Query 003370
Match_columns 825
No_of_seqs 405 out of 2004
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 22:13:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003370.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003370hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5560 UBP12 Ubiquitin C-term 100.0 5E-115 1E-119 946.1 36.4 704 3-809 95-823 (823)
2 KOG1870 Ubiquitin C-terminal h 100.0 3.4E-95 7E-100 875.1 38.3 750 3-809 75-842 (842)
3 COG5533 UBP5 Ubiquitin C-termi 100.0 3.4E-65 7.4E-70 516.3 21.5 334 214-808 68-414 (415)
4 KOG1865 Ubiquitin carboxyl-ter 100.0 1.3E-64 2.8E-69 554.2 22.9 305 213-808 104-410 (545)
5 cd02663 Peptidase_C19G A subfa 100.0 2.3E-63 5E-68 541.0 27.1 287 219-806 1-300 (300)
6 cd02668 Peptidase_C19L A subfa 100.0 6.3E-61 1.4E-65 527.5 30.2 295 219-806 1-324 (324)
7 cd02671 Peptidase_C19O A subfa 100.0 1.4E-60 3E-65 523.1 29.7 299 211-806 18-332 (332)
8 cd02660 Peptidase_C19D A subfa 100.0 2.4E-60 5.1E-65 524.1 30.8 317 218-806 1-328 (328)
9 cd02667 Peptidase_C19K A subfa 100.0 1.9E-60 4E-65 512.7 24.8 252 219-806 1-279 (279)
10 cd02669 Peptidase_C19M A subfa 100.0 3.5E-60 7.6E-65 539.7 26.1 304 213-806 115-440 (440)
11 KOG1868 Ubiquitin C-terminal h 100.0 8.5E-61 1.9E-65 548.3 17.0 344 212-811 296-649 (653)
12 cd02664 Peptidase_C19H A subfa 100.0 1.8E-59 3.9E-64 516.0 26.0 277 219-806 1-327 (327)
13 cd02658 Peptidase_C19B A subfa 100.0 3.7E-58 8E-63 503.0 30.2 293 219-806 1-311 (311)
14 cd02657 Peptidase_C19A A subfa 100.0 3.5E-58 7.5E-63 501.8 28.0 288 219-806 1-305 (305)
15 cd02661 Peptidase_C19E A subfa 100.0 2.2E-57 4.8E-62 494.5 28.0 301 217-805 1-303 (304)
16 cd02659 peptidase_C19C A subfa 100.0 5.7E-57 1.2E-61 498.4 28.7 298 216-809 1-333 (334)
17 cd02662 Peptidase_C19F A subfa 100.0 3.4E-52 7.3E-57 438.5 23.0 123 661-806 96-240 (240)
18 KOG1873 Ubiquitin-specific pro 100.0 5.5E-51 1.2E-55 453.3 9.1 150 658-808 675-877 (877)
19 cd02674 Peptidase_C19R A subfa 100.0 2.6E-49 5.7E-54 413.9 20.4 146 661-806 84-230 (230)
20 cd02673 Peptidase_C19Q A subfa 100.0 1.5E-46 3.2E-51 394.4 20.0 130 662-806 111-245 (245)
21 KOG1867 Ubiquitin-specific pro 100.0 1.2E-46 2.6E-51 425.5 17.3 324 212-811 156-487 (492)
22 cd02665 Peptidase_C19I A subfa 100.0 3.7E-46 8E-51 384.2 17.6 127 662-806 94-228 (228)
23 PF00443 UCH: Ubiquitin carbox 100.0 1.9E-45 4.2E-50 390.4 22.6 258 217-805 1-269 (269)
24 cd02666 Peptidase_C19J A subfa 100.0 7.3E-45 1.6E-49 398.3 17.5 290 217-806 1-343 (343)
25 KOG0944 Ubiquitin-specific pro 100.0 3.4E-44 7.4E-49 396.0 21.2 300 212-808 302-762 (763)
26 KOG1866 Ubiquitin carboxyl-ter 100.0 8.2E-46 1.8E-50 410.4 4.4 308 212-814 90-440 (944)
27 cd02257 Peptidase_C19 Peptidas 100.0 8.4E-41 1.8E-45 350.0 21.9 142 661-806 99-255 (255)
28 COG5077 Ubiquitin carboxyl-ter 100.0 1.9E-42 4E-47 383.8 6.5 300 212-812 188-515 (1089)
29 cd02672 Peptidase_C19P A subfa 100.0 1.9E-41 4.2E-46 360.3 14.0 136 661-806 117-268 (268)
30 KOG4598 Putative ubiquitin-spe 100.0 1.7E-41 3.7E-46 371.7 3.9 150 662-812 215-445 (1203)
31 COG5207 UBP14 Isopeptidase T [ 100.0 1.1E-37 2.4E-42 333.2 17.6 146 217-395 303-453 (749)
32 KOG1863 Ubiquitin carboxyl-ter 100.0 9.6E-37 2.1E-41 376.9 12.7 304 212-813 164-490 (1093)
33 cd02670 Peptidase_C19N A subfa 100.0 4.7E-35 1E-39 304.3 15.5 123 660-806 79-241 (241)
34 KOG1864 Ubiquitin-specific pro 100.0 4E-34 8.6E-39 328.4 14.9 331 214-809 229-573 (587)
35 PF13423 UCH_1: Ubiquitin carb 100.0 1.6E-30 3.4E-35 282.5 23.6 284 218-787 1-295 (295)
36 KOG1871 Ubiquitin-specific pro 100.0 2.1E-29 4.5E-34 265.1 11.8 142 663-809 267-420 (420)
37 KOG2026 Spindle pole body prot 100.0 5.4E-29 1.2E-33 260.6 14.5 303 212-808 129-441 (442)
38 KOG1872 Ubiquitin-specific pro 99.9 4.5E-27 9.7E-32 254.0 5.6 153 214-394 102-262 (473)
39 KOG1275 PAB-dependent poly(A) 99.5 7.8E-14 1.7E-18 160.1 15.4 123 682-805 702-860 (1118)
40 PF14836 Ubiquitin_3: Ubiquiti 99.5 8.1E-14 1.8E-18 119.9 6.5 82 62-145 1-86 (88)
41 PF14533 USP7_C2: Ubiquitin-sp 98.1 4.1E-05 8.9E-10 79.1 12.7 143 388-543 2-156 (213)
42 PF15499 Peptidase_C98: Ubiqui 97.3 0.002 4.2E-08 66.5 11.0 82 682-786 171-252 (275)
43 KOG1864 Ubiquitin-specific pro 96.9 0.001 2.2E-08 78.1 5.1 105 220-325 34-153 (587)
44 smart00695 DUSP Domain in ubiq 96.9 0.00064 1.4E-08 59.7 2.6 28 3-47 57-85 (86)
45 cd01796 DDI1_N DNA damage indu 95.8 0.037 7.9E-07 46.7 7.3 62 70-137 8-69 (71)
46 PTZ00044 ubiquitin; Provisiona 95.7 0.053 1.2E-06 46.2 7.9 65 70-141 9-73 (76)
47 PF14560 Ubiquitin_2: Ubiquiti 95.5 0.053 1.1E-06 47.7 7.5 66 73-138 15-81 (87)
48 cd01789 Alp11_N Ubiquitin-like 95.0 0.087 1.9E-06 46.0 7.2 65 74-138 15-79 (84)
49 cd01806 Nedd8 Nebb8-like ubiq 94.7 0.18 3.9E-06 42.7 8.3 64 71-141 10-73 (76)
50 cd01807 GDX_N ubiquitin-like d 94.6 0.13 2.8E-06 43.6 7.1 63 70-139 9-71 (74)
51 cd01812 BAG1_N Ubiquitin-like 94.4 0.15 3.3E-06 42.6 7.0 61 71-138 9-69 (71)
52 cd01803 Ubiquitin Ubiquitin. U 94.4 0.2 4.4E-06 42.4 7.8 65 71-142 10-74 (76)
53 cd01810 ISG15_repeat2 ISG15 ub 94.2 0.28 6E-06 41.7 8.2 66 69-141 6-71 (74)
54 cd01763 Sumo Small ubiquitin-r 94.1 0.36 7.9E-06 42.4 9.0 63 71-140 21-83 (87)
55 cd01799 Hoil1_N Ubiquitin-like 93.9 0.25 5.3E-06 42.2 7.2 58 73-137 14-72 (75)
56 cd01794 DC_UbP_C dendritic cel 93.5 0.31 6.6E-06 41.0 7.1 60 70-136 7-66 (70)
57 cd01798 parkin_N amino-termina 93.5 0.32 6.8E-06 40.8 7.1 60 70-136 7-66 (70)
58 cd01808 hPLIC_N Ubiquitin-like 93.1 0.43 9.4E-06 40.1 7.4 57 74-137 12-68 (71)
59 cd01802 AN1_N ubiquitin-like d 93.0 0.48 1E-05 43.1 8.0 65 71-142 37-101 (103)
60 cd01795 USP48_C USP ubiquitin- 93.0 0.33 7.2E-06 43.1 6.6 63 73-141 16-78 (107)
61 PF00240 ubiquitin: Ubiquitin 92.9 0.28 6.1E-06 40.7 6.1 60 73-139 7-66 (69)
62 cd01793 Fubi Fubi ubiquitin-li 92.7 0.68 1.5E-05 39.2 8.2 62 72-140 9-70 (74)
63 cd01809 Scythe_N Ubiquitin-lik 92.6 0.48 1.1E-05 39.5 7.1 61 70-137 9-69 (72)
64 cd01804 midnolin_N Ubiquitin-l 92.4 0.64 1.4E-05 40.0 7.7 58 72-137 12-69 (78)
65 PF00789 UBX: UBX domain; Int 92.2 0.35 7.5E-06 41.9 5.9 67 68-138 13-81 (82)
66 smart00166 UBX Domain present 92.1 0.97 2.1E-05 39.0 8.5 67 68-138 11-79 (80)
67 cd01792 ISG15_repeat1 ISG15 ub 91.8 0.82 1.8E-05 39.4 7.6 64 72-140 13-76 (80)
68 cd01805 RAD23_N Ubiquitin-like 91.5 1.1 2.4E-05 38.0 8.2 62 72-140 11-74 (77)
69 cd01797 NIRF_N amino-terminal 91.5 0.86 1.9E-05 39.2 7.4 61 75-142 15-76 (78)
70 cd01791 Ubl5 UBL5 ubiquitin-li 91.2 1.1 2.4E-05 38.0 7.7 60 72-138 12-71 (73)
71 PF11976 Rad60-SLD: Ubiquitin- 90.8 0.71 1.5E-05 38.7 6.2 58 71-135 10-68 (72)
72 cd01800 SF3a120_C Ubiquitin-li 90.8 1 2.2E-05 38.5 7.2 61 74-141 10-70 (76)
73 PF11543 UN_NPL4: Nuclear pore 90.2 0.48 1E-05 41.0 4.6 64 73-138 15-78 (80)
74 cd01774 Faf1_like2_UBX Faf1 ik 90.2 1.8 3.8E-05 38.0 8.2 69 68-138 11-83 (85)
75 smart00213 UBQ Ubiquitin homol 90.2 1 2.2E-05 36.4 6.4 54 72-132 10-63 (64)
76 cd01767 UBX UBX (ubiquitin reg 90.1 2 4.3E-05 36.7 8.4 66 68-138 9-75 (77)
77 cd01771 Faf1_UBX Faf1 UBX doma 89.9 1.7 3.7E-05 37.6 7.8 69 68-139 11-79 (80)
78 cd01769 UBL Ubiquitin-like dom 89.0 1.7 3.7E-05 35.5 7.1 58 73-137 9-66 (69)
79 cd01773 Faf1_like1_UBX Faf1 ik 87.9 3.7 8.1E-05 35.7 8.4 71 67-140 11-81 (82)
80 cd01813 UBP_N UBP ubiquitin pr 85.6 3.5 7.6E-05 35.0 7.1 62 72-137 10-71 (74)
81 PF05408 Peptidase_C28: Foot-a 84.6 0.52 1.1E-05 46.5 1.7 26 213-238 29-54 (193)
82 cd01772 SAKS1_UBX SAKS1-like U 83.1 5.5 0.00012 34.3 7.3 66 68-138 11-78 (79)
83 cd01770 p47_UBX p47-like ubiqu 81.7 8.9 0.00019 33.0 8.0 60 68-131 11-71 (79)
84 PF06337 DUSP: DUSP domain; I 80.0 0.61 1.3E-05 41.8 0.3 15 33-47 85-99 (99)
85 TIGR00601 rad23 UV excision re 77.3 6.2 0.00013 44.4 7.2 64 71-141 10-76 (378)
86 cd01760 RBD Ubiquitin-like dom 77.2 11 0.00025 31.8 7.1 66 68-139 6-71 (72)
87 PF05408 Peptidase_C28: Foot-a 76.4 2.3 5E-05 42.1 3.0 49 757-812 129-179 (193)
88 PF02196 RBD: Raf-like Ras-bin 75.2 12 0.00025 31.6 6.7 64 68-139 7-70 (71)
89 PLN02560 enoyl-CoA reductase 74.7 11 0.00025 41.2 8.2 61 75-137 17-80 (308)
90 cd06406 PB1_P67 A PB1 domain i 72.4 21 0.00045 30.9 7.4 53 73-127 12-64 (80)
91 COG3478 Predicted nucleic-acid 71.3 3.4 7.4E-05 33.6 2.3 37 679-715 2-40 (68)
92 cd01817 RGS12_RBD Ubiquitin do 71.2 20 0.00044 30.3 7.0 65 68-140 6-70 (73)
93 PF14560 Ubiquitin_2: Ubiquiti 69.9 36 0.00077 29.7 8.8 64 418-481 14-80 (87)
94 KOG0010 Ubiquitin-like protein 69.4 11 0.00024 43.1 6.7 62 72-140 25-88 (493)
95 KOG1870 Ubiquitin C-terminal h 68.4 3 6.5E-05 52.1 2.3 120 660-791 481-600 (842)
96 cd01815 BMSC_UbP_N Ubiquitin-l 66.9 13 0.00028 31.7 5.1 51 80-137 19-72 (75)
97 PF08817 YukD: WXG100 protein 64.2 10 0.00022 32.6 4.1 71 64-137 4-78 (79)
98 cd01801 Tsc13_N Ubiquitin-like 63.6 21 0.00045 30.4 5.9 54 79-137 20-74 (77)
99 smart00455 RBD Raf-like Ras-bi 60.3 37 0.0008 28.5 6.7 64 68-139 6-69 (70)
100 PF08715 Viral_protease: Papai 58.6 24 0.00052 38.8 6.7 80 214-322 99-179 (320)
101 PF14533 USP7_C2: Ubiquitin-sp 56.2 24 0.00052 36.5 6.0 62 73-138 35-99 (213)
102 PF11470 TUG-UBL1: GLUT4 regul 55.7 19 0.00041 29.8 4.1 60 69-135 4-63 (65)
103 cd01768 RA RA (Ras-associating 54.9 62 0.0013 27.9 7.6 52 419-470 14-67 (87)
104 cd01788 ElonginB Ubiquitin-lik 53.3 62 0.0013 29.9 7.2 59 76-141 16-81 (119)
105 PF12436 USP7_ICP0_bdg: ICP0-b 52.3 16 0.00034 38.8 4.0 64 75-140 88-152 (249)
106 PF01473 CW_binding_1: Putativ 52.0 9.5 0.00021 23.3 1.3 15 769-785 2-16 (19)
107 cd01816 Raf_RBD Ubiquitin doma 51.7 1E+02 0.0022 26.2 7.7 68 68-139 6-73 (74)
108 KOG1769 Ubiquitin-like protein 50.6 78 0.0017 28.5 7.3 59 70-135 29-87 (99)
109 cd00196 UBQ Ubiquitin-like pro 49.2 56 0.0012 24.6 6.0 60 71-137 7-66 (69)
110 cd01804 midnolin_N Ubiquitin-l 47.8 54 0.0012 28.0 5.9 67 404-480 2-68 (78)
111 PF12436 USP7_ICP0_bdg: ICP0-b 47.1 46 0.00099 35.4 6.5 55 72-126 190-247 (249)
112 cd01791 Ubl5 UBL5 ubiquitin-li 45.6 81 0.0018 26.6 6.5 58 419-482 13-71 (73)
113 cd01790 Herp_N Homocysteine-re 44.0 90 0.002 27.0 6.6 51 75-132 17-71 (79)
114 KOG4495 RNA polymerase II tran 43.4 37 0.00081 30.1 4.1 52 75-131 15-66 (110)
115 smart00314 RA Ras association 42.4 1.4E+02 0.003 26.0 7.8 52 419-470 17-69 (90)
116 PF00788 RA: Ras association ( 42.2 73 0.0016 27.5 6.1 60 62-121 4-68 (93)
117 PF09379 FERM_N: FERM N-termin 41.7 1.1E+02 0.0023 25.8 6.9 60 69-130 4-65 (80)
118 cd01777 SNX27_RA Ubiquitin dom 41.7 40 0.00088 29.6 4.1 41 61-102 2-42 (87)
119 PF00770 Peptidase_C5: Adenovi 38.7 43 0.00094 33.1 4.2 32 753-784 21-53 (183)
120 KOG1887 Ubiquitin carboxyl-ter 37.7 15 0.00033 44.4 1.2 105 697-809 676-791 (806)
121 cd01768 RA RA (Ras-associating 35.5 1.3E+02 0.0028 25.9 6.5 54 71-124 12-67 (87)
122 PF00788 RA: Ras association ( 33.8 2.6E+02 0.0057 23.9 8.3 65 406-470 5-71 (93)
123 smart00295 B41 Band 4.1 homolo 32.6 2.9E+02 0.0063 27.6 9.6 68 60-129 3-71 (207)
124 cd01789 Alp11_N Ubiquitin-like 32.5 1.6E+02 0.0034 25.5 6.5 31 420-450 15-45 (84)
125 PF13019 Telomere_Sde2: Telome 32.5 2E+02 0.0044 28.4 7.7 55 405-459 2-56 (162)
126 cd01805 RAD23_N Ubiquitin-like 31.3 2.1E+02 0.0045 23.8 7.0 31 419-449 12-44 (77)
127 PF04110 APG12: Ubiquitin-like 30.9 1.2E+02 0.0025 26.8 5.3 62 73-140 17-81 (87)
128 PF09855 DUF2082: Nucleic-acid 30.3 37 0.00081 28.1 2.0 34 682-715 1-36 (64)
129 KOG1871 Ubiquitin-specific pro 29.6 22 0.00049 39.5 0.8 112 214-326 175-316 (420)
130 KOG3556 Familial cylindromatos 29.1 12 0.00027 42.6 -1.3 106 697-806 516-716 (724)
131 KOG1867 Ubiquitin-specific pro 27.8 22 0.00047 41.6 0.3 107 214-321 74-181 (492)
132 cd01792 ISG15_repeat1 ISG15 ub 27.7 2.1E+02 0.0046 24.3 6.4 49 405-458 4-52 (80)
133 cd01814 NTGP5 Ubiquitin-like N 27.0 2.1E+02 0.0045 26.6 6.3 54 69-129 12-73 (113)
134 cd01806 Nedd8 Nebb8-like ubiq 26.1 1.5E+02 0.0033 24.4 5.2 41 406-450 3-43 (76)
135 cd01813 UBP_N UBP ubiquitin pr 25.3 1.4E+02 0.003 25.3 4.7 34 419-452 11-44 (74)
136 cd01818 TIAM1_RBD Ubiquitin do 25.3 1.6E+02 0.0036 25.2 4.9 43 68-110 6-50 (77)
137 cd01782 AF6_RA_repeat1 Ubiquit 25.2 2.7E+02 0.0058 25.6 6.5 76 394-469 11-91 (112)
138 PF02017 CIDE-N: CIDE-N domain 24.6 2.5E+02 0.0055 24.2 6.1 44 62-108 4-47 (78)
139 cd01779 Myosin_IXb_RA ubitquit 23.8 2.8E+02 0.0061 24.8 6.2 52 407-458 14-65 (105)
140 PF00240 ubiquitin: Ubiquitin 23.8 1.1E+02 0.0024 24.8 3.9 33 419-451 7-39 (69)
141 cd01769 UBL Ubiquitin-like dom 23.2 1.9E+02 0.0042 23.0 5.2 29 420-448 10-38 (69)
142 cd01799 Hoil1_N Ubiquitin-like 23.2 2E+02 0.0042 24.4 5.3 32 419-450 14-45 (75)
143 cd01803 Ubiquitin Ubiquitin. U 22.9 1.6E+02 0.0035 24.3 4.7 29 420-448 13-41 (76)
144 COG5227 SMT3 Ubiquitin-like pr 22.7 2.5E+02 0.0054 24.8 5.6 58 69-133 32-89 (103)
145 smart00666 PB1 PB1 domain. Pho 21.4 2.5E+02 0.0054 23.7 5.7 42 62-105 3-44 (81)
146 cd01802 AN1_N ubiquitin-like d 21.4 3.1E+02 0.0067 24.8 6.5 58 387-450 13-70 (103)
147 cd01811 OASL_repeat1 2'-5' oli 20.9 4.2E+02 0.0092 22.7 6.4 63 73-138 12-75 (80)
148 cd01807 GDX_N ubiquitin-like d 20.8 2E+02 0.0043 24.0 4.8 31 420-450 13-43 (74)
No 1
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-115 Score=946.10 Aligned_cols=704 Identities=34% Similarity=0.567 Sum_probs=529.2
Q ss_pred EEEEehHHHHHHHHhccCceeeeeccCCCccccccCCCeeeeEeecCCCCceeEEEcccceEEeeccCC---------Cc
Q 003370 3 MVVVKAMIWKCVEIWKKGRTMFWYLSKSGKSFFVGGPALPRKMISEGIVNEKRVEVFXLCLKLIDSRDN---------SQ 73 (825)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~y~ggp~I~R~Vi~~~~~~~~~VEvyP~~l~l~~~~~~---------~~ 73 (825)
+-.|.++.|+.| +.|||+. |+.++|.++--+......||+||+.|+|+.+..- ..
T Consensus 95 ysiis~~vw~ll--------vrwyGl~--------gl~~pr~tvll~ses~p~ve~yp~~f~lh~Lf~ing~~~n~gh~p 158 (823)
T COG5560 95 YSIISGAVWQLL--------VRWYGLA--------GLITPRITVLLPSESAPEVESYPVVFKLHWLFSINGSLINLGHDP 158 (823)
T ss_pred eeeechHHHHHH--------HHHhccc--------ccceeeEEeccccccCCccccccceEEEEEEEeccchhhhcCCCc
Confidence 456889999999 9999998 4788898877665444489999999999987552 12
Q ss_pred eEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHH-HHhccCCCe----EEEEEEecCceecc
Q 003370 74 TVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLD-DAMLQMDQD----ILLEVQVDNGISMD 148 (825)
Q Consensus 74 ~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~-~~~~~~~~~----~~~E~~~~~~~~~~ 148 (825)
..+.+|+..|+.+|.+++..+|-++.+++|||++..++-. .-+.+...-+. .+....++. ..+|+-.+.+
T Consensus 159 ~~~s~ss~~tlrdl~e~vmnaf~~psD~FRLw~v~~~~~~-~r~~~~s~f~~~~~~a~~~~~l~~~t~~el~~d~s---- 233 (823)
T COG5560 159 VPHSASSHGTLRDLSERVMNAFVDPSDDFRLWDVVPEIMG-LRLGLDSFFRRYRVLASDGRVLHPLTRLELFEDRS---- 233 (823)
T ss_pred ceeeccccchHHHHHHHHHHHhcCcccceeEEEecCCccc-ccccCHHHHhhcchhccchhhhcccHHHHhccchh----
Confidence 3678999999999999999999999999999998765543 11111100000 000011111 1111111111
Q ss_pred CCCCCCcccccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCCCCcCCCCCCCCCccccccCCCCcccceecCCCchh
Q 003370 149 STGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGSTFMDMDDGYDSYNTAKKGEKGGLAGLQNLGNTCF 228 (825)
Q Consensus 149 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCY 228 (825)
..-++ ....|+.- ...+ .. .+.++.. .+.-|.+||.|+|||||
T Consensus 234 ----------------~lll~--kit~np~w-----------lvds-i~-~~~n~si------nke~GtcGL~NlGNTCy 276 (823)
T COG5560 234 ----------------VLLLS--KITRNPDW-----------LVDS-IV-DDHNRSI------NKEAGTCGLRNLGNTCY 276 (823)
T ss_pred ----------------hhHHh--hhccCCcc-----------ceee-ec-chhhhhH------HhhccccceecCCccee
Confidence 00000 00011110 0000 00 0111111 02249999999999999
Q ss_pred HHHHHHHHhCChHHHHHHHhc-CccccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHHHHhhhCCCCCCCCCC
Q 003370 229 MNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQH 307 (825)
Q Consensus 229 mNSvLQ~L~~~p~f~~~~l~~-~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l~~~~~~F~~~~Qq 307 (825)
|||+||||.|++.||+||++. |.+.+|..||+|+.|.+|.+|+.|+++++.+...+++|..|+..|+.++..|+||.||
T Consensus 277 MNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~haf~Ps~fK~tIG~fn~~fsGy~QQ 356 (823)
T COG5560 277 MNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKTIGSFNEEFSGYDQQ 356 (823)
T ss_pred cchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccccccChHHHHHHHhhhHHHhcCccch
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCC---hHHHHHHHHhhccccCCCcccccceEEEEEEEEcCCCCCeee
Q 003370 308 DSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRP---DEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSI 384 (825)
Q Consensus 308 DA~Efl~~LLd~L~eel~~~~~~~~~~~~d~~~~~---~~~~a~~~w~~~~~~~~SiI~~lF~G~~~s~i~C~~C~~~S~ 384 (825)
|+|||+.+|||+|||+|||+.+|||.+.+|..... ....|+++|..|+.||+|||+|+|+|.++|+++|+.|+.+|+
T Consensus 357 DSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLFqgmyKSTL~Cp~C~~vsi 436 (823)
T COG5560 357 DSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVSI 436 (823)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhceeeccCcCceee
Confidence 99999999999999999999999999887654333 356799999999999999999999999999999999999999
Q ss_pred eecCCeeEEEeCCCCceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeEEEeecceeeEeec
Q 003370 385 TFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFE 464 (825)
Q Consensus 385 ~~e~F~~LsLpip~~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~k~~~ 464 (825)
+||||++|+||||.+..|..+|++||.+|...| +.+.+.+.+++.+|++.+....|+-.--.+.+.++|-+++++.+.
T Consensus 437 tfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~p--l~iel~~sSt~~~lk~lv~~~~gk~gc~ei~v~~iy~g~~y~~l~ 514 (823)
T COG5560 437 TFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQP--LKIELDASSTIRGLKKLVDAEYGKLGCFEIKVMCIYYGGNYNMLE 514 (823)
T ss_pred eecchhhccccCchhhcccccEEEECCCCCCCc--eEEEEeccchHHHHHHHHHHHhccCCccceeEEEEEeccchhhcc
Confidence 999999999999999999999999999998777 677888889999999888877776666688999999999999999
Q ss_pred Ccccc-cccccCCCcEEEEEeccCCCCceeEEEeeecccccccccccCCcceeccccEE-EEecCCCCCHHHHHHHHHHH
Q 003370 465 NPAEL-ISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLV-TYLEEEHLSGADIDIAVSKL 542 (825)
Q Consensus 465 d~~~~-~~~i~~~d~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~-~~~~~~~~~~~~l~~~v~~~ 542 (825)
..++. +..|.+.|++|.|+ ..++...++++|-+.+.. ..+..+||.|++ ..+.....-..+|.+.+.+.
T Consensus 515 ~~dk~ll~~I~~~d~vylYe---~~~ngi~vpvvh~~~~~g------Yks~rlFg~pflqlnv~~~~~i~~kLvkE~~el 585 (823)
T COG5560 515 PADKVLLQDIPQTDFVYLYE---TNDNGIEVPVVHLRIEKG------YKSKRLFGDPFLQLNVLIKASIYDKLVKEFEEL 585 (823)
T ss_pred hhhHHHHhhcCccceEEEee---cCCCCeEEEEEecccccc------ccchhhhCCcceEEEeecchhhHHHHHHHHHHH
Confidence 77774 56799999999999 555668899999865543 456789999963 33333333333332222222
Q ss_pred ccccccc-cccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeEEEEecCCCCccCCCccCCCC-CCCCc
Q 003370 543 LSPLRRT-YSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSIL-KPGKH 620 (825)
Q Consensus 543 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 620 (825)
+...... ...+..+.. --. .+. +.......+++...+ .+..+ ...++.. ..+..
T Consensus 586 l~~v~~k~tdvd~~~~q---~~l-----~r~--es~p~~wl~l~teid-------------~kree-~veeE~~~n~nd~ 641 (823)
T COG5560 586 LVLVEMKKTDVDLVSEQ---VRL-----LRE--ESSPSSWLKLETEID-------------TKREE-QVEEEGQMNFNDA 641 (823)
T ss_pred HHHHhhcchhhhhhhhh---ccc-----hhc--ccCcchhhhhhhhcc-------------chhhh-hhhhhhccCCCcc
Confidence 1111100 000000000 000 000 000000000000000 00000 0001111 23456
Q ss_pred eEEEEEecCccccc-cC--ccccccCccccccccccccccCCCCCHHHHHHhhcCCcccCCCCCCCCccccccceEEEEE
Q 003370 621 IKVLLDWTDDVHEL-YD--PSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKL 697 (825)
Q Consensus 621 ~~i~i~w~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~w~C~~Ck~~~~A~Kk~ 697 (825)
+.+.+.|.+..+.. |. ..... -+.+ ...+.+||+|||+.|.++|+|+..|.||||.||.+++|+|+|
T Consensus 642 vvi~cew~ek~y~~lFsy~~lw~~-----~ei~-----~~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqm 711 (823)
T COG5560 642 VVISCEWEEKRYLSLFSYDPLWTI-----REIG-----AAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQM 711 (823)
T ss_pred eEEeeeccccchhhhhcCCccchh-----HHhh-----hccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhh
Confidence 77889999877665 53 11110 0011 125789999999999999999999999999999999999999
Q ss_pred EeeeCCCeEEEEEeeeEeecccccccceeeeccCcccccccccccCCCCceEEEEEEEEEeecCCCCCeEEEEEeeCCCC
Q 003370 698 DLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYAKLIDEN 777 (825)
Q Consensus 698 ~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVv~H~G~l~gGHYtAy~k~~~~~ 777 (825)
+||++|+|||||||||++.+.+++||++.|.|||.+|||+.|+....+....|+||||.||||+++|||||||+||+.++
T Consensus 712 elwrlP~iLiihLkRFss~rsfrdKiddlVeyPiddldLs~~~~~~~~p~liydlyavDNHygglsgGHYtAyarn~~n~ 791 (823)
T COG5560 712 ELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVDDPRLIYDLYAVDNHYGGLSGGHYTAYARNFANN 791 (823)
T ss_pred hhhcCChheeeehhhhhhcccchhhhhhhhccccccccccceEEeecCcceEEEeeeccccccccCCcceeeeeecccCC
Confidence 99999999999999999999999999999999999999999998777677999999999999999999999999999999
Q ss_pred cEEEeCCCceeecCcCcccCCCeEEEEEEEec
Q 003370 778 RWYHFDDSHVSPVSEGDIKTSAAYVLFYRRVK 809 (825)
Q Consensus 778 ~Wy~fnDs~V~~v~~~~v~s~~AYvLFY~R~~ 809 (825)
+||+|||++|+++.+++.++++||||||+|+.
T Consensus 792 ~wy~fdDsritevdped~vtssaYvLFyrrk~ 823 (823)
T COG5560 792 GWYLFDDSRITEVDPEDSVTSSAYVLFYRRKS 823 (823)
T ss_pred ceEEecCccccccCccccccceeEEEEEEecC
Confidence 99999999999999999999999999999974
No 2
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-95 Score=875.09 Aligned_cols=750 Identities=39% Similarity=0.608 Sum_probs=596.6
Q ss_pred EEEEehHHHHHHHHhccCceeeeeccCCCccccccCCCeeeeEeecCCCCc-eeEEEcccceEEeeccCCCceEEEeCcc
Q 003370 3 MVVVKAMIWKCVEIWKKGRTMFWYLSKSGKSFFVGGPALPRKMISEGIVNE-KRVEVFXLCLKLIDSRDNSQTVIRLSKK 81 (825)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~y~ggp~I~R~Vi~~~~~~~-~~VEvyP~~l~l~~~~~~~~~~~~~Sk~ 81 (825)
.+++|.++|+++ +.||+ . |++++.|.|+..+.... ..||+||+.+.++.........+.++..
T Consensus 75 ~~~~~~~~~~~~--------~~~~~-~-------~~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (842)
T KOG1870|consen 75 YTISPRSVQKLL--------VEWFK-S-------GGAAILRAVFDEGEIERDDFVELYPRGLTLLKNSGNSRTSLALQAD 138 (842)
T ss_pred cccCCHHHHhhc--------ccccc-C-------CCccchhhhhcccccccCCcccccchhhhhccCCCCccceeccccc
Confidence 357899999999 99998 2 89999999999987555 3789999999999887776656899999
Q ss_pred ccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCcc-CCHHHHhccCCCeEEEEEEecC-ceeccCCCCCCccccc
Q 003370 82 ASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSD-QTLDDAMLQMDQDILLEVQVDN-GISMDSTGNDLALVPI 159 (825)
Q Consensus 82 ~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~-~tl~~~~~~~~~~~~~E~~~~~-~~~~~~~~~~~~~~~~ 159 (825)
+|+.++.+..+..+.++.+..|+|.+++.+.. .++...+ .++..+.+..++++++|+.... ++...........++.
T Consensus 139 ~t~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (842)
T KOG1870|consen 139 STCPPLTSYFLESGGLPRTKFAIWASYNEKYL-SLWYKSDPGKLVPTVLFQGRKMVLEVFRKFASQPSDMTLRCWMDWLS 217 (842)
T ss_pred cCccHHHHHHHHhcCCCcccchhhhhhhHhhh-cccccccccccccccccccceEEeeeccccccchhhhchhhcccccc
Confidence 99999999999999999999999999988766 6666666 8999999999999999998643 2211111110001110
Q ss_pred CCCCCcccccCCCCCCCCCCCCcccCCCCCCCCCCCcCCCCCCCCCccccccCCCCcccceecCCCchhHHHHHHHHhCC
Q 003370 160 EPSRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGSTFMDMDDGYDSYNTAKKGEKGGLAGLQNLGNTCFMNSALQCLVHT 239 (825)
Q Consensus 160 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~ 239 (825)
+ ....++|...++ .+...........+|.+||.|+||||||||.+|||.+.
T Consensus 218 ~----~~~~~~~~~~s~-------------------------~~~~~~~~~~~~~~g~~Gl~nlGntcfmns~~q~l~~~ 268 (842)
T KOG1870|consen 218 E----RDPDASGTKETR-------------------------VDFPSEEISSPSERGETGLSNLGNTCFMNSALQCLSNT 268 (842)
T ss_pred c----cccccCCCcccc-------------------------cccccccccCCCcccccccccCCccccchhhhhhhccC
Confidence 0 000011111111 00001112335689999999999999999999999999
Q ss_pred hHHHHHHHhc-CccccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHH
Q 003370 240 PDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLD 318 (825)
Q Consensus 240 p~f~~~~l~~-~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l~~~~~~F~~~~QqDA~Efl~~LLd 318 (825)
+++++||+.. +..++|..+++++.+.++.++..++.++|++....++|..++..++.++++|.|+.|||+|||+.||||
T Consensus 269 ~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~~~v~~~~~~~~~~~~a~~~~g~~q~d~~E~lafllD 348 (842)
T KOG1870|consen 269 PELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGNKSAVAPTSFRTSLASFASEFSGYGQQDSQELLAFLLD 348 (842)
T ss_pred cchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCCccccCchhhhhhhhhccccccCcccccchhhhhHHhh
Confidence 9999999998 556699999999999999999999999999888899999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCCcccccCCCCCChHHHHHHHHhhccccCCCcccccceEEEEEEEEcCCCCCeeeeecCCeeEEEeCCC
Q 003370 319 GLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPS 398 (825)
Q Consensus 319 ~L~eel~~~~~~~~~~~~d~~~~~~~~~a~~~w~~~~~~~~SiI~~lF~G~~~s~i~C~~C~~~S~~~e~F~~LsLpip~ 398 (825)
.||+++++...+||++.+|.+++++.+.+.+.|..|..+++|+|+++|.|++++++.|+.|++++++||||.+|+||+|.
T Consensus 349 glhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~s~i~d~~~~~~~S~~~c~~C~~~svt~d~f~~Lslp~p~ 428 (842)
T KOG1870|consen 349 GLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKRNRSVIVDLFDGTYKSTLQCPTCGKVSVTFDPFGYLSLPLPG 428 (842)
T ss_pred hhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhhccceeeeeecceecccccCccCCCceEEeeccccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeEEEeecceeeEeecCcccccccccCCCc
Q 003370 399 TVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEH 478 (825)
Q Consensus 399 ~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~k~~~d~~~~~~~i~~~d~ 478 (825)
...+.+++++++.++...|+.+.+.+++++++.+|.++|++.+++. .+++.+++++.+.+++++......+..|...++
T Consensus 429 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~l~~~~i~~~~~~~~~~~~~~~~~~i~~~~~ 507 (842)
T KOG1870|consen 429 KEIQKLEVTVPHGDGFRKPGALGVSVAKNGRIRDLLEYLSRTVGLL-SWELKPVEILFDCFNKIFAADELKLDSIYSDEE 507 (842)
T ss_pred CcccceeEEEecCCCCCChhheeeeccccchHHHHHHHHHHHhccc-hhhcccceeccchhhhhhccCccccccccCCcc
Confidence 9999999999999999999999999999999999999999999998 899999999999999999977777889999999
Q ss_pred EEEEEeccCCCCce-eEEEeeecccc--cccccccCCcceeccccEEEEecC-CCCCHHHHHHHHHHHcccccccccccc
Q 003370 479 IVAYRFDRKQGGKI-KLEIVNRWQEK--SASDYLKGSERKLFGAPLVTYLEE-EHLSGADIDIAVSKLLSPLRRTYSSAK 554 (825)
Q Consensus 479 i~~y~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~fg~P~~~~~~~-~~~~~~~l~~~v~~~~~~~~~~~~~~~ 554 (825)
++.|+++....... .+.++++...+ ............+||.|+++.++. ...+..++...+..+.+++...+....
