Your job contains 1 sequence.
>003369
MQPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQ
QLLLGIRRANRQPANLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVVP
LAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGW
DESTAGEKRNRVSIWEIEPVTAPFFICPPPFFRSKHPRQADDDASDLDNVFKRTMPWIGD
DFGVKDSQSLPGLSLVQWMNMQQNPSLANAMQSSYMHSLPGSILQNLNGGLSQMPQQNNL
QYTGQSLPQQVPQIDQLAKLPSTVNPLGSNILPQQPLGDISQQSRQNMITQNLPSGPVQA
QVLQPQNLVQTSNILQQQPSIQNPQLPANLPQNLQQQQQQQHIMGQNQQQNLMQTQLPDP
INQNLQMSDKQIQLHLLQKLQQQRQSLLSQQSALQQPAQLIQLQDQQRQLLDASQSFSRS
GTPTQMLEMHQVTPTSLPQSNIMSQQIANSGSLNNVQFSQPPQQPKLEQQQPGILPQMPG
HMGLPASHIINPVSTAGNSALTGAAGVGQSVITDDNPSCSTSPSTNNCQRLIQPTINSRT
HRSAGIGEEVAQSASALLNPSALETMPSNANLVKDLPHKSDVKPSVNISKTQNQGFFTPQ
TYLNGAATQTDYLDTSSSTTSVCLSQNDVHLQQNNSLSYNPQSTLRDASQDGEVPVDPRS
NIPYGANIDGPLGSMNPDPLLTKGMMGLGKDFSNNISSGAMLANYENSKDAQQELSSSIV
SQSFGVPDMAFNSIDSTINDSSFLNGGPWAPPPQFPQRMRTYTKV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 003369
(825 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2202205 - symbol:ARF19 "auxin response factor ... 1119 2.2e-129 3
TAIR|locus:2204237 - symbol:ARF6 "auxin response factor 6... 820 1.8e-88 3
TAIR|locus:2035454 - symbol:MP "MONOPTEROS" species:3702 ... 792 6.5e-83 2
TAIR|locus:2152642 - symbol:ARF8 "auxin response factor 8... 764 8.1e-76 1
TAIR|locus:2174013 - symbol:ARF2 "auxin response factor 2... 598 8.7e-61 2
TAIR|locus:2175098 - symbol:ARF4 "auxin response factor 4... 531 8.4e-53 2
TAIR|locus:2138096 - symbol:ARF9 "auxin response factor 9... 532 3.1e-51 1
TAIR|locus:2025991 - symbol:ARF1 "auxin response factor 1... 531 4.0e-51 1
TAIR|locus:2039124 - symbol:ARF11 "auxin response factor ... 488 6.8e-49 2
TAIR|locus:2076765 - symbol:ARF18 "auxin response factor ... 482 4.9e-48 2
TAIR|locus:2057609 - symbol:ETT "ETTIN" species:3702 "Ara... 484 3.8e-46 1
TAIR|locus:2036288 - symbol:ARF22 "auxin response factor ... 481 8.3e-46 1
TAIR|locus:2009298 - symbol:ARF21 "auxin response factor ... 469 2.3e-44 1
TAIR|locus:2014731 - symbol:ARF14 "auxin response factor ... 462 1.5e-43 1
TAIR|locus:2026145 - symbol:ARF12 "auxin response factor ... 454 1.2e-42 1
TAIR|locus:2206717 - symbol:ARF20 "auxin response factor ... 454 1.2e-42 1
TAIR|locus:2057517 - symbol:ARF10 "auxin response factor ... 245 2.4e-34 3
TAIR|locus:2008991 - symbol:ARF13 "AUXIN RESPONSE FACTOR ... 206 3.4e-26 2
TAIR|locus:2029436 - symbol:ARF17 "auxin response factor ... 230 1.6e-25 3
TAIR|locus:2126460 - symbol:ARF16 "auxin response factor ... 245 9.1e-18 2
TAIR|locus:2037169 - symbol:ARF23 "auxin response factor ... 159 8.9e-10 1
DICTYBASE|DDB_G0285837 - symbol:DDB_G0285837 "BRWD group ... 134 0.00015 3
TAIR|locus:2085969 - symbol:EDF3 "ethylene response DNA b... 117 0.00081 1
>TAIR|locus:2202205 [details] [associations]
symbol:ARF19 "auxin response factor 19" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0009725 "response to hormone
stimulus" evidence=IEA] [GO:0009733 "response to auxin stimulus"
evidence=RCA;IMP;NAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0048366 "leaf
development" evidence=IGI] [GO:0048527 "lateral root development"
evidence=IGI;RCA] [GO:0009723 "response to ethylene stimulus"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA] [GO:0010311
"lateral root formation" evidence=IGI] [GO:0007155 "cell adhesion"
evidence=RCA] [GO:0009741 "response to brassinosteroid stimulus"
evidence=RCA] [GO:0010090 "trichome morphogenesis" evidence=RCA]
[GO:0010583 "response to cyclopentenone" evidence=RCA] [GO:0045010
"actin nucleation" evidence=RCA] [GO:0048765 "root hair cell
differentiation" evidence=RCA] [GO:0071555 "cell wall organization"
evidence=RCA] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0046983 "protein dimerization activity"
evidence=IDA] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009733
GO:GO:0009734 GO:GO:0009723 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0046983 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0010311 GO:GO:0048366 HOGENOM:HOG000241141
EMBL:U53672 EMBL:AY008390 EMBL:AY669794 EMBL:AC069143 EMBL:AB493467
EMBL:AJ441312 IPI:IPI00534870 PIR:G86325 RefSeq:NP_173356.1
UniGene:At.10488 ProteinModelPortal:Q8RYC8 SMR:Q8RYC8 IntAct:Q8RYC8
STRING:Q8RYC8 EnsemblPlants:AT1G19220.1 GeneID:838505
KEGG:ath:AT1G19220 GeneFarm:3421 TAIR:At1g19220 eggNOG:NOG331338
InParanoid:Q8RYC8 OMA:WEIEPVI PhylomeDB:Q8RYC8
ProtClustDB:CLSN2914206 Genevestigator:Q8RYC8 GermOnline:AT1G19220
Uniprot:Q8RYC8
Length = 1086
Score = 1119 (399.0 bits), Expect = 2.2e-129, Sum P(3) = 2.2e-129
Identities = 225/383 (58%), Positives = 268/383 (69%)
Query: 1 MQPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQ 60
MQPPAQE++A+DLHD WTFRHIYRGQPKRHLLTTGWS+FVS KRLFAGDSVLF+RDEK
Sbjct: 159 MQPPAQEIVAKDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFVRDEKS 218
Query: 61 QLLLGIRRANRQPANXXXXXXXXXXMHIGILXXXXXXXXNNSPFTVFYNPRASPSEFVVP 120
QL+LGIRRANRQ MHIGIL N+SPFT+F+NPRASPSEFVVP
Sbjct: 219 QLMLGIRRANRQTPTLSSSVISSDSMHIGILAAAAHANANSSPFTIFFNPRASPSEFVVP 278
Query: 121 LAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGW 180
LAKY KA+++ Q+SLGMRFRMMFETE+ G RRYMGT+TGISDLDPVRWK SQWRNLQVGW
Sbjct: 279 LAKYNKALYA-QVSLGMRFRMMFETEDCGVRRYMGTVTGISDLDPVRWKGSQWRNLQVGW 337
Query: 181 DESTAGEKRNRVSIWEIEPVTAPFFICPPPFFRSKHPRQAD--DDASDLDNVFKRTMPWI 238
DESTAG++ +RVSIWEIEPV PF+ICPPPFFR K+PRQ DD D++N FKR MPW+
Sbjct: 338 DESTAGDRPSRVSIWEIEPVITPFYICPPPFFRPKYPRQPGMPDDELDMENAFKRAMPWM 397
Query: 239 GDDFGVKDSQS--LPGLSLVQWMNMQQNPSLANAMQSSYMHSLPGSILQ-NLNGGLSQMP 295
G+DFG+KD+QS PGLSLVQWM+MQQN N + S LP ++ NL +
Sbjct: 398 GEDFGMKDAQSSMFPGLSLVQWMSMQQN----NPLSGSATPQLPSALSSFNLPNNFASND 453
Query: 296 QQNNLQYTGQSLPQQVPQIDQLAKLPSTVNPLGSNILPQQPLGDISQQSRQNMITQNLPS 355
L + +L Q ++ P+TVN + S + QP SQQ +Q Q+
Sbjct: 454 PSKLLNFQSPNLSSANSQFNK----PNTVNHI-SQQMQAQPAMVKSQQQQQQQQQQHQHQ 508
Query: 356 GPVQAQVLQPQNLVQTSNILQQQ 378
Q Q+ Q Q L + +QQQ
Sbjct: 509 ---QQQLQQQQQLQMSQQQVQQQ 528
Score = 149 (57.5 bits), Expect = 2.2e-129, Sum P(3) = 2.2e-129
Identities = 45/116 (38%), Positives = 65/116 (56%)
Query: 718 PRSNIPYGANIDGPLGSMNPDPLLTKGMMGLGKDFSNNISSGAMLANYENS-KDAQQELS 776
PR+N+ + N++ ++ DPL ++ KDF N ++ NY N+ +D + ELS
Sbjct: 868 PRNNLAFPGNLE----AVTSDPLYSQ------KDFQN------LVPNYGNTPRDIETELS 911
Query: 777 SSIVS-QSFGVPDMAF-----NSIDSTINDSSFLNGGP-WAPPPQFPQRMRTYTKV 825
S+ +S QSFG+P + F N + INDS +NGG W P QRMRTYTKV
Sbjct: 912 SAAISSQSFGIPSIPFKPGCSNEVGG-INDSGIMNGGGLW---PNQTQRMRTYTKV 963
Score = 81 (33.6 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
Identities = 41/125 (32%), Positives = 54/125 (43%)
Query: 244 VKDSQSLPGLSLVQWMNMQQNPSLANAMQSSYMHSLPGSILQ-NLNGGLSQMPQQNNLQY 302
+++ Q L +Q N+ QNP Q S S P LQ L L Q QQ ++
Sbjct: 608 LRNQQEQSSLHSLQ-QNLSQNPQQLQMQQQSSKPS-PSQQLQLQLLQKLQQQQQQQSIPP 665
Query: 303 TGQSL-PQ----QVPQIDQLAKLPSTVN--PL--GSNILP-----QQPLGDISQQSRQNM 348
SL PQ Q Q QL +L S+ N PL G+N P Q P +S Q + M
Sbjct: 666 VSSSLQPQLSALQQTQSHQLQQLLSSQNQQPLAHGNNSFPASTFMQPPQIQVSPQQQGQM 725
Query: 349 ITQNL 353
+NL
Sbjct: 726 SNKNL 730
Score = 54 (24.1 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 30/95 (31%), Positives = 42/95 (44%)
Query: 288 NGGLSQMPQ-QNNLQYTGQSLPQQVPQIDQLAKLPSTVNPLGSNILPQQPLGDISQQSRQ 346
N GLSQM +Q+ Q Q+ + + S+++ L N L Q P Q Q
Sbjct: 580 NKGLSQMTSFAQEMQFQQQLEMHNSSQLLRNQQEQSSLHSLQQN-LSQNP----QQLQMQ 634
Query: 347 NMITQNLPSGPVQAQVLQPQNLVQTSNILQQQPSI 381
++ PS +Q Q+LQ L Q QQQ SI
Sbjct: 635 QQSSKPSPSQQLQLQLLQ--KLQQQ----QQQQSI 663
