Query 003370
Match_columns 825
No_of_seqs 405 out of 2004
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 22:58:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003370.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003370hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 100.0 4.4E-79 1.5E-83 681.9 35.3 358 213-812 4-362 (367)
2 2gfo_A Ubiquitin carboxyl-term 100.0 2.5E-75 8.7E-80 657.6 29.6 338 213-809 58-396 (396)
3 3nhe_A Ubiquitin carboxyl-term 100.0 1.2E-71 4.3E-76 615.8 33.9 341 212-812 4-346 (348)
4 3i3t_A Ubiquitin carboxyl-term 100.0 1.9E-70 6.7E-75 607.9 26.1 337 215-812 1-354 (355)
5 1nb8_A Ubiquitin carboxyl-term 100.0 1.5E-64 5.1E-69 561.5 27.9 298 213-811 2-317 (353)
6 2ayn_A Ubiquitin carboxyl-term 100.0 5.2E-64 1.8E-68 567.1 23.9 321 214-813 11-398 (404)
7 3mhs_A Ubiquitin carboxyl-term 100.0 3.2E-62 1.1E-66 564.3 28.7 315 212-809 136-474 (476)
8 1vjv_A Ubiquitin carboxyl-term 100.0 2.9E-61 9.9E-66 546.7 26.4 297 212-809 19-414 (415)
9 2f1z_A Ubiquitin carboxyl-term 100.0 6.1E-61 2.1E-65 559.2 27.0 298 213-811 171-486 (522)
10 3ihp_A Ubiquitin carboxyl-term 100.0 8.4E-59 2.9E-63 563.9 27.8 156 211-399 338-513 (854)
11 2vhf_A Ubiquitin carboxyl-term 99.9 1.2E-26 4E-31 249.5 12.8 99 216-321 8-112 (374)
12 4a3p_A Ubiquitin carboxyl-term 99.9 1E-23 3.5E-28 216.3 10.9 126 3-145 86-214 (217)
13 3jyu_A Ubiquitin carboxyl-term 99.9 1.7E-23 5.6E-28 216.7 10.7 128 3-145 95-226 (231)
14 2ylm_A Ubiquitin carboxyl-term 99.4 8.6E-12 2.9E-16 143.9 21.9 296 75-544 150-475 (530)
15 2kj6_A Tubulin folding cofacto 95.6 0.064 2.2E-06 47.0 9.8 64 73-137 28-92 (97)
16 4b6w_A Tubulin-specific chaper 95.5 0.03 1E-06 47.9 6.9 64 74-137 17-80 (86)
17 2kan_A Uncharacterized protein 95.3 0.079 2.7E-06 46.1 9.3 64 73-142 26-89 (94)
18 2kjr_A CG11242; UBL, ubiquitin 95.2 0.066 2.3E-06 46.7 8.5 65 73-138 29-93 (95)
19 1wjn_A Tubulin-folding protein 95.1 0.058 2E-06 47.1 7.8 67 73-139 24-91 (97)
20 3a9j_A Ubiquitin; protein comp 95.0 0.086 2.9E-06 43.2 8.2 65 71-142 10-74 (76)
21 1wh3_A 59 kDa 2'-5'-oligoadeny 94.8 0.11 3.9E-06 44.0 8.7 65 72-143 18-82 (87)
22 3plu_A Ubiquitin-like modifier 94.8 0.082 2.8E-06 45.7 7.6 75 56-137 15-90 (93)
23 3phx_B Ubiquitin-like protein 94.5 0.14 4.8E-06 42.5 8.5 65 70-141 13-77 (79)
24 2daf_A FLJ35834 protein; hypot 94.5 0.14 4.9E-06 46.0 8.8 76 59-141 14-89 (118)
25 1v5o_A 1700011N24RIK protein; 94.4 0.099 3.4E-06 46.1 7.5 64 73-142 23-86 (102)
26 1ndd_A NEDD8, protein (ubiquit 94.3 0.15 5E-06 41.7 8.0 65 71-142 10-74 (76)
27 2l7r_A Ubiquitin-like protein 94.2 0.14 4.8E-06 44.3 8.0 64 71-141 27-90 (93)
28 4dbg_A Ranbp-type and C3HC4-ty 94.2 0.11 3.6E-06 46.2 7.2 74 57-137 16-96 (105)
29 1sif_A Ubiquitin; hydrophobic 94.2 0.11 3.7E-06 44.5 7.1 65 72-143 20-84 (88)
30 1wx7_A Ubiquilin 3; ubiquitin- 94.2 0.18 6.1E-06 44.7 8.8 63 74-143 29-91 (106)
31 3n3k_B Ubiquitin; hydrolase, p 94.2 0.091 3.1E-06 44.2 6.6 65 72-143 14-78 (85)
32 4fbj_B NEDD8; effector-HOST ta 94.1 0.1 3.6E-06 44.5 6.8 67 70-143 9-75 (88)
33 1yqb_A Ubiquilin 3; structural 94.0 0.24 8.2E-06 43.5 9.2 61 74-141 34-94 (100)
34 2hj8_A Interferon-induced 17 k 94.0 0.24 8.2E-06 42.2 8.9 65 72-143 15-79 (88)
35 2uyz_B Small ubiquitin-related 94.0 0.16 5.4E-06 42.2 7.6 64 71-141 13-76 (79)
36 3k9o_B Ubiquitin, UBB+1; E2-25 94.0 0.16 5.6E-06 43.9 8.0 67 71-144 11-77 (96)
37 1wxv_A BAG-family molecular ch 93.9 0.22 7.4E-06 42.8 8.5 62 71-138 16-82 (92)
38 3v6c_B Ubiquitin; structural g 93.9 0.16 5.4E-06 43.6 7.6 63 71-140 27-89 (91)
39 3dbh_I NEDD8; cell cycle, acti 93.9 0.12 3.9E-06 43.9 6.7 64 71-141 22-85 (88)
40 3mtn_B UBA80, ubcep1, ubiquiti 93.8 0.16 5.5E-06 42.6 7.4 65 71-142 13-77 (85)
41 1wyw_B Ubiquitin-like protein 93.7 0.22 7.6E-06 43.4 8.4 73 62-141 21-94 (97)
42 1yx5_B Ubiquitin; proteasome, 93.7 0.21 7.3E-06 43.4 8.2 66 71-143 10-75 (98)
43 2bwf_A Ubiquitin-like protein 93.6 0.21 7.2E-06 41.0 7.6 62 70-138 12-73 (77)
44 4dwf_A HLA-B-associated transc 93.5 0.23 8E-06 42.3 8.1 63 71-141 15-77 (90)
45 3qx1_A FAS-associated factor 1 93.4 0.2 6.7E-06 42.5 7.3 69 68-140 14-83 (84)
46 2ojr_A Ubiquitin; lanthide-bin 93.3 0.28 9.7E-06 43.8 8.6 64 72-142 46-109 (111)
47 1v6e_A Cytoskeleton-associated 93.3 0.15 5.1E-06 44.3 6.5 66 73-138 20-85 (95)
48 2klc_A Ubiquilin-1; ubiquitin- 93.2 0.26 9E-06 43.3 8.0 62 72-140 35-96 (101)
49 1wy8_A NP95-like ring finger p 93.1 0.52 1.8E-05 39.9 9.5 64 73-143 20-84 (89)
50 1t0y_A Tubulin folding cofacto 92.9 0.23 7.9E-06 45.3 7.4 66 73-138 19-84 (122)
51 4hcn_B Polyubiquitin, ubiquiti 92.9 0.21 7.2E-06 43.6 6.9 65 70-141 31-95 (98)
52 4eew_A Large proline-rich prot 92.8 0.32 1.1E-05 41.3 7.8 60 70-137 26-85 (88)
53 2fnj_B Transcription elongatio 92.8 0.32 1.1E-05 44.0 8.0 66 72-144 12-84 (118)
54 3a4r_A Nfatc2-interacting prot 92.7 0.4 1.4E-05 40.1 8.1 56 73-135 20-75 (79)
55 2kk8_A Uncharacterized protein 92.7 0.47 1.6E-05 40.1 8.6 61 72-139 21-82 (84)
56 1j8c_A Ubiquitin-like protein 92.7 0.34 1.2E-05 44.4 8.2 66 71-143 41-106 (125)
57 1we6_A Splicing factor, putati 92.5 0.34 1.2E-05 43.3 7.9 65 72-143 41-106 (111)
58 3vdz_A Ubiquitin-40S ribosomal 92.5 0.38 1.3E-05 43.0 8.2 65 70-141 44-108 (111)
59 2kd0_A LRR repeats and ubiquit 92.5 0.25 8.7E-06 41.9 6.6 60 72-138 22-81 (85)
60 2wyq_A HHR23A, UV excision rep 92.4 0.49 1.7E-05 39.7 8.4 74 60-140 3-80 (85)
61 1wju_A NEDD8 ultimate buster-1 92.3 0.35 1.2E-05 42.5 7.3 60 71-137 29-88 (100)
62 2dzi_A Ubiquitin-like protein 92.3 0.36 1.2E-05 40.0 7.3 60 72-138 18-77 (81)
63 1uh6_A Ubiquitin-like 5; beta- 92.2 0.38 1.3E-05 42.2 7.4 61 71-138 38-98 (100)
64 2kdi_A Ubiquitin, vacuolar pro 92.1 0.4 1.4E-05 43.2 7.7 66 72-144 20-85 (114)
65 1wx8_A Riken cDNA 4931431F19; 92.0 0.25 8.5E-06 42.8 6.2 64 71-141 26-89 (96)
66 4ajy_B Transcription elongatio 92.0 0.29 1E-05 44.2 6.6 66 72-144 12-84 (118)
67 3m63_B Ubiquitin domain-contai 91.9 0.13 4.5E-06 45.3 4.2 62 70-138 36-97 (101)
68 3q3f_A Ribonuclease/ubiquitin 91.8 0.41 1.4E-05 47.1 8.1 66 71-143 115-180 (189)
69 1v86_A DNA segment, CHR 7, way 91.8 0.3 1E-05 42.4 6.4 58 72-137 27-84 (95)
70 3m62_B UV excision repair prot 91.5 0.28 9.7E-06 43.5 6.0 64 71-141 11-74 (106)
71 2dzk_A UBX domain-containing p 91.3 0.7 2.4E-05 41.2 8.4 68 68-139 20-89 (109)
72 2cr5_A Reproduction 8; UBX dom 91.2 0.82 2.8E-05 40.7 8.8 71 68-142 30-100 (109)
73 2io0_B Small ubiquitin-related 90.9 0.39 1.3E-05 41.4 6.1 60 70-136 14-73 (91)
74 2faz_A Ubiquitin-like containi 90.8 0.76 2.6E-05 37.8 7.7 59 75-140 17-76 (78)
75 1we7_A SF3A1 protein; structur 90.5 0.89 3E-05 40.8 8.5 63 74-143 48-110 (115)
76 1uel_A HHR23B, UV excision rep 90.2 1.1 3.7E-05 38.7 8.5 64 71-141 10-76 (95)
77 1v2y_A 3300001G02RIK protein; 89.7 0.58 2E-05 41.4 6.3 66 71-142 17-97 (105)
78 2kzr_A Ubiquitin thioesterase 89.7 0.3 1E-05 41.4 4.4 61 75-138 13-75 (86)
79 1wm3_A Ubiquitin-like protein 89.6 0.66 2.3E-05 37.9 6.2 59 70-135 10-68 (72)
80 3rt3_B Ubiquitin-like protein 89.5 1.1 3.9E-05 42.3 8.9 76 60-142 79-155 (159)
81 1ttn_A DC-UBP, dendritic cell- 89.5 0.67 2.3E-05 41.0 6.7 63 72-141 34-96 (106)
82 3u30_A Ubiquitin, linear DI-ub 89.4 1 3.6E-05 43.3 8.5 67 71-144 30-96 (172)
83 2pjh_A Protein NPL4, nuclear p 89.3 0.26 9E-06 41.4 3.6 64 73-138 15-78 (80)
84 3l0w_B Monoubiquitinated proli 88.9 1.2 4.1E-05 42.9 8.5 67 71-144 10-76 (169)
85 2eke_C Ubiquitin-like protein 88.8 0.71 2.4E-05 40.9 6.2 67 61-136 32-98 (106)
86 1wj4_A KIAA0794 protein; UBX d 88.6 0.67 2.3E-05 42.3 6.1 69 68-141 50-120 (124)
87 1v5t_A 8430435I17RIK protein; 88.5 0.77 2.6E-05 39.2 6.1 60 74-138 19-80 (90)
88 2io1_B Small ubiquitin-related 87.9 1 3.6E-05 38.9 6.6 59 71-136 17-75 (94)
89 2d07_B Ubiquitin-like protein 87.5 1.4 4.9E-05 37.9 7.2 59 71-136 27-85 (93)
90 2k8h_A Small ubiquitin protein 87.2 1.9 6.4E-05 38.5 7.9 67 61-135 27-93 (110)
91 1wf9_A NPL4 family protein; be 87.0 0.58 2E-05 41.5 4.5 66 74-140 19-94 (107)
92 1wgd_A Homocysteine-responsive 86.8 2.4 8.2E-05 36.2 8.3 61 74-141 22-86 (93)
93 1wz0_A Ubiquitin-like protein 86.6 1.6 5.3E-05 38.6 7.0 60 70-136 33-92 (104)
94 3b08_A Polyubiquitin-C, ubiqui 86.6 1.8 6.2E-05 40.3 8.1 65 71-142 86-150 (152)
95 3rt3_B Ubiquitin-like protein 86.6 2.1 7.1E-05 40.5 8.6 65 71-140 12-76 (159)
96 3kyd_D Small ubiquitin-related 85.3 2 6.8E-05 38.6 7.1 69 61-136 39-108 (115)
97 1wgg_A Ubiquitin carboxyl-term 85.0 0.7 2.4E-05 40.1 3.9 59 72-138 17-76 (96)
98 2lxa_A Ubiquitin-like protein 84.3 1.6 5.4E-05 37.2 5.8 56 77-139 19-76 (87)
99 1x1m_A Ubiquitin-like protein 84.2 2.7 9.1E-05 37.1 7.5 53 81-140 44-99 (107)
100 2jxx_A Nfatc2-interacting prot 83.8 3.7 0.00013 35.6 8.0 56 73-135 38-93 (97)
101 3b08_A Polyubiquitin-C, ubiqui 83.8 2.8 9.7E-05 38.9 8.0 66 71-143 10-75 (152)
102 3goe_A DNA repair protein RAD6 83.7 2.8 9.7E-05 34.6 6.6 61 67-134 15-76 (82)
103 4a20_A Ubiquitin-like protein 83.1 1.4 4.9E-05 38.4 5.1 59 75-140 35-95 (98)
104 1wia_A Hypothetical ubiquitin- 82.8 2.5 8.7E-05 36.2 6.6 60 73-141 19-78 (95)
105 3b1l_X E3 ubiquitin-protein li 82.9 0.27 9.2E-06 40.3 0.0 61 73-140 12-72 (76)
106 3u5e_m 60S ribosomal protein L 81.5 0.29 1E-05 45.0 0.0 64 73-143 12-75 (128)
107 3u30_A Ubiquitin, linear DI-ub 80.9 2.3 7.8E-05 40.8 6.2 64 71-141 106-169 (172)
108 2dzm_A FAS-associated factor 1 80.7 4.2 0.00014 35.5 7.2 59 73-137 20-78 (100)
109 3ai5_A Yeast enhanced green fl 80.1 5.2 0.00018 42.3 9.0 73 61-140 232-305 (307)
110 3pge_A SUMO-modified prolifera 79.5 3.7 0.00013 40.5 7.2 68 61-137 30-97 (200)
111 1s3s_G P47 protein; AAA ATPase 78.8 4.2 0.00014 37.1 6.9 66 68-138 59-125 (127)
112 2kvr_A Ubiquitin carboxyl-term 78.2 2.5 8.4E-05 38.9 5.1 40 74-113 58-97 (130)
113 2kdb_A Homocysteine-responsive 76.6 5.7 0.0002 34.5 6.8 56 73-135 37-96 (99)
114 3u5c_f 40S ribosomal protein S 76.4 0.52 1.8E-05 44.7 0.0 64 73-143 12-75 (152)
115 3tix_A Ubiquitin-like protein 76.1 2.8 9.5E-05 41.0 4.9 66 61-135 58-123 (207)
116 2gow_A HCG-1 protein, ubiquiti 74.2 6.4 0.00022 35.8 6.7 61 72-139 28-96 (125)
117 2daj_A KIAA0977 protein, COBL- 72.0 9 0.00031 32.1 6.3 66 62-131 10-76 (91)
118 1wgh_A Ubiquitin-like 3, HCG-1 70.0 12 0.0004 33.6 7.3 61 72-139 27-95 (116)
119 2dzj_A Synaptic glycoprotein S 69.1 4.8 0.00017 34.1 4.4 58 75-137 26-85 (88)
120 1w6v_A Ubiquitin carboxyl-term 68.9 1.3 4.4E-05 41.4 0.7 12 36-47 129-140 (141)
121 1rrb_A RAF-1 RBD, RAF proto-on 64.0 49 0.0017 28.8 9.6 75 63-141 21-95 (107)
122 2bps_A YUKD protein; ubiquitin 62.9 3.6 0.00012 34.5 2.2 66 69-137 14-80 (81)
123 2l05_A Serine/threonine-protei 61.4 29 0.00098 29.7 7.5 73 62-141 19-91 (95)
124 2l76_A Nfatc2-interacting prot 61.1 27 0.00093 30.0 7.4 66 61-135 22-87 (95)
125 1oqy_A HHR23A, UV excision rep 60.0 10 0.00034 41.2 5.8 64 73-143 19-86 (368)
126 1c1y_B Proto-onkogene serine/t 59.3 40 0.0014 27.7 7.8 73 63-139 4-76 (77)
127 1wxm_A A-RAF proto-oncogene se 58.0 38 0.0013 28.4 7.6 72 63-141 10-81 (86)
