BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003370
(825 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZSB5|UBP10_ARATH Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana
GN=UBP10 PE=2 SV=2
Length = 923
Score = 1031 bits (2666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/823 (62%), Positives = 634/823 (77%), Gaps = 30/823 (3%)
Query: 4 VVVKAMIWKCVEIWKKGRTMFWYLSKSGKSFFVGGPALPRKMISEGIVNEK-RVEVFXLC 62
V+V +WK R + WY GGP + RK+I +G VEV+ LC
Sbjct: 109 VLVPKQVWK--------RLVEWY---------SGGPPIERKLICQGFYTRSYSVEVYPLC 151
Query: 63 LKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQ 122
L L D RD S+TVIRL K+AS R+LYEKVC + G+ QEKA IWDYF+K+++ +S +
Sbjct: 152 LMLTDGRDESRTVIRLGKQASIRELYEKVCAMTGVPQEKAHIWDYFDKRKNGLLDPLSYK 211
Query: 123 TLDDAMLQMDQDILLEVQ---VDNGISMDSTGNDLALVPIEPSRSSLTIAGGPALSNGHT 179
+L+++ L MDQDIL+EV + +M STGN+LALVP+EPSRS +TIAGGP LSNGH+
Sbjct: 212 SLEESSLHMDQDILVEVDGLSSSSQSAMSSTGNELALVPLEPSRSIVTIAGGPTLSNGHS 271
Query: 180 TGYRFNQYPGSSFGSTFMDMDDGYDSYNTAKKGEKGGLAGLQNLGNTCFMNSALQCLVHT 239
T F+ +P DDG DS + KGEKGGLAGL NLGNTCFMNSALQCL HT
Sbjct: 272 TTSNFSLFP------RITSEDDGRDSLSILGKGEKGGLAGLSNLGNTCFMNSALQCLAHT 325
Query: 240 PDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAP 299
P + +YFL DYSD+IN +NPLGM GELA+AFGDLL+KLWSSGR AVAPRAFK KLARFAP
Sbjct: 326 PPIVEYFLQDYSDDINRDNPLGMCGELAIAFGDLLKKLWSSGRNAVAPRAFKTKLARFAP 385
Query: 300 QFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARND 359
QFSGYNQHDSQELLAFLLDGLHEDLN+VK+KPYIE+KDS RPD+EVA E W HKARND
Sbjct: 386 QFSGYNQHDSQELLAFLLDGLHEDLNKVKRKPYIELKDSDSRPDDEVAEELWNYHKARND 445
Query: 360 SLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMP 419
S+IVDV QGQYKSTLVCPVC K+SITFDPFMYL++PLPST+TR+MT+TVFY +GS LPMP
Sbjct: 446 SVIVDVCQGQYKSTLVCPVCGKISITFDPFMYLSVPLPSTLTRSMTITVFYCDGSRLPMP 505
Query: 420 FTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHI 479
+TV + K G +DLI AL TACCL DE LLLAEVY+H+IFR+FE P + +S+IKDDEHI
Sbjct: 506 YTVIVPKQGSIRDLITALGTACCLAEDESLLLAEVYDHKIFRYFEIPLDSLSAIKDDEHI 565
Query: 480 VAYRFDRKQGG--KIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADIDI 537
VAYR ++ G K KLEI++ QE++ D ++GS+ KLFG P VTY+ E LSG DID
Sbjct: 566 VAYRLNQIPKGSRKAKLEILHGGQERAVLDSVRGSDVKLFGTPFVTYVNTEPLSGTDIDA 625
Query: 538 AVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLS 597
+S LSPL + ++ +K H G +NG L + + ++ S +T E+++ RELSF++
Sbjct: 626 VISGFLSPLHKVHAPSKIHNGSDNGHLADATVDQASGILSSPDT-EIDNASDRELSFRIF 684
Query: 598 LTDERISSCKPIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTR 657
LTDER + KP+Q +S + PG +VL++W + HE YD SY+ DLP VHKT F+ KKTR
Sbjct: 685 LTDERGLNIKPLQSESSISPGTVTRVLVEWNEGEHERYDSSYLSDLPEVHKTSFSAKKTR 744
Query: 658 QEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSR 717
QE+ISLFSCL+AFL EEPLGPDDMW+CP CKEHRQA KKLDLW LPD+LVFHLKRF+YSR
Sbjct: 745 QESISLFSCLEAFLAEEPLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSR 804
Query: 718 YLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYAKLIDEN 777
YLKNK+DTFVNFP+ +LDLSKY+K+K+G+SY+Y+L+A+SNHYGGLGGGHYTAYAKLID+N
Sbjct: 805 YLKNKIDTFVNFPVHDLDLSKYVKNKNGQSYLYELYAVSNHYGGLGGGHYTAYAKLIDDN 864
Query: 778 RWYHFDDSHVSPVSEGDIKTSAAYVLFYRRVKSKTKAEMAETS 820
+WYHFDDSHVS V+E +I+ SAAYVLFYRRV+S+T+ + AE S
Sbjct: 865 KWYHFDDSHVSSVNESEIRNSAAYVLFYRRVRSETETQTAEMS 907
>sp|Q93Y01|UBP9_ARATH Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabidopsis thaliana
GN=UBP9 PE=2 SV=1
Length = 910
Score = 1030 bits (2662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 516/812 (63%), Positives = 630/812 (77%), Gaps = 25/812 (3%)
Query: 15 EIWKKGRTMFWYLSKSGKSFFVGGPALPRKMISEGIVNEK-RVEVFXLCLKLIDSRDNSQ 73
E+WK R + WY GGP + RK+I +G VEV+ LCL L D RD S+
Sbjct: 114 EVWK--RLVEWY---------SGGPPIERKLICQGFYTRSYSVEVYPLCLMLTDGRDESR 162
Query: 74 TVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQ 133
TVIRL K+AS R+LYEKVC L G+ QEKA IWDYF+K+++ +S ++L+++ L MDQ
Sbjct: 163 TVIRLGKQASIRELYEKVCALTGVPQEKAHIWDYFDKRKNGLLDSLSYKSLEESSLHMDQ 222
Query: 134 DILLEVQ--VDNGISMDSTGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGSS 191
DILLEV + +M STGN+LALVP+EPSRSS+TIAGGP LSNGH+T F+ +P
Sbjct: 223 DILLEVDGSSSSQSAMSSTGNELALVPLEPSRSSVTIAGGPTLSNGHSTTSNFSLFP--- 279
Query: 192 FGSTFMDMDDGYDSYNTAKKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYS 251
DDG +S + KGEKGGLAGL NLGNTCFMNSALQCL HTP + +YFL DYS
Sbjct: 280 ---RITSEDDGSNSLSILGKGEKGGLAGLSNLGNTCFMNSALQCLAHTPPIVEYFLQDYS 336
Query: 252 DEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQE 311
D+IN +NPLGM GELA+AFGDLL+KLWSSGR +VAPRAFK KLARFAPQFSGYNQHDSQE
Sbjct: 337 DDINRDNPLGMCGELAIAFGDLLKKLWSSGRNSVAPRAFKTKLARFAPQFSGYNQHDSQE 396
Query: 312 LLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYK 371
LLAFLLDGLHEDLN+VK+KPYIE+KDS RPD+EVA E W HKARNDS+IVDV QGQYK
Sbjct: 397 LLAFLLDGLHEDLNKVKRKPYIELKDSDSRPDDEVAEELWNYHKARNDSVIVDVCQGQYK 456
Query: 372 STLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCK 431
STLVCP C K+SITFDPFMYL++PLPST+TR+MTVTVFY +GS LPMP+TV + K+G +
Sbjct: 457 STLVCPACGKISITFDPFMYLSVPLPSTLTRSMTVTVFYCDGSHLPMPYTVIVPKNGSIR 516
Query: 432 DLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDR--KQG 489
DLI AL TAC L DE LLLAEVY+H+IF++FENP + +SSIKDDEHIVAYR ++ K
Sbjct: 517 DLITALGTACLLAEDESLLLAEVYDHKIFKYFENPLDSLSSIKDDEHIVAYRLNQMPKGS 576
Query: 490 GKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADIDIAVSKLLSPLRRT 549
GK KLEI++ Q++ + ++G + KLFG P VTY+ E LSGADID +S+ LSPL +
Sbjct: 577 GKAKLEILHGGQKRPILESVRGRDVKLFGTPFVTYVNTEPLSGADIDAVLSRFLSPLHKV 636
Query: 550 YSSAKAHGGKENGFLPE-VIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKP 608
++ +K H G ENG LP+ +DE S S E++D RELSF++ LTDER + KP
Sbjct: 637 HAPSKIHNGSENGHLPDATVDEASEIL--SSPDTEIDDASDRELSFRIFLTDERGLNFKP 694
Query: 609 IQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLD 668
+Q +S + G +VL++W + HE YD SY+ DLP VHKT F+ KKTRQE+ISLFSCL+
Sbjct: 695 LQSESSISLGIATRVLVEWNEGEHERYDSSYLSDLPEVHKTSFSAKKTRQESISLFSCLE 754
Query: 669 AFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVN 728
AFL EEPLGPDDMW+CP CKEHRQA KKLDLW LPD+LVFHLKRF+YSRYLKNK+DTFVN
Sbjct: 755 AFLAEEPLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYLKNKIDTFVN 814
Query: 729 FPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVS 788
FP+ +LDLSKY+K+K+ +SY+Y+L+A+SNHYGGLGGGHYTAYAKLID+N WYHFDDSHVS
Sbjct: 815 FPVHDLDLSKYVKNKNDQSYLYELYAVSNHYGGLGGGHYTAYAKLIDDNEWYHFDDSHVS 874
Query: 789 PVSEGDIKTSAAYVLFYRRVKSKTKAEMAETS 820
V+E +IK SAAYVLFYRRV+S+T+ + E S
Sbjct: 875 SVNESEIKNSAAYVLFYRRVRSETETQTVEMS 906
>sp|Q9MAQ3|UBP11_ARATH Putative ubiquitin carboxyl-terminal hydrolase 11 OS=Arabidopsis
thaliana GN=UBP11 PE=3 SV=2
Length = 892
Score = 955 bits (2469), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/807 (61%), Positives = 599/807 (74%), Gaps = 39/807 (4%)
Query: 15 EIWKKGRTMFWYLSKSGKSFFVGGPALPRKMISEGIVNEK-RVEVFXLCLKLIDSRDNSQ 73
E+W+K + WY GGP +PRK+IS+G + VEV+ LCL L DSRD S
Sbjct: 112 EVWRK--LVKWY---------KGGPPVPRKLISQGFYTKSFSVEVYLLCLTLTDSRDEST 160
Query: 74 TVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQ 133
T+IRLSK+AS QLYE VC +G+ +EKARIWDYF K++S S+Q++++A LQ +Q
Sbjct: 161 TIIRLSKQASIGQLYEMVCAGKGVAKEKARIWDYFEKKKSVLLDPSSEQSVEEAGLQFNQ 220
Query: 134 DILLEV--QVDNGISMDSTGNDLALVPIEPSRSSL--TIAGGPALSNGHTTGYRFNQYPG 189
DILLEV + M N+LA+VP+EP RS + GG LSNGH+ G++F+ +
Sbjct: 221 DILLEVDGSASSQFVMSLAENELAMVPLEPMRSDAMDIVRGGGTLSNGHSNGFKFSFFGR 280
Query: 190 SSFGSTFMDMDDGYDSYNTAKKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD 249
++F S T KGEK GL GLQNLGNTCFMNS LQCL HTP + +YFL D
Sbjct: 281 NTFKDDV--------SSRTFGKGEKRGLGGLQNLGNTCFMNSTLQCLAHTPPIVEYFLQD 332
Query: 250 YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDS 309
Y +IN +NPLGM GELA+AFG+LLRKLWSSG+ VAPRAFK KLARFAPQFSGYNQHDS
Sbjct: 333 YRSDINAKNPLGMRGELAIAFGELLRKLWSSGQNTVAPRAFKTKLARFAPQFSGYNQHDS 392
Query: 310 QELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQ 369
QE+LAFLLDGLHEDLN+VK+KPYIE KDS GRPD+EVA E WK HKARNDS+IVDVFQGQ
Sbjct: 393 QEMLAFLLDGLHEDLNKVKRKPYIEAKDSDGRPDDEVAEEKWKYHKARNDSVIVDVFQGQ 452
Query: 370 YKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGC 429
YKSTLVCP C K+SITFDPFMYL+LPLPS+ TR+MTVTVFY +GS LPMP+TVT+ K G
Sbjct: 453 YKSTLVCPDCGKISITFDPFMYLSLPLPSSRTRSMTVTVFYGDGSHLPMPYTVTVPKDGS 512
Query: 430 CKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDR--K 487
C+DL AL TACCL DE LLLAEVY+H++F+++ENP EL++ IKD+EHIVAYRF + K
Sbjct: 513 CRDLSNALGTACCLDNDESLLLAEVYDHKVFKYYENPRELLNGIKDNEHIVAYRFKQMHK 572
Query: 488 QGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADIDIAVSKLLSPLR 547
GK+KLEI++ QEKS+ +G K FG PLVTY+ +E LSG DI ++S LLSPLR
Sbjct: 573 GPGKVKLEILHGEQEKSSD---RGP--KCFGTPLVTYINKEPLSGTDIATSISGLLSPLR 627
Query: 548 RTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCK 607
R + S + G ENG +P DE S S E D RELS L L D + +
Sbjct: 628 RVHMSCVVNSGNENGHVP---DESSRSILSRDTETEDND---RELSLSL-LRDYYSFNLQ 680
Query: 608 PIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCL 667
P++ DS++ PG KVL+ W + HE YD SY+ DLP VHK KKT QE ISLFSCL
Sbjct: 681 PLESDSVVNPGSVTKVLVKWNEKEHEKYDSSYLNDLPKVHKN-VLAKKTMQEGISLFSCL 739
Query: 668 DAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFV 727
+AFL EEPLGPDDMWYCP CKEHRQA KKLDLW LPD+LVFHLKRF+YSRY KNK+DT V
Sbjct: 740 EAFLAEEPLGPDDMWYCPGCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYFKNKIDTLV 799
Query: 728 NFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHV 787
NF I +LDLSKY+K++DG+SY+Y+L+AISNHYGGLGGGHYTAYAKL+DE +WY+FDDS V
Sbjct: 800 NFHIHDLDLSKYVKNEDGQSYLYELYAISNHYGGLGGGHYTAYAKLMDETKWYNFDDSRV 859
Query: 788 SPVSEGDIKTSAAYVLFYRRVKSKTKA 814
S V+E +IKTSAAYVLFY+RVKS ++
Sbjct: 860 SAVNESEIKTSAAYVLFYQRVKSDSET 886
>sp|O22207|UBP5_ARATH Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana
GN=UBP5 PE=1 SV=2
Length = 924
Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/809 (50%), Positives = 534/809 (66%), Gaps = 37/809 (4%)
Query: 32 KSFFVGGPALPRKMISEGIVN-EKRVEVFXLCLKLIDSRDNSQTVIRLSKKASTRQLYEK 90
+S++ GGP L R++IS G+ E VEV+ L L+L+ + + IR+SKK + R+L+ +
Sbjct: 130 RSWYGGGPTLARRVISSGLSQTELAVEVYPLRLQLLLMPKSDHSAIRISKKETIRELHRR 189
Query: 91 VCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDNGI----- 145
C++ ++ E RIWDY+ Q+ + D+ D+TLDDA LQMDQDIL+EV NG
Sbjct: 190 ACEIFDLDSEHVRIWDYYGHQKYSLMNDL-DKTLDDANLQMDQDILVEVLDINGTLSSAH 248
Query: 146 --SMDSTG---NDLALVPIEPSRSSLTIAGGPALS-NGHTTGYRFNQYPGSSFGSTFMDM 199
S G D + IEPS+SSL AGG + S N TG +F
Sbjct: 249 IQSAQENGLVDGDSTSILIEPSKSSLAAAGGFSSSRNAFRTG-------SVEVSQSF--- 298
Query: 200 DDGYDSYNTAKKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENP 259
D+ Y S +G GL GL NLGNTCFMNSA+QCLVHTP+ A YF DY EIN +NP
Sbjct: 299 DNTYSSTGVTTRGSTAGLTGLLNLGNTCFMNSAIQCLVHTPEFASYFQEDYHQEINWQNP 358
Query: 260 LGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDG 319
LGM GELALAFGDLLRKLW+ GR +APR FK KLARFAPQFSGYNQHDSQELLAFLLDG
Sbjct: 359 LGMVGELALAFGDLLRKLWAPGRTPIAPRPFKAKLARFAPQFSGYNQHDSQELLAFLLDG 418
Query: 320 LHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVC 379
LHEDLNRVK KPYI +D+ GRPDEEVA+E WKNH ARNDS+IVDV QGQYKSTLVCP+C
Sbjct: 419 LHEDLNRVKHKPYINSRDADGRPDEEVADEFWKNHIARNDSIIVDVCQGQYKSTLVCPIC 478
Query: 380 SKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALST 439
+KVS+TFDPFMYL+LPL TR +TVTVF + + LP TV + K G C+DLI AL+
Sbjct: 479 NKVSVTFDPFMYLSLPLQFNTTRAITVTVFSCDKTALPSTITVNVSKQGRCRDLIQALTN 538
Query: 440 ACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNR 499
AC LK E L LAE+ N+ I R FE+P +SSIKDD+H+ AY+ + L +V R
Sbjct: 539 ACSLKQSEELKLAEIRNNFIHRLFEDPLIPLSSIKDDDHLAAYKLSKSSENTTLLRLVLR 598
Query: 500 WQEKSASDYLKGSERKLFGAPLVTYLE-EEHLSGADIDIAVSKLLSPLRRTYSSAKAHGG 558
+++ A + + K G PL++ + L+ I V +LSP RR S K G
Sbjct: 599 RRDQKAGERESTVQLKPCGTPLLSSASCGDALTKGKIHCLVQNMLSPFRREESVGKK--G 656
Query: 559 KENGFLPEVIDELSNSHNESVETAELE--------DLCSRELSFQLSLTDERISSCKPIQ 610
+ +PE N+ E + L+ DL + +LS QL D + + +
Sbjct: 657 NSDSSIPERRSARFNNTEEEDKVGGLKKAKKSNSSDLGASKLSLQLIDEDNKTINLPDNE 716
Query: 611 KDSILKPGKH-IKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDA 669
+++ P + + LDWT ++ +YD + ++ LP V K G T KK R E +SL++CL+A
Sbjct: 717 AEAMKLPSSATVTIYLDWTPELSGMYDITCLESLPEVLKYGPTTKKARSEPLSLYACLEA 776
Query: 670 FLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNF 729
FL EEPL PD+MW+CPQC E RQA+KKLDLW LP+VLV HLKRFSYSR +K+KL+TFVNF
Sbjct: 777 FLREEPLVPDEMWFCPQCNERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNF 836
Query: 730 PILNLDLSKYMKSKD-GESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVS 788
PI +LDL+KY+ +K+ + +Y+L+A++NHYGG+G GHYTA+ KL+D++RWY+FDDSH+S
Sbjct: 837 PIHDLDLTKYVANKNLSQPQLYELYALTNHYGGMGSGHYTAHIKLLDDSRWYNFDDSHIS 896
Query: 789 PVSEGDIKTSAAYVLFYRRVKSKTKAEMA 817
++E D+K+ AAYVLFYRR KS +M
Sbjct: 897 HINEDDVKSGAAYVLFYRR-KSDAGGKMT 924
>sp|Q9C585|UBP8_ARATH Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana
GN=UBP8 PE=1 SV=2
Length = 871
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/779 (48%), Positives = 490/779 (62%), Gaps = 51/779 (6%)
Query: 44 KMISEGIVNEKRVEVFXLCLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKAR 103
K S G V+ R +V+ + L+L ++ + +++ KK ++ + + + CK+ ++ E+ R
Sbjct: 128 KSFSAGGVD--RGDVYPVQLRLSVLQETNSLAVKICKKDNSVECFRRACKIFSLDSEQLR 185
Query: 104 IWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDNGISMDSTGNDLALVPIEPSR 163
IWD + DVS+ D Q DQ+ILLE+Q+ G+S + + L +
Sbjct: 186 IWDISGQTTLFFESDVSNSK--DCQQQADQEILLELQI-YGLS-----DSIKLKESKKED 237
Query: 164 SSLTIAGGPALSNGHTTG--YRFNQYPGSSFGSTFMDMDDGYDSYNTAKKGEKG--GLAG 219
S G ++NG G +RF + SF K GE G GL G
Sbjct: 238 GSTQQTNG--ITNGMNGGTVFRFGRSNSLSF---------------LGKAGEAGTLGLTG 280
Query: 220 LQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWS 279
LQNLGNTCFMNS+LQCL HTP L +FLG+YS EIN +NPLGM GE+ALAFGDLLR LW+
Sbjct: 281 LQNLGNTCFMNSSLQCLAHTPKLVDFFLGEYSKEINLDNPLGMKGEIALAFGDLLRSLWA 340
Query: 280 SGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSG 339
G + VAPR FK KLARFAPQFSG+NQHDSQELLAFLLDGLHEDLNRVK KPY+E KD
Sbjct: 341 PGASTVAPRTFKAKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKNKPYVEAKDGD 400
Query: 340 GRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPST 399
GRPD EVA+E W+NH ARNDS+IVDV QGQYKSTLVCP+C KVS+ FDPFMYL+LPLP T
Sbjct: 401 GRPDAEVADEYWRNHVARNDSIIVDVCQGQYKSTLVCPICKKVSVMFDPFMYLSLPLPCT 460
Query: 400 VTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQI 459
RTM +TV A+GS LP+P TV + K G +DL AL TAC L +E LL+ EVYN++I
Sbjct: 461 SMRTMDLTVMSADGSSLPIPLTVNVPKFGKFEDLHKALVTACSLPEEETLLVTEVYNNRI 520
Query: 460 FRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSER---KL 516
RF E P + ++ I+D + +V YR + ++ +K ++ G K
Sbjct: 521 IRFLEEPTDSLTLIRDGDKLVVYRLKKDANNS---PLIVYMHQKLEEQFISGKSSPTWKA 577
Query: 517 FGAPLVTYLEEEHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHN 576
FG PLV+ L + +G+D++ KLLS + + EN E D+
Sbjct: 578 FGIPLVSRLCDVE-NGSDVENLYLKLLSSFKMPTEFFTEN--LENPTEEEATDKTDTDGT 634
Query: 577 ESVETAELEDLCSRELS-----FQLSLTDERISSCKP-IQKDSILKPGKHIKVLLDWTDD 630
SVE D+ S +L LTD+R +S + + K+ + K + VL W
Sbjct: 635 TSVEDTNSTDVKETTESLPDPVLRLYLTDDRGNSIEAEMLKEKPVNKSKRLNVLARWPVK 694
Query: 631 VHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEH 690
++YD + LP V K+G K QE++SLF CL+AFLTEEPLGPDDMWYCP CKEH
Sbjct: 695 ELDVYDTCLLSSLPEVSKSG---TKRPQESVSLFKCLEAFLTEEPLGPDDMWYCPGCKEH 751
Query: 691 RQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGE-SYV 749
RQA KKLDLW LP++LV HLKRFSYSR++KNKL+ +V+FP+ NLDLS Y+ K+G+ +Y
Sbjct: 752 RQAIKKLDLWRLPEILVIHLKRFSYSRFMKNKLEAYVDFPLDNLDLSSYISYKNGQTTYR 811
Query: 750 YDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRV 808
Y L+AISNHYG +GGGHYTAY +RWY FDDSHV +S+ IKTSAAYVLFY+R+
Sbjct: 812 YMLYAISNHYGSMGGGHYTAYVHH-GGDRWYDFDDSHVHQISQEKIKTSAAYVLFYKRL 869
>sp|B2GUZ1|UBP4_RAT Ubiquitin carboxyl-terminal hydrolase 4 OS=Rattus norvegicus
GN=Usp4 PE=1 SV=1
Length = 961
Score = 514 bits (1325), Expect = e-145, Method: Compositional matrix adjust.