T Consensus 508 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~t~~~l~~~~~~~~s~~~~~~~~~v 587 (842)
T KOG1870|consen 508 LFDYELGVLKVQGSIYAIIVVRFRSRLPRSKGIRSHVSSKLFGLPLLVSVLSGAQSTEEDLLSVICHRTSRYSREPPLNV 587 (842)
T ss_pred eEEeecccccccccceEEEEEeeccccccccCcccCCCccccCCcceeeccCCCcccccchhhHHhhcccccCCcCcccc
Confidence 99999996332222 22222222222 222233445668999999999997 788999999999999888876531110
Q ss_pred ccCCCCCCCCcccccccccCCCCCccccccccccc----------ccceeEEEEecCCCCccCCCccCCCCCCCCceEEE
Q 003370 555 AHGGKENGFLPEVIDELSNSHNESVETAELEDLCS----------RELSFQLSLTDERISSCKPIQKDSILKPGKHIKVL 624 (825)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 624 (825)
..+.....+....+....+.........+++.+. +...+.+.-.+.. ...+.........++
T Consensus 588 -~~~~~~~~~~~~~e~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 659 (842)
T KOG1870|consen 588 -GYGVDDQSLKEVSEQSAESSSSVSRDPSEDDNSDQDLSLECLSEESALRFFQSLESR-------NKSDSEFEPGSTSIA 659 (842)
T ss_pred -ccCCCcccccccccccccccccccCCChhHhccccccchhhccCccccccccccccc-------ccccccccCCCceee
Confidence 0000000000000000000000000000111000 0001111111100 001111122223389
Q ss_pred EEecCccccccCccccccCccccccccccccccCCCCCHHHHHHhhcCCcccCCCCCCCCccccccceEEEEEEeeeCCC
Q 003370 625 LDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPD 704 (825)
Q Consensus 625 i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~w~C~~Ck~~~~A~Kk~~i~~lP~ 704 (825)
++|.+.....|........+++........+.....++|++||+.|+++|.|+.+++||||+|++|++|+|+++||+||+
T Consensus 660 ~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cl~~F~~~E~L~~~~~w~C~~Cke~~~A~Kk~~lwrlPe 739 (842)
T KOG1870|consen 660 VDWSPSAKYKYSSSLVSQPPEVEPRGASRSKGSPAPNSLESCLELFSEPETLGKDDRWYCPQCKELRQATKKLDLWRLPE 739 (842)
T ss_pred cccChhhccccccccccccccccccccccccCCCCcccHHHHHHhhcchhcCCccccccChHHHHHHHHhhhhhhhhCCc
Confidence 99999988885554444456666665555556667999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeeeEeecccccccceeeeccCcccccccccccCCCCceEEEEEEEEEeecCCCCCeEEEEEeeCCCCcEEEeCC
Q 003370 705 VLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDD 784 (825)
Q Consensus 705 iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVv~H~G~l~gGHYtAy~k~~~~~~Wy~fnD 784 (825)
|||||||||+|.++++.|+++.|+||+..|||++|+..++. .+|+||||+||||+|++||||||+|+..+++||+|||
T Consensus 740 iLiihLKrF~~~r~~~~k~~~~v~fPi~~ld~s~~~~~~~~--~~Y~l~av~nHyG~l~~GHYta~~k~~~~~~w~~fdD 817 (842)
T KOG1870|consen 740 ILIIHLKRFQYSRESSSKVKTKVEFPLGSLDLSEFVVNKEQ--VLYDLYAVGNHYGQLSGGHYTAYAKNVGDGKWYLFDD 817 (842)
T ss_pred eEEEEeecceeechhhhhhCccccCCCcCCCcchhhccCcc--ceeeeeeeecccCCcCCcchhhhhhcCCCCceEEecc
Confidence 99999999999999999999999999999999999999864 8999999999999999999999999988999999999
Q ss_pred CceeecCcCcccCCCeEEEEEEEec
Q 003370 785 SHVSPVSEGDIKTSAAYVLFYRRVK 809 (825)
Q Consensus 785 s~V~~v~~~~v~s~~AYvLFY~R~~ 809 (825)
++|+++++++|.+++||+|||+|++
T Consensus 818 s~v~~~~~~~i~t~~aY~Lfy~r~~ 842 (842)
T KOG1870|consen 818 SSVSEVDEDEIDTEAAYVLFYRRLD 842 (842)
T ss_pred ccCCCCChhhcccccceEEEEEecC
Confidence 9999999999999999999999985
No 3
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-65 Score=516.28 Aligned_cols=334 Identities=36% Similarity=0.560 Sum_probs=277.0
Q ss_pred CCcccceecCCCchhHHHHHHHHhCChHHHHHHHhc-CccccccCCCCCchhH-HHHHHHHHHHHHhcCCCCccChHHHH
Q 003370 214 KGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGE-LALAFGDLLRKLWSSGRAAVAPRAFK 291 (825)
Q Consensus 214 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~-~~~~~~~~n~~~~~~~-l~~~l~~L~~~l~~~~~~~i~p~~~~ 291 (825)
.-.+.||+|+|||||||++||||+.+..|...|+.. |.+.+|.++|.+..|. .+..|..|...|...+...|+|+.|+
T Consensus 68 n~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~sis~~nF~ 147 (415)
T COG5533 68 NLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPKSISPRNFI 147 (415)
T ss_pred ccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCcccchHHHH
Confidence 456899999999999999999999999999977776 8999999999999995 45566666677766677889999999
Q ss_pred HHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhhcC-CCcccccCCC-----CCChHHHHHHHHhhccccCCCccccc
Q 003370 292 GKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQ-KPYIEMKDSG-----GRPDEEVANECWKNHKARNDSLIVDV 365 (825)
Q Consensus 292 ~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~-~~~~~~~d~~-----~~~~~~~a~~~w~~~~~~~~SiI~~l 365 (825)
..++..++.|++.+|||||||+.++||.||||++.-.. +|..+.+|.. ..|-.....-.|+.|...|.|+|.++
T Consensus 148 ~i~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn~S~v~~~ 227 (415)
T COG5533 148 DILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSLVAKT 227 (415)
T ss_pred HHHccccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccchHHHHHH
Confidence 99999999999999999999999999999999987543 3434443321 11111222347999999999999999
Q ss_pred ceEEEEEEEEcCCCCCeeeeecCCeeEEEeCCCCceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCc
Q 003370 366 FQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKI 445 (825)
Q Consensus 366 F~G~~~s~i~C~~C~~~S~~~e~F~~LsLpip~~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~ 445 (825)
|.||++++++|..|++.|+++.+|..|++|+|..
T Consensus 228 f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v---------------------------------------------- 261 (415)
T COG5533 228 FFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEV---------------------------------------------- 261 (415)
T ss_pred HhhhhhhhhhhhhcCCceeEEeccceeeeccchh----------------------------------------------
Confidence 9999999999999999999999999999997521
Q ss_pred ccceeEEEeecceeeEeecCcccccccccCCCcEEEEEeccCCCCceeEEEeeecccccccccccCCcceeccccEEEEe
Q 003370 446 DEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYL 525 (825)
Q Consensus 446 ~~~l~~~e~~~~~~~k~~~d~~~~~~~i~~~d~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~ 525 (825)
T Consensus 262 -------------------------------------------------------------------------------- 261 (415)
T COG5533 262 -------------------------------------------------------------------------------- 261 (415)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCHHHHHHHHHHHccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeEEEEecCCCCc
Q 003370 526 EEEHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISS 605 (825)
Q Consensus 526 ~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (825)
T Consensus 262 -------------------------------------------------------------------------------- 261 (415)
T COG5533 262 -------------------------------------------------------------------------------- 261 (415)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCccCCCCCCCCceEEEEEecCccccccCccccccCccccccccccccccCCCCCHHHHHHhhcCCcccCCCCCCCCc
Q 003370 606 CKPIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCP 685 (825)
Q Consensus 606 ~~~~~~~~~~~~~~~~~i~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~w~C~ 685 (825)
..+.|.|||+.|+++|.|+++|.|.||
T Consensus 262 -----------------------------------------------------~~~~l~eC~~~f~~~e~L~g~d~W~Cp 288 (415)
T COG5533 262 -----------------------------------------------------VQLGLQECIDRFYEEEKLEGKDAWRCP 288 (415)
T ss_pred -----------------------------------------------------eeecHHHHHHHhhhHHhhcCcccccCc
Confidence 013589999999999999999999999
Q ss_pred cccccceEEEEEEeeeCCCeEEEEEeeeEeeccccccccee----eeccCcccccccccccCCCCceEEEEEEEEEeecC
Q 003370 686 QCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTF----VNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGG 761 (825)
Q Consensus 686 ~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~----V~FPl~~LDls~~~~~~~~~~~~YdL~AVv~H~G~ 761 (825)
+|++++.++|++.|.+||++|||||+||.-.-..+.||++. -+||.+-++--.|-....-.+.+|.|+||+||+|+
T Consensus 289 kC~~k~ss~K~~~I~~lP~~LII~i~RF~i~V~~~~kiD~p~gw~~~~~~e~~v~~~f~~~~~~~P~~Y~L~gv~Ch~G~ 368 (415)
T COG5533 289 KCGRKESSRKRMEILVLPDVLIIHISRFHISVMGRKKIDTPQGWKNTASVEVNVTLLFNNGIGYIPRKYSLLGVVCHNGT 368 (415)
T ss_pred hhcccccchheEEEEecCceEEEEeeeeeEEeecccccCCCcchhccCCceecccccccCCCCCCccceeEEEEEeecce
Confidence 99999999999999999999999999999665556677664 24443222221221112224578999999999999
Q ss_pred CCCCeEEEEEeeCCCCcEEEeCCCceeecCc-CcccCCCeEEEEEEEe
Q 003370 762 LGGGHYTAYAKLIDENRWYHFDDSHVSPVSE-GDIKTSAAYVLFYRRV 808 (825)
Q Consensus 762 l~gGHYtAy~k~~~~~~Wy~fnDs~V~~v~~-~~v~s~~AYvLFY~R~ 808 (825)
+.||||+++++ .++.|+.|||+.|++++- -+....+||||||+|.
T Consensus 369 L~gGHY~s~v~--~~~~W~~~dDs~vr~~~~~t~~~~pSsYilFY~r~ 414 (415)
T COG5533 369 LNGGHYFSEVK--RSGTWNVYDDSQVRKGSRTTSGSHPSSYILFYTRS 414 (415)
T ss_pred ecCceeEEeee--ecCceEEechhheeeccceecccCCcceEEEEEec
Confidence 99999999999 579999999999999983 4555679999999995
No 4
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-64 Score=554.17 Aligned_cols=305 Identities=33% Similarity=0.581 Sum_probs=273.0
Q ss_pred CCCcccceecCCCchhHHHHHHHHhCChHHHHHHHhc-CccccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHH
Q 003370 213 EKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFK 291 (825)
Q Consensus 213 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~-~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~ 291 (825)
...-.+||.|+|||||+|||||||.++|||.+||++. +..... ....++.++|+..+.....+...+|+|..|+
T Consensus 104 ~~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~-----~~~~C~lc~~q~hi~~A~~~~g~pisP~~i~ 178 (545)
T KOG1865|consen 104 PAAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCH-----RAKFCMLCTFQAHITRALHNPGHPISPSQIL 178 (545)
T ss_pred cccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhcc-----ccCeeeehHHHHHHHHHhcCCCCccChHHHH
Confidence 4556899999999999999999999999999999987 332222 2345789999999888888777899999999
Q ss_pred HHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCChHHHHHHHHhhccccCCCcccccceEEEE
Q 003370 292 GKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYK 371 (825)
Q Consensus 292 ~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~d~~~~~~~~~a~~~w~~~~~~~~SiI~~lF~G~~~ 371 (825)
..|..+...|..|.|.||||||++++|.|+.-+-..... ..+.....++|+++|+|.++
T Consensus 179 s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL~g~~~---------------------~~~~sq~ttlv~~iFGG~Lr 237 (545)
T KOG1865|consen 179 SNLRNISAHFGRGRQEDAHEFLRFTVDAMQKACLPGHKQ---------------------VDPRSQDTTLVHQIFGGYLR 237 (545)
T ss_pred HhhhhhcccccCCchhhHHHHHHHHHHHHHHhhcCCCcc---------------------CCcccccceehhhhhccchh
Confidence 999999999999999999999999999999776421111 01234556899999999999
Q ss_pred EEEEcCCCCCeeeeecCCeeEEEeCCCCceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeE
Q 003370 372 STLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLL 451 (825)
Q Consensus 372 s~i~C~~C~~~S~~~e~F~~LsLpip~~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~ 451 (825)
+.++|..|+++|.++|+.++|+|.|-
T Consensus 238 S~vkC~~C~~vS~tyE~~~dltvei~------------------------------------------------------ 263 (545)
T KOG1865|consen 238 SQIKCLHCKGVSDTYEPYLDLTLEIQ------------------------------------------------------ 263 (545)
T ss_pred hceecccCCCcccccccccceEEEec------------------------------------------------------
Confidence 99999999999999999999999861
Q ss_pred EEeecceeeEeecCcccccccccCCCcEEEEEeccCCCCceeEEEeeecccccccccccCCcceeccccEEEEecCCCCC
Q 003370 452 AEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLS 531 (825)
Q Consensus 452 ~e~~~~~~~k~~~d~~~~~~~i~~~d~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~ 531 (825)
T Consensus 264 -------------------------------------------------------------------------------- 263 (545)
T KOG1865|consen 264 -------------------------------------------------------------------------------- 263 (545)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeEEEEecCCCCccCCCcc
Q 003370 532 GADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQK 611 (825)
Q Consensus 532 ~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (825)
T Consensus 264 -------------------------------------------------------------------------------- 263 (545)
T KOG1865|consen 264 -------------------------------------------------------------------------------- 263 (545)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCceEEEEEecCccccccCccccccCccccccccccccccCCCCCHHHHHHhhcCCcccCCCCCCCCccccccc
Q 003370 612 DSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHR 691 (825)
Q Consensus 612 ~~~~~~~~~~~i~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~w~C~~Ck~~~ 691 (825)
..-+|.+||+.|+++|.|+++|+|.|.+||+++
T Consensus 264 -----------------------------------------------d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v 296 (545)
T KOG1865|consen 264 -----------------------------------------------DASSLQQALEQFTKPEKLDGENAYHCGRCKQKV 296 (545)
T ss_pred -----------------------------------------------cchhHHHHHHHhhhHHhhCCccccccchhhhhC
Confidence 012899999999999999999999999999999
Q ss_pred eEEEEEEeeeCCCeEEEEEeeeEeecccccccceeeeccCcccccccccccCCCCceEEEEEEEEEeec-CCCCCeEEEE
Q 003370 692 QATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYG-GLGGGHYTAY 770 (825)
Q Consensus 692 ~A~Kk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVv~H~G-~l~gGHYtAy 770 (825)
.|.|++.|.++|.||+||||||+. .+..||++.|.|| +.|||.||+..+++.+.+|.||||++|.| ....|||++|
T Consensus 297 ~A~K~lti~raPnVLTi~LKRF~~--~~~gKI~K~I~fP-E~LDl~PyMS~~~e~s~~Y~LYavlVH~g~~~~~GHY~cY 373 (545)
T KOG1865|consen 297 PASKQLTIHRAPNVLTLHLKRFSN--GTGGKISKPVSFP-ETLDLQPYMSQPNEGSTVYKLYAVLVHLGTSCHSGHYFCY 373 (545)
T ss_pred cccceeeeecCCceEEEeeehhcc--CcccccccccCCc-ccccccccccCCCCCCceEEEEEEEEeccccccCCceEEE
Confidence 999999999999999999999998 5568999999999 79999999998888899999999999999 8999999999
Q ss_pred EeeCCCCcEEEeCCCceeecCcCcccCCCeEEEEEEEe
Q 003370 771 AKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRV 808 (825)
Q Consensus 771 ~k~~~~~~Wy~fnDs~V~~v~~~~v~s~~AYvLFY~R~ 808 (825)
+|. ..|+||.|||+.|+.++.+.|++..||||||.|.
T Consensus 374 vks-~~g~Wy~~DDS~V~~~~~~~VLsq~AYmLfY~R~ 410 (545)
T KOG1865|consen 374 VKS-QNGQWYKMDDSEVTQSSIESVLSQQAYILFYARK 410 (545)
T ss_pred EEc-CCCceEEccCceeeeccccceecccceEEEEEee
Confidence 997 7889999999999999999999999999999997
No 5
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.3e-63 Score=540.96 Aligned_cols=287 Identities=31% Similarity=0.564 Sum_probs=252.2
Q ss_pred ceecCCCchhHHHHHHHHhCChHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHHHhcCC--CCccChHHHHHHHhh
Q 003370 219 GLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSG--RAAVAPRAFKGKLAR 296 (825)
Q Consensus 219 GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~--~~~i~p~~~~~~l~~ 296 (825)
||.|+||||||||+||||+| ..++.+|+.||.+||.+. ...++|..|+.+++.
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~-------------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~ 55 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF-------------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKR 55 (300)
T ss_pred CccCCCcceehhHHHHHhhh-------------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHh
Confidence 99999999999999999988 357889999999999864 357999999999999
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCChHHHHHHHHhhccccCCCcccccceEEEEEEEEc
Q 003370 297 FAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVC 376 (825)
Q Consensus 297 ~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~d~~~~~~~~~a~~~w~~~~~~~~SiI~~lF~G~~~s~i~C 376 (825)
..+.|.+++||||||||.+|||.||+++++..++...+ ....+........++|.++|+|++.++++|
T Consensus 56 ~~~~f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~------------~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C 123 (300)
T cd02663 56 ENELFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKAN------------RKLNNNNNAEPQPTWVHEIFQGILTNETRC 123 (300)
T ss_pred hcCCCCCCccccHHHHHHHHHHHHHHHHHHHhhccccc------------ccccccccCCcCCCChhhhCceEEEeeEEe
Confidence 99999999999999999999999999998765433211 001122234456789999999999999999
Q ss_pred CCCCCeeeeecCCeeEEEeCCCCceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeEEEeec
Q 003370 377 PVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYN 456 (825)
Q Consensus 377 ~~C~~~S~~~e~F~~LsLpip~~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~ 456 (825)
..|++++.++|+|++|+|+||.
T Consensus 124 ~~C~~~s~~~e~f~~Lsl~i~~---------------------------------------------------------- 145 (300)
T cd02663 124 LTCETVSSRDETFLDLSIDVEQ---------------------------------------------------------- 145 (300)
T ss_pred CCCCCCccccceeEEeccCCCC----------------------------------------------------------
Confidence 9999999999999999999852
Q ss_pred ceeeEeecCcccccccccCCCcEEEEEeccCCCCceeEEEeeecccccccccccCCcceeccccEEEEecCCCCCHHHHH
Q 003370 457 HQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADID 536 (825)
Q Consensus 457 ~~~~k~~~d~~~~~~~i~~~d~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~~l~ 536 (825)
T Consensus 146 -------------------------------------------------------------------------------- 145 (300)
T cd02663 146 -------------------------------------------------------------------------------- 145 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeEEEEecCCCCccCCCccCCCCC
Q 003370 537 IAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSILK 616 (825)
Q Consensus 537 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (825)
T Consensus 146 -------------------------------------------------------------------------------- 145 (300)
T cd02663 146 -------------------------------------------------------------------------------- 145 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCceEEEEEecCccccccCccccccCccccccccccccccCCCCCHHHHHHhhcCCcccCCCCCCCCccccccceEEEE
Q 003370 617 PGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKK 696 (825)
Q Consensus 617 ~~~~~~i~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~w~C~~Ck~~~~A~Kk 696 (825)
..+|++||+.|+++|.|.+++.|+|++|++++.|+|+
T Consensus 146 -------------------------------------------~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~ 182 (300)
T cd02663 146 -------------------------------------------NTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKR 182 (300)
T ss_pred -------------------------------------------cCCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEE
Confidence 1379999999999999999999999999999999999
Q ss_pred EEeeeCCCeEEEEEeeeEeecc--cccccceeeeccCcccccccccccCCCCceEEEEEEEEEeec-CCCCCeEEEEEee
Q 003370 697 LDLWMLPDVLVFHLKRFSYSRY--LKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYG-GLGGGHYTAYAKL 773 (825)
Q Consensus 697 ~~i~~lP~iLiIhLKRF~~~~~--~~~Ki~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVv~H~G-~l~gGHYtAy~k~ 773 (825)
+.|+++|+|||||||||.|+.. ...|+++.|.||+ .|||.++..........|+|+|||+|.| ++++|||+||+|+
T Consensus 183 ~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~-~L~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k~ 261 (300)
T cd02663 183 MKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPL-ELRLFNTTDDAENPDRLYELVAVVVHIGGGPNHGHYVSIVKS 261 (300)
T ss_pred EEeccCCceeEEEEEeEEeecccCCceecCceEecCc-EEeccccccccCCCCeEEEEEEEEEEecCCCCCCceEEEEEC
Confidence 9999999999999999999864 3689999999995 8999988654444568999999999999 5999999999996
Q ss_pred CCCCcEEEeCCCceeecCcCccc--------CCCeEEEEEE
Q 003370 774 IDENRWYHFDDSHVSPVSEGDIK--------TSAAYVLFYR 806 (825)
Q Consensus 774 ~~~~~Wy~fnDs~V~~v~~~~v~--------s~~AYvLFY~ 806 (825)
+++||+|||+.|+++++++|. +.+||||||+
T Consensus 262 --~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~~aYiLfY~ 300 (300)
T cd02663 262 --HGGWLLFDDETVEKIDENAVEEFFGDSPNQATAYVLFYQ 300 (300)
T ss_pred --CCcEEEEcCCceEEcCHHHHHHhcCCCCCCCceEEEEeC
Confidence 999999999999999988885 6889999996
No 6
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.3e-61 Score=527.45 Aligned_cols=295 Identities=31% Similarity=0.529 Sum_probs=255.0
Q ss_pred ceecCCCchhHHHHHHHHhCChHHHHHHHhcCcccc-ccCC----CCCchhHHHHHHHHHHHHHhcCCCCccChHHHHHH
Q 003370 219 GLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEI-NTEN----PLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGK 293 (825)
Q Consensus 219 GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~-~~~n----~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~ 293 (825)
||.|+||||||||+||||+|+|+|++++++...... ...+ .......++.+|+.||.+|+.+...+++|..|..+
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~~ 80 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVKA 80 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHHHHH
Confidence 899999999999999999999999999987522111 1000 00113478999999999999988899999999998
Q ss_pred HhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCChHHHHHHHHhhccccCCCcccccceEEEEEE
Q 003370 294 LARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKST 373 (825)
Q Consensus 294 l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~d~~~~~~~~~a~~~w~~~~~~~~SiI~~lF~G~~~s~ 373 (825)
++ |..++|||||||+.+|||.||++++.... ....++|.++|.|++.++
T Consensus 81 l~-----~~~~~QqDa~EFl~~lLd~L~~~l~~~~~--------------------------~~~~~~i~~~F~G~~~~~ 129 (324)
T cd02668 81 LG-----LDTGQQQDAQEFSKLFLSLLEAKLSKSKN--------------------------PDLKNIVQDLFRGEYSYV 129 (324)
T ss_pred hC-----CCCccccCHHHHHHHHHHHHHHHHhhccC--------------------------CcccchhhhhcceEEEEE
Confidence 84 67889999999999999999999864211 112467999999999999
Q ss_pred EEcCCCCCeeeeecCCeeEEEeCCCCceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeEEE
Q 003370 374 LVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAE 453 (825)
Q Consensus 374 i~C~~C~~~S~~~e~F~~LsLpip~~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~e 453 (825)
++|..|++.+.+.|+|+.|+|+||.
T Consensus 130 ~~C~~C~~~s~~~e~f~~l~l~i~~------------------------------------------------------- 154 (324)
T cd02668 130 TQCSKCGRESSLPSKFYELELQLKG------------------------------------------------------- 154 (324)
T ss_pred EEeCCCCCccccccccEEEEEEecc-------------------------------------------------------
Confidence 9999999999999999999999751
Q ss_pred eecceeeEeecCcccccccccCCCcEEEEEeccCCCCceeEEEeeecccccccccccCCcceeccccEEEEecCCCCCHH
Q 003370 454 VYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGA 533 (825)
Q Consensus 454 ~~~~~~~k~~~d~~~~~~~i~~~d~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~ 533 (825)
T Consensus 155 -------------------------------------------------------------------------------- 154 (324)
T cd02668 155 -------------------------------------------------------------------------------- 154 (324)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeEEEEecCCCCccCCCccCC
Q 003370 534 DIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDS 613 (825)
Q Consensus 534 ~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (825)
T Consensus 155 -------------------------------------------------------------------------------- 154 (324)
T cd02668 155 -------------------------------------------------------------------------------- 154 (324)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCceEEEEEecCccccccCccccccCccccccccccccccCCCCCHHHHHHhhcCCcccCCCCCCCCccccccceE
Q 003370 614 ILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQA 693 (825)
Q Consensus 614 ~~~~~~~~~i~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~w~C~~Ck~~~~A 693 (825)
..+|++||+.|+++|.|.+++.|+|++|++++.|
T Consensus 155 ----------------------------------------------~~sl~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a 188 (324)
T cd02668 155 ----------------------------------------------HKTLEECIDEFLKEEQLTGDNQYFCESCNSKTDA 188 (324)
T ss_pred ----------------------------------------------cCCHHHHHHHhhCceecCCCccccCCCCCceeee
Confidence 0278999999999999999999999999999999
Q ss_pred EEEEEeeeCCCeEEEEEeeeEeec--ccccccceeeeccCcccccccccccCCCCceEEEEEEEEEeec-CCCCCeEEEE
Q 003370 694 TKKLDLWMLPDVLVFHLKRFSYSR--YLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYG-GLGGGHYTAY 770 (825)
Q Consensus 694 ~Kk~~i~~lP~iLiIhLKRF~~~~--~~~~Ki~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVv~H~G-~l~gGHYtAy 770 (825)
+|++.|.++|+||+||||||.|+. ..+.|+++.|.|| +.|||++|+.....+...|+|+|||+|.| ++.+|||+||
T Consensus 189 ~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~fp-~~Ldl~~~~~~~~~~~~~Y~L~~vI~H~G~~~~~GHY~~~ 267 (324)
T cd02668 189 TRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFP-EILDMGEYLAESDEGSYVYELSGVLIHQGVSAYSGHYIAH 267 (324)
T ss_pred EEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEECC-CeEechhhcccccCCCcEEEEEEEEEEcCCCCCCEeeEEE
Confidence 999999999999999999999984 4578999999999 69999999976655678999999999999 5899999999
Q ss_pred EeeCCCCcEEEeCCCceeecCcCcc---------------------cCCCeEEEEEE
Q 003370 771 AKLIDENRWYHFDDSHVSPVSEGDI---------------------KTSAAYVLFYR 806 (825)
Q Consensus 771 ~k~~~~~~Wy~fnDs~V~~v~~~~v---------------------~s~~AYvLFY~ 806 (825)
+|+..+++||.|||+.|++++.++| .+..|||||||
T Consensus 268 ~k~~~~~~W~~fdD~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 268 IKDEQTGEWYKFNDEDVEEMPGKPLKLGNSEDPAKPRKSEIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred EECCCCCcEEEEECCceEEcCHHHhhcccccccccccccccCCCccccCceEEEEeC
Confidence 9986679999999999999985544 46789999996
No 7
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-60 Score=523.09 Aligned_cols=299 Identities=30% Similarity=0.499 Sum_probs=244.0
Q ss_pred cCCCCcccceecCCCchhHHHHHHHHhCChHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHH
Q 003370 211 KGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAF 290 (825)
Q Consensus 211 ~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~ 290 (825)
+....|++||.|+||||||||+||||+|+|+||+++.+.. +.......+ ..+..++..++......+.|..|
T Consensus 18 ~~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~-------~~~~~~~~~-q~~~~~l~~~~~~~~~~~~P~~~ 89 (332)
T cd02671 18 RENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLV-------SLISSVEQL-QSSFLLNPEKYNDELANQAPRRL 89 (332)
T ss_pred cccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhh-------cccCcHHHH-HHHHHHHHHHHhhcccccCHHHH
Confidence 4567899999999999999999999999999999986532 011111122 22234455666655566789999
Q ss_pred HHHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCChHHHHHHHHhhccccCCCcccccceEEE
Q 003370 291 KGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQY 370 (825)
Q Consensus 291 ~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~d~~~~~~~~~a~~~w~~~~~~~~SiI~~lF~G~~ 370 (825)
+.++++.+|.|.++.||||||||.+|||.||+ +|.++|+|++
T Consensus 90 ~~~l~~~~~~f~~~~QQDA~EFl~~LLd~L~~--------------------------------------~i~~~F~g~~ 131 (332)
T cd02671 90 LNALREVNPMYEGYLQHDAQEVLQCILGNIQE--------------------------------------LVEKDFQGQL 131 (332)
T ss_pred HHHHHHhccccCCccccCHHHHHHHHHHHHHH--------------------------------------HHHhhhceEE
Confidence 99999999999999999999999999999983 3678999999
Q ss_pred EEEEEcCCCCCeeeeecCCeeEEEeCCCCceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCccccee
Q 003370 371 KSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLL 450 (825)
Q Consensus 371 ~s~i~C~~C~~~S~~~e~F~~LsLpip~~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~ 450 (825)
+++++|..|++.+.++|+|++|+||||........
T Consensus 132 ~~~~~C~~C~~~s~~~E~f~~lsL~i~~~~~~~~~--------------------------------------------- 166 (332)
T cd02671 132 VLRTRCLECETFTERREDFQDISVPVQESELSKSE--------------------------------------------- 166 (332)
T ss_pred EEEEEeCCCCCeeceecccEEEEEEeCCCcccccc---------------------------------------------
Confidence 99999999999999999999999999853200000
Q ss_pred EEEeecceeeEeecCcccccccccCCCcEEEEEeccCCCCceeEEEeeecccccccccccCCcceeccccEEEEecCCCC
Q 003370 451 LAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHL 530 (825)
Q Consensus 451 ~~e~~~~~~~k~~~d~~~~~~~i~~~d~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~ 530 (825)
.. +. +
T Consensus 167 ---------------~~---~~----------------------------------------------------~----- 171 (332)
T cd02671 167 ---------------ES---SE----------------------------------------------------I----- 171 (332)
T ss_pred ---------------cc---cc----------------------------------------------------c-----
Confidence 00 00 0
Q ss_pred CHHHHHHHHHHHccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeEEEEecCCCCccCCCc
Q 003370 531 SGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQ 610 (825)
Q Consensus 531 ~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (825)
+
T Consensus 172 -------------~------------------------------------------------------------------ 172 (332)
T cd02671 172 -------------S------------------------------------------------------------------ 172 (332)
T ss_pred -------------c------------------------------------------------------------------
Confidence 0
Q ss_pred cCCCCCCCCceEEEEEecCccccccCccccccCccccccccccccccCCCCCHHHHHHhhcCCcccCCCCCCCCcccccc
Q 003370 611 KDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEH 690 (825)
Q Consensus 611 ~~~~~~~~~~~~i~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~w~C~~Ck~~ 690 (825)
........+|++||+.|+++|.|.++|.|+|++|++.
T Consensus 173 -------------------------------------------~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~ 209 (332)
T cd02671 173 -------------------------------------------PDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHY 209 (332)
T ss_pred -------------------------------------------cccccccCCHHHHHHHhCCcceecCCCCeeCCCCCCc
Confidence 0000123599999999999999999999999999999
Q ss_pred ceEEEEEEeeeCCCeEEEEEeeeEeec------ccccccceeeeccCcccccccccccCCCCceEEEEEEEEEeec-CCC
Q 003370 691 RQATKKLDLWMLPDVLVFHLKRFSYSR------YLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYG-GLG 763 (825)
Q Consensus 691 ~~A~Kk~~i~~lP~iLiIhLKRF~~~~------~~~~Ki~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVv~H~G-~l~ 763 (825)
+.|+|++.|+++|+||+||||||.++. ....|+++.|.||+ .|||.+|...+ ....|+|+|||+|.| +++
T Consensus 210 ~~a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~~~~~Ki~~~v~fp~-~L~~~~~~~~~--~~~~Y~L~~VI~H~G~~~~ 286 (332)
T cd02671 210 TEAERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLLTPL-KLSLEEWSTKP--KNDVYRLFAVVMHSGATIS 286 (332)
T ss_pred eeEEEEEEEecCCCEEEEEeeeeccccccccccCCceecCccccCcc-ccccccccCCC--CCCeEEEEEEEEEcCCCCC
Confidence 999999999999999999999999874 24679999999996 79999887654 457899999999999 689
Q ss_pred CCeEEEEEeeCCCCcEEEeCCCceeecCcCccc---------CCCeEEEEEE
Q 003370 764 GGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIK---------TSAAYVLFYR 806 (825)
Q Consensus 764 gGHYtAy~k~~~~~~Wy~fnDs~V~~v~~~~v~---------s~~AYvLFY~ 806 (825)
+|||+||+| ||+|||+.|++++++++. +.+||||||+
T Consensus 287 ~GHY~a~vr------W~~fdD~~V~~~~~~~~~~~~~~~~~~~~~aYiLfY~ 332 (332)
T cd02671 287 SGHYTAYVR------WLLFDDSEVKVTEEKDFLEALSPNTSSTSTPYLLFYK 332 (332)
T ss_pred CCeEEEEEE------EEEEcCcceEEccHHHHHhhcCCCCCCCCceEEEEEC
Confidence 999999998 999999999999876653 4689999995
No 8
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.4e-60 Score=524.13 Aligned_cols=317 Identities=36% Similarity=0.653 Sum_probs=265.2
Q ss_pred cceecCCCchhHHHHHHHHhCChHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHHHh-cCCCCccChHHHHHHHhh
Q 003370 218 AGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLW-SSGRAAVAPRAFKGKLAR 296 (825)
Q Consensus 218 ~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~-~~~~~~i~p~~~~~~l~~ 296 (825)
+||.|+||||||||+||||+|+|+|+++|+........ .......++.++|+.|+..|+ ++....+.|..|+.+++.
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~--~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~ 78 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTC--LSCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSWK 78 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCcccccc--ccCCccccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Confidence 59999999999999999999999999999876211100 011224578999999999994 445678999999999999
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCChHHHHHHHHhhccccCCCcccccceEEEEEEEEc
Q 003370 297 FAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVC 376 (825)
Q Consensus 297 ~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~d~~~~~~~~~a~~~w~~~~~~~~SiI~~lF~G~~~s~i~C 376 (825)
..+.|.++.|||||||+.+|||.||+++......+ .......++|.++|+|++.++++|
T Consensus 79 ~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~---------------------~~~~~~~~~i~~~F~g~~~~~~~C 137 (328)
T cd02660 79 HSRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEA---------------------NDESHCNCIIHQTFSGSLQSSVTC 137 (328)
T ss_pred hchhhcccccccHHHHHHHHHHHHHHHhhcccccc---------------------cccccCCceeEEecccEEEeeeEc
Confidence 99999999999999999999999999987643321 011234678999999999999999
Q ss_pred CCCCCeeeeecCCeeEEEeCCCCceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeEEEeec
Q 003370 377 PVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYN 456 (825)
Q Consensus 377 ~~C~~~S~~~e~F~~LsLpip~~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~ 456 (825)
..|++.+.+.|+|++|+|+||.......
T Consensus 138 ~~C~~~s~~~e~f~~lsl~i~~~~~~~~---------------------------------------------------- 165 (328)
T cd02660 138 QRCGGVSTTVDPFLDLSLDIPNKSTPSW---------------------------------------------------- 165 (328)
T ss_pred CCCCCccceecccceeeeeccccccccc----------------------------------------------------
Confidence 9999999999999999999985421000
Q ss_pred ceeeEeecCcccccccccCCCcEEEEEeccCCCCceeEEEeeecccccccccccCCcceeccccEEEEecCCCCCHHHHH
Q 003370 457 HQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADID 536 (825)
Q Consensus 457 ~~~~k~~~d~~~~~~~i~~~d~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~~l~ 536 (825)
.
T Consensus 166 ---------~---------------------------------------------------------------------- 166 (328)
T cd02660 166 ---------A---------------------------------------------------------------------- 166 (328)
T ss_pred ---------c----------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeEEEEecCCCCccCCCccCCCCC
Q 003370 537 IAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSILK 616 (825)
Q Consensus 537 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (825)
. .
T Consensus 167 ----------------------~------------~-------------------------------------------- 168 (328)
T cd02660 167 ----------------------L------------G-------------------------------------------- 168 (328)
T ss_pred ----------------------c------------c--------------------------------------------
Confidence 0 0
Q ss_pred CCCceEEEEEecCccccccCccccccCccccccccccccccCCCCCHHHHHHhhcCCcccCCCCCCCCccccccceEEEE
Q 003370 617 PGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKK 696 (825)
Q Consensus 617 ~~~~~~i~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~w~C~~Ck~~~~A~Kk 696 (825)
........+|++||+.|+++|.+++.+ |+|++|++++.|.|+
T Consensus 169 -------------------------------------~~~~~~~~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~~~~~~~ 210 (328)
T cd02660 169 -------------------------------------ESGVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATKQ 210 (328)
T ss_pred -------------------------------------ccCCCCCCCHHHHHHHhcCccccCCCC-ccCCCCCCccceEEE
Confidence 000023469999999999999998877 999999999999999
Q ss_pred EEeeeCCCeEEEEEeeeEeec-ccccccceeeeccCccccccccccc---------CCCCceEEEEEEEEEeecCCCCCe
Q 003370 697 LDLWMLPDVLVFHLKRFSYSR-YLKNKLDTFVNFPILNLDLSKYMKS---------KDGESYVYDLFAISNHYGGLGGGH 766 (825)
Q Consensus 697 ~~i~~lP~iLiIhLKRF~~~~-~~~~Ki~~~V~FPl~~LDls~~~~~---------~~~~~~~YdL~AVv~H~G~l~gGH 766 (825)
+.|.++|++|+||||||.++. +...|+++.|.||. .|||++|+.. .......|+|+|||+|.|+.++||
T Consensus 211 ~~i~~lP~~Lii~lkRf~~~~~~~~~K~~~~v~fp~-~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GH 289 (328)
T cd02660 211 LSIKKLPPVLCFQLKRFEHSLNKTSRKIDTYVQFPL-ELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKGTLDTGH 289 (328)
T ss_pred EEecCCCceeEEEEEeEEecCCCCCcCCCcEEeCCC-EechhhhcccccccccccccCCCCceEEEEEEEEeeccCCCCc
Confidence 999999999999999999987 55689999999995 7999999985 223567899999999999999999
Q ss_pred EEEEEeeCCCCcEEEeCCCceeecCcCcccCCCeEEEEEE
Q 003370 767 YTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYR 806 (825)
Q Consensus 767 YtAy~k~~~~~~Wy~fnDs~V~~v~~~~v~s~~AYvLFY~ 806 (825)
||||+|. .+++||+|||+.|+++++++|...+||||||.
T Consensus 290 Y~~~~~~-~~~~W~~~nD~~V~~~~~~~v~~~~ayil~Y~ 328 (328)
T cd02660 290 YTAYCRQ-GDGQWFKFDDAMITRVSEEEVLKSQAYLLFYH 328 (328)
T ss_pred EEEEEEC-CCCcEEEEECCeeEECCHHHhcCCCcEEEEeC
Confidence 9999996 45999999999999999999999999999994
No 9
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.9e-60 Score=512.72 Aligned_cols=252 Identities=41% Similarity=0.752 Sum_probs=229.4
Q ss_pred ceecCCCchhHHHHHHHHhCChHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHHHHhhhC
Q 003370 219 GLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFA 298 (825)
Q Consensus 219 GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l~~~~ 298 (825)
||.|+||||||||+||||+|+|+||++|++ +|..|+..+....
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~-------------------------------------~P~~~~~~l~~~~ 43 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE-------------------------------------TPKELFSQVCRKA 43 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH-------------------------------------CHHHHHHHHHHhh
Confidence 999999999999999999999999999874 6888999999889
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCChHHHHHHHHhhccccCCCcccccceEEEEEEEEcCC
Q 003370 299 PQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPV 378 (825)
Q Consensus 299 ~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~d~~~~~~~~~a~~~w~~~~~~~~SiI~~lF~G~~~s~i~C~~ 378 (825)
+.|.+++||||||||.+|||.|+ ++|.++|.|++.++++|..
T Consensus 44 ~~f~~~~QqDA~Efl~~lld~l~--------------------------------------~~i~~~F~G~~~~~i~C~~ 85 (279)
T cd02667 44 PQFKGYQQQDSHELLRYLLDGLR--------------------------------------TFIDSIFGGELTSTIMCES 85 (279)
T ss_pred HhhcCCchhhHHHHHHHHHHHHH--------------------------------------HhhhhhcceEEEEEEEcCC
Confidence 99999999999999999999998 1478899999999999999
Q ss_pred CCCeeeeecCCeeEEEeCCCCceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeEEEeecce
Q 003370 379 CSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQ 458 (825)
Q Consensus 379 C~~~S~~~e~F~~LsLpip~~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~ 458 (825)
|++.+.+.|+|+.|+||+|...
T Consensus 86 C~~~s~~~E~f~~L~Lp~~~~~---------------------------------------------------------- 107 (279)
T cd02667 86 CGTVSLVYEPFLDLSLPRSDEI---------------------------------------------------------- 107 (279)
T ss_pred CCCEeCccccceEEecCCCccc----------------------------------------------------------
Confidence 9999999999999988864210
Q ss_pred eeEeecCcccccccccCCCcEEEEEeccCCCCceeEEEeeecccccccccccCCcceeccccEEEEecCCCCCHHHHHHH
Q 003370 459 IFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADIDIA 538 (825)
Q Consensus 459 ~~k~~~d~~~~~~~i~~~d~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~~l~~~ 538 (825)
T Consensus 108 -------------------------------------------------------------------------------- 107 (279)
T cd02667 108 -------------------------------------------------------------------------------- 107 (279)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeEEEEecCCCCccCCCccCCCCCCC
Q 003370 539 VSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSILKPG 618 (825)
Q Consensus 539 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (825)
T Consensus 108 -------------------------------------------------------------------------------- 107 (279)
T cd02667 108 -------------------------------------------------------------------------------- 107 (279)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEEecCccccccCccccccCccccccccccccccCCCCCHHHHHHhhcCCcccCCCCCCCCccccccceEEEEEE
Q 003370 619 KHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLD 698 (825)
Q Consensus 619 ~~~~i~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~w~C~~Ck~~~~A~Kk~~ 698 (825)
....+|++||+.|+++|.|.+++.|.|++|++ |+|+..