Score = 37 (18.1 bits), Expect = 2.2e-129, Sum P(3) = 2.2e-129
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 485 QMLEMHQVTPTSLPQSNIMSQQIANSGSL 513
Q ++ Q + Q + Q I N+G++
Sbjct: 508 QQQQLQQQQQLQMSQQQVQQQGIYNNGTI 536
>TAIR|locus:2204237 [details] [associations]
symbol:ARF6 "auxin response factor 6" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009733 "response
to auxin stimulus" evidence=IMP] [GO:0009908 "flower development"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009855 "determination of bilateral symmetry" evidence=RCA]
[GO:0009886 "post-embryonic morphogenesis" evidence=RCA]
[GO:0009887 "organ morphogenesis" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010014
"meristem initiation" evidence=RCA] [GO:0010051 "xylem and phloem
pattern formation" evidence=RCA] [GO:0010073 "meristem maintenance"
evidence=RCA] [GO:0048439 "flower morphogenesis" evidence=RCA]
[GO:0048481 "ovule development" evidence=RCA] [GO:0048507 "meristem
development" evidence=RCA] [GO:0048519 "negative regulation of
biological process" evidence=RCA] InterPro:IPR003311
InterPro:IPR003340 InterPro:IPR010525 InterPro:IPR011525
Pfam:PF02309 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009733 GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC025295
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
GO:GO:0009908 HOGENOM:HOG000241141 EMBL:AF013467 EMBL:AY669788
EMBL:EU550049 EMBL:EU550050 EMBL:EU550051 EMBL:EU550052
EMBL:EU550053 EMBL:EU550054 EMBL:EU550055 EMBL:EU550056
EMBL:EU550057 EMBL:EU550058 EMBL:EU550059 EMBL:EU550060
EMBL:EU550061 EMBL:EU550062 EMBL:EU550063 EMBL:EU550064
EMBL:EU550065 EMBL:EU550066 EMBL:EU550067 EMBL:EU550068
EMBL:EU550069 EMBL:EU550070 EMBL:EU550071 EMBL:EU550072
IPI:IPI00533211 IPI:IPI00656643 PIR:F86427 RefSeq:NP_001031115.1
RefSeq:NP_174323.1 UniGene:At.21939 ProteinModelPortal:Q9ZTX8
SMR:Q9ZTX8 IntAct:Q9ZTX8 STRING:Q9ZTX8 PaxDb:Q9ZTX8 PRIDE:Q9ZTX8
EnsemblPlants:AT1G30330.2 GeneID:839913 KEGG:ath:AT1G30330
GeneFarm:3369 TAIR:At1g30330 eggNOG:NOG288258 InParanoid:Q9ZTX8
OMA:ANSHWRS PhylomeDB:Q9ZTX8 ProtClustDB:CLSN2686713
Genevestigator:Q9ZTX8 GermOnline:AT1G30330 Uniprot:Q9ZTX8
Length = 935
Score = 820 (293.7 bits), Expect = 1.8e-88, Sum P(3) = 1.8e-88
Identities = 183/384 (47%), Positives = 230/384 (59%)
Query: 2 QPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQ 61
QPPAQELMARDLHDN W FRHI+RGQPKRHLLTTGWS+FVS KRL AGDSVLFI ++K Q
Sbjct: 163 QPPAQELMARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQ 222
Query: 62 LLLGIRRANRQPANXXXXXXXXXXMHIGILXXXXXXXXNNSPFTVFYNPRASPSEFVVPL 121
LLLGIRRANR MH+G+L NS FT+FYNPRASPSEFV+PL
Sbjct: 223 LLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPL 282
Query: 122 AKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWD 181
AKY KAV+ ++S+GMRFRM+FETEES RRYMGTITGI DLDP RW NS WR+++VGWD
Sbjct: 283 AKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDPTRWANSHWRSVKVGWD 342
Query: 182 ESTAGEKRNRVSIWEIEPVTAPFFICPPPF-FRSKHP----RQADDDASDLDNVFKRTMP 236
ESTAGE++ RVS+WEIEP+T F + P PF R K P + + D + P
Sbjct: 343 ESTAGERQPRVSLWEIEPLTT-FPMYPSPFPLRLKRPWPPGLPSFHGLKEDDMGMSMSSP 401
Query: 237 WIGDDFGVKDSQSLPGLSLVQWMNMQQNPSLANAMQSSYMHSLPGSILQNLNGGLSQMPQ 296
+ D G++ S + G+ + WM + + S MQ+ ++ + LQ++ G
Sbjct: 402 LMWDR-GLQ-SLNFQGMGVNPWMQPRLDTSGLLGMQNDVYQAMAAAALQDMRGIDPAKAA 459
Query: 297 QNNLQYTGQ-SLPQQVPQIDQLAKLPSTVNPLGSNILPQQPLGD-ISQQSRQNMITQNLP 354
+ LQ+ Q P + Q L ++ + QQ +SQQ +Q + Q
Sbjct: 460 ASLLQFQNSPGFSMQSPSLVQPQMLQQQLSQQQQQLSQQQQQQQQLSQQQQQQLSQQ--- 516
Query: 355 SGPVQAQVLQPQNLVQTSNILQQQ 378
Q Q L Q Q S QQQ
Sbjct: 517 ----QQQQLSQQQQQQLSQQQQQQ 536
Score = 54 (24.1 bits), Expect = 1.8e-88, Sum P(3) = 1.8e-88
Identities = 22/91 (24%), Positives = 40/91 (43%)
Query: 695 NSLSYNPQSTLRDAS--QDGEVPVDPRSNIPYGANIDGPLGSMNPDPLLTKGMMGLGKDF 752
N++S P R+ S Q+G DP S++ +G NID + P+ + +G+
Sbjct: 691 NAVSLPPFPGGRECSIEQEGSAS-DPHSHLLFGVNIDSS-SLLMPNGMSNLRSIGIEGGD 748
Query: 753 SNNISSGAMLANYENSKDAQQELSSSIVSQS 783
S + + N + S + SS + +S
Sbjct: 749 STTLPFTSSNFNNDFSGNLAMTTPSSCIDES 779
Score = 42 (19.8 bits), Expect = 1.8e-88, Sum P(3) = 1.8e-88
Identities = 13/45 (28%), Positives = 18/45 (40%)
Query: 593 QPTINSRTHRSAGIGEEVAQSASALLNPSALETMPSNANLVKDLP 637
+P ++S S G G QS L S +P NA + P
Sbjct: 656 RPAVDSSFQHS-GAGNNNTQSVLEQLGQSHTSNVPPNAVSLPPFP 699
>TAIR|locus:2035454 [details] [associations]
symbol:MP "MONOPTEROS" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA;ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;IEP]
[GO:0009725 "response to hormone stimulus" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS;TAS] [GO:0009733 "response to auxin
stimulus" evidence=IEP;RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042802 "identical protein binding" evidence=IPI]
[GO:0016020 "membrane" evidence=IDA] [GO:0009790 "embryo
development" evidence=IGI] [GO:0009908 "flower development"
evidence=IGI] [GO:0010305 "leaf vascular tissue pattern formation"
evidence=IGI] [GO:0048364 "root development" evidence=IGI]
[GO:0048507 "meristem development" evidence=IGI;RCA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IDA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA] [GO:0007155 "cell adhesion" evidence=RCA] [GO:0009741
"response to brassinosteroid stimulus" evidence=RCA] [GO:0009855
"determination of bilateral symmetry" evidence=RCA] [GO:0009886
"post-embryonic morphogenesis" evidence=RCA] [GO:0009887 "organ
morphogenesis" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009944 "polarity specification of
adaxial/abaxial axis" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010014 "meristem initiation"
evidence=RCA] [GO:0010051 "xylem and phloem pattern formation"
evidence=IMP;RCA] [GO:0010073 "meristem maintenance" evidence=RCA]
[GO:0010090 "trichome morphogenesis" evidence=RCA] [GO:0016246 "RNA
interference" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0045010 "actin nucleation"
evidence=RCA] [GO:0048439 "flower morphogenesis" evidence=RCA]
[GO:0048481 "ovule development" evidence=RCA] [GO:0048519 "negative
regulation of biological process" evidence=RCA] [GO:0048527
"lateral root development" evidence=RCA] [GO:0048765 "root hair
cell differentiation" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0071555 "cell wall organization"
evidence=RCA] [GO:0009942 "longitudinal axis specification"
evidence=IMP] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009733
GO:GO:0009734 GO:GO:0016020 GO:GO:0003700 GO:GO:0006351
GO:GO:0048364 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0044212 GO:GO:0009908 GO:GO:0048507
EMBL:AC007797 KO:K14486 EMBL:AF037228 EMBL:AF037229 EMBL:AF334716
EMBL:BT002050 EMBL:BT008805 EMBL:AB199792 EMBL:U79557 EMBL:EF598523
EMBL:EF598524 EMBL:EF598525 EMBL:EF598526 EMBL:EF598527
EMBL:EF598528 EMBL:EF598529 EMBL:EF598530 EMBL:EF598531
EMBL:EF598532 EMBL:EF598533 EMBL:EF598534 EMBL:EF598535
EMBL:EF598536 EMBL:EF598537 EMBL:EF598538 EMBL:EF598539
EMBL:EF598540 EMBL:EF598541 EMBL:EF598542 EMBL:EF598543
EMBL:EF598544 EMBL:EF598545 EMBL:EF598546 IPI:IPI00538603
PIR:G86331 PIR:T51807 RefSeq:NP_173414.1 UniGene:At.10494
UniGene:At.41731 ProteinModelPortal:P93024 SMR:P93024 IntAct:P93024
STRING:P93024 PaxDb:P93024 PRIDE:P93024 EnsemblPlants:AT1G19850.1
GeneID:838573 KEGG:ath:AT1G19850 GeneFarm:3368 TAIR:At1g19850
eggNOG:NOG291711 InParanoid:P93024 OMA:ARYNKAT PhylomeDB:P93024
ProtClustDB:CLSN2682929 Genevestigator:P93024 GermOnline:AT1G19850
