Query 003369
Match_columns 825
No_of_seqs 226 out of 467
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 22:56:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003369.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003369hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 99.7 3.2E-18 1.1E-22 158.6 7.5 71 3-73 49-121 (130)
2 4i1k_A B3 domain-containing tr 99.0 3E-10 1E-14 107.7 6.3 64 5-71 79-144 (146)
3 1yel_A AT1G16640; CESG, protei 98.7 1.1E-08 3.7E-13 90.9 5.7 61 6-68 40-100 (104)
4 3cgm_A SLYD, peptidyl-prolyl C 68.6 11 0.00038 36.0 7.1 100 46-162 3-110 (158)
5 2k8i_A SLYD, peptidyl-prolyl C 67.1 17 0.00057 35.2 8.1 102 46-162 3-114 (171)
6 2kfw_A FKBP-type peptidyl-prol 63.7 8.9 0.0003 38.1 5.6 102 46-162 3-114 (196)
7 2kr7_A FKBP-type peptidyl-prol 62.5 21 0.00073 33.5 7.7 105 43-162 4-119 (151)
8 2jng_A Cullin-7, CUL-7; P53 bi 61.6 6.9 0.00023 36.3 4.0 69 120-202 10-78 (105)
9 4dt4_A FKBP-type 16 kDa peptid 51.3 33 0.0011 33.3 7.1 106 45-162 24-138 (169)
10 3qii_A PHD finger protein 20; 40.6 29 0.00099 31.0 4.4 54 131-202 20-73 (85)
11 3p8d_A Medulloblastoma antigen 40.2 33 0.0011 29.3 4.5 54 131-202 5-58 (67)
12 3pr9_A FKBP-type peptidyl-prol 39.2 1.4E+02 0.0047 28.5 9.2 62 90-162 56-123 (157)
13 3pie_A 5'->3' exoribonuclease 37.3 30 0.001 42.8 5.2 74 117-200 1050-1127(1155)
14 2e63_A KIAA1787 protein; struc 36.4 22 0.00074 34.7 3.2 23 44-66 116-138 (170)
15 1mhn_A SurviVal motor neuron p 33.3 36 0.0012 27.3 3.6 29 131-162 2-30 (59)
16 1ix5_A FKBP; ppiase, isomerase 32.5 85 0.0029 29.4 6.5 62 90-162 57-124 (151)
17 2yue_A Protein neuralized; str 32.3 40 0.0014 32.8 4.3 30 37-66 97-126 (168)
18 4a4f_A SurviVal of motor neuro 30.4 43 0.0015 27.4 3.6 55 131-200 7-61 (64)
19 1lpl_A Hypothetical 25.4 kDa p 29.1 22 0.00076 31.9 1.8 55 124-189 4-58 (95)
20 3s6w_A Tudor domain-containing 29.0 42 0.0014 26.4 3.2 28 132-162 1-28 (54)
21 2equ_A PHD finger protein 20-l 28.0 46 0.0016 28.6 3.5 39 131-183 8-46 (74)
22 2cbp_A Cucumber basic protein; 27.7 25 0.00085 31.1 1.9 18 41-58 19-36 (96)
23 1whg_A Tubulin specific chaper 24.6 38 0.0013 31.4 2.5 49 131-189 31-79 (113)
24 3eqe_A Putative cystein deoxyg 24.6 36 0.0012 33.0 2.5 50 4-54 78-129 (171)
25 1g5v_A SurviVal motor neuron p 24.1 59 0.002 28.7 3.6 55 131-200 9-63 (88)
26 2vb2_X Copper protein, cation 23.7 49 0.0017 29.0 2.9 25 44-68 60-86 (88)
27 1whl_A Cylindromatosis tumor s 23.4 1.8E+02 0.0063 25.8 6.6 55 131-190 6-62 (95)
28 2qcp_X Cation efflux system pr 22.9 52 0.0018 28.3 2.9 25 44-68 52-78 (80)
29 3h8z_A FragIle X mental retard 22.3 75 0.0026 30.0 4.1 58 102-161 28-90 (128)
30 3eli_A AHSA1, AHA1 domain prot 22.1 77 0.0026 28.4 4.1 42 131-182 45-86 (152)
31 3kw2_A Probable R-RNA methyltr 21.4 1.6E+02 0.0053 30.2 6.6 52 106-162 7-58 (257)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.73 E-value=3.2e-18 Score=158.65 Aligned_cols=71 Identities=35% Similarity=0.560 Sum_probs=65.8
Q ss_pred CCccEEEEeecCCCeeEeeEEEcCCCcccccccccceeecCCCcCCCCeEEEEEcCC--CcEEEEEEeccCCC
Q 003369 3 PPAQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEK--QQLLLGIRRANRQP 73 (825)
Q Consensus 3 pP~QeLvarDlhGk~W~FRhiYRG~PkRhlLTtGWS~FVk~KrL~AGDsVVF~R~e~--geL~vGIRRA~R~~ 73 (825)
++.++|.++|.+|++|+|||+||+++++|+||+||+.||++|+|++||.|+|+|.++ ++|+|+|||+.+..
T Consensus 49 ~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 49 VKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp SCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred CCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHHHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence 466899999999999999999999999999999999999999999999999999874 67999999988753
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.00 E-value=3e-10 Score=107.71 Aligned_cols=64 Identities=22% Similarity=0.365 Sum_probs=56.7
Q ss_pred ccEEEEeecCCCeeEeeEEEcCCCcccccccccceeecCCCcCCCCeEEEEEcCCC--cEEEEEEeccC
Q 003369 5 AQELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQ--QLLLGIRRANR 71 (825)
Q Consensus 5 ~QeLvarDlhGk~W~FRhiYRG~PkRhlLTtGWS~FVk~KrL~AGDsVVF~R~e~g--eL~vGIRRA~R 71 (825)
..++.++|. |+.|+|+|+|++. +++|++||+.||++++|++||.++|...++. .+.|.|-|+..