Identities = 328/842 (38%), Positives = 450/842 (53%), Gaps = 67/842 (7%)
Query: 14 VEIWKKGRTMFWYLSKSGKSFFVGGPALPRKMISEGI-VNEKRVEVFXLCLKLIDSRDNS 72
E W K + WY G+ V RK++ G+ V +VEV+ L LKL ++ D +
Sbjct: 98 TEAWNK--LLNWYGCVEGQQPIV------RKVVEHGLFVKHCKVEVYLLELKLCENSDPT 149
Query: 73 QTVIRLSKKASTRQLYEK-VCKLRGIEQEK-ARIWDYFNKQRSTSPLDVSDQTLDDAMLQ 130
+ KA T EK + KL I E+ R+W+ + + L D T+ DA L
Sbjct: 150 NVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKY-MSNTYEQLSKLDNTIQDAGLY 208
Query: 131 MDQDILLEVQVDNGI-------SMDSTGNDLALV-PIEPSRSSLTIAGGPALSNGHTTGY 182
Q +++E Q ++G S ST +PS S + ++NG +T
Sbjct: 209 QGQVLVIEPQNEDGTWPRQTLQSKSSTAPSRNFTTSSKPSASPYSSMSASLIANGDSTNS 268
Query: 183 RFNQYPGSSFGSTFMDMDDGYDSYNTAKKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDL 242
G S G Y+ + GL GL NLGNTCFMNSALQCL +T L
Sbjct: 269 SGMHNSGVSRGGA--GFSASYNCQEPPSPHIQPGLCGLGNLGNTCFMNSALQCLSNTGPL 326
Query: 243 AQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQF 301
+YFL D Y EIN +NPLGM GE+A A+ +L++++WS VAPR FK ++ RFAPQF
Sbjct: 327 TEYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDTHVAPRMFKTQVGRFAPQF 386
Query: 302 SGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSL 361
SGY Q DSQELLAF+LDGLHEDLNRVK+KPY+E KD+ GRPD VA E W+NH+ RNDS+
Sbjct: 387 SGYQQQDSQELLAFILDGLHEDLNRVKKKPYLEPKDANGRPDAVVAKEAWENHRLRNDSV 446
Query: 362 IVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFT 421
IVD F G +KSTLVCP C+KVS+TFDPF YLTLPLP R M V + A+ P+ +
Sbjct: 447 IVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRIMEVFLVPADPHCRPIQYR 506
Query: 422 VTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVA 481
VT+ G DL ALS + E +++ +VYNH+ + F+ E +S I + I
Sbjct: 507 VTVPLMGAISDLCEALSKLSGIAA-ENMVVTDVYNHRFHKIFQM-DEGLSHITPRDDIFV 564
Query: 482 YRF-DRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADIDIAVS 540
Y G + + ++EK + S L+G PL+ + + L+ + AV
Sbjct: 565 YEICTTPMDGSEYITLPVYFREKKSRPSSTSSGAVLYGQPLLVSVPKHRLTLESLYQAVC 624
Query: 541 KLLS-----PLRRTYSSAKAHGGKENGF--------------------LPEVIDELSNSH 575
+ +S PL + S+ G NG L EV + +S
Sbjct: 625 ERISRYIKQPLPEEFLSSPLEPGACNGSRGSYEGDEEEMDHQEEGKEQLSEVEESGEDSQ 684
Query: 576 ----NESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSILKPGKHIK------VLL 625
E+ + A+ R +F L ++SC +S+ GK +K + +
Sbjct: 685 GGDPTETTQKAKGPPRHKRLFTFSL------VNSCGTADINSLATDGKLLKLNSRSTLAI 738
Query: 626 DWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCP 685
DW + LY + H + +K ++ AI+L C++ F T E LG D WYCP
Sbjct: 739 DWDSETRSLYFDEQESEACEKHTSMSQPQKKKKAAIALRECIELFTTMETLGEHDPWYCP 798
Query: 686 QCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDG 745
CK+H+QATKK DLW LP +LV HLKRFSY+RY ++KLDT V FP+ L++S+++ +
Sbjct: 799 TCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPVRALNMSEFVCDRAA 858
Query: 746 ESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFY 805
YVYDL A+SNHYG +G GHYTAYAK +WY+FDDS VS SE I T AAYVLFY
Sbjct: 859 RPYVYDLIAVSNHYGAMGVGHYTAYAKNRLNGKWYYFDDSSVSLASEDQIVTKAAYVLFY 918
Query: 806 RR 807
+R
Sbjct: 919 QR 920
>sp|P35123|UBP4_MOUSE Ubiquitin carboxyl-terminal hydrolase 4 OS=Mus musculus GN=Usp4
PE=1 SV=3
Length = 962
Score = 513 bits (1320), Expect = e-144, Method: Compositional matrix adjust.
Identities = 328/846 (38%), Positives = 451/846 (53%), Gaps = 74/846 (8%)
Query: 14 VEIWKKGRTMFWYLSKSGKSFFVGGPALPRKMISEGI-VNEKRVEVFXLCLKLIDSRDNS 72
E W K + WY G+ V RK++ G+ V +VEV+ L LKL ++ D +
Sbjct: 98 AEAWNK--LLNWYGCVEGQQPIV------RKVVEHGLFVKHCKVEVYLLELKLCENSDPT 149
Query: 73 QTVIRLSKKASTRQLYEK-VCKLRGIEQEK-ARIWDYFNKQRSTSPLDVSDQTLDDAMLQ 130
+ KA T EK + KL I E+ R+W+ + + L D T+ DA L
Sbjct: 150 NVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKY-MSNTYEQLSKLDNTIQDAGLY 208
Query: 131 MDQDILLEVQVDNGI-------SMDSTGNDLALV-PIEPSRSSLTIAGGPALSNGHTTGY 182
Q +++E Q ++G S ST +PS S ++NG +T
Sbjct: 209 QGQVLVIEPQNEDGTWPRQSLQSKSSTAPSRNFTTSSKPSASPYCSVSASLIANGDSTNS 268
Query: 183 RFNQYPGSSFGSTFMDMDDGYDSYNTAKKGE---KGGLAGLQNLGNTCFMNSALQCLVHT 239
G SYN + + GL GL NLGNTCFMNSALQCL +T
Sbjct: 269 S-----GMHSSGVSRGGSGFSASYNCQEPPSPHIQPGLCGLGNLGNTCFMNSALQCLSNT 323
Query: 240 PDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFA 298
L +YFL D Y EIN +NPLGM GE+A A+ +L++++WS VAPR FK ++ RFA
Sbjct: 324 APLTEYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDTHVAPRMFKTQVGRFA 383
Query: 299 PQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARN 358
PQFSGY Q DSQELLAF+LDGLHEDLNRVK+KPY+E KD+ GRPD VA E W+NH+ RN
Sbjct: 384 PQFSGYQQQDSQELLAFILDGLHEDLNRVKKKPYLEPKDANGRPDAVVAKEAWENHRLRN 443
Query: 359 DSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPM 418
DS+IVD F G +KSTLVCP C+KVS+TFDPF YLTLPLP R M V + A+ P+
Sbjct: 444 DSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRIMEVFLVPADPQCRPI 503
Query: 419 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEH 478
+ VT+ G DL ALS + E +++ +VYNH+ + F+ E +S I +
Sbjct: 504 QYRVTVPLMGAISDLCEALSKLSGIAA-ENMVVTDVYNHRFHKIFQM-DEGLSHITPRDD 561
Query: 479 IVAYRF-DRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADIDI 537
I Y + G + + ++EK + S L+G PL+ + + L+ +
Sbjct: 562 IFVYEVCNTSMDGSECITLPVYFREKKSRPSSASSGAVLYGQPLLVSVPKHKLTLESLYQ 621
Query: 538 AVSKLLS-----PLRRTYSSAKAHGGKENGF---------------------LPEV---- 567
AV +S PL + S+ G NG L EV
Sbjct: 622 AVCDRISRYIKQPLPDEFLSSPLEPGACNGSRSSYEGDEEEEMDHQEEGKEQLSEVEGSG 681
Query: 568 IDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSILKPGKHIK----- 622
D+ + H+ES + + + R +F L ++SC +S+ GK +K
Sbjct: 682 EDDQGDDHSESAQKVKGQPRHKRLFTFSL------VNSCGTADINSLATDGKLLKLNSRS 735
Query: 623 -VLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDM 681
+ +DW + LY + H + +K ++ A++L C++ F T E LG D
Sbjct: 736 TLAIDWDSETRSLYFDEQESEACEKHLSMSQPQKKKKAAVALRECIELFTTMETLGEHDP 795
Query: 682 WYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMK 741
WYCP CK+H+QATKK DLW LP +LV HLKRFSY+RY ++KLDT V FP+ L++S+++
Sbjct: 796 WYCPTCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPVRALNMSEFVC 855
Query: 742 SKDGESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAY 801
+ YVYDL A+SNHYG +G GHYTAYAK +WY+FDDS VS SE I T AAY
Sbjct: 856 DRSARPYVYDLIAVSNHYGAMGVGHYTAYAKNRLNGKWYYFDDSSVSLASEDQIVTKAAY 915
Query: 802 VLFYRR 807
VLFY+R
Sbjct: 916 VLFYQR 921
>sp|Q9R085|UBP15_RAT Ubiquitin carboxyl-terminal hydrolase 15 OS=Rattus norvegicus
GN=Usp15 PE=1 SV=1
Length = 952
Score = 500 bits (1287), Expect = e-140, Method: Compositional matrix adjust.
Identities = 320/856 (37%), Positives = 463/856 (54%), Gaps = 108/856 (12%)
Query: 14 VEIWKKGRTMFWYLSKSGKSFFVGGPALPRKMISEGI-VNEKRVEVFXLCLKLIDSRDNS 72
E W K + WY + G + RK++ +G+ V +VEV+ LKL ++ + +
Sbjct: 94 TEGWNK--LVSWY------TLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKLCENGNMN 145
Query: 73 QTVIRLSKKASTRQLYEK-VCKLRGIEQEK-ARIWDYFNKQRSTSPLDVSDQTLDDAMLQ 130
V R KA T EK + K+ I EK AR+W+ + + PL+ D T+ DA L
Sbjct: 146 NVVTRRFSKADTIDTIEKEIRKIFNIPDEKEARLWNKY-MSNTFEPLNKPDSTIQDAGLY 204
Query: 131 MDQDILLEVQVDNGISMDSTGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGS 190
Q +++E + ++G T GP+ N + Y Y
Sbjct: 205 QGQVLVIEQKNEDG----------------------TWPRGPSAPNVKNSNYCLPSYTAY 242
Query: 191 SFGSTFMDMDDGYDSYNTAKKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD- 249
YD + E+ GL GL NLGNTCFMNSA+QCL +TP L +YFL D
Sbjct: 243 K----------NYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDK 292
Query: 250 YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDS 309
Y +E+N +NPLGM GE+A ++ +L++++WS + V PRAFK ++ RFAPQFSGY Q D
Sbjct: 293 YQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDC 352
Query: 310 QELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQ 369
QELLAFLLDGLHEDLNR+++KPYI++KD+ GRPD+ VA E W+NH RNDS+IVD+F G
Sbjct: 353 QELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGL 412
Query: 370 YKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGC 429
+KSTLVCP C+K+S+TFDPF YLTLPLP R++ V + + PM + V + K G
Sbjct: 413 FKSTLVCPECAKISVTFDPFCYLTLPLPMKKERSLEVYLVRMDPLAKPMQYKVIVPKIGN 472
Query: 430 CKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSI-KDDEHIVAYRFDRKQ 488
DL ALS + D+ +++ ++YNH+ R F L S + +DD ++ +R +
Sbjct: 473 ILDLCTALSALSGVPADK-MIVTDIYNHRFHRIFAMDENLSSIMERDDIYVFEININRTE 531
Query: 489 GGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADIDIAVSKLL----- 543
+ + V ++ S Y + LFG P + + + ++ + ++
Sbjct: 532 DTEHVVIPVCLREKFRHSSYTHHTGSSLFGQPFLMAVPRNNTEDKLYNLLLLRMCRYVKM 591
Query: 544 --------SPLR----RTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAEL------- 584
PLR + + +G E G E+ E +ES + EL
Sbjct: 592 STETEETDGPLRCCEDQNINGNGPNGIHEEGSPSEM--ETDEPDDESSQDQELPSENENS 649
Query: 585 --ED-----------LCSRE-------------LSFQL-SLTDERISSCKPIQK-----D 612
ED LC+ E +FQ +L + I+ K + D
Sbjct: 650 QSEDSVGGDNDSENGLCTEETCKGRLTGHKKRLFTFQFNNLGNTDINYIKDDTRHIRFDD 709
Query: 613 SILKPGKHIKVLLDWTDDVHELY-DPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFL 671
L+ + + LDW D+ + Y D + +D + K ++ + L C++ F
Sbjct: 710 RQLRLDERSFLALDWDPDLKKRYFDENAAEDFEKHESVEY--KPPKRPFVKLKDCIELFT 767
Query: 672 TEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPI 731
T+E LG +D WYCP CKEH+QATKKLDLW LP VLV HLKRFSYSRY+++KLDT V+FPI
Sbjct: 768 TKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPI 827
Query: 732 LNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVS 791
+LD+S+++ + + Y+L A+SNHYGG+GGGHYTA+AK D+ +WY+FDDS VS S
Sbjct: 828 SDLDMSEFLINPNAGPCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSSAS 887
Query: 792 EGDIKTSAAYVLFYRR 807
E I + AAYVLFY+R
Sbjct: 888 EDQIVSKAAYVLFYQR 903
>sp|Q13107|UBP4_HUMAN Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sapiens GN=USP4
PE=1 SV=3
Length = 963
Score = 499 bits (1286), Expect = e-140, Method: Compositional matrix adjust.
Identities = 327/847 (38%), Positives = 446/847 (52%), Gaps = 75/847 (8%)
Query: 14 VEIWKKGRTMFWYLSKSGKSFFVGGPALPRKMISEGI-VNEKRVEVFXLCLKLIDSRDNS 72
E W K + WY G+ V RK++ G+ V +VEV+ L LKL ++ D +
Sbjct: 98 TEAWNK--LLNWYGCVEGQQPIV------RKVVEHGLFVKHCKVEVYLLELKLCENSDPT 149
Query: 73 QTVIRLSKKASTRQLYEK-VCKLRGIEQEK-ARIWDYFNKQRSTSPLDVSDQTLDDAMLQ 130
+ KA T EK + KL I E+ R+W+ + + L D T+ DA L
Sbjct: 150 NVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKY-MSNTYEQLSKLDNTVQDAGLY 208
Query: 131 MDQDILLEVQVDNGISMDSTGNDLALVPIEPSRSSLT----------IAGGPALSNGHTT 180
Q +++E Q ++G T + PSR+ T ++NG +T
Sbjct: 209 QGQVLVIEPQNEDGTWPRQTLQSKS--STAPSRNFTTSPKSSASPYSSVSASLIANGDST 266
Query: 181 GYRFNQYPGSSFGSTFMDMDDGYDSYNTAKKGE---KGGLAGLQNLGNTCFMNSALQCLV 237
G SYN + + GL GL NLGNTCFMNSALQCL
Sbjct: 267 ST-----CGMHSSGVSRGGSGFSASYNCQEPPSSHIQPGLCGLGNLGNTCFMNSALQCLS 321
Query: 238 HTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLAR 296
+T L YFL D Y EIN +NPLGM GE+A A+ +L++++WS A VAPR FK ++ R
Sbjct: 322 NTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFKTQVGR 381
Query: 297 FAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKA 356
FAPQFSGY Q DSQELLAFLLDGLHEDLNRVK+KPY+E+KD+ GRPD VA E W+NH+
Sbjct: 382 FAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRL 441
Query: 357 RNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGL 416
RNDS+IVD F G +KSTLVCP C+KVS+TFDPF YLTLPLP R M V + A+
Sbjct: 442 RNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEVFLVPADPHCR 501
Query: 417 PMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDD 476
P + VT+ G DL ALS + E +++A+VYNH+ + F+ L + D
Sbjct: 502 PTQYRVTVPLMGAVSDLCEALSRLSGIAA-ENMVVADVYNHRFHKIFQMDEGLNHIMPRD 560
Query: 477 EHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADID 536
+ V G + + ++E+ + S L+G PL+ + + L+ +
Sbjct: 561 DIFVYEVCSTSVDGSECVTLPVYFRERKSRPSSTSSASALYGQPLLLSVPKHKLTLESLY 620
Query: 537 IAVSKLLS-----PLRRTYSSAKAHGGKENGF---------------------LPEV--- 567
AV +S PL + S+ G NG L E
Sbjct: 621 QAVCDRISRYVKQPLPDEFGSSPLEPGACNGSRNSCEGEDEEEMEHQEEGKEQLSETEGS 680
Query: 568 -IDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSILKPGKHIK---- 622
DE N +E+ + C + L F SL ++S +S+ GK +K
Sbjct: 681 GEDEPGNDPSETTQKKIKGQPCPKRL-FTFSL----VNSYGTADINSLAADGKLLKLNSR 735
Query: 623 --VLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDD 680
+ +DW + LY + H + +K ++ ++L C++ F T E LG D
Sbjct: 736 STLAMDWDSETRRLYYDEQESEAYEKHVSMLQPQKKKKTTVALRDCIELFTTMETLGEHD 795
Query: 681 MWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYM 740
WYCP CK+H+QATKK DLW LP +LV HLKRFSY+RY ++KLDT V FPI L++S+++
Sbjct: 796 PWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFV 855
Query: 741 KSKDGESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAA 800
+ YVYDL A+SNHYG +G GHYTAYAK +WY+FDDS+VS SE I T AA
Sbjct: 856 CNLSARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAA 915
Query: 801 YVLFYRR 807
YVLFY+R
Sbjct: 916 YVLFYQR 922
>sp|Q5RCD3|UBP4_PONAB Ubiquitin carboxyl-terminal hydrolase 4 OS=Pongo abelii GN=USP4
PE=2 SV=1
Length = 963
Score = 499 bits (1285), Expect = e-140, Method: Compositional matrix adjust.
