.+++|+..... .....+..|.+++..++... +.+++.. .... ...++..++||
T Consensus 31 ~~~l~-g~~n~~y~v~~-~~g~~~vlK~~~~~~-~~~~~~~~E~~~~~~L~~~g~~vp~~~~~-~g~~~~~~~g~~~~l~ 106 (328)
T 1zyl_A 31 LTPLN-SYENRVYQFQD-EDRRRFVVKFYRPER-WTADQILEEHQFALQLVNDEVPVAAPVAF-NGQTLLNHQGFYFAVF 106 (328)
T ss_dssp CEEEC-CSSSEEEEECC-TTCCCEEEEEECTTT-SCHHHHHHHHHHHHHHHHTTCSBCCCCCB-TTBSCEEETTEEEEEE
T ss_pred EEeec-CcccceEEEEc-CCCCEEEEEEcCCCC-CCHHHHHHHHHHHHHHHHcCCeecceeec-CCcEEEEECCEEEEEE
Confidence 34566 77889998876 467789999986432 12345667887777765222 3344432 1000 11134568899
Q ss_pred EccCCCCh
Q 003368 725 QYMPNGSL 732 (825)
Q Consensus 725 e~~~~gsL 732 (825)
||++|..+
T Consensus 107 ~~i~G~~~ 114 (328)
T 1zyl_A 107 PSVGGRQF 114 (328)
T ss_dssp ECCCCEEC
T ss_pred EecCCCCC
Confidence 99988544
No 434
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.87 E-value=0.0018 Score=58.08 Aligned_cols=55 Identities=22% Similarity=0.255 Sum_probs=25.3
Q ss_pred EEEcCCCccc-ccCCccccCCCCCCEEECCCCcCCCCCCcCCCCCCCCCEEEcCCCCC
Q 003368 60 EIHLSNNTIQ-GKIPGEIGRLFRLEALYLSHNSLVGEIPGNLSYCSRLIGLYLGRNKL 116 (825)
Q Consensus 60 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 116 (825)
.++.+++.++ ..+|..+. .+|++|+|++|+|+.+.++.|..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555555554 23333221 2345555555555544444444444444444444444
No 435
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=96.86 E-value=0.0031 Score=65.78 Aligned_cols=73 Identities=12% Similarity=0.084 Sum_probs=43.6
Q ss_pred cccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCc-eeEeecccccccCCCCeeeEEE
Q 003368 646 SSTHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNL-VRVITSCSSIDFQGNDFKALVY 724 (825)
Q Consensus 646 ~~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~ni-v~l~~~~~~~~~~~~~~~~lv~ 724 (825)
...+.++.|....+|+. ..+++|+....... .-...+|+++++.+....+ .++++++ .+.-++|+
T Consensus 21 ~~i~~l~gG~tN~~~~~------~~~vlR~~~~~~~~-~~~r~~E~~~l~~l~~~g~~P~~~~~~-------~~~~~~v~ 86 (301)
T 3dxq_A 21 TGPLERLGGLTNLVFRA------GDLCLRIPGKGTEE-YINRANEAVAAREAAKAGVSPEVLHVD-------PATGVMVT 86 (301)
T ss_dssp CSCEEEESCSSEEEEEE------TTEEEEEECC-----CCCHHHHHHHHHHHHHTTSSCCEEEEC-------TTTCCEEE
T ss_pred cceeEcCCcccccccee------eeEEEECCCCCccc-eeCHHHHHHHHHHHHHcCCCCceEEEE-------CCCCEEEE
Confidence 33678999999999998 34888887543211 1112457777766643223 3555542 22347899
Q ss_pred Ecc-CCCCh
Q 003368 725 QYM-PNGSL 732 (825)
Q Consensus 725 e~~-~~gsL 732 (825)
||+ ++.++
T Consensus 87 e~i~~g~~l 95 (301)
T 3dxq_A 87 RYIAGAQTM 95 (301)
T ss_dssp ECCTTCEEC
T ss_pred eecCCCccC
Confidence 999 55444
No 436
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.86 E-value=0.0018 Score=58.20 Aligned_cols=56 Identities=25% Similarity=0.304 Sum_probs=31.3
Q ss_pred EEECCCCCCc-cccCcCCCCCCCCCEEEcCCCcccccCCccccCCCCCCEEECCCCcCC
Q 003368 36 VLDLKSKGLI-GSLSPQIGNLSFLREIHLSNNTIQGKIPGEIGRLFRLEALYLSHNSLV 93 (825)
Q Consensus 36 ~l~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 93 (825)
.+|.++++++ ..+|..+. .+|++|+|++|+|+.+.++.|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555554 24443321 24666666666666555555666666666666666553