128 4hcn_B Polyubiquitin, ubiquiti 57.3 38 0.0013 28.8 8.1 49 399-451 18-66 (98)
129 3mtn_B UBA80, ubcep1, ubiquiti 55.3 54 0.0018 26.5 8.5 66 404-480 4-71 (85)
130 1oey_A P67-PHOX, neutrophil cy 54.7 38 0.0013 28.3 7.2 54 72-127 14-67 (83)
131 1qmy_A Protease, leader protea 54.3 5.2 0.00018 36.7 1.9 24 214-237 10-33 (167)
132 1v6e_A Cytoskeleton-associated 52.6 90 0.0031 26.3 9.7 35 418-452 19-53 (95)
133 1v5o_A 1700011N24RIK protein; 52.4 44 0.0015 28.7 7.7 56 419-480 23-80 (102)
134 1se9_A Ubiquitin family; ubiqu 51.8 32 0.0011 31.2 6.7 51 75-132 31-88 (126)
135 4b6w_A Tubulin-specific chaper 51.7 42 0.0014 28.0 7.2 62 419-480 16-79 (86)
136 3shq_A UBLCP1; phosphatase, hy 50.3 13 0.00046 39.4 4.7 63 71-138 14-77 (320)
137 1t0y_A Tubulin folding cofacto 49.1 81 0.0028 28.0 9.2 64 418-481 18-83 (122)
138 2kc2_A Talin-1, F1; FERM, adhe 49.0 63 0.0022 29.3 8.3 72 68-140 18-122 (128)
139 2al3_A TUG long isoform; TUG U 47.9 21 0.00071 30.4 4.5 63 69-138 17-79 (90)
140 3k9o_B Ubiquitin, UBB+1; E2-25 46.2 77 0.0027 26.4 8.2 66 405-481 3-70 (96)
141 2kjr_A CG11242; UBL, ubiquitin 45.8 90 0.0031 26.5 8.5 61 419-480 29-91 (95)
142 3v7o_A Minor nucleoprotein VP3 45.0 4.5 0.00016 40.0 0.0 65 62-135 23-87 (227)
143 1wju_A NEDD8 ultimate buster-1 44.9 1E+02 0.0035 26.6 8.6 62 417-485 29-92 (100)
144 1v2y_A 3300001G02RIK protein; 44.6 38 0.0013 29.6 5.9 40 403-446 7-46 (105)
145 2kj6_A Tubulin folding cofacto 43.8 81 0.0028 27.0 7.9 35 418-452 27-61 (97)
146 1wgr_A Growth factor receptor- 43.8 79 0.0027 27.4 7.7 66 402-471 8-74 (100)
147 3ivf_A Talin-1; FERM domain, c 43.7 40 0.0014 36.3 7.3 73 61-137 4-81 (371)
148 1wjn_A Tubulin-folding protein 43.1 53 0.0018 27.8 6.6 63 419-481 24-89 (97)
149 2ylm_A Ubiquitin carboxyl-term 42.7 20 0.00068 40.9 4.9 68 74-141 38-112 (530)
150 3ny5_A Serine/threonine-protei 41.7 94 0.0032 26.6 7.6 72 63-141 16-87 (96)
151 1sif_A Ubiquitin; hydrophobic 37.9 55 0.0019 27.1 5.8 44 404-451 10-53 (88)
152 3plu_A Ubiquitin-like modifier 37.7 1.4E+02 0.0049 25.4 8.3 57 419-482 33-91 (93)
153 4ekf_A Adenain; alpha and beta 37.3 30 0.001 33.3 4.3 31 753-783 40-71 (204)
154 3mp2_A Non-structural protein 37.2 30 0.001 34.2 4.5 30 758-791 166-195 (211)
155 3v6c_B Ubiquitin; structural g 36.7 71 0.0024 26.5 6.4 47 401-451 15-61 (91)
156 3dbh_I NEDD8; cell cycle, acti 36.3 70 0.0024 26.1 6.2 45 403-451 12-56 (88)
157 4eew_A Large proline-rich prot 36.0 63 0.0022 26.5 5.9 44 403-450 17-60 (88)
158 2dzi_A Ubiquitin-like protein 35.7 87 0.003 25.0 6.6 45 403-451 7-51 (81)
159 3mp2_A Non-structural protein 35.7 43 0.0015 33.1 5.3 71 214-317 10-80 (211)
160 2kk8_A Uncharacterized protein 34.3 72 0.0025 26.3 5.9 45 403-451 10-54 (84)
161 3a9j_A Ubiquitin; protein comp 33.4 70 0.0024 25.0 5.6 33 419-451 12-44 (76)
162 3n3k_B Ubiquitin; hydrolase, p 32.3 58 0.002 26.3 5.0 44 404-451 4-47 (85)
163 3uf8_A Ubiquitin-like protein 31.2 58 0.002 32.1 5.6 60 69-135 28-87 (209)
164 1ndd_A NEDD8, protein (ubiquit 30.9 77 0.0026 24.8 5.4 32 419-450 12-43 (76)
165 4fbj_B NEDD8; effector-HOST ta 29.8 91 0.0031 25.7 5.8 33 419-451 12-44 (88)
166 1ip9_A BEM1 protein; ubiquitin 29.5 1.8E+02 0.006 24.4 7.2 69 62-137 14-82 (85)
167 1yqb_A Ubiquilin 3; structural 29.3 93 0.0032 26.5 5.9 44 402-450 21-64 (100)
168 4dbg_A Ranbp-type and C3HC4-ty 28.8 89 0.003 27.3 5.7 44 406-449 25-68 (105)
169 3phx_B Ubiquitin-like protein 28.1 1E+02 0.0035 24.6 5.7 43 404-450 5-47 (79)
170 1v86_A DNA segment, CHR 7, way 27.9 64 0.0022 27.3 4.6 33 419-451 28-60 (95)
171 2hj8_A Interferon-induced 17 k 27.4 1E+02 0.0036 25.3 5.8 44 404-451 5-48 (88)
172 3vdz_A Ubiquitin-40S ribosomal 27.0 1E+02 0.0035 26.8 5.9 45 403-451 35-79 (111)
173 1wh3_A 59 kDa 2'-5'-oligoadeny 26.9 1.1E+02 0.0037 24.9 5.8 44 404-451 8-51 (87)
174 2cr8_A MDM4 protein; ZF-ranbp 26.0 20 0.0007 26.8 0.8 15 677-691 7-21 (53)
175 2klc_A Ubiquilin-1; ubiquitin- 25.9 1.6E+02 0.0055 25.0 6.9 56 419-481 36-93 (101)
176 2fe8_A PP1AB, ORF1AB, replicas 25.6 80 0.0027 33.2 5.6 32 758-792 265-296 (315)
177 4dwf_A HLA-B-associated transc 25.4 1.2E+02 0.0043 24.8 5.9 43 404-450 6-48 (90)
178 1wgg_A Ubiquitin carboxyl-term 25.2 1E+02 0.0035 26.0 5.4 54 419-480 18-74 (96)
179 1yx5_B Ubiquitin; proteasome, 25.0 1.1E+02 0.0039 25.6 5.7 33 419-451 12-44 (98)
180 1j8c_A Ubiquitin-like protein 24.2 2.8E+02 0.0095 24.6 8.4 56 419-481 43-100 (125)
181 1uh6_A Ubiquitin-like 5; beta- 24.2 1.3E+02 0.0046 25.9 5.9 44 404-451 29-72 (100)
182 1ef1_A Moesin; membrane, FERM 23.9 1.9E+02 0.0064 29.6 8.3 64 60-127 1-65 (294)
183 2faz_A Ubiquitin-like containi 23.7 1.4E+02 0.0049 23.5 5.8 45 404-451 3-48 (78)
184 1wx7_A Ubiquilin 3; ubiquitin- 23.4 1.5E+02 0.0053 25.2 6.3 45 401-450 15-59 (106)
185 2bwf_A Ubiquitin-like protein 22.4 1.3E+02 0.0046 23.5 5.4 32 419-450 15-46 (77)
186 3ix6_A TS, tsase, thymidylate 22.1 19 0.00064 38.7 0.0 67 61-136 22-88 (360)
187 4a3p_A Ubiquitin carboxyl-term 21.9 1.8E+02 0.0063 28.5 7.3 62 419-480 141-204 (217)
188 2uyz_B Small ubiquitin-related 21.9 1.5E+02 0.0052 23.4 5.7 43 404-450 4-46 (79)
189 2fe8_A PP1AB, ORF1AB, replicas 21.3 61 0.0021 34.1 3.7 74 214-316 99-173 (315)
190 1uel_A HHR23B, UV excision rep 21.1 3.5E+02 0.012 22.3 9.6 57 419-482 12-73 (95)
191 2xzm_9 RPS31E; ribosome, trans 20.8 21 0.00071 34.8 0.0 46 73-125 12-57 (189)
192 2kd0_A LRR repeats and ubiquit 20.4 1E+02 0.0035 25.3 4.3 33 419-451 23-55 (85)
193 1wgd_A Homocysteine-responsive 20.2 2.3E+02 0.0079 23.3 6.7 46 404-451 8-55 (93)
194 1zso_A Hypothetical protein; s 20.1 1.3E+02 0.0044 28.5 5.3 89 682-795 71-159 (164)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=4.4e-79 Score=681.90 Aligned_cols=358 Identities=60% Similarity=1.063 Sum_probs=321.8
Q ss_pred CCCcccceecCCCchhHHHHHHHHhCChHHHHHHHhc-CccccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHH
Q 003370 213 EKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFK 291 (825)
Q Consensus 213 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~-~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~ 291 (825)
..+|++||.|+||||||||+||||+|+|+|+++|+.. +...++..++.+..+.++.+|+.|+.+||.+....++|..|+
T Consensus 4 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~ 83 (367)
T 2y6e_A 4 IQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFK 83 (367)
T ss_dssp CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHHH
T ss_pred CCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHHH
Confidence 4689999999999999999999999999999999987 667778888888889999999999999999888999999999
Q ss_pred HHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCChHHHHHHHHhhccccCCCcccccceEEEE
Q 003370 292 GKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYK 371 (825)
Q Consensus 292 ~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~d~~~~~~~~~a~~~w~~~~~~~~SiI~~lF~G~~~ 371 (825)
.++++..+.|.+++||||||||.+|||.||+++++..++++.+.++.++.++.+.|.+.|..+..++.|+|.++|+|+++
T Consensus 84 ~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l~ 163 (367)
T 2y6e_A 84 TQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFK 163 (367)
T ss_dssp HHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEEE
T ss_pred HHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCcEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCeeeeecCCeeEEEeCCCCceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeE
Q 003370 372 STLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLL 451 (825)
Q Consensus 372 s~i~C~~C~~~S~~~e~F~~LsLpip~~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~ 451 (825)
++++|..|+++|.++|+|++|+||||....+.+.+.+
T Consensus 164 s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~------------------------------------------- 200 (367)
T 2y6e_A 164 STLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPM------------------------------------------- 200 (367)
T ss_dssp EEEECTTTCCEEEEEEEESSEEEECCC-----------------------------------------------------
T ss_pred eeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeee-------------------------------------------
Confidence 9999999999999999999999999865321110000
Q ss_pred EEeecceeeEeecCcccccccccCCCcEEEEEeccCCCCceeEEEeeecccccccccccCCcceeccccEEEEecCCCCC
Q 003370 452 AEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLS 531 (825)
Q Consensus 452 ~e~~~~~~~k~~~d~~~~~~~i~~~d~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~ 531 (825)
T Consensus 201 -------------------------------------------------------------------------------- 200 (367)
T 2y6e_A 201 -------------------------------------------------------------------------------- 200 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeEEEEecCCCCccCCCcc
Q 003370 532 GADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQK 611 (825)
Q Consensus 532 ~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (825)
T Consensus 201 -------------------------------------------------------------------------------- 200 (367)
T 2y6e_A 201 -------------------------------------------------------------------------------- 200 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCceEEEEEecCccccccCccccccCccccccccccccccCCCCCHHHHHHhhcCCcccCCCCCCCCccccccc
Q 003370 612 DSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHR 691 (825)
Q Consensus 612 ~~~~~~~~~~~i~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~w~C~~Ck~~~ 691 (825)
|.+. ......++|++||+.|+++|.|+++|.|+|++|++++
T Consensus 201 ---------------~~~~------------------------~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~~ 241 (367)
T 2y6e_A 201 ---------------LQPQ------------------------KKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQ 241 (367)
T ss_dssp ------------------------------------------------CEEHHHHHHHHTSCEECCC-CCEEETTTTEEE
T ss_pred ---------------eccc------------------------cccCCCCCHHHHHHHhcccccCCCCCCccCCCCCCCc
Confidence 0000 0002346899999999999999999999999999999
Q ss_pred eEEEEEEeeeCCCeEEEEEeeeEeecccccccceeeeccCcccccccccccCCCCceEEEEEEEEEeecCCCCCeEEEEE
Q 003370 692 QATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYA 771 (825)
Q Consensus 692 ~A~Kk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVv~H~G~l~gGHYtAy~ 771 (825)
.|+|++.|+++|+||+||||||.|+++.+.|+++.|+||++.|||++|+..+......|+|+|||+|+|++++|||+||+
T Consensus 242 ~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~~ 321 (367)
T 2y6e_A 242 QATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYGAMGVGHYTAYA 321 (367)
T ss_dssp CCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSSSCCCEEEEEEEEEEECSSSSCEEEEEE
T ss_pred eEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCCCCCceEEEEEEeecCCCCCCCeeeEEE
Confidence 99999999999999999999999998888999999999987899999999877677899999999999999999999999
Q ss_pred eeCCCCcEEEeCCCceeecCcCcccCCCeEEEEEEEecCCc
Q 003370 772 KLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRVKSKT 812 (825)
Q Consensus 772 k~~~~~~Wy~fnDs~V~~v~~~~v~s~~AYvLFY~R~~~~~ 812 (825)
|+..+++||+|||+.|+++++++|.+.+||||||+|++.+.