Identities = 327/847 (38%), Positives = 448/847 (52%), Gaps = 75/847 (8%)
Query: 14 VEIWKKGRTMFWYLSKSGKSFFVGGPALPRKMISEGI-VNEKRVEVFXLCLKLIDSRDNS 72
E W K + WY G+ V RK++ G+ V +VEV+ L LKL ++ D +
Sbjct: 98 TEAWNK--LLNWYGCVEGQQPIV------RKVVEHGLFVKHCKVEVYLLELKLCENSDPT 149
Query: 73 QTVIRLSKKASTRQLYEK-VCKLRGIEQEK-ARIWDYFNKQRSTSPLDVSDQTLDDAMLQ 130
+ KA T EK + KL I E+ AR+W+ + + L D T+ DA L
Sbjct: 150 NVLSCHFSKADTIATIEKEMRKLFNIPAEREARLWNKY-MSNTYEQLSKLDNTVQDAGLY 208
Query: 131 MDQDILLEVQVDNGISMDSTGNDLALVPIEPSRSSLT----------IAGGPALSNGHTT 180
+ Q +++E Q ++G T + PSR+ T ++NG +T
Sbjct: 209 LGQVLVIEPQNEDGTWPRQTLQSKS--STAPSRNFTTSPKSSASPYSSVSDSLIANGDST 266
Query: 181 GYRFNQYPGSSFGSTFMDMDDGYDSYNTAKKGE---KGGLAGLQNLGNTCFMNSALQCLV 237
G SYN + + GL GL NLGNTCFMNSALQCL
Sbjct: 267 ST-----CGMHSSGVSRGGSGFSASYNCQEPPSSHIQPGLCGLGNLGNTCFMNSALQCLS 321
Query: 238 HTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLAR 296
+T L YFL D Y EIN +NPLGM GE+A A+ +L++++WS A VAPR FK ++ R
Sbjct: 322 NTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFKTQVGR 381
Query: 297 FAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKA 356
FAPQFSGY Q DSQELLAFLLDGLHEDLNRVK+KPY+E+KD+ GRPD VA E W+NH+
Sbjct: 382 FAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDVVVAKEAWENHRL 441
Query: 357 RNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGL 416
RNDS+IVD F G +KSTLVCP C+KVS+TFDPF YLTLPLP R M V + A+
Sbjct: 442 RNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEVFLVPADPHCR 501
Query: 417 PMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDD 476
P + VT+ G DL ALS + E +++A+VYNH+ + F+ L + D
Sbjct: 502 PTQYRVTVPLMGAVSDLCEALSRLSGIAA-ENMVVADVYNHRFHKIFQMDEGLNHIMPRD 560
Query: 477 EHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADID 536
+ V G + + ++E+ + S L+G PL+ + + L+ +
Sbjct: 561 DIFVYEVCSTSVDGSECVTLPVYFRERKSRPSSTSSASALYGQPLLLSVPKHKLTLESLY 620
Query: 537 IAVSKLLS-----PLRRTYSSAKAHGGKENGF---------------------LPEV--- 567
AV +S PL + S+ G NG L E
Sbjct: 621 QAVCDRISRYVKQPLPDEFGSSPLEPGACNGSRNSCEGEDEEEMEHQEEGKEQLSETEGS 680
Query: 568 -IDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSILKPGKHIK---- 622
DE + +E+ + C + L F SL ++S +S+ GK +K
Sbjct: 681 GEDEPGSDPSETTQKKIKGQPCPKRL-FTFSL----VNSYGTADINSLAADGKLLKLNSR 735
Query: 623 --VLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDD 680
+ +DW + LY + H + +K ++ ++L C++ F T E LG D
Sbjct: 736 STLAMDWDSETRSLYYDEQESEAYEKHVSMLQPQKKKKTTVALRDCIELFTTMETLGEHD 795
Query: 681 MWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYM 740
WYCP CK+H+QATKK DLW LP +LV HLKRFSY+RY ++KLDT V FPI L++S+++
Sbjct: 796 PWYCPNCKKHQQATKKSDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFV 855
Query: 741 KSKDGESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAA 800
+ YVYDL A+SNHYG +G GHYTAYAK +WY+FDDS+VS SE I T AA
Sbjct: 856 CNLSARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAA 915
Query: 801 YVLFYRR 807
YVLFY+R
Sbjct: 916 YVLFYQR 922
>sp|Q2HJE4|UBP15_BOVIN Ubiquitin carboxyl-terminal hydrolase 15 OS=Bos taurus GN=USP15
PE=2 SV=1
Length = 952
Score = 499 bits (1284), Expect = e-140, Method: Compositional matrix adjust.
Identities = 318/854 (37%), Positives = 459/854 (53%), Gaps = 104/854 (12%)
Query: 14 VEIWKKGRTMFWYLSKSGKSFFVGGPALPRKMISEGI-VNEKRVEVFXLCLKLIDSRDNS 72
E W K + WY + G + RK++ +G+ V +VEV+ LKL ++ + +
Sbjct: 94 TEGWNK--LVSWY------TLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKLCENGNMN 145
Query: 73 QTVIRLSKKASTRQLYEK-VCKLRGIEQEK-ARIWDYFNKQRSTSPLDVSDQTLDDAMLQ 130
V R KA T EK + K+ I EK R+W+ + + PL+ D T+ DA L
Sbjct: 146 NVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKY-MSNTFEPLNKPDSTIQDAGLY 204
Query: 131 MDQDILLEVQVDNGISMDSTGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGS 190
Q +++E + ++G T GP+ N + Y Y
Sbjct: 205 QGQVLVIEQKNEDG----------------------TWPRGPSTPNVKNSNYCLPSYTAY 242
Query: 191 SFGSTFMDMDDGYDSYNTAKKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD- 249
YD + E+ GL GL NLGNTCFMNSA QCL +TP L +YFL D
Sbjct: 243 K----------NYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAFQCLSNTPPLTEYFLNDK 292
Query: 250 YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDS 309
Y +E+N +NPLGM GE+A ++ +L++++WS + V PRAFK ++ RFAPQFSGY Q D
Sbjct: 293 YQEELNFDNPLGMRGEIAKSYAELIKQMWSGKYSYVTPRAFKTQVGRFAPQFSGYQQQDC 352
Query: 310 QELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQ 369
QELLAFLLDGLHEDLNR+++KPYI++KD+ GRPD+ VA E W+NH RNDS+IVD+F G
Sbjct: 353 QELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGL 412
Query: 370 YKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGC 429
+KSTLVCP C+K+S+TFDPF YLTLPLP RT+ V + + PM + V + K G
Sbjct: 413 FKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTKPMQYKVVVPKIGN 472
Query: 430 CKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSI-KDDEHIVAYRFDRKQ 488
DL ALS + D+ +++ ++YNH+ R F L S + +DD ++ +R +
Sbjct: 473 ILDLCTALSLLSGVPADK-MIVTDIYNHRFHRIFAMDENLSSIMERDDIYVFEININRTE 531
Query: 489 GGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADIDIAVSKLLSPLRR 548
+ + V ++ S Y + LFG P + + + ++ + ++ ++
Sbjct: 532 DTEHVIIPVCLREKFRHSSYTHHTGSSLFGQPFLMAVPRNNTEDKLYNLLLVRMCRYVKI 591
Query: 549 TYSSAKAHGGKE-------NGFLPEVID--------ELSNSHNESVETAEL--------- 584
+ + G NG P I E +ES + EL
Sbjct: 592 STDTEDTEGSLHCCKDQNINGNGPNGIHEEGSPSEMETDEPDDESSQDQELPSENENSQS 651
Query: 585 ED-----------LCSRE-------------LSFQL-SLTDERISSCKPIQK-----DSI 614
ED LC+ E +FQ +L + I+ K + D
Sbjct: 652 EDSVGGDNDSENGLCTEETCRGQLTGHKKRLFTFQFNNLGNTDINYIKDDTRHIRFDDRQ 711
Query: 615 LKPGKHIKVLLDWTDDVHELY-DPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTE 673
L+ + + LDW D+ + Y D + +D + K ++ + L C++ F T+
Sbjct: 712 LRLDERSFLALDWDPDLKKRYFDENAAEDFEKHESVEY--KPPKKPFVKLKDCIELFTTK 769
Query: 674 EPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILN 733
E LG +D WYCP CKEH+QATKKLDLW LP VLV HLKRFSYSRY+++KLDT V+FPI +
Sbjct: 770 EKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPIND 829
Query: 734 LDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEG 793
LD+S+++ + + Y+L A+SNHYGG+GGGHYTA+AK D+ +WY+FDDS VS SE
Sbjct: 830 LDMSEFLINPNAGPCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASED 889
Query: 794 DIKTSAAYVLFYRR 807
I + AAYVLFY+R
Sbjct: 890 QIVSKAAYVLFYQR 903
>sp|A6QR55|UBP4_BOVIN Ubiquitin carboxyl-terminal hydrolase 4 OS=Bos taurus GN=USP4 PE=2
SV=1
Length = 963
Score = 497 bits (1279), Expect = e-139, Method: Compositional matrix adjust.
Identities = 322/847 (38%), Positives = 442/847 (52%), Gaps = 75/847 (8%)
Query: 14 VEIWKKGRTMFWYLSKSGKSFFVGGPALPRKMISEGI-VNEKRVEVFXLCLKLIDSRDNS 72
E W K + WY G+ V RK++ G+ V +VEV+ L LKL ++ D +
Sbjct: 98 AEAWNK--LLNWYGCVEGQQPIV------RKVVEHGLFVKHCKVEVYLLELKLCENSDPT 149
Query: 73 QTVIRLSKKASTRQLYEK-VCKLRGIEQEK-ARIWDYFNKQRSTSPLDVSDQTLDDAMLQ 130
+ KA T EK + KL I E+ R+W+ + + L D T+ DA L
Sbjct: 150 NVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKY-MSNTYEQLSKLDNTVQDAGLY 208
Query: 131 MDQDILLEVQVDNGISMDSTGNDLALVPIEPSRSSLT----------IAGGPALSNGHTT 180
Q +++E Q ++G T + PSR+ T ++NG +T
Sbjct: 209 QGQVLVIEPQNEDGTWPRQTQQSKS--STAPSRNFTTSPKSSASPYSSVSASPIANGDST 266
Query: 181 GYRFNQYPGSSFGSTFMDMDDGYDSYNTAKKG---EKGGLAGLQNLGNTCFMNSALQCLV 237
G SYN + + GL GL NLGNTCFMNSALQCL
Sbjct: 267 NTS-----GMHSSGVSRGGSGFSASYNCQESPLTHVQPGLCGLGNLGNTCFMNSALQCLS 321
Query: 238 HTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLAR 296
+T L YFL D Y EIN +NPLGM GE+A A+ +L++++WS A VAPR FK ++ R
Sbjct: 322 NTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFKTQVGR 381
Query: 297 FAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKA 356
FAPQFSGY Q DSQELLAFLLDGLHEDLNRVK+KPY+E+KD+ GRPD VA E W+NH+
Sbjct: 382 FAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRL 441
Query: 357 RNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGL 416
RNDS+IVD F G +KSTLVCP C+KVS+TFDPF YLTLPLP R M + + A+
Sbjct: 442 RNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEIFLVPADPRCR 501
Query: 417 PMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDD 476
P + V + G DL ALS + E +++ +VYNH+ + F+ L + D
Sbjct: 502 PTQYRVVVPLMGAVSDLCEALSKLSGIAA-ENMVVTDVYNHRFHKIFQMDEGLNHIMPRD 560
Query: 477 EHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADID 536
+ V G + + ++E+ + + L+G PL+ + + L+ +
Sbjct: 561 DIFVYEVCSTSPDGSECVTLPVYFRERKSRPSSTSTGAVLYGQPLLVSVPKHKLTLESLY 620
Query: 537 IAVSKLLS-----PLRRTYSSAKAHGGKENGF---------------------LPEVI-- 568
AV + +S PL S+ G NG L E
Sbjct: 621 QAVCERISRYIKQPLPDESGSSPLELGACNGSRSGCAGEDEEEMEHQEEGREQLSETEGS 680
Query: 569 --DELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSILKPGKHIK---- 622
DE + H E+ + C R L F SL ++S +S+ GK +K
Sbjct: 681 GDDEPGSDHGEATQKKNKGRPCPRRL-FTFSL----VNSYGTADINSLATDGKLLKLNSR 735
Query: 623 --VLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDD 680
+ +DW + Y + H + +K ++ A++L C++ F T E LG D
Sbjct: 736 STLAIDWDSETRSCYYNEQESETYEKHVSMLQPQKKKKTAVALRDCIELFTTMETLGEHD 795
Query: 681 MWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYM 740
WYCP CK+H+QATKK DLW LP +LV HLKRFSY+RY ++KLDT V FP+ L++S+++
Sbjct: 796 PWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPVRGLNMSEFV 855
Query: 741 KSKDGESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAA 800
YVYDL A+SNHYG +G GHYTAYAK +WY+FDDS+VS E I T AA
Sbjct: 856 CDPSARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLACEDQIVTKAA 915
Query: 801 YVLFYRR 807
YVLFY+R
Sbjct: 916 YVLFYQR 922
>sp|Q9Y4E8|UBP15_HUMAN Ubiquitin carboxyl-terminal hydrolase 15 OS=Homo sapiens GN=USP15
PE=1 SV=3
Length = 981
Score = 495 bits (1274), Expect = e-139, Method: Compositional matrix adjust.
Identities = 321/858 (37%), Positives = 474/858 (55%), Gaps = 83/858 (9%)
Query: 14 VEIWKKGRTMFWYLSKSGKSFFVGGPALPRKMISEGI-VNEKRVEVFXLCLKLIDSRDNS 72
E W K + WY + G + RK++ +G+ V +VEV+ LKL ++ + +
Sbjct: 94 TEGWNK--LVSWY------TLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKLCENGNMN 145
Query: 73 QTVIRLSKKASTRQLYEK-VCKLRGIEQEK-ARIWDYFNKQRSTSPLDVSDQTLDDAMLQ 130
V R KA T EK + K+ I EK R+W+ + + PL+ D T+ DA L
Sbjct: 146 NVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKY-MSNTFEPLNKPDSTIQDAGLY 204
Query: 131 MDQDILLEVQVDNGISMDSTGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGS 190
Q +++E + ++G T P P S+ + P +S + N +
Sbjct: 205 QGQVLVIEQKNEDG-----TWPRGPSTPKSPGASNFSTL--PKISPSSLSNNYNNMNNRN 257
Query: 191 SFGSTF-MDMDDGYDSYNTAKKG---EKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYF 246
S + + Y +Y+ ++ G E+ GL GL NLGNTCFMNSA+QCL +TP L +YF
Sbjct: 258 VKNSNYCLPSYTAYKNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYF 317
Query: 247 LGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYN 305
L D Y +E+N +NPLGM GE+A ++ +L++++WS + V PRAFK ++ RFAPQFSGY
Sbjct: 318 LNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQ 377
Query: 306 QHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDV 365
Q D QELLAFLLDGLHEDLNR+++KPYI++KD+ GRPD+ VA E W+NH RNDS+IVD+
Sbjct: 378 QQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDI 437
Query: 366 FQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLM 425
F G +KSTLVCP C+K+S+TFDPF YLTLPLP RT+ V + + PM + V +
Sbjct: 438 FHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTKPMQYKVVVP 497
Query: 426 KHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSI-KDDEHIVAYRF 484
K G DL ALS + D+ +++ ++YNH+ R F L S + +DD ++
Sbjct: 498 KIGNILDLCTALSALSGIPADK-MIVTDIYNHRFHRIFAMDENLSSIMERDDIYVFEINI 556
Query: 485 DRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADIDIAVSKLLS 544
+R + + + V ++ S Y + LFG P + + + ++ + ++
Sbjct: 557 NRTEDTEHVIIPVCLREKFRHSSYTHHTGSSLFGQPFLMAVPRNNTEDKLYNLLLLRMCR 616
Query: 545 PLRRTYSSAKAHGGKE-------NGFLPEVI---------------DELSN-----SHNE 577
++ + + + G NG P I DE S S NE
Sbjct: 617 YVKISTETEETEGSLHCCKDQNINGNGPNGIHEEGSPSEMETDEPDDESSQDQELPSENE 676
Query: 578 SVETAE-------------LEDLCSREL--------SFQL-SLTDERISSCKPIQK---- 611
+ ++ + ED C +L +FQ +L + I+ K +
Sbjct: 677 NSQSEDSVGGDNDSENGLCTEDTCKGQLTGHKKRLFTFQFNNLGNTDINYIKDDTRHIRF 736
Query: 612 -DSILKPGKHIKVLLDWTDDVHELY-DPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDA 669
D L+ + + LDW D+ + Y D + +D + K ++ + L C++
Sbjct: 737 DDRQLRLDERSFLALDWDPDLKKRYFDENAAEDFEKHESVEY--KPPKKPFVKLKDCIEL 794
Query: 670 FLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNF 729
F T+E LG +D WYCP CKEH+QATKKLDLW LP VLV HLKRFSYSRY+++KLDT V+F
Sbjct: 795 FTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDF 854
Query: 730 PILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSP 789
PI +LD+S+++ + + Y+L A+SNHYGG+GGGHYTA+AK D+ +WY+FDDS VS
Sbjct: 855 PINDLDMSEFLINPNAGPCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVST 914
Query: 790 VSEGDIKTSAAYVLFYRR 807
SE I + AAYVLFY+R
Sbjct: 915 ASEDQIVSKAAYVLFYQR 932
>sp|F6Z5C0|UBP15_XENTR Ubiquitin carboxyl-terminal hydrolase 15 OS=Xenopus tropicalis
GN=usp15 PE=2 SV=2
Length = 982
Score = 494 bits (1273), Expect = e-139, Method: Compositional matrix adjust.