T Consensus 108 ---------------------------------------~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~---a~k~~~ 145 (279)
T cd02667 108 ---------------------------------------KSECSIESCLKQFTEVEILEGNNKFACENCTK---AKKQYL 145 (279)
T ss_pred ---------------------------------------CCCCCHHHHHHhhcCeeEecCCCcccCCccCc---eeeEeE
Confidence 12358999999999999999999999999988 999999
Q ss_pred eeeCCCeEEEEEeeeEeecc-cccccceeeeccCcccccccccccC-----CCCceEEEEEEEEEeecCCCCCeEEEEEe
Q 003370 699 LWMLPDVLVFHLKRFSYSRY-LKNKLDTFVNFPILNLDLSKYMKSK-----DGESYVYDLFAISNHYGGLGGGHYTAYAK 772 (825)
Q Consensus 699 i~~lP~iLiIhLKRF~~~~~-~~~Ki~~~V~FPl~~LDls~~~~~~-----~~~~~~YdL~AVv~H~G~l~gGHYtAy~k 772 (825)
|.++|+||+||||||.++.. ...|+++.|+|| +.|||++|+..+ .....+|+|+|||+|.|+..+|||+||+|
T Consensus 146 i~~~P~~Lii~LkRF~~~~~~~~~Ki~~~v~fP-~~Ldl~~~~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~GHY~a~v~ 224 (279)
T cd02667 146 ISKLPPVLVIHLKRFQQPRSANLRKVSRHVSFP-EILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTMRSGHYVAYVK 224 (279)
T ss_pred hhhCCCeEEEEEeccccCcccCceecCceEeCC-CccchhhccCccccccccCCCceEEEEEEEEEeCCCCCCEeEEEEE
Confidence 99999999999999999854 678999999999 599999999762 22467999999999999889999999999
Q ss_pred eCC---------------------CCcEEEeCCCceeecCcCcccCCCeEEEEEE
Q 003370 773 LID---------------------ENRWYHFDDSHVSPVSEGDIKTSAAYVLFYR 806 (825)
Q Consensus 773 ~~~---------------------~~~Wy~fnDs~V~~v~~~~v~s~~AYvLFY~ 806 (825)
... +++||+|||+.|+++++++|.+.+|||||||
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~dD~~V~~v~~~~v~~~~aYiLfYe 279 (279)
T cd02667 225 VRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279 (279)
T ss_pred cCccccccccccccccccccCCCCCCcEEEEECCccEECCHHHhccCCcEEEEeC
Confidence 743 7899999999999999999999999999996
No 10
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.5e-60 Score=539.68 Aligned_cols=304 Identities=30% Similarity=0.448 Sum_probs=254.1
Q ss_pred CCCcccceecCCCchhHHHHHHHHhCChHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHHHhcCC--CCccChHHH
Q 003370 213 EKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSG--RAAVAPRAF 290 (825)
Q Consensus 213 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~--~~~i~p~~~ 290 (825)
..+|++||.|+||||||||+||||+|+|+||++|++..... +. ......++.+|+.++++||++. +..++|..|
T Consensus 115 ~~~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~-~~---~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~f 190 (440)
T cd02669 115 YLPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYE-NI---KDRKSELVKRLSELIRKIWNPRNFKGHVSPHEL 190 (440)
T ss_pred ccCCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccc-cc---cCCCcHHHHHHHHHHHHHhccccCCCccCHHHH
Confidence 46899999999999999999999999999999999752111 00 1234579999999999999865 578999999
Q ss_pred HHHHhhhC-CCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCChHHHHHHHHhhccccCCCcccccceEE
Q 003370 291 KGKLARFA-PQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQ 369 (825)
Q Consensus 291 ~~~l~~~~-~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~d~~~~~~~~~a~~~w~~~~~~~~SiI~~lF~G~ 369 (825)
+.++.... +.|.+++||||||||.+|||.||++++... ..+.++|.++|+|+
T Consensus 191 l~~l~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~---------------------------~~~~~ii~~~F~G~ 243 (440)
T cd02669 191 LQAVSKVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSK---------------------------KPNSSIIHDCFQGK 243 (440)
T ss_pred HHHHHhhcccccCCcccCCHHHHHHHHHHHHHHHhccCC---------------------------CCCCCcceeccCce
Confidence 99998765 579999999999999999999999986431 23568999999999
Q ss_pred EEEEEEcCCCC---------------CeeeeecCCeeEEEeCCCCceeeeEEEEEecCCCCCCcceEEEecCCcChHHHH
Q 003370 370 YKSTLVCPVCS---------------KVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLI 434 (825)
Q Consensus 370 ~~s~i~C~~C~---------------~~S~~~e~F~~LsLpip~~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~ 434 (825)
++++++|..|. ..+.+.+||++|||+||.....
T Consensus 244 l~~~~~c~~~~~~~~~~~~~~~~c~~~~s~~~~pF~~LsLdip~~~~~-------------------------------- 291 (440)
T cd02669 244 VQIETQKIKPHAEEEGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPPLF-------------------------------- 291 (440)
T ss_pred EEEEEEeecccccccccccccccccccceeeeccceEEEecCCCCccc--------------------------------
Confidence 99999987654 3567899999999999853200
Q ss_pred HHHHhhccCCcccceeEEEeecceeeEeecCcccccccccCCCcEEEEEeccCCCCceeEEEeeecccccccccccCCcc
Q 003370 435 LALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSER 514 (825)
Q Consensus 435 ~~l~~~~~~~~~~~l~~~e~~~~~~~k~~~d~~~~~~~i~~~d~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (825)
.+..
T Consensus 292 -----------------------------~~~~----------------------------------------------- 295 (440)
T cd02669 292 -----------------------------KDGN----------------------------------------------- 295 (440)
T ss_pred -----------------------------cccc-----------------------------------------------
Confidence 0000
Q ss_pred eeccccEEEEecCCCCCHHHHHHHHHHHccccccccccccccCCCCCCCCcccccccccCCCCCccccccccccccccee
Q 003370 515 KLFGAPLVTYLEEEHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSF 594 (825)
Q Consensus 515 ~~fg~P~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (825)
T Consensus 296 -------------------------------------------------------------------------------- 295 (440)
T cd02669 296 -------------------------------------------------------------------------------- 295 (440)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCCCccCCCccCCCCCCCCceEEEEEecCccccccCccccccCccccccccccccccCCCCCHHHHHHhhcCCc
Q 003370 595 QLSLTDERISSCKPIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEE 674 (825)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E 674 (825)
....-+.++|++||+.
T Consensus 296 -----------------------------------------------------------~~~~l~~~~l~e~L~k----- 311 (440)
T cd02669 296 -----------------------------------------------------------EENIIPQVPLKQLLKK----- 311 (440)
T ss_pred -----------------------------------------------------------cccccCcccHHHHHHh-----
Confidence 0000123689999976
Q ss_pred ccCCCCCCCCccccccceEEEEEEeeeCCCeEEEEEeeeEeecccccccceeeeccCcccccccccccCC---CCceEEE
Q 003370 675 PLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKD---GESYVYD 751 (825)
Q Consensus 675 ~L~~~d~w~C~~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~~~~~---~~~~~Yd 751 (825)
|.|+.|+..+.|+|++.|++||+|||||||||.++...+.|+.+.|+||++.|||++|+..+. ..+.+|+
T Consensus 312 -------y~~~~c~~~~~a~k~~~I~~LP~vLiihLKRF~~~~~~~~K~~t~V~FP~~~LDm~~y~~~~~~~~~~~~~Y~ 384 (440)
T cd02669 312 -------YDGKTETELKDSLKRYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFDKPSLNLSTKYN 384 (440)
T ss_pred -------cCCccceecccceEEEEEeeCCcEEEEEEecccCCCCccccCCCEEECCCCccchhhhhCccccccCCCceEE
Confidence 457788889999999999999999999999999988778999999999987799999996432 3568999
Q ss_pred EEEEEEeecCC-CCCeEEEEEeeCCCCcEEEeCCCceeecCcCcccCCCeEEEEEE
Q 003370 752 LFAISNHYGGL-GGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYR 806 (825)
Q Consensus 752 L~AVv~H~G~l-~gGHYtAy~k~~~~~~Wy~fnDs~V~~v~~~~v~s~~AYvLFY~ 806 (825)
|+|||+|.|++ ++|||+||+|+..+|+||.|||+.|+++++++|..++||||||+
T Consensus 385 L~avI~H~G~~~~sGHY~a~v~~~~~~~W~~fdD~~V~~v~~~~v~~~eaYll~Y~ 440 (440)
T cd02669 385 LVANIVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLNVKEVLPQLIFLSESYIQIWE 440 (440)
T ss_pred EEEEEEEeccCCCCeeEEEEEEcCCCCeEEEEECCeeeEcCHHHhccCCceEEEeC
Confidence 99999999987 99999999998678999999999999999999999999999996
No 11
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-61 Score=548.35 Aligned_cols=344 Identities=43% Similarity=0.711 Sum_probs=299.2
Q ss_pred CCCCcccceecCCCchhHHHHHHHHhCChHHHHHHHhc-CccccccCCCCCchhHHHHHHHHHHHHHhcC-CCCccChHH
Q 003370 212 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSS-GRAAVAPRA 289 (825)
Q Consensus 212 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~-~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~-~~~~i~p~~ 289 (825)
....|.+||.|+|||||||++||||+.++.||..+++. |.+.++.++..+ ...+..++..++..+|.+ ...++.|+.
T Consensus 296 ~~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~-~~~l~~~~~~~l~~~~~~~~~~s~~P~~ 374 (653)
T KOG1868|consen 296 TDVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFG-AEELESACAKLLQKLWHGHGQFSVLPRR 374 (653)
T ss_pred ccccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCccc-chhHHHHHHHhhhhhccCCCceecCcHH
Confidence 45688999999999999999999999999999888877 888887444433 346777777777777765 667899999
Q ss_pred HHHHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCCcc-ccc-----CCCCCChHHHHHHHHhhccccCCCccc
Q 003370 290 FKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYI-EMK-----DSGGRPDEEVANECWKNHKARNDSLIV 363 (825)
Q Consensus 290 ~~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~-~~~-----d~~~~~~~~~a~~~w~~~~~~~~SiI~ 363 (825)
|+..++++.+.|+++.|||||||+.+++|.||++++.....+.. ... .....++...+...|.++....++.|.
T Consensus 375 f~~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i~ 454 (653)
T KOG1868|consen 375 FIRVLKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKIG 454 (653)
T ss_pred HHHHHhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHHH
Confidence 99999999999999999999999999999999999987543211 111 111234445566789888888888899
Q ss_pred ccceEEEEEEEEcCCCCCeeeeecCCeeEEEeCCCCceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccC
Q 003370 364 DVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCL 443 (825)
Q Consensus 364 ~lF~G~~~s~i~C~~C~~~S~~~e~F~~LsLpip~~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~ 443 (825)
++|.||+++.++|..|++.|.+|++|++|+||||.....
T Consensus 455 ~lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~----------------------------------------- 493 (653)
T KOG1868|consen 455 DLFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFA----------------------------------------- 493 (653)
T ss_pred HHHHHHHHhheehhhcCCcceeeecceeeEEeccccccc-----------------------------------------
Confidence 999999999999999999999999999999999843100
Q ss_pred CcccceeEEEeecceeeEeecCcccccccccCCCcEEEEEeccCCCCceeEEEeeecccccccccccCCcceeccccEEE
Q 003370 444 KIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVT 523 (825)
Q Consensus 444 ~~~~~l~~~e~~~~~~~k~~~d~~~~~~~i~~~d~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~ 523 (825)
T Consensus 494 -------------------------------------------------------------------------------- 493 (653)
T KOG1868|consen 494 -------------------------------------------------------------------------------- 493 (653)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCCHHHHHHHHHHHccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeEEEEecCCC
Q 003370 524 YLEEEHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERI 603 (825)
Q Consensus 524 ~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (825)
T Consensus 494 -------------------------------------------------------------------------------- 493 (653)
T KOG1868|consen 494 -------------------------------------------------------------------------------- 493 (653)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccCCCccCCCCCCCCceEEEEEecCccccccCccccccCccccccccccccccCCCCCHHHHHHhhcCCcccCCCCCCC
Q 003370 604 SSCKPIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWY 683 (825)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~i~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~w~ 683 (825)
...++|.+|++.||+.|.|+++++|.
T Consensus 494 ------------------------------------------------------~~~~~L~~C~~~ft~~ekle~~~~w~ 519 (653)
T KOG1868|consen 494 ------------------------------------------------------GGKVSLEDCLSLFTKEEKLEGDEAWL 519 (653)
T ss_pred ------------------------------------------------------ccccchHhhhccccchhhcccccccC
Confidence 11368999999999999999999999
Q ss_pred CccccccceEE--EEEEeeeCCCeEEEEEeeeEeecccccccceeeeccCcccccccccccCCCCceEEEEEEEEEeecC
Q 003370 684 CPQCKEHRQAT--KKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGG 761 (825)
Q Consensus 684 C~~Ck~~~~A~--Kk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVv~H~G~ 761 (825)
||+|++.+.++ |++.||+||+|||||||||.+++.+..|..+.|+||+..+|+.+++..+.+....|+||||+||+|+
T Consensus 520 Cp~c~~~~~~~~lK~~~i~~lp~iLiihL~Rf~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~Gt 599 (653)
T KOG1868|consen 520 CPRCKHKESSKTLKKLTILRLPKILIIHLKRFSSDGNSFNKLSTGVDFPLREADLSPRFAEKGNNPKSYRLYAVVNHSGT 599 (653)
T ss_pred CccccCcccccccceeeeecCCHHHHHHHHHhccCcccccccceeeccchHhhhhchhccccCCCccceeeEEEEeccCc
Confidence 99999999986 9999999999999999999999888999999999999999999988888777788999999999999
Q ss_pred CCCCeEEEEEeeCCCCcEEEeCCCceeecCcCcccCCCeEEEEEEEecCC
Q 003370 762 LGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRVKSK 811 (825)
Q Consensus 762 l~gGHYtAy~k~~~~~~Wy~fnDs~V~~v~~~~v~s~~AYvLFY~R~~~~ 811 (825)
++||||||||+....+.|+.|||+.|+.+++.++.+++||||||+|.+..
T Consensus 600 l~sGHYta~~~~~~~~~W~~fdDs~Vs~~~~~~~~~s~aYIlFY~~~~~~ 649 (653)
T KOG1868|consen 600 LNSGHYTAYVYKNEKQRWFTFDDSEVSPISETDVGSSSAYILFYERLGIF 649 (653)
T ss_pred ccCCceEEEEeecCCCceEEecCeeeeccccccccCCCceEEEeecCCcc
Confidence 99999999998767899999999999999999999999999999998754
No 12
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.8e-59 Score=516.04 Aligned_cols=277 Identities=34% Similarity=0.549 Sum_probs=240.1
Q ss_pred ceecCCCchhHHHHHHHHhCChHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHH-HHHHHhhh
Q 003370 219 GLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRA-FKGKLARF 297 (825)
Q Consensus 219 GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~-~~~~l~~~ 297 (825)
||.|+||||||||+||||+++|+||+++++...... .....+..+|+.|+..|..+...++.|.. |+.++.
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~------~~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~l~~~~-- 72 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRL------GDSQSVMKKLQLLQAHLMHTQRRAEAPPDYFLEASR-- 72 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCcccc------CCcchHHHHHHHHHHHHhhcCCcccCCHHHHHHHhc--
Confidence 899999999999999999999999999987522111 11235778899999888776667777776 666543
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCChHHHHHHHHhhccccCCCcccccceEEEEEEEEcC
Q 003370 298 APQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCP 377 (825)
Q Consensus 298 ~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~d~~~~~~~~~a~~~w~~~~~~~~SiI~~lF~G~~~s~i~C~ 377 (825)
.+.|..+.|||||||+.+|||.|+. +|.++|.|++.++++|.
T Consensus 73 ~~~f~~~~QqDa~EFl~~lLd~l~~--------------------------------------~i~~~F~G~~~~~i~C~ 114 (327)
T cd02664 73 PPWFTPGSQQDCSEYLRYLLDRLHT--------------------------------------LIEKMFGGKLSTTIRCL 114 (327)
T ss_pred ccccCCCCcCCHHHHHHHHHHHHHH--------------------------------------HHHhhCcEEeEeEEEcC
Confidence 5789999999999999999999981 37889999999999999
Q ss_pred CCCCeeeeecCCeeEEEeCCCCceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeEEEeecc
Q 003370 378 VCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNH 457 (825)
Q Consensus 378 ~C~~~S~~~e~F~~LsLpip~~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~ 457 (825)
.|++++.+.|+|.+|+|+||
T Consensus 115 ~C~~~s~~~e~f~~l~L~i~------------------------------------------------------------ 134 (327)
T cd02664 115 NCNSTSARTERFRDLDLSFP------------------------------------------------------------ 134 (327)
T ss_pred CCCCEecccccceeeecCCC------------------------------------------------------------
Confidence 99999999999999998863
Q ss_pred eeeEeecCcccccccccCCCcEEEEEeccCCCCceeEEEeeecccccccccccCCcceeccccEEEEecCCCCCHHHHHH
Q 003370 458 QIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADIDI 537 (825)
Q Consensus 458 ~~~k~~~d~~~~~~~i~~~d~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~~l~~ 537 (825)
T Consensus 135 -------------------------------------------------------------------------------- 134 (327)
T cd02664 135 -------------------------------------------------------------------------------- 134 (327)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeEEEEecCCCCccCCCccCCCCCC
Q 003370 538 AVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSILKP 617 (825)
Q Consensus 538 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (825)
T Consensus 135 -------------------------------------------------------------------------------- 134 (327)
T cd02664 135 -------------------------------------------------------------------------------- 134 (327)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceEEEEEecCccccccCccccccCccccccccccccccCCCCCHHHHHHhhcCCcccCCCCCCCCccccccceEEEEE
Q 003370 618 GKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKL 697 (825)
Q Consensus 618 ~~~~~i~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~w~C~~Ck~~~~A~Kk~ 697 (825)
+|++||+.|+++|.|.+++.|+|++|++++.|+|++
T Consensus 135 --------------------------------------------sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~k~~ 170 (327)
T cd02664 135 --------------------------------------------SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEM 170 (327)
T ss_pred --------------------------------------------CHHHHHHHhcCeeEccCCCceeCCccCCccceeEEE
Confidence 467899999999999999999999999999999999
Q ss_pred EeeeCCCeEEEEEeeeEeec--ccccccceeeeccCcccccccccccC-------------------CCCceEEEEEEEE
Q 003370 698 DLWMLPDVLVFHLKRFSYSR--YLKNKLDTFVNFPILNLDLSKYMKSK-------------------DGESYVYDLFAIS 756 (825)
Q Consensus 698 ~i~~lP~iLiIhLKRF~~~~--~~~~Ki~~~V~FPl~~LDls~~~~~~-------------------~~~~~~YdL~AVv 756 (825)
.|.++|+|||||||||.|+. ..+.|+++.|.||. .|||..|+... ......|+|+|||
T Consensus 171 ~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~-~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~Vi 249 (327)
T cd02664 171 KVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINE-VLSLPVRVESKSSESPLEKKEEESGDDGELVTRQVHYRLYAVV 249 (327)
T ss_pred EcccCChhhEEEeeeeEEccccCcceecCceEecCC-EEecCccccccccccccccccccccccccccCCCceEEEEEEE
Confidence 99999999999999999985 35689999999995 89999997421 1245789999999
Q ss_pred Eeec-CCCCCeEEEEEeeCC--------------------CCcEEEeCCCceeecCcCcccC-------CCeEEEEEE
Q 003370 757 NHYG-GLGGGHYTAYAKLID--------------------ENRWYHFDDSHVSPVSEGDIKT-------SAAYVLFYR 806 (825)
Q Consensus 757 ~H~G-~l~gGHYtAy~k~~~--------------------~~~Wy~fnDs~V~~v~~~~v~s-------~~AYvLFY~ 806 (825)
+|.| ++++||||||+|... +++||.|||+.|+++++++|.+ ..||||||+
T Consensus 250 ~H~G~~~~~GHY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~~~~~~v~~~~~~~~~~~aYlLfY~ 327 (327)
T cd02664 250 VHSGYSSESGHYFTYARDQTDADSTGQECPEPKDAEENDESKNWYLFNDSRVTFSSFESVQNVTSRFPKDTPYILFYE 327 (327)
T ss_pred EEccCCCCCcceEEEEecCCccccccccccccccccccCCCCCEEEEeCCceEECCHHHHHHhhCCCCCCCEEEEEeC
Confidence 9999 589999999999743 4899999999999999998875 899999996
No 13
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.7e-58 Score=502.96 Aligned_cols=293 Identities=29% Similarity=0.482 Sum_probs=245.7
Q ss_pred ceecCCCchhHHHHHHHHhCChHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHHHhcCC--------------CCc
Q 003370 219 GLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSG--------------RAA 284 (825)
Q Consensus 219 GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~--------------~~~ 284 (825)
||.|+||||||||+||||+|+|+||++|++...... .+.....+++.++|++|+..|+++. ..+
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~--~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 78 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFP--SDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVG 78 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccC--CCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccc
Confidence 999999999999999999999999999986311111 1122335679999999999998753 246
Q ss_pred cChHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCChHHHHHHHHhhccccCCCcccc
Q 003370 285 VAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVD 364 (825)
Q Consensus 285 i~p~~~~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~d~~~~~~~~~a~~~w~~~~~~~~SiI~~ 364 (825)
+.|..|+.+++...|.|.++.|||||||+.+|||.|++++... ..+.+.+
T Consensus 79 i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~------------------------------~~~~~~~ 128 (311)
T cd02658 79 IKPSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKN------------------------------LGLNPND 128 (311)
T ss_pred cCcHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhccc------------------------------ccCCchh
Confidence 8999999999999999999999999999999999999987521 1234788
Q ss_pred cceEEEEEEEEcCCCCCeeeeecCCeeEEEeCCCCceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCC
Q 003370 365 VFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLK 444 (825)
Q Consensus 365 lF~G~~~s~i~C~~C~~~S~~~e~F~~LsLpip~~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~ 444 (825)
+|.|.++++++|..|++++.+.|+|.+|+|+||.......
T Consensus 129 ~f~~~~~~~i~C~~C~~~s~~~e~~~~lsL~l~~~~~~~~---------------------------------------- 168 (311)
T cd02658 129 LFKFMIEDRLECLSCKKVKYTSELSEILSLPVPKDEATEK---------------------------------------- 168 (311)
T ss_pred heEEEeeEEEEcCCCCCEEEeecceeEEeeeccccccccc----------------------------------------
Confidence 9999999999999999999999999999999985320000
Q ss_pred cccceeEEEeecceeeEeecCcccccccccCCCcEEEEEeccCCCCceeEEEeeecccccccccccCCcceeccccEEEE
Q 003370 445 IDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTY 524 (825)
Q Consensus 445 ~~~~l~~~e~~~~~~~k~~~d~~~~~~~i~~~d~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~ 524 (825)
T Consensus 169 -------------------------------------------------------------------------------- 168 (311)
T cd02658 169 -------------------------------------------------------------------------------- 168 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCCHHHHHHHHHHHccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeEEEEecCCCC
Q 003370 525 LEEEHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERIS 604 (825)
Q Consensus 525 ~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (825)
++
T Consensus 169 -----------------------------------~~------------------------------------------- 170 (311)
T cd02658 169 -----------------------------------EE------------------------------------------- 170 (311)
T ss_pred -----------------------------------cc-------------------------------------------
Confidence 00
Q ss_pred ccCCCccCCCCCCCCceEEEEEecCccccccCccccccCccccccccccccccCCCCCHHHHHHhhcCCcccCCCCCCCC
Q 003370 605 SCKPIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYC 684 (825)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~i~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~w~C 684 (825)
........+|++||+.|+++|.++ ++|
T Consensus 171 -------------------------------------------------~~~~~~~~sl~~~L~~~~~~e~i~----~~C 197 (311)
T cd02658 171 -------------------------------------------------GELVYEPVPLEDCLKAYFAPETIE----DFC 197 (311)
T ss_pred -------------------------------------------------ccccCCCCCHHHHHHHHcCccccc----ccc
Confidence 000023469999999999999996 589
Q ss_pred ccccccceEEEEEEeeeCCCeEEEEEeeeEee-cccccccceeeeccCcccccccccccCCCCceEEEEEEEEEeec-CC
Q 003370 685 PQCKEHRQATKKLDLWMLPDVLVFHLKRFSYS-RYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYG-GL 762 (825)
Q Consensus 685 ~~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~-~~~~~Ki~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVv~H~G-~l 762 (825)
++|++++.|+|+..|.++|+||+||||||.++ .+...|+++.|.||. .| ....|+|+|||+|.| ++
T Consensus 198 ~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~Ki~~~v~~p~-~l-----------~~~~Y~L~~vI~H~G~~~ 265 (311)
T cd02658 198 STCKEKTTATKTTGFKTFPDYLVINMKRFQLLENWVPKKLDVPIDVPE-EL-----------GPGKYELIAFISHKGTSV 265 (311)
T ss_pred cCCCCcccEEEEEEeecCCceEEEEeEEEEecCCCceEeeccccccCC-cC-----------CCCcEEEEEEEEccCCCC
Confidence 99999999999999999999999999999995 456789999999994 55 235799999999999 59
Q ss_pred CCCeEEEEEeeC--CCCcEEEeCCCceeecCcCcccCCCeEEEEEE
Q 003370 763 GGGHYTAYAKLI--DENRWYHFDDSHVSPVSEGDIKTSAAYVLFYR 806 (825)
Q Consensus 763 ~gGHYtAy~k~~--~~~~Wy~fnDs~V~~v~~~~v~s~~AYvLFY~ 806 (825)
++|||+||+|.. .+++||.|||+.|+++++.+|.+..||||||+
T Consensus 266 ~~GHY~~~vk~~~~~~~~W~~fnD~~V~~~~~~~~~~~~~YilfY~ 311 (311)
T cd02658 266 HSGHYVAHIKKEIDGEGKWVLFNDEKVVASQDPPEMKKLGYIYFYQ 311 (311)
T ss_pred CCcceEEEEeCCCCCCCCEEEecCceeEECCcccccCCcceEEEEC
Confidence 999999999974 34999999999999999999999999999996
No 14
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.5e-58 Score=501.80 Aligned_cols=288 Identities=31% Similarity=0.453 Sum_probs=248.9
Q ss_pred ceecCCCchhHHHHHHHHhCChHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHHHHhhhC
Q 003370 219 GLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFA 298 (825)
Q Consensus 219 GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l~~~~ 298 (825)
||.|+||||||||+||||+|+|+|++++++.-.. . .........++.+|+.|+..|+.+. ..++|..|+..++...
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~-~--~~~~~~~~~~~~~l~~L~~~l~~~~-~~i~p~~~~~~l~~~~ 76 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPA-R--RGANQSSDNLTNALRDLFDTMDKKQ-EPVPPIEFLQLLRMAF 76 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhcccc-c--cccccchhHHHHHHHHHHHHHHhCC-CcCCcHHHHHHHHHHC
Confidence 8999999999999999999999999999875211 0 0122345689999999999999865 4899999999999999
Q ss_pred CCCC------CCCCCCHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCChHHHHHHHHhhccccCCCcccccceEEEEE
Q 003370 299 PQFS------GYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKS 372 (825)
Q Consensus 299 ~~F~------~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~d~~~~~~~~~a~~~w~~~~~~~~SiI~~lF~G~~~s 372 (825)
+.|. +++|||||||+.+|||.|+++++.. ..+.++|.++|+|++.+
T Consensus 77 ~~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~----------------------------~~~~~~i~~~F~g~~~~ 128 (305)
T cd02657 77 PQFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGA----------------------------GSKGSFIDQLFGIELET 128 (305)
T ss_pred cCcccccCCCCccccCHHHHHHHHHHHHHHHhccc----------------------------CCCCcHHHHhhceEEEE
Confidence 9994 5699999999999999999998541 12356799999999999
Q ss_pred EEEcCCCC-CeeeeecCCeeEEEeCCCCceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeE
Q 003370 373 TLVCPVCS-KVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLL 451 (825)
Q Consensus 373 ~i~C~~C~-~~S~~~e~F~~LsLpip~~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~ 451 (825)
.++|..|+ +++.++|+|++|+|+||...
T Consensus 129 ~~~C~~C~~~~~~~~e~f~~Lsl~i~~~~--------------------------------------------------- 157 (305)
T cd02657 129 KMKCTESPDEEEVSTESEYKLQCHISITT--------------------------------------------------- 157 (305)
T ss_pred EEEcCCCCCCCccccccceEEEeecCCCc---------------------------------------------------
Confidence 99999999 89999999999999997321
Q ss_pred EEeecceeeEeecCcccccccccCCCcEEEEEeccCCCCceeEEEeeecccccccccccCCcceeccccEEEEecCCCCC
Q 003370 452 AEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLS 531 (825)
Q Consensus 452 ~e~~~~~~~k~~~d~~~~~~~i~~~d~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~ 531 (825)
T Consensus 158 -------------------------------------------------------------------------------- 157 (305)
T cd02657 158 -------------------------------------------------------------------------------- 157 (305)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeEEEEecCCCCccCCCcc
Q 003370 532 GADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQK 611 (825)
Q Consensus 532 ~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (825)
T Consensus 158 -------------------------------------------------------------------------------- 157 (305)
T cd02657 158 -------------------------------------------------------------------------------- 157 (305)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCceEEEEEecCccccccCccccccCccccccccccccccCCCCCHHHHHHhhcCCcccCCCCCCCCccccccc
Q 003370 612 DSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHR 691 (825)
Q Consensus 612 ~~~~~~~~~~~i~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~w~C~~Ck~~~ 691 (825)
...+|++||+.++++|.. ..|+.|+...
T Consensus 158 -----------------------------------------------~~~~l~~~L~~~~~~~~~-----~~~~~~~~~~ 185 (305)
T cd02657 158 -----------------------------------------------EVNYLQDGLKKGLEEEIE-----KHSPTLGRDA 185 (305)
T ss_pred -----------------------------------------------ccccHHHHHHHhhhhhhh-----hcCcccCCCc
Confidence 012789999999987764 4799999999
Q ss_pred eEEEEEEeeeCCCeEEEEEeeeEeecc--cccccceeeeccCcccccccccccCCCCceEEEEEEEEEeec-CCCCCeEE
Q 003370 692 QATKKLDLWMLPDVLVFHLKRFSYSRY--LKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYG-GLGGGHYT 768 (825)
Q Consensus 692 ~A~Kk~~i~~lP~iLiIhLKRF~~~~~--~~~Ki~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVv~H~G-~l~gGHYt 768 (825)
.++|+..|.++|++|+||||||.|+.. ...|+++.|.||. .|||++|+. .+.+|+|+|||+|.| ++++|||+
T Consensus 186 ~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fP~-~Ldl~~~~~----~~~~Y~L~~vI~H~G~~~~~GHY~ 260 (305)
T cd02657 186 IYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFPF-ELDLYELCT----PSGYYELVAVITHQGRSADSGHYV 260 (305)
T ss_pred eEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEECCc-eEecccccC----CCCcEEEEEEEEecCCCCCCcEEE
Confidence 999999999999999999999999854 4679999999995 899999987 346899999999999 69999999
Q ss_pred EEEeeCCCCcEEEeCCCceeecCcCcccC-------CCeEEEEEE
Q 003370 769 AYAKLIDENRWYHFDDSHVSPVSEGDIKT-------SAAYVLFYR 806 (825)
Q Consensus 769 Ay~k~~~~~~Wy~fnDs~V~~v~~~~v~s-------~~AYvLFY~ 806 (825)
||+|...+++||.|||+.|+++++++|.. .+|||||||
T Consensus 261 ~~~~~~~~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~aYiL~Y~ 305 (305)
T cd02657 261 AWVRRKNDGKWIKFDDDKVSEVTEEDILKLSGGGDWHIAYILLYK 305 (305)
T ss_pred EEEEcCCCCeEEEEECCceEEeCHHHHHhhcCCCCCceEEEEEEC
Confidence 99998555999999999999999999864 699999996
No 15
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.2e-57 Score=494.46 Aligned_cols=301 Identities=37% Similarity=0.615 Sum_probs=263.9
Q ss_pred ccceecCCCchhHHHHHHHHhCChHHHHHHHhc-CccccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHHHHh
Q 003370 217 LAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLA 295 (825)
Q Consensus 217 ~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~-~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l~ 295 (825)
++||.|+||||||||+||+|+|+|+|++++++. ...... ....++.++|+.++.+|+.+....+.|..|..++.
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~l~ 75 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCC-----NEGFCMMCALEAHVERALASSGPGSAPRIFSSNLK 75 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhcc-----CCcchHHHHHHHHHHHHHhCCCCccChHHHHHHHH
Confidence 589999999999999999999999999999864 211111 12346889999999999888888999999999999
Q ss_pred hhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCChHHHHHHHHhhccccCCCcccccceEEEEEEEE
Q 003370 296 RFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLV 375 (825)
Q Consensus 296 ~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~d~~~~~~~~~a~~~w~~~~~~~~SiI~~lF~G~~~s~i~ 375 (825)
...+.|..+.||||+|||.+|||.||+++......... ........++|.++|+|+++++++
T Consensus 76 ~~~~~f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~------------------~~~~~~~~~~i~~~F~g~~~~~~~ 137 (304)
T cd02661 76 QISKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKA------------------VDPSSQETTLVQQIFGGYLRSQVK 137 (304)
T ss_pred HHHHhhcCcchhhHHHHHHHHHHHHHHHHhhhcccccc------------------cCccccCCChhhhcCCcEEeeeEE
Confidence 99999999999999999999999999887653322100 011234467899999999999999
Q ss_pred cCCCCCeeeeecCCeeEEEeCCCCceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeEEEee
Q 003370 376 CPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVY 455 (825)
Q Consensus 376 C~~C~~~S~~~e~F~~LsLpip~~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~ 455 (825)
|..|++.+.++|+|+.|+|+||..
T Consensus 138 C~~C~~~s~~~e~~~~l~l~i~~~-------------------------------------------------------- 161 (304)
T cd02661 138 CLNCKHVSNTYDPFLDLSLDIKGA-------------------------------------------------------- 161 (304)
T ss_pred eCCCCCCcCccccceeeeeecCCC--------------------------------------------------------
Confidence 999999999999999999998621
Q ss_pred cceeeEeecCcccccccccCCCcEEEEEeccCCCCceeEEEeeecccccccccccCCcceeccccEEEEecCCCCCHHHH
Q 003370 456 NHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADI 535 (825)
Q Consensus 456 ~~~~~k~~~d~~~~~~~i~~~d~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~~l 535 (825)
T Consensus 162 -------------------------------------------------------------------------------- 161 (304)
T cd02661 162 -------------------------------------------------------------------------------- 161 (304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeEEEEecCCCCccCCCccCCCC
Q 003370 536 DIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSIL 615 (825)
Q Consensus 536 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (825)
T Consensus 162 -------------------------------------------------------------------------------- 161 (304)
T cd02661 162 -------------------------------------------------------------------------------- 161 (304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCceEEEEEecCccccccCccccccCccccccccccccccCCCCCHHHHHHhhcCCcccCCCCCCCCccccccceEEE
Q 003370 616 KPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATK 695 (825)
Q Consensus 616 ~~~~~~~i~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~w~C~~Ck~~~~A~K 695 (825)
.+|++||+.|+.+|.+++++.|.|++|++.+.++|
T Consensus 162 ---------------------------------------------~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~ 196 (304)
T cd02661 162 ---------------------------------------------DSLEDALEQFTKPEQLDGENKYKCERCKKKVKASK 196 (304)
T ss_pred ---------------------------------------------CcHHHHHHHhcCceeeCCCCCeeCCCCCCccceEE
Confidence 26889999999999999999999999999999999
Q ss_pred EEEeeeCCCeEEEEEeeeEeecccccccceeeeccCcccccccccccCCCCceEEEEEEEEEeecC-CCCCeEEEEEeeC
Q 003370 696 KLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGG-LGGGHYTAYAKLI 774 (825)
Q Consensus 696 k~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVv~H~G~-l~gGHYtAy~k~~ 774 (825)
+..|.++|++|+|||+||.++ ...|+++.|.|| +.|||.+|+.........|+|+|||+|+|. +++|||+||+|+
T Consensus 197 ~~~i~~~P~iL~i~l~Rf~~~--~~~Ki~~~v~f~-~~L~l~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~- 272 (304)
T cd02661 197 QLTIHRAPNVLTIHLKRFSNF--RGGKINKQISFP-ETLDLSPYMSQPNDGPLKYKLYAVLVHSGFSPHSGHYYCYVKS- 272 (304)
T ss_pred EEEEecCCcEEEEEEeccccC--CccccCCeEecC-CeechhhccccCCCCCceeeEEEEEEECCCCCCCcCCEEEEEC-
Confidence 999999999999999999988 568999999999 589999999876667789999999999995 599999999997
Q ss_pred CCCcEEEeCCCceeecCcCcccCCCeEEEEE
Q 003370 775 DENRWYHFDDSHVSPVSEGDIKTSAAYVLFY 805 (825)
Q Consensus 775 ~~~~Wy~fnDs~V~~v~~~~v~s~~AYvLFY 805 (825)
.+++||+|||+.|+++++++|.+..||||||
T Consensus 273 ~~~~W~~~nD~~V~~v~~~~v~~~~aYil~Y 303 (304)
T cd02661 273 SNGKWYNMDDSKVSPVSIETVLSQKAYILFY 303 (304)
T ss_pred CCCCEEEEeCCeeEECCHHHhcCCCcEEEEe
Confidence 6889999999999999999999999999999
No 16
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.7e-57 Score=498.45 Aligned_cols=298 Identities=31% Similarity=0.538 Sum_probs=254.1
Q ss_pred cccceecCCCchhHHHHHHHHhCChHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHHHHh
Q 003370 216 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLA 295 (825)
Q Consensus 216 g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l~ 295 (825)
|++||.|+||||||||+||||+|+|+|++++++.... ........+..+|+.|+..|..+....+.|..+.....
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~-----~~~~~~~~~~~~l~~lf~~~~~~~~~~~~~~~~~~~~~ 75 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPT-----EDDDDNKSVPLALQRLFLFLQLSESPVKTTELTDKTRS 75 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCc-----ccCcccccHHHHHHHHHHHHHhCCccccCcchhheecc
Confidence 7899999999999999999999999999999875211 01112356899999999999987766667766542222
Q ss_pred hhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCChHHHHHHHHhhccccCCCcccccceEEEEEEEE
Q 003370 296 RFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLV 375 (825)
Q Consensus 296 ~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~d~~~~~~~~~a~~~w~~~~~~~~SiI~~lF~G~~~s~i~ 375 (825)
.....|..++||||+||+.+||+.|+++++.. ...++|.++|.|.+.+.++
T Consensus 76 ~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~-----------------------------~~~~~i~~lF~g~~~~~~~ 126 (334)
T cd02659 76 FGWDSLNTFEQHDVQEFFRVLFDKLEEKLKGT-----------------------------GQEGLIKNLFGGKLVNYII 126 (334)
T ss_pred CCCCCCCcccchhHHHHHHHHHHHHHHHhccC-----------------------------cccchhhhhCceEEEeEEE
Confidence 22356888999999999999999999887531 1135699999999999999
Q ss_pred cCCCCCeeeeecCCeeEEEeCCCCceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeEEEee
Q 003370 376 CPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVY 455 (825)
Q Consensus 376 C~~C~~~S~~~e~F~~LsLpip~~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~ 455 (825)
|..|++.+.+.++|++|+|++|..
T Consensus 127 C~~C~~~s~~~e~f~~l~l~i~~~-------------------------------------------------------- 150 (334)
T cd02659 127 CKECPHESEREEYFLDLQVAVKGK-------------------------------------------------------- 150 (334)
T ss_pred ecCCCceecccccceEEEEEcCCC--------------------------------------------------------
Confidence 999999999999999999987520
Q ss_pred cceeeEeecCcccccccccCCCcEEEEEeccCCCCceeEEEeeecccccccccccCCcceeccccEEEEecCCCCCHHHH
Q 003370 456 NHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADI 535 (825)
Q Consensus 456 ~~~~~k~~~d~~~~~~~i~~~d~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~~l 535 (825)
T Consensus 151 -------------------------------------------------------------------------------- 150 (334)
T cd02659 151 -------------------------------------------------------------------------------- 150 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeEEEEecCCCCccCCCccCCCC
Q 003370 536 DIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSIL 615 (825)
Q Consensus 536 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (825)
T Consensus 151 -------------------------------------------------------------------------------- 150 (334)
T cd02659 151 -------------------------------------------------------------------------------- 150 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCceEEEEEecCccccccCccccccCccccccccccccccCCCCCHHHHHHhhcCCcccCCCCCCCCccccccceEEE
Q 003370 616 KPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATK 695 (825)
Q Consensus 616 ~~~~~~~i~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~w~C~~Ck~~~~A~K 695 (825)
.+|++||+.|+.+|.+.+++.|.|++|++.+.|.|
T Consensus 151 ---------------------------------------------~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~k 185 (334)
T cd02659 151 ---------------------------------------------KNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEK 185 (334)
T ss_pred ---------------------------------------------CCHHHHHHHhcCeeEecCCccEecCcCCCcccEEE
Confidence 26899999999999999999999999999999999
Q ss_pred EEEeeeCCCeEEEEEeeeEeec--ccccccceeeeccCcccccccccccCC-----------CCceEEEEEEEEEeecCC
Q 003370 696 KLDLWMLPDVLVFHLKRFSYSR--YLKNKLDTFVNFPILNLDLSKYMKSKD-----------GESYVYDLFAISNHYGGL 762 (825)
Q Consensus 696 k~~i~~lP~iLiIhLKRF~~~~--~~~~Ki~~~V~FPl~~LDls~~~~~~~-----------~~~~~YdL~AVv~H~G~l 762 (825)
+..|.++|+||+|||+||.++. ..+.|+++.|.||. .|||++|+.... .....|+|+|||+|.|+.