T Consensus 79 ~~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~dn~L~~GD~cvFeli~~~~~~f~V~IfR~~e 144 (146)
T 4i1k_A 79 SGFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTLENNLGEGDVCVFELLRTRDFVLKVTAFRVNE 144 (146)
T ss_dssp CSEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHHHTTCCTTCEEEEEECSSSSCEEEEEEECCC-
T ss_pred CeEEEEEEC-CcEEEEEEEEeCC--cEEECCchHHHHHHcCCCCCCEEEEEEecCCceEEEEEEEeccC
Confidence 368999997 6999999999985 7999999999999999999999999998765 58888888764
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=98.72 E-value=1.1e-08 Score=90.89 Aligned_cols=61 Identities=30% Similarity=0.470 Sum_probs=54.9
Q ss_pred cEEEEeecCCCeeEeeEEEcCCCcccccccccceeecCCCcCCCCeEEEEEcCCCcEEEEEEe
Q 003369 6 QELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRR 68 (825)
Q Consensus 6 QeLvarDlhGk~W~FRhiYRG~PkRhlLTtGWS~FVk~KrL~AGDsVVF~R~e~geL~vGIRR 68 (825)
-++.++|..|++|++++.+++ .+.+|++||..||++++|++||.++|...++..+.|-|=|
T Consensus 40 ~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~~~L~~GD~lvF~~~~~~~f~V~If~ 100 (104)
T 1yel_A 40 ITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKDNNLEDGKYLQFIYDRDRTFYVIIYG 100 (104)
T ss_dssp SEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHHHTCCTTCEEEEEECSSSEEEEEEEC
T ss_pred CEEEEECCCCCEEEEEEEEEC--CcEEEccChHHHHHHcCCCCCCEEEEEEcCCCeEEEEEEC
Confidence 478999999999999999875 4789999999999999999999999999998888887744
No 4
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=68.61 E-value=11 Score=35.97 Aligned_cols=100 Identities=14% Similarity=0.118 Sum_probs=59.7
Q ss_pred cCCCCeEEEE-Ec-CCCcEEEEEEeccCCCCCCCCcccCCCCcCcchhHHHHHHHhcCCceEEEEcCCC------CCCcc
Q 003369 46 LFAGDSVLFI-RD-EKQQLLLGIRRANRQPANLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRA------SPSEF 117 (825)
Q Consensus 46 L~AGDsVVF~-R~-e~geL~vGIRRA~R~~~~~~ssvlSsdsM~~GvLAaAahaAatgspFtV~Y~PRa------s~sEF 117 (825)
...||.|.+- +. .+|+.+-.-+ ..+ .+-...+ +--+.+|......|..++|..-|.. ...-+
T Consensus 3 i~~gd~V~v~Y~g~~dG~~fdss~--~~f-------~~G~g~v-ipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~~~lv~ 72 (158)
T 3cgm_A 3 VGQDKVVTIRYTLQVEGEVLDQGE--LSY-------LHGHRNL-IPGLEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQ 72 (158)
T ss_dssp CCTTEEEEEEEEEEETTEEEEEEE--EEE-------ETTSSSS-CHHHHHHHTTCBTTCEEEEEECGGGTTCCCCGGGEE
T ss_pred CCCCCEEEEEEEEEECCEEEEeeE--EEE-------EECCCCc-ChHHHHHHcCCCCCCEEEEEECcHHHcCCCCcceEE
Confidence 4578887652 21 5777665443 100 0111112 2234555555567777777765543 23457
Q ss_pred ccchHHHHHhhhhcCccccceeeeeeeccCCCcceeeEEEEEeec
Q 003369 118 VVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISD 162 (825)
Q Consensus 118 VVp~~kY~kAm~~~~ws~GMRFRM~FEtEDss~rry~GTItgVsd 162 (825)
.||++.|.+. ..|.+||+|.+ ++++. +.+.|+|+.|.+
T Consensus 73 ~v~~~~f~~~---~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 110 (158)
T 3cgm_A 73 VVPLSAFPED---AEVVPGAQFYA--QDMEG--NPMPLTVVAVEG 110 (158)
T ss_dssp EEEGGGSCTT---SCCCTTCEEEE--EETTT--EEEEEEEEEEET
T ss_pred EEEHHHCCCC---CCCccCCEEEE--ECCCC--CEEEEEEEEECC
Confidence 8888888532 47999999985 55542 667899999976
No 5
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=67.13 E-value=17 Score=35.21 Aligned_cols=102 Identities=22% Similarity=0.217 Sum_probs=60.5
Q ss_pred cCCCCeEEE-E--EcCCCcEEEEEEeccCCCCCCCCccc-CCCCcCcchhHHHHHHHhcCCceEEEEcCCC------CCC
Q 003369 46 LFAGDSVLF-I--RDEKQQLLLGIRRANRQPANLSSSVL-SSDSMHIGILAAAAHAAANNSPFTVFYNPRA------SPS 115 (825)
Q Consensus 46 L~AGDsVVF-~--R~e~geL~vGIRRA~R~~~~~~ssvl-SsdsM~~GvLAaAahaAatgspFtV~Y~PRa------s~s 115 (825)
...||.|.+ | +..+|+.+-.-+.. .|..+. -...+ +--+.+|......|..++|..-|-. .-.
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~------~P~~f~lG~g~v-ipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~~~ 75 (171)
T 2k8i_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVS------APLDYLHGHGSL-ISGLETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (171)
T ss_dssp CCTTEEEEEEEEEEETTSCEEEECCSS------SCEEEETTSCSS-CSHHHHHHTTCCTTCEEEEEEETTTSSCCCCTTS
T ss_pred CCCCCEEEEEEEEEECCCCEEeeccCC------cCEEEEECCCCc-chHHHHHHcCCCCCCEEEEEECcHHhcCCCChhh
Confidence 557888765 2 33577776654321 111111 11122 2235556555667777777665543 234
Q ss_pred ccccchHHHHHhhhhcCccccceeeeeeeccCCCcceeeEEEEEeec
Q 003369 116 EFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISD 162 (825)
Q Consensus 116 EFVVp~~kY~kAm~~~~ws~GMRFRM~FEtEDss~rry~GTItgVsd 162 (825)
-+.||++.|... ..+.+||+|.+ ++++. . +.|+|+.|.+
T Consensus 76 v~~v~~~~f~~~---~~~~~G~~~~~--~~~~G--~-~~~~V~~v~~ 114 (171)
T 2k8i_A 76 VQRVPKDVFMGV---DELQVGMRFLA--ETDQG--P-VPVEITAVED 114 (171)
T ss_dssp EEEEEGGGGTTS---SCCCTTCEEEE--EETTE--E-EEEEEEEECS
T ss_pred EEEeeHHHCCcc---cCccCCcEEEE--ECCCC--c-EEEEEEEEcC
Confidence 468899888532 47999999985 55543 3 6899999975
No 6
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=63.71 E-value=8.9 Score=38.06 Aligned_cols=102 Identities=22% Similarity=0.217 Sum_probs=59.7
Q ss_pred cCCCCeEEE-E--EcCCCcEEEEEEeccCCCCCCCCccc-CCCCcCcchhHHHHHHHhcCCceEEEEcCCC------CCC
Q 003369 46 LFAGDSVLF-I--RDEKQQLLLGIRRANRQPANLSSSVL-SSDSMHIGILAAAAHAAANNSPFTVFYNPRA------SPS 115 (825)
Q Consensus 46 L~AGDsVVF-~--R~e~geL~vGIRRA~R~~~~~~ssvl-SsdsM~~GvLAaAahaAatgspFtV~Y~PRa------s~s 115 (825)
...||.|.+ | +.++|++|-.-+.. .|..++ -...+ +--+.+|......|..++|+.-|-. ...