No 437
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.74 E-value=0.00035 Score=67.22 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=83.2
Q ss_pred CCcEEEEECCCC-CCcc----ccCcCCCCCCCCCEEEcCCCccccc----CCccccCCCCCCEEECCCCcCCCC----CC
Q 003368 31 HRRVTVLDLKSK-GLIG----SLSPQIGNLSFLREIHLSNNTIQGK----IPGEIGRLFRLEALYLSHNSLVGE----IP 97 (825)
Q Consensus 31 ~~~l~~l~L~~n-~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p 97 (825)
...++.|+|+++ ++.. .+-+.+..-+.|+.|+|++|+|... +...+..-+.|++|+|++|+|... +.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 467999999986 6643 3556677778999999999999742 344555678899999999999854 33
Q ss_pred cCCCCCCCCCEEEcCCCC---CCC----CCChhhhcccccceeeccccccc
Q 003368 98 GNLSYCSRLIGLYLGRNK---LEG----SIPSEFVSLYNLKELAIQENNLT 141 (825)
Q Consensus 98 ~~~~~l~~L~~L~Ls~N~---l~~----~~p~~~~~l~~L~~L~L~~N~l~ 141 (825)
..+..-+.|++|+|++|. +.. .+-.++..-+.|+.|+++.|.+.
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 456677889999999764 332 23345667788999999988654
No 438
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=96.65 E-value=0.0041 Score=68.42 Aligned_cols=74 Identities=15% Similarity=0.198 Sum_probs=49.5
Q ss_pred cceeccCCeeEEEEEEEcC-------CCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCc-eeEeecccccccCCCCe
Q 003368 648 THLIGIGSFGSVYKGTFDR-------DGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNL-VRVITSCSSIDFQGNDF 719 (825)
Q Consensus 648 ~~~ig~G~~g~Vy~~~~~~-------~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~ni-v~l~~~~~~~~~~~~~~ 719 (825)
.+.|+.|-...||+..... +++.|++|+.... .....+.+|..+++.+...++ .++++.+ . +
T Consensus 78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~--~~~~~li~E~~~l~~L~~~g~~P~l~~~~-----~--~- 147 (429)
T 1nw1_A 78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP--ETESHLVAESVIFTLLSERHLGPKLYGIF-----S--G- 147 (429)
T ss_dssp EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC--CCHHHHHHHHHHHHHHHHTTSSSCEEEEE-----T--T-
T ss_pred EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC--CcHHHHHHHHHHHHHHHhCCCCCcEEEEe-----C--C-
Confidence 4678888889999998742 2578999987432 112456689888888753334 4666642 1 1
Q ss_pred eeEEEEccCCCCh
Q 003368 720 KALVYQYMPNGSL 732 (825)
Q Consensus 720 ~~lv~e~~~~gsL 732 (825)
.+||||++|.++
T Consensus 148 -g~v~e~l~G~~l 159 (429)
T 1nw1_A 148 -GRLEEYIPSRPL 159 (429)
T ss_dssp -EEEECCCCEEEC
T ss_pred -CEEEEEeCCccc
Confidence 389999987444
No 439
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=96.59 E-value=0.011 Score=65.20 Aligned_cols=75 Identities=11% Similarity=0.059 Sum_probs=47.1
Q ss_pred cceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCc-eeEeecccccccCCCCeeeEEEEc
Q 003368 648 THLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNL-VRVITSCSSIDFQGNDFKALVYQY 726 (825)
Q Consensus 648 ~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~ni-v~l~~~~~~~~~~~~~~~~lv~e~ 726 (825)
.+.|+.|-...+|+.....++..|++|+........ -.-.+|.++++.+...++ .++++++ . + .+||||