Identities = 318/845 (37%), Positives = 468/845 (55%), Gaps = 93/845 (11%)
Query: 41 LPRKMISEGI-VNEKRVEVFXLCLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGI-- 97
+ RK++ +G+ V +VEV+ LKL ++ + + V R KA T + EK ++R I
Sbjct: 113 IARKVVEQGMFVKHCKVEVYLTELKLCENGNMNNVVTRRFSKADTIDMIEK--EMRTIFS 170
Query: 98 --EQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDNGISMDSTGNDLA 155
++++ R+W+ + + PL+ + T+ DA L Q +++E + G + +
Sbjct: 171 IPDEKETRLWNKY-MSNTFEPLNKPESTIQDAGLYQGQMLVIEQKNQEGQWPRGSMPKSS 229
Query: 156 LVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGSTFMDMDD-------GYDSYNT 208
+P + S+L +LSN + ++F S M + Y +Y
Sbjct: 230 GIP---NFSTLPKISPSSLSNNY-----------NNFNSRIMKNSNYCLPSYAAYKNYEY 275
Query: 209 AKKG---EKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHG 264
++ G E+ GL GL NLGNTCFMNSA+QCL +TP L +YFL D Y DE+N +NPLGM G
Sbjct: 276 SEPGRHNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQDELNMDNPLGMRG 335
Query: 265 ELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDL 324
E+A ++ +L++++WS + V PRAFK ++ RFAPQFSGY Q D QELLAFLLDGLHEDL
Sbjct: 336 EIAKSYAELIKQMWSGKYSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDL 395
Query: 325 NRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSI 384
NR+++KPYI++KD+ GRPD+ VA E W+NH RNDS+IVD+F G +KSTLVCP CSK+S+
Sbjct: 396 NRIRKKPYIQLKDADGRPDKVVAEEAWENHIKRNDSIIVDIFHGLFKSTLVCPECSKISV 455
Query: 385 TFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLK 444
TFDPF YLTLPLP R + V + + PM + V + K G DL ALS+ +
Sbjct: 456 TFDPFCYLTLPLPMKKERALEVYLVRMDPLAKPMQYKVIVPKIGNIMDLCTALSSLSGI- 514
Query: 445 IDEGLLLAEVYNHQIFRFFENPAELISSI-KDDEHIVAYRFDRKQGGKIKLEIVNRWQEK 503
E +++ ++YNH+ R F L S + +DD ++ +R + + + V ++
Sbjct: 515 APEKMVVTDIYNHRFHRIFAMDENLSSIMERDDIYVFETSINRTEDTEQVIIPVYLREKF 574
Query: 504 SASDYLKGSERKLFGAPLVTYLEEEHLSGADIDIAVSKLLSPLRRTYSSAKA----HGGK 559
+ Y LFG P + + ++ + ++ ++ T + + H K
Sbjct: 575 RHTSYSHHHGSTLFGQPFLITVPRNITEDKLYNLLLLRMCRYVKATNDTEENDGSLHCNK 634
Query: 560 E---NGFLPEVI---------------DELSN-----SHNESVETAE------------- 583
E NG P I DE S S NE+ ++ +
Sbjct: 635 EHTVNGNGPNGIHEEGSPSEMETDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLC 694
Query: 584 LEDLC---------SRELSFQLS-LTDERISSCKPIQK-----DSILKPGKHIKVLLDWT 628
ED C R +FQ S L I+ K K + L+ + + LDW
Sbjct: 695 TEDTCKGQSVTGQKKRLFTFQFSNLGSSDITYIKDDTKYIRFDERQLRLDERSYLALDWD 754
Query: 629 DDV-HELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQC 687
+ + +D + +D FT +K + + L C++ F T+E LG +D WYCP C
Sbjct: 755 PKLKKKFFDENAAEDFEKHESVDFTPQK--KAFMKLKDCIELFTTKEKLGAEDPWYCPNC 812
Query: 688 KEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGES 747
KEH+QATKKLDLW LP VLV HLKRFSYSRY+++KLDT V+FPI +LD+S ++ + +
Sbjct: 813 KEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPISDLDMSTFLINPNAGP 872
Query: 748 YVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRR 807
Y+L A+SNHYGG+GGGHYTA+AK D+ +WY+FDDS VS SE I + AAYVLFY+R
Sbjct: 873 CCYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEEQIVSKAAYVLFYQR 932
Query: 808 VKSKT 812
+ T
Sbjct: 933 QDTIT 937
>sp|Q8R5H1|UBP15_MOUSE Ubiquitin carboxyl-terminal hydrolase 15 OS=Mus musculus GN=Usp15
PE=2 SV=1
Length = 981
Score = 493 bits (1268), Expect = e-138, Method: Compositional matrix adjust.
Identities = 323/859 (37%), Positives = 472/859 (54%), Gaps = 85/859 (9%)
Query: 14 VEIWKKGRTMFWYLSKSGKSFFVGGPALPRKMISEGI-VNEKRVEVFXLCLKLIDSRDNS 72
E W K + WY + G + RK++ +G+ V +VEV+ LKL ++ + +
Sbjct: 94 TEGWNK--LVSWY------TLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKLCENGNMN 145
Query: 73 QTVIRLSKKASTRQLYEK-VCKLRGIEQEK-ARIWDYFNKQRSTSPLDVSDQTLDDAMLQ 130
V R KA T EK + K+ I EK AR+W+ + + PL+ D T+ DA L
Sbjct: 146 NVVTRRFSKADTIDTIEKEIRKIFNIPDEKEARLWNKY-MSNTFEPLNKPDSTIQDAGLY 204
Query: 131 MDQDILLEVQVDNGISMDSTGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGS 190
Q +++E + ++G T P P S+ + P +S + N +
Sbjct: 205 QGQVLVIEQKNEDG-----TWPRGPSTPKSPGASNFSTL--PKISPSSLSNNYNNINNRN 257
Query: 191 SFGSTF-MDMDDGYDSYNTAKKG---EKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYF 246
S + + Y +Y+ ++ G E+ GL GL NLGNTCFMNSA+QCL +TP L +YF
Sbjct: 258 VKNSNYCLPSYTAYKNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYF 317
Query: 247 LGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYN 305
L D Y +E+N +NPLGM GE+A ++ +L++++WS + V PRAFK ++ RFAPQFSGY
Sbjct: 318 LNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQ 377
Query: 306 QHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDV 365
Q D QELLAFLLDGLHEDLNR+++KPYI++KD+ GRPD+ VA E W+NH RNDS+IVD+
Sbjct: 378 QQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDI 437
Query: 366 FQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLM 425
F G +KSTLVCP C+K+S+TFDPF YLTLPLP R++ V + + PM + V +
Sbjct: 438 FHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERSLEVYLVRMDPLAKPMQYKVIVP 497
Query: 426 KHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSI--KDDEHIVAYR 483
K G DL ALS + D+ +++ ++YNH+ R F E +SSI +DD ++
Sbjct: 498 KIGNILDLCTALSALSGVPADK-MIVTDIYNHRFHRIFA-VDENLSSIMERDDIYVFEIN 555
Query: 484 FDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADIDIAVSKLL 543
+R + + + V ++ S Y + LFG P + + + ++ + ++
Sbjct: 556 INRAEDTEHVVIPVCLREKFRHSSYTHHTGSSLFGQPFLMAIPRNNTEDKLYNLLLLRMC 615
Query: 544 SPLR------------RTYSSAKAHGGKENGFLPEVID---ELSNSHNESVETAEL---- 584
++ R +G NG E E +ES + EL
Sbjct: 616 RYVKMSTETEETDGHLRCCEDQNINGNGPNGLHEEGSPSEMETDEPDDESSQDQELPSEN 675
Query: 585 -----ED-----------LCSRE-------------LSFQL-SLTDERISSCKPIQK--- 611
ED LC+ E +FQ +L + I+ K
Sbjct: 676 ENSQSEDSVGGDNDSENGLCTEETCKGQLTGHKKRLFTFQFNNLGNNDINYIKDDTSHIR 735
Query: 612 --DSILKPGKHIKVLLDWTDDVHELY-DPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLD 668
D L+ + + LDW D+ + Y D + +D + K ++ + L C++
Sbjct: 736 FDDRQLRLDERSFLALDWDPDLKKRYFDENAAEDFEKHESVEY--KPPKRPFVKLKDCIE 793
Query: 669 AFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVN 728
F T+E LG +D WYCP CKEH+QATKKLDLW LP VLV HLKRFSYSRY+++KLDT V+
Sbjct: 794 LFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVD 853
Query: 729 FPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVS 788
FPI +LD+S+++ + + Y+L A+SNHYGG+GGGHYTA+AK D+ +WY+FDDS VS
Sbjct: 854 FPISDLDMSEFLINPNAGPCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVS 913
Query: 789 PVSEGDIKTSAAYVLFYRR 807
SE I + AAYVLFY+R
Sbjct: 914 TASEDQIVSKAAYVLFYQR 932
>sp|P51784|UBP11_HUMAN Ubiquitin carboxyl-terminal hydrolase 11 OS=Homo sapiens GN=USP11
PE=1 SV=3
Length = 963
Score = 440 bits (1132), Expect = e-122, Method: Compositional matrix adjust.
Identities = 284/824 (34%), Positives = 427/824 (51%), Gaps = 98/824 (11%)
Query: 25 WYLSKSGKSFFVGGPALPRKMISEGIVNEKRVEVFXLCLKLIDSRDNSQTVIRLSKKAST 84
W+ S G P + RK+I + N ++VEV+ + L L+ D ++ +
Sbjct: 163 WHYLVSWYGLEHGQPPIERKVIE--LPNIQKVEVYPVELLLVRHNDLGKSHTVQFSHTDS 220
Query: 85 RQLYEKVCKLRGI--EQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVD 142
L + + R + QE R+W N + S L + T+ DA L+ Q I++E +
Sbjct: 221 IGLVLRTARERFLVEPQEDTRLWAK-NSEGSLDRLYDTHITVLDAALETGQLIIMETRKK 279
Query: 143 NGISMDSTGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGSTFMDMDDG 202
+G +P + +M +
Sbjct: 280 DGT-----------------------------------------WPSAQLHVMNNNMSEE 298
Query: 203 YDSYNTAKKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLG 261
+ + KG+ G + GL NLGNTCFMNSALQCL + P L +YFL + Y +E+N NPLG
Sbjct: 299 DEDF----KGQPG-ICGLTNLGNTCFMNSALQCLSNVPQLTEYFLNNCYLEELNFRNPLG 353
Query: 262 MHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLH 321
M GE+A A+ DL+++ WS ++ P FK K+ FA QF GY QHDSQELL+FLLDGLH
Sbjct: 354 MKGEIAEAYADLVKQAWSGHHRSIVPHVFKNKVGHFASQFLGYQQHDSQELLSFLLDGLH 413
Query: 322 EDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSK 381
EDLNRVK+K Y+E+ D+ GRPD+EVA E W+NHK RNDS+IVD F G +KSTLVCP C
Sbjct: 414 EDLNRVKKKEYVELCDAAGRPDQEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGN 473
Query: 382 VSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTAC 441
VS+TFDPF YL++PLP + R + V + P + + K G DL +ALS
Sbjct: 474 VSVTFDPFCYLSVPLPISHKRVLEVFFIPMDPRRKPEQHRLVVPKKGKISDLCVALSKHT 533
Query: 442 CLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAY----RFDRKQGGKIKLEIV 497
+ E +++A+V++H+ ++ ++ E +SSI D + I Y R + +G + + +
Sbjct: 534 GIS-PERMMVADVFSHRFYKLYQL-EEPLSSILDRDDIFVYEVSGRIEAIEGSREDIVVP 591
Query: 498 NRWQEKS-ASDYLKG-SERKLFGAPLVTYLEEEHLSGADI-DIAVSKLLSPLRRTYS--- 551
+E++ A DY LFG PL+ + + + + ++ + +L + + S
Sbjct: 592 VYLRERTPARDYNNSYYGLMLFGHPLLVSVPRDRFTWEGLYNVLMYRLSRYVTKPNSDDE 651
Query: 552 ----------------SAKAHGGKENGFLPEVIDELSNSHNE-------SVETAELEDLC 588
+ GG PE S N + T++
Sbjct: 652 DDGDEKEDDEEDKDDVPGPSTGGSLRDPEPEQAGPSSGVTNRCPFLLDNCLGTSQWPPRR 711
Query: 589 SRELSFQLSLTDERISSCKPIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHK 648
R+ F L + +S + + + + +DW ++ + Y + V H
Sbjct: 712 RRKQLFTLQTVNSNGTSDRTTSPEEV---HAQPYIAIDWEPEMKKRYYDEVEAEGYVKHD 768
Query: 649 -TGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLV 707
G+ +KK + L C++ F T E L ++ WYCP CK+H+ ATKKLDLWMLP++L+
Sbjct: 769 CVGYVMKKA---PVRLQECIELFTTVETLEKENPWYCPSCKQHQLATKKLDLWMLPEILI 825
Query: 708 FHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGES----YVYDLFAISNHYGGLG 763
HLKRFSY+++ + KLDT V FPI +LD S+++ ES Y YDL A+SNHYGG+
Sbjct: 826 IHLKRFSYTKFSREKLDTLVEFPIRDLDFSEFVIQPQNESNPELYKYDLIAVSNHYGGMR 885
Query: 764 GGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRR 807
GHYT +A D +W++FDD+ VSPV+E I++ AAYVLFY+R
Sbjct: 886 DGHYTTFACNKDSGQWHYFDDNSVSPVNENQIESKAAYVLFYQR 929
>sp|Q9USM5|UBP1_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ubp1 PE=3 SV=1
Length = 849
Score = 317 bits (812), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 215/629 (34%), Positives = 314/629 (49%), Gaps = 97/629 (15%)
Query: 216 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLL 274
GL GL NLGN+C+MNSALQC++HT +L +YFL D Y +IN NPLGM G++AL++ LL
Sbjct: 277 GLCGLYNLGNSCYMNSALQCMIHTHELTKYFLSDSYEKDINYNNPLGMMGKVALSYASLL 336
Query: 275 RKLW-SSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYI 333
+ + ++ +V+P +FK + F FSGY Q DSQE +AF LDGLHEDLNR++ KPY
Sbjct: 337 KMIHHTADMHSVSPSSFKFIIGEFNTYFSGYRQQDSQEFIAFFLDGLHEDLNRIQIKPYF 396
Query: 334 EMKDSGGRPD---------EEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSI 384
E RPD + VAN+CW H RNDS+IV +FQG YKSTL C +C + S
Sbjct: 397 E------RPDLFDEHPLHVQRVANQCWDIHTKRNDSIIVQLFQGMYKSTLECSICYQKST 450
Query: 385 TFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDL-ILALSTACCL 443
FDPFMYLTLPLP++ V G+ P+ + L+ + A +
Sbjct: 451 AFDPFMYLTLPLPTSAKWRHKVVYVPPFGTQSPVELYLELLMESTVIQMKFQATEKLQKM 510
Query: 444 KIDEGLLLA-EVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVN---- 498
++ G L A ++Y ++++ +N ++ I +H+V Y + + IV+
Sbjct: 511 GLECGELTACDIYRGKVYKVLKNKDKISKKIHKWDHVVLY---GSTANGLTIPIVHGCKR 567
Query: 499 -----RWQEKSASDY---LKGSERKLFGAPLVTYLEEEHLSGADIDIAVSKLLSPLRRTY 550
+Q + L R + LV + E + A ID+A+ L L+R
Sbjct: 568 PAMPGSYQSNDVFGFPLQLNVRSRNVLTNDLVKEIVELYRVYAGIDVAIGTLQLGLKRME 627
Query: 551 SSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQ 610
S A GK E ++ E++ E ++ + D+ + C
Sbjct: 628 SKA----GKW----------------ECIKEIEVKRFEIVEEE-EIVIDDKTVIMCL--- 663
Query: 611 KDSILKPGKHIKVLLDWTDDVHE--LYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLD 668
W D +E Y+ +I F + E+I+L CL
Sbjct: 664 ----------------WNDQQYEKLFYNCEWI----------FEKIQFHMESITLEDCLL 697
Query: 669 AFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFS---YSRYLKNKLDT 725
F E L D WYCP CK R ATK+L++W LP +LV HL RFS + K
Sbjct: 698 EFSKPEQLDLQDSWYCPGCKAFRPATKRLEIWRLPKILVIHLNRFSGHGGDLRRRRKRRD 757
Query: 726 FVNFPILNLDLSKYMKS--KDGE------SYVYDLFAISNHYGGLGGGHYTAYAKLIDEN 777
V +P+ +L+L +++ KD E S +YDL+A+ NH+G + GHYTAYA+
Sbjct: 758 LVVYPVFDLNLKQFLSPFIKDHEWLSSQKSMLYDLYAVDNHHGFMSNGHYTAYARDASSQ 817
Query: 778 RWYHFDDSHVSPVSEGDIKTSAAYVLFYR 806
++ FDD+ + + DI TS+AYVLFYR
Sbjct: 818 TFFKFDDTAICEIDPEDIVTSSAYVLFYR 846
>sp|Q99K46|UBP11_MOUSE Ubiquitin carboxyl-terminal hydrolase 11 OS=Mus musculus GN=Usp11
PE=2 SV=4
Length = 921
Score = 289 bits (740), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 191/519 (36%), Positives = 271/519 (52%), Gaps = 67/519 (12%)
Query: 25 WYLSKSGKSFFVGGPALPRKMIS-EGIVNEKRVEVFXLCLKLIDSRD-NSQTVIRLSKKA 82
W S G P + RK+I GI ++VEV+ L L L+ D + I+ S
Sbjct: 112 WNYMVSWYGLMDGQPPIERKVIELPGI---RKVEVYPLELLLVQHSDMETALTIQFSYTD 168
Query: 83 STRQLYEKVCKLRGIE-QEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 141
S + + + +E QE R+W N + S L + TL DA L+ Q +++E +
Sbjct: 169 SVELVLQTAREQFLVEPQEDTRLWTK-NSEGSLDRLCNTQITLLDACLETGQLVIMETRN 227
Query: 142 DNGISMDSTGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGSTFMDMDD 201
+G + S + G N P D D+
Sbjct: 228 KDG-----------------TWPSAQLCG-------------MNNIP---------DEDE 248
Query: 202 GYDSYNTAKKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPL 260
+ + G+ GL NLGNTCFMNSALQCL + P L +YFL + Y +E+N NPL
Sbjct: 249 DFQG--------QPGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLNNRYLEELNFRNPL 300
Query: 261 GMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGL 320
GM GELA A+ DL+++ WS ++ P FK K+ FA QF GY QHDSQELL+FLLDGL
Sbjct: 301 GMKGELAEAYADLVKQTWSGYHRSIVPNVFKNKVGHFASQFLGYQQHDSQELLSFLLDGL 360
Query: 321 HEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCS 380
HEDLNRVK+K Y+E+ + GRPD EVA E W+NHK RNDS+IVD F G +KSTLVCP C
Sbjct: 361 HEDLNRVKKKEYVELCNGAGRPDLEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCG 420
Query: 381 KVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTA 440
VS+TFDPF YL++PLP R + V + P V + K G DL +ALST
Sbjct: 421 NVSVTFDPFCYLSVPLPVCSRRVLEVFFVPMDPRRKPEQHRVVVPKKGNISDLCVALSTH 480
Query: 441 CCLKIDEGLLLAEVYNHQIFRFF--ENPAELISSIKDDEHIVAY----RFDRKQGGKIKL 494
+ D+ +++A+V++H+ ++ + E+P +S I D + I Y R + +G + +
Sbjct: 481 TSVAPDK-MIVADVFSHRFYKLYQLEDP---LSGILDRDDIFVYEVTGRIEPVEGSRDDI 536
Query: 495 EIVNRWQEKSASDYLKGSERK--LFGAPLVTYLEEEHLS 531
+ +E++ S S LFG PL+ + + S
Sbjct: 537 VVPVYLRERTPSRDYNNSYYGLILFGHPLLVSVPRDRFS 575
Score = 177 bits (450), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/190 (46%), Positives = 122/190 (64%), Gaps = 8/190 (4%)
Query: 623 VLLDWTDDVHELYDPSYIKDLPVVHK-TGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDM 681
+ +DW D+ Y + V H G+ +KK+ + L C+ F T E L ++
Sbjct: 702 IAMDWEPDMKRRYYDEVEAEGYVKHDCVGYMLKKS---PVQLKECIKLFTTVETLEKENP 758
Query: 682 WYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMK 741
WYC CK+H+ ATKKLDLWMLP+VL+ HLKRFS+S+ + KLDT V FPI +LD S+++
Sbjct: 759 WYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKISREKLDTLVQFPIRDLDFSEFVI 818
Query: 742 SKDGES----YVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKT 797
ES Y YDL A+SNHYGG+ GHYT +A D +W++FDD+ VSPV+E I++
Sbjct: 819 KPKNESSPDLYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVSPVNENQIES 878
Query: 798 SAAYVLFYRR 807
AAYVLFY+R
Sbjct: 879 KAAYVLFYQR 888