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~------~P~~f~lG~g~v-ipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~~l 75 (196)
T 2kfw_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVS------APLDYLHGHGSL-ISGLETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (196)
T ss_dssp CCSSCEEEEEEEEEETTTEEEEECCTT------SCCEEESSSSSS-CHHHHHHHSSSCTTCEEEEECSTTTTSSCCCTTT
T ss_pred CCCCCEEEEEEEEEECCCCEEEecCCC------CCEEEEECCCCc-chHHHHHHcCCCCCCEEEEEeCcHHhcCCCChhh
Confidence 567888866 2 34577776554321 111111 11111 2234445544566777877765543 334
Q ss_pred ccccchHHHHHhhhhcCccccceeeeeeeccCCCcceeeEEEEEeec
Q 003369 116 EFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISD 162 (825)
Q Consensus 116 EFVVp~~kY~kAm~~~~ws~GMRFRM~FEtEDss~rry~GTItgVsd 162 (825)
-+.||++.|... ..+.+||+|.+ ++++. .+.|+|+.|.+
T Consensus 76 V~~vp~~~f~~~---~~~~~G~~~~~--~~~~G---~~~~~V~~v~~ 114 (196)
T 2kfw_A 76 VQRVPKDVFMGV---DELQVGMRFLA--ETDQG---PVPVEITAVED 114 (196)
T ss_dssp CEEECGGGCCCS---SCCCTTCEEEE--EETTE---EEEEEBCCCCS
T ss_pred EEEEEHHHCCCc---cCcccCCEEEE--ECCCC---cEEEEEEEEcC
Confidence 578888887421 36899999964 55543 67899999975
No 7
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=62.51 E-value=21 Score=33.55 Aligned_cols=105 Identities=17% Similarity=0.125 Sum_probs=62.0
Q ss_pred CCCcCCCCeEEEE---EcC-CCcEEEEEEeccCCCCCCCCccc-CCCCcCcchhHHHHHHHhcCCceEEEEcCC------
Q 003369 43 GKRLFAGDSVLFI---RDE-KQQLLLGIRRANRQPANLSSSVL-SSDSMHIGILAAAAHAAANNSPFTVFYNPR------ 111 (825)
Q Consensus 43 ~KrL~AGDsVVF~---R~e-~geL~vGIRRA~R~~~~~~ssvl-SsdsM~~GvLAaAahaAatgspFtV~Y~PR------ 111 (825)
.+....||.|.+. +.. +|+.+-.-+.. .|.... -...+ +--+.+|......|..++|..-|.
T Consensus 4 ~~~i~~gd~V~v~Y~g~~~~dG~~fdss~~~------~p~~f~~G~g~v-ipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~ 76 (151)
T 2kr7_A 4 HDLESIKQAALIEYEVREQGSSIVLDSNISK------EPLEFIIGTNQI-IAGLEKAVLKAQIGEWEEVVIAPEEAYGVY 76 (151)
T ss_dssp CCCTTSCCEEEEEEEEEESSCSCEEEESTTT------CCEEEETTCCCS-CHHHHHHHTTCCBTCEEEEEECGGGTTCSS
T ss_pred ccCCCCCCEEEEEEEEEECCCCCEEEeCCCC------cCEEEEECCCCc-cHHHHHHHcCCCCCCEEEEEEecHHHcCCC
Confidence 4567789998763 334 77776654321 111111 11111 223444555556677777765443
Q ss_pred CCCCccccchHHHHHhhhhcCccccceeeeeeeccCCCcceeeEEEEEeec
Q 003369 112 ASPSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISD 162 (825)
Q Consensus 112 as~sEFVVp~~kY~kAm~~~~ws~GMRFRM~FEtEDss~rry~GTItgVsd 162 (825)
....-+.||++.| . . ..+.+||+|.+ ++++. ..+.|+|+.|.+
T Consensus 77 ~~~~v~~v~~~~f-~--~-~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 119 (151)
T 2kr7_A 77 ESSYLQEVPRDQF-E--G-IELEKGMSVFG--QTEDN--QTIQAIIKDFSA 119 (151)
T ss_dssp CSCEEEEEEGGGG-T--T-SCCCTTCEEEE--EETTT--EEEEEEEEEECS
T ss_pred CcceEEEEcHHHc-C--C-CCCccCCEEEE--ECCCC--CEEEEEEEEECC
Confidence 2335578888888 2 2 57999999985 55443 567899999975
No 8
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=61.64 E-value=6.9 Score=36.26 Aligned_cols=69 Identities=23% Similarity=0.262 Sum_probs=46.4
Q ss_pred chHHHHHhhhhcCccccceeeeeeeccCCCcceeeEEEEEeecCCCCCCCCCCccceeeeccccCCCCCCCccccccccc
Q 003369 120 PLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEP 199 (825)
Q Consensus 120 p~~kY~kAm~~~~ws~GMRFRM~FEtEDss~rry~GTItgVsd~DPvrWP~S~WR~LkV~WDE~~~~~~~eRVSPWEIEP 199 (825)
..+.|..-++ .++.+|||+||.=.-||-+. .=.|++. ++. +- -+ .++|.|..... .-.|+-=.||.