T Consensus 113 i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~~-idR~~E~~vl~~L~~~gl~P~ll~~~-----~--~--G~v~e~ 182 (458)
T 2qg7_A 113 FQIINGGITNILIKVKDMSKQAKYLIRLYGPKTDEI-INREREKKISCILYNKNIAKKIYVFF-----T--N--GRIEEF 182 (458)
T ss_dssp EEEECC--CEEEEEEEETTTTEEEEEEEECC-CCSC-SCHHHHHHHHHHHTTSSSBCCEEEEE-----T--T--EEEEEC
T ss_pred EEEcCCCeEeEEEEEEECCCCceEEEEECCCChhhh-cCHHHHHHHHHHHHhcCCCCCEEEEe-----C--C--eEEEEe
Confidence 467888889999999984335788899875332111 011478888888865445 4666653 1 1 259999
Q ss_pred cCCCCh
Q 003368 727 MPNGSL 732 (825)
Q Consensus 727 ~~~gsL 732 (825)
++|.++
T Consensus 183 I~G~~l 188 (458)
T 2qg7_A 183 MDGYAL 188 (458)
T ss_dssp CCSEEC
T ss_pred eCCccC
Confidence 998554
No 440
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=96.51 E-value=0.0075 Score=64.84 Aligned_cols=145 Identities=14% Similarity=0.160 Sum_probs=80.7
Q ss_pred cceeccCCeeEEEEEEEcC-------CCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCC-ceeEeecccccccCCCCe
Q 003368 648 THLIGIGSFGSVYKGTFDR-------DGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRN-LVRVITSCSSIDFQGNDF 719 (825)
Q Consensus 648 ~~~ig~G~~g~Vy~~~~~~-------~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~n-iv~l~~~~~~~~~~~~~~ 719 (825)
.+.+..|-...+|+..... +++.|++|+.... ........+|.++++.+.-.. ..++++++ . +
T Consensus 55 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~-~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~-----~--~- 125 (379)
T 3feg_A 55 VYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAI-LQGVDSLVLESVMFAILAERSLGPQLYGVF-----P--E- 125 (379)
T ss_dssp CEEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC----CCHHHHHHHHHHHHHHHHTTSSCCEEEEE-----T--T-
T ss_pred EEEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCc-cchHHHHHHHHHHHHHHHhcCCCCeEEEEc-----C--C-
Confidence 4567778888999998732 3578999986332 223455668998888775322 34666653 1 1
Q ss_pred eeEEEEccCCCChhhh-----------------ccCCCCCCCcccchhcccCC--HHHHHHHHHHH--------------
Q 003368 720 KALVYQYMPNGSLENW-----------------LHPDAIPQTDEENDEIRNLT--LLERISIAIDV-------------- 766 (825)
Q Consensus 720 ~~lv~e~~~~gsL~~~-----------------l~~~~~~~~~~~~~~~~~l~--~~~~~~i~~~v-------------- 766 (825)
.+||||++|..+..- ||....+. .+... |.+..++..++
T Consensus 126 -g~v~e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~-------~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~ 197 (379)
T 3feg_A 126 -GRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPF-------TKEPHWLFGTMERYLKQIQDLPPTGLPEMNLL 197 (379)
T ss_dssp -EEEEECCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSS-------CCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHH
T ss_pred -ccEEEEecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCC-------CCCcccHHHHHHHHHHHHHhccCcccchhhhh
Confidence 289999998655421 11111110 01111 23333333222
Q ss_pred -----HHHHHHHH----hc-CCCCeeecCCCCCCeeecCC----CcEEEcccCcccc
Q 003368 767 -----ASAVDYLH----HH-CQEPTIHCDLKPSNILLDNN----LTAHVGDFGLARL 809 (825)
Q Consensus 767 -----a~~l~yLH----~~-~~~~ivHrdlk~~NILl~~~----~~~ki~DFGla~~ 809 (825)
...+++|. .. ....++|+|+.+.||+++.+ +.+.+.||..|..