>sp|O60079|UBP12_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 12
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ubp12 PE=1 SV=1
Length = 979
Score = 257 bits (657), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 180/522 (34%), Positives = 261/522 (50%), Gaps = 53/522 (10%)
Query: 36 VGGPALPRKMISEG------IVNEKRVEVFXLCLKLIDSRDNSQT----VIRLSKKASTR 85
+ GP PR+ ++ G +V E +F L L ++ D +++ I LS K++
Sbjct: 142 LKGPEFPRETVNLGSESHPHLVVEVYPPIFSLTLLSTNAVDANESHKPKKISLSSKSTLE 201
Query: 86 QLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQ----DILLEVQV 141
L E V + ++ R+W Q +D S + ++++ D L + +
Sbjct: 202 DLLEGVKYTLSLPSDQFRLWRVDTDQPLHRTIDPS------SFIKINSKEIIDFLEKSKT 255
Query: 142 DNGISMDSTGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGSTFMDMDD 201
+ MDS+ + +A I + T AL R NQ
Sbjct: 256 LVELGMDSSCSLVAECMI-----NETWPVDRALRLQFLIQQRNNQ--------------- 295
Query: 202 GYDSYNTAKKGEK--GGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTEN 258
S N +K EK G GL NLGNTC+MNSALQCL HT +L +F D + +++N N
Sbjct: 296 ---SSNEEQKQEKRVPGTCGLSNLGNTCYMNSALQCLTHTRELRDFFTSDEWKNQVNESN 352
Query: 259 PLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLD 318
PLGM G++A F L++ L+S ++ APR FK + +F F GY Q DSQE LAFLLD
Sbjct: 353 PLGMGGQVASIFASLIKSLYSPEHSSFAPRQFKATIGKFNHSFLGYGQQDSQEFLAFLLD 412
Query: 319 GLHEDLNRVKQKPYIEMKDSGGRPDEEVAN---ECWKNHKARNDSLIVDVFQGQYKSTLV 375
GLHEDLNR+ QKPY D +E++ N ECW+ HK RNDSLIVD+FQG Y+STLV
Sbjct: 413 GLHEDLNRIYQKPYTSKPDLYEVDEEKIKNTAEECWRLHKLRNDSLIVDLFQGMYRSTLV 472
Query: 376 CPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTL-MKHGCCKDLI 434
CPVC+ VSITFDPFM LTLPLP + TVT A+ + P+ V L K +DL+
Sbjct: 473 CPVCNTVSITFDPFMDLTLPLPVKQVWSHTVTFIPADTNLTPLAIEVVLESKAATIEDLV 532
Query: 435 LALSTACCLKIDEGLLLAEVYNHQIFRFFENPAE-LISSIKDDEHIVAYRFDR--KQGGK 491
++ +L+ E Y + +RF ++ L+ I +++ I Y +R + G
Sbjct: 533 KYVAEKSGCSDYRKILVTETYKGRFYRFLTQLSKSLLMEISEEDEIYLYELERPYEDGSD 592
Query: 492 IKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGA 533
L V + S + + FG P V L + ++ A
Sbjct: 593 DILVPVYHISDDSTNSANSYMSSRDFGHPFVLQLSDNEVTDA 634
Score = 160 bits (406), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/182 (48%), Positives = 117/182 (64%), Gaps = 8/182 (4%)
Query: 637 PSYIKDLPVVHKTGFTVKKTRQE---AISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQA 693
P + L + KT + KK E I+L CLD F E LG +D WYCP CKE RQA
Sbjct: 798 PQMGRSLWLESKTILSDKKDDSEDSRTITLNDCLDEFEKTEQLGEEDPWYCPTCKEFRQA 857
Query: 694 TKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKY-----MKSKDGESY 748
+K++++W P++L+FHLKRFS R ++K+D V FPI NLD+S + K+
Sbjct: 858 SKQMEIWRCPEILIFHLKRFSSERRFRDKIDDLVEFPIDNLDMSMRTGSYKLSEKENPKL 917
Query: 749 VYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRV 808
+Y+L+A+ NHYGGLGGGHYTA+AK D ++Y FDDS V+PV + TSAAY+LFYRR
Sbjct: 918 IYELYAVDNHYGGLGGGHYTAFAKNPDNGQFYCFDDSRVTPVCPEETVTSAAYLLFYRRK 977
Query: 809 KS 810
S
Sbjct: 978 TS 979
>sp|O94966|UBP19_HUMAN Ubiquitin carboxyl-terminal hydrolase 19 OS=Homo sapiens GN=USP19
PE=1 SV=2
Length = 1318
Score = 248 bits (634), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 137/294 (46%), Positives = 176/294 (59%), Gaps = 8/294 (2%)
Query: 216 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLG-DYSDEINTENPLGMHGELALAFGDLL 274
G GL NLGNTCFMNS +Q L +T +L +F + EIN NPLG G LA+ F LL
Sbjct: 495 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 554
Query: 275 RKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIE 334
R LW A P K +A A QF+GY QHD+QE +AFLLDGLHEDLNR++ KPY E
Sbjct: 555 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 614
Query: 335 MKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTL 394
DS GRPDE VA E W+ HK RNDS IVD+FQGQYKS LVCPVC+KVSITFDPF+YL +
Sbjct: 615 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 674
Query: 395 PLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLIL-ALSTACCLKIDEGLLLAE 453
PLP + + V F P+ F V++ K +L +LS + +K E L LAE
Sbjct: 675 PLPQK-QKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVK-PENLRLAE 732
Query: 454 VYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGK---IKLEIVNRWQEKS 504
V ++ R F P+ + ++ + ++ + + K + LE+ R Q S
Sbjct: 733 VIKNRFHRVF-LPSHSLDTVSPSDTLLCFELLSSELAKERVVVLEVQQRPQVPS 785
Score = 160 bits (406), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 80/182 (43%), Positives = 113/182 (62%), Gaps = 9/182 (4%)
Query: 641 KDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLW 700
K+L G + R +L CL+ F E L P++ WYCPQCK+HR+A+K+L LW
Sbjct: 1038 KELECAEDPGSAGEAARAGHFTLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLW 1097
Query: 701 MLPDVLVFHLKRFSYSRYL-KNKLDTFVNFPILNLDLSKY-MKSKDGESYVYDLFAISNH 758
LP+VL+ LKRFS+ ++ ++K++ V FP+ NLDLSK+ + K+ + YDL+A+ NH
Sbjct: 1098 RLPNVLIVQLKRFSFRSFIWRDKINDLVEFPVRNLDLSKFCIGQKEEQLPSYDLYAVINH 1157
Query: 759 YGGLGGGHYTAYAKLIDENR-------WYHFDDSHVSPVSEGDIKTSAAYVLFYRRVKSK 811
YGG+ GGHYTA A+L ++ W FDDS V+ V E + T AYVLFYRR S
Sbjct: 1158 YGGMIGGHYTACARLPNDRSSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRRRNSP 1217
Query: 812 TK 813
+
Sbjct: 1218 VE 1219
>sp|Q6J1Y9|UBP19_RAT Ubiquitin carboxyl-terminal hydrolase 19 OS=Rattus norvegicus
GN=Usp19 PE=1 SV=1
Length = 1357
Score = 248 bits (634), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 129/250 (51%), Positives = 158/250 (63%), Gaps = 4/250 (1%)
Query: 216 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLG-DYSDEINTENPLGMHGELALAFGDLL 274
G GL NLGNTCFMNS +Q L +T +L +F + EIN NPLG G LA+ F LL
Sbjct: 534 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 593
Query: 275 RKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIE 334
R LW A P K +A A QF+GY QHD+QE +AFLLDGLHEDLNR++ KPY E
Sbjct: 594 RALWKGTHQAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 653
Query: 335 MKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTL 394
DS GRPDE VA E W+ HK RNDS IVD+FQGQYKS LVCPVC+KVSITFDPF+YL +
Sbjct: 654 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 713
Query: 395 PLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLIL-ALSTACCLKIDEGLLLAE 453
PLP + + + F P+ F V++ K +L +LS + +K E L LAE
Sbjct: 714 PLPQK-QKVLPIYYFAREPHSKPIKFLVSVSKENSSASEVLESLSQSVHVK-PESLRLAE 771
Query: 454 VYNHQIFRFF 463
V ++ R F
Sbjct: 772 VIKNRFHRVF 781
Score = 160 bits (404), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 80/182 (43%), Positives = 112/182 (61%), Gaps = 9/182 (4%)
Query: 641 KDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLW 700
K+L G + R +L CL+ F E L P++ WYCPQCK+HR+A+K+L LW
Sbjct: 1077 KELECAEDPGSAGEAARAGHFTLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLW 1136
Query: 701 MLPDVLVFHLKRFSYSRYL-KNKLDTFVNFPILNLDLSKY-MKSKDGESYVYDLFAISNH 758
LP+VL+ LKRFS+ ++ ++K++ V FP+ NLDLSK+ + K+ + YDL+A+ NH
Sbjct: 1137 RLPNVLIVQLKRFSFRSFIWRDKINDLVEFPVRNLDLSKFCIGQKEEQLPSYDLYAVINH 1196
Query: 759 YGGLGGGHYTAYAKLIDENR-------WYHFDDSHVSPVSEGDIKTSAAYVLFYRRVKSK 811
YGG+ GGHYTA A+L + W FDDS V+ V E + T AYVLFYRR S
Sbjct: 1197 YGGMIGGHYTACARLPSDRSSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRRRNSP 1256
Query: 812 TK 813
+
Sbjct: 1257 VE 1258
>sp|Q3UJD6|UBP19_MOUSE Ubiquitin carboxyl-terminal hydrolase 19 OS=Mus musculus GN=Usp19
PE=2 SV=1
Length = 1360
Score = 248 bits (633), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 129/250 (51%), Positives = 158/250 (63%), Gaps = 4/250 (1%)
Query: 216 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLG-DYSDEINTENPLGMHGELALAFGDLL 274
G GL NLGNTCFMNS +Q L +T +L +F + EIN NPLG G LA+ F LL
Sbjct: 537 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 596
Query: 275 RKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIE 334
R LW A P K +A A QF+GY QHD+QE +AFLLDGLHEDLNR++ KPY E
Sbjct: 597 RALWKGTHQAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 656
Query: 335 MKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTL 394
DS GRPDE VA E W+ HK RNDS IVD+FQGQYKS LVCPVC+KVSITFDPF+YL +
Sbjct: 657 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 716
Query: 395 PLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLIL-ALSTACCLKIDEGLLLAE 453
PLP + + + F P+ F V++ K +L +LS + +K E L LAE
Sbjct: 717 PLPQK-QKVLPIFYFAREPHSKPIKFLVSVSKENSSASEVLDSLSQSVHVK-PENLRLAE 774
Query: 454 VYNHQIFRFF 463
V ++ R F
Sbjct: 775 VIKNRFHRVF 784
Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 117/193 (60%), Gaps = 10/193 (5%)
Query: 641 KDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLW 700
K+L G + R +L CL+ F E L P++ WYCPQCK+HR+A+K+L LW
Sbjct: 1080 KELECAEDPGSAGEAARAGHFTLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLW 1139
Query: 701 MLPDVLVFHLKRFSYSRYL-KNKLDTFVNFPILNLDLSKY-MKSKDGESYVYDLFAISNH 758
LP+VL+ LKRFS+ ++ ++K++ V FP+ NLDLSK+ + K+ + YDL+A+ NH
Sbjct: 1140 RLPNVLIVQLKRFSFRSFIWRDKINDLVEFPVRNLDLSKFCIGQKEEQLPSYDLYAVINH 1199
Query: 759 YGGLGGGHYTAYAKLIDENR-------WYHFDDSHVSPVSEGDIKTSAAYVLFYRRVKSK 811
YGG+ GGHYTA A+L ++ W FDDS V+ V E + T AYVLFYRR S
Sbjct: 1200 YGGMIGGHYTACARLPNDRSSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRRRNSP 1259
Query: 812 T-KAEMAETSQGH 823
+ A S+ H
Sbjct: 1260 VERPPRASHSEHH 1272
>sp|Q8NFA0|UBP32_HUMAN Ubiquitin carboxyl-terminal hydrolase 32 OS=Homo sapiens GN=USP32
PE=1 SV=1
Length = 1604
Score = 242 bits (617), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 121/248 (48%), Positives = 163/248 (65%), Gaps = 3/248 (1%)
Query: 216 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFL-GDYSDEINTENPLGMHGELALAFGDLL 274
G GL NLGNTCFMNS++QC+ +T L QYF+ G + E+N NP+GM G +A +GDL+
Sbjct: 732 GATGLSNLGNTCFMNSSIQCVSNTQPLTQYFISGRHLYELNRTNPIGMKGHMAKCYGDLV 791
Query: 275 RKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIE 334
++LWS + VAP + +A++AP+F+G+ Q DSQELLAFLLDGLHEDLNRV +KPY+E
Sbjct: 792 QELWSGTQKNVAPLKLRWTIAKYAPRFNGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVE 851
Query: 335 MKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTL 394
+KDS GRPD EVA E W NH RN S++VD+F GQ +S + C C +S+ FDPF +L+L
Sbjct: 852 LKDSDGRPDWEVAAEAWDNHLRRNRSIVVDLFHGQLRSQVKCKTCGHISVRFDPFNFLSL 911
Query: 395 PLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEV 454
PLP + +TV +G+ P+ + + L L LS C L E +LLAEV
Sbjct: 912 PLPMDSYMHLEITVIKLDGT-TPVRYGLRLNMDEKYTGLKKQLSDLCGLN-SEQILLAEV 969
Query: 455 YNHQIFRF 462
+ I F
Sbjct: 970 HGSNIKNF 977
Score = 87.4 bits (215), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 65/100 (65%), Gaps = 4/100 (4%)
Query: 647 HKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVL 706
H++ ++ + E I+L SCL AF +EE LG ++M+YC +CK H ATKKLDLW LP +L
Sbjct: 1219 HESVEQSRRAQAEPINLDSCLRAFTSEEELGENEMYYCSKCKTHCLATKKLDLWRLPPIL 1278
Query: 707 VFHLKRFSY--SRYLKNKLDTFVNFPILNLDLSKYMKSKD 744
+ HLKRF + R++K++ V FP + D S ++ +D
Sbjct: 1279 IIHLKRFQFVNGRWIKSQ--KIVKFPRESFDPSAFLVPRD 1316
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 749 VYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRR 807
+Y+L+AIS H G LGGGHY YAK + +WY ++DS + +I T +AY+LFY +
Sbjct: 1509 IYNLYAISCHSGILGGGHYVTYAKNPN-CKWYCYNDSSCKELHPDEIDTDSAYILFYEQ 1566
>sp|P35125|UBP6_HUMAN Ubiquitin carboxyl-terminal hydrolase 6 OS=Homo sapiens GN=USP6
PE=1 SV=2
Length = 1406
Score = 241 bits (614), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 122/259 (47%), Positives = 169/259 (65%), Gaps = 3/259 (1%)
Query: 216 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFL-GDYSDEINTENPLGMHGELALAFGDLL 274
G GL NLGNTCFMNS++QC+ +T L QYF+ G + E+N NP+GM G +A +GDL+
Sbjct: 530 GATGLSNLGNTCFMNSSIQCVSNTQPLTQYFISGRHLYELNRTNPIGMKGHMAKCYGDLV 589
Query: 275 RKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIE 334
++LWS + +VAP + +A++AP+F G+ Q DSQELLAFLLDGLHEDLNRV +KPY+E
Sbjct: 590 QELWSGTQKSVAPLKLRRTIAKYAPKFDGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVE 649
Query: 335 MKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTL 394
+KDS GRPD EVA E W NH RN S+IVD+F GQ +S + C C +S+ FDPF +L+L
Sbjct: 650 LKDSDGRPDWEVAAEAWDNHLRRNRSIIVDLFHGQLRSQVKCKTCGHISVRFDPFNFLSL 709
Query: 395 PLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEV 454
PLP + +TV +G+ P+ + + L L L C L E +LLAEV
Sbjct: 710 PLPMDSYMDLEITVIKLDGT-TPVRYGLRLNMDEKYTGLKKQLRDLCGLN-SEQILLAEV 767
Query: 455 YNHQIFRFFENPAELISSI 473
++ I F ++ ++ S+
Sbjct: 768 HDSNIKNFPQDNQKVQLSV 786
Score = 79.7 bits (195), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 57/98 (58%)
Query: 647 HKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVL 706
H++ ++ + E I+L SCL AF +EE LG +M+YC +CK H ATKKLDLW LP L
Sbjct: 1017 HESVEQSRRAQAEPINLDSCLRAFTSEEELGESEMYYCSKCKTHCLATKKLDLWRLPPFL 1076
Query: 707 VFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKD 744
+ HLKRF + K V F + D S ++ +D
Sbjct: 1077 IIHLKRFQFVNDQWIKSQKIVRFLRESFDPSAFLVPRD 1114
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 749 VYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRR 807
+Y+L+AIS H G L GGHY YAK + +WY ++DS + +I T +AY+LFY +
Sbjct: 1311 IYNLYAISCHSGILSGGHYITYAKNPN-CKWYCYNDSSCEELHPDEIDTDSAYILFYEQ 1368
>sp|Q8BUM9|UBP43_MOUSE Ubiquitin carboxyl-terminal hydrolase 43 OS=Mus musculus GN=Usp43
PE=2 SV=2
Length = 1132
Score = 230 bits (587), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 191/687 (27%), Positives = 306/687 (44%), Gaps = 112/687 (16%)
Query: 190 SSFGSTFMDMDDGYDSYNTAKKGEKG-GLAGLQNLGNTCFMNSALQCLVHTPDLAQYF-L 247
+S GS D G ++ G + G GL+N GNTCFMN+ +QCL +T LA++ L
Sbjct: 72 ASAGSPGPDRPPGSQPQISSGDGARPPGAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLAL 131
Query: 248 GDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQH 307
G Y E+ L+R LW+ FK ++++ QF G +QH
Sbjct: 132 GRYRAAPG-------RAEVTEQLAALVRALWTREYTPQLSAEFKNAVSKYGSQFQGNSQH 184
Query: 308 DSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARND---SLIVD 364
D+ E L +LLD +HEDL E P+ +E + A S +
Sbjct: 185 DALEFLLWLLDRVHEDLEGSAHGLVSEQLP----PEVSKISEDLRPSAAPTSLGPSFVQS 240
Query: 365 VFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGS------GLPM 418
FQ QY+S+L CP C K S TFDPF+ ++LP+P TR ++VT+ + + S GL +
Sbjct: 241 HFQAQYRSSLTCPHCLKQSNTFDPFLCVSLPIPLRQTRFLSVTLVFPSKSQRFLRVGLAV 300
Query: 419 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFR-FFENPAELISSIKDDE 477
P T+ L ++ + +E ++L E+Y + R FF+ E +++I + +
Sbjct: 301 PILSTVAA------LRKMVAEEGGVPAEE-VILVELYPNGFQRSFFDE--EDLNTIAEGD 351
Query: 478 HIVAYRFDRKQG-GKIK-----LEIVNRWQEKSASDYL------------------KGSE 513
++ A++ G G + L + R + + + G +
Sbjct: 352 NVYAFQVPPSPGLGTLSAHPSGLSVSPRLPVRDSQRFSGPLHSENRVVFLFCNLVGSGQQ 411
Query: 514 RKLFGAPLVTYLEEEHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSN 573
FG P + E+ +S A + + + L R+ SA+ G F
Sbjct: 412 ASRFGPPFLIR-EDRTISWAQLQQCILSKVRCLMRSEVSAQDLG---TLF---------- 457
Query: 574 SHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKD-SILKPG--KHIKVLLDWTDD 630
S+ L CS LS D R + + + +PG H+K+ ++W
Sbjct: 458 ----SIRVVGLSLACS-----YLSPKDNRPLCHWAVDRALHLRRPGGPPHVKLAVEWDSS 508
Query: 631 VHELYDPSY----IKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQ 686