T Consensus 10 s~~~Ya~YVr-~~l~pGM~VR~~~dyeev~~-GD~G~vl-~s~-~G-----l~--~vQv~W~~~G~---TyWV~~~~~El 75 (105)
T 2jng_A 10 SGNTYALYVR-DTLQPGMRVRMLDDYEEISA-GDEGEFR-QSN-NG-----VP--PVQVFWESTGR---TYWVHWHMLEI 75 (105)
T ss_dssp SSHHHHHHHH-HHCCTTCEEEECSCBTTBCT-TCEEEEE-EEC-TT-----SS--EEEEEETTTTE---EEEEEGGGEEE
T ss_pred cchhHHHHHH-hcCCCccEEeeehhhhhhcc-CCceeEE-ecC-CC-----Cc--cceeeehhcCc---eEEEEeehhhh
Confidence 4567777777 89999999999744444332 2368887 432 32 22 89999997652 34677777887
Q ss_pred cCC
Q 003369 200 VTA 202 (825)
Q Consensus 200 v~~ 202 (825)
+..
T Consensus 76 lg~ 78 (105)
T 2jng_A 76 LGF 78 (105)
T ss_dssp CCC
T ss_pred cCC
Confidence 754
No 9
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=51.32 E-value=33 Score=33.33 Aligned_cols=106 Identities=12% Similarity=0.075 Sum_probs=63.3
Q ss_pred CcCCCCeEEEE---EcCCCcEEEEEEeccCCCCCCCCcccCCCCcCcchhHHHHHHHhcCCceEEEEcCCCCC------C
Q 003369 45 RLFAGDSVLFI---RDEKQQLLLGIRRANRQPANLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASP------S 115 (825)
Q Consensus 45 rL~AGDsVVF~---R~e~geL~vGIRRA~R~~~~~~ssvlSsdsM~~GvLAaAahaAatgspFtV~Y~PRas~------s 115 (825)
....||.|.+- +.++|++|-.-+-... |..++-....-+--+.+|......|..++|+.-|...- .
T Consensus 24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~~~-----P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~~~l 98 (169)
T 4dt4_A 24 SVQSNSAVLVHFTLKLDDGTTAESTRNNGK-----PALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSPDL 98 (169)
T ss_dssp SCCTTCEEEEEEEEEETTSCEEEEHHHHTS-----CEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCCCCGGG
T ss_pred cCCCCCEEEEEEEEEECCCCEEEecCCCCC-----CEEEEECCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCChHH
Confidence 57789999773 3457887665432111 11111111111223455555567777888876665432 2
Q ss_pred ccccchHHHHHhhhhcCccccceeeeeeeccCCCcceeeEEEEEeec
Q 003369 116 EFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISD 162 (825)
Q Consensus 116 EFVVp~~kY~kAm~~~~ws~GMRFRM~FEtEDss~rry~GTItgVsd 162 (825)
=+.||++.+... ..+.+||+|.+ ++++. ..+.|+|+.|.+
T Consensus 99 v~~vp~~~f~~~---~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 138 (169)
T 4dt4_A 99 IQYFSRREFMDA---GEPEIGAIMLF--TAMDG--SEMPGVIREING 138 (169)
T ss_dssp EEEEEGGGGTTT---CCCCTTCEEEE--ECTTS--CEEEEEEEEEET
T ss_pred EEEeCHHHCCCc---CCCCCCcEEEE--ECCCC--CEEEEEEEEEcC
Confidence 367888887532 46899999876 55442 467899999986
No 10
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=40.61 E-value=29 Score=31.03 Aligned_cols=54 Identities=9% Similarity=0.212 Sum_probs=40.5
Q ss_pred cCccccceeeeeeeccCCCcceeeEEEEEeecCCCCCCCCCCccceeeeccccCCCCCCCccccccccccCC
Q 003369 131 NQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPVTA 202 (825)
Q Consensus 131 ~~ws~GMRFRM~FEtEDss~rry~GTItgVsd~DPvrWP~S~WR~LkV~WDE~~~~~~~eRVSPWEIEPv~~ 202 (825)
..|.+|+++--.| ++ .++|-++|++|... ....|.++++. .+.|..=+|.|+..
T Consensus 20 ~~f~vGd~VlArW-~D---~~yYPAkI~sV~~~----------~~YtV~F~DG~----~etvk~~~IKp~~~ 73 (85)
T 3qii_A 20 SEFQINEQVLACW-SD---CRFYPAKVTAVNKD----------GTYTVKFYDGV----VQTVKHIHVKAFSK 73 (85)
T ss_dssp -CCCTTCEEEEEC-TT---SCEEEEEEEEECTT----------SEEEEEETTSC----EEEEEGGGEEECC-
T ss_pred cccccCCEEEEEe-CC---CCEeeEEEEEECCC----------CeEEEEEeCCC----eEEecHHHcccCCh
Confidence 5899999999999 32 68999999999752 35899999943 35666667776653
No 11
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=40.18 E-value=33 Score=29.33 Aligned_cols=54 Identities=9% Similarity=0.212 Sum_probs=40.3
Q ss_pred cCccccceeeeeeeccCCCcceeeEEEEEeecCCCCCCCCCCccceeeeccccCCCCCCCccccccccccCC
Q 003369 131 NQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPVTA 202 (825)
Q Consensus 131 ~~ws~GMRFRM~FEtEDss~rry~GTItgVsd~DPvrWP~S~WR~LkV~WDE~~~~~~~eRVSPWEIEPv~~ 202 (825)
..|.+|+++--.| ++ .++|-++|++|... ....|.+++.. .+.|..=+|.|+..