T Consensus 198 ~~~~l~~~~~~L~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~ 254 (379)
T 3feg_A 198 EMYSLKDEMGNLRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSY 254 (379)
T ss_dssp HHTTHHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEE
T ss_pred hhHHHHHHHHHHHHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCc
Confidence 12233332 21 23358899999999999876 7899999988765
No 441
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=96.13 E-value=0.017 Score=61.12 Aligned_cols=33 Identities=27% Similarity=0.269 Sum_probs=28.1
Q ss_pred CCCeeecCCCCCCeeecCC----CcEEEcccCccccc
Q 003368 778 QEPTIHCDLKPSNILLDNN----LTAHVGDFGLARLR 810 (825)
Q Consensus 778 ~~~ivHrdlk~~NILl~~~----~~~ki~DFGla~~~ 810 (825)
.+.++|+|+.+.||+++.+ ..+.|.||+.+..-
T Consensus 182 ~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G 218 (333)
T 3csv_A 182 DMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLG 218 (333)
T ss_dssp CCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEE
T ss_pred CCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcC
Confidence 3578999999999999874 68999999987764
No 442
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=96.13 E-value=0.012 Score=63.19 Aligned_cols=75 Identities=9% Similarity=0.159 Sum_probs=43.4
Q ss_pred cceeccCCeeEEEEEEEcC--------CCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCc-eeEeecccccccCCCC
Q 003368 648 THLIGIGSFGSVYKGTFDR--------DGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNL-VRVITSCSSIDFQGND 718 (825)
Q Consensus 648 ~~~ig~G~~g~Vy~~~~~~--------~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~ni-v~l~~~~~~~~~~~~~ 718 (825)
.+.++.|....+|+..... .++.+++|+....... ......|.++++.+....+ .++++.. .
T Consensus 38 ~~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~~-~~~~~~E~~~l~~L~~~g~~P~~~~~~-------~- 108 (369)
T 3c5i_A 38 VKQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVDE-LYNTISEFEVYKTMSKYKIAPQLLNTF-------N- 108 (369)
T ss_dssp EEEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGGG-TSCHHHHHHHHHHHHHTTSSCCEEEEE-------T-
T ss_pred EEEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCccc-eecHHHHHHHHHHHHhcCCCCceEEec-------C-
Confidence 4567788888999998732 1267888887543211 1123567777777753333 3566531 1
Q ss_pred eeeEEEEccCCCCh
Q 003368 719 FKALVYQYMPNGSL 732 (825)
Q Consensus 719 ~~~lv~e~~~~gsL 732 (825)
-++||||++|..+
T Consensus 109 -~~~v~e~i~G~~l 121 (369)
T 3c5i_A 109 -GGRIEEWLYGDPL 121 (369)
T ss_dssp -TEEEEECCCSEEC
T ss_pred -CcEEEEEecCCcC
Confidence 2689999987544
No 443
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=95.73 E-value=0.053 Score=57.40 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=27.9
Q ss_pred CCeeecCCCCCCeeecCCCcEEEcccCccccc
Q 003368 779 EPTIHCDLKPSNILLDNNLTAHVGDFGLARLR 810 (825)
Q Consensus 779 ~~ivHrdlk~~NILl~~~~~~ki~DFGla~~~ 810 (825)
..++|+|+.+.||++++++.+.|.||+.+...
T Consensus 206 ~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~~ 237 (339)
T 3i1a_A 206 YVLCHSDIHAGNVLVGNEESIYIIDWDEPMLA 237 (339)
T ss_dssp CEEECSCCCGGGEEECGGGCEEECCCSSCEEE
T ss_pred ceeEeCCCCcCCEEEeCCCeEEEEECCCCeeC
Confidence 46899999999999998888999999876654
No 444
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=94.82 E-value=0.11 Score=55.92 Aligned_cols=31 Identities=26% Similarity=0.217 Sum_probs=26.9
Q ss_pred CCeeecCCCCCCeeecCC------CcEEEcccCcccc
Q 003368 779 EPTIHCDLKPSNILLDNN------LTAHVGDFGLARL 809 (825)
Q Consensus 779 ~~ivHrdlk~~NILl~~~------~~~ki~DFGla~~ 809 (825)
..++|+|+.+.||+++++ +.+.+.||..|..
T Consensus 244 ~v~~H~Dl~~~Nil~~~~~~~~~~~~~~lID~E~a~~ 280 (401)
T 3f2s_A 244 VVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp EEEECSCCCGGGEEEETTGGGCSSSCEEECCCTTCEE
T ss_pred eeEEeccCCcccEEEcCCcccCcccceEEEeeccCCc
Confidence 357899999999999876 7899999987764
No 445
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=93.60 E-value=0.12 Score=56.24 Aligned_cols=75 Identities=9% Similarity=0.130 Sum_probs=46.4
Q ss_pred cceeccCCeeEEEEEEEcCC-------CeEEEEEEeecccchhHHHHHHHHHHhhcCCCCC-ceeEeecccccccCCCCe
Q 003368 648 THLIGIGSFGSVYKGTFDRD-------GTIVAIKVLNLQLQGASKSFAAECRALRNIRHRN-LVRVITSCSSIDFQGNDF 719 (825)
Q Consensus 648 ~~~ig~G~~g~Vy~~~~~~~-------g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~n-iv~l~~~~~~~~~~~~~~ 719 (825)
.+.+..|-...+|+...... ++.|++|+....... .-.-.+|.++++.+.-.. ..++++.+ .