V E S ++D V + + +Q + +L C ++ EE L DD W CP
Sbjct: 509 VTERLFGSLQEERVQDADSVWRQ---QQAHQQPSCTLDECFQSYTKEEQLAQDDAWKCPH 565
Query: 687 CKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGE 746
C+ +Q KL LW LPD+L+ HLKRF +NKL T V FP+ L+++ ++ +
Sbjct: 566 CQVLQQGVVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVKFPLSGLNMAPHVARRSTN 625
Query: 747 S-----------------------YVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFD 783
S ++YDL+A+ NH+G L GGHYTAY + + +WY +D
Sbjct: 626 SKAGPGPWSSWKQPICLPTTYPLDFLYDLYAVCNHHGSLQGGHYTAYCRNSLDGQWYSYD 685
Query: 784 DSHVSPVSEGDIKTSAAYVLFYRRVKS 810
DS V + E ++ T AY+LFY++ S
Sbjct: 686 DSTVEALREDEVNTRGAYILFYQKRNS 712
>sp|Q70EL4|UBP43_HUMAN Ubiquitin carboxyl-terminal hydrolase 43 OS=Homo sapiens GN=USP43
PE=1 SV=2
Length = 1123
Score = 227 bits (579), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 189/659 (28%), Positives = 294/659 (44%), Gaps = 109/659 (16%)
Query: 216 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYF-LGDYSDEINTENPLGMHGELALAFGDLL 274
G GL+N GNTCFMN+ +QCL +T LA++ LG Y E+ L+
Sbjct: 99 GAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAAPG-------RAEVTEQLAALV 151
Query: 275 RKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIE 334
R LW+ FK ++++ QF G +QHD+ E L +LLD +HEDL + P E
Sbjct: 152 RALWTREYTPQLSAEFKNAVSKYGSQFQGNSQHDALEFLLWLLDRVHEDLEGSSRGPVSE 211
Query: 335 MKDSGGRPDEEVANECWKNHKAR---NDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMY 391
P+ +E + A+ S + FQ QY+S+L CP C K S TFDPF+
Sbjct: 212 KLP----PEATKTSENCLSPSAQLPLGQSFVQSHFQAQYRSSLTCPHCLKQSNTFDPFLC 267
Query: 392 LTLPLPSTVTRTMTVTVFYANGS------GLPMPF--TVTLMKHGCCKDLILALSTACCL 443
++LP+P TR ++VT+ + + S GL +P TV ++ ++ + +
Sbjct: 268 VSLPIPLRQTRFLSVTLVFPSKSQRFLRVGLAVPILSTVAALRKMVAEEGGVPADEVILV 327
Query: 444 KI----------DEGLL--LAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGK 491
++ DE L +AE N F+ +P++ S + R ++G +
Sbjct: 328 ELYPSGFQRSFFDEEDLNTIAEGDNVYAFQVPPSPSQGTLSAHPLGLSASPRLAAREGQR 387
Query: 492 IKLEIVNRWQEKSASDYL--------KGSERKLFGAPLVTYLEEEHLSGADIDIAVSKLL 543
L + S S L G + FG P + E+ +S A + ++ L
Sbjct: 388 FSLSL------HSESKVLILFCNLVGSGQQASRFGPPFLIR-EDRAVSWAQLQQSI---L 437
Query: 544 SPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERI 603
S +R S + F S+ L CS LS D R
Sbjct: 438 SKVRHLMKSEAPVQNLGSLF--------------SIRVVGLSVACS-----YLSPKDSR- 477
Query: 604 SSCKPI---QKDSIL---KPG--KHIKVLLDWTDDVHE-LYDPSYIKDLPVVHKTGFTVK 654
P+ D +L +PG H+K+ ++W V E L+ + +
Sbjct: 478 ----PLCHWAVDRVLHLRRPGGPPHVKLAVEWDSSVKERLFGSLQEERAQDADSVWQQQQ 533
Query: 655 KTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFS 714
+Q + +L C + EE L DD W CP C+ +Q KL LW LPD+L+ HLKRF
Sbjct: 534 AHQQHSCTLDECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDILIIHLKRFC 593
Query: 715 YSRYLKNKLDTFVNFPILNLDLSKYM--KSKDGES---------------------YVYD 751
+NKL T V FP+ L+++ ++ +S E+ ++YD
Sbjct: 594 QVGERRNKLSTLVKFPLSGLNMAPHVAQRSTSPEAGLGPWPSWKQPDCLPTSYPLDFLYD 653
Query: 752 LFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRVKS 810
L+A+ NH+G L GGHYTAY + + +WY +DDS V P+ E ++ T AY+LFY++ S
Sbjct: 654 LYAVCNHHGNLQGGHYTAYCRNSLDGQWYSYDDSTVEPLREDEVNTRGAYILFYQKRNS 712
>sp|P39538|UBP12_YEAST Ubiquitin carboxyl-terminal hydrolase 12 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UBP12 PE=1
SV=1
Length = 1254
Score = 223 bits (567), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 138/351 (39%), Positives = 184/351 (52%), Gaps = 31/351 (8%)
Query: 202 GYDSYNTAKKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPL 260
Y +YN + G GL NLGNTC+MNSALQCLVH P L YFL D Y DEIN ENPL
Sbjct: 350 NYFAYNKLEPA--SGTTGLVNLGNTCYMNSALQCLVHIPQLRDYFLYDGYEDEINEENPL 407
Query: 261 GMHGELALAFGDLLRKLWSSG------RAAVAPRAFKGKLARFAPQFSGYNQHDSQELLA 314
G HG +A AF DL++KL+ + AA P FK + F FSGY Q DSQE LA
Sbjct: 408 GYHGYVARAFSDLVQKLFQNRMSIMQRNAAFPPSMFKSTIGHFNSMFSGYMQQDSQEFLA 467
Query: 315 FLLDGLHEDLNRVKQKPYIEMKDSGGRPD-------EEVANECWKNHKARNDSLIVDVFQ 367
FLLD LHEDLNR+ +K Y E D +++A++ W+ H RN S+I D+F
Sbjct: 468 FLLDSLHEDLNRIIKKEYTEKPSLSPGDDVNDWNVVKKLADDTWEMHLKRNCSVITDLFV 527
Query: 368 GQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKH 427
G YKSTL CP C VSITFDP+ +TLPLP T+ +F N P+ V L K
Sbjct: 528 GMYKSTLYCPECQNVSITFDPYNDVTLPLPVDTVWDKTIKIFPMNSP--PLLLEVELSKS 585
Query: 428 GCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAE------LISSIKDDEHIVA 481
DL + L + L E++++QI+ +E+ L IK + ++
Sbjct: 586 STYMDLKNYVGKMSGLDPN-TLFGCEIFSNQIYVNYESTESNAQFLTLQELIKPADDVIF 644
Query: 482 YRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSG 532
Y ++ + ++N EK + + LFG P L+E+ L+
Sbjct: 645 YELPVTNDNEVIVPVLNTRIEKGYKNAM------LFGVPFFITLKEDELNN 689
Score = 159 bits (403), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 103/152 (67%), Gaps = 1/152 (0%)
Query: 657 RQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYS 716
++ I+L CL F E LG D WYCP CKEHRQATK++ LW PD+L+ HLKRF
Sbjct: 958 KERTITLDDCLQLFSKPEILGLTDSWYCPTCKEHRQATKQIQLWNTPDILLIHLKRFESQ 1017
Query: 717 RYLKNKLDTFVNFPILNLDLSKYMKSKDG-ESYVYDLFAISNHYGGLGGGHYTAYAKLID 775
R +K+D VNFPI +LDLS+Y+ KD +YDL+A+ NHYGGLGGGHYTAY K
Sbjct: 1018 RSFSDKIDATVNFPITDLDLSRYVVYKDDPRGLIYDLYAVDNHYGGLGGGHYTAYVKNFA 1077
Query: 776 ENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRR 807
+N+WY+FDDS V+ + + +AY+LFY R
Sbjct: 1078 DNKWYYFDDSRVTETAPENSIAGSAYLLFYIR 1109
>sp|P40818|UBP8_HUMAN Ubiquitin carboxyl-terminal hydrolase 8 OS=Homo sapiens GN=USP8
PE=1 SV=1
Length = 1118
Score = 188 bits (477), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 92/194 (47%), Positives = 126/194 (64%), Gaps = 1/194 (0%)
Query: 212 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAF 270
G L GL+NLGNTC+MNS LQCL + P LA YF + Y D+IN N LG GE+A F
Sbjct: 771 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEF 830
Query: 271 GDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQK 330
G +++ LW+ ++P+ FK + + QF+GY+Q DSQELL FL+DGLHEDLN+ +
Sbjct: 831 GIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 890
Query: 331 PYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFM 390
+ +++ D + A W+ HK N+S+IV +FQGQ+KST+ C C K S TF+ FM
Sbjct: 891 KRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 950
Query: 391 YLTLPLPSTVTRTM 404
YL+LPL ST T+
Sbjct: 951 YLSLPLASTSKCTL 964
Score = 143 bits (361), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 94/144 (65%)
Query: 662 SLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKN 721
+L CL F EE L ++ +YC C+ R + KK+++W LP VL+ HLKRFSY K
Sbjct: 963 TLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQ 1022
Query: 722 KLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYH 781
KL T V+FP+ NLDLS+Y+ Y+LF++SNHYGGL GGHYTAY K RW+
Sbjct: 1023 KLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFK 1082
Query: 782 FDDSHVSPVSEGDIKTSAAYVLFY 805
FDD VS +S +K+SAAY+LFY
Sbjct: 1083 FDDHEVSDISVSSVKSSAAYILFY 1106
>sp|Q80U87|UBP8_MOUSE Ubiquitin carboxyl-terminal hydrolase 8 OS=Mus musculus GN=Usp8
PE=1 SV=2
Length = 1080
Score = 183 bits (465), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 90/194 (46%), Positives = 125/194 (64%), Gaps = 1/194 (0%)
Query: 212 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAF 270
G L GL+NLGNTC+MNS LQCL + P LA YF + Y D+IN N LG GE+A F
Sbjct: 733 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEF 792
Query: 271 GDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQK 330
G +++ LW+ ++P+ FK + + QF+G +Q DSQELL FL+DGLHEDLN+ +
Sbjct: 793 GIIMKALWTGQYRYISPKDFKVTIGKINDQFAGSSQQDSQELLLFLMDGLHEDLNKADNR 852
Query: 331 PYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFM 390
+ +++ D + A W+ HK N+S+IV +FQGQ+KST+ C C + S TF+ FM
Sbjct: 853 KRHKEENNEHLDDLQAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCRRRSRTFEAFM 912
Query: 391 YLTLPLPSTVTRTM 404
YL+LPL ST T+
Sbjct: 913 YLSLPLASTSKCTL 926
Score = 143 bits (360), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 71/144 (49%), Positives = 94/144 (65%)
Query: 662 SLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKN 721
+L CL F EE L ++ +YC C+ R + KK+++W LP VL+ HLKRFSY K
Sbjct: 925 TLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQ 984
Query: 722 KLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYH 781
KL T V+FP+ NLDLS+Y+ Y+LF++SNHYGGL GGHYTAY K RW+
Sbjct: 985 KLQTSVDFPLENLDLSQYVIGPKNSLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFK 1044
Query: 782 FDDSHVSPVSEGDIKTSAAYVLFY 805
FDD VS +S +++SAAY+LFY
Sbjct: 1045 FDDHEVSDISVSSVRSSAAYILFY 1068
>sp|Q01988|UBP11_CANFA Ubiquitin carboxyl-terminal hydrolase 11 (Fragment) OS=Canis
familiaris GN=USP11 PE=2 SV=1
Length = 445
Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/190 (45%), Positives = 122/190 (64%), Gaps = 8/190 (4%)
Query: 623 VLLDWTDDVHELYDPSYIKDLPVVHK-TGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDM 681
+ +DW ++ + Y + V H G+ +KK + L C++ F T E L ++
Sbjct: 225 IAIDWEPEMKKRYYDEVEAEGYVKHDCVGYVLKKA---PVRLQECIELFTTVETLEKENP 281
Query: 682 WYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMK 741
W+CP CK+H+ ATKKLDLWMLP+ L+ HLKRFSY+++ + KLDT V FPI +LD S+++
Sbjct: 282 WFCPTCKQHQLATKKLDLWMLPETLIIHLKRFSYTKFSREKLDTLVEFPIRDLDFSEFVI 341
Query: 742 SKDGES----YVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKT 797
ES Y YDL A+SNHYGGL GHYT +A D + +FDD+ VSPV+E I++
Sbjct: 342 KPQNESAPELYKYDLIAVSNHYGGLRDGHYTTFACNKDSGQSDYFDDNSVSPVTENQIES 401
Query: 798 SAAYVLFYRR 807
AAYVLFY+R
Sbjct: 402 KAAYVLFYQR 411
>sp|O57429|UBP2_CHICK Ubiquitin carboxyl-terminal hydrolase 2 OS=Gallus gallus GN=USP2
PE=2 SV=1
Length = 357
Score = 164 bits (415), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 85/184 (46%), Positives = 114/184 (61%), Gaps = 4/184 (2%)
Query: 216 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLL 274
GL GL+NLGNTCFMNS LQCL +T +L Y L + Y ++N N M L F L+
Sbjct: 17 GLTGLRNLGNTCFMNSILQCLSNTKELRDYCLQNQYLRDLN--NNSRMRTALMSEFAKLI 74
Query: 275 RKLW-SSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYI 333
+ LW SS +V+P FK ++ R+AP+F GYNQ D+QE L FLLDGLH ++NRV +P
Sbjct: 75 QLLWTSSPNDSVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHGEVNRVLVRPRA 134
Query: 334 EMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLT 393
PD+E + + W+ ++ R DS + D+F GQ KS+L C C S FDPF L+
Sbjct: 135 NADTLDHLPDDEKSRQMWRRYQEREDSRVSDLFVGQLKSSLTCSECGYCSTAFDPFWDLS 194
Query: 394 LPLP 397
LP+P
Sbjct: 195 LPIP 198
Score = 133 bits (334), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 101/171 (59%), Gaps = 9/171 (5%)
Query: 635 YDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQAT 694
+DP + LP+ K G+ ++L CL F E+ L D+ C +CK + T
Sbjct: 187 FDPFWDLSLPIPKK-GYG-------EVTLMDCLRLFTKEDVLDGDEKPTCCRCKARTRCT 238
Query: 695 KKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFA 754
KK + P +LV HLKRFS +R +KL TFVNFP+ +LDL ++ S+ VY+L+A
Sbjct: 239 KKFSIQKFPKILVLHLKRFSEARIRASKLTTFVNFPLKDLDLREF-ASQSCNHAVYNLYA 297
Query: 755 ISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFY 805
+SNH G GGHYTAY K + W+ F+DS V+P+S +++S AY+LFY
Sbjct: 298 VSNHSGTTMGGHYTAYCKSPISSEWHSFNDSRVTPMSSSHVRSSDAYLLFY 348
>sp|O88623|UBP2_MOUSE Ubiquitin carboxyl-terminal hydrolase 2 OS=Mus musculus GN=Usp2
PE=1 SV=2
Length = 613
Score = 159 bits (403), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 84/183 (45%), Positives = 110/183 (60%), Gaps = 4/183 (2%)
Query: 216 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLL 274
GLAGL+NLGNTCFMNS LQCL +T +L Y L Y ++ + H L F L+
Sbjct: 273 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLGHTS--SAHTALMEEFAKLI 330
Query: 275 RKLW-SSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYI 333
+ +W SS V+P FK ++ R+AP+F GYNQ D+QE L FLLDGLH ++NRV +P
Sbjct: 331 QTIWTSSPNDVVSPSEFKTQIQRYAPRFMGYNQQDAQEFLRFLLDGLHNEVNRVAARPKA 390
Query: 334 EMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLT 393
+ PDEE + W+ + R DS I D+F GQ KS+L C C S FDPF L+
Sbjct: 391 SPETLDHLPDEEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLS 450
Query: 394 LPL 396
LP+
Sbjct: 451 LPI 453
Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 102/172 (59%), Gaps = 9/172 (5%)
Query: 634 LYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQA 693
++DP + LP+ K G+ ++L C+ F E+ L D+ C +C+ ++
Sbjct: 442 VFDPFWDLSLPIA-KRGY-------PEVTLMDCMRLFTKEDILDGDEKPTCCRCRARKRC 493
Query: 694 TKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLF 753
KK + P +LV HLKRFS SR +KL TFVNFP+ +LDL ++ S++ VY+L+
Sbjct: 494 IKKFSVQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFA-SENTNHAVYNLY 552
Query: 754 AISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFY 805
A+SNH G GGHYTAY + W+ F+DS V+P+S ++TS AY+LFY
Sbjct: 553 AVSNHSGTTMGGHYTAYCRSPVTGEWHTFNDSSVTPMSSSQVRTSDAYLLFY 604
>sp|Q5U349|UBP2_RAT Ubiquitin carboxyl-terminal hydrolase 2 OS=Rattus norvegicus
GN=Usp2 PE=1 SV=1
Length = 618
Score = 159 bits (402), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 84/183 (45%), Positives = 110/183 (60%), Gaps = 4/183 (2%)
Query: 216 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLL 274
GLAGL+NLGNTCFMNS LQCL +T +L Y L Y ++ + H L F L+
Sbjct: 278 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLGHTS--SAHTALMEEFAKLI 335
Query: 275 RKLW-SSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYI 333
+ +W SS V+P FK ++ R+AP+F GYNQ D+QE L FLLDGLH ++NRV +P
Sbjct: 336 QTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVAARPKP 395
Query: 334 EMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLT 393
+ PDEE + W+ + R DS I D+F GQ KS+L C C S FDPF L+
Sbjct: 396 SPESLDHLPDEEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLS 455
Query: 394 LPL 396
LP+
Sbjct: 456 LPI 458
Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 102/172 (59%), Gaps = 9/172 (5%)
Query: 634 LYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQA 693
++DP + LP+ K G+ ++L C+ F E+ L D+ C +C+ ++
Sbjct: 447 VFDPFWDLSLPIA-KRGY-------PEVTLMDCMRLFTKEDVLDGDEKPTCCRCRARKRC 498
Query: 694 TKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLF 753
KK + P +LV HLKRFS SR +KL TFVNFP+ +LDL ++ S++ VY+L+
Sbjct: 499 IKKFSVQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFA-SENTNHAVYNLY 557
Query: 754 AISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFY 805
A+SNH G GGHYTAY + W+ F+DS V+P+S ++TS AY+LFY
Sbjct: 558 AVSNHSGTTMGGHYTAYCRSPVTGEWHTFNDSSVTPMSSSQVRTSDAYLLFY 609
>sp|Q2KHV7|UBP2_BOVIN Ubiquitin carboxyl-terminal hydrolase 2 OS=Bos taurus GN=USP2 PE=2
SV=1
Length = 606
Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/187 (44%), Positives = 110/187 (58%), Gaps = 12/187 (6%)
Query: 216 GLAGLQNLGNTCFMNSALQCLVHTPDLAQY-----FLGDYSDEINTENPLGMHGELALAF 270
GLAGL+NLGNTCFMNS LQCL +T +L Y +L D S H L F
Sbjct: 266 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYLRDLSHSSRA------HTALMEEF 319
Query: 271 GDLLRKLW-SSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQ 329
L++ +W SS V+P FK ++ R+AP+F GYNQ D+QE L FLLDGLH ++NRV