T Consensus 186 ~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp~-~Ldl~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~vI~H~G~~ 264 (334)
T cd02659 186 GVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPL-ELDMEPYTEKGLAKKEGDSEKKDSESYIYELHGVLVHSGDA 264 (334)
T ss_pred EEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCCc-eecCccccccccccccccccccCCCCeeEEEEEEEEecCCC
Confidence 9999999999999999999973 46789999999995 899999987532 245789999999999999
Q ss_pred CCCeEEEEEeeCCCCcEEEeCCCceeecCcCccc----------------------CCCeEEEEEEEec
Q 003370 763 GGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIK----------------------TSAAYVLFYRRVK 809 (825)
Q Consensus 763 ~gGHYtAy~k~~~~~~Wy~fnDs~V~~v~~~~v~----------------------s~~AYvLFY~R~~ 809 (825)
.+|||+||+|+..+++||.|||+.|+++++++|. +.+||||||+|++
T Consensus 265 ~~GHY~~~vk~~~~~~W~~~nD~~V~~i~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ay~l~Y~~~~ 333 (334)
T cd02659 265 HGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEECFGGEETQKTYDSGPRAFKRTTNAYMLFYERKS 333 (334)
T ss_pred CCCCeEEEEECCCCCceEEEeCcccEECCHHHHHHHcCCCccccccccccccccccccceEEEEEEEeC
Confidence 9999999999866899999999999999988883 4579999999976
No 17
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.4e-52 Score=438.52 Aligned_cols=123 Identities=33% Similarity=0.656 Sum_probs=112.8
Q ss_pred CCHHHHHHhhcCCcccCCCCCCCCccccccceEEEEEEeeeCCCeEEEEEeeeEeec-ccccccceeeeccCcccccccc
Q 003370 661 ISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSR-YLKNKLDTFVNFPILNLDLSKY 739 (825)
Q Consensus 661 ~sL~dCL~~f~~~E~L~~~d~w~C~~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~~-~~~~Ki~~~V~FPl~~LDls~~ 739 (825)
.+|++||+.|+.+|.+++ |.|++| +..|.++|+||+||||||.++. +...|+++.|.||. .|
T Consensus 96 ~sl~~~L~~~~~~E~l~~---~~C~~C--------~~~i~~lP~vLii~LkRF~~~~~~~~~K~~~~v~fp~-~l----- 158 (240)
T cd02662 96 TTLEHCLDDFLSTEIIDD---YKCDRC--------QTVIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPE-RL----- 158 (240)
T ss_pred CCHHHHHHHhcCcccccC---cCCCCC--------eEEeecCCcEEEEEEEEEEEcCCCceeeeccEEECCC-cc-----
Confidence 589999999999999965 899999 6789999999999999999997 77889999999995 56
Q ss_pred cccCCCCceEEEEEEEEEeecCCCCCeEEEEEeeC--------------------CCCcEEEeCCCceeecCcCcc-cCC
Q 003370 740 MKSKDGESYVYDLFAISNHYGGLGGGHYTAYAKLI--------------------DENRWYHFDDSHVSPVSEGDI-KTS 798 (825)
Q Consensus 740 ~~~~~~~~~~YdL~AVv~H~G~l~gGHYtAy~k~~--------------------~~~~Wy~fnDs~V~~v~~~~v-~s~ 798 (825)
....|+|+|||+|.|+.++|||+||+|.. ..++||+|||+.|+++++++| .++
T Consensus 159 ------~~~~Y~L~avi~H~G~~~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~ 232 (240)
T cd02662 159 ------PKVLYRLRAVVVHYGSHSSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISDTTVKEVSESEVLEQK 232 (240)
T ss_pred ------CCceEEEEEEEEEeccCCCceEEEEEeCCCcccccccccccccccccCccCCCEEEEechheEEeCHHHHhhCC
Confidence 34789999999999988999999999975 348999999999999999999 999
Q ss_pred CeEEEEEE
Q 003370 799 AAYVLFYR 806 (825)
Q Consensus 799 ~AYvLFY~ 806 (825)
+||||||+
T Consensus 233 ~aY~LfYe 240 (240)
T cd02662 233 SAYMLFYE 240 (240)
T ss_pred CEEEEEeC
Confidence 99999996
No 18
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-51 Score=453.26 Aligned_cols=150 Identities=39% Similarity=0.628 Sum_probs=134.0
Q ss_pred CCCCCHHHHHHhhcCCcccCCCCCCCCccccc---------------------------cceEEEEEEeeeCCCeEEEEE
Q 003370 658 QEAISLFSCLDAFLTEEPLGPDDMWYCPQCKE---------------------------HRQATKKLDLWMLPDVLVFHL 710 (825)
Q Consensus 658 ~~~~sL~dCL~~f~~~E~L~~~d~w~C~~Ck~---------------------------~~~A~Kk~~i~~lP~iLiIhL 710 (825)
..++|+++||..||+-|.|.++|+|.|+.|-+ ...|.|++.|-.+|+||+|||
T Consensus 675 D~p~Svq~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihl 754 (877)
T KOG1873|consen 675 DEPCSVQRCLKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHL 754 (877)
T ss_pred CCCccHHHHHHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehH
Confidence 56899999999999999999999999999976 124789999999999999999
Q ss_pred eeeEee-cccccccceeeeccCcccccccccccCCC-----CceEEEEEEEEEeecCCCCCeEEEEEee-----------
Q 003370 711 KRFSYS-RYLKNKLDTFVNFPILNLDLSKYMKSKDG-----ESYVYDLFAISNHYGGLGGGHYTAYAKL----------- 773 (825)
Q Consensus 711 KRF~~~-~~~~~Ki~~~V~FPl~~LDls~~~~~~~~-----~~~~YdL~AVv~H~G~l~gGHYtAy~k~----------- 773 (825)
|||... +....|++.+|+|+ +-+||.+|+..... .+..|+|+||+.|.|.|.+||||||+|.
T Consensus 755 Krf~q~~~~~~~k~~~h~~f~-E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsgtm~~ghyvayv~~~t~~~~~~~~~ 833 (877)
T KOG1873|consen 755 KRFFQDIRGRLSKLNKHVDFK-EFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSGTMSYGHYVAYVRGGTFLDLSAPSN 833 (877)
T ss_pred hhhhhhhhchhhcccccchHH-HHHHHHHHhhhhccccCCcchhhhhhccceeccccccCCcchhhhhccchhhccCccc
Confidence 999987 44578999999999 79999999874321 3458999999999999999999999984
Q ss_pred ---------CCCCcEEEeCCCceeecCcCcccCCCeEEEEEEEe
Q 003370 774 ---------IDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRV 808 (825)
Q Consensus 774 ---------~~~~~Wy~fnDs~V~~v~~~~v~s~~AYvLFY~R~ 808 (825)
...++||+..|++|.++++++|....||||||+|+
T Consensus 834 ~~~~~sd~~~~~~~Wy~iSDs~VrevS~d~vLkseAYlLFYERI 877 (877)
T KOG1873|consen 834 SKDFESDAGIPSGRWYYISDSIVREVSLDEVLKSEAYLLFYERI 877 (877)
T ss_pred cccchhccCCCCcceEEecchheecccHHHHhhhhhhhhheecC
Confidence 14689999999999999999999999999999995
No 19
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.6e-49 Score=413.90 Aligned_cols=146 Identities=51% Similarity=0.939 Sum_probs=135.4
Q ss_pred CCHHHHHHhhcCCcccCCCCCCCCccccccceEEEEEEeeeCCCeEEEEEeeeEeecccccccceeeeccCccccccccc
Q 003370 661 ISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYM 740 (825)
Q Consensus 661 ~sL~dCL~~f~~~E~L~~~d~w~C~~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~ 740 (825)
.+|++||+.|+.+|.+++++.|.|++|++++.+.++..|.++|+||+|||+||.++.....|+++.|.||.+.|||++|+
T Consensus 84 ~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~~~~~K~~~~v~~~~~~l~l~~~~ 163 (230)
T cd02674 84 VTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPYV 163 (230)
T ss_pred CCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecCCCCcccCCceEecccccccccccc
Confidence 58999999999999999999999999999999999999999999999999999999888899999999998789999986
Q ss_pred ccC-CCCceEEEEEEEEEeecCCCCCeEEEEEeeCCCCcEEEeCCCceeecCcCcccCCCeEEEEEE
Q 003370 741 KSK-DGESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYR 806 (825)
Q Consensus 741 ~~~-~~~~~~YdL~AVv~H~G~l~gGHYtAy~k~~~~~~Wy~fnDs~V~~v~~~~v~s~~AYvLFY~ 806 (825)
... .....+|+|+|||+|.|..++|||+||+|...+++||.|||+.|++++++++....||||||+
T Consensus 164 ~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~~~~~W~~fnD~~V~~i~~~~~~~~~~YlL~Y~ 230 (230)
T cd02674 164 DTRSFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230 (230)
T ss_pred CcccCCCCceEEEEEEEEeeCCCCCcEEEEEEECCCCCceEEEcCCeEEEcCHHHccCCCceEEEeC
Confidence 322 235678999999999997799999999997556999999999999999999999999999996
No 20
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.5e-46 Score=394.45 Aligned_cols=130 Identities=27% Similarity=0.465 Sum_probs=108.7
Q ss_pred CHHHHHHhhcCCcccCCCCCCCCccccccceEEEEEEeeeCCCeEEEEEeeeEeecccccccceeeeccCcccccccccc
Q 003370 662 SLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMK 741 (825)
Q Consensus 662 sL~dCL~~f~~~E~L~~~d~w~C~~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~~ 741 (825)
+|++|++.|.++|.++ |.|++|++. .|+|+..|+++|+||+||||||.+.. ++...+.. ..++|.+|..
T Consensus 111 ~le~l~~~~~~~~~~e----~~C~~C~~~-~a~k~~~i~~~P~vL~i~lkRf~~~~----~~~~~~~~--~~~~~~~~~~ 179 (245)
T cd02673 111 IDELLISNFKTWSPIE----KDCSSCKCE-SAISSERIMTFPECLSINLKRYKLRI----ATSDYLKK--NEEIMKKYCG 179 (245)
T ss_pred hHHHHHHHhhcccccC----ccCCCCCCc-cceeechhhhCChhhEEeeEeeeecc----cccccccc--cccccccccC
Confidence 4778888888877764 799999975 89999999999999999999997643 23333333 3577888775
Q ss_pred cCCCCceEEEEEEEEEeec-CCCCCeEEEEEeeCC-CCcEEEeCCCceeecCcCccc---CCCeEEEEEE
Q 003370 742 SKDGESYVYDLFAISNHYG-GLGGGHYTAYAKLID-ENRWYHFDDSHVSPVSEGDIK---TSAAYVLFYR 806 (825)
Q Consensus 742 ~~~~~~~~YdL~AVv~H~G-~l~gGHYtAy~k~~~-~~~Wy~fnDs~V~~v~~~~v~---s~~AYvLFY~ 806 (825)
....|+|+|||+|.| ++++||||||+|+.. +++||.|||+.|+++++++|. +.+||||||+
T Consensus 180 ----~~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~Wy~fnD~~V~~v~~~~v~~~~~~~aYiLFY~ 245 (245)
T cd02673 180 ----TDAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSDDEIRPVSKNDVSTNARSSGYLIFYD 245 (245)
T ss_pred ----CCceEEEEEEEEECCCCCCCceEEEEEEcCCCCCeEEEeeCceeeEcCHHHHhhccCCceEEEEEC
Confidence 346799999999999 589999999999765 789999999999999999997 6799999996
No 21
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-46 Score=425.45 Aligned_cols=324 Identities=35% Similarity=0.653 Sum_probs=272.9
Q ss_pred CCCCcccceecCCCchhHHHHHHHHhCChHHHHHHHhcCccccccCCCCCc-hhHHHHHHHHHHHHHhcCC-CCccChHH
Q 003370 212 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGM-HGELALAFGDLLRKLWSSG-RAAVAPRA 289 (825)
Q Consensus 212 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~-~~~l~~~l~~L~~~l~~~~-~~~i~p~~ 289 (825)
...-|+.||.|+|||||||++||+|.|.+..+...+...+. ..+... .-++.+++..++..||++. ..++.|..
T Consensus 156 ~~~~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~----~~~~~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~~ 231 (492)
T KOG1867|consen 156 TTALGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHS----KEPSSSGSSCLVCDLDRLFQALYSGHNRTPYSPFE 231 (492)
T ss_pred eeeecccccccccHHHHHHHHHHHhhccchhhccchhhhcc----cCCCCCCCcchhhhhhhhhhHhhcCCCCCCcChHH
Confidence 35678999999999999999999999999999998877443 112222 4578999999999999998 89999999
Q ss_pred HHHHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCChHHHHHHHHhhccccCCCcccccceEE
Q 003370 290 FKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQ 369 (825)
Q Consensus 290 ~~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~d~~~~~~~~~a~~~w~~~~~~~~SiI~~lF~G~ 369 (825)
+...+++..|.+.|+.|||||||+..++|.+|.+.+...+.. .... | ...-.+++...|.|+
T Consensus 232 ~l~~~~k~~~~~~g~~Qqda~eF~~~~~~~~~~~~~~~~k~~---~~~~------------~---~~~c~~iv~~~F~G~ 293 (492)
T KOG1867|consen 232 LLNLVWKHSPNLAGYEQQDAHEFLIALLDRLHREKDDCGKSL---IASQ------------S---NKQCPCIVHTIFSGT 293 (492)
T ss_pred HHHHHHHhCcccccccccchHHHHHHhccccccccccccccc---cccc------------C---Ccccccccceeecce
Confidence 999999999999999999999999999999998771111110 0000 0 002367899999999
Q ss_pred EEEEEEcCCCCCeeeeecCCeeEEEeCCCCceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccce
Q 003370 370 YKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGL 449 (825)
Q Consensus 370 ~~s~i~C~~C~~~S~~~e~F~~LsLpip~~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l 449 (825)
+.+.++|..|+..|.+++||++|+|.||....-
T Consensus 294 L~~~v~c~~c~~~S~~~dpf~disL~i~~~~~~----------------------------------------------- 326 (492)
T KOG1867|consen 294 LQSDVTCQTCGSKSTTYDPFMDISLDIPDQFTS----------------------------------------------- 326 (492)
T ss_pred eccceeehhhcceeeeccCccceeeecchhccC-----------------------------------------------
Confidence 999999999999999999999999999843100
Q ss_pred eEEEeecceeeEeecCcccccccccCCCcEEEEEeccCCCCceeEEEeeecccccccccccCCcceeccccEEEEecCCC
Q 003370 450 LLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEH 529 (825)
Q Consensus 450 ~~~e~~~~~~~k~~~d~~~~~~~i~~~d~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~ 529 (825)
+
T Consensus 327 ----------------------------------------------------------------------~--------- 327 (492)
T KOG1867|consen 327 ----------------------------------------------------------------------S--------- 327 (492)
T ss_pred ----------------------------------------------------------------------c---------
Confidence 0
Q ss_pred CCHHHHHHHHHHHccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeEEEEecCCCCccCCC
Q 003370 530 LSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPI 609 (825)
Q Consensus 530 ~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (825)
.
T Consensus 328 ----------------~--------------------------------------------------------------- 328 (492)
T KOG1867|consen 328 ----------------S--------------------------------------------------------------- 328 (492)
T ss_pred ----------------c---------------------------------------------------------------
Confidence 0
Q ss_pred ccCCCCCCCCceEEEEEecCccccccCccccccCccccccccccccccCCCCCHHHHHHhhcCCcccCCCCCCCCccccc
Q 003370 610 QKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKE 689 (825)
Q Consensus 610 ~~~~~~~~~~~~~i~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~w~C~~Ck~ 689 (825)
......+|.+|++.|+..|.++......|..|+.
T Consensus 329 ----------------------------------------------~~~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~ 362 (492)
T KOG1867|consen 329 ----------------------------------------------VRSPELTLLDCLDRFTRSEQLGKDSKYKCSSCKS 362 (492)
T ss_pred ----------------------------------------------cccchhhhhhhhhhhhhhhhcCcccccccCCccc
Confidence 0000247899999999999999999999999999
Q ss_pred cceEEEEEEeeeCCCeEEEEEeeeEeecccc-cccceeeeccCcccccccccccC-----CCCceEEEEEEEEEeecCCC
Q 003370 690 HRQATKKLDLWMLPDVLVFHLKRFSYSRYLK-NKLDTFVNFPILNLDLSKYMKSK-----DGESYVYDLFAISNHYGGLG 763 (825)
Q Consensus 690 ~~~A~Kk~~i~~lP~iLiIhLKRF~~~~~~~-~Ki~~~V~FPl~~LDls~~~~~~-----~~~~~~YdL~AVv~H~G~l~ 763 (825)
.+.++|++.|.++|.+|.+|||||.+..... .|++++|.||. .|+|.+|+..+ +..+..|+|+|||+|+|.++
T Consensus 363 ~~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~ki~~~v~fp~-~l~m~p~~~~~~~~~~~~~~~~Y~L~AVV~H~G~~~ 441 (492)
T KOG1867|consen 363 KQESTKQLTIRKLPAVLCLHLKRFEHSATGAREKIDSYVSFPV-LLNMKPYCSSEKLKSQDNPDHLYELRAVVVHHGTVG 441 (492)
T ss_pred ccccccccccccCCceeeeeeccccccccccccccCcccccch-hhcCCccccccccccCCCCCceEEEEEEEEeccCCC
Confidence 9999999999999999999999999985433 39999999994 89999999851 12468999999999999999
Q ss_pred CCeEEEEEeeCCCCcEEEeCCCceeecCcCcccCCCeEEEEEEEecCC
Q 003370 764 GGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRVKSK 811 (825)
Q Consensus 764 gGHYtAy~k~~~~~~Wy~fnDs~V~~v~~~~v~s~~AYvLFY~R~~~~ 811 (825)
+||||||+| ..+.||+|||+.|+.+++++|.+..||+|||.++...
T Consensus 442 SGHY~aY~r--~~~~~~~~dDs~v~~~s~~eVl~~~aylLFY~~~~~~ 487 (492)
T KOG1867|consen 442 SGHYVAYRR--QSGGWFKCDDSTVTKVSEEEVLSSQAYLLFYTQEQVE 487 (492)
T ss_pred CCceEEEEE--eCCCcEEEcCeEEEEeeHHHhhhchhhheehhHHhhh
Confidence 999999999 5899999999999999999999999999999987654
No 22
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.7e-46 Score=384.24 Aligned_cols=127 Identities=27% Similarity=0.428 Sum_probs=111.9
Q ss_pred CHHHHHHhhcCCcccCCCCCCCCccccccceEEEEEEeeeCCCeEEEEEeeeEeecccccccceeeeccCcccccccccc
Q 003370 662 SLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMK 741 (825)
Q Consensus 662 sL~dCL~~f~~~E~L~~~d~w~C~~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~~ 741 (825)
+|++||+.|+.+|.+++++.++ .+.++|+..|++||+||+||||||.|+...+.|+++.|.||+ .|
T Consensus 94 ~L~e~L~~~~~ee~l~~~~~~~------~~~~~~~~~i~~lP~vL~i~LkRF~~~~~~~~Ki~~~v~FP~-~l------- 159 (228)
T cd02665 94 NLHECLEAAMFEGEVELLPSDH------SVKSGQERWFTELPPVLTFELSRFEFNQGRPEKIHDKLEFPQ-II------- 159 (228)
T ss_pred CHHHHHHHhhhhcccccccccc------hhhhhhhhhhhhCChhhEEEeEeeEEcCCccEECCEEEEeeC-cc-------
Confidence 7999999999999998765433 345778888999999999999999999877899999999996 45
Q ss_pred cCCCCceEEEEEEEEEeecCCCCCeEEEEEeeCCCCcEEEeCCCceeecCcCccc--------CCCeEEEEEE
Q 003370 742 SKDGESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIK--------TSAAYVLFYR 806 (825)
Q Consensus 742 ~~~~~~~~YdL~AVv~H~G~l~gGHYtAy~k~~~~~~Wy~fnDs~V~~v~~~~v~--------s~~AYvLFY~ 806 (825)
....|+|+|||+|.|++++|||+||+|+..+++||+|||+.|+++++++|. ..+||||||.
T Consensus 160 ----~~~~Y~L~aVi~H~G~~~~GHY~~~i~~~~~~~W~~fdD~~V~~~~~~~v~~~~fGg~~~~~AYiLfYv 228 (228)
T cd02665 160 ----QQVPYELHAVLVHEGQANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGRNPSAYCLMYI 228 (228)
T ss_pred ----CCceeEEEEEEEecCCCCCCEEEEEEEcCCCCEEEEEECCeeEEcCHHHHhhhccCCCCCCceEEEEEC
Confidence 235799999999999999999999999877899999999999999988885 3589999994
No 23
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=1.9e-45 Score=390.40 Aligned_cols=258 Identities=40% Similarity=0.756 Sum_probs=215.4
Q ss_pred ccceecCCCchhHHHHHHHHhCChHHHHHHHhc-CccccccCCCCCchhHHHHHHHHHHHHHhcC--CCCccChHHHHHH
Q 003370 217 LAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSS--GRAAVAPRAFKGK 293 (825)
Q Consensus 217 ~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~-~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~--~~~~i~p~~~~~~ 293 (825)
++||.|.||||||||+||||+++|+|++++++. +....+..++......++.+|+.|+..|+.. ....+.|..|+.+
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 589999999999999999999999999999865 2223344455555678999999999999998 6789999999999
Q ss_pred HhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCChHHHHHHHHhhccccCCCcccccceEEEEEE
Q 003370 294 LARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKST 373 (825)
Q Consensus 294 l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~d~~~~~~~~~a~~~w~~~~~~~~SiI~~lF~G~~~s~ 373 (825)
++...+.|..+.||||+|||..||+.|++++..... ...|.+......+++.++|.|++.+.
T Consensus 81 l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~f~~~~~~~ 142 (269)
T PF00443_consen 81 LSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFK------------------RKSWKNTNSSEDSLISDLFGGQFESS 142 (269)
T ss_dssp HHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSS------------------HHHHHHHHCCEESHHHHHH-EEEEEE
T ss_pred ccccccccccccccchhhhhcccccccchhhccccc------------------cccccccccccccccccccccccccc
Confidence 999999999999999999999999999998865332 22345566677888999999999999
Q ss_pred EEcCCCCCeeeeecCCeeEEEeCCCCceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeEEE
Q 003370 374 LVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAE 453 (825)
Q Consensus 374 i~C~~C~~~S~~~e~F~~LsLpip~~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~e 453 (825)
++|..|+..
T Consensus 143 ~~c~~c~~~----------------------------------------------------------------------- 151 (269)
T PF00443_consen 143 IKCSSCKNS----------------------------------------------------------------------- 151 (269)
T ss_dssp EEETTTTCE-----------------------------------------------------------------------
T ss_pred ccccccccc-----------------------------------------------------------------------
Confidence 999888743
Q ss_pred eecceeeEeecCcccccccccCCCcEEEEEeccCCCCceeEEEeeecccccccccccCCcceeccccEEEEecCCCCCHH
Q 003370 454 VYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGA 533 (825)
Q Consensus 454 ~~~~~~~k~~~d~~~~~~~i~~~d~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~ 533 (825)
T Consensus 152 -------------------------------------------------------------------------------- 151 (269)
T PF00443_consen 152 -------------------------------------------------------------------------------- 151 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeEEEEecCCCCccCCCccCC
Q 003370 534 DIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDS 613 (825)
Q Consensus 534 ~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (825)
T Consensus 152 -------------------------------------------------------------------------------- 151 (269)
T PF00443_consen 152 -------------------------------------------------------------------------------- 151 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCceEEEEEecCccccccCccccccCccccccccccccccCCCCCHHHHHHhhcCCcccCCCCCCCCccccccceE
Q 003370 614 ILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQA 693 (825)
Q Consensus 614 ~~~~~~~~~i~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~w~C~~Ck~~~~A 693 (825)
T Consensus 152 -------------------------------------------------------------------------------- 151 (269)
T PF00443_consen 152 -------------------------------------------------------------------------------- 151 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEeeeCCCeEEEEEeeeEeecc--cccccceeeeccCcccccccccccCCC---CceEEEEEEEEEeecCCCCCeEE
Q 003370 694 TKKLDLWMLPDVLVFHLKRFSYSRY--LKNKLDTFVNFPILNLDLSKYMKSKDG---ESYVYDLFAISNHYGGLGGGHYT 768 (825)
Q Consensus 694 ~Kk~~i~~lP~iLiIhLKRF~~~~~--~~~Ki~~~V~FPl~~LDls~~~~~~~~---~~~~YdL~AVv~H~G~l~gGHYt 768 (825)
+..|+++|+||+|||+||.|+.. ...|+...|.||++.|||++|+..+.. ....|+|+|||+|+|..++|||+
T Consensus 152 --~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~ 229 (269)
T PF00443_consen 152 --QSSISSLPPILIIQLKRFEFDQETGRSKKINNPVEFPLEELDLSPYLEKNNSECQSNVKYRLVAVIVHYGSADSGHYV 229 (269)
T ss_dssp --EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB--SSEEEGGGGBSSCCCTHTSSSEEEEEEEEEEESSTTSEEEE
T ss_pred --ccccccccceeeeccccceeccccccccccccccccCchhhhhhhhhccccccccccceeeehhhhccccccccceEE
Confidence 33577899999999999987754 578999999999779999999987653 35799999999999999999999
Q ss_pred EEEeeCCCCcEEEeCCCceeecCcCcccC---CCeEEEEE
Q 003370 769 AYAKLIDENRWYHFDDSHVSPVSEGDIKT---SAAYVLFY 805 (825)
Q Consensus 769 Ay~k~~~~~~Wy~fnDs~V~~v~~~~v~s---~~AYvLFY 805 (825)
||+|+..+++||.|||+.|++++.++|.. ..||||||
T Consensus 230 a~v~~~~~~~W~~~dD~~v~~~~~~~v~~~~~~~~yll~Y 269 (269)
T PF00443_consen 230 AYVRDSDDGKWYKFDDSRVTEVSWEEVIKSSNSTAYLLFY 269 (269)
T ss_dssp EEEEETTTTEEEEEETTEEEEESHHHHCCGGSTCEEEEEE
T ss_pred EeeccccCCeEEEeeCCceEECCHHHHhhccCCceEEEeC
Confidence 99998777789999999999999999987 99999999
No 24
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.3e-45 Score=398.27 Aligned_cols=290 Identities=26% Similarity=0.354 Sum_probs=224.4
Q ss_pred ccceecCCCchhHHHHHHHHhCChHHHHHHHhcC--cccccc----CCCC----------CchhHHHHHHHHHHHHHhcC
Q 003370 217 LAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDY--SDEINT----ENPL----------GMHGELALAFGDLLRKLWSS 280 (825)
Q Consensus 217 ~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~--~~~~~~----~n~~----------~~~~~l~~~l~~L~~~l~~~ 280 (825)
|+||.|+||||||||+||||+++|+||+++++.- ..+... .... .....++.+|+.||..|+.+
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 6899999999999999999999999999998741 110000 0000 01236899999999999998
Q ss_pred CCCccChHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCChHHHHHHHHhhccccCCC
Q 003370 281 GRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDS 360 (825)
Q Consensus 281 ~~~~i~p~~~~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~d~~~~~~~~~a~~~w~~~~~~~~S 360 (825)
...++.|..++..+.. .|||||||+..||+.||++++.....+.. ++ ........+
T Consensus 81 ~~~~v~P~~~l~~l~~--------~QQDa~Ef~~~lld~Le~~lk~~~~~~~~--------~~--------~~~~~~~~~ 136 (343)
T cd02666 81 NTRSVTPSKELAYLAL--------RQQDVTECIDNVLFQLEVALEPISNAFAG--------PD--------TEDDKEQSD 136 (343)
T ss_pred CCCccCcHHHHHhccc--------cccchHHHHHHHHHHHHHHhcCccccccC--------cc--------cccccchhh
Confidence 8899999999876642 89999999999999999999754422110 00 001123457
Q ss_pred cccccceEEEEEEEEcCCCC---CeeeeecCCeeEEEeCCCCceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHH
Q 003370 361 LIVDVFQGQYKSTLVCPVCS---KVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILAL 437 (825)
Q Consensus 361 iI~~lF~G~~~s~i~C~~C~---~~S~~~e~F~~LsLpip~~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l 437 (825)
+|.++|.|++++.++|..|+ ..+.+.|+|++|+|+|+.+..-
T Consensus 137 ~I~~lF~G~~~~~i~c~~~~~~~~~s~~~E~F~~L~l~I~~~~~~----------------------------------- 181 (343)
T cd02666 137 LIKRLFSGKTKQQLVPESMGNQPSVRTKTERFLSLLVDVGKKGRE----------------------------------- 181 (343)
T ss_pred hhhHhceeeEEEEEEecccCCCCCCccccceeEEEEEecCccccc-----------------------------------
Confidence 89999999999999999997 8899999999999999643200
Q ss_pred HhhccCCcccceeEEEeecceeeEeecCcccccccccCCCcEEEEEeccCCCCceeEEEeeecccccccccccCCcceec
Q 003370 438 STACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLF 517 (825)
Q Consensus 438 ~~~~~~~~~~~l~~~e~~~~~~~k~~~d~~~~~~~i~~~d~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 517 (825)
+
T Consensus 182 -----------------------------------~-------------------------------------------- 182 (343)
T cd02666 182 -----------------------------------I-------------------------------------------- 182 (343)
T ss_pred -----------------------------------c--------------------------------------------
Confidence 0
Q ss_pred cccEEEEecCCCCCHHHHHHHHHHHccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeEEE
Q 003370 518 GAPLVTYLEEEHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLS 597 (825)
Q Consensus 518 g~P~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (825)
T Consensus 183 -------------------------------------------------------------------------------- 182 (343)
T cd02666 183 -------------------------------------------------------------------------------- 182 (343)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCccCCCccCCCCCCCCceEEEEEecCccccccCccccccCccccccccccccccCCCCCHHHHHHhhcCCcccC
Q 003370 598 LTDERISSCKPIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLG 677 (825)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~ 677 (825)
.......+|++||+.|+++|.
T Consensus 183 ---------------------------------------------------------~~~~~~~~L~d~L~~~~~~e~-- 203 (343)
T cd02666 183 ---------------------------------------------------------VVLLEPKDLYDALDRYFDYDS-- 203 (343)
T ss_pred ---------------------------------------------------------cccCCCCCHHHHHHHhcChhh--
Confidence 000123589999999999887
Q ss_pred CCCCCCCccccccceEEEEEEeeeCCCeEEEEEeeeEeecccccccceeeeccCcccccccccccC--------------
Q 003370 678 PDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSK-------------- 743 (825)
Q Consensus 678 ~~d~w~C~~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~~~~-------------- 743 (825)
|.++|+||.|||| +.+.+....+....-.|| ...|..+++...
T Consensus 204 ---------------------~~~~P~vl~~qlq-~~~~~~~~~~~~dry~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~ 260 (343)
T cd02666 204 ---------------------LTKLPQRSQVQAQ-LAQPLQRELISMDRYELP-SSIDDIDELIREAIQSESSLVRQAQN 260 (343)
T ss_pred ---------------------hccCCHHHHHHHh-hcccccchheeecccccc-chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999 555555555666666888 466666665431
Q ss_pred --------------CCCceEEEEEEEEEeecCCCCCeEEEEEeeCCCCcEEEeCCCceeecCcCccc------CCCeEEE
Q 003370 744 --------------DGESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIK------TSAAYVL 803 (825)
Q Consensus 744 --------------~~~~~~YdL~AVv~H~G~l~gGHYtAy~k~~~~~~Wy~fnDs~V~~v~~~~v~------s~~AYvL 803 (825)
+.....|+|+||++|.|..++|||+||+|+..++.||.|||+.|++++.++|. +.+||+|
T Consensus 261 ~~~~l~~~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~~ev~~~~~~~~~~pY~l 340 (343)
T cd02666 261 ELAELKHEIEKQFDDLKSYGYRLHAVFIHRGEASSGHYWVYIKDFEENVWRKYNDETVTVVPASEVFLFTLGNTATPYFL 340 (343)
T ss_pred HHHHHHHHHHHhhcccCCCceEEEEEEEeecCCCCCeEEEEEEECCCCeEEEEECCeeEEecHHHHhhcccCCCCCCEEE
Confidence 01467899999999999999999999999877899999999999999987775 4689999
Q ss_pred EEE
Q 003370 804 FYR 806 (825)
Q Consensus 804 FY~ 806 (825)
||.
T Consensus 341 ~Yv 343 (343)
T cd02666 341 VYV 343 (343)
T ss_pred EeC
Confidence 994
No 25
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-44 Score=396.05 Aligned_cols=300 Identities=29% Similarity=0.539 Sum_probs=253.5
Q ss_pred CCCCcccceecCCCchhHHHHHHHHhCChHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHHHhcCCC---------
Q 003370 212 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGR--------- 282 (825)
Q Consensus 212 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~--------- 282 (825)
...+|.+||+|+||+||||||+|+|+++|.|...++.. ..+-...+.....++.+++.+|+..|.++..
T Consensus 302 ~~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~--~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~ 379 (763)
T KOG0944|consen 302 LFGPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQ--ERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSN 379 (763)
T ss_pred ccCCCccceeecCcchhHHHHHHHheecccHHHhhccc--cceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCccc
Confidence 56799999999999999999999999999998887755 1222222334456899999999999987642
Q ss_pred -CccChHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCChHHHHHHHHhhccccCCCc
Q 003370 283 -AAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSL 361 (825)
Q Consensus 283 -~~i~p~~~~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~d~~~~~~~~~a~~~w~~~~~~~~Si 361 (825)
..|+|..|+..+++-+|.|+..+||||||||.+||+.|.+-..... .-
T Consensus 380 qngIsP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~rs~~-------------------------------~n 428 (763)
T KOG0944|consen 380 QNGISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSRSSL-------------------------------PN 428 (763)
T ss_pred cCCcCHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhcccccC-------------------------------CC
Confidence 3689999999999999999999999999999999999986431110 23
Q ss_pred ccccceEEEEEEEEcCCCCCeeeeecCCeeEEEeCCCCceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhc
Q 003370 362 IVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTAC 441 (825)
Q Consensus 362 I~~lF~G~~~s~i~C~~C~~~S~~~e~F~~LsLpip~~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~ 441 (825)
+.++|......++.|..|.+++.++++-+.+.||||....
T Consensus 429 ptd~frF~ve~Rv~C~~c~kVrYs~~~~~~i~lpv~~~~~---------------------------------------- 468 (763)
T KOG0944|consen 429 PTDLFRFEVEDRVSCLGCRKVRYSYESEYLIQLPVPMTNE---------------------------------------- 468 (763)
T ss_pred HHHHHHhhhhhhhhhhccccccccchhheeeEeecccccc----------------------------------------
Confidence 7899999999999999999999999999999999874210
Q ss_pred cCCcccceeEEEeecceeeEeecCcccccccccCCCcEEEEEeccCCCCceeEEEeeecccccccccccCCcceeccccE
Q 003370 442 CLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPL 521 (825)
Q Consensus 442 ~~~~~~~l~~~e~~~~~~~k~~~d~~~~~~~i~~~d~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~ 521 (825)
T Consensus 469 -------------------------------------------------------------------------------- 468 (763)
T KOG0944|consen 469 -------------------------------------------------------------------------------- 468 (763)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCCCHHHHHHHHHHHccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeEEEEecC
Q 003370 522 VTYLEEEHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDE 601 (825)
Q Consensus 522 ~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (825)
T Consensus 469 -------------------------------------------------------------------------------- 468 (763)
T KOG0944|consen 469 -------------------------------------------------------------------------------- 468 (763)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccCCCccCCCCCCCCceEEEEEecCccccccCccccccCccccccccccccccCCCCCHHHHHHhhcCCcccCCCCC
Q 003370 602 RISSCKPIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDM 681 (825)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~i~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~ 681 (825)
..+.+++..||++|+.+ ++.+
T Consensus 469 -------------------------------------------------------v~~~v~~~~cleaff~p-q~~d--- 489 (763)
T KOG0944|consen 469 -------------------------------------------------------VREKVPISACLEAFFEP-QVDD--- 489 (763)
T ss_pred -------------------------------------------------------ccccCCHHHHHHHhcCC-cchh---
Confidence 01236899999999999 5433
Q ss_pred CCCccccccceEEEEEEeeeCCCeEEEEEeeeEeecccccccceeeeccCcccccccccccCCC----------------
Q 003370 682 WYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDG---------------- 745 (825)
Q Consensus 682 w~C~~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~~~~~~---------------- 745 (825)
++|+.|+.+..|+|+..+.++|++||||.+||.+..|...|++..++.| +.||++.|......
T Consensus 490 f~s~ac~~K~~a~kt~~~ksfP~yLiiqv~rf~~~dw~pkKld~~iemp-e~ldls~~rs~g~~p~ee~lpde~~~~~~~ 568 (763)
T KOG0944|consen 490 FWSTACGEKKGATKTTRFKSFPDYLIIQVGRFTLQDWVPKKLDVSIEMP-EELDLSSYRSKGLQPGEEALPDEAPETSEF 568 (763)
T ss_pred hhhHhhcCccccccccccccCCceEEEEeeEEEecCceeeeeccceecc-hhhchhhhhhcCCCCcccccCCcCcccCcc
Confidence 8999999999999999999999999999999999999999999999999 89999999764300
Q ss_pred --------------------------------------------------------------------------------
Q 003370 746 -------------------------------------------------------------------------------- 745 (825)
Q Consensus 746 -------------------------------------------------------------------------------- 745 (825)
T Consensus 569 ~~d~s~i~qL~~MGFp~eac~rAly~tgN~~aEaA~NWl~~HMdDpd~~~p~vvp~~~~~a~~~~~~e~~v~si~smGf~ 648 (763)
T KOG0944|consen 569 AADRSVISQLVEMGFPEEACRRALYYTGNSGAEAASNWLMEHMDDPDIDDPFVVPGNSPKADAREVDEESVASIVSMGFS 648 (763)
T ss_pred chhHHHHHHHHHcCCCHHHHHHHHhhhcCccHHHHHHHHHHhccCcccCCceecCCCCCccccCCCChhHheeeeeecCc
Confidence
Q ss_pred ------------------------------------------------------CceEEEEEEEEEeec-CCCCCeEEEE
Q 003370 746 ------------------------------------------------------ESYVYDLFAISNHYG-GLGGGHYTAY 770 (825)
Q Consensus 746 ------------------------------------------------------~~~~YdL~AVv~H~G-~l~gGHYtAy 770 (825)
.+.+|.|+|+|.|.| +..+|||+|+
T Consensus 649 ~~qa~~aL~~~n~nveravDWif~h~d~~~ed~~~~~s~~~~~~~~~~~~~~~dg~~~Y~L~a~IsHmGts~~sGHYV~h 728 (763)
T KOG0944|consen 649 RNQAIKALKATNNNVERAVDWIFSHMDIPVEDAAEGESSSAIESESTPSGTGKDGPGKYALFAFISHMGTSAHSGHYVCH 728 (763)
T ss_pred HHHHHHHHHhcCccHHHHHHHHHhcccccccccCcCCCCCcchhhcCCcccCCCCCcceeEEEEEecCCCCCCCcceEEE
Confidence 357899999999999 8999999999
Q ss_pred EeeCCCCcEEEeCCCceeecCcCcccCCCeEEEEEEEe
Q 003370 771 AKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRV 808 (825)
Q Consensus 771 ~k~~~~~~Wy~fnDs~V~~v~~~~v~s~~AYvLFY~R~ 808 (825)
+|. .|+|..|||+.|- .+.+.. ...+||.||+|.
T Consensus 729 irK--egkWVlfNDeKv~-~S~~pp-K~lgYvY~y~R~ 762 (763)
T KOG0944|consen 729 IRK--EGKWVLFNDEKVA-ASQEPP-KDLGYVYLYTRI 762 (763)
T ss_pred Eee--cCcEEEEcchhhh-hccCCh-hhcceEEEEEec
Confidence 995 5999999999997 444333 578999999996
No 26
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-46 Score=410.42 Aligned_cols=308 Identities=28% Similarity=0.503 Sum_probs=266.9
Q ss_pred CCCCcccceecCCCchhHHHHHHHHhCChHHHHHHHhcCccccccCCC-CCchhHHHHHHHHHHHHHhcCCCCccChHHH
Q 003370 212 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENP-LGMHGELALAFGDLLRKLWSSGRAAVAPRAF 290 (825)
Q Consensus 212 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~-~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~ 290 (825)
..+.|.|||+|-|+|||||+++|-|.++|.+++-++..+.. .++| ..-...+.+.++.+|..|..+.-.++.|+.|
T Consensus 90 Rpp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~---td~pd~s~~e~vl~~lQ~iF~hL~~s~lQyyVPeg~ 166 (944)
T KOG1866|consen 90 RPPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGT---TDLPDMSGDEKVLRHLQVIFGHLAASQLQYYVPEGF 166 (944)
T ss_pred CCCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhccc---ccchhhcchHHHHHHHHHHHHHHHHHhhhhhcchhH
Confidence 45678999999999999999999999999999988755333 1212 1222348999999999999888899999999
Q ss_pred HHHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCChHHHHHHHHhhccccCCCcccccceEEE
Q 003370 291 KGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQY 370 (825)
Q Consensus 291 ~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~d~~~~~~~~~a~~~w~~~~~~~~SiI~~lF~G~~ 370 (825)
.+.++-........+||||-||+..|||.+.|.|+.....+ ++...|+|.+
T Consensus 167 Wk~Fr~~~~pln~reqhDA~eFf~sLld~~De~LKklg~p~-----------------------------lf~n~f~G~y 217 (944)
T KOG1866|consen 167 WKQFRLWGEPLNLREQHDALEFFNSLLDSLDEALKKLGHPQ-----------------------------LFSNTFGGSY 217 (944)
T ss_pred HHHhhccCCccchHhhhhHHHHHHHHHHHHHHHHHHhCCcH-----------------------------HHHHHhcCcc
Confidence 99998877778889999999999999999999998765432 5778899999
Q ss_pred EEEEEcCCCCCeeeeecCCeeEEEeCCCCceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCccccee
Q 003370 371 KSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLL 450 (825)
Q Consensus 371 ~s~i~C~~C~~~S~~~e~F~~LsLpip~~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~ 450 (825)
...-.|..|-|.-...|+|+.|+|.|.