T Consensus 75 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t~~-~idR~~E~~~l~~L~~~gi~P~l~~~~-------~-- 144 (424)
T 3mes_A 75 VKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHVGK-FYDSKVELDVFRYLSNINIAPNIIADF-------P-- 144 (424)
T ss_dssp EEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC-C-CCCHHHHHHHHHHHHHTTSSCCEEEEE-------T--
T ss_pred EEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCcch-hcCHHHHHHHHHHHHhcCCCCCEEEEc-------C--
Confidence 45677788889999987421 578999986543211 111246777777765323 34555432 1
Q ss_pred eeEEEEccCCCCh
Q 003368 720 KALVYQYMPNGSL 732 (825)
Q Consensus 720 ~~lv~e~~~~gsL 732 (825)
-++||||++|..+
T Consensus 145 ~~~I~efI~G~~l 157 (424)
T 3mes_A 145 EGRIEEFIDGEPL 157 (424)
T ss_dssp TEEEEECCCSEEC
T ss_pred CCEEEEEeCCccC
Confidence 2689999998664
No 446
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=86.28 E-value=0.49 Score=51.15 Aligned_cols=30 Identities=27% Similarity=0.322 Sum_probs=24.9
Q ss_pred eeecCCCCCCeee------cCCCcEEEcccCccccc
Q 003368 781 TIHCDLKPSNILL------DNNLTAHVGDFGLARLR 810 (825)
Q Consensus 781 ivHrdlk~~NILl------~~~~~~ki~DFGla~~~ 810 (825)
++|+|+.+.||++ +++..+++.||-.|..-
T Consensus 246 fcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~n 281 (401)
T 3g15_A 246 FCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSYN 281 (401)
T ss_dssp EECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEEE
T ss_pred eEEecCCCCeEEEecCcccCcCCeEEEechHhccCC
Confidence 5799999999999 44567999999887653
No 447
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=83.79 E-value=0.1 Score=57.69 Aligned_cols=60 Identities=7% Similarity=-0.016 Sum_probs=16.7
Q ss_pred cceeccCCeeEEEEEEEcCCCeEEEE------EEeeccc--chhHHHHHHHHHHhhcCCCCCceeEeeccc
Q 003368 648 THLIGIGSFGSVYKGTFDRDGTIVAI------KVLNLQL--QGASKSFAAECRALRNIRHRNLVRVITSCS 710 (825)
Q Consensus 648 ~~~ig~G~~g~Vy~~~~~~~g~~vAv------K~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~ 710 (825)
.+.+| ||.||+|.+.....+||| |..+... .+..+.|.+|..++...+|||+++.+++..
T Consensus 147 ~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~ 214 (463)
T 3cxl_A 147 YEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKV 214 (463)
T ss_dssp TTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEE
T ss_pred cccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEE
Confidence 44565 999999999655568999 6655322 223356889999999999999999887643
No 448
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=69.21 E-value=5.9 Score=38.10 Aligned_cols=59 Identities=12% Similarity=0.212 Sum_probs=48.7
Q ss_pred hcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCeeecCCCcEEEcccCcccccccC
Q 003368 750 EIRNLTLLERISIAIDVASAVDYLHHHCQEPTIHCDLKPSNILLDNNLTAHVGDFGLARLRQEV 813 (825)
Q Consensus 750 ~~~~l~~~~~~~i~~~va~~l~yLH~~~~~~ivHrdlk~~NILl~~~~~~ki~DFGla~~~~~~ 813 (825)
..+.++...+++++..|+...++++. =+|--+.|+||.+|.++.|++.-.|+...+++-
T Consensus 74 ~ik~~~~~eKlr~l~ni~~l~~~~~~-----r~tf~L~P~NL~f~~~~~p~i~~RGik~~l~P~ 132 (215)
T 4ann_A 74 NIKSFTKNEKLRYLLNIKNLEEVNRT-----RYTFVLAPDELFFTRDGLPIAKTRGLQNVVDPL 132 (215)
T ss_dssp GGGGSCHHHHHHHHHHGGGGGGGGGS-----SEECCCSGGGEEECTTSCEEESCCEETTTBSCC
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHhcC-----ceEEEEecceEEEcCCCCEEEEEccCccCCCCC
Confidence 34578889999999999988877764 257788899999999999999999987766443
No 449
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=65.70 E-value=7.4 Score=37.55 Aligned_cols=59 Identities=25% Similarity=0.304 Sum_probs=47.8