Sbjct: 320 AKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVIA 379
Query: 330 KPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPF 389
+P ++ PD+E + W+ + R DS I D+F GQ KS+L C C S FDPF
Sbjct: 380 RPKSNTENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPF 439
Query: 390 MYLTLPL 396
L+LP+
Sbjct: 440 WDLSLPI 446
Score = 107 bits (268), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 101/172 (58%), Gaps = 9/172 (5%)
Query: 634 LYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQA 693
++DP + LP+ K G+ ++L C+ F E+ L D+ C +C+ ++
Sbjct: 435 VFDPFWDLSLPIT-KRGY-------PEVTLMDCMRLFTKEDVLDGDEKPTCCRCRARKRC 486
Query: 694 TKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLF 753
KK + P +LV HLKRFS SR +KL FVNFP+ +LDL ++ S++ VY+L+
Sbjct: 487 IKKFSIQRFPKILVLHLKRFSESRIRTSKLTAFVNFPLRDLDLREFA-SENTNHAVYNLY 545
Query: 754 AISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFY 805
A+SNH G GGHYTAY + W+ F+DS VSP+S ++TS AY+LFY
Sbjct: 546 AVSNHSGTTMGGHYTAYCRSPVTGEWHTFNDSSVSPMSSSQVRTSDAYLLFY 597
>sp|O75604|UBP2_HUMAN Ubiquitin carboxyl-terminal hydrolase 2 OS=Homo sapiens GN=USP2
PE=1 SV=2
Length = 605
Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 122/213 (57%), Gaps = 12/213 (5%)
Query: 186 QYPGSSFGSTFMDMDDGYDSYNTAKKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQY 245
Q PG S S+ G D N+ GLAGL+NLGNTCFMNS LQCL +T +L Y
Sbjct: 243 QAPGPSRSSS-----PGRDGMNSK---SAQGLAGLRNLGNTCFMNSILQCLSNTRELRDY 294
Query: 246 FLGD-YSDEINTENPLGMHGELALAFGDLLRKLW-SSGRAAVAPRAFKGKLARFAPQFSG 303
L Y +++ + H L F L++ +W SS V+P FK ++ R+AP+F G
Sbjct: 295 CLQRLYMRDLHHGS--NAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVG 352
Query: 304 YNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIV 363
YNQ D+QE L FLLDGLH ++NRV +P ++ PD+E + W+ + R DS I
Sbjct: 353 YNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIG 412
Query: 364 DVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPL 396
D+F GQ KS+L C C S FDPF L+LP+
Sbjct: 413 DLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPI 445
Score = 120 bits (302), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 102/172 (59%), Gaps = 9/172 (5%)
Query: 634 LYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQA 693
++DP + LP+ K G+ ++L C+ F E+ L D+ C +C+ ++
Sbjct: 434 VFDPFWDLSLPIA-KRGY-------PEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRC 485
Query: 694 TKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLF 753
KK + P +LV HLKRFS SR +KL TFVNFP+ +LDL ++ S++ VY+L+
Sbjct: 486 IKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFA-SENTNHAVYNLY 544
Query: 754 AISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFY 805
A+SNH G GGHYTAY + W+ F+DS V+P+S ++TS AY+LFY
Sbjct: 545 AVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFY 596
>sp|Q70CQ4|UBP31_HUMAN Ubiquitin carboxyl-terminal hydrolase 31 OS=Homo sapiens GN=USP31
PE=2 SV=2
Length = 1352
Score = 150 bits (380), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 121/243 (49%), Gaps = 38/243 (15%)
Query: 598 LTDERISSCKPIQKDSI--LKPG--KHIKVLLDWTDDVHELY----DPSYIKDLPVVHKT 649
L E C PI + ++ PG H+K++++W + + + YI D V
Sbjct: 527 LPQEEQPLCHPIVERALKSCGPGGTAHVKLVVEWDKETRDFLFVNTEDEYIPDAESVR-- 584
Query: 650 GFTVKKTRQ---EAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVL 706
+++ R + +L C + EE L PDD W CP CK+ +Q + L LW LPDVL
Sbjct: 585 ---LQRERHHQPQTCTLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVL 641
Query: 707 VFHLKRFSYSRYLKNKLDTFVNFPILNLDLSK----------------------YMKSKD 744
+ HLKRF + KL V FP+ LD++ Y +D
Sbjct: 642 IIHLKRFRQEGDRRMKLQNMVKFPLTGLDMTPHVVKRSQSSWSLPSHWSPWRRPYGLGRD 701
Query: 745 GESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLF 804
E Y+YDL+A+ NH+G + GGHYTAY K + WY FDDS V +SE ++ T AY+LF
Sbjct: 702 PEDYIYDLYAVCNHHGTMQGGHYTAYCKNSVDGLWYCFDDSDVQQLSEDEVCTQTAYILF 761
Query: 805 YRR 807
Y+R
Sbjct: 762 YQR 764
Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 131/262 (50%), Gaps = 23/262 (8%)
Query: 216 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYF-LGDY-----SDEINTENPLGM----HGE 265
G+AGL+N GNTCFMN+ LQCL +T A+Y LG Y + E P G GE
Sbjct: 126 GVAGLRNHGNTCFMNATLQCLSNTELFAEYLALGQYRAGRPEPSPDPEQPAGRGAQGQGE 185
Query: 266 LALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLN 325
+ L+R LW+ R FK +++ A Q+ G +QHD+QE L +LLD +HEDLN
Sbjct: 186 VTEQLAHLVRALWTLEYTPQHSRDFKTIVSKNALQYRGNSQHDAQEFLLWLLDRVHEDLN 245
Query: 326 ----RVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSK 381
+ Q P ++ P+ C + + ++FQ QY+S+L CP C K
Sbjct: 246 HSVKQSGQPPLKPPSETDMMPEGPSFPVC--------STFVQELFQAQYRSSLTCPHCQK 297
Query: 382 VSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTAC 441
S TFDPF+ ++LP+P TR + VTV Y M V + G L A+S
Sbjct: 298 QSNTFDPFLCISLPIPLPHTRPLYVTVVYQGKCSHCMRIGVAVPLSGTVARLREAVSMET 357
Query: 442 CLKIDEGLLLAEVYNHQIFRFF 463
+ D+ ++L E+Y R F
Sbjct: 358 KIPTDQ-IVLTEMYYDGFHRSF 378
>sp|Q754R5|UBP4_ASHGO Ubiquitin carboxyl-terminal hydrolase 4 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=DOA4 PE=3 SV=2
Length = 852
Score = 132 bits (333), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 107/205 (52%), Gaps = 17/205 (8%)
Query: 218 AGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRK 276
GL N GN+C+M+ +QCL+ T +L FL + Y + IN + LG G LA F L+ +
Sbjct: 488 VGLVNCGNSCYMSCIIQCLLGTQELCTMFLNNSYQNHINLNSRLGSKGLLARYFSQLIHQ 547
Query: 277 LWSSGR----------AAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNR 326
++ G+ AV P FK F Q D QE FLLDGLHEDLN+
Sbjct: 548 MYQYGKDIRKKMGNEKTAVIPTQFKIACGSINSSFKDNTQQDCQEFCQFLLDGLHEDLNQ 607
Query: 327 VKQKPYI-EMKDSGGRPDEEVANEC-----WKNHKARNDSLIVDVFQGQYKSTLVCPVCS 380
P + E+ + + E + W+ + + S+IVD+FQGQY S L C VC
Sbjct: 608 CGNNPPLKELSEEAEKMREMMPMRLASAIEWERYLTTDFSVIVDLFQGQYASQLQCKVCQ 667
Query: 381 KVSITFDPFMYLTLPLPSTVTRTMT 405
+ S T+ PF L++P+PST T T+T
Sbjct: 668 RTSTTYQPFSVLSVPVPSTRTCTLT 692
Score = 87.8 bits (216), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 84/165 (50%), Gaps = 19/165 (11%)
Query: 662 SLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKN 721
+L C F E L ++ W CP CK+ + +TKK+ + LP L+ HLKRF + N
Sbjct: 690 TLTDCFTEFTKIETLEQEEQWSCPSCKKRQPSTKKITITRLPRNLIIHLKRFD---NMLN 746
Query: 722 KLDTFVNFP-ILNL------DLSKYMKSKDGE--------SYVYDLFAISNHYGGLGGGH 766
K + FV++P +L+L D K + + + E + Y L+ I+ H G L GH
Sbjct: 747 KNNVFVSYPSVLDLTAFWANDYDKKVTNNNVELPSRGQVPPFNYQLYGIACHDGTLRAGH 806
Query: 767 YTAYAKLIDENRWYHFDDSHVSPV-SEGDIKTSAAYVLFYRRVKS 810
YTAY W ++DD++ + S + T AYVLFY R+ S
Sbjct: 807 YTAYVNKGAVLGWCYYDDTNWRQIRSAREYITQNAYVLFYHRIHS 851
>sp|A6ZY34|UBP4_YEAS7 Ubiquitin carboxyl-terminal hydrolase 4 OS=Saccharomyces cerevisiae
(strain YJM789) GN=DOA4 PE=3 SV=1
Length = 926
Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 89/271 (32%), Positives = 136/271 (50%), Gaps = 39/271 (14%)
Query: 144 GISMDSTGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGSTFMDMDDGY 203
++M+S G+ A I+PS L+++ +L + T P SS D+D
Sbjct: 515 NLNMNSNGHSSATSTIQPS--CLSLSNNDSLDHTDVT-------PTSSHN---YDLDFA- 561
Query: 204 DSYNTAKKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGM 262
GL+NLGN+C+MN +QC++ T +L Q FL D Y+ IN + LG
Sbjct: 562 --------------VGLENLGNSCYMNCIIQCILGTHELTQIFLDDSYAKHININSKLGS 607
Query: 263 HGELALAFGDLLRKLWS-----SGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLL 317
G LA F L+ ++ S + +++P FK F +Q D QE FLL
Sbjct: 608 KGILAKYFARLVHMMYKEQVDGSKKISISPIKFKLACGSVNSLFKTASQQDCQEFCQFLL 667
Query: 318 DGLHEDLNRVKQKPYIE--MKDSGGRPDE---EVANEC-WKNHKARNDSLIVDVFQGQYK 371
DGLHEDLN+ P ++ +++ R ++ +A+ W+ + S+IVD+FQGQY
Sbjct: 668 DGLHEDLNQCGSNPPLKELSQEAEARREKLSLRIASSIEWERFLTTDFSVIVDLFQGQYA 727
Query: 372 STLVCPVCSKVSITFDPFMYLTLPLPSTVTR 402
S L C VCS S T+ PF L++P+P +R
Sbjct: 728 SRLKCKVCSHTSTTYQPFTVLSIPIPKKNSR 758
Score = 106 bits (265), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 97/193 (50%), Gaps = 30/193 (15%)
Query: 635 YDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQAT 694
Y P + +P+ KK + I++ C F E L D+ W CP CK+ + +T
Sbjct: 742 YQPFTVLSIPIP-------KKNSRNNITIEDCFREFTKCENLEVDEQWLCPHCKKRQPST 794
Query: 695 KKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSK-DG-------- 745
K+L + LP L+ HLKRF L NK + FV +P L LDL+ + + DG
Sbjct: 795 KQLTITRLPRNLIVHLKRFD---NLLNKNNDFVIYPFL-LDLTPFWANDFDGVFPPGVND 850
Query: 746 ---------ESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPV-SEGDI 795
+ Y+L+ ++ H+G L GGHYTAY K + W +FDD+ PV ++ D
Sbjct: 851 DELPIRGQIPPFKYELYGVACHFGTLYGGHYTAYVKKGLKKGWLYFDDTKYKPVKNKADA 910
Query: 796 KTSAAYVLFYRRV 808
S AYVLFY RV
Sbjct: 911 INSNAYVLFYHRV 923
>sp|P32571|UBP4_YEAST Ubiquitin carboxyl-terminal hydrolase 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DOA4 PE=1 SV=2
Length = 926
Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 89/271 (32%), Positives = 136/271 (50%), Gaps = 39/271 (14%)
Query: 144 GISMDSTGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGSTFMDMDDGY 203
++M+S G+ A I+PS L+++ +L + T P SS D+D
Sbjct: 515 NLNMNSNGHSSATSTIQPS--CLSLSNNDSLDHTDVT-------PTSSHN---YDLDFA- 561
Query: 204 DSYNTAKKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGM 262
GL+NLGN+C+MN +QC++ T +L Q FL D Y+ IN + LG
Sbjct: 562 --------------VGLENLGNSCYMNCIIQCILGTHELTQIFLDDSYAKHININSKLGS 607
Query: 263 HGELALAFGDLLRKLWS-----SGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLL 317
G LA F L+ ++ S + +++P FK F +Q D QE FLL
Sbjct: 608 KGILAKYFARLVHMMYKEQVDGSKKISISPIKFKLACGSVNSLFKTASQQDCQEFCQFLL 667
Query: 318 DGLHEDLNRVKQKPYIE--MKDSGGRPDE---EVANEC-WKNHKARNDSLIVDVFQGQYK 371
DGLHEDLN+ P ++ +++ R ++ +A+ W+ + S+IVD+FQGQY
Sbjct: 668 DGLHEDLNQCGSNPPLKELSQEAEARREKLSLRIASSIEWERFLTTDFSVIVDLFQGQYA 727
Query: 372 STLVCPVCSKVSITFDPFMYLTLPLPSTVTR 402
S L C VCS S T+ PF L++P+P +R
Sbjct: 728 SRLKCKVCSHTSTTYQPFTVLSIPIPKKNSR 758
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 97/193 (50%), Gaps = 30/193 (15%)
Query: 635 YDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQAT 694
Y P + +P+ KK + I++ C F E L D+ W CP C++ + +T
Sbjct: 742 YQPFTVLSIPIP-------KKNSRNNITIEDCFREFTKCENLEVDEQWLCPHCEKRQPST 794
Query: 695 KKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSK-DG-------- 745
K+L + LP L+ HLKRF L NK + FV +P L LDL+ + + DG
Sbjct: 795 KQLTITRLPRNLIVHLKRFD---NLLNKNNDFVIYPFL-LDLTPFWANDFDGVFPPGVND 850
Query: 746 ---------ESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPV-SEGDI 795
+ Y+L+ ++ H+G L GGHYTAY K + W +FDD+ PV ++ D
Sbjct: 851 DELPIRGQIPPFKYELYGVACHFGTLYGGHYTAYVKKGLKKGWLYFDDTKYKPVKNKADA 910
Query: 796 KTSAAYVLFYRRV 808
S AYVLFY RV
Sbjct: 911 INSNAYVLFYHRV 923
>sp|B3LGK1|UBP4_YEAS1 Ubiquitin carboxyl-terminal hydrolase 4 OS=Saccharomyces cerevisiae
(strain RM11-1a) GN=DOA4 PE=3 SV=1
Length = 926
Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/271 (32%), Positives = 135/271 (49%), Gaps = 39/271 (14%)
Query: 144 GISMDSTGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGSTFMDMDDGY 203
++M+S G+ A I+PS L+++ +L + T P SS D+D
Sbjct: 515 NLNMNSNGHSSATSTIQPS--CLSLSNNDSLDHTDVT-------PTSSHN---YDLDFA- 561
Query: 204 DSYNTAKKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGM 262
GL+NLGN+C+MN +QC++ T +L Q FL D Y+ IN + LG
Sbjct: 562 --------------VGLENLGNSCYMNCIIQCILGTHELTQIFLDDSYAKHININSKLGS 607
Query: 263 HGELALAFGDLLRKLWS-----SGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLL 317
G LA F L+ ++ S + ++P FK F +Q D QE FLL
Sbjct: 608 KGILAKYFARLVHMMYKEQVDGSKKIPISPIKFKLACGSVNSLFKTASQQDCQEFCQFLL 667
Query: 318 DGLHEDLNRVKQKPYIE--MKDSGGRPDE---EVANEC-WKNHKARNDSLIVDVFQGQYK 371
DGLHEDLN+ P ++ +++ R ++ +A+ W+ + S+IVD+FQGQY
Sbjct: 668 DGLHEDLNQCGSNPPLKELSQEAEARREKLSLRIASSIEWERFLTTDFSVIVDLFQGQYA 727
Query: 372 STLVCPVCSKVSITFDPFMYLTLPLPSTVTR 402
S L C VCS S T+ PF L++P+P +R
Sbjct: 728 SRLKCKVCSHTSTTYQPFTVLSIPIPKKNSR 758
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 97/193 (50%), Gaps = 30/193 (15%)
Query: 635 YDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQAT 694
Y P + +P+ KK + I++ C F E L D+ W CP C++ + +T
Sbjct: 742 YQPFTVLSIPIP-------KKNSRNNITIEDCFREFTKCENLEVDEQWLCPHCEKRQPST 794
Query: 695 KKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSK-DG-------- 745
K+L + LP L+ HLKRF L NK + FV +P L LDL+ + + DG
Sbjct: 795 KQLTITRLPRNLIVHLKRFD---NLLNKNNDFVIYPFL-LDLTPFWANDFDGVFPPGVND 850
Query: 746 ---------ESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPV-SEGDI 795
+ Y+L+ ++ H+G L GGHYTAY K + W +FDD+ PV ++ D
Sbjct: 851 DELPIRGQIPPFKYELYGVACHFGTLYGGHYTAYVKKGLKKGWLYFDDTKYKPVKNKADA 910
Query: 796 KTSAAYVLFYRRV 808
S AYVLFY RV
Sbjct: 911 INSNAYVLFYHRV 923
>sp|Q9UK80|UBP21_HUMAN Ubiquitin carboxyl-terminal hydrolase 21 OS=Homo sapiens GN=USP21
PE=1 SV=1
Length = 565
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/270 (34%), Positives = 127/270 (47%), Gaps = 32/270 (11%)
Query: 154 LALVPIEPS---RSSLTIAGGPALSNGHTTGYRFNQYPGSSFGSTFMDMDDGYDSYNTAK 210
LAL P P+ +SL GG G T + P +S GS M + + +
Sbjct: 142 LALRPEPPTLRRSTSLRRLGG---FPGPPTLFSIRTEPPASHGSFHMISARSSEPFYSDD 198
Query: 211 KGEK------GGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLG-DYSDEINTENPLGMH 263
K G GL+NLGNTCF+N+ LQCL T L + L D+ E+ G
Sbjct: 199 KMAHHTLLLGSGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGG---GRA 255
Query: 264 GELALAFGDLLRKLWSSGRA-AVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHE 322
EL AF D++ LW AV P F+ ++ P FSGY+Q D+QE L L++ LH
Sbjct: 256 QELTEAFADVIGALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHL 315
Query: 323 DLNRVKQK--------PYIEMKDSGGR-------PDEEVANECWKNHKARNDSLIVDVFQ 367
++NR ++ P GG D++ AN WK + R DS IVD+F
Sbjct: 316 EINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFV 375
Query: 368 GQYKSTLVCPVCSKVSITFDPFMYLTLPLP 397
GQ KS L C C S TF+ F L+LP+P
Sbjct: 376 GQLKSCLKCQACGYRSTTFEVFCDLSLPIP 405
Score = 114 bits (284), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 89/161 (55%), Gaps = 8/161 (4%)
Query: 646 VHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDV 705
+ K GF K +SL C + F EE L ++ C +C++ ++TKKL + P +
Sbjct: 404 IPKKGFAGGK-----VSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRI 458
Query: 706 LVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGG 765
LV HL RFS SR K V+FP+ L L + K G S VY L+A+ NH G + G
Sbjct: 459 LVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKAG-SPVYQLYALCNHSGSVHYG 517
Query: 766 HYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYR 806
HYTA + + W+ ++DS VSPVSE + +S YVLFY+
Sbjct: 518 HYTALCRC--QTGWHVYNDSRVSPVSENQVASSEGYVLFYQ 556
>sp|B2GUX4|UBP21_RAT Ubiquitin carboxyl-terminal hydrolase 21 OS=Rattus norvegicus
GN=Usp21 PE=2 SV=1
Length = 565
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 103/199 (51%), Gaps = 20/199 (10%)
Query: 216 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLG-DYSDEINTENPLGMHGELALAFGDLL 274
G GL+NLGNTCF+N+ LQCL T L + L D+ E+ G EL AF D++
Sbjct: 210 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGG---GRAQELTEAFADVI 266