GO:GO:0010305 GO:GO:0009942 Uniprot:P93024
Length = 902
Score = 792 (283.9 bits), Expect = 6.5e-83, Sum P(2) = 6.5e-83
Identities = 183/388 (47%), Positives = 228/388 (58%)
Query: 2 QPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQ 61
QPP QEL+ RDLH+N WTFRHIYRGQPKRHLLTTGWSLFV KRL AGDSVLFIRDEK Q
Sbjct: 192 QPPTQELVVRDLHENTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQ 251
Query: 62 LLLGIRRANRQPANXXXXXXXXXXMHIGILXXXXXXXXNNSPFTVFYNPRASPSEFVVPL 121
L++G+RRANRQ MHIG+L N +PF +FYNPRA P+EFV+PL
Sbjct: 252 LMVGVRRANRQQTALPSSVLSADSMHIGVLAAAAHATANRTPFLIFYNPRACPAEFVIPL 311
Query: 122 AKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWD 181
AKY KA+ +Q+S+GMRF MMFETE+SG RRYMGTI GISDLDP+RW S+WRNLQV WD
Sbjct: 312 AKYRKAICGSQLSVGMRFGMMFETEDSGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWD 371
Query: 182 ESTAGEKRNRVSIWEIEPVTAPFFICPP---PFFRSKHPRQADDDASDLDNVFKRTMPWI 238
E +K RVS W+IE + FI P R HP + ++ ++ KR + +
Sbjct: 372 EPGCNDKPTRVSPWDIETPES-LFIFPSLTSGLKRQLHPSYFAGE-TEWGSLIKRPLIRV 429
Query: 239 GDDF-GVKDSQSLPGLSLVQWMNMQQNPSLANAMQSSYMHSLPGSILQNLNGGL-SQMPQ 296
D G+ S P ++ Q M M P N S+M + +I+ NGGL M
Sbjct: 430 PDSANGIMPYASFPSMASEQLMKMMMRPH-NNQNVPSFMSEMQQNIVMG-NGGLLGDMKM 487
Query: 297 QNNLQYTGQSLPQQVPQIDQLAKLPSTVNPLGSNILPQ-QPLGD-ISQQSR-QNMITQNL 353
Q L +S Q PQ KL TVNP SN Q Q L +S ++ +N
Sbjct: 488 QQPLMMNQKSEMVQ-PQ----NKL--TVNPSASNTSGQEQNLSQSMSAPAKPENSTLSGC 540
Query: 354 PSGPVQ---AQVLQPQNLVQTSNILQQQ 378
SG VQ Q ++ + V TS + ++
Sbjct: 541 SSGRVQHGLEQSMEQASQVTTSTVCNEE 568
Score = 58 (25.5 bits), Expect = 6.5e-83, Sum P(2) = 6.5e-83
Identities = 29/89 (32%), Positives = 41/89 (46%)
Query: 751 DFSNNISSGAMLANYENS--KDAQQELSSSIV--SQSFGVPDMAFNS-----IDSTIN-D 800
DF N+ SG ++ N S +D Q +++S+ SQ+F D NS S ++ D
Sbjct: 713 DFQNH-PSGCLVGNNNTSFAQDVQSQITSASFADSQAFSRQDFPDNSGGTGTSSSNVDFD 771
Query: 801 SSFLN----GGPWAPPPQFPQRMRTYTKV 825
L G W P R+RTYTKV
Sbjct: 772 DCSLRQNSKGSSWQKIAT-P-RVRTYTKV 798
Score = 39 (18.8 bits), Expect = 6.5e-81, Sum P(2) = 6.5e-81
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 492 VTPTSLPQSNIMSQQIANSGSLNNVQFS 519
++PT + Q + ++ NS +N+++ S
Sbjct: 873 LSPTEVQQMSEEGMKLLNSAGINDLKTS 900
>TAIR|locus:2152642 [details] [associations]
symbol:ARF8 "auxin response factor 8" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS;TAS]
[GO:0009733 "response to auxin stimulus" evidence=IMP] [GO:0009908
"flower development" evidence=IGI] [GO:0009855 "determination of
bilateral symmetry" evidence=RCA] [GO:0009886 "post-embryonic
morphogenesis" evidence=RCA] [GO:0009887 "organ morphogenesis"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0010051 "xylem and phloem pattern formation"
evidence=RCA] [GO:0048439 "flower morphogenesis" evidence=RCA]
[GO:0048481 "ovule development" evidence=RCA] [GO:0048507 "meristem
development" evidence=RCA] [GO:0048519 "negative regulation of
biological process" evidence=RCA] InterPro:IPR003311
InterPro:IPR003340 InterPro:IPR010525 InterPro:IPR011525
Pfam:PF02309 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
PROSITE:PS50962 SMART:SM01019 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009733 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0009908 HOGENOM:HOG000241141
ProtClustDB:CLSN2686713 EMBL:AF042196 EMBL:AY669790 EMBL:AB024026
IPI:IPI00525703 IPI:IPI00846789 RefSeq:NP_001078672.1
RefSeq:NP_198518.1 UniGene:At.23446 ProteinModelPortal:Q9FGV1
SMR:Q9FGV1 IntAct:Q9FGV1 STRING:Q9FGV1 PaxDb:Q9FGV1 PRIDE:Q9FGV1
EnsemblPlants:AT5G37020.1 GeneID:833672 KEGG:ath:AT5G37020
GeneFarm:3372 TAIR:At5g37020 eggNOG:NOG292968 InParanoid:Q9FGV1
OMA:NDAYLPA PhylomeDB:Q9FGV1 Genevestigator:Q9FGV1
GermOnline:AT5G37020 Uniprot:Q9FGV1
Length = 811
Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
Identities = 183/385 (47%), Positives = 227/385 (58%)
Query: 1 MQPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQ 60
+QPPAQEL+ARDLHD W FRHI+RGQPKRHLLTTGWS+FVS KRL AGDSV+FIR+EK
Sbjct: 159 LQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIRNEKN 218
Query: 61 QLLLGIRRANRQPANXXXXXXXXXXMHIGILXXXXXXXXNNSPFTVFYNPRASPSEFVVP 120
QL LGIR A R MHIG+L NS FTVF++PRAS SEFV+
Sbjct: 219 QLFLGIRHATRPQTIVPSSVLSSDSMHIGLLAAAAHASATNSCFTVFFHPRASQSEFVIQ 278
Query: 121 LAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGW 180
L+KY KAV +IS+GMRFRM+FETEES RRYMGTITGISDLD VRW NS WR+++VGW
Sbjct: 279 LSKYIKAVFHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGW 338
Query: 181 DESTAGEKRNRVSIWEIEPVTAPFFICPPPF-FRSKHPRQADDDA-SDLDNVFKRTMPWI 238
DESTAGE++ RVS+WEIEP+T F + P F R K P A + D + W+
Sbjct: 339 DESTAGERQPRVSLWEIEPLTT-FPMYPSLFPLRLKRPWHAGTSSLPDGRGDLGSGLTWL 397
Query: 239 GDDFGVKDSQ---SLPGLSLVQWMNMQQNPSLANAMQSSYMHSLPGSILQNLNGG--LSQ 293
G + + P + L WM + + S + ++ + LQN+ GG L Q
Sbjct: 398 RGGGGEQQGLLPLNYPSVGLFPWMQQRLDLSQMGTDNNQQYQAMLAAGLQNIGGGDPLRQ 457
Query: 294 M---PQQNNLQYTGQS------LPQQVPQIDQLAK-LPSTVNPLGSNILPQQPLGDISQQ 343
Q+ + QY QS L Q Q Q ++ L + S LPQQ +
Sbjct: 458 QFVQLQEPHHQYLQQSASHNSDLMLQQQQQQQASRHLMHAQTQIMSENLPQQNM------ 511
Query: 344 SRQNMITQNLPSGPVQAQVLQP-QN 367
RQ + N P+G Q Q+ QP QN
Sbjct: 512 -RQEV--SNQPAGQ-QQQLQQPDQN 532
>TAIR|locus:2174013 [details] [associations]
symbol:ARF2 "auxin response factor 2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009725 "response
to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IMP;TAS] [GO:0009911 "positive regulation of flower
development" evidence=IMP] [GO:0010047 "fruit dehiscence"
evidence=IMP] [GO:0010150 "leaf senescence" evidence=IMP]
[GO:0010227 "floral organ abscission" evidence=IMP] [GO:0008285
"negative regulation of cell proliferation" evidence=IMP]
[GO:0048481 "ovule development" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0009737 "response to abscisic acid
stimulus" evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0042744 "hydrogen peroxide catabolic process"
evidence=RCA] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0009737 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0045892 GO:GO:0008285 GO:GO:0009734 GO:GO:0043565
GO:GO:0003700 GO:GO:0006351 GO:GO:0010150 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0009911 GO:GO:0010047
GO:GO:0010227 GO:GO:0048481 EMBL:AY669787 EMBL:AB016880
EMBL:AF336918 EMBL:AF378862 EMBL:BT000784 EMBL:BT001072
EMBL:AK221252 EMBL:AK221254 EMBL:AK221274 EMBL:AK221277
EMBL:AK221282 EMBL:AK221305 EMBL:U89771 EMBL:AJ441313 EMBL:AJ458328
IPI:IPI00518739 RefSeq:NP_201006.2 RefSeq:NP_851244.1
RefSeq:NP_974980.1 UniGene:At.21704 ProteinModelPortal:Q94JM3
SMR:Q94JM3 DIP:DIP-46014N IntAct:Q94JM3 STRING:Q94JM3 PaxDb:Q94JM3
PRIDE:Q94JM3 EnsemblPlants:AT5G62000.1 EnsemblPlants:AT5G62000.2
EnsemblPlants:AT5G62000.3 GeneID:836321 KEGG:ath:AT5G62000
GeneFarm:3364 TAIR:At5g62000 eggNOG:NOG255064 InParanoid:Q94JM3
OMA:HTESVEC PhylomeDB:Q94JM3 ProtClustDB:CLSN2680590
Genevestigator:Q94JM3 GermOnline:AT5G62000 Uniprot:Q94JM3
Length = 859
Score = 598 (215.6 bits), Expect = 8.7e-61, Sum P(2) = 8.7e-61
Identities = 109/217 (50%), Positives = 147/217 (67%)
Query: 2 QPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQ 61
QPP QEL+A+DLH N W FRHI+RGQP+RHLL +GWS+FVS KRL AGD+ +F+R E +
Sbjct: 198 QPPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGE 257
Query: 62 LLLGIRRANRQPANXXXXXXXXXXMHIGILXXXXXXXXNNSPFTVFYNPRASPSEFVVPL 121
L +G+RRA RQ N MH+G+L + FTV+Y PR SPSEF+VP
Sbjct: 258 LRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVPF 317