T Consensus 5 ~~~~vGd~vmArW-~D---~~yYpA~I~si~~~----------~~Y~V~F~dG~----~etvk~~~ikp~~~ 58 (67)
T 3p8d_A 5 SEFQINEQVLACW-SD---CRFYPAKVTAVNKD----------GTYTVKFYDGV----VQTVKHIHVKAFSK 58 (67)
T ss_dssp CCCCTTCEEEEEC-TT---SCEEEEEEEEECTT----------SEEEEEETTSC----EEEEEGGGEEECC-
T ss_pred cccccCCEEEEEc-CC---CCEeeEEEEEECCC----------CeEEEEEeCCc----eEEEeHHHcccCCc
Confidence 5899999999999 32 58999999999752 34789999943 35666666666543
No 12
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=39.17 E-value=1.4e+02 Score=28.51 Aligned_cols=62 Identities=18% Similarity=0.213 Sum_probs=43.4
Q ss_pred hhHHHHHHHhcCCceEEEEcCCCC------CCccccchHHHHHhhhhcCccccceeeeeeeccCCCcceeeEEEEEeec
Q 003369 90 ILAAAAHAAANNSPFTVFYNPRAS------PSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISD 162 (825)
Q Consensus 90 vLAaAahaAatgspFtV~Y~PRas------~sEFVVp~~kY~kAm~~~~ws~GMRFRM~FEtEDss~rry~GTItgVsd 162 (825)
-+.+|......|..++|+--|-.. ..=+.||++.+.+. . ....+||+|.+ +++ .|+|+.|.+
T Consensus 56 G~eeaL~gm~~Ge~~~v~Ipp~~aYG~~~~~~V~~v~~~~f~~~-~-~~~~~G~~~~~--~~~-------~~~V~~v~~ 123 (157)
T 3pr9_A 56 GLDEAILEMDVGEEREVVLPPEKAFGKRDPSKIKLIPLSEFTKR-G-IKPIKGLTITI--DGI-------PGKIVSINS 123 (157)
T ss_dssp HHHHHHHHCCTTCEEEEEECGGGTTCCCCGGGEEEEEHHHHHHT-T-CCCCTTCEEEE--TTE-------EEEEEEEET
T ss_pred HHHHHHcCCCCCCEEEEEECcHHhcCCCChHhEEEcCHHHCCcc-c-CCcCCCcEEEe--cCC-------CeEEEEEcC
Confidence 466777777888888887554432 23367899988653 2 46788999975 432 589999976
No 13
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=37.29 E-value=30 Score=42.78 Aligned_cols=74 Identities=19% Similarity=0.264 Sum_probs=43.9
Q ss_pred cccchHHHHHhhhhcCccccceeeeeeeccCCC-c-ceeeEEEEEeecCCCCCCCCCCccceeeeccccCCCCC--CCcc
Q 003369 117 FVVPLAKYYKAVHSNQISLGMRFRMMFETEESG-T-RRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEK--RNRV 192 (825)
Q Consensus 117 FVVp~~kY~kAm~~~~ws~GMRFRM~FEtEDss-~-rry~GTItgVsd~DPvrWP~S~WR~LkV~WDE~~~~~~--~eRV 192 (825)
.++..+.-..-+..-.|.+|+||.|.=+ ++ + --..|||+||.... .=.+|+|=||++=.+.. -.|-
T Consensus 1050 allkP~~a~~~L~~Q~F~LGDRVv~Vqd---sG~VPl~~kGTVVGi~~~~-------~~~~ldVvFD~~F~~G~tlggrc 1119 (1155)
T 3pie_A 1050 AILNAESSYVLLRSQRFHLGDRVMYIQD---SGKVPLHSKGTVVGYTSIG-------KNVSIQVLFDNEIIAGNNFGGRL 1119 (1155)
T ss_pred HeeCHHHhhccccCCcccCCCeEEEecC---CCCCccccceEEEEEecCC-------CceEEEEEeccCccCCCcccccc
Confidence 3443333333344357999999998644 43 2 22489999997632 24679999999854322 2344
Q ss_pred cccccccc
Q 003369 193 SIWEIEPV 200 (825)
Q Consensus 193 SPWEIEPv 200 (825)
|+----.|
T Consensus 1120 s~~RG~~v 1127 (1155)
T 3pie_A 1120 QTRRGLGL 1127 (1155)
T ss_pred cccccccc
Confidence 44443333
No 14
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.44 E-value=22 Score=34.69 Aligned_cols=23 Identities=30% Similarity=0.238 Sum_probs=21.2
Q ss_pred CCcCCCCeEEEEEcCCCcEEEEE
Q 003369 44 KRLFAGDSVLFIRDEKQQLLLGI 66 (825)
Q Consensus 44 KrL~AGDsVVF~R~e~geL~vGI 66 (825)
.+|.+||.|-|+++++|+|++.|
T Consensus 116 ~~l~~Gd~ig~~~~~~G~l~~~i 138 (170)
T 2e63_A 116 DQLGEGDRVGVERTVAGELRLWV 138 (170)
T ss_dssp GGCCSSCCEEEEECTTSCEEEEE
T ss_pred cccCCCCEEEEEEcCCcEEEEEE
Confidence 46789999999999999999998
No 15
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=33.25 E-value=36 Score=27.30 Aligned_cols=29 Identities=21% Similarity=0.285 Sum_probs=23.8
Q ss_pred cCccccceeeeeeeccCCCcceeeEEEEEeec
Q 003369 131 NQISLGMRFRMMFETEESGTRRYMGTITGISD 162 (825)
Q Consensus 131 ~~ws~GMRFRM~FEtEDss~rry~GTItgVsd 162 (825)
+.|.+|+.+...|..+ ..||.++|++|..