Query: 275 RKLWSSGRA-AVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQK--- 330
LW AV P F+ ++ P FSGY+Q D+QE L L++ LH ++NR ++
Sbjct: 267 GALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPP 326
Query: 331 -----PYIEMKDSGGR-------PDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPV 378
P GG D++ AN WK + R DS IVD+F GQ KS L C
Sbjct: 327 ILASGPVPSPPRRGGALHEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQA 386
Query: 379 CSKVSITFDPFMYLTLPLP 397
C S TF+ F L+LP+P
Sbjct: 387 CGYRSTTFEVFCDLSLPIP 405
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 88/161 (54%), Gaps = 8/161 (4%)
Query: 646 VHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDV 705
+ K GF K +SL C F EE L ++ C +C++ ++TKKL + P +
Sbjct: 404 IPKKGFAGGK-----VSLRDCFSLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRI 458
Query: 706 LVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGG 765
LV HL RFS SR K V+FP+ L L + K G S VY L+A+ NH G + G
Sbjct: 459 LVLHLNRFSTSRGSIKKSSVGVDFPLQRLSLGDFASDKVG-SPVYQLYALCNHSGSVHYG 517
Query: 766 HYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYR 806
HYTA + + W+ ++DS VSPVSE + +S YVLFY+
Sbjct: 518 HYTALCRC--QTGWHVYNDSRVSPVSENQVASSEGYVLFYQ 556
>sp|Q2KJ72|UBP21_BOVIN Ubiquitin carboxyl-terminal hydrolase 21 OS=Bos taurus GN=USP21
PE=2 SV=1
Length = 565
Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 103/199 (51%), Gaps = 20/199 (10%)
Query: 216 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLG-DYSDEINTENPLGMHGELALAFGDLL 274
G GL+NLGNTCF+N+ LQCL T L + L D+ E+ G EL AF D++
Sbjct: 210 GHVGLRNLGNTCFLNALLQCLSSTRPLRDFCLRRDFRQEVPGG---GRAQELTEAFADVI 266
Query: 275 RKLWSSGRA-AVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRV-KQKPY 332
LW AV P F+ ++ P FSGY+Q D+QE L L++ LH ++NR ++ P
Sbjct: 267 GALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPP 326
Query: 333 IEMKDSGGRP--------------DEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPV 378
I P D++ AN WK + R DS IVD+F GQ KS L C
Sbjct: 327 ILASSPAPHPPRLGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQA 386
Query: 379 CSKVSITFDPFMYLTLPLP 397
C S TF+ F L+LP+P
Sbjct: 387 CGYRSTTFEVFCDLSLPIP 405
Score = 113 bits (283), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 92/168 (54%), Gaps = 8/168 (4%)
Query: 646 VHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDV 705
+ K GF K +SL C + F EE L ++ C +C++ ++TKKL + P +
Sbjct: 404 IPKKGFAGGK-----VSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRI 458
Query: 706 LVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGG 765
LV HL RFS SR K V+FP+ L L + K G S VY L+A+ NH G + G
Sbjct: 459 LVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKAG-SPVYQLYALCNHSGSVHYG 517
Query: 766 HYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRVKSKTK 813
HYTA + + W+ ++DS VSPVSE + +S YVLFY+ ++ +
Sbjct: 518 HYTALCRC--QTGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQEPPR 563
>sp|Q9QZL6|UBP21_MOUSE Ubiquitin carboxyl-terminal hydrolase 21 OS=Mus musculus GN=Usp21
PE=1 SV=1
Length = 566
Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 104/200 (52%), Gaps = 21/200 (10%)
Query: 216 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLG-DYSDEINTENPLGMHGELALAFGDLL 274
G GL+NLGNTCF+N+ LQCL T L + L D+ E+ G EL AF D++
Sbjct: 210 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGG---GRAQELTEAFADVI 266
Query: 275 RKLWSSGRA-AVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQK--- 330
LW AV P F+ ++ P FSGY+Q D+QE L L++ LH ++NR ++
Sbjct: 267 GALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPP 326
Query: 331 -----PYIEMKDSGG-----RP---DEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCP 377
P GG P D++ AN WK + R DS IVD+F GQ KS L C
Sbjct: 327 ILASGPVPSPPRRGGGALHEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQ 386
Query: 378 VCSKVSITFDPFMYLTLPLP 397
C S TF+ F L+LP+P
Sbjct: 387 ACGYRSTTFEVFCDLSLPIP 406
Score = 113 bits (282), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 88/161 (54%), Gaps = 8/161 (4%)
Query: 646 VHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDV 705
+ K GF K +SL C F EE L ++ C +C++ ++TKKL + P +
Sbjct: 405 IPKKGFAGGK-----VSLRDCFSLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRI 459
Query: 706 LVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGG 765
LV HL RFS SR K V+FP+ L L + K G S VY L+A+ NH G + G
Sbjct: 460 LVLHLNRFSTSRGSIKKSSVGVDFPLQRLSLGDFASDKAG-SPVYQLYALCNHSGSVHYG 518
Query: 766 HYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYR 806
HYTA + + W+ ++DS VSPVSE + +S YVLFY+
Sbjct: 519 HYTALCRC--QTGWHVYNDSRVSPVSENQVASSEGYVLFYQ 557
>sp|A7TGY3|UBP4_VANPO Ubiquitin carboxyl-terminal hydrolase 4 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294) GN=DOA4 PE=3
SV=1
Length = 882
Score = 123 bits (309), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 101/195 (51%), Gaps = 15/195 (7%)
Query: 218 AGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRK 276
GL+N+GN+C+MN +QCL+ T +L+Q FL + Y IN + LG G LA F L+
Sbjct: 519 VGLENMGNSCYMNCIIQCLLSTHELSQIFLNNSYEKHINLNSKLGSKGVLAKYFARLVHT 578
Query: 277 LWSSG--------RAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVK 328
++ G + P FK F Q DSQE FLLDGLHEDLN+
Sbjct: 579 MYREGSFKRPLEKNKPIQPIQFKMACGSINSLFKDNTQQDSQEFCQFLLDGLHEDLNQCG 638
Query: 329 QKPYI-EMKDSGGRPDEEVANEC-----WKNHKARNDSLIVDVFQGQYKSTLVCPVCSKV 382
P + E+ + + E+++ W+ + S+IVD+FQGQY S L C VC
Sbjct: 639 ANPPLKELSEDAEKMREKLSMRIASSIEWERFLTTDFSVIVDLFQGQYASQLKCKVCGCT 698
Query: 383 SITFDPFMYLTLPLP 397
S T+ F L++P+P
Sbjct: 699 STTYQTFSVLSVPVP 713
Score = 110 bits (274), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 87/164 (53%), Gaps = 22/164 (13%)
Query: 663 LFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNK 722
+ C + F E LG D++W CP CK+ + +TKKL + LP L+ HLKRF + NK
Sbjct: 720 ILDCFNEFTKVEKLGTDELWSCPTCKKKQPSTKKLTITRLPRNLIIHLKRFD---NMMNK 776
Query: 723 LDTFVNFPILNLDLSKYMKSK-DGE----------------SYVYDLFAISNHYGGLGGG 765
+ FV +P L LDL+ Y + DG + Y L A+++H G L GG
Sbjct: 777 NNVFVKYPFL-LDLTPYWANDFDGRLPPGVTDELPTRGQVPPFRYKLNAVASHVGSLYGG 835
Query: 766 HYTAYAKLIDENRWYHFDDSHVSPV-SEGDIKTSAAYVLFYRRV 808
HYTAY W++FDD+ P+ +E + T AYVLFY RV
Sbjct: 836 HYTAYVNKGINRGWHYFDDTSYRPIKNETECITPNAYVLFYHRV 879
>sp|Q5UQR3|UBPL1_MIMIV Probable ubiquitin carboxyl-terminal hydrolase R319 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_R319 PE=3 SV=1
Length = 468
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 88/156 (56%), Gaps = 5/156 (3%)
Query: 655 KTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFS 714
K E ++++ CL + ++E L D++W C C E QA KK LW P VLV KRF
Sbjct: 308 KNMYEQLNVYDCLREYFSQETLDADNLWNCEGCHEKVQAIKKTKLWTTPYVLVIQFKRFG 367
Query: 715 YSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYV---YDLFAISNHYGGLGGGHYTAYA 771
+R K+ + F+N+P+ LD+S + S+ E V Y L + NH+GGL GHY Y+
Sbjct: 368 MTRIAKD--NRFINYPMDELDVSSVICSQQFEDSVQTKYKLQCVINHHGGLNNGHYFTYS 425
Query: 772 KLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRR 807
K+ + WY F+D++ V++ I AY+LFY R
Sbjct: 426 KIENTGEWYEFNDTYTGKVTDNHIVNQNAYILFYIR 461
Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 98/268 (36%), Gaps = 87/268 (32%)
Query: 216 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD---------------YSD-------- 252
G+ G+ NLGNTC+MNSALQ L H L Y + + D
Sbjct: 40 GITGIMNLGNTCYMNSALQALSHNYLLINYLFMNKKQIIRTLLTNARKIFKDCDNFKIES 99
Query: 253 -----------EINTEN-----------PLGMHGELALAFGDLLRKLWSSGRAAVAPRAF 290
+I +EN + ++ + L +W + V P +F
Sbjct: 100 TISPIPLELRKKIQSENYHLSMLTVEDVNILLNNTITAQIIRLFECMWKNN-CVVVPTSF 158
Query: 291 KGKLARFAPQ-FSGYNQHDSQELLAFLLDGLHEDL----------------------NRV 327
+ + F GY QHD++E + ++ + E+L N V
Sbjct: 159 RKVFGEVRDKFFFGYEQHDAEEAYSCIIQKMQEELAEKRTIRFKTTRHSVGEYIKYMNDV 218
Query: 328 KQK----PYIEMKD---------SGGRPDEEVANECWKNHKARND---SLIVDVFQGQYK 371
K+K P + KD P E + E ++ K + S I ++F G
Sbjct: 219 KEKVSCLPNGKEKDIVMNKFKQIKKQMPRESLTAESFREMKKYYEQGYSYITEIFSGYVH 278
Query: 372 STLVCP--VCSKVSITFDPFMYLTLPLP 397
S++ CP C + FD F +L+L +P
Sbjct: 279 SSICCPNTSCGFTNDRFDAFTHLSLSIP 306
>sp|Q9HFS7|UBP4_KLULA Ubiquitin carboxyl-terminal hydrolase 4 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=DOA4 PE=3 SV=1
Length = 796
Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 106/209 (50%), Gaps = 22/209 (10%)
Query: 219 GLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKL 277
GL NLGN+C++N +QCL+ +L+ FL + Y +N + LG G LA F L++K+
Sbjct: 433 GLVNLGNSCYLNCIIQCLLGCHELSYIFLTNSYRKHVNVNSRLGSKGLLANYFSQLVQKM 492
Query: 278 WSSGR-----------AAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNR 326
+ G+ AV P FK F G Q D QE FLLDGLHEDLN+
Sbjct: 493 YQQGKLQAYNNTNMESTAVHPTQFKLACGSINSLFKGKQQQDCQEFCQFLLDGLHEDLNQ 552
Query: 327 VKQKPYI-EMKDSGGRPDEEVANEC-----WKNHKARNDSLIVDVFQGQYKSTLVCPVCS 380
P + E+ + E + W+ + + S+IVD+FQGQY S L C +C+
Sbjct: 553 CGTNPPLKELSPEAEKMRETMPMRIASAIEWERYLTTDFSVIVDLFQGQYASQLRCKICA 612
Query: 381 KVSITFDPFMYLTLPLPSTVTRTMTVTVF 409
S T+ F L++P+P R + T++
Sbjct: 613 HTSTTYQAFSVLSVPVP----RARSCTIY 637
Score = 103 bits (256), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 94/178 (52%), Gaps = 27/178 (15%)
Query: 651 FTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHL 710
+V R + +++ C F E L D++WYCP CK+ + +TK++ + LP+ L+ HL
Sbjct: 624 LSVPVPRARSCTIYDCFKEFTKLETLEKDELWYCPYCKQRQPSTKQIIITRLPNNLIIHL 683
Query: 711 KRFSYSRYLKNKLDTFVNFPILNLDLSKY--------MKSKDGES---------YVYDLF 753
KRF + NK + FVN+P LDL+ + M +G S + Y LF
Sbjct: 684 KRFD---NMMNKNNVFVNYPN-ELDLTGFWIDDYNGEMPKDNGVSLPLRGQKPPFNYRLF 739
Query: 754 AISNHYGGLGGGHYTAYAKLIDENR--WYHFDDSHVSPVSEGD-IKTSAAYVLFYRRV 808
A+++H G L GGHYT++ +D+ R W FDD + D T AYVLFYRRV
Sbjct: 740 AVASHSGTLYGGHYTSF---VDKGRVGWCSFDDVSWRKIRRKDEYITPNAYVLFYRRV 794
>sp|Q28CN3|UBP33_XENTR Ubiquitin carboxyl-terminal hydrolase 33 OS=Xenopus tropicalis
GN=usp33 PE=2 SV=1
Length = 892
Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 660 AISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYL 719
++L CL AF + L D+M+ C +CK+ R K + P++L HLKRF +
Sbjct: 516 TVTLQDCLAAFFARDELKGDNMYSCEKCKKLRNGVKFCKVQKFPEILCIHLKRFRHELMF 575
Query: 720 KNKLDTFVNFPILNLDLSKYMKSKDGESYV--YDLFAISNHYGGLGGGHYTAYAKLIDEN 777
K+ T V+FP+ LDL ++ +KD S + YDL ++ H+G GHY AY + N
Sbjct: 576 STKIGTHVSFPLEGLDLQPFL-AKDSPSQIVTYDLLSVICHHGTASSGHYIAYCRNNLNN 634
Query: 778 RWYHFDDSHVSPVSEGDIKTSAAYVLFYRRVKSKTKAEMAETS 820
WY FDD V+ VSE ++ + AYVLFYR+ + + E S
Sbjct: 635 LWYEFDDQSVTEVSEATVQNAEAYVLFYRKASEEAQKERRRVS 677
Score = 76.6 bits (187), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 216 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLR 275
GL GL+N+GNTC+MN+ALQ L + P L YFL + P L ++ L+
Sbjct: 146 GLTGLKNIGNTCYMNAALQALSNCPPLTHYFLDCGGLARTDKKPA-----LCKSYQKLMS 200
Query: 276 KLWSSGRAA-VAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDL 324
+W R V P + P F GY+Q D+QE L L+D LHE+L
Sbjct: 201 DIWHKNRPGFVIPTNLFQGIKSVNPTFRGYSQQDAQEFLRCLMDVLHEEL 250
Score = 41.6 bits (96), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 352 KNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLP 397
K + + S+I D+F G S++ C C +VS+T + F L+LP+P
Sbjct: 423 KRKQKKYHSVIADIFDGTIVSSVQCLTCDRVSVTLETFQDLSLPIP 468
>sp|Q8R5K2|UBP33_MOUSE Ubiquitin carboxyl-terminal hydrolase 33 OS=Mus musculus GN=Usp33
PE=1 SV=2
Length = 909
Score = 120 bits (301), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 86/162 (53%), Gaps = 1/162 (0%)
Query: 660 AISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYL 719
++L CL AF + L D+M+ C +CK+ R K + P++L HLKRF +
Sbjct: 533 VVTLQDCLAAFFARDELKGDNMYSCEKCKKLRNGVKFCKVQKFPEILCIHLKRFRHELMF 592
Query: 720 KNKLDTFVNFPILNLDLSKYM-KSKDGESYVYDLFAISNHYGGLGGGHYTAYAKLIDENR 778
K+ T V+FP+ LDL ++ K + YDL ++ H+G GHY AY + N
Sbjct: 593 STKISTHVSFPLEGLDLQPFLAKDSPAQIVTYDLLSVICHHGTASSGHYIAYCRNNLNNL 652
Query: 779 WYHFDDSHVSPVSEGDIKTSAAYVLFYRRVKSKTKAEMAETS 820
WY FDD V+ VSE ++ + AYVLFYR+ + + E S
Sbjct: 653 WYEFDDQSVTEVSESTVQNAEAYVLFYRKSSEEAQKERRRIS 694
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 76/145 (52%), Gaps = 13/145 (8%)
Query: 216 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLR 275
GL GL+N+GNTC+MN+ALQ L + P L Q+FL + P + ++ L+
Sbjct: 152 GLTGLKNIGNTCYMNAALQALSNCPPLTQFFLDCGGLARTDKKPA-----ICKSYLKLMT 206
Query: 276 KLWSSGR-AAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIE 334
+LW R +V P + P F GY+Q D+QE L L+D LHE+L ++ +E
Sbjct: 207 ELWHKSRPGSVVPANLFQGIKTVNPTFRGYSQQDAQEFLRCLMDLLHEEL----KEQVME 262
Query: 335 MKDSGGRPDEEVANECWKNHKARND 359
M++ P + E + K+++D
Sbjct: 263 MEE---EPQTLTSEETVEEEKSQSD 284
Score = 41.2 bits (95), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 352 KNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLP 397
K HK + S+I D+F G S++ C C +VSIT + F L+LP+P
Sbjct: 434 KQHK-KYRSVISDIFDGTVISSVQCLTCDRVSITLETFQDLSLPIP 478
>sp|Q5REG5|UBP33_PONAB Ubiquitin carboxyl-terminal hydrolase 33 OS=Pongo abelii GN=USP33
PE=2 SV=1
Length = 914
Score = 120 bits (300), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 86/162 (53%), Gaps = 1/162 (0%)
Query: 660 AISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYL 719
++L CL AF + L D+M+ C +CK+ R K + P++L HLKRF +
Sbjct: 534 VVTLQDCLAAFFARDELKGDNMYSCEKCKKLRNGVKFCKVQKFPEILCIHLKRFRHELMF 593
Query: 720 KNKLDTFVNFPILNLDLSKYM-KSKDGESYVYDLFAISNHYGGLGGGHYTAYAKLIDENR 778
K+ T V+FP+ LDL ++ K + YDL ++ H+G GHY AY + N
Sbjct: 594 STKISTHVSFPLEGLDLQPFLAKDSPAQIVTYDLLSVICHHGTASSGHYIAYCRNNLNNL 653
Query: 779 WYHFDDSHVSPVSEGDIKTSAAYVLFYRRVKSKTKAEMAETS 820
WY FDD V+ VSE ++ + AYVLFYR+ + + E S
Sbjct: 654 WYEFDDQSVTEVSESTVQNAEAYVLFYRKSSEEAQKERRRIS 695
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 68/132 (51%), Gaps = 9/132 (6%)
Query: 194 STFMDMDDGYDSYNTAKKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDE 253
+ F D+D D + + GL GL+N+GNTC+MN+ALQ L + P L Q+FL
Sbjct: 133 AVFDDLDIEVDEEDELRAR---GLTGLKNIGNTCYMNAALQALSNCPPLTQFFLDCGGLA 189
Query: 254 INTENPLGMHGELALAFGDLLRKLWSSGR-AAVAPRAFKGKLARFAPQFSGYNQHDSQEL 312
+ P + ++ L+ +LW R +V P + P F GY+Q D+QE
Sbjct: 190 RTDKKPA-----ICKSYLKLMTELWHKSRPGSVVPTNLFQGIKTVNPTFRGYSQQDAQEF 244
Query: 313 LAFLLDGLHEDL 324
L L+D LHE+L
Sbjct: 245 LRCLMDLLHEEL 256
Score = 40.4 bits (93), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 352 KNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLP 397
K HK + S+I D+F G S++ C C +VS+T + F L+LP+P
Sbjct: 434 KQHK-KYRSVISDIFDGTIISSVQCLTCDRVSVTLETFQDLSLPIP 478
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 319,766,802
Number of Sequences: 539616
Number of extensions: 14249822
Number of successful extensions: 34956
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 33622
Number of HSP's gapped (non-prelim): 738
length of query: 825
length of database: 191,569,459
effective HSP length: 126
effective length of query: 699
effective length of database: 123,577,843
effective search space: 86380912257
effective search space used: 86380912257
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)