T Consensus 322 ~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~~~ 362 (367)
T 2y6e_A 322 KNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDDEF 362 (367)
T ss_dssp ECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC--
T ss_pred EcCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcCCCC
Confidence 98668999999999999999999999999999999998653
No 2
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=2.5e-75 Score=657.61 Aligned_cols=338 Identities=48% Similarity=0.880 Sum_probs=307.9
Q ss_pred CCCcccceecCCCchhHHHHHHHHhCChHHHHHHHhc-CccccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHH
Q 003370 213 EKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFK 291 (825)
Q Consensus 213 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~-~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~ 291 (825)
..+|++||.|+||||||||+||||+|+|+|++||+.. +..+++..++++..+.++.+|+.|++.||.+....++|..|+
T Consensus 58 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~~f~ 137 (396)
T 2gfo_A 58 SGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFK 137 (396)
T ss_dssp SSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECCHHHH
T ss_pred CCCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCCCceECHHHHH
Confidence 4689999999999999999999999999999999987 556677777888888999999999999999888899999999
Q ss_pred HHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCChHHHHHHHHhhccccCCCcccccceEEEE
Q 003370 292 GKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYK 371 (825)
Q Consensus 292 ~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~d~~~~~~~~~a~~~w~~~~~~~~SiI~~lF~G~~~ 371 (825)
.+++...+.|.+++||||||||.+|||.||+++++...+++.+..+.++.++...|.+.|..+..++.++|.++|+|+++
T Consensus 138 ~~l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~l~ 217 (396)
T 2gfo_A 138 ITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFK 217 (396)
T ss_dssp HHHHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCEEEE
T ss_pred HHHHHhchhhcCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccchhhHHHHHHHHhhhccCCccchhhCcEEE
Confidence 99999999999999999999999999999999998877766666677778888999999999999999999999999999
Q ss_pred EEEEcCCCCCeeeeecCCeeEEEeCCCCceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeE
Q 003370 372 STLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLL 451 (825)
Q Consensus 372 s~i~C~~C~~~S~~~e~F~~LsLpip~~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~ 451 (825)
++++|..|+++|.++|+|++|+|+||...
T Consensus 218 s~i~C~~C~~~s~~~e~f~~LsL~ip~~~--------------------------------------------------- 246 (396)
T 2gfo_A 218 STVQCLTCHKKSRTFEAFMYLSLPLASTS--------------------------------------------------- 246 (396)
T ss_dssp EEEEETTTCCEEEEEEEESSEEECCSCSS---------------------------------------------------
T ss_pred EEEEeCCCCceecccccceeeeecccccc---------------------------------------------------
Confidence 99999999999999999999999997320
Q ss_pred EEeecceeeEeecCcccccccccCCCcEEEEEeccCCCCceeEEEeeecccccccccccCCcceeccccEEEEecCCCCC
Q 003370 452 AEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLS 531 (825)
Q Consensus 452 ~e~~~~~~~k~~~d~~~~~~~i~~~d~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~ 531 (825)
T Consensus 247 -------------------------------------------------------------------------------- 246 (396)
T 2gfo_A 247 -------------------------------------------------------------------------------- 246 (396)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeEEEEecCCCCccCCCcc
Q 003370 532 GADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQK 611 (825)
Q Consensus 532 ~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (825)
T Consensus 247 -------------------------------------------------------------------------------- 246 (396)
T 2gfo_A 247 -------------------------------------------------------------------------------- 246 (396)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCceEEEEEecCccccccCccccccCccccccccccccccCCCCCHHHHHHhhcCCcccCCCCCCCCccccccc
Q 003370 612 DSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHR 691 (825)
Q Consensus 612 ~~~~~~~~~~~i~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~w~C~~Ck~~~ 691 (825)
..+|++||+.|+++|.|+++|.|+|++|++++
T Consensus 247 ------------------------------------------------~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~~~ 278 (396)
T 2gfo_A 247 ------------------------------------------------KCTLQDCLRLFSKEEKLTDNNRFYCSHCRARR 278 (396)
T ss_dssp ------------------------------------------------EEEHHHHHHHHTSCEEECSTTCEEETTTTEEE
T ss_pred ------------------------------------------------cCCHHHHHHHhCCcccccCCcccccCCccccc
Confidence 13799999999999999999999999999999
Q ss_pred eEEEEEEeeeCCCeEEEEEeeeEeecccccccceeeeccCcccccccccccCCCCceEEEEEEEEEeecCCCCCeEEEEE
Q 003370 692 QATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYA 771 (825)
Q Consensus 692 ~A~Kk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVv~H~G~l~gGHYtAy~ 771 (825)
.|+|++.|+++|+|||||||||.++..++.|+++.|.||++.|||++|+..+......|+|+|||+|+|++++|||+||+
T Consensus 279 ~a~k~~~i~~lP~vLiihLkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~v 358 (396)
T 2gfo_A 279 DSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYC 358 (396)
T ss_dssp CEEEEEEEEECCSEEEEEECCEEECSSSEEECCCEEECCSSCBCCGGGBCSCCSSCCCBEEEEEEEEESCTTTCEEEEEE
T ss_pred ceEEEEEEecCCcEEEEEecceeccCccceecCceEecchhhccccccccCCCCCCceEEEEEEEEecCCCCCCceEEEE
Confidence 99999999999999999999999998788999999999987899999998766666889999999999999999999999
Q ss_pred eeCCCCcEEEeCCCceeecCcCcccCCCeEEEEEEEec
Q 003370 772 KLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRVK 809 (825)
Q Consensus 772 k~~~~~~Wy~fnDs~V~~v~~~~v~s~~AYvLFY~R~~ 809 (825)
|+..+++||.|||+.|+++++++|.+.+||||||+|++
T Consensus 359 ~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~ 396 (396)
T 2gfo_A 359 KNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTSLG 396 (396)
T ss_dssp EETTTTEEEEEETTEEEECCHHHHSCTTEEEEEEECC-
T ss_pred cCCCCCCEEEEeCCCeEECCHHHcCCCCceEEEEEEcC
Confidence 98778999999999999999999999999999999975
No 3
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=1.2e-71 Score=615.77 Aligned_cols=341 Identities=42% Similarity=0.771 Sum_probs=307.1
Q ss_pred CCCCcccceecCCCchhHHHHHHHHhCChHHHHHHHhc-CccccccCCCCCchhHHHHHHHHHHHHHh-cCCCCccChHH
Q 003370 212 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLW-SSGRAAVAPRA 289 (825)
Q Consensus 212 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~-~~~~~~~~n~~~~~~~l~~~l~~L~~~l~-~~~~~~i~p~~ 289 (825)
+..+|++||.|+||||||||+||||+|+|+||+++++. +....+.. ......++.+|+.|+..|| .+....++|..
T Consensus 4 k~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~--~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~ 81 (348)
T 3nhe_A 4 KSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHG--SNAHTALVEEFAKLIQTIWTSSPNDVVSPSE 81 (348)
T ss_dssp --CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSS--CCTTHHHHHHHHHHHHHHTTCCTTCEECCHH
T ss_pred CCCCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccC--CCcccHHHHHHHHHHHHHHcCCCCCccCHHH
Confidence 35789999999999999999999999999999999976 44333322 2346789999999999999 56678999999
Q ss_pred HHHHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCChHHHHHHHHhhccccCCCcccccceEE
Q 003370 290 FKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQ 369 (825)
Q Consensus 290 ~~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~d~~~~~~~~~a~~~w~~~~~~~~SiI~~lF~G~ 369 (825)
|+.+++...+.|.+++||||||||.+|||.||+++++...++.....+.+..++.+.+.+.|..+..++.++|.++|+|+
T Consensus 82 ~~~~l~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~ 161 (348)
T 3nhe_A 82 FKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQ 161 (348)
T ss_dssp HHHHHHHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHHCEE
T ss_pred HHHHHHHhhhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHhhcCCccccccceE
Confidence 99999999999999999999999999999999999988777766666777788889999999999999999999999999
Q ss_pred EEEEEEcCCCCCeeeeecCCeeEEEeCCCCceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccce
Q 003370 370 YKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGL 449 (825)
Q Consensus 370 ~~s~i~C~~C~~~S~~~e~F~~LsLpip~~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l 449 (825)
++++++|..|++.+.++|+|++|+||||...
T Consensus 162 ~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~------------------------------------------------- 192 (348)
T 3nhe_A 162 LKSSLTCTDCGYCSTVFDPFWDLSLPIAKRG------------------------------------------------- 192 (348)
T ss_dssp EEEEEEETTTCCEEEEEEEESSEEECCCSSC-------------------------------------------------
T ss_pred EEEEEEcCCCCCEeeeeccceEEeeeCCCcc-------------------------------------------------
Confidence 9999999999999999999999999997321
Q ss_pred eEEEeecceeeEeecCcccccccccCCCcEEEEEeccCCCCceeEEEeeecccccccccccCCcceeccccEEEEecCCC
Q 003370 450 LLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEH 529 (825)
Q Consensus 450 ~~~e~~~~~~~k~~~d~~~~~~~i~~~d~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~ 529 (825)
T Consensus 193 -------------------------------------------------------------------------------- 192 (348)
T 3nhe_A 193 -------------------------------------------------------------------------------- 192 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCHHHHHHHHHHHccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeEEEEecCCCCccCCC
Q 003370 530 LSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPI 609 (825)
Q Consensus 530 ~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (825)
T Consensus 193 -------------------------------------------------------------------------------- 192 (348)
T 3nhe_A 193 -------------------------------------------------------------------------------- 192 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCceEEEEEecCccccccCccccccCccccccccccccccCCCCCHHHHHHhhcCCcccCCCCCCCCccccc
Q 003370 610 QKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKE 689 (825)
Q Consensus 610 ~~~~~~~~~~~~~i~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~w~C~~Ck~ 689 (825)
...++|++||+.|+.+|.|++++.|+|++|++
T Consensus 193 ------------------------------------------------~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~ 224 (348)
T 3nhe_A 193 ------------------------------------------------YPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRG 224 (348)
T ss_dssp ------------------------------------------------SSCEEHHHHHHHHHSCEEECGGGCCEETTTTE
T ss_pred ------------------------------------------------cCCCCHHHHHHHhcCceEecCCCceECCCCCC
Confidence 01248999999999999999999999999999
Q ss_pred cceEEEEEEeeeCCCeEEEEEeeeEeecccccccceeeeccCcccccccccccCCCCceEEEEEEEEEeecCCCCCeEEE
Q 003370 690 HRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTA 769 (825)
Q Consensus 690 ~~~A~Kk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVv~H~G~l~gGHYtA 769 (825)
++.|+|++.|+++|+||+||||||.++.....|+.+.|.||++.|||++|+.... ....|+|+|||+|.|++.+|||+|
T Consensus 225 ~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~K~~~~v~fp~~~ldl~~~~~~~~-~~~~Y~L~avv~H~G~~~~GHY~~ 303 (348)
T 3nhe_A 225 RKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENT-NHAVYNLYAVSNHSGTTMGGHYTA 303 (348)
T ss_dssp ECCEEEEEEEEECCSEEEEEECCBCCCSSCCCBCCCCEECCSSCEECGGGBCTTC-CCCEEEEEEEEEEEECSSCEEEEE
T ss_pred cccEEEEEEeecCCceEEEEEEcccccCCceeecCcceeccCCcCCHhhhcCCCC-CCCcEEEEEEEEccCCCCCcccEE
Confidence 9999999999999999999999999998888999999999988899999997654 457899999999999999999999
Q ss_pred EEeeCCCCcEEEeCCCceeecCcCcccCCCeEEEEEEEecCCc
Q 003370 770 YAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRVKSKT 812 (825)
Q Consensus 770 y~k~~~~~~Wy~fnDs~V~~v~~~~v~s~~AYvLFY~R~~~~~ 812 (825)
|+|+..+++||+|||+.|+++++++|.+.+||||||+|++.++
T Consensus 304 ~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aY~LfY~r~~~~~ 346 (348)
T 3nhe_A 304 YCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELASPPS 346 (348)
T ss_dssp EEECTTTCCEEEEETTEEEEECGGGTCCTTEEEEEEEECC---
T ss_pred EEccCCCCcEEEEeCCCceECCHHHcCCCCceEEEEEecCCCC
Confidence 9998778999999999999999999999999999999998654
No 4
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=1.9e-70 Score=607.89 Aligned_cols=337 Identities=39% Similarity=0.681 Sum_probs=283.7
Q ss_pred CcccceecCCCchhHHHHHHHHhCChHHHHHHHhc-CccccccCCCCCchhHHHHHHHHHHHHHhcCCC-CccChHHHHH
Q 003370 215 GGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGR-AAVAPRAFKG 292 (825)
Q Consensus 215 ~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~-~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~-~~i~p~~~~~ 292 (825)
.|++||.|+||||||||+||||+|+|+||++|++. +....+. .+...+++.+|+.|+..||.+.. ..++|..|+.