T Consensus 2 ~~~~~G~~c~A~~s~D---g~wYrA~I~~i~~ 30 (59)
T 1mhn_A 2 QQWKVGDKCSAIWSED---GCIYPATIASIDF 30 (59)
T ss_dssp CCCCTTCEEEEECTTT---SCEEEEEEEEEET
T ss_pred CcCCcCCEEEEEECCC---CCEEEEEEEEEcC
Confidence 4799999999998522 4899999999964
No 16
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Probab=32.51 E-value=85 Score=29.44 Aligned_cols=62 Identities=21% Similarity=0.104 Sum_probs=42.6
Q ss_pred hhHHHHHHHhcCCceEEEEcC------CCCCCccccchHHHHHhhhhcCccccceeeeeeeccCCCcceeeEEEEEeec
Q 003369 90 ILAAAAHAAANNSPFTVFYNP------RASPSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISD 162 (825)
Q Consensus 90 vLAaAahaAatgspFtV~Y~P------Ras~sEFVVp~~kY~kAm~~~~ws~GMRFRM~FEtEDss~rry~GTItgVsd 162 (825)
-+.+|......|..++|.--| +....-|.||+..+... . ..+.+||+|.+ ++ ..|+|+.|.+
T Consensus 57 G~eeaL~gm~~Ge~~~v~ipp~~aYG~~~~~~v~~v~~~~f~~~-~-~~~~~G~~~~~--~~-------~~~~V~~v~~ 124 (151)
T 1ix5_A 57 GFEEAVLDMEVGDEKTVKIPAEKAYGNRNEMLIQKIPRDAFKEA-D-FEPEEGMVILA--EG-------IPATITEVTD 124 (151)
T ss_dssp HHHHHHHTCCTTCCCEEEECTTTSSCSCCSTTBCCEETHHHHTS-T-TCCCTTEEEES--SS-------CEEEEEEEET
T ss_pred HHHHHHcCCCCCCEEEEEECcHHHCCCCCccEEEEEEHHHcCcc-C-CcccccCEEEE--CC-------eEEEEEEEcC
Confidence 355566666677777776544 33446789999999541 1 46899998764 32 6899999976
No 17
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=32.31 E-value=40 Score=32.77 Aligned_cols=30 Identities=10% Similarity=0.295 Sum_probs=24.6
Q ss_pred cceeecCCCcCCCCeEEEEEcCCCcEEEEE
Q 003369 37 WSLFVSGKRLFAGDSVLFIRDEKQQLLLGI 66 (825)
Q Consensus 37 WS~FVk~KrL~AGDsVVF~R~e~geL~vGI 66 (825)
|..-+.++-...||.+.|+++++|+|++.|
T Consensus 97 W~~~l~~~~~~~g~~l~f~v~~~G~l~~~i 126 (168)
T 2yue_A 97 WAKALHEQYCEKDNILYYYVNGAGDVIYGI 126 (168)
T ss_dssp CCEECCSTTCCSSCEEEEEECTTSEEEEEE
T ss_pred EEEEeccccccCCCEEEEEEcCCCEEEEEE
Confidence 655555554588999999999999999998
No 18
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=30.42 E-value=43 Score=27.45 Aligned_cols=55 Identities=11% Similarity=0.261 Sum_probs=36.7
Q ss_pred cCccccceeeeeeeccCCCcceeeEEEEEeecCCCCCCCCCCccceeeeccccCCCCCCCcccccccccc
Q 003369 131 NQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPV 200 (825)
Q Consensus 131 ~~ws~GMRFRM~FEtEDss~rry~GTItgVsd~DPvrWP~S~WR~LkV~WDE~~~~~~~eRVSPWEIEPv 200 (825)
..|.+|+.+.-.|..+ ..||.++|.+|.... ....|.+.+-.. .+.|..=+|.|+
T Consensus 7 ~~~~vGd~c~A~~s~D---g~wYrA~I~~v~~~~---------~~~~V~fvdYGn---~e~V~~~~Lrpl 61 (64)
T 4a4f_A 7 HSWKVGDKCMAVWSED---GQCYEAEIEEIDEEN---------GTAAITFAGYGN---AEVTPLLNLKPV 61 (64)
T ss_dssp SCCCTTCEEEEECTTT---SSEEEEEEEEEETTT---------TEEEEEETTTTE---EEEEEGGGEECC
T ss_pred CCCCCCCEEEEEECCC---CCEEEEEEEEEcCCC---------CEEEEEEEecCC---EEEEeHHHcEeC
Confidence 5899999999999432 489999999997421 235677766432 344554444444
No 19
>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A
Probab=29.10 E-value=22 Score=31.89 Aligned_cols=55 Identities=16% Similarity=0.305 Sum_probs=34.1
Q ss_pred HHHhhhhcCccccceeeeeeeccCCCcceeeEEEEEeecCCCCCCCCCCccceeeeccccCCCCCC
Q 003369 124 YYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKR 189 (825)
Q Consensus 124 Y~kAm~~~~ws~GMRFRM~FEtEDss~rry~GTItgVsd~DPvrWP~S~WR~LkV~WDE~~~~~~~ 189 (825)
..++.. ..+.+|+|++...... ....|||.=|...+- + .-.| +=|.||++. +.+.
T Consensus 4 ~~~~~~-~~~~vG~rv~V~~~g~----~~~~GtVryvG~~~~--~-~G~w--vGVElDep~-GKnD 58 (95)
T 1lpl_A 4 LNEEAA-KNIMVGNRCEVTVGAQ----MARRGEVAYVGATKF--K-EGVW--VGVKYDEPV-GKND 58 (95)
T ss_dssp HHHHHH-HTCCTTCEEEECCTTS----CCEEEEEEEEECCSS--S-SSCE--EEEEESSSC-SSBS
T ss_pred hhhhhh-hcCCCCCEEEEccCCC----CceEEEEEEecccCC--C-CCEE--EEEEccCCC-CccC
Confidence 344444 5899999998743221 134677777765432 2 3467 779999986 4443
No 20
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=29.04 E-value=42 Score=26.36 Aligned_cols=28 Identities=7% Similarity=0.164 Sum_probs=21.8
Q ss_pred CccccceeeeeeeccCCCcceeeEEEEEeec
Q 003369 132 QISLGMRFRMMFETEESGTRRYMGTITGISD 162 (825)
Q Consensus 132 ~ws~GMRFRM~FEtEDss~rry~GTItgVsd 162 (825)
.|.+|+..--.|..+ ..||.++|++|..
T Consensus 1 ~wk~G~~c~A~~s~D---g~wYrA~I~~i~~ 28 (54)
T 3s6w_A 1 MWKPGDECFALYWED---NKFYRAEVEALHS 28 (54)
T ss_dssp CCCTTCEEEEEETTT---TEEEEEEEEEC--
T ss_pred CCCCCCEEEEEECCC---CCEEEEEEEEEeC
Confidence 489999999998433 4899999999954
No 21
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.02 E-value=46 Score=28.60 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=31.1
Q ss_pred cCccccceeeeeeeccCCCcceeeEEEEEeecCCCCCCCCCCccceeeecccc
Q 003369 131 NQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDES 183 (825)
Q Consensus 131 ~~ws~GMRFRM~FEtEDss~rry~GTItgVsd~DPvrWP~S~WR~LkV~WDE~ 183 (825)
..|.+|+++.-.|. + ..||.+||++|.+. ....|..++-
T Consensus 8 ~~~kvGd~clA~ws-D---g~~Y~A~I~~v~~~----------~~~~V~f~Dy 46 (74)
T 2equ_A 8 FDFKAGEEVLARWT-D---CRYYPAKIEAINKE----------GTFTVQFYDG 46 (74)
T ss_dssp CCCCTTCEEEEECS-S---SSEEEEEEEEESTT----------SSEEEEETTS
T ss_pred CCCCCCCEEEEECC-C---CCEEEEEEEEECCC----------CEEEEEEecC
Confidence 58999999999996 2 48999999999531 2467888765
No 22
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=27.75 E-value=25 Score=31.11 Aligned_cols=18 Identities=44% Similarity=0.619 Sum_probs=15.0
Q ss_pred ecCCCcCCCCeEEEEEcC
Q 003369 41 VSGKRLFAGDSVLFIRDE 58 (825)
Q Consensus 41 Vk~KrL~AGDsVVF~R~e 58 (825)
+..|+..+||+++|--..