Query: 122 AKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWD 181
+Y ++V +N S+GMRF+M FE EE+ +R+ GTI GI + DP RW S+WR+L+V WD
Sbjct: 318 DQYMESVKNNY-SIGMRFKMRFEGEEAPEQRFTGTIVGIEESDPTRWPKSKWRSLKVRWD 376
Query: 182 ESTAGEKRNRVSIWEIEPVTAPFFICPPPFFRSKHPR 218
E+++ + +RVS W++EP AP + P P R K PR
Sbjct: 377 ETSSIPRPDRVSPWKVEPALAPPALSPVPMPRPKRPR 413
Score = 45 (20.9 bits), Expect = 8.7e-61, Sum P(2) = 8.7e-61
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 283 ILQNLNGGLSQMPQQNNLQYTGQSLPQQVPQIDQLA 318
+ N+NG S M Q+NNL P++ L+
Sbjct: 661 LTNNMNGTDSTMSQRNNLNDAAGLTQIASPKVQDLS 696
Score = 45 (20.9 bits), Expect = 8.7e-61, Sum P(2) = 8.7e-61
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 607 GEEVAQSASALLNPSALETMPSNANLVKDLPHKSDVKPSVNISKTQNQGFFTPQTYLNGA 666
G + S LN +A T ++ V+DL +S S N + Q + F T + A
Sbjct: 667 GTDSTMSQRNNLNDAAGLTQIASPK-VQDLSDQSKGSKSTNDHREQGRPFQTNNPHPKDA 725
Query: 667 ATQTD 671
T+T+
Sbjct: 726 QTKTN 730
>TAIR|locus:2175098 [details] [associations]
symbol:ARF4 "auxin response factor 4" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0010158 "abaxial
cell fate specification" evidence=IGI] [GO:0010050 "vegetative
phase change" evidence=IGI] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 EMBL:AB011483 GO:GO:0010050
HOGENOM:HOG000241141 GO:GO:0010158 EMBL:AF013466 EMBL:AF344313
EMBL:AY080832 EMBL:AY113977 IPI:IPI00525857 RefSeq:NP_200853.1
UniGene:At.6797 ProteinModelPortal:Q9ZTX9 SMR:Q9ZTX9 IntAct:Q9ZTX9
STRING:Q9ZTX9 PaxDb:Q9ZTX9 PRIDE:Q9ZTX9 EnsemblPlants:AT5G60450.1
GeneID:836166 KEGG:ath:AT5G60450 GeneFarm:3367 TAIR:At5g60450
eggNOG:NOG277773 InParanoid:Q9ZTX9 OMA:RILYTDS PhylomeDB:Q9ZTX9
ProtClustDB:CLSN2686689 Genevestigator:Q9ZTX9 GermOnline:AT5G60450
Uniprot:Q9ZTX9
Length = 788
Score = 531 (192.0 bits), Expect = 8.4e-53, Sum P(2) = 8.4e-53
Identities = 117/253 (46%), Positives = 150/253 (59%)
Query: 2 QPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQ 61
Q P+QEL+A+DLH W FRHIYRGQP+RHLLTTGWS+FVS K L +GD+VLF+RDE +
Sbjct: 211 QRPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRDEGGE 270
Query: 62 LLLGIRRANRQPANXXXXXXXXXXMHIGILXXXXXXXXNNSPFTVFYNPRASPSEFVVPL 121
L LGIRRA R P N IL S F VFY+PRA+ +EFV+P
Sbjct: 271 LRLGIRRAAR-PRNGLPDSIIEKNSCSNILSLVANAVSTKSMFHVFYSPRATHAEFVIPY 329
Query: 122 AKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWD 181
KY ++ S + +G RFRM FE ++S RR G +TG+ DLDP RW NS+WR L V WD
Sbjct: 330 EKYITSIRS-PVCIGTRFRMRFEMDDSPERRCAGVVTGVCDLDPYRWPNSKWRCLLVRWD 388
Query: 182 ESTAGEKRNRVSIWEIEP-VTAPFF-ICPPPFFRSKHPRQADDDASDLDNVFKRTMPWIG 239
ES + + RVS WEI+P V+ P I P R K P D + N + ++
Sbjct: 389 ESFVSDHQERVSPWEIDPSVSLPHLSIQSSP--RPKRPWAGLLDTTPPGNPITKRGGFLD 446
Query: 240 DDFGVKDSQSLPG 252
+ V+ S+ L G
Sbjct: 447 FEESVRPSKVLQG 459
Score = 39 (18.8 bits), Expect = 8.4e-53, Sum P(2) = 8.4e-53
Identities = 6/37 (16%), Positives = 22/37 (59%)
Query: 694 NNSLSYNPQSTLRDASQDGEVPVDPRSNIPYGANIDG 730
+ ++++ ++ DA +G +P + +++P+ ++ G
Sbjct: 592 SRAINFGEETRKFDAQNEGGLPNNVTADLPFKIDMMG 628
>TAIR|locus:2138096 [details] [associations]
symbol:ARF9 "auxin response factor 9" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;TAS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 HOGENOM:HOG000241141
EMBL:AF082176 EMBL:AC002343 EMBL:AL078468 EMBL:AL161560
EMBL:AF344312 EMBL:AK221865 EMBL:AK228263 IPI:IPI00519218
IPI:IPI00657180 PIR:T08917 RefSeq:NP_001031706.1 RefSeq:NP_194129.1
UniGene:At.3396 ProteinModelPortal:Q9XED8 SMR:Q9XED8 IntAct:Q9XED8
PaxDb:Q9XED8 PRIDE:Q9XED8 EnsemblPlants:AT4G23980.1 GeneID:828498
KEGG:ath:AT4G23980 GeneFarm:3373 TAIR:At4g23980 eggNOG:NOG300390
InParanoid:Q9XED8 OMA:YAQITLI PhylomeDB:Q9XED8
ProtClustDB:CLSN2685375 Genevestigator:Q9XED8 Uniprot:Q9XED8
Length = 638
Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
Identities = 112/279 (40%), Positives = 160/279 (57%)
Query: 2 QPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQ 61
Q P QEL+A D+H W F+HI+RGQP+RHLLTTGWS FV+ KRL AGD+ +F+R E +
Sbjct: 150 QTPTQELVAEDVHGYQWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGE 209
Query: 62 LLLGIRRANRQPANXXXXXXXXXXMHIGILXXXXXXXXNNSPFTVFYNPRASPSEFVVPL 121
L +G+RRAN Q ++ MH+G+L + F V+Y PR S +F++ L
Sbjct: 210 LRVGVRRANLQQSSMPSSVISSHSMHLGVLATARHATQTKTMFIVYYKPRTS--QFIISL 267
Query: 122 AKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWD 181
KY +A+ SN+ S+GMRF+M FE E+S RRY GT+ G+ D P WK+S+WR L+V WD
Sbjct: 268 NKYLEAM-SNKFSVGMRFKMRFEGEDSPERRYSGTVIGVKDCSP-HWKDSKWRCLEVHWD 325
Query: 182 ESTAGEKRNRVSIWEIEPVTAPFFICPPPFFRSKHPRQADDDASDLDNVFKRTMPWIGDD 241
E + + N+VS WEIEP + ++K PRQ + S LD + W
Sbjct: 326 EPASISRPNKVSPWEIEPFVNSENVPKSVMLKNKRPRQVSE-VSALDVGITASNLW--SS 382
Query: 242 FGVKDSQSLPGLSLVQWMNMQQNPSLAN--AMQSSYMHS 278
+ + QW + QQ AN A +S ++++
Sbjct: 383 VLTQPHEFAQSCITSQWSSPQQCHRDANEDAKKSDWLNN 421
>TAIR|locus:2025991 [details] [associations]
symbol:ARF1 "auxin response factor 1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA;IDA;IPI] [GO:0005634 "nucleus" evidence=ISM;IEA;ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;TAS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;TAS] [GO:0010150 "leaf
senescence" evidence=IGI] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007267 "cell-cell signaling" evidence=RCA] [GO:0009616 "virus
induced gene silencing" evidence=RCA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0016246
"RNA interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0009733
"response to auxin stimulus" evidence=IEP] InterPro:IPR003311
InterPro:IPR003340 InterPro:IPR010525 InterPro:IPR011525
Pfam:PF02309 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0045892 GO:GO:0009733
GO:GO:0009734 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0010150 EMBL:AC007258 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:U83245 EMBL:AY133723 EMBL:BT002748
IPI:IPI00518211 IPI:IPI00520405 PIR:D96621 RefSeq:NP_001031208.1
RefSeq:NP_176184.1 RefSeq:NP_849830.1 UniGene:At.74832
ProteinModelPortal:Q8L7G0 SMR:Q8L7G0 IntAct:Q8L7G0 STRING:Q8L7G0
EnsemblPlants:AT1G59750.1 EnsemblPlants:AT1G59750.3 GeneID:842268
KEGG:ath:AT1G59750 GeneFarm:3363 TAIR:At1g59750 eggNOG:NOG257828
HOGENOM:HOG000241141 InParanoid:Q8L7G0 KO:K14486 OMA:QMPSFNL
PhylomeDB:Q8L7G0 ProtClustDB:CLSN2679699 Genevestigator:Q8L7G0
GermOnline:AT1G59750 Uniprot:Q8L7G0
Length = 665
Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
Identities = 102/219 (46%), Positives = 143/219 (65%)
Query: 2 QPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQ 61
QPP QEL+A DLH++ W FRHI+RGQP+RHLLTTGWS+FVS K+L AGD+ +F+R E ++
Sbjct: 158 QPPWQELVATDLHNSEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENEE 217
Query: 62 LLLGIRRANRQPANXXXXXXXXXXMHIGILXXXXXXXXNNSPFTVFYNPRASPSEFVVPL 121
L +G+RR RQ N MHIG+L + F+VFY PR S SEF+V +
Sbjct: 218 LRVGVRRHMRQQTNIPSSVISSHSMHIGVLATAAHAITTGTIFSVFYKPRTSRSEFIVSV 277
Query: 122 AKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWD 181
+Y +A + ++S+GMRF+M FE EE+ +R+ GTI G+ + W +S+WR+L+V WD
Sbjct: 278 NRYLEA-KTQKLSVGMRFKMRFEGEEAPEKRFSGTIVGVQENKSSVWHDSEWRSLKVQWD 336
Query: 182 ESTAGEKRNRVSIWEIEPVTAPFFIC--PPPFFRSKHPR 218
E ++ + RVS WE+EP+ A P P R+K PR
Sbjct: 337 EPSSVFRPERVSPWELEPLVANSTPSSQPQPPQRNKRPR 375
>TAIR|locus:2039124 [details] [associations]
symbol:ARF11 "auxin response factor 11" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 GO:GO:0009506
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 EMBL:AC006526 EMBL:AC006418
HOGENOM:HOG000241141 EMBL:AY669791 EMBL:AK229757 EMBL:BX837073