T Consensus 1 TG~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~---~~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~ 77 (355)
T 3i3t_A 1 SGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPG---GGRAQELTEAFADVIGALWHPDSCEAVNPTRFRA 77 (355)
T ss_dssp --CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC---------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHH
T ss_pred CCCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCC---CCchhHHHHHHHHHHHHHhcCCCCCcccHHHHHH
Confidence 48999999999999999999999999999999875 3222221 23345799999999999998765 7899999999
Q ss_pred HHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCCccc---------------ccCCCCCChHHHHHHHHhhcccc
Q 003370 293 KLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIE---------------MKDSGGRPDEEVANECWKNHKAR 357 (825)
Q Consensus 293 ~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~---------------~~d~~~~~~~~~a~~~w~~~~~~ 357 (825)
++++..+.|.+++||||||||.+|||.||+++++..++.... ........+...+...|..+..+
T Consensus 78 ~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (355)
T 3i3t_A 78 VFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLER 157 (355)
T ss_dssp HHHHHCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHH
T ss_pred HHHHhChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999998765432211 11122345667788899999999
Q ss_pred CCCcccccceEEEEEEEEcCCCCCeeeeecCCeeEEEeCCCCceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHH
Q 003370 358 NDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILAL 437 (825)
Q Consensus 358 ~~SiI~~lF~G~~~s~i~C~~C~~~S~~~e~F~~LsLpip~~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l 437 (825)
+.|+|.++|+|++++.++|..|++.+.++|+|++|+|+||....
T Consensus 158 ~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~------------------------------------ 201 (355)
T 3i3t_A 158 EDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGF------------------------------------ 201 (355)
T ss_dssp CCSHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC---------------------------------------
T ss_pred cCCcccccccEEEEeeEEeCCCCCCceeeccceeecccCCcccc------------------------------------
Confidence 99999999999999999999999999999999999999974210
Q ss_pred HhhccCCcccceeEEEeecceeeEeecCcccccccccCCCcEEEEEeccCCCCceeEEEeeecccccccccccCCcceec
Q 003370 438 STACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLF 517 (825)
Q Consensus 438 ~~~~~~~~~~~l~~~e~~~~~~~k~~~d~~~~~~~i~~~d~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 517 (825)
T Consensus 202 -------------------------------------------------------------------------------- 201 (355)
T 3i3t_A 202 -------------------------------------------------------------------------------- 201 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEEecCCCCCHHHHHHHHHHHccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeEEE
Q 003370 518 GAPLVTYLEEEHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLS 597 (825)
Q Consensus 518 g~P~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (825)
T Consensus 202 -------------------------------------------------------------------------------- 201 (355)
T 3i3t_A 202 -------------------------------------------------------------------------------- 201 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCccCCCccCCCCCCCCceEEEEEecCccccccCccccccCccccccccccccccCCCCCHHHHHHhhcCCcccC
Q 003370 598 LTDERISSCKPIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLG 677 (825)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~ 677 (825)
....++|++||+.|+++|.|+
T Consensus 202 -----------------------------------------------------------~~~~~sl~~~L~~~~~~e~l~ 222 (355)
T 3i3t_A 202 -----------------------------------------------------------AGGKVSLRDCFNLFTKEEELE 222 (355)
T ss_dssp ---------------------------------------------------------------CBHHHHHHHHHCCEEEC
T ss_pred -----------------------------------------------------------ccCccCHHHHHHHhCCccccC
Confidence 012358999999999999999
Q ss_pred CCCCCCCccccccceEEEEEEeeeCCCeEEEEEeeeEeecccccccceeeeccCcccccccccccCCCCceEEEEEEEEE
Q 003370 678 PDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISN 757 (825)
Q Consensus 678 ~~d~w~C~~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVv~ 757 (825)
++|.|+|++|++++.|+|++.|+++|+||+||||||.+++....|+++.|.||++.|||++|+.... ....|+|+|||+
T Consensus 223 ~~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~~~~~~~-~~~~Y~L~avv~ 301 (355)
T 3i3t_A 223 SENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKA-GSPVYQLYALCN 301 (355)
T ss_dssp GGGCCCCSSSCCCCCEEEEEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGGGBC-----CCEEEEEEEEE
T ss_pred CCCCeeCCCCCCccceEEEEEcccCChheEEEhhheecCCCCceECCcceeCCccccCchhhccCCC-CCcceEEEEEEE
Confidence 9999999999999999999999999999999999999998888999999999998899999997654 457899999999
Q ss_pred eecCCCCCeEEEEEeeCCCCcEEEeCCCceeecCcCcccCCCeEEEEEEEecCCc
Q 003370 758 HYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRVKSKT 812 (825)
Q Consensus 758 H~G~l~gGHYtAy~k~~~~~~Wy~fnDs~V~~v~~~~v~s~~AYvLFY~R~~~~~ 812 (825)
|+|++++|||+||+|. .++||+|||+.|+++++++|.+.+||||||+|++.++
T Consensus 302 H~G~~~~GHY~~~~~~--~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~~~~ 354 (355)
T 3i3t_A 302 HSGSVHYGHYTALCRC--QTGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQEPP 354 (355)
T ss_dssp EEEETTEEEEEEEEEE--TTEEEEEETTEEEEECHHHHHTSCCSEEEEEEC----
T ss_pred ecCCCCCCeEEEEEEc--CCeEEEEcCCCcEECCHHHcCCCCcEEEEEEeccCCC
Confidence 9999999999999996 6779999999999999999999999999999998654
No 5
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=1.5e-64 Score=561.48 Aligned_cols=298 Identities=26% Similarity=0.420 Sum_probs=256.1
Q ss_pred CCCcccceecCCCchhHHHHHHHHhCChHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHH
Q 003370 213 EKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKG 292 (825)
Q Consensus 213 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~ 292 (825)
..+|++||.|+||||||||+||||+|+|+||++|+..-... ......+..+|+.||..|+.+. .++.|..|+.
T Consensus 2 ~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~------~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~l~~ 74 (353)
T 1nb8_A 2 KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG------DDSSKSVPLALQRVFYELQHSD-KPVGTKKLTK 74 (353)
T ss_dssp CCSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTT------SCTTTCHHHHHHHHHHHHHHCS-SCBCCHHHHH
T ss_pred CCCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCCC------CcccccHHHHHHHHHHHHhhcC-CCCCCHHHHh
Confidence 46899999999999999999999999999999997541110 1123468899999999999854 5789999988
Q ss_pred HHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCChHHHHHHHHhhccccCCCcccccceEEEEE
Q 003370 293 KLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKS 372 (825)
Q Consensus 293 ~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~d~~~~~~~~~a~~~w~~~~~~~~SiI~~lF~G~~~s 372 (825)
+++ .+.|.+++||||||||.+|||.||++++.. ...++|.++|+|++++
T Consensus 75 ~~~--~~~~~~~~QqDA~EFl~~LLd~L~~~~~~~-----------------------------~~~s~i~~~F~g~~~~ 123 (353)
T 1nb8_A 75 SFG--WETLDSFMQHDVQELCRVLLDNVENKMKGT-----------------------------CVEGTIPKLFRGKMVS 123 (353)
T ss_dssp HHT--CCBTTTTTTSCHHHHHHHHHHHHHHHTTTS-----------------------------TTTTHHHHHHCEEEEE
T ss_pred hcC--CCCCCcccchhHHHHHHHHHHHHHHHhcCC-----------------------------CccchhhhhceeEEEE
Confidence 875 378999999999999999999999987531 1346799999999999
Q ss_pred EEEcCCCCCeeeeecCCeeEEEeCCCCceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeEE
Q 003370 373 TLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLA 452 (825)
Q Consensus 373 ~i~C~~C~~~S~~~e~F~~LsLpip~~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~ 452 (825)
+++|..|++.|.++|+|++|+|+||..
T Consensus 124 ~i~C~~C~~~s~~~e~f~~LsL~i~~~----------------------------------------------------- 150 (353)
T 1nb8_A 124 YIQCKEVDYRSDRREDYYDIQLSIKGK----------------------------------------------------- 150 (353)
T ss_dssp EEEESSSCCEEEEEEEESCEEECCTTC-----------------------------------------------------
T ss_pred EEEeccCCCeeceeeeeEEEEEEECCC-----------------------------------------------------
Confidence 999999999999999999999998621
Q ss_pred EeecceeeEeecCcccccccccCCCcEEEEEeccCCCCceeEEEeeecccccccccccCCcceeccccEEEEecCCCCCH
Q 003370 453 EVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSG 532 (825)
Q Consensus 453 e~~~~~~~k~~~d~~~~~~~i~~~d~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~ 532 (825)
T Consensus 151 -------------------------------------------------------------------------------- 150 (353)
T 1nb8_A 151 -------------------------------------------------------------------------------- 150 (353)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeEEEEecCCCCccCCCccC
Q 003370 533 ADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKD 612 (825)
Q Consensus 533 ~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (825)
T Consensus 151 -------------------------------------------------------------------------------- 150 (353)
T 1nb8_A 151 -------------------------------------------------------------------------------- 150 (353)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCceEEEEEecCccccccCccccccCccccccccccccccCCCCCHHHHHHhhcCCcccCCCCCCCCccccccce
Q 003370 613 SILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQ 692 (825)
Q Consensus 613 ~~~~~~~~~~i~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~w~C~~Ck~~~~ 692 (825)
.+|.+||+.|+.+|.|++++.|+|+.|+ ++.
T Consensus 151 ------------------------------------------------~~l~~~L~~~~~~E~l~~~~~~~C~~c~-~~~ 181 (353)
T 1nb8_A 151 ------------------------------------------------KNIFESFVDYVAVEQLDGDNKYDAGEHG-LQE 181 (353)
T ss_dssp ------------------------------------------------SBHHHHHHHHTCCEEECTTTCEECGGGC-EEC
T ss_pred ------------------------------------------------cchHHHHHHhhCccccCCCccccCCcCc-cEe
Confidence 1578999999999999999999999996 688
Q ss_pred EEEEEEeeeCCCeEEEEEeeeEeec--ccccccceeeeccCcccccccccccCC-CCceEEEEEEEEEeecCCCCCeEEE
Q 003370 693 ATKKLDLWMLPDVLVFHLKRFSYSR--YLKNKLDTFVNFPILNLDLSKYMKSKD-GESYVYDLFAISNHYGGLGGGHYTA 769 (825)
Q Consensus 693 A~Kk~~i~~lP~iLiIhLKRF~~~~--~~~~Ki~~~V~FPl~~LDls~~~~~~~-~~~~~YdL~AVv~H~G~l~gGHYtA 769 (825)
|+|++.|+++|+||+||||||.|+. +...|+++.|.||. .|||++|+.... ..+..|+|+|||+|+|++++|||+|
T Consensus 182 a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~-~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a 260 (353)
T 1nb8_A 182 AEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPE-QLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVV 260 (353)
T ss_dssp EEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCCS-EEECGGGBSSCCTTSCCEEEEEEEEEEESSTTCCCEEE
T ss_pred eEEEEEhhcCCCceEEEEecEEEecccCceEecCcEEECCC-eeehhhhhcccCCCCCceEEEEEEEEEeCCCCCcEEEE
Confidence 9999999999999999999999985 45789999999995 999999998643 2457899999999999999999999
Q ss_pred EEeeCCCCcEEEeCCCceeecCcCccc---------------CCCeEEEEEEEecCC
Q 003370 770 YAKLIDENRWYHFDDSHVSPVSEGDIK---------------TSAAYVLFYRRVKSK 811 (825)
Q Consensus 770 y~k~~~~~~Wy~fnDs~V~~v~~~~v~---------------s~~AYvLFY~R~~~~ 811 (825)
|+|+..+++||.|||+.|+++++++|. +.+||||||+|++..