Q ss_pred hcccCCHHHHHHHHHHHHHHHH-HHHhcCCCCeeecCCCCCCeeecCCCcEEEcccCcccccccC
Q 003368 750 EIRNLTLLERISIAIDVASAVD-YLHHHCQEPTIHCDLKPSNILLDNNLTAHVGDFGLARLRQEV 813 (825)
Q Consensus 750 ~~~~l~~~~~~~i~~~va~~l~-yLH~~~~~~ivHrdlk~~NILl~~~~~~ki~DFGla~~~~~~ 813 (825)
..+.++..+|++++..++.-.. ++++ -+|--+.|+||++|.++.|+|.-.|+-..+++-
T Consensus 78 ~i~~~~~~eKlrll~nl~~L~~~~~~~-----r~tf~l~P~NL~f~~~~~p~i~hRGi~~~lpP~ 137 (219)
T 4ano_A 78 AIRKTTLLSRIRAAIHLVSKVKHHSAR-----RLIFIVCPENLMFNRALEPFFLHVGVKESLPPD 137 (219)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHSSCCSS-----SEECCCCGGGEEECTTCCEEESCCEETTTBSSC
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHhhhC-----ceeEEEeCceEEEeCCCcEEEEEcCCcccCCCC
Confidence 3457888899999999988777 6654 356778899999999999999999987766443
No 450
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=54.68 E-value=3.1 Score=28.53 Aligned_cols=12 Identities=25% Similarity=0.241 Sum_probs=5.3
Q ss_pred HHHHhhhhhhcC
Q 003368 604 SFFIFYWLRRRG 615 (825)
Q Consensus 604 ~~~~~~~~r~~~ 615 (825)
+.+.+|++||+.
T Consensus 29 l~~~~~~RRR~~ 40 (44)
T 2jwa_A 29 VVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHHHCS
T ss_pred HHHHhheehhhh
Confidence 333444455443
No 451
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=53.94 E-value=13 Score=30.91 Aligned_cols=49 Identities=20% Similarity=0.226 Sum_probs=25.8
Q ss_pred cccccCccCCCCCCCCEEEcccCcCcccCCcccccccccceecCcCcCCc
Q 003368 140 LTGGIPHFLGNITSLEAISLAYNSLGGNIPSSLGQLKELKSLGLGGTIPP 189 (825)
Q Consensus 140 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~~~p~ 189 (825)
++.+-...|.++++|+.+.|-.+ ++.+-..+|.++.+|+.+.+.+..|+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~P~ 56 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGEDPS 56 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSCGG
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCCCC
Confidence 34344455555555555555432 33344555666666666655554444
No 452
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=52.59 E-value=29 Score=28.69 Aligned_cols=45 Identities=13% Similarity=0.081 Sum_probs=23.0
Q ss_pred CCCCCCcCCCCCCCCCEEEcCCCCCCCCCChhhhcccccceeeccc
Q 003368 92 LVGEIPGNLSYCSRLIGLYLGRNKLEGSIPSEFVSLYNLKELAIQE 137 (825)
Q Consensus 92 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 137 (825)
++.+...+|.+|++|+.+.+-.+ ++.+-..+|.++.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34444455555555555555543 3334445555555555555544
No 453
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=49.04 E-value=4.5 Score=27.81 Aligned_cols=6 Identities=33% Similarity=0.584 Sum_probs=2.3
Q ss_pred hhhhhh
Q 003368 608 FYWLRR 613 (825)
Q Consensus 608 ~~~~r~ 613 (825)
++++||
T Consensus 32 ~~~RRR 37 (44)
T 2l2t_A 32 VYVRRK 37 (44)
T ss_dssp HHHHTT
T ss_pred HHhhhh
Confidence 333433
No 454
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=45.70 E-value=1.7e+02 Score=29.99 Aligned_cols=146 Identities=14% Similarity=0.075 Sum_probs=74.6
Q ss_pred ccceeccCCeeEEEEEEEcCCCeEEEEEEeecccchhHHHHHHHHHHhhcCCCCCceeEeecc----------cc--c--
Q 003368 647 STHLIGIGSFGSVYKGTFDRDGTIVAIKVLNLQLQGASKSFAAECRALRNIRHRNLVRVITSC----------SS--I-- 712 (825)
Q Consensus 647 ~~~~ig~G~~g~Vy~~~~~~~g~~vAvK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~----------~~--~-- 712 (825)
..+..-.|.. .||.+.. ++..|+||-.. .-..+-|..+++..-.+.-|+.- ++..+ .. .