EMBL:AK229924 IPI:IPI00544804 IPI:IPI00547357 IPI:IPI00656718
PIR:A84904 RefSeq:NP_001031548.1 RefSeq:NP_182176.2
RefSeq:NP_973701.1 UniGene:At.36497 ProteinModelPortal:Q9ZPY6
SMR:Q9ZPY6 PRIDE:Q9ZPY6 EnsemblPlants:AT2G46530.3 GeneID:819264
KEGG:ath:AT2G46530 GeneFarm:3388 TAIR:At2g46530 eggNOG:NOG303653
InParanoid:Q9ZPY6 OMA:MFEIEGE PhylomeDB:Q9ZPY6
ProtClustDB:CLSN2681223 ArrayExpress:Q9ZPY6 Genevestigator:Q9ZPY6
Uniprot:Q9ZPY6
Length = 622
Score = 488 (176.8 bits), Expect = 6.8e-49, Sum P(2) = 6.8e-49
Identities = 98/210 (46%), Positives = 131/210 (62%)
Query: 2 QP-PAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQ 60
QP P QEL+ARDLH W F+HI+RGQP+RHLLTTGWS FV+ KRL AGD+ +F+R E
Sbjct: 178 QPTPTQELVARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGETG 237
Query: 61 QLLLGIRRANRQPANXXXXXXXXXXMHIGILXXXXXXXXNNSPFTVFYNPRASPSEFVVP 120
L +G+RR +Q + M +G+L + F VFY PR S +F++
Sbjct: 238 DLRVGVRRLAKQQSTMPASVISSQSMRLGVLATASHAVTTTTIFVVFYKPRIS--QFIIS 295
Query: 121 LAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGW 180
+ KY A+ N SLGMR+RM FE EES R + GTI G DL +W S+WR+LQ+ W
Sbjct: 296 VNKYMMAM-KNGFSLGMRYRMRFEGEESPERIFTGTIIGSGDLSS-QWPASKWRSLQIQW 353
Query: 181 DESTAGEKRNRVSIWEIEPVTAPFFICPPP 210
DE ++ ++ N+VS WEIEP + P + P P
Sbjct: 354 DEPSSIQRPNKVSPWEIEPFS-PSALTPTP 382
Score = 39 (18.8 bits), Expect = 6.8e-49, Sum P(2) = 6.8e-49
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 774 ELSSSIVSQSFGVP-DMAFNSIDSTINDSSFLNGGPWAPPPQFPQRMRTYTK 824
+L+S S + +P D S+DS I+DS+ P + Q+ +T T+
Sbjct: 462 DLTSKPASAT--IPHDKQLISVDSNISDSTTKCQDPNSSNSPKEQKQQTSTR 511
>TAIR|locus:2076765 [details] [associations]
symbol:ARF18 "auxin response factor 18" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009725 "response
to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AL132959 HOGENOM:HOG000241141 EMBL:AF334717
EMBL:AY059746 EMBL:AY070463 EMBL:AY091392 EMBL:AK229945
IPI:IPI00524053 PIR:T47975 RefSeq:NP_567119.1 UniGene:At.17167
UniGene:At.69165 ProteinModelPortal:Q9C5W9 SMR:Q9C5W9 IntAct:Q9C5W9
EnsemblPlants:AT3G61830.1 GeneID:825356 KEGG:ath:AT3G61830
GeneFarm:3414 TAIR:At3g61830 eggNOG:NOG268528 InParanoid:Q9C5W9
OMA:RISQFIV PhylomeDB:Q9C5W9 ProtClustDB:CLSN2917487
Genevestigator:Q9C5W9 GermOnline:AT3G61830 Uniprot:Q9C5W9
Length = 602
Score = 482 (174.7 bits), Expect = 4.9e-48, Sum P(2) = 4.9e-48
Identities = 98/206 (47%), Positives = 125/206 (60%)
Query: 4 PAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLL 63
P QEL+ RDLH W F+HI+RGQP+RHLLTTGWS FVS KRL AGD+ +F+R E L
Sbjct: 164 PTQELVTRDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVSSKRLVAGDAFVFLRGENGDLR 223
Query: 64 LGIRRANRQPANXXXXXXXXXXMHIGILXXXXXXXXNNSPFTVFYNPRASPSEFVVPLAK 123
+G+RR R + MH+G+L + F VFY PR S +F+V + K
Sbjct: 224 VGVRRLARHQSTMPTSVISSQSMHLGVLATASHAVRTTTIFVVFYKPRIS--QFIVGVNK 281
Query: 124 YYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDES 183
Y +A+ + SLG RFRM FE EES R + GTI G DL +W S+WR+LQV WDE
Sbjct: 282 YMEAI-KHGFSLGTRFRMRFEGEESPERIFTGTIVGSGDLSS-QWPASKWRSLQVQWDEP 339
Query: 184 TAGEKRNRVSIWEIEPVTAPFFICPP 209
T ++ ++VS WEIEP A I P
Sbjct: 340 TTVQRPDKVSPWEIEPFLATSPISTP 365
Score = 37 (18.1 bits), Expect = 4.9e-48, Sum P(2) = 4.9e-48
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 265 PSLANAMQSSYMHSLPGSILQNLNGGL 291
PS+ S+++SLP S ++N L
Sbjct: 381 PSVKTPAPPSFLYSLPQS-QDSINASL 406
>TAIR|locus:2057609 [details] [associations]
symbol:ETT "ETTIN" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009725 "response to hormone
stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;TAS] [GO:0009850 "auxin
metabolic process" evidence=TAS] [GO:0010158 "abaxial cell fate
specification" evidence=IGI] [GO:0010050 "vegetative phase change"
evidence=IGI;RCA;IMP] [GO:0007389 "pattern specification process"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0009887 "organ morphogenesis" evidence=RCA]
[GO:0010051 "xylem and phloem pattern formation" evidence=RCA]
[GO:0048438 "floral whorl development" evidence=RCA] [GO:0048439
"flower morphogenesis" evidence=RCA] [GO:0048519 "negative
regulation of biological process" evidence=RCA] [GO:0009733
"response to auxin stimulus" evidence=ISS] InterPro:IPR003340
InterPro:IPR010525 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
SMART:SM01019 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0009733 GO:GO:0009734 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0009850 GO:GO:0010050 HOGENOM:HOG000241141
KO:K14486 EMBL:U89296 EMBL:AF007788 EMBL:U78721 EMBL:AF336917
EMBL:AF360313 EMBL:AY056365 EMBL:AB199791 IPI:IPI00527337
PIR:E84750 PIR:T03278 RefSeq:NP_180942.1 UniGene:At.10360
ProteinModelPortal:O23661 SMR:O23661 IntAct:O23661 STRING:O23661
EnsemblPlants:AT2G33860.1 GeneID:817956 KEGG:ath:AT2G33860
GeneFarm:3366 TAIR:At2g33860 eggNOG:NOG315820 InParanoid:O23661
OMA:HESNNES PhylomeDB:O23661 ProtClustDB:CLSN2913114
Genevestigator:O23661 GermOnline:AT2G33860 GO:GO:0010158
Uniprot:O23661
Length = 608
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 95/199 (47%), Positives = 126/199 (63%)
Query: 2 QP-PAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQ 60
QP P+QEL+ARDLH W FRHIYRGQP+RHLLTTGWS FV+ K+L +GD+VLF+R +
Sbjct: 192 QPRPSQELLARDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDG 251
Query: 61 QLLLGIRRANRQPANXXXXXXXXXXMHIGILXXXXXXXXNNSPFTVFYNPRASPSEFVVP 120
+L LG+RRA++ M+ +S F++ YNP+AS S F++P
Sbjct: 252 KLRLGVRRASQIEGTAALSAQYNQNMNHNNFSEVAHAISTHSVFSISYNPKASWSNFIIP 311
Query: 121 LAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGW 180
K+ K V +GMRF+ E+E++ RR G I+GISDLDP+RW S+WR L V W
Sbjct: 312 APKFLKVV-DYPFCIGMRFKARVESEDASERRSPGIISGISDLDPIRWPGSKWRCLLVRW 370
Query: 181 DESTAGEKRNRVSIWEIEP 199
D+ A + RVS WEIEP
Sbjct: 371 DDIVANGHQQRVSPWEIEP 389
>TAIR|locus:2036288 [details] [associations]
symbol:ARF22 "auxin response factor 22" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 ProtClustDB:CLSN2681760
EMBL:AC023913 EMBL:AY669796 IPI:IPI00545778 PIR:C86468
RefSeq:NP_174699.2 UniGene:At.51186 ProteinModelPortal:Q9C8N7
SMR:Q9C8N7 IntAct:Q9C8N7 EnsemblPlants:AT1G34390.1 GeneID:840341
KEGG:ath:AT1G34390 GeneFarm:3426 TAIR:At1g34390 OMA:NITTNAN
PhylomeDB:Q9C8N7 Genevestigator:Q9C8N7 Uniprot:Q9C8N7
Length = 598
Score = 481 (174.4 bits), Expect = 8.3e-46, P = 8.3e-46
Identities = 101/255 (39%), Positives = 141/255 (55%)
Query: 2 QP-PAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQ 60
QP P QEL+A DLH N W F H YRG P+RHLLTTGW+ F + K+L AGD ++F+R E
Sbjct: 157 QPLPTQELLATDLHGNQWRFNHNYRGTPQRHLLTTGWNAFTTSKKLVAGDVIVFVRGETG 216
Query: 61 QLLLGIRRANRQPANXXXXXXXXXXMHIGILXXXXXXXXNNSPFTVFYNPRASPSEFVVP 120
+L +GIRRA Q N M G++ N F V Y PR+S +F+V
Sbjct: 217 ELRVGIRRAGHQQGNIPSSIISIESMRHGVIASAKHAFDNQCMFIVVYKPRSS--QFIVS 274
Query: 121 LAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGW 180
K+ AV+ N+ ++G RF M FE ++ RRY GTI G+SD P WK S+WRNL+V W
Sbjct: 275 YDKFLDAVN-NKFNVGSRFTMRFEGDDFSERRYFGTIIGVSDFSP-HWKCSEWRNLEVQW 332
Query: 181 DESTAGEKRNRVSIWEIEPVTAPFFICPPPFFRSKHPRQADDDASDLDNVFKRTMPWIGD 240
DE + + N+VS WEIE + + P ++K R+ ++ S ++ + G
Sbjct: 333 DEFASFSRPNKVSPWEIEHLMPALNVPRPSLLKNKRLREVNEIGSSSSHLLPPILTQ-GQ 391
Query: 241 DFGVKDSQSLPGLSL 255
+ G S +SL
Sbjct: 392 EIGQLSVASPMNISL 406
>TAIR|locus:2009298 [details] [associations]
symbol:ARF21 "auxin response factor 21" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 eggNOG:NOG264447
ProtClustDB:CLSN2681760 EMBL:AC023279 EMBL:AC023913 IPI:IPI00539451