T Consensus 261 ~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~gg~~~~~~~~~~~~aYiLfY~r~~~~ 317 (353)
T 1nb8_A 261 YLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESKL 317 (353)
T ss_dssp EECTTSSSCCEEEETTEEEECCHHHHTGGGSCCC-------CCEEEEEEEEEETTTH
T ss_pred EEecCCCCCEEEEECcceEECCHHHHHHHhcCCCccccccCcCCeEEEEEEEECchh
Confidence 999777899999999999999988775 368999999999864
No 6
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=5.2e-64 Score=567.07 Aligned_cols=321 Identities=25% Similarity=0.391 Sum_probs=258.2
Q ss_pred CCcccceecCCCchhHHHHHHHHhCChHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHHH
Q 003370 214 KGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGK 293 (825)
Q Consensus 214 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~ 293 (825)
..+++||.|+||||||||+||||+|+|+|+++|++... ......+.....+++++|+.||..||.+. .+++|..|+.+
T Consensus 11 ~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~lf~~l~~~~-~~v~P~~~~~~ 88 (404)
T 2ayn_A 11 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAG-ALRASGEMASAQYITAALRDLFDSMDKTS-SSIPPIILLQF 88 (404)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCC-CC------CHHHHHHHHHHHHHHHHHHHC-SEECCHHHHHH
T ss_pred cCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhccc-ccccCCCCCcccHHHHHHHHHHHHHhcCC-CcCChHHHHHH
Confidence 56789999999999999999999999999999987521 11111223446789999999999999865 89999999999
Q ss_pred HhhhCCCCC------CCCCCCHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCChHHHHHHHHhhccccCCCcccccce
Q 003370 294 LARFAPQFS------GYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQ 367 (825)
Q Consensus 294 l~~~~~~F~------~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~d~~~~~~~~~a~~~w~~~~~~~~SiI~~lF~ 367 (825)
++...|.|. +++||||||||.+|||.||++++.....+. .+..+...|..+...+.++|.++|+
T Consensus 89 l~~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~----------~e~~~~~~~~~~~~~~~s~i~~~F~ 158 (404)
T 2ayn_A 89 LHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSV----------KETDSSSASAATPSKKKSLIDQFFG 158 (404)
T ss_dssp HHHHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC----------------------------CCHHHHHTC
T ss_pred HHHhCchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCcc----------cccchhhhhhhhccccCchhhhhcc
Confidence 999999997 599999999999999999999865432110 1112345677777888999999999
Q ss_pred EEEEEEEEcCCCCCee--eeecCCeeEEEeCCCCceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCc
Q 003370 368 GQYKSTLVCPVCSKVS--ITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKI 445 (825)
Q Consensus 368 G~~~s~i~C~~C~~~S--~~~e~F~~LsLpip~~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~ 445 (825)
|+++++++|..|++++ .++|+|++|+|+||..
T Consensus 159 G~l~s~i~C~~C~~~s~s~~~e~f~~Lsl~i~~~---------------------------------------------- 192 (404)
T 2ayn_A 159 VEFETTMKCTESEEEEVTKGKENQLQLSCFINQE---------------------------------------------- 192 (404)
T ss_dssp EEEEEEEEESSSCCCCCBCCEEEESSEEEECSSS----------------------------------------------
T ss_pred EEEEEEEEecCCCCccCceeeccCceEEeecCCC----------------------------------------------
Confidence 9999999999999995 7999999999998621
Q ss_pred ccceeEEEeecceeeEeecCcccccccccCCCcEEEEEeccCCCCceeEEEeeecccccccccccCCcceeccccEEEEe
Q 003370 446 DEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYL 525 (825)
Q Consensus 446 ~~~l~~~e~~~~~~~k~~~d~~~~~~~i~~~d~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~ 525 (825)
T Consensus 193 -------------------------------------------------------------------------------- 192 (404)
T 2ayn_A 193 -------------------------------------------------------------------------------- 192 (404)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCHHHHHHHHHHHccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeEEEEecCCCCc
Q 003370 526 EEEHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISS 605 (825)
Q Consensus 526 ~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (825)
T Consensus 193 -------------------------------------------------------------------------------- 192 (404)
T 2ayn_A 193 -------------------------------------------------------------------------------- 192 (404)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCccCCCCCCCCceEEEEEecCccccccCccccccCccccccccccccccCCCCCHHHHHHhhcCCcccCCCCCCCCc
Q 003370 606 CKPIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCP 685 (825)
Q Consensus 606 ~~~~~~~~~~~~~~~~~i~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~w~C~ 685 (825)
..+|++||+.|+.+ .+. |+|+
T Consensus 193 ------------------------------------------------------~~~l~~~L~~~~~e-~l~----~~c~ 213 (404)
T 2ayn_A 193 ------------------------------------------------------VKYLFTGLKLRLQE-EIT----KQSP 213 (404)
T ss_dssp ------------------------------------------------------CCBHHHHHHHTTEE-CCC----CEET
T ss_pred ------------------------------------------------------cccHHHHHHHhccc-cee----ecch
Confidence 02688999999874 443 8999
Q ss_pred cccccceEEEEEEeeeCCCeEEEEEeeeEeecc--cccccceeeeccCcccccccccccC--------------------
Q 003370 686 QCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRY--LKNKLDTFVNFPILNLDLSKYMKSK-------------------- 743 (825)
Q Consensus 686 ~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~~~--~~~Ki~~~V~FPl~~LDls~~~~~~-------------------- 743 (825)
+|++.+.|+|++.|++||+||+||||||.|+.. .+.|+++.|.||. .|||++|+...
T Consensus 214 ~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~-~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (404)
T 2ayn_A 214 TLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPL-MLDMYELCTPELQEKMVSFRSKFKDLEDKKV 292 (404)
T ss_dssp TTTEECCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCS-EEECGGGBCHHHHHHTTTTTGGGTCTTC---
T ss_pred hhCCccceeeeeeHhhCCCceEEEEEEEEEecccCceeccCceeccCc-eeEHhHhcChhhhhhcchhhhHHhhhhcccc
Confidence 999999999999999999999999999999864 5689999999996 89999998641
Q ss_pred -----------------------------CCCceEEEEEEEEEeec-CCCCCeEEEEEeeCCCCcEEEeCCCceeecCcC
Q 003370 744 -----------------------------DGESYVYDLFAISNHYG-GLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEG 793 (825)
Q Consensus 744 -----------------------------~~~~~~YdL~AVv~H~G-~l~gGHYtAy~k~~~~~~Wy~fnDs~V~~v~~~ 793 (825)
......|+|+|||+|.| ++++|||+||+|+ .+++||+|||+.|++++++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~-~~~~W~~fnD~~V~~v~~~ 371 (404)
T 2ayn_A 293 NQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKR-KQDEWIKFDDDKVSIVTPE 371 (404)
T ss_dssp -------------------CCCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEE-ETTEEEEEBTTBCCCBCHH
T ss_pred hhhhhhccccccccccccccccccccccCcCCCceEEEEEEEEecCCCCCCCCeEEEEEC-CCCeEEEeecccceecCHH
Confidence 11347899999999999 6999999999997 6899999999999999999
Q ss_pred cccCCC-------eEEEEEEEecCCch
Q 003370 794 DIKTSA-------AYVLFYRRVKSKTK 813 (825)
Q Consensus 794 ~v~s~~-------AYvLFY~R~~~~~~ 813 (825)
+|.... ||||||+|++.+..
T Consensus 372 ~v~~~~~g~~~~~aYiLfY~r~~~~~~ 398 (404)
T 2ayn_A 372 DILRLSGGGDWHIAYVLLYGPRRVEIM 398 (404)
T ss_dssp HHGGGGSSSSSCEEEEEEEECC-----
T ss_pred HHHhhhCCCCCceEEEEEEEecCCCCC
Confidence 998665 99999999987643
No 7
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=3.2e-62 Score=564.32 Aligned_cols=315 Identities=31% Similarity=0.625 Sum_probs=265.6
Q ss_pred CCCCcccceecCCCchhHHHHHHHHhCChHHHHHHHhc-CccccccCCCCCchhHHHHHHHHHHHHHhcCCC--------
Q 003370 212 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGR-------- 282 (825)
Q Consensus 212 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~-~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~-------- 282 (825)
...+|++||.|+||||||||+||||+|+|+|+++|+.. +....+..+ ...++.++|..++.+||....
T Consensus 136 ~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~---~~~~l~~~l~~l~~~l~~~~~~~~~~~~~ 212 (476)
T 3mhs_A 136 ERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRS---PDKCFSCALDKIVHELYGALNTKQASSSS 212 (476)
T ss_dssp GGTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCC---TTTCHHHHHHHHHHHHHSCCCC-------
T ss_pred cCCCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCCC---cccchHHHHHHHHHHHhhccccccccccc
Confidence 35789999999999999999999999999999999865 222222222 235688999999999997432
Q ss_pred -CccChHHHHHHH---hhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCChHHHHHHHHhhccccC
Q 003370 283 -AAVAPRAFKGKL---ARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARN 358 (825)
Q Consensus 283 -~~i~p~~~~~~l---~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~d~~~~~~~~~a~~~w~~~~~~~ 358 (825)
..+.|..++..+ .+..+.|.+++||||||||.+|||.||++++....+. .+.+.......
T Consensus 213 ~~~~~~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~----------------~~~~~~~~~~~ 276 (476)
T 3mhs_A 213 TSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNA----------------KEVSRANNKQC 276 (476)
T ss_dssp -CCCSCHHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC-----------------------CCCSC
T ss_pred ccccCcchHHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHHHHHHhhccccc----------------ccccccccccC
Confidence 256676666555 4889999999999999999999999999987654321 11122334456
Q ss_pred CCcccccceEEEEEEEEcCCCCCeee-eecCCeeEEEeCCCCceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHH
Q 003370 359 DSLIVDVFQGQYKSTLVCPVCSKVSI-TFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILAL 437 (825)
Q Consensus 359 ~SiI~~lF~G~~~s~i~C~~C~~~S~-~~e~F~~LsLpip~~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l 437 (825)
.++|.++|+|+++++++|..|+++|. ++|+|++|+|+||..
T Consensus 277 ~s~i~~~F~G~l~~~~~C~~C~~~s~~~~e~f~~LsL~i~~~-------------------------------------- 318 (476)
T 3mhs_A 277 ECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDK-------------------------------------- 318 (476)
T ss_dssp CSHHHHHSCEEEEEEEECTTTCCCCEEEEEEESCEEECCTTC--------------------------------------
T ss_pred CCcceeecceEEEEEEEECCCCCeeCCcccchhhhccchhhh--------------------------------------
Confidence 78999999999999999999999974 599999999998521
Q ss_pred HhhccCCcccceeEEEeecceeeEeecCcccccccccCCCcEEEEEeccCCCCceeEEEeeecccccccccccCCcceec
Q 003370 438 STACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLF 517 (825)
Q Consensus 438 ~~~~~~~~~~~l~~~e~~~~~~~k~~~d~~~~~~~i~~~d~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 517 (825)
T Consensus 319 -------------------------------------------------------------------------------- 318 (476)
T 3mhs_A 319 -------------------------------------------------------------------------------- 318 (476)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEEecCCCCCHHHHHHHHHHHccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeEEE
Q 003370 518 GAPLVTYLEEEHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLS 597 (825)
Q Consensus 518 g~P~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (825)
T Consensus 319 -------------------------------------------------------------------------------- 318 (476)
T 3mhs_A 319 -------------------------------------------------------------------------------- 318 (476)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCccCCCccCCCCCCCCceEEEEEecCccccccCccccccCccccccccccccccCCCCCHHHHHHhhcCCcccC
Q 003370 598 LTDERISSCKPIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLG 677 (825)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~ 677 (825)
.+|++||+.|+++|.|+
T Consensus 319 ---------------------------------------------------------------~sl~~~L~~~~~~E~l~ 335 (476)
T 3mhs_A 319 ---------------------------------------------------------------KKLYECLDSFHKKEQLK 335 (476)
T ss_dssp ---------------------------------------------------------------CBHHHHHHHHHCCEECS
T ss_pred ---------------------------------------------------------------hHHHHHHHHhcChhhcc
Confidence 27999999999999998
Q ss_pred CCCCCCCccccccceEEEEEEeeeCCCeEEEEEeeeEeec-ccccccceeeeccCcccccccccccCCC---------Cc
Q 003370 678 PDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSR-YLKNKLDTFVNFPILNLDLSKYMKSKDG---------ES 747 (825)
Q Consensus 678 ~~d~w~C~~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~~-~~~~Ki~~~V~FPl~~LDls~~~~~~~~---------~~ 747 (825)
+++ |+|++|++++.|+|++.|+++|+||+||||||.++. +...|+++.|.|| ..|||++|+..... ..
T Consensus 336 ~~~-~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~K~~~~V~fP-~~Ldl~~~~~~~~~~~~~~~~~~~~ 413 (476)
T 3mhs_A 336 DFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFP-TYLNMKNYCSTKEKDKHSENGKVPD 413 (476)
T ss_dssp SCC-CEETTTTEECCCEEEEEEEEBCSEEEEEECCEEECTTSCEEECCCCCBCC-SEEECGGGBSCCBCCC--CCCBCCC
T ss_pred CCC-CcCCccCCcccEEEEEEcccCCcceEEEeeeccccCCCCeEECCEEEcCC-CeeechhhcCcccccccccccCCCC
Confidence 655 999999999999999999999999999999999874 4578999999999 48999999976432 45
Q ss_pred eEEEEEEEEEeecCCCCCeEEEEEeeCCCCcEEEeCCCceeecCcCcccCCCeEEEEEEEec
Q 003370 748 YVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRVK 809 (825)
Q Consensus 748 ~~YdL~AVv~H~G~l~gGHYtAy~k~~~~~~Wy~fnDs~V~~v~~~~v~s~~AYvLFY~R~~ 809 (825)
..|+|+|||+|.|++++|||+||+|. .+++||.|||+.|+++++++|.++.||||||+|++
T Consensus 414 ~~Y~L~avv~H~G~~~~GHY~a~vr~-~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~ 474 (476)
T 3mhs_A 414 IIYELIGIVSHKGTVNEGHYIAFCKI-SGGQWFKFNDSMVSSISQEEVLKEQAYLLFYTIRQ 474 (476)
T ss_dssp EEEEEEEEEEEEECSSSEEEEEEEEC-TTSCEEEEETTEEEEECHHHHTTSCEEEEEEEEEE
T ss_pred CcEEEEEEEEeCCCCCCCceEEEEEC-CCCcEEEEeCCceEECCHHHhccCCcEEEEEEEec
Confidence 78999999999999999999999986 68899999999999999999999999999999986
No 8
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=2.9e-61 Score=546.74 Aligned_cols=297 Identities=25% Similarity=0.382 Sum_probs=250.4
Q ss_pred CCCCcccceecCCCchhHHHHHHHHhCChHHHHHHHhcCccccccCCCCC----chhHHHHHHHHHHHHHhcCCCCccCh
Q 003370 212 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLG----MHGELALAFGDLLRKLWSSGRAAVAP 287 (825)
Q Consensus 212 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~----~~~~l~~~l~~L~~~l~~~~~~~i~p 287 (825)
....+++||.|+||||||||+||||+|+|+||++|+.... ..+..++.+ ...+++.+|+.||..||.+...+++|
T Consensus 19 ~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~-~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p 97 (415)
T 1vjv_A 19 QFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNP-SQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLP 97 (415)
T ss_dssp CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCG-GGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECC
T ss_pred ccCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhccc-ccccCCcccccccchhHHHHHHHHHHHHHhcCCCCccCH
Confidence 4567899999999999999999999999999999987522 122222211 25689999999999999988899999
Q ss_pred HHHHHHHhhhCCCCC-------CCCCCCHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCChHHHHHHHHhhccccCCC
Q 003370 288 RAFKGKLARFAPQFS-------GYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDS 360 (825)
Q Consensus 288 ~~~~~~l~~~~~~F~-------~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~d~~~~~~~~~a~~~w~~~~~~~~S 360 (825)
..|+.+++...|.|. ++.||||||||.+|||.||++++. +
T Consensus 98 ~~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~---------------------------------~ 144 (415)
T 1vjv_A 98 VVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD---------------------------------K 144 (415)
T ss_dssp HHHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH---------------------------------H
T ss_pred HHHHHHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc---------------------------------c
Confidence 999999999999998 899999999999999999999842 4
Q ss_pred cccccceEEEEEEEEcCCCCCee--eeecCCeeEEEeCCCCceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHH
Q 003370 361 LIVDVFQGQYKSTLVCPVCSKVS--ITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALS 438 (825)
Q Consensus 361 iI~~lF~G~~~s~i~C~~C~~~S--~~~e~F~~LsLpip~~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~ 438 (825)
+|.++|+ +++++++|..|++.+ .++|+|++|+|+||..