T Consensus 218 sdqKIC~~CpHRY~~eE~F~~l~l~i~----------------------------------------------------- 244 (944)
T KOG1866|consen 218 SDQKICQGCPHRYECEESFTTLNLDIR----------------------------------------------------- 244 (944)
T ss_pred chhhhhccCCcccCccccceeeeeecc-----------------------------------------------------
Confidence 999999999999999999999999862
Q ss_pred EEEeecceeeEeecCcccccccccCCCcEEEEEeccCCCCceeEEEeeecccccccccccCCcceeccccEEEEecCCCC
Q 003370 451 LAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHL 530 (825)
Q Consensus 451 ~~e~~~~~~~k~~~d~~~~~~~i~~~d~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~ 530 (825)
T Consensus 245 -------------------------------------------------------------------------------- 244 (944)
T KOG1866|consen 245 -------------------------------------------------------------------------------- 244 (944)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHHHHHccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeEEEEecCCCCccCCCc
Q 003370 531 SGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQ 610 (825)
Q Consensus 531 ~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (825)
T Consensus 245 -------------------------------------------------------------------------------- 244 (944)
T KOG1866|consen 245 -------------------------------------------------------------------------------- 244 (944)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCceEEEEEecCccccccCccccccCccccccccccccccCCCCCHHHHHHhhcCCcccCCCCCCCCcccccc
Q 003370 611 KDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEH 690 (825)
Q Consensus 611 ~~~~~~~~~~~~i~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~w~C~~Ck~~ 690 (825)
.-+|++.|+.|.+.|.|+|.|+|+|++|+++
T Consensus 245 -------------------------------------------------~~nLeesLeqfv~gevlEG~nAYhCeKCdeK 275 (944)
T KOG1866|consen 245 -------------------------------------------------HQNLEESLEQFVKGEVLEGANAYHCEKCDEK 275 (944)
T ss_pred -------------------------------------------------cchHHHHHHHHHHHHHhcCcchhhhhhhhhh
Confidence 0179999999999999999999999999999
Q ss_pred ceEEEEEEeeeCCCeEEEEEeeeEee--cccccccceeeeccCcccccccccccCC-----------------CCceEEE
Q 003370 691 RQATKKLDLWMLPDVLVFHLKRFSYS--RYLKNKLDTFVNFPILNLDLSKYMKSKD-----------------GESYVYD 751 (825)
Q Consensus 691 ~~A~Kk~~i~~lP~iLiIhLKRF~~~--~~~~~Ki~~~V~FPl~~LDls~~~~~~~-----------------~~~~~Yd 751 (825)
+...|++.|.+||++|+||||||.|+ +....|-+..+.|| ..|||.||....- .++.+|+
T Consensus 276 ~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP-~~ldMePYtvsg~a~~e~~~~~~g~~~e~s~~t~~Ye 354 (944)
T KOG1866|consen 276 VDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFP-RELDMEPYTVSGVAKLEGENVESGQQLEQSAGTTKYE 354 (944)
T ss_pred hHhHHHHHHhhCChhheehhhhccchhhhccccccchhcccc-hhhcCCceeehhhhhhccccCCcCcccccccCcceeE
Confidence 99999999999999999999999997 67788999999999 6999999987431 1467999
Q ss_pred EEEEEEeecCCCCCeEEEEEeeC---CCCcEEEeCCCceeecCcCcccC--------------------CCeEEEEEEEe
Q 003370 752 LFAISNHYGGLGGGHYTAYAKLI---DENRWYHFDDSHVSPVSEGDIKT--------------------SAAYVLFYRRV 808 (825)
Q Consensus 752 L~AVv~H~G~l~gGHYtAy~k~~---~~~~Wy~fnDs~V~~v~~~~v~s--------------------~~AYvLFY~R~ 808 (825)
|.||++|.|.+.+|||++|+|.. ..++||+|||..|++.+-.++.. -+||||||+|.
T Consensus 355 LvGVlvHSGqAsaGHYySfIk~rr~~~~~kWykfnD~~Vte~~~n~me~~cfGGey~q~~~~~~~rrR~WNAYmlFYer~ 434 (944)
T KOG1866|consen 355 LVGVLVHSGQASAGHYYSFIKQRRGEDGNKWYKFNDGDVTECKMNEMENECFGGEYMQMMKRMSYRRRWWNAYMLFYERM 434 (944)
T ss_pred EEEEEEecccccCcchhhhhhhhccCCCCceEeccCccccccchhhHHHHhhcchhhhcccccchHHHhhhhHHHHHHHh
Confidence 99999999999999999999964 35899999999999999665521 37999999999
Q ss_pred cCCchh
Q 003370 809 KSKTKA 814 (825)
Q Consensus 809 ~~~~~~ 814 (825)
+..+..
T Consensus 435 ~d~p~~ 440 (944)
T KOG1866|consen 435 DDIPTD 440 (944)
T ss_pred cCCCcc
Confidence 876543
No 27
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=8.4e-41 Score=350.01 Aligned_cols=142 Identities=46% Similarity=0.819 Sum_probs=126.9
Q ss_pred CCHHHHHHhhcCCcccCCCCCCCCcccc--ccceEEEEEEeeeCCCeEEEEEeeeEeec-ccccccceeeeccCcccccc
Q 003370 661 ISLFSCLDAFLTEEPLGPDDMWYCPQCK--EHRQATKKLDLWMLPDVLVFHLKRFSYSR-YLKNKLDTFVNFPILNLDLS 737 (825)
Q Consensus 661 ~sL~dCL~~f~~~E~L~~~d~w~C~~Ck--~~~~A~Kk~~i~~lP~iLiIhLKRF~~~~-~~~~Ki~~~V~FPl~~LDls 737 (825)
.+|++||+.++..|.+.+ ..|..|+ +.+.+.++..|.++|++|+|||+||.++. +...|++..|.|| +.|++.
T Consensus 99 ~~l~~~l~~~~~~e~~~~---~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~k~~~~v~~~-~~l~~~ 174 (255)
T cd02257 99 VSLEDCLEKFFKEEILEG---DNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTKVSFP-LELDLS 174 (255)
T ss_pred CcHHHHHHHhhhhhccCC---CCcccCCCCcccceeEEEecccCCceeEEEeeceeeccccccccCCCeEeCC-CcccCc
Confidence 489999999999998865 6788998 78999999999999999999999999987 7788999999999 589999
Q ss_pred ccccc------CCCCceEEEEEEEEEeecC-CCCCeEEEEEeeCCCCcEEEeCCCceeecCcCcc-----cCCCeEEEEE
Q 003370 738 KYMKS------KDGESYVYDLFAISNHYGG-LGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDI-----KTSAAYVLFY 805 (825)
Q Consensus 738 ~~~~~------~~~~~~~YdL~AVv~H~G~-l~gGHYtAy~k~~~~~~Wy~fnDs~V~~v~~~~v-----~s~~AYvLFY 805 (825)
.++.. .......|+|+|||+|.|. .++|||+||+|+...++||+|||..|++++.+++ ...+||+|||
T Consensus 175 ~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~~~~~~~~~~~~yll~Y 254 (255)
T cd02257 175 PYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGSLSSSAYILFY 254 (255)
T ss_pred cccccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCCCceEEEeccccEEcCHHHhhhccCCCCceEEEEE
Confidence 88753 2335678999999999995 5999999999986669999999999999999888 5789999999
Q ss_pred E
Q 003370 806 R 806 (825)
Q Consensus 806 ~ 806 (825)
+
T Consensus 255 ~ 255 (255)
T cd02257 255 E 255 (255)
T ss_pred C
Confidence 6
No 28
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-42 Score=383.75 Aligned_cols=300 Identities=28% Similarity=0.473 Sum_probs=253.6
Q ss_pred CCCCcccceecCCCchhHHHHHHHHhCChHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHH
Q 003370 212 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFK 291 (825)
Q Consensus 212 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~ 291 (825)
+...|.+||+|.|.||||||.||+|+.+..||+..... ..++|.+ ...++.+|+.+|..|.. ...+++..+|.
T Consensus 188 KkeTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~i-----pTd~p~g-rdSValaLQr~Fynlq~-~~~PvdTtelt 260 (1089)
T COG5077 188 KKETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGI-----PTDHPRG-RDSVALALQRLFYNLQT-GEEPVDTTELT 260 (1089)
T ss_pred ccceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcC-----CCCCCCc-cchHHHHHHHHHHHHhc-cCCCcchHHhh
Confidence 56899999999999999999999999999999988643 3344433 45699999999999977 56788888888
Q ss_pred HHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCChHHHHHHHHhhccccCCCcccccceEEEE
Q 003370 292 GKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYK 371 (825)
Q Consensus 292 ~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~d~~~~~~~~~a~~~w~~~~~~~~SiI~~lF~G~~~ 371 (825)
...+. ..+....|||.|||-..|.|.|+..++...- ...+.++|-|.++
T Consensus 261 rsfgW--ds~dsf~QHDiqEfnrVl~DnLEksmrgt~V-----------------------------Enaln~ifVgkmk 309 (1089)
T COG5077 261 RSFGW--DSDDSFMQHDIQEFNRVLQDNLEKSMRGTVV-----------------------------ENALNGIFVGKMK 309 (1089)
T ss_pred hhcCc--ccchHHHHHhHHHHHHHHHHHHHHhhcCChh-----------------------------hhHHhHHHHHHhh
Confidence 76653 3567789999999999999999975432210 0127889999999
Q ss_pred EEEEcCCCCCeeeeecCCeeEEEeCCCCceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeE
Q 003370 372 STLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLL 451 (825)
Q Consensus 372 s~i~C~~C~~~S~~~e~F~~LsLpip~~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~ 451 (825)
+-+.|-+-++.|.+.|.||++.|++.
T Consensus 310 syikCvnvnyEsarvedfwdiqlNvK------------------------------------------------------ 335 (1089)
T COG5077 310 SYIKCVNVNYESARVEDFWDIQLNVK------------------------------------------------------ 335 (1089)
T ss_pred ceeeEEEechhhhhHHHHHHHHhccc------------------------------------------------------
Confidence 99999998888888888888777641
Q ss_pred EEeecceeeEeecCcccccccccCCCcEEEEEeccCCCCceeEEEeeecccccccccccCCcceeccccEEEEecCCCCC
Q 003370 452 AEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLS 531 (825)
Q Consensus 452 ~e~~~~~~~k~~~d~~~~~~~i~~~d~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~ 531 (825)
T Consensus 336 -------------------------------------------------------------------------------- 335 (1089)
T COG5077 336 -------------------------------------------------------------------------------- 335 (1089)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeEEEEecCCCCccCCCcc
Q 003370 532 GADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQK 611 (825)
Q Consensus 532 ~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (825)
T Consensus 336 -------------------------------------------------------------------------------- 335 (1089)
T COG5077 336 -------------------------------------------------------------------------------- 335 (1089)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCceEEEEEecCccccccCccccccCccccccccccccccCCCCCHHHHHHhhcCCcccCCCCCCCCccccccc
Q 003370 612 DSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHR 691 (825)
Q Consensus 612 ~~~~~~~~~~~i~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~w~C~~Ck~~~ 691 (825)
..-+|+|.++.+.+.|+|+|+|.|+|..- ..|
T Consensus 336 -----------------------------------------------~~knLqeSfr~yIqvE~l~GdN~Y~ae~~-Glq 367 (1089)
T COG5077 336 -----------------------------------------------GMKNLQESFRRYIQVETLDGDNRYNAEKH-GLQ 367 (1089)
T ss_pred -----------------------------------------------chhhHHHHHHHhhhheeccCCcccccccc-cch
Confidence 11379999999999999999999999864 468
Q ss_pred eEEEEEEeeeCCCeEEEEEeeeEee--cccccccceeeeccCcccccccccccCCC----CceEEEEEEEEEeecCCCCC
Q 003370 692 QATKKLDLWMLPDVLVFHLKRFSYS--RYLKNKLDTFVNFPILNLDLSKYMKSKDG----ESYVYDLFAISNHYGGLGGG 765 (825)
Q Consensus 692 ~A~Kk~~i~~lP~iLiIhLKRF~~~--~~~~~Ki~~~V~FPl~~LDls~~~~~~~~----~~~~YdL~AVv~H~G~l~gG 765 (825)
.|.|-.-+.++|+||-++||||.|+ +.+..||++.-+||+ .+||.||+..... ..+.|.||||.+|.|.+.+|
T Consensus 368 dAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~-eiDl~pfld~da~ksen~d~vY~LygVlVHsGDl~~G 446 (1089)
T COG5077 368 DAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPL-EIDLLPFLDRDADKSENSDAVYVLYGVLVHSGDLHEG 446 (1089)
T ss_pred hhccceeeccCchHHHHHHHHhccccccCceeeecccccCcc-hhccccccCchhhhhcccCcEEEEEEEEEeccccCCc
Confidence 8999999999999999999999997 778899999999995 8999999985432 34899999999999999999
Q ss_pred eEEEEEeeCCCCcEEEeCCCceeecCcCcccC----------------------CCeEEEEEEEecCCc
Q 003370 766 HYTAYAKLIDENRWYHFDDSHVSPVSEGDIKT----------------------SAAYVLFYRRVKSKT 812 (825)
Q Consensus 766 HYtAy~k~~~~~~Wy~fnDs~V~~v~~~~v~s----------------------~~AYvLFY~R~~~~~ 812 (825)
||+|++|-..+|+||+|||.+|+++++.+|.. -+||||.|-|++...
T Consensus 447 HyYallKpe~dg~WykfdDtrVtrat~kevleeNfGgd~~~~~k~r~~~~~kRfmsAYmLvYlRks~~d 515 (1089)
T COG5077 447 HYYALLKPEKDGRWYKFDDTRVTRATEKEVLEENFGGDHPYKDKIRDHSGIKRFMSAYMLVYLRKSMLD 515 (1089)
T ss_pred eEEEEeccccCCCceeecceehhhHHHHHHHHHhcCCCCCCcccccCCchhhhhhhhheeeeehHhHHH
Confidence 99999998889999999999999999888731 269999999998543
No 29
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.9e-41 Score=360.33 Aligned_cols=136 Identities=24% Similarity=0.350 Sum_probs=118.1
Q ss_pred CCHHHHHHhhcCCcccCCCCCCCCccccccceEEEEEEeeeCCC----eEEEEEeeeEeec-------ccccccceeeec
Q 003370 661 ISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPD----VLVFHLKRFSYSR-------YLKNKLDTFVNF 729 (825)
Q Consensus 661 ~sL~dCL~~f~~~E~L~~~d~w~C~~Ck~~~~A~Kk~~i~~lP~----iLiIhLKRF~~~~-------~~~~Ki~~~V~F 729 (825)
++|.+||+.|+.+|.. +.|+|++|++++.|+|++.|+++|+ ||+||||||.+.. ....|++..|.|
T Consensus 117 ~sl~~cL~~~~~~E~~---~~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~~~~~~~~~~v~f 193 (268)
T cd02672 117 STFLQLLKRSLDLEKV---TKAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLPSGKVMQNKVSP 193 (268)
T ss_pred CCHHHHHHHHhhhhhc---ccccccccCcccccEEEEEeecCCCcccceEEEEEeccChhhcccCcceeEEEecCCeecc
Confidence 5899999999999964 4589999999999999999999999 9999999999753 234688899999
Q ss_pred cCcccccccccccCCCCceEEEEEEEEEeecC-CCCCeEEEEEeeCC----CCcEEEeCCCceeecCcCcccCCCeEEEE
Q 003370 730 PILNLDLSKYMKSKDGESYVYDLFAISNHYGG-LGGGHYTAYAKLID----ENRWYHFDDSHVSPVSEGDIKTSAAYVLF 804 (825)
Q Consensus 730 Pl~~LDls~~~~~~~~~~~~YdL~AVv~H~G~-l~gGHYtAy~k~~~----~~~Wy~fnDs~V~~v~~~~v~s~~AYvLF 804 (825)
|. .+|+..+.........+|+|+|||+|.|. .++|||+||+|... .++||.|||..|++|++ .|||||
T Consensus 194 ~~-~~~~~~~~~~~~~~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~~~~~~~~WylFND~~V~~vs~------~aYiLf 266 (268)
T cd02672 194 KA-IDHDKLVKNRGQESIYKYELVGYVCEINDSSRGQHNVVFVIKVNEESTHGRWYLFNDFLVTPVSE------LAYILL 266 (268)
T ss_pred cc-cccchhhhccCCCCCceEEEEEEEEEecCCCCCCcEEEEEEccCCCCCCCcEEEecCeEEEEcCc------hheeee
Confidence 95 67776666555556689999999999995 49999999999754 68999999999999998 899999
Q ss_pred EE
Q 003370 805 YR 806 (825)
Q Consensus 805 Y~ 806 (825)
|+
T Consensus 267 Y~ 268 (268)
T cd02672 267 YQ 268 (268)
T ss_pred cC
Confidence 95
No 30
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-41 Score=371.71 Aligned_cols=150 Identities=36% Similarity=0.686 Sum_probs=138.0
Q ss_pred CHHHHHHhhcCCcccCCCCCCCCccccccceEEEEEEeeeCCCeEEEEEeeeEee--cccccccceeeeccCcccccccc
Q 003370 662 SLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYS--RYLKNKLDTFVNFPILNLDLSKY 739 (825)
Q Consensus 662 sL~dCL~~f~~~E~L~~~d~w~C~~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~--~~~~~Ki~~~V~FPl~~LDls~~ 739 (825)
+++++|.+|.++|.|++.|.|-|++||+++.|.|-+.|...|-+|.||||||.|+ ...|.|+++.|.|| ..|||..|
T Consensus 215 sieeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp-~~l~ln~~ 293 (1203)
T KOG4598|consen 215 SVEEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFP-DVLDLNDY 293 (1203)
T ss_pred hHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceeeEEeeecccccchheeeeeecccccCc-ccccHHHh
Confidence 7899999999999999999999999999999999999999999999999998876 56789999999999 79999999
Q ss_pred cccCCC------------------------------------------------------------------CceEEEEE
Q 003370 740 MKSKDG------------------------------------------------------------------ESYVYDLF 753 (825)
Q Consensus 740 ~~~~~~------------------------------------------------------------------~~~~YdL~ 753 (825)
+..... ++.+|+|+
T Consensus 294 in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~n~~~g~~~~~~~~~~~~~~sg~~~yelf 373 (1203)
T KOG4598|consen 294 VNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQSPNRYQGSENVCVGQPIDHAAVDDIVKTSGDNVYELF 373 (1203)
T ss_pred hhhccCCcchhHhhhcccccccccccccccCCCCcccCcccccCcccccCccccccCCcCchhhhhhHhhcCCccHHHhh
Confidence 864310 46889999
Q ss_pred EEEEeecCCCCCeEEEEEeeCCCCcEEEeCCCceeecCcCccc-------------CCCeEEEEEEEecCCc
Q 003370 754 AISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIK-------------TSAAYVLFYRRVKSKT 812 (825)
Q Consensus 754 AVv~H~G~l~gGHYtAy~k~~~~~~Wy~fnDs~V~~v~~~~v~-------------s~~AYvLFY~R~~~~~ 812 (825)
||..|.|+..||||.||+|+...+.||+|||.+|+-++..+|. +.+||||.|||.+...
T Consensus 374 ~imihsg~a~gghy~ayik~~d~~~w~~fnd~~v~~~t~~~i~~sfgg~~~~~~~s~tnaymlmyr~id~kr 445 (1203)
T KOG4598|consen 374 SVMVHSGNAAGGHYFAYIKNLDQDRWYVFNDTRVDFATPLEIEKSFGGHPSGWNQSNTNAYMLMYRRIDPKR 445 (1203)
T ss_pred hhheecCCCCCceeeeeecccCcCceEEecCccccccCHHHHHHhhCCCCCCccccCcchhhhhhhhcCccc
Confidence 9999999999999999999999999999999999999988883 4579999999998764
No 31
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-37 Score=333.16 Aligned_cols=146 Identities=25% Similarity=0.405 Sum_probs=118.3
Q ss_pred ccceecCCCchhHHHHHHHHhCChHHHHHHHhcCc-cccccCCCCCchhHHHHHHHHHHHHHhcCC----CCccChHHHH
Q 003370 217 LAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYS-DEINTENPLGMHGELALAFGDLLRKLWSSG----RAAVAPRAFK 291 (825)
Q Consensus 217 ~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~-~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~----~~~i~p~~~~ 291 (825)
.+||.|+||+||+||++|.|++...+..-+....+ ......+| ..++.+++.+|+..|.... ...|+|..|+
T Consensus 303 ~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P---~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk 379 (749)
T COG5207 303 YVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNP---LECLFCQLMKLLSKMKETPDNEYVNGISPLDFK 379 (749)
T ss_pred ccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCC---chhHHHHHHHHHhhccCCCCccccCCcChhhHH
Confidence 89999999999999999999999888776654422 12222333 3578999999999998755 3468999999
Q ss_pred HHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCChHHHHHHHHhhccccCCCcccccceEEEE
Q 003370 292 GKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYK 371 (825)
Q Consensus 292 ~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~d~~~~~~~~~a~~~w~~~~~~~~SiI~~lF~G~~~ 371 (825)
..|++-++.|...+||||+|||.|||+.|.+....... +.|.++|.....
T Consensus 380 ~~igq~h~eFg~~~QQDA~EFLlfLL~kirk~~~S~~~------------------------------~~It~lf~Fe~e 429 (749)
T COG5207 380 MLIGQDHPEFGKFAQQDAHEFLLFLLEKIRKGERSYLI------------------------------PPITSLFEFEVE 429 (749)
T ss_pred HHHcCCchhhhhhhhhhHHHHHHHHHHHHhhccchhcC------------------------------CCcchhhhhhhc
Confidence 99999999999999999999999999999865433322 348899999999
Q ss_pred EEEEcCCCCCeeeeecCCeeEEEe
Q 003370 372 STLVCPVCSKVSITFDPFMYLTLP 395 (825)
Q Consensus 372 s~i~C~~C~~~S~~~e~F~~LsLp 395 (825)
.++.|..|+.++..+++...+.++
T Consensus 430 ~rlsC~~C~~v~ySye~~~~i~i~ 453 (749)
T COG5207 430 RRLSCSGCMDVSYSYESMLMICIF 453 (749)
T ss_pred ceecccccccccccccceEEEEee
Confidence 999999999999887776555444
No 32
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.6e-37 Score=376.93 Aligned_cols=304 Identities=30% Similarity=0.434 Sum_probs=259.1
Q ss_pred CCCCcc-cceecCCCchhHHHHHHHHhCChHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHH
Q 003370 212 GEKGGL-AGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAF 290 (825)
Q Consensus 212 ~~~~g~-~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~ 290 (825)
+..+|. +||.|+||||||||+||+|++++.||+.+.+.-. ..........+..+|+.||..|..+..+++.|..+
T Consensus 164 k~~tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~----~~~~~~~~~~v~~~lq~lF~~LQ~s~~k~Vdt~~~ 239 (1093)
T KOG1863|consen 164 KRLTGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPP----FTGHEDPRRSIPLALQRLFYELQMSKRKYVDTSEL 239 (1093)
T ss_pred hhcCCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCC----CCCcccccchHHHHHHHHHHHHhhcCCCCcCchhh
Confidence 345665 9999999999999999999999999999976521 12222334559999999999999999999999999
Q ss_pred HHHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCChHHHHHHHHhhccccCCCcccccceEEE
Q 003370 291 KGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQY 370 (825)
Q Consensus 291 ~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~d~~~~~~~~~a~~~w~~~~~~~~SiI~~lF~G~~ 370 (825)
...++... ..+.+|||+|||+..|+|.|+..+..... ...|.++|.|.+
T Consensus 240 ~~~~~~~~--~~~~~QqDvqEf~~~l~d~LE~~~~~~~~-----------------------------~~~l~~lf~g~~ 288 (1093)
T KOG1863|consen 240 TKSLGWDS--NDSFEQQDVQEFLTKLLDWLEDSMIDAKV-----------------------------ENTLQDLFTGKM 288 (1093)
T ss_pred hhhhhccc--ccHHhhhhHHHHHHHHHHHHHhhccchhh-----------------------------hhhhhhhhcCCc
Confidence 99998765 56789999999999999999987754331 235899999999
Q ss_pred EEEEEcCCCCCeeeeecCCeeEEEeCCCCceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCccccee
Q 003370 371 KSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLL 450 (825)
Q Consensus 371 ~s~i~C~~C~~~S~~~e~F~~LsLpip~~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~ 450 (825)
.+.+.|..|+..+.+.|.|+++.|++-
T Consensus 289 ~~~i~c~~~~~~s~r~e~f~d~ql~~~----------------------------------------------------- 315 (1093)
T KOG1863|consen 289 KSVIKCIDVDFESSRSESFLDLQLNGK----------------------------------------------------- 315 (1093)
T ss_pred ceEEEEEeeeeeccccccccCcccccc-----------------------------------------------------
Confidence 999999999999988999988877651
Q ss_pred EEEeecceeeEeecCcccccccccCCCcEEEEEeccCCCCceeEEEeeecccccccccccCCcceeccccEEEEecCCCC
Q 003370 451 LAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHL 530 (825)
Q Consensus 451 ~~e~~~~~~~k~~~d~~~~~~~i~~~d~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~ 530 (825)
T Consensus 316 -------------------------------------------------------------------------------- 315 (1093)
T KOG1863|consen 316 -------------------------------------------------------------------------------- 315 (1093)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHHHHHccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeEEEEecCCCCccCCCc
Q 003370 531 SGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQ 610 (825)
Q Consensus 531 ~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (825)
T Consensus 316 -------------------------------------------------------------------------------- 315 (1093)
T KOG1863|consen 316 -------------------------------------------------------------------------------- 315 (1093)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCceEEEEEecCccccccCccccccCccccccccccccccCCCCCHHHHHHhhcCCcccCCCCCCCCcccccc
Q 003370 611 KDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEH 690 (825)
Q Consensus 611 ~~~~~~~~~~~~i~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~w~C~~Ck~~ 690 (825)
...+|.++|+.|+..|+|.+|+. ||..|...
T Consensus 316 ------------------------------------------------g~~nl~~sf~~y~~~E~l~gdn~-~~~~~~~~ 346 (1093)
T KOG1863|consen 316 ------------------------------------------------GVKNLEDSLHLYFEAEILLGDNK-YDAECHGL 346 (1093)
T ss_pred ------------------------------------------------chhhHHHHHHHhhhHHHhcCCcc-ccccccch
Confidence 01258999999999999999998 99999999
Q ss_pred ceEEEEEEeeeCCCeEEEEEeeeEee--cccccccceeeeccCcccccccccccC----CCCceEEEEEEEEEeecCCCC
Q 003370 691 RQATKKLDLWMLPDVLVFHLKRFSYS--RYLKNKLDTFVNFPILNLDLSKYMKSK----DGESYVYDLFAISNHYGGLGG 764 (825)
Q Consensus 691 ~~A~Kk~~i~~lP~iLiIhLKRF~~~--~~~~~Ki~~~V~FPl~~LDls~~~~~~----~~~~~~YdL~AVv~H~G~l~g 764 (825)
+.|.|.+.+.+||+||.|||+||.|+ +....|++....|| ..|+|.+|+..+ ....+.|+|+||..|.|...+
T Consensus 347 ~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~~fp-~~i~~d~~~~~~~~~~~~~~~~y~l~~v~vh~g~~~~ 425 (1093)
T KOG1863|consen 347 QDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKFEFP-LIIDMDRYLSRFKAEESERSAVYSLHAVLVHSGDAHS 425 (1093)
T ss_pred hhhhcceeeccCCchhhhhhhheeeeccCCceeehhhccCCc-cccccchhccccchhhhhccceeccchhhcccccccC
Confidence 99999999999999999999999997 55678999999999 499999997741 112359999999999889999
Q ss_pred CeEEEEEeeCCCCcEEEeCCCceeecCcCcccC----------------CCeEEEEEEEecCCch
Q 003370 765 GHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKT----------------SAAYVLFYRRVKSKTK 813 (825)
Q Consensus 765 GHYtAy~k~~~~~~Wy~fnDs~V~~v~~~~v~s----------------~~AYvLFY~R~~~~~~ 813 (825)
|||++|++....++|+.|||..|+.+++.++.. ..||+|+|-|.+....
T Consensus 426 ghy~~~i~~~~~~~w~kfdd~~v~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~lv~~~~s~~~~ 490 (1093)
T KOG1863|consen 426 GHYVAYINPKLDGKWVKFDDLVVTVVSEKEALEQNYGTEEIELSSTADFKNAYMLVYIRDSCESK 490 (1093)
T ss_pred ccceeeecchhhccceeccCceeeeccHHHHHHhhCCCcchhhhcccccCCcceEEEEecCcHHh
Confidence 999999998889999999999999999766631 1289999999986543
No 33
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.7e-35 Score=304.31 Aligned_cols=123 Identities=23% Similarity=0.441 Sum_probs=108.1
Q ss_pred CCCHHHHHHhhcCCcccCCCCCCCCccccccceEEEEEEeeeCCCeEEEEEeeeEeecccccccceeeeccCcccccccc
Q 003370 660 AISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKY 739 (825)
Q Consensus 660 ~~sL~dCL~~f~~~E~L~~~d~w~C~~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~ 739 (825)
.++|++||+.|++.|. |+++|+|||||||||.++.+...|+++.|.|| ..|||++|
T Consensus 79 ~~tLedcLe~~~~~e~-----------------------i~~lP~vLiIhLKRF~~~~~~~~Kl~~~I~fP-~~Ldl~~~ 134 (241)
T cd02670 79 GITLEQCLEQYFNNSV-----------------------FAKAPSCLIICLKRYGKTEGKAQKMFKKILIP-DEIDIPDF 134 (241)
T ss_pred cCCHHHHHHHHhchhh-----------------------hhhCCCeEEEEEEccccCCCcceeCCcEECCC-CcCCchhh
Confidence 4799999999999997 89999999999999999987778999999999 58999999
Q ss_pred cccCC----------------------CCceEEEEEEEEEeec-CCCCCeEEEEEeeCC-----------CCcEEEeCCC
Q 003370 740 MKSKD----------------------GESYVYDLFAISNHYG-GLGGGHYTAYAKLID-----------ENRWYHFDDS 785 (825)
Q Consensus 740 ~~~~~----------------------~~~~~YdL~AVv~H~G-~l~gGHYtAy~k~~~-----------~~~Wy~fnDs 785 (825)
+.... .....|+|+|||+|+| ++.+||||||+|+.. +++||.|||+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~~~~~~~~~~~~~~~~W~~FDD~ 214 (241)
T cd02670 135 VADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYSLTETDNEAYNAQWVFFDDM 214 (241)
T ss_pred cccccccccccccccccccccccccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECCcccccccccCCCCCeEEEecCc
Confidence 86531 2356899999999999 699999999999865 3899999999
Q ss_pred ceeecCcC------cccCCCeEEEEEE
Q 003370 786 HVSPVSEG------DIKTSAAYVLFYR 806 (825)
Q Consensus 786 ~V~~v~~~------~v~s~~AYvLFY~ 806 (825)
.|+.+... .+.+.+|||||||
T Consensus 215 ~v~~~~~~~~~~~~~~~~~~aYmLFYq 241 (241)
T cd02670 215 ADRDGVSNGFNIPAARLLEDPYMLFYQ 241 (241)
T ss_pred ccccccccccccchhcccCCceEEEeC
Confidence 98887532 5678999999996
No 34
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-34 Score=328.39 Aligned_cols=331 Identities=28% Similarity=0.446 Sum_probs=253.1
Q ss_pred CCcccceecCCCchhHH--HHHHHHhCChHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHHHhcCC--CCccChHH
Q 003370 214 KGGLAGLQNLGNTCFMN--SALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSG--RAAVAPRA 289 (825)
Q Consensus 214 ~~g~~GL~NlGNTCYmN--SvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~--~~~i~p~~ 289 (825)
....-|..|.+++|+.| ++.|.+..+.+++...+.. ........+....+...+..++....... ...+.|..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~~ 305 (587)
T KOG1864|consen 229 NERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLY---LTSLKRSYIIKEELLTCLLDLFSSISSRKKLVGRISPTR 305 (587)
T ss_pred cccccCccccCccccccchhhHHHHHhhhhhcccccch---hhcccchhhhhHHHHHHhhhhccchhhhcccccccCcch
Confidence 45688999999999999 9999999998888544322 11111122233445555555554443322 34689999
Q ss_pred HHHHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCCc--ccccCCCCCChHHHHHHHHh--hccccCCCccccc
Q 003370 290 FKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPY--IEMKDSGGRPDEEVANECWK--NHKARNDSLIVDV 365 (825)
Q Consensus 290 ~~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~--~~~~d~~~~~~~~~a~~~w~--~~~~~~~SiI~~l 365 (825)
|...+++....|..+.|||||||+.++++.++|.+.+...... +....++|..... +.-.|. .+......+++.+
T Consensus 306 ~~~~~~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~-~~~~~~~~~~~~~~~~~v~~l 384 (587)
T KOG1864|consen 306 FISDLIKENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTS-AASWTNKGHHKSLRENWVSKL 384 (587)
T ss_pred hhhhhhhcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccc-cccccccccccccchhHHHHh
Confidence 9999999999999999999999999999999988766542111 1110111111111 111111 3444566789999
Q ss_pred ceEEEEEEEEcCCCCCeeeeecCCeeEEEeCCCCceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCc
Q 003370 366 FQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKI 445 (825)
Q Consensus 366 F~G~~~s~i~C~~C~~~S~~~e~F~~LsLpip~~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~ 445 (825)
|+|++..+..|..|+.++.+.+.|.+++++++..
T Consensus 385 f~g~l~~et~Clsc~t~T~~de~f~D~~~~v~~d---------------------------------------------- 418 (587)
T KOG1864|consen 385 FQGILTNETRCLSCETITSRDEGFLDLSVAVEID---------------------------------------------- 418 (587)
T ss_pred hcCeeeeeeeeccccccccccccccccceecccc----------------------------------------------
Confidence 9999999999999999999999999998886421
Q ss_pred ccceeEEEeecceeeEeecCcccccccccCCCcEEEEEeccCCCCceeEEEeeecccccccccccCCcceeccccEEEEe
Q 003370 446 DEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYL 525 (825)
Q Consensus 446 ~~~l~~~e~~~~~~~k~~~d~~~~~~~i~~~d~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~ 525 (825)
T Consensus 419 -------------------------------------------------------------------------------- 418 (587)
T KOG1864|consen 419 -------------------------------------------------------------------------------- 418 (587)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCHHHHHHHHHHHccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeEEEEecCCCCc
Q 003370 526 EEEHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISS 605 (825)
Q Consensus 526 ~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (825)
T Consensus 419 -------------------------------------------------------------------------------- 418 (587)
T KOG1864|consen 419 -------------------------------------------------------------------------------- 418 (587)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCccCCCCCCCCceEEEEEecCccccccCccccccCccccccccccccccCCCCCHHHHHHhhcCCcccCCCCCCCCc
Q 003370 606 CKPIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCP 685 (825)
Q Consensus 606 ~~~~~~~~~~~~~~~~~i~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~w~C~ 685 (825)
+..++.+||+.|.++|.|.++++++|+
T Consensus 419 -----------------------------------------------------e~~si~~~l~~~~~~e~l~g~nky~c~ 445 (587)
T KOG1864|consen 419 -----------------------------------------------------ENTSITNLLKSFSSTETLSGENKYSCE 445 (587)
T ss_pred -----------------------------------------------------ccccHHHHHHHhcchhhccCCCccccc
Confidence 114789999999999999999999999
Q ss_pred cccccceEEEEEEeeeCCCeEEEEEeeeEeecc--cccccceeeeccCcccccccccccCCCCceEEEEEEEEEeec-CC
Q 003370 686 QCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRY--LKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYG-GL 762 (825)
Q Consensus 686 ~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~~~--~~~Ki~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVv~H~G-~l 762 (825)
+|...|.|.|.+.+.++|.+|+||||||+|.+. ...|+...|.||+ .|.+...+.....+..+|+|+|||+|.| ++
T Consensus 446 ~c~s~qeae~~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~~v~~pl-el~l~~~~~~~~~~~~~Y~L~avVvH~G~~p 524 (587)
T KOG1864|consen 446 NCCSLQEAERRLKIKKLPYVLTLHLKRFKYSEQQNRYTKLLYRVVFPL-ELRLKDTLKDDNNPDRKYDLVAVVVHLGSTP 524 (587)
T ss_pred ccCchhhHHHhccccCCcceeeeehhcccccccccccccccccccccc-ceeeccccccccCccceeeEEEEEEeccCCC
Confidence 999999999999999999999999999999853 3479999999996 7888666555443347999999999999 99
Q ss_pred CCCeEEEEEeeCCCCcEEEeCCCceeecCcCccc---CCCeEEEEEEEec
Q 003370 763 GGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIK---TSAAYVLFYRRVK 809 (825)
Q Consensus 763 ~gGHYtAy~k~~~~~~Wy~fnDs~V~~v~~~~v~---s~~AYvLFY~R~~ 809 (825)
..|||+||+|. .+..|+.|||..|..++++.|. ..+.|++||.+..
T Consensus 525 ~~GHYia~~r~-~~~nWl~fdD~~V~~~s~~~v~~~~~~s~~~~~~~~~~ 573 (587)
T KOG1864|consen 525 NRGHYVAYVKS-LDFNWLLFDDDNVEPISEEPVSEFTGSSGDTLFYYVQV 573 (587)
T ss_pred CCcceEEEEee-CCCCceecccccccccCcchhhhccCCCccceeeeEEe
Confidence 99999999996 3333999999999999988884 4667887777654
No 35
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.97 E-value=1.6e-30 Score=282.45 Aligned_cols=284 Identities=23% Similarity=0.391 Sum_probs=233.4
Q ss_pred cceecCCCchhHHHHHHHHhCChHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHHHh-cCCCCccChHHHHHHHhh
Q 003370 218 AGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLW-SSGRAAVAPRAFKGKLAR 296 (825)
Q Consensus 218 ~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~-~~~~~~i~p~~~~~~l~~ 296 (825)
.||.|.+++||+||+||+|+.+|++++.++++. + .....+|+++|+-||.+|. .+....+.+..|..+++.
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~--~------c~~e~cL~cELgfLf~ml~~~~~g~~cq~sNflr~l~~ 72 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL--E------CPKEFCLLCELGFLFDMLDSKAKGINCQASNFLRALSW 72 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc--C------CCccccHHHHHHHHHHHhhhhcCCCcChHHHHHHHHhc
Confidence 599999999999999999999999999999764 1 1224579999999999999 777888999999999987
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCChHHHHHHHHhhccccCCCcccccceEEEEEEEEc
Q 003370 297 FAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVC 376 (825)
Q Consensus 297 ~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~d~~~~~~~~~a~~~w~~~~~~~~SiI~~lF~G~~~s~i~C 376 (825)
......-+.|+|.|+|+.|||+.|+.++........... ........+.|.++|+.......+|
T Consensus 73 ~~~a~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~----------------~~~~~~~~~~i~~~f~~~~~~~~~c 136 (295)
T PF13423_consen 73 IPEAAALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTS----------------ENSSSSPESSISQLFGTSFETTIRC 136 (295)
T ss_pred CHHHHhcchhHHHHHHHHHHHHHHhHHHHhcCccccccc----------------ccccCCCcchHHHHhCcceeeeecc
Confidence 754455567999999999999999999877654211100 0011233467999999999999999
Q ss_pred CCCCCeeeeecCCeeEEEeCCCCceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeEEEeec
Q 003370 377 PVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYN 456 (825)
Q Consensus 377 ~~C~~~S~~~e~F~~LsLpip~~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~ 456 (825)
..|++.+.+.++...+.|..|..