PIR:E86468 RefSeq:NP_174701.2 UniGene:At.51930
ProteinModelPortal:Q9C8N9 SMR:Q9C8N9 EnsemblPlants:AT1G34410.1
GeneID:840344 KEGG:ath:AT1G34410 GeneFarm:3425 TAIR:At1g34410
PhylomeDB:Q9C8N9 Genevestigator:Q9C8N9 GermOnline:AT1G34410
Uniprot:Q9C8N9
Length = 606
Score = 469 (170.2 bits), Expect = 2.3e-44, P = 2.3e-44
Identities = 112/333 (33%), Positives = 167/333 (50%)
Query: 2 QP-PAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQ 60
QP PAQE++A DLHDN W FRH YRG P+RH LTTGW+ F++ K+L GD ++F+R E
Sbjct: 159 QPLPAQEILAIDLHDNQWRFRHNYRGTPQRHSLTTGWNEFITSKKLVKGDVIVFVRGETG 218
Query: 61 QLLLGIRRANRQPANXXXXXXXXXXMHIGILXXXXXXXXNNSPFTVFYNPRASPSEFVVP 120
+L +GIRRA Q N M G++ N F V Y PR+S +F+V
Sbjct: 219 ELRVGIRRARHQQGNIPSSIVSIDCMRHGVIASAKHAFDNQCIFIVVYKPRSS--QFIVS 276
Query: 121 LAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGW 180
K+ AV+ N+ ++G RF M FE ++ RRY GTI G+SD P WK S+WR+L+V W
Sbjct: 277 YDKFLDAVN-NKFNVGSRFTMRFEGDDFSERRYFGTIIGVSDFSP-HWKCSEWRSLEVQW 334
Query: 181 DESTAGEKRNRVSIWEIEPVTAPFFICPPPFFRSKHPRQADDDASDLDNVFKRTMPWIGD 240
DE + + N+VS WEIE + + ++K R+ ++ S ++ + G
Sbjct: 335 DEFASFSRPNKVSPWEIEHLVPALNVPRSSLLKNKRLREVNEFGSSSSHLLPPILTQ-GQ 393
Query: 241 DFGVKDSQSLPGLSLV--QWMNMQQNPSLANAMQSSYMHSLPGSILQNLNGGLSQMPQQN 298
+ G S +SL NPS + S + +P N N + ++N
Sbjct: 394 EIGQLSVASPMNISLRYRDTTEAAMNPS--RLLMSYPVQPMPKL---NYNNQMVTQIEEN 448
Query: 299 NLQYTGQSLPQQVPQIDQLAKLPSTVNPLGSNI 331
G + +D + + +GS+I
Sbjct: 449 ITTKAGTNFRLFGVTLDTPPMIKDPIKQIGSDI 481
>TAIR|locus:2014731 [details] [associations]
symbol:ARF14 "auxin response factor 14" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 eggNOG:NOG264447
ProtClustDB:CLSN2681760 EMBL:AC007887 IPI:IPI00548517 PIR:G86476
RefSeq:NP_174786.1 UniGene:At.39556 ProteinModelPortal:Q9LQE8
SMR:Q9LQE8 IntAct:Q9LQE8 PRIDE:Q9LQE8 EnsemblPlants:AT1G35540.1
GeneID:840450 KEGG:ath:AT1G35540 GeneFarm:3394 TAIR:At1g35540
OMA:DITEDAM PhylomeDB:Q9LQE8 Genevestigator:Q9LQE8 Uniprot:Q9LQE8
Length = 605
Score = 462 (167.7 bits), Expect = 1.5e-43, P = 1.5e-43
Identities = 101/276 (36%), Positives = 153/276 (55%)
Query: 2 QP-PAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQ 60
QP P QE++A DLH N W FRHIYRG +RHLLT GW+ F + K+L GD ++F+R E
Sbjct: 159 QPLPTQEILAIDLHGNQWRFRHIYRGTAQRHLLTIGWNAFTTSKKLVEGDVIVFVRGETG 218
Query: 61 QLLLGIRRANRQPANXXXXXXXXXXMHIGILXXXXXXXXNNSPFTVFYNPRASPSEFVVP 120
+L +GIRRA Q N M GI+ N F V Y PR+S +F+V
Sbjct: 219 ELRVGIRRAGHQQGNIPSSIVSIESMRHGIIASAKHAFDNQCMFIVVYKPRSS--QFIVS 276
Query: 121 LAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGW 180
K+ V+ N+ ++G RF M FE ++ RR GTI G+SD P WK S+WR+L+V W
Sbjct: 277 YDKFLDVVN-NKFNVGSRFTMRFEGDDFSERRSFGTIIGVSDFSP-HWKCSEWRSLEVQW 334
Query: 181 DESTAGEKRNRVSIWEIEPVTAPFFICPPPFFRSKHPRQADDDASDLDNVFKRTMPWIGD 240
DE + + N+VS W+IE +T + F ++K R+ ++ S ++ T+ G
Sbjct: 335 DEFASFPRPNQVSPWDIEHLTPWSNVSRSSFLKNKRSREVNEIGSSSSHLLPPTLTQ-GQ 393
Query: 241 DFGVKDSQSLP-GLSLVQWMNMQQNPSLANAMQSSY 275
+ G + S + P +SL ++ ++ ++ + + SY
Sbjct: 394 EIG-QQSMATPMNISL-RYRDITEDAMTPSRLLMSY 427
>TAIR|locus:2026145 [details] [associations]
symbol:ARF12 "auxin response factor 12" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009725 "response
to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 EMBL:AY669792 EMBL:AC007454
IPI:IPI00544760 PIR:C86467 RefSeq:NP_174691.2 UniGene:At.51185
ProteinModelPortal:Q9XID4 SMR:Q9XID4 IntAct:Q9XID4
EnsemblPlants:AT1G34310.1 GeneID:840331 KEGG:ath:AT1G34310
GeneFarm:3390 TAIR:At1g34310 eggNOG:NOG264447 PhylomeDB:Q9XID4
ProtClustDB:CLSN2681760 ArrayExpress:Q9XID4 Genevestigator:Q9XID4
GermOnline:AT1G34310 Uniprot:Q9XID4
Length = 593
Score = 454 (164.9 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 126/361 (34%), Positives = 183/361 (50%)
Query: 2 QP-PAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQ 60
QP PAQEL+A DLH N W F H YRG P+RHLLTTGW+ F + K+L AGD ++F+R E
Sbjct: 159 QPLPAQELLAIDLHGNQWRFNHNYRGTPQRHLLTTGWNAFTTSKKLVAGDVIVFVRGETG 218
Query: 61 QLLLGIRRANRQPANXXXXXXXXXXMHIGILXXXXXXXXNNSPFTVFYNPRASPSEFVVP 120
+L +GIRRA Q N M G++ N FTV Y PR+S +F+V
Sbjct: 219 ELRVGIRRARHQQGNIPSSIVSIDCMRHGVVASAKHAFDNQCMFTVVYKPRSS--KFIVS 276
Query: 121 LAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGW 180
K+ AV+ N+ ++G RF M E ++ RR GTI G+SD P WK S+WR+L+V W
Sbjct: 277 YDKFLDAVN-NKFNVGSRFTMRLEGDDFSERRCFGTIIGVSDFSP-HWKCSEWRSLEVQW 334
Query: 181 DESTAGEKRNRVSIWEIEPVTAPFFICPPPFF-RSKHPRQADDDASDLDNVFKRTMPWIG 239
DE T+ +VS W+IE + P P F ++K R+ ++ S ++ +P I
Sbjct: 335 DEFTSFPGPKKVSPWDIEHLM-PAINVPRSFLLKNKRLREVNEIGSSSSHL----LPPIL 389
Query: 240 DDFGVKDSQSLPGLSLVQWMN--MQQNPSLANAMQ-SSYMHSLPGSILQNLNGGLSQMP- 295
G ++ Q LS+ MN ++ + +AM S + S P + LN +QM
Sbjct: 390 TQ-GQENEQ----LSVASPMNISLRYRDATEDAMNPSKLLMSYPVQPMPKLNYN-NQMVT 443
Query: 296 --QQNNLQYTGQSLPQQVPQIDQLAKLPSTVNPLGSNI--LPQQPLGDISQQSRQNMITQ 351
++N TG + +D + + +GS I L + +SQ R Q
Sbjct: 444 EMEENITTKTGTNFRLFGVTLDTPPVIKDPIEEIGSEISKLTEGKKFGLSQTLRSPTEIQ 503
Query: 352 N 352
N
Sbjct: 504 N 504
>TAIR|locus:2206717 [details] [associations]
symbol:ARF20 "auxin response factor 20" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AC069160 HOGENOM:HOG000241141
eggNOG:NOG264447 ProtClustDB:CLSN2681760 EMBL:AY669795
IPI:IPI00656906 PIR:D86473 RefSeq:NP_174758.2 UniGene:At.51187
ProteinModelPortal:Q9C7I9 SMR:Q9C7I9 IntAct:Q9C7I9 PaxDb:Q9C7I9
PRIDE:Q9C7I9 EnsemblPlants:AT1G35240.1 GeneID:840413
KEGG:ath:AT1G35240 GeneFarm:3424 TAIR:At1g35240 PhylomeDB:Q9C7I9
Genevestigator:Q9C7I9 GermOnline:AT1G35240 Uniprot:Q9C7I9
Length = 590
Score = 454 (164.9 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 88/224 (39%), Positives = 128/224 (57%)
Query: 4 PAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLL 63
PAQEL+A+DLH N W FRH YRG P+RH LTTGW+ F + K+L GD ++F+R E +L
Sbjct: 158 PAQELLAKDLHGNQWRFRHSYRGTPQRHSLTTGWNEFTTSKKLVKGDVIVFVRGETGELR 217
Query: 64 LGIRRANRQPANXXXXXXXXXXMHIGILXXXXXXXXNNSPFTVFYNPRASPSEFVVPLAK 123
+GIRRA Q N M G++ N F V Y P S+F+V K
Sbjct: 218 VGIRRARHQQGNIPSSIVSIDCMRHGVIASAKHALDNQCIFIVVYKPSIRSSQFIVSYDK 277
Query: 124 YYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDES 183
+ A++ N+ +G RF M FE ++ RRY GTI G++D P WK S+WR+L+V WDE
Sbjct: 278 FLDAMN-NKFIVGSRFTMRFEGDDFSERRYFGTIIGVNDFSP-HWKCSEWRSLEVQWDEF 335
Query: 184 TAGEKRNRVSIWEIEPVTAPFFICPPPFFRSKHPRQADDDASDL 227
+ + N+VS WEIE + + + ++K R+ ++ ++
Sbjct: 336 ASFSRPNKVSPWEIEHLMSALNVPRSSLLKNKRLREVNEFGQEI 379
>TAIR|locus:2057517 [details] [associations]
symbol:ARF10 "auxin response factor 10" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0035198 "miRNA binding" evidence=ISS] [GO:0007389 "pattern
specification process" evidence=IDA] [GO:0048829 "root cap
development" evidence=IGI;IMP] [GO:0051301 "cell division"
evidence=IGI] [GO:0009734 "auxin mediated signaling pathway"
evidence=IMP] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=IMP] [GO:0009743 "response to carbohydrate
stimulus" evidence=IMP] [GO:0010154 "fruit development"
evidence=IMP] [GO:0031540 "regulation of anthocyanin biosynthetic
process" evidence=IMP] [GO:0048366 "leaf development" evidence=IMP]
[GO:0048441 "petal development" evidence=IMP] [GO:0048442 "sepal
development" evidence=IMP] [GO:0048589 "developmental growth"
evidence=IMP] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009738
GO:GO:0009734 GO:GO:0051301 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0048829 GO:GO:0048589 GO:GO:0009743
GO:GO:0048441 GO:GO:0048442 GO:GO:0010154 GO:GO:0035198