T Consensus 19 a~~~~f~vGD~L~F~y~~ 36 (96)
T 2cbp_A 19 PKGKRFRAGDILLFNYNP 36 (96)
T ss_dssp TTTCCBCTTCEEEEECCT
T ss_pred ccCceEcCCCEEEEEecC
Confidence 567899999999997543
No 23
>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton associated protein, ckapi, structural genomics; NMR {Mus musculus} SCOP: b.34.10.1
Probab=24.62 E-value=38 Score=31.42 Aligned_cols=49 Identities=24% Similarity=0.328 Sum_probs=30.5
Q ss_pred cCccccceeeeeeeccCCCcceeeEEEEEeecCCCCCCCCCCccceeeeccccCCCCCC
Q 003369 131 NQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKR 189 (825)
Q Consensus 131 ~~ws~GMRFRM~FEtEDss~rry~GTItgVsd~DPvrWP~S~WR~LkV~WDE~~~~~~~ 189 (825)
..+.+|+|++...... ....|||.=|...+. + .-.| +=|.||++. +.+.
T Consensus 31 ~~~~VG~RV~V~~~g~----~~~~GtVryvG~v~~--~-~G~w--vGVElDep~-GKnD 79 (113)
T 1whg_A 31 SAISVGSRCEVRAPDH----SLRRGTVMYVGLTDF--K-PGYW--VGVRYDEPL-GKND 79 (113)
T ss_dssp TTSCSSCEEEECCSSS----SCEEEEEEEEEECSS--S-SSEE--EEEEESSSC-CSBB
T ss_pred hcCCCCCEEEEecCCC----cceEEEEEEecccCC--C-CCEE--EEEEecCCC-CccC
Confidence 5899999998753221 124566666554432 2 2456 779999986 4443
No 24
>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis}
Probab=24.56 E-value=36 Score=32.99 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=36.1
Q ss_pred CccEEEEeecCCCeeEeeEEEcCCCcccc--cccccceeecCCCcCCCCeEEE
Q 003369 4 PAQELMARDLHDNIWTFRHIYRGQPKRHL--LTTGWSLFVSGKRLFAGDSVLF 54 (825)
Q Consensus 4 P~QeLvarDlhGk~W~FRhiYRG~PkRhl--LTtGWS~FVk~KrL~AGDsVVF 54 (825)
|-|.--+.| |+..|.+-.+.+|.-+..+ .+.|+.....++.|.+||.++|
T Consensus 78 PGq~S~iHd-H~~s~~~~~VL~G~l~e~~y~~~~~~~~~~~~~~l~~G~~~~~ 129 (171)
T 3eqe_A 78 PNKETTVHD-HGQSIGCAMVLEGKLLNSIYRSTGEHAELSNSYFVHEGECLIS 129 (171)
T ss_dssp TTCBCCEEC-CTTCEEEEEEEESEEEEEEEEECSSSEEEEEEEEEETTCEEEE
T ss_pred CCCCccccc-CCCceEEEEEEeeeEEEEEeecCCCceeecceEEeCCCcEEEe
Confidence 555556676 8888999999999865433 3467777777888999997543
No 25
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=24.11 E-value=59 Score=28.73 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=36.4
Q ss_pred cCccccceeeeeeeccCCCcceeeEEEEEeecCCCCCCCCCCccceeeeccccCCCCCCCcccccccccc
Q 003369 131 NQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRNRVSIWEIEPV 200 (825)
Q Consensus 131 ~~ws~GMRFRM~FEtEDss~rry~GTItgVsd~DPvrWP~S~WR~LkV~WDE~~~~~~~eRVSPWEIEPv 200 (825)
..|.+|+.+.-.|..+ ..||.++|++|.... ..+.|...+-+ +.+.|..=+|.|+
T Consensus 9 ~~~kvGd~C~A~ys~D---g~wYrA~I~~i~~~~---------~~~~V~fiDYG---N~E~V~~~~Lrp~ 63 (88)
T 1g5v_A 9 QQWKVGDKCSAIWSED---GCIYPATIASIDFKR---------ETCVVVYTGYG---NREEQNLSDLLSP 63 (88)
T ss_dssp CCCCSSCEEEEECTTT---CCEEEEEEEEEETTT---------TEEEEEETTTC---CEEEEEGGGCBCC
T ss_pred CCCCCCCEEEEEECCC---CCEEEEEEEEecCCC---------CEEEEEEecCC---CEEEEcHHHcccC
Confidence 5899999999999422 489999999996421 23467765533 2345554455544
No 26
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=23.67 E-value=49 Score=29.04 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=16.6
Q ss_pred CCcCCCCeEEEEEc-CCCcE-EEEEEe
Q 003369 44 KRLFAGDSVLFIRD-EKQQL-LLGIRR 68 (825)
Q Consensus 44 KrL~AGDsVVF~R~-e~geL-~vGIRR 68 (825)
++|++||.|.|... .+|.+ ...|++
T Consensus 60 ~~lk~Gd~V~F~~~~~~~~~~it~i~~ 86 (88)
T 2vb2_X 60 SEIKTGDKVAFNFVQQGNLSLLQDIKV 86 (88)
T ss_dssp CCCCTTCEEEEEEEEETTEEEEEEEEE
T ss_pred hcCCCCCEEEEEEEEeCCEEEEEEEEe
Confidence 58999999999643 34554 444443
No 27
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=23.40 E-value=1.8e+02 Score=25.84 Aligned_cols=55 Identities=15% Similarity=0.184 Sum_probs=33.5
Q ss_pred cCccccceeeeeeeccCCCcceeeEEEEEeecCCCCCCCCCCccceeeeccccC--CCCCCC
Q 003369 131 NQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDEST--AGEKRN 190 (825)