T Consensus 137 ~~c~~~~~~~~~~~~~~l~yp~~--------------------------------------------------------- 159 (295)
T PF13423_consen 137 TSCGHESVKESSTLVLDLPYPPS--------------------------------------------------------- 159 (295)
T ss_pred cccCCeEEeecceeeeeccCCCC---------------------------------------------------------
Confidence 99999998887766665554421
Q ss_pred ceeeEeecCcccccccccCCCcEEEEEeccCCCCceeEEEeeecccccccccccCCcceeccccEEEEecCCCCCHHHHH
Q 003370 457 HQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADID 536 (825)
Q Consensus 457 ~~~~k~~~d~~~~~~~i~~~d~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~~l~ 536 (825)
T Consensus 160 -------------------------------------------------------------------------------- 159 (295)
T PF13423_consen 160 -------------------------------------------------------------------------------- 159 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeEEEEecCCCCccCCCccCCCCC
Q 003370 537 IAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSILK 616 (825)
Q Consensus 537 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (825)
T Consensus 160 -------------------------------------------------------------------------------- 159 (295)
T PF13423_consen 160 -------------------------------------------------------------------------------- 159 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCceEEEEEecCccccccCccccccCccccccccccccccCCCCCHHHHHHhhcCCcccCCCCCCCCccccccceEEEE
Q 003370 617 PGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKK 696 (825)
Q Consensus 617 ~~~~~~i~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~w~C~~Ck~~~~A~Kk 696 (825)
...+++.++|+..+..|.... ..|++|++.+.+..+
T Consensus 160 -----------------------------------------~~~~tf~~~Le~sl~~e~~~~---a~C~~C~~~~~~~~~ 195 (295)
T PF13423_consen 160 -----------------------------------------NSNVTFSQVLEHSLNREQQTR---AWCEKCNKYQPTEQR 195 (295)
T ss_pred -----------------------------------------CccchHHHHHHHHHhhccccc---ccccccccccceeee
Confidence 123588899999998888754 789999999999999
Q ss_pred EEeeeCCCeEEEEEeeeEeecccccccceeeeccCcccccccccccC-------CCCceEEEEEEEEEeec-CCCCCeEE
Q 003370 697 LDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSK-------DGESYVYDLFAISNHYG-GLGGGHYT 768 (825)
Q Consensus 697 ~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~~~~-------~~~~~~YdL~AVv~H~G-~l~gGHYt 768 (825)
..|.+||+||.|.++|.+....+..|....+.+|. .+++..++... .....+|+|.|+|+|.| +..+|||+
T Consensus 196 r~i~~LPpVL~In~~~~~~~~~w~~~~~~~~~ip~-~i~~~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~~~~HlV 274 (295)
T PF13423_consen 196 RTIRSLPPVLSINLNRYSEEEFWPKKNWLKIWIPP-SINLPHFIADDSQSDLEGESGIFKYELRSMVCHIGDSIESGHLV 274 (295)
T ss_pred eeccCCCcEEEEEccCCCcccccccccCCceecce-eeeccccccccccccccCCCCceEEEEEEEEEEecCCCCCCceE
Confidence 99999999999999999999777889999999995 69999888654 23567999999999999 69999999
Q ss_pred EEEeeCC--CCcEEEeCCCce
Q 003370 769 AYAKLID--ENRWYHFDDSHV 787 (825)
Q Consensus 769 Ay~k~~~--~~~Wy~fnDs~V 787 (825)
||+|... +.+||.|||-.|
T Consensus 275 s~vrv~~~~~~~W~lFNDflV 295 (295)
T PF13423_consen 275 SLVRVGPSDDSQWYLFNDFLV 295 (295)
T ss_pred EEEEcCCCCCCcEEEECcEeC
Confidence 9999753 379999999765
No 36
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.1e-29 Score=265.13 Aligned_cols=142 Identities=26% Similarity=0.423 Sum_probs=111.4
Q ss_pred HHHHHHhhcCCcccCCCCCCCCccccccceEEEEEEeeeCCCeEEEEEeeeEee-cccccccceeeeccCcccccccccc
Q 003370 663 LFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYS-RYLKNKLDTFVNFPILNLDLSKYMK 741 (825)
Q Consensus 663 L~dCL~~f~~~E~L~~~d~w~C~~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~-~~~~~Ki~~~V~FPl~~LDls~~~~ 741 (825)
+.++|+.|...|.+.+ |.-+ -+..+.|.+++.|.+||++|++|||||.|. ....+|+.+.++||- .|.+..-+.
T Consensus 267 v~~ales~~~re~lp~---~st~-s~~eV~~s~q~~leklp~vlilhlkrF~ye~tgg~~k~~K~i~~~~-~l~i~~~~~ 341 (420)
T KOG1871|consen 267 VQDALESLVARESLPG---YSTK-SGQEVEASSQTTLEKLPPVLILHLKRFVYEKTGGARKLGKKIEYPW-TLKISKNCF 341 (420)
T ss_pred HHHHhhccChhhcccc---eecC-CCCeechhhhhhHhhcchhhhhhhhHHHHHhccchhhhchhhhccc-eeeechhhh
Confidence 3444444444454433 2222 456678899999999999999999999998 556789999999994 777765444
Q ss_pred cCC------CCceEEEEEEEEEeec-CCCCCeEEEEEeeCCCCcEEEeCCCceeecCcCccc----CCCeEEEEEEEec
Q 003370 742 SKD------GESYVYDLFAISNHYG-GLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIK----TSAAYVLFYRRVK 809 (825)
Q Consensus 742 ~~~------~~~~~YdL~AVv~H~G-~l~gGHYtAy~k~~~~~~Wy~fnDs~V~~v~~~~v~----s~~AYvLFY~R~~ 809 (825)
... .....|+|.||+.|.| +..+|||++-+.+..-+.|+.+||..|..+..++|. +..||+|.|+|.+
T Consensus 342 s~gvk~~~~~~~~~yks~~vvyhtgtsatvghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv~~~t~~r~~yllyY~~~d 420 (420)
T KOG1871|consen 342 SQGLKIRILIATRPYKSLAVVYHTGTSATVGHYLEDVSRSVPSGWQRIDDALILFVAQEDVEKVTGSRTPYLLYYIEAD 420 (420)
T ss_pred ccccchhhhccccccceEEEEEecccccccCceEEeeeecccCceeEeccceeeeccHhhhccccCccchheeEeeecC
Confidence 211 1234699999999999 899999999999888899999999999999988886 3579999999874
No 37
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.96 E-value=5.4e-29 Score=260.55 Aligned_cols=303 Identities=29% Similarity=0.461 Sum_probs=241.1
Q ss_pred CCCCcccceecCCCchhHHHHHHHHhCChHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHHHhcCC--CCccChHH
Q 003370 212 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSG--RAAVAPRA 289 (825)
Q Consensus 212 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~--~~~i~p~~ 289 (825)
...+|.+||.|+-++=|.|++||+|+|.+|+|+||+.. .|+....+.+...|+.|++++|++. ...++|.+
T Consensus 129 tYLpG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~-------~n~~d~~~~lv~rl~~l~rklw~~r~fk~hvSphe 201 (442)
T KOG2026|consen 129 TYLPGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLE-------ENYFDNLTELVQRLGELIRKLWNPRNFKGHVSPHE 201 (442)
T ss_pred cceeeeeccchhhhHHHHHHHHHHHhccchhhhhhccc-------ccccchhHHHHHHHHHHHHHhcChhhhcccCCHHH
Confidence 45799999999999999999999999999999999864 2344557889999999999999976 47899999
Q ss_pred HHHHHhhhC-CCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCChHHHHHHHHhhccccCCCcccccceE
Q 003370 290 FKGKLARFA-PQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQG 368 (825)
Q Consensus 290 ~~~~l~~~~-~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~d~~~~~~~~~a~~~w~~~~~~~~SiI~~lF~G 368 (825)
|.+++.... ..|..++|-|+.|||+|||+.||.+++..++ ..|||+..|+|
T Consensus 202 ~lqaV~~~s~k~f~i~~q~DpveFlswllntlhs~l~~~k~----------------------------~~SIi~~~fqG 253 (442)
T KOG2026|consen 202 FLQAVMKLSKKRFRIGQQSDPVEFLSWLLNTLHSDLRGSKK----------------------------ASSIIHKSFQG 253 (442)
T ss_pred HHHHHHHHhhhheecCCCCCHHHHHHHHHHHHHHHhCCCCC----------------------------chhHhhHhhcc
Confidence 999997654 5799999999999999999999999976542 24899999999
Q ss_pred EEEEEEEcCC----CCCeeeeecCCeeEEEeCCCCceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCC
Q 003370 369 QYKSTLVCPV----CSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLK 444 (825)
Q Consensus 369 ~~~s~i~C~~----C~~~S~~~e~F~~LsLpip~~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~ 444 (825)
.++-.-+=.. -....+..-||++|+|+||...-
T Consensus 254 ~~ri~k~~~~~~~~~~~~~i~~~~Fl~LtLDLP~~pl------------------------------------------- 290 (442)
T KOG2026|consen 254 EVRIVKEKQGEASENENKEISVMPFLYLTLDLPPPPL------------------------------------------- 290 (442)
T ss_pred eEEeeeeccccccccccceEEEEeeEEEEecCCCCCc-------------------------------------------
Confidence 8876554433 22344667899999999996420
Q ss_pred cccceeEEEeecceeeEeecCcccccccccCCCcEEEEEeccCCCCceeEEEeeecccccccccccCCcceeccccEEEE
Q 003370 445 IDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTY 524 (825)
Q Consensus 445 ~~~~l~~~e~~~~~~~k~~~d~~~~~~~i~~~d~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~ 524 (825)
|.|..
T Consensus 291 ------------------fkD~~--------------------------------------------------------- 295 (442)
T KOG2026|consen 291 ------------------FKDVM--------------------------------------------------------- 295 (442)
T ss_pred ------------------ccchh---------------------------------------------------------
Confidence 00000
Q ss_pred ecCCCCCHHHHHHHHHHHccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeEEEEecCCCC
Q 003370 525 LEEEHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERIS 604 (825)
Q Consensus 525 ~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (825)
+
T Consensus 296 -----------------------------------e-------------------------------------------- 296 (442)
T KOG2026|consen 296 -----------------------------------E-------------------------------------------- 296 (442)
T ss_pred -----------------------------------h--------------------------------------------
Confidence 0
Q ss_pred ccCCCccCCCCCCCCceEEEEEecCccccccCccccccCccccccccccccccCCCCCHHHHHHhhcCCcccCCCCCCCC
Q 003370 605 SCKPIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYC 684 (825)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~i~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~w~C 684 (825)
+..-+.+.|.+.|+.|..+..-+-
T Consensus 297 --------------------------------------------------~niiPQV~l~~lL~Kf~g~t~~e~------ 320 (442)
T KOG2026|consen 297 --------------------------------------------------KNIIPQVALFDLLKKFDGETVTEV------ 320 (442)
T ss_pred --------------------------------------------------hcccccchHHHHHHHhcCceeeee------
Confidence 000123678888888865433210
Q ss_pred ccccccceEEEEEEeeeCCCeEEEEEeeeEeecccccccceeeeccCccccccccccc---CCCCceEEEEEEEEEeecC
Q 003370 685 PQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKS---KDGESYVYDLFAISNHYGG 761 (825)
Q Consensus 685 ~~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~~~---~~~~~~~YdL~AVv~H~G~ 761 (825)
.....| +++.+.++|++||+|+|||.-+.+..+|..|.|+||+..+|+.+.+.. ....-..|+|.|-+.|-
T Consensus 321 ---~~~~~~-~rf~l~k~P~ylifh~~rF~kNn~f~ekNpTl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~i~~-- 394 (442)
T KOG2026|consen 321 ---VTPKLA-MRFRLTKLPRYLIFHMKRFKKNNFFKEKNPTLVEFPYSEVDILHVLDRLKAVNHKVTQYSLVANAIHE-- 394 (442)
T ss_pred ---cchhhh-hheeeecCCceEEEEeeeccccCcccccCCceeeccCCccchhhhhhhcccccCccccccchhhhhcC--
Confidence 112234 889999999999999999999999999999999999888888876542 22233679999988886
Q ss_pred CCCCeEEEEEeeCCCCcEEEeCCCceeecCcCcccCCCeEEEEEEEe
Q 003370 762 LGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRV 808 (825)
Q Consensus 762 l~gGHYtAy~k~~~~~~Wy~fnDs~V~~v~~~~v~s~~AYvLFY~R~ 808 (825)
-.-|||...+++..+++||..+|-+|++..++.|.-+.+||-.|++.
T Consensus 395 ~e~~~~riqi~~~~s~kW~eiqdl~v~e~~~qmi~L~Es~iQiwe~~ 441 (442)
T KOG2026|consen 395 DEDGNFRIQIYDNSSEKWYEIQDLHVTERLPQMIFLKESFIQIWEKQ 441 (442)
T ss_pred cccCceEEEEEeCCCcceEEecccchhhhhhHHHHHHHHHHHHHhcc
Confidence 78899999999999999999999999999999998899999888875
No 38
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.5e-27 Score=254.00 Aligned_cols=153 Identities=24% Similarity=0.300 Sum_probs=116.6
Q ss_pred CCcccceecCCCchhHHHHHHHHhCChHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHHH
Q 003370 214 KGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGK 293 (825)
Q Consensus 214 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~ 293 (825)
.+-++||.|+|||||||+.+|||-..|+++.-+... ......+........+..+++.+|+.|.++ .++.|..+...
T Consensus 102 ~~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~-~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~--~~v~pi~llqt 178 (473)
T KOG1872|consen 102 LPLPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLY-KRKRGRGDTWERRRRISIETRTCFRPLCEK--GAVAPINLLQT 178 (473)
T ss_pred ccCCccccchhHHHHhhhhhhhhhcCccCcchhhcc-chhccCCchhhhhhhHHHHHHHHHHhhhcc--CCcchHHHHHH
Confidence 345779999999999999999999999999887543 222222232333567889999999999886 89999999999
Q ss_pred HhhhCCCCCC------CCCCCHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCChHHHHHHHHhhccccCCCcccccce
Q 003370 294 LARFAPQFSG------YNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQ 367 (825)
Q Consensus 294 l~~~~~~F~~------~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~d~~~~~~~~~a~~~w~~~~~~~~SiI~~lF~ 367 (825)
+.+..|+|.- +.||||.|+...++-.+|+-+......+ ++.+.+.++|.
T Consensus 179 l~~~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~~-------------------------~~~~~~d~~f~ 233 (473)
T KOG1872|consen 179 LSSQYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEAP-------------------------CLEAEAAAGFG 233 (473)
T ss_pred HHHHhHHHHHHhhhhhHHHHHHhHhHHHhhhheecccccccccc-------------------------chhHHHHHhhc
Confidence 9999999975 9999999999999999997664332111 23456888999
Q ss_pred EEEEEEEEcCCCCCeeee--ecCCeeEEE
Q 003370 368 GQYKSTLVCPVCSKVSIT--FDPFMYLTL 394 (825)
Q Consensus 368 G~~~s~i~C~~C~~~S~~--~e~F~~LsL 394 (825)
+++..+..|.+-...... .|.|..|+.
T Consensus 234 ~~~~~t~~~~e~e~~~~~~~~E~~~~L~c 262 (473)
T KOG1872|consen 234 AEFSTTMSCSEGEDEGGGAGRELVDQLKC 262 (473)
T ss_pred cccccceeeccCcccccccccccccccce
Confidence 999999999876655433 444444443
No 39
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.53 E-value=7.8e-14 Score=160.09 Aligned_cols=123 Identities=22% Similarity=0.354 Sum_probs=97.6
Q ss_pred CCCccccccceEEEEEEeeeCCCeEEEEEeeeEee--ccccc--ccceeeeccCcccccccccc----------cC----
Q 003370 682 WYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYS--RYLKN--KLDTFVNFPILNLDLSKYMK----------SK---- 743 (825)
Q Consensus 682 w~C~~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~--~~~~~--Ki~~~V~FPl~~LDls~~~~----------~~---- 743 (825)
-.|+.|++++..+.+..+-.||++|.|...-+... .+++. |.-..|.+| +.+-|..-=. ..
T Consensus 702 ~~C~~C~k~ep~~q~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP-~~~~~~~~k~~~~~v~~~s~~~~~~~ 780 (1118)
T KOG1275|consen 702 AWCETCTKPEPTSQKKNVRSLPDCLSINTCLNVHELVDFWARQNKLLEDVWLP-EWFHMIISKNKAQLVSTISDLDVSPL 780 (1118)
T ss_pred cccccccCCCCcccccccccCcceeeeeeeccchhhhhhHHHhhccccccccc-hheeEEEecccceeeeeeccccCCCC
Confidence 47999999999999999999999999998887764 34443 556778999 4666643110 00
Q ss_pred ----CCCceEEEEEEEEEeec-CCCCCeEEEEEee--------CCCCcEEEeCCCceeecCcCcccC-----CCeEEEEE
Q 003370 744 ----DGESYVYDLFAISNHYG-GLGGGHYTAYAKL--------IDENRWYHFDDSHVSPVSEGDIKT-----SAAYVLFY 805 (825)
Q Consensus 744 ----~~~~~~YdL~AVv~H~G-~l~gGHYtAy~k~--------~~~~~Wy~fnDs~V~~v~~~~v~s-----~~AYvLFY 805 (825)
+..-.+|+|.|+|.|.| +-+.+|.++++|. ..+++||.|||-.|+++++++.+. +-+-||+|
T Consensus 781 ~~~d~~~~~vYeL~a~V~~I~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl~~~~~WKvP~Il~Y 860 (1118)
T KOG1275|consen 781 PDYDEPSAVVYELDAMVHAIGDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEALHFDGPWKVPAILYY 860 (1118)
T ss_pred ccccCCceEEEEeeeEEEEeccCCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHheEeccCccCcEEEEE
Confidence 11237899999999999 7799999999995 245799999999999999888754 67999999
No 40
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=99.46 E-value=8.1e-14 Score=119.92 Aligned_cols=82 Identities=26% Similarity=0.323 Sum_probs=63.7
Q ss_pred ceEEeeccC--CC-ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEE
Q 003370 62 CLKLIDSRD--NS-QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 138 (825)
Q Consensus 62 ~l~l~~~~~--~~-~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E 138 (825)
.|++|+.++ .+ ..+.+||+.|||+.+.+.+|++|+| .+++|||++++.++. ++|.+...||+||+|.+||.||+|
T Consensus 1 ~~kLC~~~~~~l~~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~-e~L~~~~~Tv~da~L~~gQ~vliE 78 (88)
T PF14836_consen 1 SLKLCVPSNVDLQSVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSY-ELLNNPEITVEDAGLYDGQVVLIE 78 (88)
T ss_dssp -EEEEETTE--CCEEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCE-EEE--TTSBTTTTT--TTEEEEEE
T ss_pred CceeccCCCcccccHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcch-hhhCCCCccHHHccCcCCCEEEEE
Confidence 378998877 33 4589999999999999999999999 778999999999988 999999999999999999999999
Q ss_pred EEe-cCce
Q 003370 139 VQV-DNGI 145 (825)
Q Consensus 139 ~~~-~~~~ 145 (825)
+++ ||+|
T Consensus 79 ~rn~DGtW 86 (88)
T PF14836_consen 79 ERNEDGTW 86 (88)
T ss_dssp E--TTS--
T ss_pred eeccCCCC
Confidence 996 5554
No 41
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=98.06 E-value=4.1e-05 Score=79.14 Aligned_cols=143 Identities=20% Similarity=0.263 Sum_probs=87.6
Q ss_pred CCeeEEEeCCCC---ceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCc--ccceeEEEeecceeeEe
Q 003370 388 PFMYLTLPLPST---VTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKI--DEGLLLAEVYNHQIFRF 462 (825)
Q Consensus 388 ~F~~LsLpip~~---~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~--~~~l~~~e~~~~~~~k~ 462 (825)
++.+--|+||.. ..+.+.|+++..... .--.+.+.|||++++.||++.+.+.+++++ ..++.+.|+++++|+++
T Consensus 2 ~l~YevL~i~l~ElE~kk~~kv~w~~~~~~-~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~ 80 (213)
T PF14533_consen 2 TLYYEVLDIPLKELENKKQFKVTWLNDGLK-EEQEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKI 80 (213)
T ss_dssp EEEEEE-SS-HHHHHSB--EEEEEE-TTS--EE-EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEE
T ss_pred ceEEEecCCCHHHHhCceEEEEEEECCCCc-ceeEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEee
Confidence 455666777764 466777777743322 224689999999999999999999999865 36899999999999999
Q ss_pred ecCcccccccccCCCcEEEEEeccCC-----C--CceeEEEeeecccccccccccCCcceeccccEEEEecCCCCCHHHH
Q 003370 463 FENPAELISSIKDDEHIVAYRFDRKQ-----G--GKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADI 535 (825)
Q Consensus 463 ~~d~~~~~~~i~~~d~i~~y~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~~l 535 (825)
+. .+..+..|.+...+++-++|... . +...++++|--.+. ...||.||++.+. +.-+..++
T Consensus 81 ~~-~d~~i~~l~~~~~~r~E~ip~ee~~~~~~~~~~~li~V~hf~k~~----------~~~hGiPF~f~v~-~gE~f~~t 148 (213)
T PF14533_consen 81 LS-EDEPISSLNDYITLRIEEIPEEELNLDDESEGEKLIPVFHFHKDP----------SRTHGIPFLFVVK-PGETFSDT 148 (213)
T ss_dssp E--TTSBGGGS--TTEEEEEE--GGGSS--TT--TEEEEEEEEESSST----------T-EEEEEEEEEEE-TT--HHHH
T ss_pred cC-CCCchhhccCcceeeeecCChHHhhcccccccceEEEEEEEecCc----------cccCCCCEEEEee-CCCcHHHH
Confidence 99 67778888666667888888764 1 23557787763322 2789999999996 44466666
Q ss_pred HHHHHHHc
Q 003370 536 DIAVSKLL 543 (825)
Q Consensus 536 ~~~v~~~~ 543 (825)
...+.+++
T Consensus 149 K~Rl~~rl 156 (213)
T PF14533_consen 149 KERLQKRL 156 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666665
No 42
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=97.30 E-value=0.002 Score=66.48 Aligned_cols=82 Identities=20% Similarity=0.392 Sum_probs=58.7
Q ss_pred CCCccccccceEEEEEEeeeCCCeEEEEEeeeEeecccccccceeeeccCcccccccccccCCCCceEEEEEEEEEeecC
Q 003370 682 WYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGG 761 (825)
Q Consensus 682 w~C~~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVv~H~G~ 761 (825)
--|++|+.+.+ .++|.+.++|+|+.+|+- .+...+.-..-+|-+ +...|..-+||-..-.
T Consensus 171 ~pCn~C~~ksQ-~rkMvlekv~~vfmLHFV-----eGLP~ndl~~ysF~f--------------eg~~Y~Vt~VIQY~~~ 230 (275)
T PF15499_consen 171 GPCNSCNSKSQ-RRKMVLEKVPPVFMLHFV-----EGLPHNDLQHYSFHF--------------EGCLYQVTSVIQYQAN 230 (275)
T ss_pred CCCcccCChHH-hHhhhhhcCchhhhhhhh-----ccCCccCCCccceee--------------cCeeEEEEEEEEEecc
Confidence 35999987653 678999999999999963 222211111122221 3467999999987665
Q ss_pred CCCCeEEEEEeeCCCCcEEEeCCCc
Q 003370 762 LGGGHYTAYAKLIDENRWYHFDDSH 786 (825)
Q Consensus 762 l~gGHYtAy~k~~~~~~Wy~fnDs~ 786 (825)
.-|+++++++ .+|.|..+||-.
T Consensus 231 --~~HFvtWi~~-~dGsWLecDDLk 252 (275)
T PF15499_consen 231 --LNHFVTWIRD-SDGSWLECDDLK 252 (275)
T ss_pred --CceeEEEEEc-CCCCeEeeccCC
Confidence 4599999998 888899999976
No 43
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.001 Score=78.08 Aligned_cols=105 Identities=21% Similarity=0.245 Sum_probs=58.6
Q ss_pred eecCCCchhHHHHHHHHhCChHHHHHHHhcCc----------cccccCCCCCchhHHHHHHHHHHHHHhcCCCCcc--Ch
Q 003370 220 LQNLGNTCFMNSALQCLVHTPDLAQYFLGDYS----------DEINTENPLGMHGELALAFGDLLRKLWSSGRAAV--AP 287 (825)
Q Consensus 220 L~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~----------~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i--~p 287 (825)
|.|.|||||.||+||||..+|+|+--+...+. ...+.....-.......+....+... ......+ +-
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~ 112 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKN-SSSNESFNLSV 112 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhcc-CCccccccchH
Confidence 99999999999999999999999988765411 11111111101111111111111111 1111122 22
Q ss_pred HHHHHHH---hhhCCCCCCCCCCCHHHHHHHHHHHHHHHhh
Q 003370 288 RAFKGKL---ARFAPQFSGYNQHDSQELLAFLLDGLHEDLN 325 (825)
Q Consensus 288 ~~~~~~l---~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~ 325 (825)
..+...+ .+....|....|+||++|+.-|+-.+..-+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~~ 153 (587)
T KOG1864|consen 113 TQLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVMG 153 (587)
T ss_pred HHHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhcc
Confidence 2222222 3344468889999999999988877765543
No 44
>smart00695 DUSP Domain in ubiquitin-specific proteases.
Probab=96.87 E-value=0.00064 Score=59.70 Aligned_cols=28 Identities=32% Similarity=0.861 Sum_probs=24.2
Q ss_pred EEEEehHHHHHHHHhccCceeeeeccCCCccccccCC-CeeeeEee
Q 003370 3 MVVVKAMIWKCVEIWKKGRTMFWYLSKSGKSFFVGGP-ALPRKMIS 47 (825)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~y~ggp-~I~R~Vi~ 47 (825)
|++||+.+|++| ..|||||| +|.|+||.
T Consensus 57 y~~V~~~vW~~l-----------------~~~YGggp~~i~R~~i~ 85 (86)
T smart00695 57 YVLIPEELWNKL-----------------VSWYGGGPGPIPRKVVC 85 (86)
T ss_pred EEEeCHHHHHHH-----------------HHHHCCCCccceEEeec
Confidence 799999999999 55667778 79999985
No 45
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=95.81 E-value=0.037 Score=46.73 Aligned_cols=62 Identities=8% Similarity=0.015 Sum_probs=51.2
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEE
Q 003370 70 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 137 (825)
Q Consensus 70 ~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~ 137 (825)
......+.++..+||.+|+.++....+++.++.|||. . + ..|.+...+|+++++..+..|+|
T Consensus 8 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~-~----G-k~L~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 8 SETTFSLDVDPDLELENFKALCEAESGIPASQQQLIY-N----G-RELVDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred CCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEE-C----C-eEccCCcccHHHcCCCCCCEEEE
Confidence 3344678899999999999999999999999999993 2 2 45666667999999999988776
No 46
>PTZ00044 ubiquitin; Provisional
Probab=95.69 E-value=0.053 Score=46.17 Aligned_cols=65 Identities=15% Similarity=0.262 Sum_probs=53.7
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEe
Q 003370 70 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 141 (825)
Q Consensus 70 ~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~ 141 (825)
+....++.++..+||.+|+.++.+..++++++.||| |.+ ..|. .+.+|.++++..+..|.+-++.
T Consensus 9 ~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~-~~g-----~~L~-d~~~l~~~~i~~~~~i~l~~~~ 73 (76)
T PTZ00044 9 TGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLI-YSG-----KQMS-DDLKLSDYKVVPGSTIHMVLQL 73 (76)
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEE-ECC-----EEcc-CCCcHHHcCCCCCCEEEEEEEc
Confidence 344567899999999999999999999999999999 443 3454 5679999999999887776664
No 47
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=95.52 E-value=0.053 Score=47.70 Aligned_cols=66 Identities=24% Similarity=0.238 Sum_probs=51.4
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccC-cccccCccCccCCHHHHhccCCCeEEEE
Q 003370 73 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNK-QRSTSPLDVSDQTLDDAMLQMDQDILLE 138 (825)
Q Consensus 73 ~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~-~~~~~~l~~~~~tl~~~~~~~~~~~~~E 138 (825)
.....|++..||.+|+.++-+++|++++..||-.+... ......+.+.+++|..+|+.+|..|.+.
T Consensus 15 ~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 15 SVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 45789999999999999999999999999888765222 2222456778999999999999887765
No 48
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=95.03 E-value=0.087 Score=46.04 Aligned_cols=65 Identities=17% Similarity=0.115 Sum_probs=54.3
Q ss_pred eEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEE
Q 003370 74 TVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 138 (825)
Q Consensus 74 ~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E 138 (825)
...+|+...||.+|++++-..+++++...||..+.+.......|.+.+++|..+++.+|..|.+.
T Consensus 15 ~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 15 FEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred eeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 45779999999999999999999999999997655543332457788899999999999988775
No 49
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=94.74 E-value=0.18 Score=42.69 Aligned_cols=64 Identities=19% Similarity=0.305 Sum_probs=51.7
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEe
Q 003370 71 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 141 (825)
Q Consensus 71 ~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~ 141 (825)
.....+.++...||.+|++++.+..+++++..||+ |.+ ..|. .+.||.++++.++..|-+-++.
T Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~-~~g-----~~L~-d~~tl~~~~i~~g~~i~l~~~~ 73 (76)
T cd01806 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI-YSG-----KQMN-DDKTAADYKLEGGSVLHLVLAL 73 (76)
T ss_pred CCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEE-ECC-----eEcc-CCCCHHHcCCCCCCEEEEEEEc
Confidence 34456789999999999999999999999999999 442 3443 5689999999999877766554
No 50
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=94.62 E-value=0.13 Score=43.64 Aligned_cols=63 Identities=21% Similarity=0.317 Sum_probs=50.7
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEE
Q 003370 70 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEV 139 (825)
Q Consensus 70 ~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~ 139 (825)
+....++.++..+||.+|+++++...++++++.||+ |.+ ..|. .+.||.++++..+..+.+=+
T Consensus 9 ~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~-~~G-----~~L~-d~~~L~~~~i~~~~~l~l~~ 71 (74)
T cd01807 9 QGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLL-FKG-----KALA-DDKRLSDYSIGPNAKLNLVV 71 (74)
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEE-ECC-----EECC-CCCCHHHCCCCCCCEEEEEE
Confidence 344557889999999999999999999999999998 333 4454 46899999999988776543
No 51
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=94.40 E-value=0.15 Score=42.58 Aligned_cols=61 Identities=16% Similarity=0.229 Sum_probs=49.3
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEE
Q 003370 71 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 138 (825)
Q Consensus 71 ~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E 138 (825)
.....+.++..+|+.+|++.+.+..+++++..||+. . . ..|. .+++|.++++.++..|.+.
T Consensus 9 g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~-~----g-~~l~-d~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 9 GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIF-K----G-KERD-DAETLDMSGVKDGSKVMLL 69 (71)
T ss_pred CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEee-C----C-cccC-ccCcHHHcCCCCCCEEEEe
Confidence 334567899999999999999999999999999983 2 2 3343 4689999999999887764
No 52
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=94.40 E-value=0.2 Score=42.40 Aligned_cols=65 Identities=15% Similarity=0.321 Sum_probs=52.6
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEec
Q 003370 71 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVD 142 (825)
Q Consensus 71 ~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~~ 142 (825)
.....+.++..+||.+|++++.+..+++++..||| +.+ ..|. .+.||.++++..+..|.+-++..
T Consensus 10 g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~-~~g-----~~L~-d~~~L~~~~i~~~~~i~l~~~~~ 74 (76)
T cd01803 10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLSDYNIQKESTLHLVLRLR 74 (76)
T ss_pred CCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEE-ECC-----EECC-CCCcHHHcCCCCCCEEEEEEEcc
Confidence 34456889999999999999999999999999999 432 3454 46799999999998887776643
No 53
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=94.22 E-value=0.28 Score=41.65 Aligned_cols=66 Identities=8% Similarity=0.265 Sum_probs=52.7
Q ss_pred cCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEe
Q 003370 69 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 141 (825)
Q Consensus 69 ~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~ 141 (825)
......++.++..+||.+|++++....+++.++.||+ +. + ..|. .+.||.++++.++..+.+-.+.
T Consensus 6 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~-~~----G-~~L~-D~~tL~~~~i~~~~tl~l~~~l 71 (74)
T cd01810 6 DKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLS-FE----G-RPME-DEHPLGEYGLKPGCTVFMNLRL 71 (74)
T ss_pred CCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEE-EC----C-EECC-CCCCHHHcCCCCCCEEEEEEEc
Confidence 3444557888999999999999999999999999998 22 2 4454 4589999999999888776654
No 54
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=94.13 E-value=0.36 Score=42.42 Aligned_cols=63 Identities=16% Similarity=0.332 Sum_probs=50.6
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEE
Q 003370 71 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 140 (825)
Q Consensus 71 ~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~ 140 (825)
.....+.+++.+|+..|+++.|+..+++.++.|++. .+ ..|. .+.|++++++.++..|-+=++
T Consensus 21 g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f-~G-----~~L~-~~~T~~~l~m~d~d~I~v~l~ 83 (87)
T cd01763 21 GNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLF-DG-----QRIR-DNQTPDDLGMEDGDEIEVMLE 83 (87)
T ss_pred CCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEE-CC-----eECC-CCCCHHHcCCCCCCEEEEEEe
Confidence 445678999999999999999999999999999993 32 3443 567999999999886654443
No 55
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=93.90 E-value=0.25 Score=42.24 Aligned_cols=58 Identities=17% Similarity=0.159 Sum_probs=46.3
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhcc-CCCeEEE
Q 003370 73 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQ-MDQDILL 137 (825)
Q Consensus 73 ~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~-~~~~~~~ 137 (825)
..++.+...+||.+|++++....+++++.-|| +.+ ..|.+.++||.++++. .|..+.|
T Consensus 14 t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL--~~G-----~~L~dD~~tL~~ygi~~~g~~~~l 72 (75)
T cd01799 14 TIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW--VIG-----QRLARDQETLYSHGIRTNGDSAFL 72 (75)
T ss_pred eEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE--EcC-----CeeCCCcCCHHHcCCCCCCCEEEE
Confidence 45688899999999999999999999999999 333 2355567899999998 4455554
No 56
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=93.51 E-value=0.31 Score=41.04 Aligned_cols=60 Identities=17% Similarity=0.256 Sum_probs=48.1
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEE
Q 003370 70 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDIL 136 (825)
Q Consensus 70 ~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~ 136 (825)
......+.++..+||.+|+.++....++++++.||| |.+ ..|. .+.+|.++++..+..|-
T Consensus 7 ~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li-~~G-----~~L~-D~~~l~~~~i~~~~tv~ 66 (70)
T cd01794 7 TGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWF-FSG-----KLLT-DKTRLQETKIQKDYVVQ 66 (70)
T ss_pred CCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEE-ECC-----eECC-CCCCHHHcCCCCCCEEE
Confidence 344567889999999999999999999999999998 332 4554 56899999998776543
No 57
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=93.46 E-value=0.32 Score=40.75 Aligned_cols=60 Identities=17% Similarity=0.279 Sum_probs=48.5
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEE
Q 003370 70 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDIL 136 (825)
Q Consensus 70 ~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~ 136 (825)
......+.+...+||.+|++.+....+++.++.||+ |.+ ..|. .+.||.++++..+..+-
T Consensus 7 ~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li-~~G-----~~L~-d~~~l~~~~i~~~stl~ 66 (70)
T cd01798 7 TGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVI-FAG-----KELR-NTTTIQECDLGQQSILH 66 (70)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEE-ECC-----eECC-CCCcHHHcCCCCCCEEE
Confidence 344567788999999999999999999999999998 332 3454 56899999999887654
No 58
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=93.05 E-value=0.43 Score=40.05 Aligned_cols=57 Identities=21% Similarity=0.187 Sum_probs=46.0
Q ss_pred eEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEE
Q 003370 74 TVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 137 (825)
Q Consensus 74 ~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~ 137 (825)
..+.+...+||.+|++.+.+..+++.++.||+. . + ..|. .++||.++|+.++..|.+
T Consensus 12 ~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~-~----G-k~L~-d~~tL~~~~i~~~stl~l 68 (71)
T cd01808 12 EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIF-A----G-KILK-DTDTLTQHNIKDGLTVHL 68 (71)
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEE-C----C-eEcC-CCCcHHHcCCCCCCEEEE
Confidence 478889999999999999999999988999973 2 2 3454 457999999998876644
No 59
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=93.00 E-value=0.48 Score=43.12 Aligned_cols=65 Identities=17% Similarity=0.238 Sum_probs=52.7
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEec
Q 003370 71 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVD 142 (825)
Q Consensus 71 ~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~~ 142 (825)
....++.++..+||.+|++++....++++++.||| |.+ ..|. .+.+|.++++..+..|-+-++..