T Consensus 145 ~i~~~F~-~~~~~~~C~~C~~~s~s~~~e~f~~Lsl~i~~~--------------------------------------- 184 (415)
T 1vjv_A 145 FSEDFRI-QFKTTIKDTANDNDITVKENESDSKLQCHISGT--------------------------------------- 184 (415)
T ss_dssp HHTTTCE-EEEEEEEETTEEEEEEEECCCEESCEEECCCTT---------------------------------------
T ss_pred hHHHHHH-hheEEEEECCCCCCccccccccceeeeeccccc---------------------------------------
Confidence 6899999 999999999999997 5899999999998621
Q ss_pred hhccCCcccceeEEEeecceeeEeecCcccccccccCCCcEEEEEeccCCCCceeEEEeeecccccccccccCCcceecc
Q 003370 439 TACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFG 518 (825)
Q Consensus 439 ~~~~~~~~~~l~~~e~~~~~~~k~~~d~~~~~~~i~~~d~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg 518 (825)
T Consensus 185 -------------------------------------------------------------------------------- 184 (415)
T 1vjv_A 185 -------------------------------------------------------------------------------- 184 (415)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEEecCCCCCHHHHHHHHHHHccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeEEEE
Q 003370 519 APLVTYLEEEHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSL 598 (825)
Q Consensus 519 ~P~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (825)
T Consensus 185 -------------------------------------------------------------------------------- 184 (415)
T 1vjv_A 185 -------------------------------------------------------------------------------- 184 (415)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCccCCCccCCCCCCCCceEEEEEecCccccccCccccccCccccccccccccccCCCCCHHHHHHhhcCCcccCC
Q 003370 599 TDERISSCKPIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGP 678 (825)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~ 678 (825)
..+|.+||+.|+.+| +.
T Consensus 185 -------------------------------------------------------------~~~l~~~L~~~~~e~-i~- 201 (415)
T 1vjv_A 185 -------------------------------------------------------------TNFMRNGLLEGLNEK-IE- 201 (415)
T ss_dssp -------------------------------------------------------------CCBHHHHHHHHHEEC----
T ss_pred -------------------------------------------------------------cchHHHHHHHHhhhh-hh-
Confidence 016899999999754 42
Q ss_pred CCCCCCccccccceEEEEEEeeeCCCeEEEEEeeeEeecc--cccccceeeeccCcccccccccccC-------------
Q 003370 679 DDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRY--LKNKLDTFVNFPILNLDLSKYMKSK------------- 743 (825)
Q Consensus 679 ~d~w~C~~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~~~--~~~Ki~~~V~FPl~~LDls~~~~~~------------- 743 (825)
|+|+.|++.+.|+|++.|+++|+||+||||||.|+.. .+.|+++.|.||. .|||++|+...
T Consensus 202 ---~~c~~c~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V~FP~-~Ldl~~~~~~~~~~~~~~~r~~~~ 277 (415)
T 1vjv_A 202 ---KRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPF-QLDVADMLTPEYAAEKVKVRDELR 277 (415)
T ss_dssp ----------CCCCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCCS-EEECGGGBCHHHHHHHHHHHHHHH
T ss_pred ---hcccccCCcccEEEEEEcccCCCeeEEEEEEEEEeCCCCcchhhcCccCCCc-EeEhHHhcChhhhhhhhhhHHHHH
Confidence 8999999999999999999999999999999999864 5689999999995 89999998631
Q ss_pred --------------------------------------------------------------CCCceEEEEEEEEEeec-
Q 003370 744 --------------------------------------------------------------DGESYVYDLFAISNHYG- 760 (825)
Q Consensus 744 --------------------------------------------------------------~~~~~~YdL~AVv~H~G- 760 (825)
......|+|+|||+|.|
T Consensus 278 ~~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~ 357 (415)
T 1vjv_A 278 KVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGA 357 (415)
T ss_dssp HHHHHHHHC----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEEEEESS
T ss_pred HHhhhhhhhhhhhhhccccccccccccccchhhhhchhhHHhhhhhhhhhcccccccccccccCCCceEEEEEEEEecCC
Confidence 01347899999999999
Q ss_pred CCCCCeEEEEEee-CCCCcEEEeCCCceeecCcCcccCCC-------eEEEEEEEec
Q 003370 761 GLGGGHYTAYAKL-IDENRWYHFDDSHVSPVSEGDIKTSA-------AYVLFYRRVK 809 (825)
Q Consensus 761 ~l~gGHYtAy~k~-~~~~~Wy~fnDs~V~~v~~~~v~s~~-------AYvLFY~R~~ 809 (825)
++++|||+||+|+ ..+++||+|||+.|+++++++|.... ||||||+|++
T Consensus 358 s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~~ 414 (415)
T 1vjv_A 358 NSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMYKGFG 414 (415)
T ss_dssp STTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGCCTTSCEEEEEEEEETT
T ss_pred CCCCCCEEEEEeCCCCCCcEEEeECCcCeEcCHHHHhhhcCCCCcceEEEEEEEecC
Confidence 7999999999997 67999999999999999999997765 9999999985
No 9
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=6.1e-61 Score=559.17 Aligned_cols=298 Identities=26% Similarity=0.420 Sum_probs=257.7
Q ss_pred CCCcccceecCCCchhHHHHHHHHhCChHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHH
Q 003370 213 EKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKG 292 (825)
Q Consensus 213 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~ 292 (825)
..+|++||.|+||||||||+||||+|+|+||++++..-.. .......+..+|+.||..|+.+. .++.|..|+.
T Consensus 171 ~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~------~~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~l~~ 243 (522)
T 2f1z_A 171 KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE------GDDSSKSVPLALQRVFYELQHSD-KPVGTKKLTK 243 (522)
T ss_dssp TTTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCC------SSCTTTCHHHHHHHHHHHHHHCS-SCBCCTTHHH
T ss_pred ccCCccceecCcccHHHHHHHHHHhccHHHHHHHhhcccc------CCcccchHHHHHHHHHHHHhcCC-CccCcHHHHh
Confidence 4689999999999999999999999999999999754111 01123468899999999999864 5788998887
Q ss_pred HHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCChHHHHHHHHhhccccCCCcccccceEEEEE
Q 003370 293 KLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKS 372 (825)
Q Consensus 293 ~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~d~~~~~~~~~a~~~w~~~~~~~~SiI~~lF~G~~~s 372 (825)
.++ .+.|.+++||||||||.+|||.||++++.. ...++|.++|+|++++
T Consensus 244 ~~~--~~~~~~~~QqDa~Efl~~LLd~L~~~l~~~-----------------------------~~~s~i~~lF~G~~~s 292 (522)
T 2f1z_A 244 SFG--WETLDSFMQHDVQELCRVLLDNVENKMKGT-----------------------------CVEGTIPKLFRGKMVS 292 (522)
T ss_dssp HTC--CCTTTSSTTSCHHHHHHHHHHHHHHHHTTS-----------------------------TTTTHHHHHHCEEEEE
T ss_pred hcC--CccCCCcccccHHHHHHHHHHHHHhhccCC-----------------------------ccccchhhheeEEEEE
Confidence 765 378999999999999999999999988531 1246799999999999
Q ss_pred EEEcCCCCCeeeeecCCeeEEEeCCCCceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeEE
Q 003370 373 TLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLA 452 (825)
Q Consensus 373 ~i~C~~C~~~S~~~e~F~~LsLpip~~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~ 452 (825)
+++|..|++.|.++|+|++|+|+||..
T Consensus 293 ~i~C~~C~~~s~~~e~f~~LsL~i~~~----------------------------------------------------- 319 (522)
T 2f1z_A 293 YIQCKEVDYRSDRREDYYDIQLSIKGK----------------------------------------------------- 319 (522)
T ss_dssp EECCSSSCCCCCEEEEESCEEECCTTC-----------------------------------------------------
T ss_pred EEEcCCCCceeeeeeeeEEEEEEeCCc-----------------------------------------------------
Confidence 999999999999999999999998621
Q ss_pred EeecceeeEeecCcccccccccCCCcEEEEEeccCCCCceeEEEeeecccccccccccCCcceeccccEEEEecCCCCCH
Q 003370 453 EVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSG 532 (825)
Q Consensus 453 e~~~~~~~k~~~d~~~~~~~i~~~d~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~ 532 (825)
T Consensus 320 -------------------------------------------------------------------------------- 319 (522)
T 2f1z_A 320 -------------------------------------------------------------------------------- 319 (522)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeEEEEecCCCCccCCCccC
Q 003370 533 ADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKD 612 (825)
Q Consensus 533 ~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (825)
T Consensus 320 -------------------------------------------------------------------------------- 319 (522)
T 2f1z_A 320 -------------------------------------------------------------------------------- 319 (522)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCceEEEEEecCccccccCccccccCccccccccccccccCCCCCHHHHHHhhcCCcccCCCCCCCCccccccce
Q 003370 613 SILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQ 692 (825)
Q Consensus 613 ~~~~~~~~~~i~i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~f~~~E~L~~~d~w~C~~Ck~~~~ 692 (825)
.+|.+||+.|+.+|.|+++++|+|+.|+ ++.
T Consensus 320 ------------------------------------------------~~l~~~L~~~~~~E~l~~~n~~~C~~c~-~~~ 350 (522)
T 2f1z_A 320 ------------------------------------------------KNIFESFVDYVAVEQLDGDNKYDAGEHG-LQE 350 (522)
T ss_dssp ------------------------------------------------CBHHHHHHHHTCEEEECTTSCBCCGGGC-SBC
T ss_pred ------------------------------------------------ccchHHHHHhhceeecCCcceeecCcCC-ccc
Confidence 1588999999999999999999999996 688
Q ss_pred EEEEEEeeeCCCeEEEEEeeeEeec--ccccccceeeeccCcccccccccccCC-CCceEEEEEEEEEeecCCCCCeEEE
Q 003370 693 ATKKLDLWMLPDVLVFHLKRFSYSR--YLKNKLDTFVNFPILNLDLSKYMKSKD-GESYVYDLFAISNHYGGLGGGHYTA 769 (825)
Q Consensus 693 A~Kk~~i~~lP~iLiIhLKRF~~~~--~~~~Ki~~~V~FPl~~LDls~~~~~~~-~~~~~YdL~AVv~H~G~l~gGHYtA 769 (825)
|+|++.|++||+||+||||||.|+. ....|+++.|+||. .|||++|+...+ ..+..|+|+|||+|+|++++|||+|
T Consensus 351 a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp~-~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a 429 (522)
T 2f1z_A 351 AEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPE-QLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVV 429 (522)
T ss_dssp EEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCCS-EEECGGGBSSCCTTSCCEEEEEEEEEEECSSSCSEEEE
T ss_pred eEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEEeCCC-eecchhhhccccCCCCcEEEEEEEEEecccCCCceEEE
Confidence 9999999999999999999999985 45789999999995 899999998643 2457899999999999999999999
Q ss_pred EEeeCCCCcEEEeCCCceeecCcCcccC---------------CCeEEEEEEEecCC
Q 003370 770 YAKLIDENRWYHFDDSHVSPVSEGDIKT---------------SAAYVLFYRRVKSK 811 (825)
Q Consensus 770 y~k~~~~~~Wy~fnDs~V~~v~~~~v~s---------------~~AYvLFY~R~~~~ 811 (825)
|+|+..+++||+|||+.|+++++++|.. .+||||||+|++..
T Consensus 430 ~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~aYiLfY~r~~~~ 486 (522)
T 2f1z_A 430 YLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESKL 486 (522)
T ss_dssp EECTTSSSCCEEEETTEEEECCHHHHSTTSSCCC--------CEEEEEEEEEETTSH
T ss_pred EEecCCCCCEEEEECceeEECCHHHHHHhhcCCCccccccCcCCceEEEEEEECCch
Confidence 9997778999999999999999888753 67999999999864
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.4e-59 Score=563.94 Aligned_cols=156 Identities=26% Similarity=0.426 Sum_probs=135.2
Q ss_pred cCCCCcccceecCCCchhHHHHHHHHhCChHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHHHhcCC---------
Q 003370 211 KGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSG--------- 281 (825)
Q Consensus 211 ~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~--------- 281 (825)
+...+|++||.|+||||||||+||||+|+|+||++|+.... .....++.....++.++|+.|+..||++.
T Consensus 338 p~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~-~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~ 416 (854)
T 3ihp_A 338 PLFGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLE-KIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESG 416 (854)
T ss_dssp CCCSTTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHH-HHHHHCCSCGGGCHHHHHHHHHHHHHSCC---------
T ss_pred cccCCCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhh-hhhccccCCccccHHHHHHHHHHHHhcccccccccccc
Confidence 34578999999999999999999999999999999985421 11112344566789999999999999743
Q ss_pred -----------CCccChHHHHHHHhhhCCCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCChHHHHHHH
Q 003370 282 -----------RAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANEC 350 (825)
Q Consensus 282 -----------~~~i~p~~~~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~d~~~~~~~~~a~~~ 350 (825)
...++|..|+.+++..++.|.+++||||||||.+|||.||++++.