GO:GO:0048366 GO:GO:0007389 EMBL:AF099735 EMBL:AC006283
EMBL:AF325073 EMBL:AF336919 EMBL:EU550097 EMBL:EU550098
EMBL:EU550099 EMBL:EU550100 EMBL:EU550101 EMBL:EU550102
EMBL:EU550103 EMBL:EU550104 EMBL:EU550105 EMBL:EU550106
EMBL:EU550107 EMBL:EU550108 EMBL:EU550109 EMBL:EU550110
EMBL:EU550111 EMBL:EU550112 EMBL:EU550113 EMBL:EU550114
EMBL:EU550115 EMBL:EU550116 EMBL:EU550117 EMBL:EU550118
EMBL:EU550119 EMBL:AK228534 IPI:IPI00530405 PIR:G84683
RefSeq:NP_180402.1 UniGene:At.13730 ProteinModelPortal:Q9SKN5
SMR:Q9SKN5 IntAct:Q9SKN5 STRING:Q9SKN5 PRIDE:Q9SKN5
EnsemblPlants:AT2G28350.1 GeneID:817382 KEGG:ath:AT2G28350
GeneFarm:3383 TAIR:At2g28350 eggNOG:NOG315592 InParanoid:Q9SKN5
OMA:ERESGRC PhylomeDB:Q9SKN5 ProtClustDB:CLSN2913131
ArrayExpress:Q9SKN5 Genevestigator:Q9SKN5 GermOnline:AT2G28350
GO:GO:0031540 Uniprot:Q9SKN5
Length = 693
Score = 245 (91.3 bits), Expect = 2.4e-34, Sum P(3) = 2.4e-34
Identities = 42/70 (60%), Positives = 54/70 (77%)
Query: 2 QPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQ 61
+PP Q ++A+D+H W FRHIYRG P+RHLLTTGWS FV+ K+L AGDS++F+R E
Sbjct: 149 EPPVQTVIAKDIHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDSIVFLRSESGD 208
Query: 62 LLLGIRRANR 71
L +GIRRA R
Sbjct: 209 LCVGIRRAKR 218
Score = 218 (81.8 bits), Expect = 2.4e-34, Sum P(3) = 2.4e-34
Identities = 75/252 (29%), Positives = 103/252 (40%)
Query: 54 FIRDEKQQLLLGIRRANRQPANXXXXXXXXXXMHIGILXXXXXXXXNNSPFTVFYNPRAS 113
F+RD++ ++ N + + + F V Y PRAS
Sbjct: 237 FLRDDESTTTTSKLMMMKRNGNNDGNAAATGRVRVEAVAEAVARAACGQAFEVVYYPRAS 296
Query: 114 PSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRR-YMGTITGISDLDPVRWKNSQ 172
EF V A A+ S GMRF+M FETE+S +MGT++ + DP+RW NS
Sbjct: 297 TPEFCVKAADVRSAMRIRWCS-GMRFKMAFETEDSSRISWFMGTVSAVQVADPIRWPNSP 355
Query: 173 WRNLQVGWDESTAGEKRNRVSIWEIEPVTAPFFICPPPFFRSKHPRQADDDASDLDNVFK 232
WR LQV WDE + RVS W +E V+ I PF PR+ + F
Sbjct: 356 WRLLQVAWDEPDLLQNVKRVSPWLVELVSNMPTIHLSPF----SPRKKIRIPQPFEFPFH 411
Query: 233 RT-MPWIGDDFGVKDSQSLPGLSLVQWMNMQQN-PS-LANAMQSSYMHSLPG-SILQNLN 288
T P F G S+ N N P+ + A Q+ + P S+L +LN
Sbjct: 412 GTKFPIFSPGFANNGG----GESMCYLSNDNNNAPAGIQGARQAQQLFGSPSPSLLSDLN 467
Query: 289 GGLSQMPQQNNL 300
LS N L
Sbjct: 468 --LSSYTGNNKL 477
Score = 37 (18.1 bits), Expect = 2.4e-34, Sum P(3) = 2.4e-34
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 753 SNNISSGAMLANYENSKDAQQELSSSIVSQS--FGVP 787
SNNIS + N +D ++ + S Q FG P
Sbjct: 502 SNNISCSLTMGNPAMVQDKKKSVGSVKTHQFVLFGQP 538
>TAIR|locus:2008991 [details] [associations]
symbol:ARF13 "AUXIN RESPONSE FACTOR 13" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006863 "purine nucleobase transport" evidence=RCA]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GO:GO:0005634 GO:GO:0009734 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 IPI:IPI00938986 RefSeq:NP_001154393.1
UniGene:At.51184 ProteinModelPortal:F4HT52 SMR:F4HT52 PRIDE:F4HT52
EnsemblPlants:AT1G34170.3 GeneID:840316 KEGG:ath:AT1G34170
OMA:PEFCNMA ArrayExpress:F4HT52 Uniprot:F4HT52
Length = 546
Score = 206 (77.6 bits), Expect = 3.4e-26, Sum P(2) = 3.4e-26
Identities = 41/113 (36%), Positives = 59/113 (52%)
Query: 2 QP-PAQELMARDLHDNIWTFRHIYRGQPKRHLLTTG--WSLFVSGKRLFAGDSVLFIRDE 58
QP Q L+A+DL+ W+F+H++RG P+RH+ T+G WS+F + KRL GD + +R E
Sbjct: 157 QPISTQNLVAKDLYGQEWSFKHVFRGTPQRHMFTSGGGWSVFATTKRLIVGDIFVLLRGE 216
Query: 59 KQQLLLGIRRANRQPANXXXXXXXXXXMHIGILXXXXXXXXNNSPFTVFYNPR 111
+L GIRRA Q + M G++ F V Y PR
Sbjct: 217 NGELRFGIRRAKHQQGHIPSSVISANCMQHGVIASVVNAFKTKCMFNVVYKPR 269
Score = 171 (65.3 bits), Expect = 3.4e-26, Sum P(2) = 3.4e-26
Identities = 44/161 (27%), Positives = 78/161 (48%)
Query: 140 RMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEP 199
RM FE ++ +RY GTI G++D+ P WK+S+WR+L+V WDE + + N+VS W+IE
Sbjct: 269 RMQFEGKDFSEKRYDGTIIGVNDMSP-HWKDSEWRSLKVQWDELSPFLRPNQVSPWDIEH 327
Query: 200 VTAPFFICPPPFFRSKHPRQADDDASDLDNVFKRTMPWIGDDFGVKDSQSLPGLSLVQWM 259
+ I + KH Q ++ + L N+ W + G + S + +
Sbjct: 328 LIPSSDISQSSLKKKKHWLQLNEIGATLSNL------WTCQEIGQRSMNSPISVPEFSYP 381
Query: 260 NMQQNPSLANAMQSSYMHSLPGSILQNLNGGLSQMPQQNNL 300
N ++ + + + HSL +N N P++ ++
Sbjct: 382 NAIEDSKFLSGLLLN--HSLLAIPNENYNSDQMIQPRKEDI 420
Score = 46 (21.3 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 759 GAMLANYENSKDAQQELSSSIVSQSFGVPDMAFNSIDSTINDSSFLNG 806
GA L+N ++ Q +S +S VP+ ++ + I DS FL+G
Sbjct: 352 GATLSNLWTCQEIGQRSMNSPIS----VPEFSY---PNAIEDSKFLSG 392
>TAIR|locus:2029436 [details] [associations]
symbol:ARF17 "auxin response factor 17" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0009653 "anatomical structure morphogenesis"
evidence=IMP] [GO:0009734 "auxin mediated signaling pathway"
evidence=TAS] [GO:0048830 "adventitious root development"
evidence=IMP] [GO:0009555 "pollen development" evidence=IMP]
InterPro:IPR003340 InterPro:IPR010525 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0009555
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0048830 GO:GO:0009653
EMBL:AC009243 EMBL:AC012193 EMBL:AY056184 EMBL:BT002749
EMBL:EU550144 EMBL:EU550145 EMBL:EU550146 EMBL:EU550147
EMBL:EU550148 EMBL:EU550149 EMBL:EU550150 EMBL:EU550151
EMBL:EU550152 EMBL:EU550153 EMBL:EU550154 EMBL:EU550155
EMBL:EU550156 EMBL:EU550157 EMBL:EU550158 EMBL:EU550159
EMBL:EU550160 EMBL:EU550161 EMBL:EU550162 EMBL:EU550163
EMBL:EU550164 EMBL:EU550165 EMBL:EU550166 EMBL:EU550167
IPI:IPI00522722 PIR:D96808 RefSeq:NP_565161.1 UniGene:At.26363
ProteinModelPortal:Q84WU6 SMR:Q84WU6 IntAct:Q84WU6 STRING:Q84WU6
PRIDE:Q84WU6 EnsemblPlants:AT1G77850.1 GeneID:844120
KEGG:ath:AT1G77850 GeneFarm:3413 TAIR:At1g77850 eggNOG:NOG325741
OMA:IWRACAG PhylomeDB:Q84WU6 ProtClustDB:CLSN2689276
Genevestigator:Q84WU6 GermOnline:AT1G77850 Uniprot:Q84WU6
Length = 585
Score = 230 (86.0 bits), Expect = 1.6e-25, Sum P(3) = 1.6e-25
Identities = 38/68 (55%), Positives = 51/68 (75%)
Query: 1 MQPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQ 60
+ PP Q+L D+H +W FRHIYRG P+RHLLTTGWS FV+ K+L AGDSV+F+R
Sbjct: 152 IDPPVQKLYVTDIHGAVWDFRHIYRGTPRRHLLTTGWSKFVNSKKLIAGDSVVFMRKSAD 211
Query: 61 QLLLGIRR 68
++ +G+RR
Sbjct: 212 EMFIGVRR 219
Score = 142 (55.0 bits), Expect = 1.6e-25, Sum P(3) = 1.6e-25
Identities = 39/118 (33%), Positives = 58/118 (49%)
Query: 103 PFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISD 162
PF V + P A SEFVV A+ ++ S + G R +M ETE+S + I +
Sbjct: 283 PFEVVFYPAAGWSEFVVR-AEDVESSMSMYWTPGTRVKMAMETEDSSRITWFQGIVSSTY 341
Query: 163 LDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPVT-APFFICP-PPFFRSKHPR 218
+ W+ S W+ LQ+ WDE + RV+ W++E A P PP R K+P+
Sbjct: 342 QETGPWRGSPWKQLQITWDEPEILQNVKRVNPWQVEIAAHATQLHTPFPPAKRLKYPQ 399
Score = 40 (19.1 bits), Expect = 1.6e-25, Sum P(3) = 1.6e-25
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 735 MNPDPLLTK---GMMGLGKDFSNNISSGAMLANYENSKDA---QQELSSSIVS-QSFG 785
++P P L K MM G S+N+S + N + D + LS + S Q FG
Sbjct: 471 LSPLPDLGKVSTEMMNFGSPPSDNLSPNSNTTNLSSGNDLVGNRGPLSKKVNSIQLFG 528
>TAIR|locus:2126460 [details] [associations]
symbol:ARF16 "auxin response factor 16" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA;IDA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0035198 "miRNA binding" evidence=ISS] [GO:0007389 "pattern
specification process" evidence=IDA] [GO:0009733 "response to auxin
stimulus" evidence=IEP] [GO:0048829 "root cap development"
evidence=IGI;IMP] [GO:0051301 "cell division" evidence=IGI]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009733 GO:GO:0009734