T Consensus 37 G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi-~~G-----k~L~-D~~tL~dy~I~~~stL~l~~~l~ 101 (103)
T cd01802 37 GTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLI-WNN-----MELE-DEYCLNDYNISEGCTLKLVLAMR 101 (103)
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEE-ECC-----EECC-CCCcHHHcCCCCCCEEEEEEecC
Confidence 34567889999999999999999999999999998 332 3454 55899999999998877766643
No 60
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=92.98 E-value=0.33 Score=43.08 Aligned_cols=63 Identities=13% Similarity=0.055 Sum_probs=53.9
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEe
Q 003370 73 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 141 (825)
Q Consensus 73 ~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~ 141 (825)
...+.++-.+||.+|+..+...|++++.+=+||- . + ..|.+..+||.++|+.++..|.+=+.+
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~-d----G-~~L~DDsrTLssyGv~sgSvl~Llide 78 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSI-D----G-KILSDDCATLGTLGVIPESVILLKADE 78 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeee-c----C-ceeccCCccHHhcCCCCCCEEEEEecC
Confidence 3467799999999999999999999999999994 2 2 367789999999999999988877653
No 61
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=92.94 E-value=0.28 Score=40.72 Aligned_cols=60 Identities=22% Similarity=0.283 Sum_probs=49.5
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEE
Q 003370 73 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEV 139 (825)
Q Consensus 73 ~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~ 139 (825)
...+.+...+||.+|++.+.+..++++++.||-. . + ..| +.+.||.++++..+..|.+=+
T Consensus 7 ~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~-~----G-~~L-~d~~tL~~~~i~~~~~I~l~~ 66 (69)
T PF00240_consen 7 TFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIY-N----G-KEL-DDDKTLSDYGIKDGSTIHLVI 66 (69)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEE-T----T-EEE-STTSBTGGGTTSTTEEEEEEE
T ss_pred EEEEEECCCCCHHHhhhhcccccccccccceeee-e----e-ecc-cCcCcHHHcCCCCCCEEEEEE
Confidence 4578899999999999999999999999998873 2 2 455 678899999999988666543
No 62
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=92.72 E-value=0.68 Score=39.23 Aligned_cols=62 Identities=16% Similarity=0.271 Sum_probs=49.4
Q ss_pred CceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEE
Q 003370 72 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 140 (825)
Q Consensus 72 ~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~ 140 (825)
...++.+...+||.+|+.++....++++++.||| |.+ ..|. .+.||.++++..+..|-+=++
T Consensus 9 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li-~~G-----k~L~-D~~tL~~~~i~~~~tl~l~~~ 70 (74)
T cd01793 9 NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLL-LAG-----VPLE-DDATLGQCGVEELCTLEVAGR 70 (74)
T ss_pred CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEE-ECC-----eECC-CCCCHHHcCCCCCCEEEEEEe
Confidence 3457788999999999999999999999999999 332 3454 558999999998876654444
No 63
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=92.63 E-value=0.48 Score=39.54 Aligned_cols=61 Identities=23% Similarity=0.309 Sum_probs=49.1
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEE
Q 003370 70 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 137 (825)
Q Consensus 70 ~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~ 137 (825)
+.....+.+...+|+.+|++++.+..+++++..||+. . + .+|. .+.+|.++++.++..+.+
T Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~-~----g-~~L~-d~~~L~~~~i~~~~~l~l 69 (72)
T cd01809 9 DSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIY-S----G-RVLK-DDETLSEYKVEDGHTIHL 69 (72)
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE-C----C-EECC-CcCcHHHCCCCCCCEEEE
Confidence 3345678889999999999999999999999999983 2 2 4554 468999999999876643
No 64
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=92.42 E-value=0.64 Score=39.95 Aligned_cols=58 Identities=12% Similarity=0.204 Sum_probs=46.2
Q ss_pred CceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEE
Q 003370 72 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 137 (825)
Q Consensus 72 ~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~ 137 (825)
....+.++..+||.+|++.+.+..+++++..||- +. . ..|.+ + +|.++|+.++..|.+
T Consensus 12 ~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~--~~---G-k~L~d-~-~L~~~gi~~~~~i~l 69 (78)
T cd01804 12 TRFDLSVPPDETVEGLKKRISQRLKVPKERLALL--HR---E-TRLSS-G-KLQDLGLGDGSKLTL 69 (78)
T ss_pred CEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEE--EC---C-cCCCC-C-cHHHcCCCCCCEEEE
Confidence 4467889999999999999999999998887775 32 2 45654 4 899999999886654
No 65
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=92.22 E-value=0.35 Score=41.85 Aligned_cols=67 Identities=22% Similarity=0.248 Sum_probs=52.2
Q ss_pred ccCCCceEEEeCccccHHHHHHHHHHHhCCCCcc-eEEEEeccCcccccCccCc-cCCHHHHhccCCCeEEEE
Q 003370 68 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEK-ARIWDYFNKQRSTSPLDVS-DQTLDDAMLQMDQDILLE 138 (825)
Q Consensus 68 ~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~-~rlw~~~~~~~~~~~l~~~-~~tl~~~~~~~~~~~~~E 138 (825)
.++.......|...+|+++|+..+......+... ++|..-+.. ..+... ++||.|+|+..+..|++|
T Consensus 13 lpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr----~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 13 LPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPR----RELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp ETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSST----EECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred CCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCC----cCCCccccccHHHhcCCCCeEEEEE
Confidence 4777788899999999999999999877776654 888754432 223233 599999999999999887
No 66
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=92.15 E-value=0.97 Score=38.98 Aligned_cols=67 Identities=21% Similarity=0.212 Sum_probs=50.6
Q ss_pred ccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCcc--CccCCHHHHhccCCCeEEEE
Q 003370 68 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLD--VSDQTLDDAMLQMDQDILLE 138 (825)
Q Consensus 68 ~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~--~~~~tl~~~~~~~~~~~~~E 138 (825)
.++.......|+..+|+++|.+.+....+.....++|---+.. ..+. +.++||.++|+..+..|++|
T Consensus 11 lPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Pr----k~l~~~d~~~tL~e~gL~p~~~l~v~ 79 (80)
T smart00166 11 LPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPR----RTFTKDDYSKTLLELALLPSSTLVLE 79 (80)
T ss_pred cCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCC----cCCccccccCCHHHCCCCCceEEEEe
Confidence 5777888899999999999999997666655556766543321 2333 33689999999998888887
No 67
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=91.78 E-value=0.82 Score=39.44 Aligned_cols=64 Identities=17% Similarity=0.210 Sum_probs=49.0
Q ss_pred CceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEE
Q 003370 72 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 140 (825)
Q Consensus 72 ~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~ 140 (825)
....+.+...+||.+|++.+.+..+++.++.||-..+ .+ ..|. .+.||.++|+..+..|.+=++
T Consensus 13 ~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~---~G-~~L~-D~~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 13 NEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLD---SR-EVLQ-DGVPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred CEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEecc---CC-CCCC-CCCCHHHcCCCCCCEEEEEEE
Confidence 4456678899999999999999999999999983222 22 3554 457999999999887766544
No 68
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=91.53 E-value=1.1 Score=38.04 Aligned_cols=62 Identities=18% Similarity=0.247 Sum_probs=50.3
Q ss_pred CceEEEeCccccHHHHHHHHHHHhCC--CCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEE
Q 003370 72 SQTVIRLSKKASTRQLYEKVCKLRGI--EQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 140 (825)
Q Consensus 72 ~~~~~~~Sk~~ti~~L~~~v~~~~~~--~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~ 140 (825)
....+.++..+||.+|++.+....++ ++++.||+. . + ..|. .+.+|.++++..+..|++=++
T Consensus 11 ~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~-~----G-~~L~-d~~~L~~~~i~~~~~i~~~~~ 74 (77)
T cd01805 11 QTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIY-S----G-KILK-DDTTLEEYKIDEKDFVVVMVS 74 (77)
T ss_pred CEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEE-C----C-EEcc-CCCCHHHcCCCCCCEEEEEEe
Confidence 44567889999999999999999999 888888883 2 3 4554 567999999999988877654
No 69
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=91.51 E-value=0.86 Score=39.21 Aligned_cols=61 Identities=26% Similarity=0.336 Sum_probs=49.6
Q ss_pred EE-EeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEec
Q 003370 75 VI-RLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVD 142 (825)
Q Consensus 75 ~~-~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~~ 142 (825)
.+ .+...+||.+|++++.+..++++++-|||- . + ..|. .+.||.++++..+..|.+=++.+
T Consensus 15 ~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~-~----G-k~L~-D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 15 TVDSLSRLTKVEELREKIQELFNVEPECQRLFY-R----G-KQME-DGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred EeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEe-C----C-EECC-CCCCHHHcCCCCCCEEEEEEecC
Confidence 44 367789999999999999999999999993 2 2 4554 56899999999999888877643
No 70
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=91.23 E-value=1.1 Score=38.01 Aligned_cols=60 Identities=12% Similarity=0.151 Sum_probs=48.4
Q ss_pred CceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEE
Q 003370 72 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 138 (825)
Q Consensus 72 ~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E 138 (825)
....+.+...+||.+|++++.+.++++++..||- +. + ..|. .++||.++|+.++..|.+-
T Consensus 12 k~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi-~~----G-k~L~-D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 12 KKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLK-KW----Y-TIFK-DHISLGDYEIHDGMNLELY 71 (73)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEE-eC----C-cCCC-CCCCHHHcCCCCCCEEEEE
Confidence 4456688999999999999999999999999986 22 3 4565 4579999999998877654
No 71
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=90.83 E-value=0.71 Score=38.73 Aligned_cols=58 Identities=21% Similarity=0.366 Sum_probs=46.2
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCC-cceEEEEeccCcccccCccCccCCHHHHhccCCCeE
Q 003370 71 NSQTVIRLSKKASTRQLYEKVCKLRGIEQ-EKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI 135 (825)
Q Consensus 71 ~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~-~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~ 135 (825)
.....+.+.+..+++.|++..|+..+++. +++|++ |.+ ..| +.++|++++++.++..|
T Consensus 10 ~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~-fdG-----~~L-~~~~T~~~~~ied~d~I 68 (72)
T PF11976_consen 10 GKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLI-FDG-----KRL-DPNDTPEDLGIEDGDTI 68 (72)
T ss_dssp SEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEE-ETT-----EEE--TTSCHHHHT-STTEEE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEE-ECC-----EEc-CCCCCHHHCCCCCCCEE
Confidence 34567889999999999999999999999 899998 343 344 46789999999987653
No 72
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=90.83 E-value=1 Score=38.47 Aligned_cols=61 Identities=16% Similarity=0.129 Sum_probs=50.6
Q ss_pred eEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEe
Q 003370 74 TVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 141 (825)
Q Consensus 74 ~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~ 141 (825)
..+.+...+||.+|++++-...+++++..||+ |.+ ..|. .++||.++++.++..|.+=++.
T Consensus 10 ~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~-~~G-----~~L~-d~~tL~~~~i~~g~~l~v~~~~ 70 (76)
T cd01800 10 LNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQ-YEG-----IFIK-DSNSLAYYNLANGTIIHLQLKE 70 (76)
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCCHHHEEEE-ECC-----EEcC-CCCcHHHcCCCCCCEEEEEEec
Confidence 46788999999999999999999999999998 333 3454 4589999999999988776664
No 73
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=90.20 E-value=0.48 Score=41.00 Aligned_cols=64 Identities=16% Similarity=0.198 Sum_probs=37.3
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEE
Q 003370 73 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 138 (825)
Q Consensus 73 ~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E 138 (825)
...+.++..+|+.+|++++.+.++++.....|.. +.+....+..+.++||.++||..|..|.|.
T Consensus 15 ~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~--~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 15 MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSK--DRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHS---TTT---BS--SGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEe--cCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 3467889999999999999999999988776653 233332344567899999999999877653
No 74
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=90.19 E-value=1.8 Score=37.99 Aligned_cols=69 Identities=19% Similarity=0.137 Sum_probs=48.2
Q ss_pred ccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCc----cCccCCHHHHhccCCCeEEEE
Q 003370 68 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPL----DVSDQTLDDAMLQMDQDILLE 138 (825)
Q Consensus 68 ~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l----~~~~~tl~~~~~~~~~~~~~E 138 (825)
.++.+....+|...+|+++|...+-. ....++.++|---+..... .-+ .+.+.||+|+||.....|++|
T Consensus 11 lp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~-~~~~~~~~~~~~TL~eaGL~~s~~L~V~ 83 (85)
T cd01774 11 LPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVL-PCLPSEGDPPPPTLLEAGLSNSEVLFVQ 83 (85)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccc-cccccccCcCCCCHHHcCCCCccEEEEe
Confidence 47888888999999999999999943 3444556666532222222 111 246789999999988888887
No 75
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=90.18 E-value=1 Score=36.36 Aligned_cols=54 Identities=26% Similarity=0.343 Sum_probs=43.2
Q ss_pred CceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCC
Q 003370 72 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMD 132 (825)
Q Consensus 72 ~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~ 132 (825)
....+.++..+||.+|+..+.+.++++++..||.- .+ ..|.+ +.||.++++.++
T Consensus 10 ~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~-~g-----~~L~d-~~tL~~~~i~~~ 63 (64)
T smart00213 10 GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIY-KG-----KVLED-DRTLADYNIQDG 63 (64)
T ss_pred ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE-CC-----EECCC-CCCHHHcCCcCC
Confidence 34568899999999999999999999999888873 22 34543 589999998764
No 76
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=90.07 E-value=2 Score=36.71 Aligned_cols=66 Identities=15% Similarity=0.082 Sum_probs=47.3
Q ss_pred ccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCcc-CccCCHHHHhccCCCeEEEE
Q 003370 68 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLD-VSDQTLDDAMLQMDQDILLE 138 (825)
Q Consensus 68 ~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~-~~~~tl~~~~~~~~~~~~~E 138 (825)
.++.......|+..+|+++|.+.+.....- ...++|+--+... .+-+ +.++||+++||.. ..++++
T Consensus 9 lpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~---~~~~~~~~~TL~e~gL~~-s~~~~~ 75 (77)
T cd01767 9 LPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRR---VLTDLDYELTLQEAGLVN-EVVFQR 75 (77)
T ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCc---cCCCCCccCcHHHcCCcc-ceEEEE
Confidence 577777888999999999999999865433 4568888533322 2222 4789999999994 455554
No 77
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=89.89 E-value=1.7 Score=37.59 Aligned_cols=69 Identities=13% Similarity=0.116 Sum_probs=50.4
Q ss_pred ccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEE
Q 003370 68 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEV 139 (825)
Q Consensus 68 ~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~ 139 (825)
+++.+....+|...+++++|+..|... +.+.+..+|---+..... . -.+.+.||+|+||.....|++|.
T Consensus 11 lP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~-~-~~d~~~TL~e~gL~p~~~L~Vee 79 (80)
T cd01771 11 TPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDL-T-QLDPNFTLLELKLYPQETLILEE 79 (80)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCC-c-CCCCCCcHHHcCCCCCcEEEEEc
Confidence 577777888999999999999999753 555566666532322222 1 12456899999999988999985
No 78
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=89.05 E-value=1.7 Score=35.52 Aligned_cols=58 Identities=22% Similarity=0.284 Sum_probs=45.8
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEE
Q 003370 73 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 137 (825)
Q Consensus 73 ~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~ 137 (825)
...+.+...+|+.+|++++.+.++++++..+|+- .+ ..|. .+.+|.++++.++..|.+
T Consensus 9 ~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~-~g-----~~l~-d~~~l~~~~v~~~~~i~v 66 (69)
T cd01769 9 TFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIY-AG-----KILK-DDKTLSDYGIQDGSTLHL 66 (69)
T ss_pred EEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE-CC-----cCCC-CcCCHHHCCCCCCCEEEE
Confidence 3457788899999999999999999999888862 22 3453 567999999998876654
No 79
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=87.88 E-value=3.7 Score=35.66 Aligned_cols=71 Identities=21% Similarity=0.261 Sum_probs=52.3
Q ss_pred eccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEE
Q 003370 67 DSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 140 (825)
Q Consensus 67 ~~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~ 140 (825)
..++.+....+|...+++.+|+..+-. .+.+.+.+.|---+..... .- .+.+.||+++||.....|+||-+
T Consensus 11 RlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~-~~-~d~~~TL~e~GL~P~~~LfVq~r 81 (82)
T cd01773 11 RYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKL-SH-LDYDITLQEAGLCPQETVFVQER 81 (82)
T ss_pred ECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCccc-CC-cccCCCHHHcCCCCCcEEEEecC
Confidence 357777788899999999999998876 5667777777643333333 22 34557999999999999998854
No 80
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=85.62 E-value=3.5 Score=35.01 Aligned_cols=62 Identities=15% Similarity=0.300 Sum_probs=47.5
Q ss_pred CceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEE
Q 003370 72 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 137 (825)
Q Consensus 72 ~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~ 137 (825)
....+.+...+|+.+|++++.+..++++++-+|--. .-.. .++. .+.+|.++++..++.|++
T Consensus 10 ~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~--~~~G-k~l~-D~~~L~~~~i~~g~~i~l 71 (74)
T cd01813 10 QEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGL--KVKG-KPAE-DDVKISALKLKPNTKIMM 71 (74)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEee--cccC-CcCC-CCcCHHHcCCCCCCEEEE
Confidence 334678888999999999999999999998877631 0113 3554 578999999999887664
No 81
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=84.62 E-value=0.52 Score=46.53 Aligned_cols=26 Identities=31% Similarity=0.485 Sum_probs=16.3
Q ss_pred CCCcccceecCCCchhHHHHHHHHhC
Q 003370 213 EKGGLAGLQNLGNTCFMNSALQCLVH 238 (825)
Q Consensus 213 ~~~g~~GL~NlGNTCYmNSvLQ~L~~ 238 (825)
....++|+.|.+|||++||++|.+-.
T Consensus 29 ~~~eft~~PN~~dnCWlNaL~QL~~~ 54 (193)
T PF05408_consen 29 GKMEFTGLPNNHDNCWLNALLQLFRY 54 (193)
T ss_dssp ---EEE----SSSTHHHHHHHHHHHH
T ss_pred cceEEecCCCCCCChHHHHHHHHHHH
Confidence 34557799999999999999997643
No 82
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=83.15 E-value=5.5 Score=34.30 Aligned_cols=66 Identities=9% Similarity=0.019 Sum_probs=46.7
Q ss_pred ccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCcc--CccCCHHHHhccCCCeEEEE
Q 003370 68 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLD--VSDQTLDDAMLQMDQDILLE 138 (825)
Q Consensus 68 ~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~--~~~~tl~~~~~~~~~~~~~E 138 (825)
+++.......|+..+|+.+|.+.+.....-. ..+.|---+.. ..+. +.++||+++||.....|+++
T Consensus 11 lp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPr----k~~~~~d~~~TL~elgL~Psa~L~v~ 78 (79)
T cd01772 11 LLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPR----KVFTEDDMEKPLQELGLVPSAVLIVT 78 (79)
T ss_pred CCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCC----eECCcccccCCHHHCCCCCceEEEEe
Confidence 4777778889999999999999998654322 44555422211 2232 45789999999998888876
No 83
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=81.65 E-value=8.9 Score=33.05 Aligned_cols=60 Identities=15% Similarity=0.112 Sum_probs=43.0
Q ss_pred ccCCCceEEEeCccccHHHHHHHHHHHhCCC-CcceEEEEeccCcccccCccCccCCHHHHhccC
Q 003370 68 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIE-QEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQM 131 (825)
Q Consensus 68 ~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~-~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~ 131 (825)
+++.+.....|...+||++|++.+.....-. ...+.|.--+.. ..|.+.++||+|+||..
T Consensus 11 lpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~----k~l~~~~~Tl~eagL~~ 71 (79)
T cd01770 11 LADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPV----KELSDESLTLKEANLLN 71 (79)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCC----cccCCCCCcHHHCCCcC
Confidence 5777788889999999999999999765432 235666532221 23345589999999985
No 84
>PF06337 DUSP: DUSP domain; InterPro: IPR006615 Deubiquitinating enzymes (DUB) form a large family of cysteine protease that can deconjugate ubiquitin or ubiquitin-like proteins (see PDOC00271 from PROSITEDOC) from ubiquitin-conjugated proteins. All DUBs contain a catalytic domain surrounded by one or more subdomains, some of which contribute to target recognition. The ~120-residue DUSP (domain present in ubiquitin-specific proteases) domain is one of these specific subdomains. Single or tandem DUSP domains are located both N- and C-terminal to the ubiquitin carboxyl-terminal hydrolase catalytic core domain (see PDOC00750 from PROSITEDOC) []. The DUSP domain displays a tripod-like AB3 fold with a three-helix bundle and a three-stranded anti-parallel beta-sheet resembling the legs and seat of the tripod. Conserved residues are predominantly involved in hydrophobic packing interactions within the three alpha-helices. The most conserved DUSP residues, forming the PGPI motif, are flanked by two long loops that vary both in length and sequence. The PGPI motif packs against the three-helix bundle and is highly ordered []. The function of the DUSP domain is unknown but it may play a role in protein/protein interaction or substrate recognition. This domain is associated with ubiquitin carboxyl-terminal hydrolase family 2 (IPR001394 from INTERPRO, MEROPS peptidase family C19). They are a family 100 to 200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast; others include: Mammalian ubiquitin carboxyl-terminal hydrolase 4 (USP4), Mammalian ubiquitin carboxyl-terminal hydrolase 11 (USP11), Mammalian ubiquitin carboxyl-terminal hydrolase 15 (USP15), Mammalian ubiquitin carboxyl-terminal hydrolase 20 (USP20), Mammalian ubiquitin carboxyl-terminal hydrolase 32 (USP32), Vertebrate ubiquitin carboxyl-terminal hydrolase 33 (USP33), Vertebrate ubiquitin carboxyl-terminal hydrolase 48 (USP48). ; GO: 0004221 ubiquitin thiolesterase activity; PDB: 4A3O_B 3PPA_A 3LMN_A 1W6V_A 3T9L_A 4A3P_A 3PV1_A 3JYU_B.
Probab=80.05 E-value=0.61 Score=41.81 Aligned_cols=15 Identities=40% Similarity=0.961 Sum_probs=7.3
Q ss_pred cccccCCCeeeeEee
Q 003370 33 SFFVGGPALPRKMIS 47 (825)
Q Consensus 33 ~~y~ggp~I~R~Vi~ 47 (825)
.||||||+|+|.||.
T Consensus 85 ~~Ygggp~I~R~vi~ 99 (99)
T PF06337_consen 85 SWYGGGPEIKRQVIN 99 (99)
T ss_dssp HHH-T----EEEEE-
T ss_pred HHcCCCCcEEEEeeC
Confidence 466788999999983
No 85
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.32 E-value=6.2 Score=44.45 Aligned_cols=64 Identities=16% Similarity=0.262 Sum_probs=51.9
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhC---CCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEe
Q 003370 71 NSQTVIRLSKKASTRQLYEKVCKLRG---IEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 141 (825)
Q Consensus 71 ~~~~~~~~Sk~~ti~~L~~~v~~~~~---~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~ 141 (825)
.....+.+...+||.+|++++....+ ++.++.||+ |. + .+|. .++||.++++..+..|++=+..
T Consensus 10 g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLI-y~----G-kiL~-Dd~tL~dy~I~e~~~Ivvmv~k 76 (378)
T TIGR00601 10 QQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLI-YS----G-KILS-DDKTVREYKIKEKDFVVVMVSK 76 (378)
T ss_pred CCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEE-EC----C-EECC-CCCcHHHcCCCCCCEEEEEecc
Confidence 34467889999999999999999988 888999998 33 3 4565 5579999999998888876664
No 86
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=77.24 E-value=11 Score=31.83 Aligned_cols=66 Identities=23% Similarity=0.347 Sum_probs=48.8
Q ss_pred ccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEE
Q 003370 68 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEV 139 (825)
Q Consensus 68 ~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~ 139 (825)
+++.+...+.+....|+.|+++++|+.+++.++...|......... .+. --+|+....+++|.+|.
T Consensus 6 LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~~~~~--~~~----~~~d~~~L~~~El~Ve~ 71 (72)
T cd01760 6 LPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGLDEKK--PLD----LDTDSSSLAGEELEVEP 71 (72)
T ss_pred CcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecCCCcC--CcC----chhhhhhhcCCEEEEEe
Confidence 4888888999999999999999999999999998878765433211 221 22345556677888875
No 87
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=76.40 E-value=2.3 Score=42.15 Aligned_cols=49 Identities=22% Similarity=0.340 Sum_probs=33.5
Q ss_pred Eeec--CCCCCeEEEEEeeCCCCcEEEeCCCceeecCcCcccCCCeEEEEEEEecCCc
Q 003370 757 NHYG--GLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRVKSKT 812 (825)
Q Consensus 757 ~H~G--~l~gGHYtAy~k~~~~~~Wy~fnDs~V~~v~~~~v~s~~AYvLFY~R~~~~~ 812 (825)
.|.| --|.||-++|++ ..+.||.+||..+.+-+++- +=+|.|..-+.+.
T Consensus 129 f~agi~~~g~~Havfa~~--ts~gWy~iDDe~~y~~tPdp-----~~VLvfvp~D~Ep 179 (193)
T PF05408_consen 129 FHAGIFLKGQEHAVFACV--TSDGWYAIDDEDFYPWTPDP-----SDVLVFVPYDQEP 179 (193)
T ss_dssp EEEEEEEESTTEEEEEEE--ETTCEEEEETTEEEE----G-----GGEEEEEESSSS-
T ss_pred hhhHheecCCcceEEEEE--eeCcEEEecCCeeeeCCCCh-----hheEEEcccCccc
Confidence 3555 356899999998 69999999999999988643 2346677666543
No 88
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=75.25 E-value=12 Score=31.61 Aligned_cols=64 Identities=25% Similarity=0.353 Sum_probs=43.2
Q ss_pred ccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEE
Q 003370 68 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEV 139 (825)
Q Consensus 68 ~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~ 139 (825)
+|+.+...+.+....|++|.+..+|+..++.++.+.++... .. ..+. .++ ++..-.++++.+|.
T Consensus 7 LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~---~~-k~l~-~~~---d~~~L~~~El~ve~ 70 (71)
T PF02196_consen 7 LPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG---EK-KPLD-WDQ---DSSSLPGEELRVEK 70 (71)
T ss_dssp ETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE---EE-EEE--TTS---BGGGGTTSEEEEEE
T ss_pred CCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC---CC-cccc-CCC---ceeeecCCEEEEEe
Confidence 48888888999999999999999999999999988777433 11 2221 221 12233568888885
No 89
>PLN02560 enoyl-CoA reductase
Probab=74.74 E-value=11 Score=41.22 Aligned_cols=61 Identities=15% Similarity=0.158 Sum_probs=45.4
Q ss_pred EEEeCccccHHHHHHHHHHHhCC-CCcceEEEEeccC--cccccCccCccCCHHHHhccCCCeEEE
Q 003370 75 VIRLSKKASTRQLYEKVCKLRGI-EQEKARIWDYFNK--QRSTSPLDVSDQTLDDAMLQMDQDILL 137 (825)
Q Consensus 75 ~~~~Sk~~ti~~L~~~v~~~~~~-~~~~~rlw~~~~~--~~~~~~l~~~~~tl~~~~~~~~~~~~~ 137 (825)
++.++..+||+||++.+.+..++ +++..||+-.... ... ..| +.++||++.|+.++.+|.+
T Consensus 17 ~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g-~~L-~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 17 GLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRP-TVL-DDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred eEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCc-ccc-CCCCCHHhcCCCCCceEEE
Confidence 67789999999999999998876 7788999943212 222 234 3567999999988877554
No 90
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=72.35 E-value=21 Score=30.87 Aligned_cols=53 Identities=17% Similarity=0.279 Sum_probs=39.9
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHH
Q 003370 73 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDA 127 (825)
Q Consensus 73 ~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~ 127 (825)
-..+++...-+..+|.+++++.|+++++.+.|+ |..+.+. ++....+..+++|
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~Ls-Ykde~s~-~~v~l~d~dle~a 64 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLS-YKSEASG-EDVILSDTNMEDV 64 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEE-eccCCCC-CccCcChHHHHHH
Confidence 356788999999999999999999998899998 4544444 3333345667776
No 91
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=71.26 E-value=3.4 Score=33.63 Aligned_cols=37 Identities=16% Similarity=0.409 Sum_probs=29.2
Q ss_pred CCCCCCccccccceEEEEEEee--eCCCeEEEEEeeeEe
Q 003370 679 DDMWYCPQCKEHRQATKKLDLW--MLPDVLVFHLKRFSY 715 (825)
Q Consensus 679 ~d~w~C~~Ck~~~~A~Kk~~i~--~lP~iLiIhLKRF~~ 715 (825)
.++|.||+|+.+--..|.+..- .+.+++=|++++|-.
T Consensus 2 ~~~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~~ 40 (68)
T COG3478 2 KNAFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFIV 40 (68)
T ss_pred CccccCCCcCCcchhhceeeccCCCcceeEEecccEEEE
Confidence 3568899999887777766654 578899999999964
No 92
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=71.19 E-value=20 Score=30.34 Aligned_cols=65 Identities=23% Similarity=0.304 Sum_probs=48.6
Q ss_pred ccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEE
Q 003370 68 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 140 (825)
Q Consensus 68 ~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~ 140 (825)
+|+.+...+.+....||+|++.++|+.+++..+.+.++.. +.. . .+-.+ +|..+..++++.+|-+
T Consensus 6 LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~-g~~-k-~l~~~-----qD~~~L~~~El~vE~r 70 (73)
T cd01817 6 LPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLV-GGD-K-PLVLD-----QDSSVLAGQEVRLEKR 70 (73)
T ss_pred CCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEe-cCC-c-ccccC-----CccceeeccEEEEEEe
Confidence 5888888999999999999999999999999998888865 222 2 22222 2334456788888865
No 93
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=69.91 E-value=36 Score=29.66 Aligned_cols=64 Identities=14% Similarity=0.071 Sum_probs=41.5
Q ss_pred cceEEEecCCcChHHHHHHHHhhccCCcccceeEEE-eecceeeEeecCccccccc--ccCCCcEEE
Q 003370 418 MPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAE-VYNHQIFRFFENPAELISS--IKDDEHIVA 481 (825)
Q Consensus 418 ~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~e-~~~~~~~k~~~d~~~~~~~--i~~~d~i~~ 481 (825)
.....++++..++.+|+..|...+|+++..+-+... -.+......+.|....|.. +.++..|.+
T Consensus 14 ~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V 80 (87)
T PF14560_consen 14 RSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHV 80 (87)
T ss_dssp SEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEE
T ss_pred eeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEE
Confidence 456788999999999999999999998766544332 2344444555555555553 445544443
No 94
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=69.41 E-value=11 Score=43.13 Aligned_cols=62 Identities=19% Similarity=0.266 Sum_probs=50.0
Q ss_pred CceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCe--EEEEEE
Q 003370 72 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQD--ILLEVQ 140 (825)
Q Consensus 72 ~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~--~~~E~~ 140 (825)
+...+.+...+||.+|++.+.+.|..+.|..+|- |. + .+|+ ++.||...||++|-. +|+-.+
T Consensus 25 dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLI-fa----G-rILK-D~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 25 DKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLI-YA----G-RILK-DDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred cceeEecccchHHHHHHHHHHHhcCCChhHeeee-ec----C-cccc-ChhhHHHcCCCCCcEEEEEeccC
Confidence 3667889999999999999999999999998886 23 2 5776 677999999999874 444433
No 95
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=68.37 E-value=3 Score=52.10 Aligned_cols=120 Identities=18% Similarity=0.193 Sum_probs=88.6
Q ss_pred CCCHHHHHHhhcCCcccCCCCCCCCccccccceEEEEEEeeeCCCeEEEEEeeeEeecccccccceeeeccCcccccccc
Q 003370 660 AISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKY 739 (825)
Q Consensus 660 ~~sL~dCL~~f~~~E~L~~~d~w~C~~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~ 739 (825)
...+.+|+..|+..+.+..+...-|+.|.....-. ...-. .+++|+..|+........+....+.+++.++.+-.+
T Consensus 481 ~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~ 556 (842)
T KOG1870|consen 481 VEILFDCFNKIFAADELKLDSIYSDEELFDYELGV--LKVQG--SIYAIIVVRFRSRLPRSKGIRSHVSSKLFGLPLLVS 556 (842)
T ss_pred ceeccchhhhhhccCccccccccCCcceEEeeccc--ccccc--cceEEEEEeeccccccccCcccCCCccccCCcceee
Confidence 34678999999998876667777777776543321 11111 168888888876654555677889999988888777
Q ss_pred cccCCCCceEEEEEEEEEeecCCCCCeEEEEEeeCCCCcEEEeCCCceeecC
Q 003370 740 MKSKDGESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVS 791 (825)
Q Consensus 740 ~~~~~~~~~~YdL~AVv~H~G~l~gGHYtAy~k~~~~~~Wy~fnDs~V~~v~ 791 (825)
+... .....++|..+++|.++...||+ ..+.|+..++..+..+.
T Consensus 557 ~~~~-~~~t~~~l~~~~~~~~s~~~~~~-------~~~v~~~~~~~~~~~~~ 600 (842)
T KOG1870|consen 557 VLSG-AQSTEEDLLSVICHRTSRYSREP-------PLNVGYGVDDQSLKEVS 600 (842)
T ss_pred ccCC-CcccccchhhHHhhcccccCCcC-------ccccccCCCcccccccc
Confidence 6653 24577999999999998887777 67899999999988775
No 96
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=66.88 E-value=13 Score=31.73 Aligned_cols=51 Identities=20% Similarity=0.118 Sum_probs=39.2
Q ss_pred ccccHHHHHHHHHHHhC--CC-CcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEE
Q 003370 80 KKASTRQLYEKVCKLRG--IE-QEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 137 (825)
Q Consensus 80 k~~ti~~L~~~v~~~~~--~~-~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~ 137 (825)
..+||.+|++++...++ ++ +++.||- |.+ ..|. .++||.++++..+..|.+
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLI-y~G-----KiL~-D~~TL~dygI~~gstlhL 72 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLI-HCG-----RKLK-DDQTLDFYGIQSGSTIHI 72 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEE-eCC-----cCCC-CCCcHHHcCCCCCCEEEE
Confidence 46899999999999974 64 7788887 333 3454 568999999999876654
No 97
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=64.24 E-value=10 Score=32.55 Aligned_cols=71 Identities=23% Similarity=0.344 Sum_probs=44.8
Q ss_pred EEeeccCC-CceEEEeCccccHHHHHHHHHHHhCCCCcc---eEEEEeccCcccccCccCccCCHHHHhccCCCeEEE
Q 003370 64 KLIDSRDN-SQTVIRLSKKASTRQLYEKVCKLRGIEQEK---ARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 137 (825)
Q Consensus 64 ~l~~~~~~-~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~---~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~ 137 (825)
+|...... ....+.+.-.-++++|+..+.+.++.+..+ .+-|.+. ..+. ..| +.++||.++++.+|..+.|
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~-~~~g-~~L-~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLA-RAGG-RPL-DPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG--GGT-EEE-ETTSBCGGGT--TT-EEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEE-ecCC-ccc-CCcCcHhHcCCCCCCEEEe
Confidence 33343443 567888899999999999999999986543 3478877 3455 455 5889999999999988765
No 98
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=63.57 E-value=21 Score=30.43 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=39.4
Q ss_pred CccccHHHHHHHHHHHhC-CCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEE
Q 003370 79 SKKASTRQLYEKVCKLRG-IEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 137 (825)
Q Consensus 79 Sk~~ti~~L~~~v~~~~~-~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~ 137 (825)
+...||.+|++.+.+..+ ++++..||+.-+ ++ ..|. .++||.+.|+..+..|.+
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~---~g-~~L~-d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEP---KG-KSLK-DDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCC---CC-cccC-CcccHhhcCCCCCCEEEE
Confidence 456799999999988876 467888888422 34 3443 456899999988776654
No 99
>smart00455 RBD Raf-like Ras-binding domain.
Probab=60.25 E-value=37 Score=28.53 Aligned_cols=64 Identities=23% Similarity=0.322 Sum_probs=46.0
Q ss_pred ccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEE
Q 003370 68 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEV 139 (825)
Q Consensus 68 ~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~ 139 (825)
+++.+...+.+-...|+.|+++.+|+.+++.++.+.+... +.+ ..|+ .+ +++....++++++|.
T Consensus 6 LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~-g~~---k~ld-l~---~~~~~l~~~el~ve~ 69 (70)
T smart00455 6 LPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLR-GEK---KPLD-LN---QPISSLDGQELVVEE 69 (70)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEc-CCC---ccee-cC---CccccccCceEEEEe
Confidence 4778888899999999999999999999999988877752 221 2222 11 122333568888885
No 100
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=58.56 E-value=24 Score=38.79 Aligned_cols=80 Identities=16% Similarity=0.167 Sum_probs=42.0
Q ss_pred CCcccceecCCCchhHHHHHHHHhCChH-HHHHHHhcCccccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHH
Q 003370 214 KGGLAGLQNLGNTCFMNSALQCLVHTPD-LAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKG 292 (825)
Q Consensus 214 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~-f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~ 292 (825)
..|..=|.=.-|.||+||++=.|=++.. |+.- ++.++..++..+ .|..|..
T Consensus 99 ~~g~~~Lkq~dNNCwVna~~~~LQ~~~~~f~~~-----------------------~l~~aw~~f~~G-----~~~~fVa 150 (320)
T PF08715_consen 99 VNGFRVLKQSDNNCWVNAACLQLQALKIKFKSP-----------------------GLDEAWNEFKAG-----DPAPFVA 150 (320)
T ss_dssp ETTEEEE---TTTHHHHHHHHHHTTST--BSSH-----------------------HHHHHHHHHHTT-------HHHHH
T ss_pred ECCEEEEEecCCCcHHHHHHHHHHhcCCccCCH-----------------------HHHHHHHHHhCC-----ChHHHHH
Confidence 4577777778999999999877665532 2211 112222222222 3566655
Q ss_pred HHhhhCCCCCCCCCCCHHHHHHHHHHHHHH
Q 003370 293 KLARFAPQFSGYNQHDSQELLAFLLDGLHE 322 (825)
Q Consensus 293 ~l~~~~~~F~~~~QqDA~Efl~~LLd~L~e 322 (825)
.+-.. ....-++--||+++|..||+.++.
T Consensus 151 ~~Ya~-~~~~~G~~gDa~~~L~~ll~~~~~ 179 (320)
T PF08715_consen 151 WCYAS-TNAKKGDPGDAEYVLSKLLKDADL 179 (320)
T ss_dssp HHHHH-TT--TTS---HHHHHHHHHTTB-T
T ss_pred HHHHH-cCCCCCCCcCHHHHHHHHHHhccc
Confidence 55442 346678899999999999876653
No 101
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=56.22 E-value=24 Score=36.52 Aligned_cols=62 Identities=21% Similarity=0.337 Sum_probs=36.6
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCc---ceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEE
Q 003370 73 QTVIRLSKKASTRQLYEKVCKLRGIEQE---KARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 138 (825)
Q Consensus 73 ~~~~~~Sk~~ti~~L~~~v~~~~~~~~~---~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E 138 (825)
...+.+.|..||+||++.+.+..+++.+ ++|||..++..-. ..+. .+.++.+. .+...+.+|
T Consensus 35 ~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~-~~~~-~d~~i~~l--~~~~~~r~E 99 (213)
T PF14533_consen 35 EYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIY-KILS-EDEPISSL--NDYITLRIE 99 (213)
T ss_dssp EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEE-EEE--TTSBGGGS----TTEEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEE-eecC-CCCchhhc--cCcceeeee
Confidence 3467889999999999999999998754 7999998766444 4443 55566555 222246666
No 102
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=55.73 E-value=19 Score=29.85 Aligned_cols=60 Identities=13% Similarity=0.246 Sum_probs=33.4
Q ss_pred cCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeE
Q 003370 69 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI 135 (825)
Q Consensus 69 ~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~ 135 (825)
++.....+.++...++.++++.+|+.|++++++..|-. .+ ..+ +.+...--+||-.+..+
T Consensus 4 ~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h---~~---k~l-dlslp~R~snL~n~akL 63 (65)
T PF11470_consen 4 YNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKH---NN---KPL-DLSLPFRLSNLPNNAKL 63 (65)
T ss_dssp TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEE---TT---EEE-SSS-BHHHH---SS-EE
T ss_pred cCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEE---CC---EEe-ccccceeecCCCCCCEE
Confidence 44455688999999999999999999999988654442 22 223 45556666677665543
No 103
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=54.94 E-value=62 Score=27.93 Aligned_cols=52 Identities=21% Similarity=0.154 Sum_probs=43.6
Q ss_pred ceEEEecCCcChHHHHHHHHhhccCC-cccceeEEEeecc-eeeEeecCccccc
Q 003370 419 PFTVTLMKHGCCKDLILALSTACCLK-IDEGLLLAEVYNH-QIFRFFENPAELI 470 (825)
Q Consensus 419 ~~~~~v~k~~~~~~l~~~l~~~~~~~-~~~~l~~~e~~~~-~~~k~~~d~~~~~ 470 (825)
-.++.+++..+..+++..+.+..++. ++++..++|+... ...+.+.+...++
T Consensus 14 ~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e~pl 67 (87)
T cd01768 14 YKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDECPL 67 (87)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCCChH
Confidence 45789999999999999999999998 7888999999887 5667777666554
No 104
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=53.35 E-value=62 Score=29.87 Aligned_cols=59 Identities=17% Similarity=0.138 Sum_probs=45.9
Q ss_pred EEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhc-------cCCCeEEEEEEe
Q 003370 76 IRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAML-------QMDQDILLEVQV 141 (825)
Q Consensus 76 ~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~-------~~~~~~~~E~~~ 141 (825)
...-...||-+|++.+--+.+.++++-||| ..+ .+| +.++||.|+|+ +....+=|=++.
T Consensus 16 ~dakes~tVlelK~~iegI~k~pp~dQrL~-kd~-----qvL-eD~kTL~d~g~t~~~akaq~pA~vgLa~r~ 81 (119)
T cd01788 16 TDAKESTTVYELKRIVEGILKRPPEDQRLY-KDD-----QLL-DDGKTLGDCGFTSQTARPQAPATVGLAFRS 81 (119)
T ss_pred eecCCcccHHHHHHHHHHHhcCChhHheee-cCc-----eee-cccccHHHcCccccccccCCCCeEEEEEec
Confidence 456778899999999999999999999999 221 455 57899999999 445555566664
No 105
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=52.28 E-value=16 Score=38.84 Aligned_cols=64 Identities=16% Similarity=0.239 Sum_probs=44.9
Q ss_pred EEEeCccccHHHHHHHHHHHhCCCCc-ceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEE
Q 003370 75 VIRLSKKASTRQLYEKVCKLRGIEQE-KARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 140 (825)
Q Consensus 75 ~~~~Sk~~ti~~L~~~v~~~~~~~~~-~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~ 140 (825)
.+.+++.+++.+|...++++.|++.+ .+.+|.=...... +.+ +.+.|+..+.|++|.-|+++..