Q Consensus 131 ~~ws~GMRFRM~FEtEDss~rry~GTItgVsd~DPvrWP~S~WR~LkV~WDE~~--~~~~~e 190 (825)
..+.+|+|++...... .....|||.=|...++.....-.| +=|+|||+. .+.+.-
T Consensus 6 ~~~~VG~rV~V~~~~~---~~~~~GtVryvG~v~~~~~~~G~w--vGVElDep~~~~GKnDG 62 (95)
T 1whl_A 6 SGIDVGCPVKVQLRSG---EEKFPGVVRFRGPLLAERTVSGIF--FGVELLEEGRGQGFTDG 62 (95)
T ss_dssp CCCCSSCEEEEECSSS---SCEEEEEEEEECCCCSSSSCCCCC--EEEEECSSSCSCCSSTT
T ss_pred ccCcCCCEEEEecCCC---ccceeEEEEEeCccCcccCCCceE--EEEEeCCCcccCCCCCC
Confidence 4688999998753320 012567777777655322334456 678999995 444443
No 28
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=22.92 E-value=52 Score=28.32 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=16.4
Q ss_pred CCcCCCCeEEEEEc-CCCcE-EEEEEe
Q 003369 44 KRLFAGDSVLFIRD-EKQQL-LLGIRR 68 (825)
Q Consensus 44 KrL~AGDsVVF~R~-e~geL-~vGIRR 68 (825)
++|++||.|.|.-. .+|.+ ...|++
T Consensus 52 ~~lk~Gd~V~F~~~~~~~~~~it~i~~ 78 (80)
T 2qcp_X 52 SEIKTGDKVAFNFVQQGNLSLLQDIKV 78 (80)
T ss_dssp CCCCTTCEEEEEEEEETTEEEEEEEEE
T ss_pred hcCCCCCEEEEEEEEeCCEEEEEEEEe
Confidence 58999999999643 34554 444443
No 29
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=22.28 E-value=75 Score=30.01 Aligned_cols=58 Identities=14% Similarity=0.255 Sum_probs=36.4
Q ss_pred CceEEEEcCCCCCCccccchHHHHH----hhhhcCccccceeeeeeeccCCC-cceeeEEEEEee
Q 003369 102 SPFTVFYNPRASPSEFVVPLAKYYK----AVHSNQISLGMRFRMMFETEESG-TRRYMGTITGIS 161 (825)
Q Consensus 102 spFtV~Y~PRas~sEFVVp~~kY~k----Am~~~~ws~GMRFRM~FEtEDss-~rry~GTItgVs 161 (825)
..++|.|.--- .+|-.||.+.+.- +.. ..+++|+.|......+|.. -.||.|+|+.+.
T Consensus 28 d~~~V~f~n~w-~~~~~vp~~~vRlpP~~~~~-~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~k 90 (128)
T 3h8z_A 28 DSVTIFFENNW-QSERQIPFGDVRLPPPADYN-KEITEGDEVEVYSRANEQEPCGWWLARVRMMK 90 (128)
T ss_dssp SEEEEEETTCT-TCCEEEEGGGEECCCCC-----CCCTTCEEEEEECC---CCCEEEEEEEEEEE
T ss_pred CcEEEEEcccc-CcceEechhhEEcCCCcccc-cCCCCCCEEEEEecCCCCCcCccEEEEEEEee
Confidence 34788885321 2366666655432 112 5789999999988766543 479999999995
No 30
>3eli_A AHSA1, AHA1 domain protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} SCOP: d.129.3.5
Probab=22.13 E-value=77 Score=28.36 Aligned_cols=42 Identities=10% Similarity=0.112 Sum_probs=30.2
Q ss_pred cCccccceeeeeeeccCCCcceeeEEEEEeecCCCCCCCCCCccceeeeccc
Q 003369 131 NQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDE 182 (825)
Q Consensus 131 ~~ws~GMRFRM~FEtEDss~rry~GTItgVsd~DPvrWP~S~WR~LkV~WDE 182 (825)
..+.+|-+|++.+...+.....+.|+|+.+.+. |.|...|..
T Consensus 45 ~d~~~Gg~~~~~~~~~~G~~~~~~g~v~e~~p~----------~~l~~~~~~ 86 (152)
T 3eli_A 45 LDFTRLGPWFSVMVNGEGQRYKVSGQVTHVKPP----------QSVGFTWGW 86 (152)
T ss_dssp CCCSSSEEEEEEEECTTCCEEEEEEEEEEEETT----------TEEEEEEEE
T ss_pred EcccCCcEEEEEEECCCCCEEEEEEEEEEEcCC----------CEEEEEEee
Confidence 568899999988765554445689999999652 456666754
No 31
>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Probab=21.41 E-value=1.6e+02 Score=30.18 Aligned_cols=52 Identities=15% Similarity=0.231 Sum_probs=39.8
Q ss_pred EEEcCCCCCCccccchHHHHHhhhhcCccccceeeeeeeccCCCcceeeEEEEEeec
Q 003369 106 VFYNPRASPSEFVVPLAKYYKAVHSNQISLGMRFRMMFETEESGTRRYMGTITGISD 162 (825)
Q Consensus 106 V~Y~PRas~sEFVVp~~kY~kAm~~~~ws~GMRFRM~FEtEDss~rry~GTItgVsd 162 (825)
.||.|.... .+.++.+.+.-..+-.+..+|++|+. |.++ ...|.++|+.++.
T Consensus 7 ~f~~~~~~~-~~~L~~~~~~Hl~~VLRl~~Gd~v~l-~dg~---g~~~~a~I~~i~~ 58 (257)
T 3kw2_A 7 LFYAPDIEQ-SDRLPDDEAGHILRVLRMQAGDRLRL-TDGR---GSFFDAVIETADR 58 (257)
T ss_dssp EEECTTTTT-CSBCCHHHHHHHHTTSCCCTTCEEEE-ECSB---SEEEEEEEEEECS
T ss_pred EEEcCCCCC-eEEeCHHHHHHHHHhccCCCCCEEEE-EECC---CCEEEEEEEEeeC
Confidence 588887654 78888888777666569999999998 4443 4678999998854
Done!