T Consensus 417 ~~~~~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~el~~------------------------ 472 (854)
T 3ihp_A 417 DGERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCRS------------------------ 472 (854)
T ss_dssp ------------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHTCTT------------------------
T ss_pred ccccccccccCCCccChHHHHHHHhhhccccccccccCHHHHHHHHHHHHHHHhcc------------------------
Confidence 448999999999999999999999999999999999999998732
Q ss_pred HhhccccCCCcccccceEEEEEEEEcCCCCCeeeeecCCeeEEEeCCCC
Q 003370 351 WKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPST 399 (825)
Q Consensus 351 w~~~~~~~~SiI~~lF~G~~~s~i~C~~C~~~S~~~e~F~~LsLpip~~ 399 (825)
.++|.++|+|+++++++|..|++++.++++|++|+|+||..
T Consensus 473 --------~s~i~~lF~G~l~s~i~C~~C~~vs~t~e~F~~LsL~Ip~~ 513 (854)
T 3ihp_A 473 --------SENPNEVFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMD 513 (854)
T ss_dssp --------SCCGGGGTCEEEEEEEEETTTTEEEEEEEEESEEEECCCGG
T ss_pred --------cCCchhhcCceEEEEEEecCCCCEeEEeeeceEEEeeCCcc
Confidence 24689999999999999999999999999999999999853
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.94 E-value=1.2e-26 Score=249.49 Aligned_cols=99 Identities=19% Similarity=0.262 Sum_probs=80.3
Q ss_pred cccceecCCCchhHHHHHHHHhCChHHHHHHHhcCccccccCCCCCchhHHHHHH-HHHHHHHhcCCCCccChHHHHHHH
Q 003370 216 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAF-GDLLRKLWSSGRAAVAPRAFKGKL 294 (825)
Q Consensus 216 g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l-~~L~~~l~~~~~~~i~p~~~~~~l 294 (825)
-++||.|+||||||||.||||+.+|++.+.++.. ....+. ......+..+| .+++..|.. ..+.|..|...|
T Consensus 8 ~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~-~~~~~~---~~~~~~l~~~L~r~i~~~Lrk---~~~~P~~~l~~L 80 (374)
T 2vhf_A 8 KKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLR-PKEKND---VEYYSETQELLRTEIVNPLRI---YGYVCATKIMKL 80 (374)
T ss_dssp ESCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHC-CCCTTS---CTTHHHHHHHHHHTTHHHHHH---TSEECHHHHHHH
T ss_pred CCccccCCCcCcHHHHHHHHHHhchHHHHHHHhC-CCCCCc---chhHHHHHHHHHHHHHHHHhh---cCCCcHHHHHHH
Confidence 4799999999999999999999999999999864 221111 22334688888 899999976 789999999999
Q ss_pred hhhCCCCC-----CCCCCCHHHHHHHHHHHHH
Q 003370 295 ARFAPQFS-----GYNQHDSQELLAFLLDGLH 321 (825)
Q Consensus 295 ~~~~~~F~-----~~~QqDA~Efl~~LLd~L~ 321 (825)
++..|+|. +++||||.||+..||..|.
T Consensus 81 R~~~pQfae~~G~~~~QQDaEE~~t~Ll~~L~ 112 (374)
T 2vhf_A 81 RKILEKVEAASGFTSEEKDPEEFLNILFHHIL 112 (374)
T ss_dssp HHHHHHHC--------CCCHHHHHHHHHTTTT
T ss_pred HHHhHHHhcccCCCccccCHHHHHHHHHHHHh
Confidence 98888776 3899999999999999886
No 12
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=99.89 E-value=1e-23 Score=216.31 Aligned_cols=126 Identities=25% Similarity=0.456 Sum_probs=114.7
Q ss_pred EEEEehHHHHHHHHhccCceeeeeccCCCccccccCCCeeeeEeecCCCCceeEEEcccceEEeeccCCC-ceEEEeCcc
Q 003370 3 MVVVKAMIWKCVEIWKKGRTMFWYLSKSGKSFFVGGPALPRKMISEGIVNEKRVEVFXLCLKLIDSRDNS-QTVIRLSKK 81 (825)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~y~ggp~I~R~Vi~~~~~~~~~VEvyP~~l~l~~~~~~~-~~~~~~Sk~ 81 (825)
|++||+++|++| ++|||+. +|||+|+|+||..+.. ..||+||+.|+|+.+++.. ..++.|||.
T Consensus 86 y~~vp~~vW~~l--------~~wYG~~------~ggp~I~R~vi~~~~~--~~vEvyP~~l~l~~~~~~~~~~~~~~Sk~ 149 (217)
T 4a3p_A 86 YILLPTEGWNKL--------VSWYTLM------EGQEPIARKVVEQGMF--CKVEVYLTELKLCENGNMNNVVTRRFSKA 149 (217)
T ss_dssp EEEEEHHHHHHH--------HHHHCBC------TTCCCCEEEEEEETTE--EEECCSCEEEEEEETTEEEEEEEEEECTT
T ss_pred EEEECHHHHHHH--------HHHhCCC------CCCCCcceeEEecCCe--eEEEEeccEEEEEecCCCCcceEEEEccc
Confidence 799999999999 9999999 9999999999999863 7999999999999887653 457899999
Q ss_pred ccHHHHHHHHHHHhCCCCc-ceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEe-cCce
Q 003370 82 ASTRQLYEKVCKLRGIEQE-KARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV-DNGI 145 (825)
Q Consensus 82 ~ti~~L~~~v~~~~~~~~~-~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~-~~~~ 145 (825)
+|+++|+++||++|+++.+ ++|||++++.++. ++|.+.++||++++|+++|.||+|+++ ||+|
T Consensus 150 ~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~-~~L~~~~~tl~~~~l~~~Q~illE~r~~dg~W 214 (217)
T 4a3p_A 150 DTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTF-EPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTW 214 (217)
T ss_dssp SBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEE-EECCCTTSBHHHHTCCTTCEEEEEECCCC-CC
T ss_pred chHHHHHHHHHHHhCCCCCCceEEEEecCCCCe-eecCCCCCCHHHhCCCCCCEEEEEEecCCCCC
Confidence 9999999999999999987 7999999988888 899889999999999999999999995 5544
No 13
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=99.89 E-value=1.7e-23 Score=216.69 Aligned_cols=128 Identities=28% Similarity=0.456 Sum_probs=115.1
Q ss_pred EEEEehHHHHHHHHhccCceeeeeccCCCccccccCCCeeeeEeecCCCCce-eEEEcccceEEeeccCCCc-eEEEeCc
Q 003370 3 MVVVKAMIWKCVEIWKKGRTMFWYLSKSGKSFFVGGPALPRKMISEGIVNEK-RVEVFXLCLKLIDSRDNSQ-TVIRLSK 80 (825)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~y~ggp~I~R~Vi~~~~~~~~-~VEvyP~~l~l~~~~~~~~-~~~~~Sk 80 (825)
|++||+++|++| ++|||+. .|||+|+|+||..+..... .||+||+.|+|+.+++... .++.|||
T Consensus 95 y~~vp~~vW~~l--------~~wYG~~------~gg~~I~R~vi~~~~~~~~~~vEvyP~~l~l~~~~~~~~~~~~~~Sk 160 (231)
T 3jyu_A 95 YVLVPAEAWNKL--------LNWYGCV------EGQQPIVRKVVEHGLFVKHCKVEVYLLELKLCENSDPTNVLSCHFSK 160 (231)
T ss_dssp EEEEEHHHHHHH--------HHHHCBC------TTCCCCEEEEEEECSSSCEEEECCSCEEEEEEETTEEEEEEEEEECT
T ss_pred EEEECHHHHHHH--------HHHhCCC------CCCCceEEEEeccCCCCCcceEEEecceEEEEecCCCCceEEEEecc
Confidence 799999999999 9999999 8999999999998854444 8999999999999876543 4688999
Q ss_pred cccHHHHHHHHHHHhCCCCc-ceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEe-cCce
Q 003370 81 KASTRQLYEKVCKLRGIEQE-KARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV-DNGI 145 (825)
Q Consensus 81 ~~ti~~L~~~v~~~~~~~~~-~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~-~~~~ 145 (825)
.+|+++|+++||++|+|+.+ ++|||++++.++. ++|.+.++||++++|+++|.||+|+++ ||+|
T Consensus 161 ~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~-~~L~~~~~tl~d~~L~~~Q~illE~r~~dg~W 226 (231)
T 3jyu_A 161 ADTIATIEKEMRKLFNIPAERETRLWNKYMSNTY-EQLSKLDNTIQDAGLYQGQVLVIEPQNEDGTW 226 (231)
T ss_dssp TCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSC-EECCCTTSBTTTTTCCTTEEEEEEECCTTSCC
T ss_pred cCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCH-hhhcCCCCCHHHhCCCCCCEEEEEEecCCCCC
Confidence 99999999999999999987 7999999999888 889889999999999999999999995 4444
No 14
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=99.40 E-value=8.6e-12 Score=143.92 Aligned_cols=296 Identities=17% Similarity=0.204 Sum_probs=208.0
Q ss_pred EEEeCccccHHHHHHHHHHHhCCCCc-ceEEEEeccCcccccCccCccCCHHHH--hccCCCeEEEEEEecCceeccCCC
Q 003370 75 VIRLSKKASTRQLYEKVCKLRGIEQE-KARIWDYFNKQRSTSPLDVSDQTLDDA--MLQMDQDILLEVQVDNGISMDSTG 151 (825)
Q Consensus 75 ~~~~Sk~~ti~~L~~~v~~~~~~~~~-~~rlw~~~~~~~~~~~l~~~~~tl~~~--~~~~~~~~~~E~~~~~~~~~~~~~ 151 (825)
.+.+++.+++.+|...+++.++++++ +++||.-...+.. +.|++.+.|++++ +|++|+.|++|......
T Consensus 150 ~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~i-e~l~~~~~t~~~~~~eL~~GdII~fQ~~~~~~------- 221 (530)
T 2ylm_A 150 HIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLT-ERIQDYDVSLDKALDELMDGDIIVFQKDDPEN------- 221 (530)
T ss_dssp EEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEE-EECCCSSSBHHHHSTTCCTTEEEEEEECCGGG-------
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCce-eEcccccccHHHHHhcccCCCEEEEEecCCcc-------
Confidence 46789999999999999999999987 7999986655555 6777688899999 99999999999643210
Q ss_pred CCCcccccCCCCCcccccCCCCCCCCCCCCcccCCCCCCCCCCCcCCCCCCCCCccccccCCCCcccceecCCCchhHHH
Q 003370 152 NDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGSTFMDMDDGYDSYNTAKKGEKGGLAGLQNLGNTCFMNS 231 (825)
Q Consensus 152 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCYmNS 231 (825)
..+.+.
T Consensus 222 ----------~~~~y~---------------------------------------------------------------- 227 (530)
T 2ylm_A 222 ----------DNSELP---------------------------------------------------------------- 227 (530)
T ss_dssp ----------GGSSSC----------------------------------------------------------------
T ss_pred ----------ccccCC----------------------------------------------------------------
Confidence 000000
Q ss_pred HHHHHhCChHHHHHHHhc---------------CccccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHHHHhh
Q 003370 232 ALQCLVHTPDLAQYFLGD---------------YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLAR 296 (825)
Q Consensus 232 vLQ~L~~~p~f~~~~l~~---------------~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l~~ 296 (825)
.++.+-+++.+. +.-.++... .-++++.+.+..+.. .|..+ +
T Consensus 228 ------~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~---~Y~~la~~va~~l~~---------dP~~l-----R 284 (530)
T 2ylm_A 228 ------TAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRM---NYFQVAKTVAQRLNT---------DPMLL-----Q 284 (530)
T ss_dssp ------SHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTC---CHHHHHHHHHHHHTS---------CGGGE-----E
T ss_pred ------CHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCC---CHHHHHHHHHHHhCC---------CchhE-----E
Confidence 000111111111 222222222 236777777766632 35432 3
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCCcccccCCCCCChHHHHHHHHhhccccCCCcccccceEEEEEEEEc
Q 003370 297 FAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVC 376 (825)
Q Consensus 297 ~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~d~~~~~~~~~a~~~w~~~~~~~~SiI~~lF~G~~~s~i~C 376 (825)
+.+. .+|.|+ |.. ....+.++.+.++|. .
T Consensus 285 f~~~-~~~~~~-----------------------p~~-------------------~i~~~~~~~L~d~l~--------~ 313 (530)
T 2ylm_A 285 FFKS-QGYRDG-----------------------PGN-------------------PLRHNYEGTLRDLLQ--------F 313 (530)
T ss_dssp EECC-CTTSCS-----------------------CCS-------------------BCCTTCCSCHHHHST--------T
T ss_pred EEec-ccccCC-----------------------CCC-------------------ccccCCCCcHHHHhh--------c
Confidence 3333 344331 100 012234466778772 2
Q ss_pred CCCCCeeeeecCCeeEEEeCCCC---ceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCc--ccceeE
Q 003370 377 PVCSKVSITFDPFMYLTLPLPST---VTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKI--DEGLLL 451 (825)
Q Consensus 377 ~~C~~~S~~~e~F~~LsLpip~~---~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~--~~~l~~ 451 (825)
+.|+ +.++|++..|+||.. +.+.+.|+++ +....+.++.+.+||++++.||++++++.+++++ ..+|.+
T Consensus 314 ~~~~----~~~~l~YevL~ipl~ElE~~r~~kv~w~--~~~~~~~~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl 387 (530)
T 2ylm_A 314 FKPR----QPKKLYYQQLKMKITDFENRRSFKCIWL--NSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRL 387 (530)
T ss_dssp SCSS----SCCEEEEEECSSCHHHHHSBCCEEEEEE--CTTSCEEEEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEE
T ss_pred ccCC----CCCeEEEEECCCCHHHHhhCceEEEEEE--CCCCceEEEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEE
Confidence 3454 468999999999998 8889999888 3344466999999999999999999999999864 678999
Q ss_pred EEeecceeeEeecCcccccccccC--CCcEEEEEeccC-----CCCceeEEEeeecccccccccccCCcceeccccEEEE
Q 003370 452 AEVYNHQIFRFFENPAELISSIKD--DEHIVAYRFDRK-----QGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTY 524 (825)
Q Consensus 452 ~e~~~~~~~k~~~d~~~~~~~i~~--~d~i~~y~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~ 524 (825)
.|+++|+|++++. .+..++.|.+ ...+.++++|.. .++...++++|...+. ...||.||++.