T Consensus 88 h~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~i-e~i-~~~~t~~~~el~~GdIi~fQ~~ 152 (249)
T PF12436_consen 88 HVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMI-EPI-DPNQTFEKAELQDGDIICFQRA 152 (249)
T ss_dssp EEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEE-EE---SSSBHHHTT--TTEEEEEEE-
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEecccee-eEc-CCCCchhhcccCCCCEEEEEec
Confidence 45789999999999999999999876 7888864333333 445 6889999999999999998854
No 106
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=51.99 E-value=9.5 Score=23.27 Aligned_cols=15 Identities=33% Similarity=0.999 Sum_probs=11.2
Q ss_pred EEEeeCCCCcEEEeCCC
Q 003370 769 AYAKLIDENRWYHFDDS 785 (825)
Q Consensus 769 Ay~k~~~~~~Wy~fnDs 785 (825)
.+++ .++.||+|+++
T Consensus 2 ~W~~--~~~~wYy~~~~ 16 (19)
T PF01473_consen 2 GWVQ--DNGNWYYFDSD 16 (19)
T ss_dssp EEEE--ETTEEEEETTT
T ss_pred cCEE--ECCEEEEeCCC
Confidence 3555 47999999875
No 107
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=51.69 E-value=1e+02 Score=26.23 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=48.4
Q ss_pred ccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEE
Q 003370 68 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEV 139 (825)
Q Consensus 68 ~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~ 139 (825)
+|+.+...+.+-...|+.|-+.++-+.+++.++-+.++...+.++. .+..+.+ .|++...+.+|.+|+
T Consensus 6 LPnqQrT~V~vrpG~tl~daL~KaLk~R~l~pe~C~V~~~~~~~~~-~~~i~W~---td~~~L~geEL~V~~ 73 (74)
T cd01816 6 LPNKQRTVVNVRPGMTLRDALAKALKVRGLQPECCAVFRLGDGSSK-KLRIDWD---TDISSLIGEELQVEV 73 (74)
T ss_pred CCCCCeEEEEecCCcCHHHHHHHHHHHcCCChhHeEEEEcCCCccc-ccccchh---hhhhhccCceEEEEe
Confidence 3677777889999999999999999999999999999987544322 1221121 234445567787775
No 108
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=50.60 E-value=78 Score=28.50 Aligned_cols=59 Identities=20% Similarity=0.388 Sum_probs=45.5
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeE
Q 003370 70 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI 135 (825)
Q Consensus 70 ~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~ 135 (825)
+.+...+.+.+...++-|++.=|+..+++-+.+|.. |.+ +.. ...+|-.+++..++..|
T Consensus 29 d~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFl-FdG-~rI-----~~~~TP~~L~mEd~D~I 87 (99)
T KOG1769|consen 29 DGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFL-FDG-QRI-----RETHTPADLEMEDGDEI 87 (99)
T ss_pred CCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEE-ECC-cCc-----CCCCChhhhCCcCCcEE
Confidence 334457889999999999999999999999999876 333 222 35678888888877644
No 109
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=49.20 E-value=56 Score=24.56 Aligned_cols=60 Identities=23% Similarity=0.290 Sum_probs=41.1
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEE
Q 003370 71 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 137 (825)
Q Consensus 71 ~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~ 137 (825)
.....+.++...|+++|++.+++.++++++..+|.. .+ ..+. ....+.+.++..+..+.+
T Consensus 7 ~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~-~~-----~~~~-~~~~~~~~~~~~~~~i~~ 66 (69)
T cd00196 7 GKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLV-NG-----KILP-DSLTLEDYGLQDGDELVL 66 (69)
T ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEE-CC-----eECC-CCCcHHHcCCCCCCEEEE
Confidence 444567788999999999999999998888888874 21 1221 223335556666666554
No 110
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=47.79 E-value=54 Score=27.97 Aligned_cols=67 Identities=12% Similarity=0.134 Sum_probs=40.4
Q ss_pred eEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeEEEeecceeeEeecCcccccccccCCCcEE
Q 003370 404 MTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIV 480 (825)
Q Consensus 404 ~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~k~~~d~~~~~~~i~~~d~i~ 480 (825)
+.++|-...|. ++.+.++..+++.+|++.++...++++...-+. |..+ .+.|....-..|.+++.|+
T Consensus 2 m~I~Vk~~~G~----~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~---~~Gk---~L~d~~L~~~gi~~~~~i~ 68 (78)
T cd01804 2 MNLNIHSTTGT----RFDLSVPPDETVEGLKKRISQRLKVPKERLALL---HRET---RLSSGKLQDLGLGDGSKLT 68 (78)
T ss_pred eEEEEEECCCC----EEEEEECCcCHHHHHHHHHHHHhCCChHHEEEE---ECCc---CCCCCcHHHcCCCCCCEEE
Confidence 34445445554 267888999999999999999888866444332 3333 3444321122455555554
No 111
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=47.12 E-value=46 Score=35.36 Aligned_cols=55 Identities=27% Similarity=0.352 Sum_probs=32.5
Q ss_pred CceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccc--cCcc-CccCCHHH
Q 003370 72 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRST--SPLD-VSDQTLDD 126 (825)
Q Consensus 72 ~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~--~~l~-~~~~tl~~ 126 (825)
...++.+|+..|..+|.++|.+.++++++.+|+|.....+..+ ..+. ....||.|
T Consensus 190 ~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~~~~~~~~P~~~~~r~~~~~tL~d 247 (249)
T PF12436_consen 190 PEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFTVNPYSGKPKSQPIRYSDNGTLKD 247 (249)
T ss_dssp --EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE---TTS-S---SB--TT--S-HHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEEeccCCCCCCCccccCCCCCcHHH
Confidence 4568899999999999999999999999999999876532221 2233 44556654
No 112
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=45.59 E-value=81 Score=26.64 Aligned_cols=58 Identities=14% Similarity=0.066 Sum_probs=37.2
Q ss_pred ceEEEecCCcChHHHHHHHHhhccCCcccceeEEEeecceeeEeecCccc-ccccccCCCcEEEE
Q 003370 419 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAE-LISSIKDDEHIVAY 482 (825)
Q Consensus 419 ~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~k~~~d~~~-~~~~i~~~d~i~~y 482 (825)
++.+.++.+.++.+|++.++...++++...-++ +.+ +++.|... .-..|.++..|..|
T Consensus 13 ~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi---~~G---k~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 13 KVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLK---KWY---TIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEE---eCC---cCCCCCCCHHHcCCCCCCEEEEE
Confidence 355688899999999999999888876554433 443 34554321 12345666666554
No 113
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=43.96 E-value=90 Score=26.98 Aligned_cols=51 Identities=12% Similarity=0.117 Sum_probs=36.2
Q ss_pred EEEeCccccHHHHHHHHHHHhC-C-CCcceEEEEeccCcccccCccCccCCHHHHh--ccCC
Q 003370 75 VIRLSKKASTRQLYEKVCKLRG-I-EQEKARIWDYFNKQRSTSPLDVSDQTLDDAM--LQMD 132 (825)
Q Consensus 75 ~~~~Sk~~ti~~L~~~v~~~~~-~-~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~--~~~~ 132 (825)
.+.+.-.+||.+|++++.+.+. . +++.-||- |. + ..|. .+.||.++. +..+
T Consensus 17 ~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLI-y~----G-KiLk-D~~tL~~~~~~~~~~ 71 (79)
T cd01790 17 TVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLI-YS----G-KLLP-DHLKLRDVLRKQDEY 71 (79)
T ss_pred EEecCCcChHHHHHHHHHHhcCCCCChhHeEEE-Ec----C-eecc-chhhHHHHhhcccCC
Confidence 4444788999999999999884 3 45777876 33 3 5665 568999985 4443
No 114
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=43.45 E-value=37 Score=30.09 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=40.0
Q ss_pred EEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccC
Q 003370 75 VIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQM 131 (825)
Q Consensus 75 ~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~ 131 (825)
.+..-...||-+|+.++--++.-|.+.-|||.... +.|.+..+||-|+|+.+
T Consensus 15 f~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~-----eqlL~D~ktL~d~gfts 66 (110)
T KOG4495|consen 15 FTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDT-----EQLLDDGKTLGDCGFTS 66 (110)
T ss_pred EeecCccccHHHHHHHHHHHHhCCCcchheeecCH-----HHHhhccchhhhccccc
Confidence 34557778899999888888888999999997553 23445788999998764
No 115
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=42.40 E-value=1.4e+02 Score=25.96 Aligned_cols=52 Identities=19% Similarity=0.165 Sum_probs=42.7
Q ss_pred ceEEEecCCcChHHHHHHHHhhccCCc-ccceeEEEeecceeeEeecCccccc
Q 003370 419 PFTVTLMKHGCCKDLILALSTACCLKI-DEGLLLAEVYNHQIFRFFENPAELI 470 (825)
Q Consensus 419 ~~~~~v~k~~~~~~l~~~l~~~~~~~~-~~~l~~~e~~~~~~~k~~~d~~~~~ 470 (825)
..++.+++..|..+++..+.+..++.+ .+...++|+......+.+.+.+.++
T Consensus 17 ~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~~~~~er~L~~~e~Pl 69 (90)
T smart00314 17 YKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVLPDGKERVLPDDENPL 69 (90)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEeCCcEEEEeCCCCcce
Confidence 457889999999999999999999977 5788999998666777777665554
No 116
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=42.22 E-value=73 Score=27.52 Aligned_cols=60 Identities=17% Similarity=0.280 Sum_probs=40.0
Q ss_pred ceEEeeccCC---CceEEEeCccccHHHHHHHHHHHhCCC--CcceEEEEeccCcccccCccCcc
Q 003370 62 CLKLIDSRDN---SQTVIRLSKKASTRQLYEKVCKLRGIE--QEKARIWDYFNKQRSTSPLDVSD 121 (825)
Q Consensus 62 ~l~l~~~~~~---~~~~~~~Sk~~ti~~L~~~v~~~~~~~--~~~~rlw~~~~~~~~~~~l~~~~ 121 (825)
.++|+..... .-.++.++...|.++|.+.+.+.|++. +.+..||.+......+..|.+.+
T Consensus 4 ~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E 68 (93)
T PF00788_consen 4 VLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDE 68 (93)
T ss_dssp EEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTS
T ss_pred EEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCC
Confidence 3556543222 256899999999999999999999993 45789984443333324454333
No 117
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=41.74 E-value=1.1e+02 Score=25.85 Aligned_cols=60 Identities=17% Similarity=0.252 Sum_probs=39.4
Q ss_pred cCCCceEEEeCccccHHHHHHHHHHHhCCCCcc-eEEEE-eccCcccccCccCccCCHHHHhcc
Q 003370 69 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEK-ARIWD-YFNKQRSTSPLDVSDQTLDDAMLQ 130 (825)
Q Consensus 69 ~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~-~rlw~-~~~~~~~~~~l~~~~~tl~~~~~~ 130 (825)
.+.+..++.+.+..|.++|.+.+|..++|...+ +-|.- ....+.. ..| +.+++|.+....
T Consensus 4 lD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~-~wL-~~~k~l~~q~~~ 65 (80)
T PF09379_consen 4 LDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEH-HWL-DLDKKLKKQLKK 65 (80)
T ss_dssp SSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSE-EEE--SSSBGGGSTBT
T ss_pred cCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcc-eec-cCcccHHHHcCC
Confidence 455667889999999999999999999998543 44543 1222222 344 456677655443
No 118
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=41.67 E-value=40 Score=29.58 Aligned_cols=41 Identities=22% Similarity=0.425 Sum_probs=34.4
Q ss_pred cceEEeeccCCCceEEEeCccccHHHHHHHHHHHhCCCCcce
Q 003370 61 LCLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKA 102 (825)
Q Consensus 61 ~~l~l~~~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~ 102 (825)
..|+|. +++.....+.+.+.++..++++.+++.++++.+-+
T Consensus 2 V~L~V~-Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~ 42 (87)
T cd01777 2 VELRIA-LPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQ 42 (87)
T ss_pred eEEEEE-ccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHH
Confidence 455655 47778889999999999999999999999997754
No 119
>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine aminopeptidases belong to the peptidase family C5 (adenain family, clan CE). Several adenovirus proteins are synthesised as precursors, requiring processing by a protease before the virion is assembled [, ]. Until recently, the adenovirus endopeptidase was classified as a serine protease, having been reported to be inhibited by serine protease inhibitors [, ]. However, it has since been shown to be inhibited by cysteine protease inhibitors, and the catalytic residues are believed to be His-54 and Cys-104 [, ].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1NLN_A 1AVP_A.
Probab=38.71 E-value=43 Score=33.08 Aligned_cols=32 Identities=38% Similarity=0.503 Sum_probs=23.9
Q ss_pred EEEEEeec-CCCCCeEEEEEeeCCCCcEEEeCC
Q 003370 753 FAISNHYG-GLGGGHYTAYAKLIDENRWYHFDD 784 (825)
Q Consensus 753 ~AVv~H~G-~l~gGHYtAy~k~~~~~~Wy~fnD 784 (825)
.|+||--| ..||=|+.|++-++...+-|.||-
T Consensus 21 cAIVNT~~retGGvHWlA~Aw~P~s~t~YmFDP 53 (183)
T PF00770_consen 21 CAIVNTGGRETGGVHWLAFAWDPRSRTFYMFDP 53 (183)
T ss_dssp EEEEESS-TTT--S-EEEEEEETTTTEEEEE-T
T ss_pred eEEEecCCcccCceeEEEEEecCCcceEEEeCC
Confidence 68888888 677779999999999999999983
No 120
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=37.74 E-value=15 Score=44.38 Aligned_cols=105 Identities=22% Similarity=0.339 Sum_probs=64.6
Q ss_pred EEeeeCCCeEEEEEeeeEeeccccccc--ceeeeccCcccccccccccCCCCceEEEEEEEEEeecCCCCCeEEEEEeeC
Q 003370 697 LDLWMLPDVLVFHLKRFSYSRYLKNKL--DTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYAKLI 774 (825)
Q Consensus 697 ~~i~~lP~iLiIhLKRF~~~~~~~~Ki--~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVv~H~G~l~gGHYtAy~k~~ 774 (825)
-.|-++|+|.+|.|. +......|. .|.+.+- .++|++.--.........|+|++++.-... +++|.++|.
T Consensus 676 h~is~~P~vftIvle---wEk~ETe~eI~~T~~aL~-teidis~~y~~g~ep~t~yrLVSmv~~~e~--~~~~~C~Ay-- 747 (806)
T KOG1887|consen 676 HILSPCPPVFTIVLE---WEKSETEKEISETTKALA-TEIDISRLYREGLEPNTKYRLVSMVGNHEE--GEEYICFAY-- 747 (806)
T ss_pred hhcCCCCCeeEeeee---hhcccchHHHHHHHHHHH-hhhhHHHHhhhccCcCceeEEEEEeeeccc--cceEEEeec--
Confidence 357789999999665 111111111 2223333 256665433222235578999999976554 889999998
Q ss_pred CCCcEE--EeCCCceeecC-cCcccC------CCeEEEEEEEec
Q 003370 775 DENRWY--HFDDSHVSPVS-EGDIKT------SAAYVLFYRRVK 809 (825)
Q Consensus 775 ~~~~Wy--~fnDs~V~~v~-~~~v~s------~~AYvLFY~R~~ 809 (825)
..+.|. ..+|..+..+. +.+|++ -.+=||||+++.
T Consensus 748 e~Nrwvs~r~~~~~~e~iG~w~dvvr~c~e~~vrpeil~ye~~~ 791 (806)
T KOG1887|consen 748 EPNRWVSLRHEDSQGEVVGDWKDVVRFCGERKVRPEILFYEAQQ 791 (806)
T ss_pred cCCcchhhHHHHHHhhhccchHHHHHHHhcccccHHHHHHHHHH
Confidence 577777 88998877765 344421 226677777643
No 121
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=35.51 E-value=1.3e+02 Score=25.92 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=38.4
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCC--CcceEEEEeccCcccccCccCccCCH
Q 003370 71 NSQTVIRLSKKASTRQLYEKVCKLRGIE--QEKARIWDYFNKQRSTSPLDVSDQTL 124 (825)
Q Consensus 71 ~~~~~~~~Sk~~ti~~L~~~v~~~~~~~--~~~~rlw~~~~~~~~~~~l~~~~~tl 124 (825)
.+-.++.+++.+|..++...+.+.|++. +++..|+........+..|.+.+.-+
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e~pl 67 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDECPL 67 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCCChH
Confidence 4456899999999999999999999998 45688887665422223444444443
No 122
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=33.80 E-value=2.6e+02 Score=23.93 Aligned_cols=65 Identities=12% Similarity=0.032 Sum_probs=45.4
Q ss_pred EEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccC-CcccceeEE-EeecceeeEeecCccccc
Q 003370 406 VTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCL-KIDEGLLLA-EVYNHQIFRFFENPAELI 470 (825)
Q Consensus 406 v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~-~~~~~l~~~-e~~~~~~~k~~~d~~~~~ 470 (825)
+.|+..++.....-.++.+++..+..+++..+.+..++ .+..+..++ ....+...+.+.+.+.++
T Consensus 5 lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E~pl 71 (93)
T PF00788_consen 5 LRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDECPL 71 (93)
T ss_dssp EEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTSBHH
T ss_pred EEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCCchH
Confidence 44555565544456688999999999999999999998 455556665 445556666776655543
No 123
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=32.60 E-value=2.9e+02 Score=27.56 Aligned_cols=68 Identities=21% Similarity=0.179 Sum_probs=46.8
Q ss_pred ccceEEeeccCCCceEEEeCccccHHHHHHHHHHHhCCCC-cceEEEEeccCcccccCccCccCCHHHHhc
Q 003370 60 XLCLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQ-EKARIWDYFNKQRSTSPLDVSDQTLDDAML 129 (825)
Q Consensus 60 P~~l~l~~~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~-~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~ 129 (825)
|..++|+. .+.+...+.+....|+.+|.+.+|+.++|.. +-+-||-..........+ +...++.+...
T Consensus 3 ~~~~~V~l-~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l-~~~~~l~~~~~ 71 (207)
T smart00295 3 PRVLKVYL-LDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWL-DPAKTLLDQDV 71 (207)
T ss_pred cEEEEEEe-cCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeC-CCccCHHHhcC
Confidence 45566664 5556678889999999999999999999964 357888655443221234 34567766643
No 124
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=32.47 E-value=1.6e+02 Score=25.52 Aligned_cols=31 Identities=13% Similarity=-0.017 Sum_probs=26.2
Q ss_pred eEEEecCCcChHHHHHHHHhhccCCccccee
Q 003370 420 FTVTLMKHGCCKDLILALSTACCLKIDEGLL 450 (825)
Q Consensus 420 ~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~ 450 (825)
...++++..++.+|++.|...+|+++..+-+
T Consensus 15 ~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL 45 (84)
T cd01789 15 FEKKYSRGLTIAELKKKLELVVGTPASSMRL 45 (84)
T ss_pred eeEecCCCCcHHHHHHHHHHHHCCCccceEE
Confidence 4567899999999999999999998766544
No 125
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=32.45 E-value=2e+02 Score=28.39 Aligned_cols=55 Identities=25% Similarity=0.219 Sum_probs=42.2
Q ss_pred EEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeEEEeeccee
Q 003370 405 TVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQI 459 (825)
Q Consensus 405 ~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~ 459 (825)
.|.|-..+|...|..+.+.++...++.+|...|....+++....++++-..+..+
T Consensus 2 ~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l 56 (162)
T PF13019_consen 2 NVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQL 56 (162)
T ss_pred eEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCee
Confidence 4555667787788889999999999999999999999987766555554444443
No 126
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=31.29 E-value=2.1e+02 Score=23.82 Aligned_cols=31 Identities=6% Similarity=0.046 Sum_probs=24.9
Q ss_pred ceEEEecCCcChHHHHHHHHhhccC--Ccccce
Q 003370 419 PFTVTLMKHGCCKDLILALSTACCL--KIDEGL 449 (825)
Q Consensus 419 ~~~~~v~k~~~~~~l~~~l~~~~~~--~~~~~l 449 (825)
.+.+.+..+.++.+|++.+....++ ++.+..
T Consensus 12 ~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~ 44 (77)
T cd01805 12 TFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQK 44 (77)
T ss_pred EEEEEECCCCcHHHHHHHHHHhhCCCCChhHeE
Confidence 4667888899999999999999998 544433
No 127
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=30.86 E-value=1.2e+02 Score=26.83 Aligned_cols=62 Identities=13% Similarity=0.168 Sum_probs=38.5
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCc-ceEEEEeccCcccccCccCccCCHHHH--hccCCCeEEEEEE
Q 003370 73 QTVIRLSKKASTRQLYEKVCKLRGIEQE-KARIWDYFNKQRSTSPLDVSDQTLDDA--MLQMDQDILLEVQ 140 (825)
Q Consensus 73 ~~~~~~Sk~~ti~~L~~~v~~~~~~~~~-~~rlw~~~~~~~~~~~l~~~~~tl~~~--~~~~~~~~~~E~~ 140 (825)
+..+.++..+|+..+.+.+|+.++++.. .+-++. + + .+.-.+|+++.++ ....+.+|++...
T Consensus 17 ~~k~kI~~~~~f~~vi~fLrk~Lk~~~~~slFlYi--n-~---sFaPspDe~vg~L~~~f~~~~~Liv~Ys 81 (87)
T PF04110_consen 17 QKKFKISASQTFATVIAFLRKKLKLKPSDSLFLYI--N-N---SFAPSPDETVGDLYRCFGTNGELIVSYS 81 (87)
T ss_dssp --EEEEETTSBTHHHHHHHHHHCT----SS-EEEE--E-E---EE---TTSBHHHHHHHH-BTTBEEEEEE
T ss_pred CcEEEECCCCchHHHHHHHHHHhCCccCCeEEEEE--c-C---ccCCCchhHHHHHHHHhCCCCEEEEEEe
Confidence 4578899999999999999999999754 565553 2 1 3444577788887 3445667777654
No 128
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=30.27 E-value=37 Score=28.08 Aligned_cols=34 Identities=18% Similarity=0.450 Sum_probs=22.5
Q ss_pred CCCccccccceEEEEEEeee--CCCeEEEEEeeeEe
Q 003370 682 WYCPQCKEHRQATKKLDLWM--LPDVLVFHLKRFSY 715 (825)
Q Consensus 682 w~C~~Ck~~~~A~Kk~~i~~--lP~iLiIhLKRF~~ 715 (825)
|.||+|+...-..+++..-. +-.++=|+.+||..
T Consensus 1 y~C~KCg~~~~e~~~v~~tgg~~skiFdvq~~~f~~ 36 (64)
T PF09855_consen 1 YKCPKCGNEEYESGEVRATGGGLSKIFDVQNKKFTT 36 (64)
T ss_pred CCCCCCCCcceecceEEccCCeeEEEEEecCcEEEE
Confidence 78999998665555544322 34567778888764
No 129
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=29.64 E-value=22 Score=39.47 Aligned_cols=112 Identities=20% Similarity=0.243 Sum_probs=64.9
Q ss_pred CCcccceecCCCchhHHHHHHHHhCChHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHHHhcCC----CCccCh--
Q 003370 214 KGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSG----RAAVAP-- 287 (825)
Q Consensus 214 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~----~~~i~p-- 287 (825)
..-++|+.|.||-|+.+|..|.+.+..++...+-..-+..+....... ...+...|+..++...... ...+.|
T Consensus 175 e~t~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~-~spiS~ifgg~~rs~l~~~~nkeS~tlqPF~ 253 (420)
T KOG1871|consen 175 EFTPRGLINNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFV-RSPISEIFGGQLRSVLYQPSNKESATLQPFF 253 (420)
T ss_pred cccccccccccccccccchhhcccccCchhhhcCCcccCccCCCCCcc-cCcHHHhhccccccceeccccccccccCccc
Confidence 455899999999999999999999999998876443333333222111 1234444444433222111 111111
Q ss_pred -----------HHHHHHHhhh-----CCCCC--------CCCCCCHHHHHHHHHHHHHHHhhh
Q 003370 288 -----------RAFKGKLARF-----APQFS--------GYNQHDSQELLAFLLDGLHEDLNR 326 (825)
Q Consensus 288 -----------~~~~~~l~~~-----~~~F~--------~~~QqDA~Efl~~LLd~L~eel~~ 326 (825)
.....++..+ .|.+. ...|-++++|..+|+..|+..+-+
T Consensus 254 tlqldiq~~~i~sv~~ales~~~re~lp~~st~s~~eV~~s~q~~leklp~vlilhlkrF~ye 316 (420)
T KOG1871|consen 254 TLQLDIQSEKIHSVQDALESLVARESLPGYSTKSGQEVEASSQTTLEKLPPVLILHLKRFVYE 316 (420)
T ss_pred eeeeeeeccccCCHHHHhhccChhhcccceecCCCCeechhhhhhHhhcchhhhhhhhHHHHH
Confidence 1122222221 12222 357899999999999999977644
No 130
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=29.13 E-value=12 Score=42.65 Aligned_cols=106 Identities=19% Similarity=0.276 Sum_probs=0.0
Q ss_pred EEeeeCCCeEEEEEeeeEeecccccccceeeeccCc--------------ccccccccccCCC-----------------
Q 003370 697 LDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPIL--------------NLDLSKYMKSKDG----------------- 745 (825)
Q Consensus 697 ~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~--------------~LDls~~~~~~~~----------------- 745 (825)
+.+...|-.+||+.-||.-+-.+-.||-..+..|+. .|++-+--.....
T Consensus 516 ik~~e~pSc~iiqmprfgk~~km~~~i~pS~~l~Vtd~~e~~prQcsicg~la~yecr~c~~sp~~~sgle~~~fc~~c~ 595 (724)
T KOG3556|consen 516 IKSTETPSCQIIQMPRFGKSQKMPAAIGPSISLPVTDRHEVNPRQCSICGLLAPYECRYCPPSPPRASGLEIKQFCKTCN 595 (724)
T ss_pred cccccCcchhheeccccCcccccchhcCCceEeeccccccCCcceeeecccCCCCCCccCCCCcccccchhHhhhhhHHH
Q ss_pred ----------------------------CceEEEEEEEEEeecCCCCCeEEEEEee--------------CCCCcEEEeC
Q 003370 746 ----------------------------ESYVYDLFAISNHYGGLGGGHYTAYAKL--------------IDENRWYHFD 783 (825)
Q Consensus 746 ----------------------------~~~~YdL~AVv~H~G~l~gGHYtAy~k~--------------~~~~~Wy~fn 783 (825)
....-+|+||++-.-+ ||+|+++- ..++.=-.||
T Consensus 596 ~qfh~h~kr~~Vf~~k~l~~~~~~h~~i~~~~~el~~~l~~~t~----~~~~~~~~~~~~~a~lf~~~~~~r~~gqn~~~ 671 (724)
T KOG3556|consen 596 TQFHLHPKRNPVFLPKDLPDWDWRHGCIPCQNMELFAVLCIETS----HYVAFVKYGKDDSAWLFFDSMADRDGGQNGFN 671 (724)
T ss_pred HHHhhhcccCcccCCccCcccccccccchhhhHhhhhhhhcccc----ccccHHHhccchhhhhhhcchhhhhcccccCC
Q ss_pred CCceeecCcCcc----------------------cCCCeEEEEEE
Q 003370 784 DSHVSPVSEGDI----------------------KTSAAYVLFYR 806 (825)
Q Consensus 784 Ds~V~~v~~~~v----------------------~s~~AYvLFY~ 806 (825)
|..|++..+-.- ..++|||+.|+
T Consensus 672 ~~q~~~~~~v~e~l~~s~~~~h~ldr~i~~~~~~~~~~~~~~m~q 716 (724)
T KOG3556|consen 672 IPQVTPCPEVGEYLKMSLEDLHSLDRRIQGCARRLLCDAYMCMYQ 716 (724)
T ss_pred CccccCCcchhhHhhcchhhhHHHHHHHHHHHHHHhccccceeee
No 131
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=27.79 E-value=22 Score=41.63 Aligned_cols=107 Identities=17% Similarity=0.061 Sum_probs=53.8
Q ss_pred CCcccceecCCCchhHHHHHHHHhCChHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHHHhcCC-CCccChHHHHH
Q 003370 214 KGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSG-RAAVAPRAFKG 292 (825)
Q Consensus 214 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~-~~~i~p~~~~~ 292 (825)
..-..|+.+.+|||+||+.+|.++.++.+.-..-..-.............+.....+..+...+-... .....|. ...
T Consensus 74 ~~~~~~~~~~~~~~~~~~g~~~~~~c~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~-~~~ 152 (492)
T KOG1867|consen 74 KLEHSGNKKHNNTIDVNNGLLYCFACPDFIYDAELLKLADIKKYKEQPFHQLDSTLLTHLAEATVCQQTLLKENPK-DRL 152 (492)
T ss_pred cccccccccccccceeehhhheeccCCcEeeccchhhHHHHHhhhccchhhccchhhhhhhhhhccchhcccCCcc-ccc
Confidence 44578899999999999999999999866433211000000000000000001111111111111110 1111222 112
Q ss_pred HHhhhCCCCCCCCCCCHHHHHHHHHHHHH
Q 003370 293 KLARFAPQFSGYNQHDSQELLAFLLDGLH 321 (825)
Q Consensus 293 ~l~~~~~~F~~~~QqDA~Efl~~LLd~L~ 321 (825)
........+.|..=+++.+|+..+|..|.
T Consensus 153 ~~~~~~~~l~g~~n~g~tcfmn~ilqsl~ 181 (492)
T KOG1867|consen 153 VLSTTALGLRGLRNLGSTCFMNVILQSLL 181 (492)
T ss_pred ccceeeecccccccccHHHHHHHHHHHhh
Confidence 22334456778889999999999999886
No 132
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=27.69 E-value=2.1e+02 Score=24.27 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=32.1
Q ss_pred EEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeEEEeecce
Q 003370 405 TVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQ 458 (825)
Q Consensus 405 ~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~ 458 (825)
.++|-...|. .+.+.++...++.+|++.++...+++. ++..++-++..+
T Consensus 4 ~i~Vk~~~G~----~~~~~v~~~~TV~~lK~~I~~~~~i~~-~~qrL~~~~~G~ 52 (80)
T cd01792 4 DLKVKMLGGN----EFLVSLRDSMTVSELKQQIAQKIGVPA-FQQRLAHLDSRE 52 (80)
T ss_pred EEEEEeCCCC----EEEEEcCCCCcHHHHHHHHHHHhCCCH-HHEEEEeccCCC
Confidence 4444444444 255677888999999999999988764 444444344443
No 133
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=26.99 E-value=2.1e+02 Score=26.56 Aligned_cols=54 Identities=15% Similarity=0.150 Sum_probs=39.3
Q ss_pred cCCCce-EEEeCccccHHHHHHHHHHHhC-------CCCcceEEEEeccCcccccCccCccCCHHHHhc
Q 003370 69 RDNSQT-VIRLSKKASTRQLYEKVCKLRG-------IEQEKARIWDYFNKQRSTSPLDVSDQTLDDAML 129 (825)
Q Consensus 69 ~~~~~~-~~~~Sk~~ti~~L~~~v~~~~~-------~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~ 129 (825)
++.+.+ ...|+..+||.+|++++-.... .+.++.||-. . + .+|. .++||.++++
T Consensus 12 ~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIy-s----G-KiLe-D~~TL~d~~~ 73 (113)
T cd01814 12 YDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLIS-A----G-KILE-NSKTVGECRS 73 (113)
T ss_pred cCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEe-C----C-eecC-CCCcHHHhCC
Confidence 454433 5788999999999999987763 4467788762 2 2 4665 5689999983
No 134
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=26.07 E-value=1.5e+02 Score=24.45 Aligned_cols=41 Identities=7% Similarity=0.047 Sum_probs=30.5
Q ss_pred EEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCccccee
Q 003370 406 VTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLL 450 (825)
Q Consensus 406 v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~ 450 (825)
++|-..+|+. ..+.+....++.+|++.++...++++.+.-+
T Consensus 3 i~v~~~~g~~----~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL 43 (76)
T cd01806 3 IKVKTLTGKE----IEIDIEPTDKVERIKERVEEKEGIPPQQQRL 43 (76)
T ss_pred EEEEeCCCCE----EEEEECCCCCHHHHHHHHhHhhCCChhhEEE
Confidence 4455556653 4577889999999999999999988765443
No 135
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=25.32 E-value=1.4e+02 Score=25.25 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=28.8
Q ss_pred ceEEEecCCcChHHHHHHHHhhccCCcccceeEE
Q 003370 419 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLA 452 (825)
Q Consensus 419 ~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~ 452 (825)
.+.+.+..+.++.+|++.+....+++++.+-++.
T Consensus 11 ~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~ 44 (74)
T cd01813 11 EYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLG 44 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEe
Confidence 4677888899999999999999999887666655
No 136
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=25.28 E-value=1.6e+02 Score=25.18 Aligned_cols=43 Identities=19% Similarity=0.222 Sum_probs=35.2
Q ss_pred ccCCCceEEEeCccccHHHHHHHHHHHhCCCCcc--eEEEEeccC
Q 003370 68 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEK--ARIWDYFNK 110 (825)
Q Consensus 68 ~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~--~rlw~~~~~ 110 (825)
++++...++.+-..+|+.|+++.+|+..++++.. +||-.+.++
T Consensus 6 lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrlk~~~~e 50 (77)
T cd01818 6 LPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRLKFLRME 50 (77)
T ss_pred CCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEEEEEecC
Confidence 4777778899999999999999999999999764 676655443
No 137
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=25.22 E-value=2.7e+02 Score=25.63 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=47.4
Q ss_pred EeCCCCceeeeE-EEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCC----cccceeEEEeecceeeEeecCccc
Q 003370 394 LPLPSTVTRTMT-VTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLK----IDEGLLLAEVYNHQIFRFFENPAE 468 (825)
Q Consensus 394 Lpip~~~~~~~~-v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~----~~~~l~~~e~~~~~~~k~~~d~~~ 468 (825)
|..|.+.--..- .-++..|+..+-..-.|.|+...+..++++.|.+..-+. ++....++|+..+.-.+-+.|.+.
T Consensus 11 ~s~p~e~lef~gvmrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d~~~~s~p~FALYevh~nGe~RKL~d~E~ 90 (112)
T cd01782 11 LSYPTEDLEFHGVMRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPDMRMLSNPTYSLYEVHENGEERRLLDDEK 90 (112)
T ss_pred ecCCCcccEEeeEEEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhcccccccCCcceEEEEEecCCceEEcCCcCC
Confidence 445555432222 234455666666677899999999999999988877632 234666667665554455554443
Q ss_pred c
Q 003370 469 L 469 (825)
Q Consensus 469 ~ 469 (825)
|
T Consensus 91 P 91 (112)
T cd01782 91 P 91 (112)
T ss_pred C
Confidence 3
No 138
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=24.57 E-value=2.5e+02 Score=24.22 Aligned_cols=44 Identities=18% Similarity=0.195 Sum_probs=29.9
Q ss_pred ceEEeeccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEec
Q 003370 62 CLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYF 108 (825)
Q Consensus 62 ~l~l~~~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~ 108 (825)
-+||+-...+...-+.. .++.||+.++|+.|+++.+.++|-.+.
T Consensus 4 p~kv~~~~r~~k~Gv~A---~sL~eL~~K~~~~l~~~~~~~~lvL~e 47 (78)
T PF02017_consen 4 PFKVRNHDRSVKKGVAA---SSLEELLEKACDKLQLPEEPVRLVLEE 47 (78)
T ss_dssp EEEEEETTSSCEEEEEE---SSHHHHHHHHHHHHT-SSSTCEEEETT
T ss_pred cEEEecCCCCceEeEEc---CCHHHHHHHHHHHhCCCCcCcEEEEeC
Confidence 35555443333333333 679999999999999998888887643
No 139
>cd01779 Myosin_IXb_RA ubitquitin-like domain of Myosin_IXb_RA. Myosin_IXb_RA RasGTP binding domain from guanine nucleotide exchange factors. In some proteins the domain acts as a RasGTP effector (AF6, canoe and RalGDS, for example), but in other cases it may not bind to RasGTP at all.
Probab=23.84 E-value=2.8e+02 Score=24.81 Aligned_cols=52 Identities=19% Similarity=0.137 Sum_probs=42.2
Q ss_pred EEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeEEEeecce
Q 003370 407 TVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQ 458 (825)
Q Consensus 407 ~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~ 458 (825)
-+.|.-....++-+.|+..|+.|-.+.++.+-...++..+...+++||....
T Consensus 14 ~IyP~~~a~~~~~C~v~a~k~sTAa~VI~~~i~~L~Ld~tk~YvLaEVkEsG 65 (105)
T cd01779 14 HIYPQLIAESTISCRVTATKDSTAADVIDDVIASLQLDGTKCYVLAEVKESG 65 (105)
T ss_pred EEccCCCCCCceEeEeEeccCCcHHHHHHHHHHHhCcCccccEEEEEeeccC
Confidence 3444444455677888999999999999999999999999999999998753
No 140
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=23.78 E-value=1.1e+02 Score=24.84 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=27.3
Q ss_pred ceEEEecCCcChHHHHHHHHhhccCCcccceeE
Q 003370 419 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLL 451 (825)
Q Consensus 419 ~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~ 451 (825)
.+.+.++.+.++.+|++.++...++++....++
T Consensus 7 ~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~ 39 (69)
T PF00240_consen 7 TFTLEVDPDDTVADLKQKIAEETGIPPEQQRLI 39 (69)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEE
T ss_pred EEEEEECCCCCHHHhhhhcccccccccccceee
Confidence 467888999999999999999999887654443
No 141
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=23.24 E-value=1.9e+02 Score=23.02 Aligned_cols=29 Identities=7% Similarity=0.141 Sum_probs=23.6
Q ss_pred eEEEecCCcChHHHHHHHHhhccCCcccc
Q 003370 420 FTVTLMKHGCCKDLILALSTACCLKIDEG 448 (825)
Q Consensus 420 ~~~~v~k~~~~~~l~~~l~~~~~~~~~~~ 448 (825)
+.+.++.+.++.+|++.+++.+++++...
T Consensus 10 ~~~~~~~~~ti~~lK~~i~~~~~~~~~~~ 38 (69)
T cd01769 10 FELEVSPDDTVAELKAKIAAKEGVPPEQQ 38 (69)
T ss_pred EEEEECCCChHHHHHHHHHHHHCcChHHE
Confidence 35667788999999999999999876543
No 142
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=23.20 E-value=2e+02 Score=24.44 Aligned_cols=32 Identities=6% Similarity=-0.170 Sum_probs=26.0
Q ss_pred ceEEEecCCcChHHHHHHHHhhccCCccccee
Q 003370 419 PFTVTLMKHGCCKDLILALSTACCLKIDEGLL 450 (825)
Q Consensus 419 ~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~ 450 (825)
...+.+....|+.+++..+....|++++.+.+
T Consensus 14 t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL 45 (75)
T cd01799 14 TIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW 45 (75)
T ss_pred eEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE
Confidence 45677788899999999999999998765433
No 143
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=22.86 E-value=1.6e+02 Score=24.32 Aligned_cols=29 Identities=7% Similarity=0.080 Sum_probs=24.3
Q ss_pred eEEEecCCcChHHHHHHHHhhccCCcccc
Q 003370 420 FTVTLMKHGCCKDLILALSTACCLKIDEG 448 (825)
Q Consensus 420 ~~~~v~k~~~~~~l~~~l~~~~~~~~~~~ 448 (825)
+.+.++...++.+|++.++...++++.+.
T Consensus 13 ~~~~v~~~~tV~~lK~~i~~~~g~~~~~q 41 (76)
T cd01803 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQ 41 (76)
T ss_pred EEEEECCcCcHHHHHHHHHHHhCCCHHHe
Confidence 45788889999999999999999876543
No 144
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=22.69 E-value=2.5e+02 Score=24.84 Aligned_cols=58 Identities=17% Similarity=0.292 Sum_probs=42.8
Q ss_pred cCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCC
Q 003370 69 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQ 133 (825)
Q Consensus 69 ~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~ 133 (825)
.+.+...+.+.+.-+++.|++.-|+.-+...+.+|+. |.+.+- +.++|-.|++..++.
T Consensus 32 qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL-~dG~rI------~~dqTP~dldmEdnd 89 (103)
T COG5227 32 QDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFL-FDGKRI------DLDQTPGDLDMEDND 89 (103)
T ss_pred CCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEE-Ecceec------CCCCChhhcCCccch
Confidence 3445567788999999999999999999888888876 333221 467788888766543
No 145
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=21.43 E-value=2.5e+02 Score=23.67 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=32.6
Q ss_pred ceEEeeccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEE
Q 003370 62 CLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIW 105 (825)
Q Consensus 62 ~l~l~~~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw 105 (825)
.+|+.. +.....+.+.+..|+.+|..++++.|++..+.++|.
T Consensus 3 ~vK~~~--~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~ 44 (81)
T smart00666 3 DVKLRY--GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLK 44 (81)
T ss_pred cEEEEE--CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 344442 344557788889999999999999999987778885
No 146
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=21.42 E-value=3.1e+02 Score=24.83 Aligned_cols=58 Identities=14% Similarity=0.115 Sum_probs=39.3
Q ss_pred cCCeeEEEeCCCCceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCccccee
Q 003370 387 DPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLL 450 (825)
Q Consensus 387 e~F~~LsLpip~~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~ 450 (825)
|....+.+.++... .+.++|-...|. .+.+.+....++.++++.++...|++.+.+-+
T Consensus 13 ~~~~~~~~~~~~~~--~M~I~Vk~l~G~----~~~leV~~~~TV~~lK~kI~~~~gip~~~QrL 70 (103)
T cd01802 13 DNMGPFHYKLPFYD--TMELFIETLTGT----CFELRVSPFETVISVKAKIQRLEGIPVAQQHL 70 (103)
T ss_pred CCcceeEEeeccCC--CEEEEEEcCCCC----EEEEEeCCCCcHHHHHHHHHHHhCCChHHEEE
Confidence 34445555555433 355555555554 46678899999999999999998987655433
No 147
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=20.88 E-value=4.2e+02 Score=22.70 Aligned_cols=63 Identities=21% Similarity=0.194 Sum_probs=46.3
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEE-EE
Q 003370 73 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDIL-LE 138 (825)
Q Consensus 73 ~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~-~E 138 (825)
..++.+.-.++|..|++++++.+++.. .-||-.-....+. .+| ....||-+.|+..+-.|. +|
T Consensus 12 dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~r-qlL-~s~~sLA~yGiFs~~~i~lle 75 (80)
T cd01811 12 DWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGER-QLL-SSRKSLADYGIFSKTNICLLE 75 (80)
T ss_pred ceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCccc-ccc-cccccHhhhcceeccEEEEEe
Confidence 356778899999999999999999986 5677643333332 344 466799999999876544 56
No 148
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=20.78 E-value=2e+02 Score=24.00 Aligned_cols=31 Identities=10% Similarity=0.069 Sum_probs=25.7
Q ss_pred eEEEecCCcChHHHHHHHHhhccCCccccee
Q 003370 420 FTVTLMKHGCCKDLILALSTACCLKIDEGLL 450 (825)
Q Consensus 420 ~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~ 450 (825)
+.+.+....++.++++.++...|+++.+.-+
T Consensus 13 ~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L 43 (74)
T cd01807 13 CSLQVSEKESVSTLKKLVSEHLNVPEEQQRL 43 (74)
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCCHHHeEE
Confidence 4567889999999999999999998765444
Done!