T Consensus 73 ~I~~s~~Gst-gvff~~t--d~~~~VVK~s~---~l~~E~l~s~LA~~LGlpiP~~R-iv~~~~~E~~e~~~~L~~~~~~ 145 (342)
T 1cja_A 73 GIERSEKGTE-GLFFVET--ESGVFIVKRST---NIESETFCSLLCMRLGLHAPKVR-VVSSNSEEGTNMLECLAAIDKS 145 (342)
T ss_dssp EEEECCSTTS-CEEEEEE--SSCEEEEECCT---THHHHHHHHHHHHHHTCCCCCEE-EEESSSHHHHHHHHHHHHHCSS
T ss_pred EEEeccCCCC-CeEEEEe--CCCEEEEeCcH---HHHHHHHHHHHHHHhCCCCCCee-EEeeCcHHHHHHHHHHHHhhhh
Confidence 3444455654 4555555 56789999542 22344555566555556655532 22211 00 0
Q ss_pred ----ccCCCCeeeEEEEccCCCChhhhccCCCCCCCcccchhcccCCHHHHHHHHHHHHHHHHHHHhcC-CCCeee-cCC
Q 003368 713 ----DFQGNDFKALVYQYMPNGSLENWLHPDAIPQTDEENDEIRNLTLLERISIAIDVASAVDYLHHHC-QEPTIH-CDL 786 (825)
Q Consensus 713 ----~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~va~~l~yLH~~~-~~~ivH-rdl 786 (825)
........+++|||.+|..|.+.-+.. ....+.... .-..+-.-+++++.... +.+.+. .--
T Consensus 146 ~~~l~~l~~~~~~l~meyv~G~~L~e~~~~~----------~~~~f~~~~--~k~LG~Ii~FDi~InN~DR~Pl~W~n~G 213 (342)
T 1cja_A 146 FRVITTLANQANILLMELVRGITLNKLTTTS----------APEVLTKST--MQQLGSLMALDVIVNNSDRLPIAWTNEG 213 (342)
T ss_dssp SCHHHHHTTCSEEEEEECCCEEESTTCCSSS----------HHHHSCHHH--HHHHHHHHHHHHHHTCCSSSCSSSCSCC
T ss_pred hHHHHHhhcccceehhhhcCCCccccchhhh----------hhhhcCHHH--HHhhchhheehhhhcCCccCcccccCCC
Confidence 001122456999999976654332110 001122111 11222234566666543 233332 235
Q ss_pred CCCCeeecCCC-cEEEcccCcccccc
Q 003368 787 KPSNILLDNNL-TAHVGDFGLARLRQ 811 (825)
Q Consensus 787 k~~NILl~~~~-~~ki~DFGla~~~~ 811 (825)
.++|||++++. .+.+.|-+.|-+-.
T Consensus 214 N~~NIL~~~~n~~~~~IDhn~af~~~ 239 (342)
T 1cja_A 214 NLDNIMLSERGATVVPIDSKIIPLDA 239 (342)
T ss_dssp CGGGEEEESBTTCEEECSCCCCCCCS
T ss_pred ChhheEEeCCCCeEEEEcCCccccCC
Confidence 78999998755 48999999997643
No 455
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=22.23 E-value=27 Score=19.20 Aligned_cols=12 Identities=25% Similarity=0.886 Sum_probs=8.6
Q ss_pred CCCCceeeceee
Q 003368 16 SHHFCDWEGITC 27 (825)
Q Consensus 16 ~~~~C~~~g~~c 27 (825)
.+..|+|+|+.-
T Consensus 4 adgacswrglen 15 (23)
T 3ox7_P 4 ADGACSWRGLEN 15 (26)
T ss_pred cCcccccccchh
Confidence 356899998753
Done!