GO:GO:0051301 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
EMBL:AL161576 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0048829 GO:GO:0035198 GO:GO:0007389
HOGENOM:HOG000241141 eggNOG:NOG315592 EMBL:AL078464 EMBL:AY059792
EMBL:AY091198 EMBL:EU550120 EMBL:EU550121 EMBL:EU550122
EMBL:EU550123 EMBL:EU550124 EMBL:EU550125 EMBL:EU550126
EMBL:EU550127 EMBL:EU550128 EMBL:EU550129 EMBL:EU550130
EMBL:EU550131 EMBL:EU550132 EMBL:EU550133 EMBL:EU550134
EMBL:EU550135 EMBL:EU550136 EMBL:EU550137 EMBL:EU550138
EMBL:EU550139 EMBL:EU550140 EMBL:EU550141 EMBL:EU550142
EMBL:EU550143 IPI:IPI00528149 PIR:T08984 RefSeq:NP_567841.1
UniGene:At.3365 ProteinModelPortal:Q93YR9 SMR:Q93YR9 IntAct:Q93YR9
STRING:Q93YR9 EnsemblPlants:AT4G30080.1 GeneID:829131
KEGG:ath:AT4G30080 GeneFarm:3406 TAIR:At4g30080 InParanoid:Q93YR9
OMA:GHAENAY PhylomeDB:Q93YR9 ProtClustDB:CLSN2917636
Genevestigator:Q93YR9 GermOnline:AT4G30080 Uniprot:Q93YR9
Length = 670
Score = 245 (91.3 bits), Expect = 9.1e-18, Sum P(2) = 9.1e-18
Identities = 42/70 (60%), Positives = 56/70 (80%)
Query: 2 QPPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQ 61
+PP Q ++A+D+H ++W FRHIYRG P+RHLLTTGWS FV+ K+L AGDS++F+R E
Sbjct: 154 EPPVQTILAKDVHGDVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFMRAENGD 213
Query: 62 LLLGIRRANR 71
L +GIRRA R
Sbjct: 214 LCVGIRRAKR 223
Score = 215 (80.7 bits), Expect = 6.7e-13, Sum P(2) = 6.7e-13
Identities = 65/193 (33%), Positives = 88/193 (45%)
Query: 34 TTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANXXXXXXXXXXMHIGILXX 93
+ GW+ + G G S L DE L RR+N A+ + L
Sbjct: 233 SAGWNP-IGGS---CGYSSLLREDESNSL----RRSNCSLADRKGKVTAESVIEAATLAI 284
Query: 94 XXXXXXNNSPFTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRR- 152
+ PF V Y PRAS SEF V A+ S GMRF+M FETE+S
Sbjct: 285 ------SGRPFEVVYYPRASTSEFCVKALDARAAMRIPWCS-GMRFKMAFETEDSSRISW 337
Query: 153 YMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPVT----APFFICP 208
+MGT++ ++ DP+RW NS WR LQV WDE + RV+ W +E V+ P
Sbjct: 338 FMGTVSAVNVSDPIRWPNSPWRLLQVAWDEPDLLQNVKRVNPWLVELVSNVHPIPLTSFS 397
Query: 209 PPFFRSKHPRQAD 221
PP + + P+ D
Sbjct: 398 PPRKKMRLPQHPD 410
Score = 52 (23.4 bits), Expect = 9.1e-18, Sum P(2) = 9.1e-18
Identities = 29/98 (29%), Positives = 42/98 (42%)
Query: 222 DDASDLDNVFKRTMPWIGDDFGVKDSQSLPGLSLV---QWMNMQQNPSLANAMQSSYMHS 278
D+ L NV KR PW+ + V + +P S + M + Q+P N + S + S
Sbjct: 366 DEPDLLQNV-KRVNPWLVEL--VSNVHPIPLTSFSPPRKKMRLPQHPDYNNLINSIPVPS 422
Query: 279 LPG----------SILQNLNGGLSQMPQQNNLQYTGQS 306
P S+L N+ GL Q + N QY G S
Sbjct: 423 FPSNPLIRSSPLSSVLDNVPVGL-QGARHNAHQYYGLS 459
Score = 37 (18.1 bits), Expect = 3.3e-16, Sum P(2) = 3.3e-16
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 316 QLAKLPSTVNPLGSNILPQQPLGDISQQSRQNMITQNLPSG 356
+L + P N + S +P P + + S + + N+P G
Sbjct: 404 RLPQHPDYNNLINSIPVPSFPSNPLIRSSPLSSVLDNVPVG 444
>TAIR|locus:2037169 [details] [associations]
symbol:ARF23 "auxin response factor 23" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0009734 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
HOGENOM:HOG000241141 EMBL:AC022314 IPI:IPI00526589 PIR:E96503
RefSeq:NP_175062.1 UniGene:At.52022 ProteinModelPortal:Q9LP07
SMR:Q9LP07 EnsemblPlants:AT1G43950.1 GeneID:840994
KEGG:ath:AT1G43950 GeneFarm:3427 TAIR:At1g43950 OMA:PTENENQ
PhylomeDB:Q9LP07 Genevestigator:Q9LP07 GermOnline:AT1G43950
Uniprot:Q9LP07
Length = 222
Score = 159 (61.0 bits), Expect = 8.9e-10, P = 8.9e-10
Identities = 34/67 (50%), Positives = 44/67 (65%)
Query: 2 QP-PAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQ 60
QP PAQEL+A DLH N W F+H YR P+ TTGW+ F + K+L GD ++F R E
Sbjct: 159 QPIPAQELIAIDLHGNQWRFKHSYR-VPRGD--TTGWNAFTTSKKLVVGDVIVFARGETG 215
Query: 61 QLLLGIR 67
+L +GIR
Sbjct: 216 ELRVGIR 222
>DICTYBASE|DDB_G0285837 [details] [associations]
symbol:DDB_G0285837 "BRWD group protein"
species:44689 "Dictyostelium discoideum" [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR017986 InterPro:IPR001487 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 Pfam:PF00439 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00297
SMART:SM00320 dictyBase:DDB_G0285837 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
EMBL:AAFI02000080 HSSP:Q03330 RefSeq:XP_638029.1
ProteinModelPortal:Q54MP8 EnsemblProtists:DDB0220685 GeneID:8625294
KEGG:ddi:DDB_G0285837 InParanoid:Q54MP8 OMA:DEITDIY Uniprot:Q54MP8
Length = 2200
Score = 134 (52.2 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 35/95 (36%), Positives = 56/95 (58%)
Query: 104 FTVFYNPRASPSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDL 163
+TV Y+ P +++V +K K++ ++ RFRM + SG Y GTI ISD
Sbjct: 1350 YTVIYHVSDIP-DYLVLASKVRKSMLTDWTVPNKRFRMFYPA--SGW--YNGTIIEISDS 1404
Query: 164 DPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIE 198
DP+ + NS W N++V WD++ E+ +RV+ WEI+
Sbjct: 1405 DPL-FPNSPWENIKVLWDDT---EEEDRVNYWEID 1435
Score = 61 (26.5 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 23/75 (30%), Positives = 30/75 (40%)
Query: 260 NMQQNPSLANAMQSS-YMHSLP-GSILQNLNGGLSQMPQQNNLQYTGQSLPQQVPQIDQL 317
N N S + S+ YM + P S +QN Q PQ NN+ Y Q P +
Sbjct: 1586 NNTSNYSYLDPNNSNMYMQTYPQNSTMQN-----QQQPQLNNIYYNSQLQPTNYNYTNNF 1640
Query: 318 AKLPSTVNPLGSNIL 332
S N SNI+
Sbjct: 1641 NTNYSNFNNSSSNIM 1655
Score = 39 (18.8 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 26/118 (22%), Positives = 42/118 (35%)
Query: 595 TINSRTHRSAGIGEEVAQSASALLNPSALETMPSNANLVKDLPHKSDVKPSVNISKTQNQ 654
+I+ H ++ G+ + +S LL+PS E N N + + + T
Sbjct: 1899 SISDSEHDNSKTGKNITRS---LLSPSEDEG-GINVNRTPSKRGRKKANATTTTTTTTTT 1954
Query: 655 GFFTPQTYL-NGAATQTDYLDXXXXXXXVCLSQNDVHLQQNNSLSYNPQSTLRDASQD 711
TP L G T++ S +D + NNS N L D+ D
Sbjct: 1955 TSSTPSKRLITGRLTRSRSNQSNEE------SDDDGFIDDNNSSHQNGGKILDDSDND 2006
>TAIR|locus:2085969 [details] [associations]
symbol:EDF3 "ethylene response DNA binding factor 3"
species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0009691 "cytokinin biosynthetic
process" evidence=RCA] InterPro:IPR001471 InterPro:IPR003340
InterPro:IPR016177 Pfam:PF00847 Pfam:PF02362 PROSITE:PS50863
PROSITE:PS51032 SMART:SM00380 SMART:SM01019 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009873 EMBL:AB028607
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 Gene3D:3.30.730.10
SUPFAM:SSF54171 HSSP:Q9ZWM9 eggNOG:NOG266118 HOGENOM:HOG000237484
KO:K09287 ProtClustDB:CLSN2682511 EMBL:AJ441073 EMBL:AK229415
EMBL:AY087951 IPI:IPI00523797 RefSeq:NP_189201.1 UniGene:At.37331
ProteinModelPortal:Q9LS06 SMR:Q9LS06 EnsemblPlants:AT3G25730.1
GeneID:822164 KEGG:ath:AT3G25730 TAIR:At3g25730 InParanoid:Q9LS06
OMA:NAHSKSE Genevestigator:Q9LS06 Uniprot:Q9LS06
Length = 333
Score = 117 (46.2 bits), Expect = 0.00081, P = 0.00081
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 12 DLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIR--DEKQQLLLG 65
D++ +W FR+ Y + ++LT GWS FV KRL AGD + F R D+ Q+ +G
Sbjct: 229 DVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKRLCAGDLISFKRSNDQDQKFFIG 284
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.130 0.384 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 825 688 0.00080 121 3 11 23 0.44 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 23
No. of states in DFA: 619 (66 KB)
Total size of DFA: 348 KB (2172 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 56.20u 0.34s 56.54t Elapsed: 00:00:03
Total cpu time: 56.20u 0.34s 56.54t Elapsed: 00:00:03
Start: Tue May 21 00:58:19 2013 End: Tue May 21 00:58:22 2013