T Consensus 388 ~ev~~~ki~ki~~-~~~~i~~i~d~~~~~~rieeip~ee~~~~~~~~~li~V~hf~k~~----------~~~~G~PF~~~ 456 (530)
T 2ylm_A 388 LEIVSYKIIGVHQ-EDELLECLSPATSRTFRIEEIPLDQVDIDKENEMLVTVAHFHKEV----------FGTFGIPFLLR 456 (530)
T ss_dssp EEEETTEEEEEEC-TTSBGGGSCCCTTCEEEEEECCGGGSSCCTTTEEEEEEEEESSST----------TCEEEEEEEEE
T ss_pred EEEECCEEEEecC-CCcccccccccccceEEEEECCHHHhccCCCCcEEEEEEEeccCc----------ccccCCCeEEE
Confidence 9999999999999 4557888888 899999999986 4445668888885322 24699999999
Q ss_pred ecCCCCCHHHHHHHHHHHcc
Q 003370 525 LEEEHLSGADIDIAVSKLLS 544 (825)
Q Consensus 525 ~~~~~~~~~~l~~~v~~~~~ 544 (825)
+.. ..+..++++.+.+++.
T Consensus 457 v~~-gEt~~~~k~Rl~~rlg 475 (530)
T 2ylm_A 457 IHQ-GEHFREVMKRIQSLLD 475 (530)
T ss_dssp EET-TCCHHHHHHHHHHHHC
T ss_pred ecC-CCcHHHHHHHHHHHhC
Confidence 974 3489999999988874
No 15
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=95.64 E-value=0.064 Score=46.99 Aligned_cols=64 Identities=14% Similarity=0.075 Sum_probs=51.2
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCc-ccccCccCccCCHHHHhccCCCeEEE
Q 003370 73 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQ-RSTSPLDVSDQTLDDAMLQMDQDILL 137 (825)
Q Consensus 73 ~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~-~~~~~l~~~~~tl~~~~~~~~~~~~~ 137 (825)
...+.+...+||.+|++++....+++++.-||.. .+.+ +....|.+.++||.+++++.+..|.+
T Consensus 28 ~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~-~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihl 92 (97)
T 2kj6_A 28 SADARFSPQMSVEAVKEKLWKKCGTSVNSMALEL-YDDSGSKVAVLSDDSRPLGFFSPFDGFRLHI 92 (97)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEE-ECSSSCBCCCSSGGGSCHHHHCCCSCCEEEE
T ss_pred EEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEE-ecCCCcccceecCCcCCHHHCCCCCCCEEEE
Confidence 4678999999999999999999999999999984 3321 11124556788999999999987755
No 16
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=95.46 E-value=0.03 Score=47.93 Aligned_cols=64 Identities=11% Similarity=-0.026 Sum_probs=51.8
Q ss_pred eEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEE
Q 003370 74 TVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 137 (825)
Q Consensus 74 ~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~ 137 (825)
..++|+..+||.+|++++....++++++-||.-+.........+.+.++||.+++++.|..|-|
T Consensus 17 ~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihl 80 (86)
T 4b6w_A 17 PEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHV 80 (86)
T ss_dssp EEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEE
T ss_pred EEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEE
Confidence 4688999999999999999999999999999955443332234456789999999999988743
No 17
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=95.31 E-value=0.079 Score=46.05 Aligned_cols=64 Identities=11% Similarity=0.197 Sum_probs=52.6
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEec
Q 003370 73 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVD 142 (825)
Q Consensus 73 ~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~~ 142 (825)
...+.++..+||.+|++++....++++++.||. |.+ ..|.+.++||.++++..+..|.+-++..
T Consensus 26 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~G-----k~L~D~~~tL~~ygI~~gstl~lv~r~~ 89 (94)
T 2kan_A 26 QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLY-YSG-----IELADDYRNLNEYGITEFSEIVVFLKSI 89 (94)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEE-ETT-----EEECCTTSBHHHHTCCTTEEEEEEECCC
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEE-ECC-----EECCCCcccHHHCCCCCCCEEEEEEeCC
Confidence 457889999999999999999999999999997 332 4565433899999999998888877653
No 18
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=95.23 E-value=0.066 Score=46.70 Aligned_cols=65 Identities=17% Similarity=0.105 Sum_probs=51.1
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEE
Q 003370 73 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 138 (825)
Q Consensus 73 ~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E 138 (825)
..++.+...+||.+|++++....++++++-||....+.... ..|.+.++||.+++++.+..|.+.
T Consensus 29 ~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~-~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 29 AFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCV-STMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEE-EECCCTTSBHHHHCCSSSCEEEEE
T ss_pred EEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCccc-ceeCCCCCCHhHCCcCCCCEEEEE
Confidence 45788999999999999999999999999999853311111 235457889999999999877653
No 19
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.09 E-value=0.058 Score=47.11 Aligned_cols=67 Identities=10% Similarity=0.008 Sum_probs=54.8
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcc-cccCccCccCCHHHHhccCCCeEEEEE
Q 003370 73 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQR-STSPLDVSDQTLDDAMLQMDQDILLEV 139 (825)
Q Consensus 73 ~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~-~~~~l~~~~~tl~~~~~~~~~~~~~E~ 139 (825)
.....|....||.+|+.++.+++++++...||.-+..... ....|.+.+++|..+++.+|..|.++.
T Consensus 24 ~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~d 91 (97)
T 1wjn_A 24 ILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVRW 91 (97)
T ss_dssp CEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEEe
Confidence 4567899999999999999999999999999985432211 213477889999999999999998874
No 20
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=94.99 E-value=0.086 Score=43.18 Aligned_cols=65 Identities=15% Similarity=0.270 Sum_probs=52.8
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEec
Q 003370 71 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVD 142 (825)
Q Consensus 71 ~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~~ 142 (825)
.....+.++..+||.+|++++.+..+++++..||.. . . ..|. .+.||.++++.++..|.+-++..
T Consensus 10 g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~-~----g-~~L~-d~~tL~~~~i~~g~~i~l~~~~~ 74 (76)
T 3a9j_A 10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-A----G-KQLE-DGRTLSDYNIQRESTLHLVLRLR 74 (76)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE-T----T-EECC-TTCBTGGGTCCTTCEEEEEECCC
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE-C----C-eECC-CCCcHHHcCCCCCCEEEEEEeCC
Confidence 344578899999999999999999999999999873 2 2 3454 47899999999999888877653
No 21
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=94.83 E-value=0.11 Score=43.98 Aligned_cols=65 Identities=9% Similarity=0.108 Sum_probs=52.8
Q ss_pred CceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEecC
Q 003370 72 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDN 143 (825)
Q Consensus 72 ~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~~~ 143 (825)
....+.++..+||.+|++++.+..++++++.||. |.+ ..|. .++||.++++..+..|.+-++..|
T Consensus 18 ~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~-~~G-----k~L~-d~~tL~~~~i~~g~~i~l~~~~~G 82 (87)
T 1wh3_A 18 GSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLE-FQG-----QVLQ-DWLGLGIYGIQDSDTLILSKKKGS 82 (87)
T ss_dssp EEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEE-ETT-----EECC-SSSBHHHHTCCTTEEEEEEECSCC
T ss_pred CEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEE-ECC-----EEcc-CCCCHHHCCCCCCCEEEEEEeccC
Confidence 3456788999999999999999999999999987 322 3454 568999999999988888877543
No 22
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=94.81 E-value=0.082 Score=45.72 Aligned_cols=75 Identities=13% Similarity=0.110 Sum_probs=55.4
Q ss_pred EEEcccceEEeec-cCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCe
Q 003370 56 VEVFXLCLKLIDS-RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQD 134 (825)
Q Consensus 56 VEvyP~~l~l~~~-~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~ 134 (825)
|--.|..+.|+.. +......+.+...+||.+|++++....++++++.||+. .+ ..|+ .+.||++++++++..
T Consensus 15 ~~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif-~G-----k~Lk-D~~TL~dY~I~dgst 87 (93)
T 3plu_A 15 VPRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK-GG-----SVLK-DHISLEDYEVHDQTN 87 (93)
T ss_dssp -----CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE-TT-----EECC-TTSBTGGGTCCTTCE
T ss_pred cCCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe-CC-----EEcc-CcCCHHHcCCCCCCE
Confidence 3445667777665 33345678899999999999999999999999999984 22 3454 568999999999887
Q ss_pred EEE
Q 003370 135 ILL 137 (825)
Q Consensus 135 ~~~ 137 (825)
|-+
T Consensus 88 LhL 90 (93)
T 3plu_A 88 LEL 90 (93)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 23
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=94.54 E-value=0.14 Score=42.50 Aligned_cols=65 Identities=12% Similarity=0.229 Sum_probs=52.2
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEe
Q 003370 70 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 141 (825)
Q Consensus 70 ~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~ 141 (825)
+.....+.++..+||.+|++++....++++++.||.- .+ ..|. .+.||.++++..+..|.+-++.
T Consensus 13 ~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~-~G-----~~L~-d~~tL~~~~i~~~~~l~l~~rl 77 (79)
T 3phx_B 13 KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF-EG-----KPLE-DQLPLGEYGLKPLSTVFMNLRL 77 (79)
T ss_dssp TSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE-TT-----EECC-TTSBGGGGTCCTTCEEEEEECC
T ss_pred CCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEE-CC-----EECC-CCCcHHHCCCCCCCEEEEEEec
Confidence 3345578899999999999999999999999999873 22 3454 4789999999999887776653
No 24
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.53 E-value=0.14 Score=46.03 Aligned_cols=76 Identities=17% Similarity=0.188 Sum_probs=62.9
Q ss_pred cccceEEeeccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEE
Q 003370 59 FXLCLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 138 (825)
Q Consensus 59 yP~~l~l~~~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E 138 (825)
+...+++...+.....++.|+-..||.+|++.+.+.++++.+..||- |. + ..|+ .+.||.++|+.++..|=++
T Consensus 14 ~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLI-y~----G-KiLK-D~eTL~~~gIk~g~TIhLv 86 (118)
T 2daf_A 14 SLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIR-YS----G-KILK-NNETLVQHGVKPQEIVQVE 86 (118)
T ss_dssp SCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEE-ET----T-EEEC-SSCCHHHHSCCSSCEEEEE
T ss_pred ccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEE-EC----C-eEcC-CcchHHHcCCCCCCEEEEE
Confidence 44567776666667788999999999999999999999999999976 33 2 4665 4679999999999999999
Q ss_pred EEe
Q 003370 139 VQV 141 (825)
Q Consensus 139 ~~~ 141 (825)
++.
T Consensus 87 i~s 89 (118)
T 2daf_A 87 IFS 89 (118)
T ss_dssp EEE
T ss_pred Eec
Confidence 875
No 25
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=94.39 E-value=0.099 Score=46.10 Aligned_cols=64 Identities=13% Similarity=0.062 Sum_probs=52.3
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEec
Q 003370 73 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVD 142 (825)
Q Consensus 73 ~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~~ 142 (825)
...+.+...+||.+|++++....++++++.||.. .+ ..|.+..+||.++++..+..|.+-.+..
T Consensus 23 ~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~-~g-----k~L~D~~~tL~~ygI~~g~~l~l~~~~~ 86 (102)
T 1v5o_A 23 TFSLQVNPDFELSNFRVLCELESGVPAEEAQIVY-ME-----QLLTDDHCSLGSYGLKDGDMVVLLQKDN 86 (102)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEE-TT-----EEECCSSSBHHHHTCCTTEEEEECBCCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEE-CC-----EECCCCcccHHHCCCCCCCEEEEEECCC
Confidence 4467889999999999999999999999999973 32 3566566899999999998888776543
No 26
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=94.29 E-value=0.15 Score=41.75 Aligned_cols=65 Identities=15% Similarity=0.265 Sum_probs=52.4
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEec
Q 003370 71 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVD 142 (825)
Q Consensus 71 ~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~~ 142 (825)
.....+.++..+||.+|++++.+..+++++..||. |. . ..|. .++||.++++..+..|.+-++..
T Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~-~~----g-~~L~-d~~tL~~~~i~~g~~i~l~~~~~ 74 (76)
T 1ndd_A 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI-YS----G-KQMN-DEKTAADYKILGGSVLHLVLALR 74 (76)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ET----T-EECC-TTSBGGGGTCCTTCEEEEEECCC
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEE-EC----C-EECC-CCCcHHHcCCCCCCEEEEEEeCC
Confidence 34457788999999999999999999999999987 32 2 3453 56899999999999888877643
No 27
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=94.23 E-value=0.14 Score=44.27 Aligned_cols=64 Identities=16% Similarity=0.260 Sum_probs=51.8
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEe
Q 003370 71 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 141 (825)
Q Consensus 71 ~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~ 141 (825)
.....+.++..+||.+|++++.+..++++++.||.. . . ..|. .++||.++++..+..|.+-++.
T Consensus 27 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~----G-k~L~-D~~tL~~y~I~~gstI~lv~rl 90 (93)
T 2l7r_A 27 QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLL-A----G-APLE-DEATLGQCGVEALTTLEVAGRM 90 (93)
T ss_dssp SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEE-T----T-EECC-TTSBHHHHTCCSSCEEEEECCC
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEE-C----C-EECC-CCCcHHHCCCCCCCEEEEEEec
Confidence 344567889999999999999999999999999973 2 2 3454 5789999999999888776654
No 28
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=94.23 E-value=0.11 Score=46.19 Aligned_cols=74 Identities=15% Similarity=0.087 Sum_probs=50.7
Q ss_pred EEcc---cceEEeeccCC---CceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhc-
Q 003370 57 EVFX---LCLKLIDSRDN---SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAML- 129 (825)
Q Consensus 57 EvyP---~~l~l~~~~~~---~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~- 129 (825)
+.|| +.+++..-... ...++.+...+||.+|++++.+.++++++.-| |.+.+ .++ +.++||.++|+
T Consensus 16 ~~~~~~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QR-li~gg-----kll-~D~~TL~~ygI~ 88 (105)
T 4dbg_A 16 EVSPTQDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQ-WVIGQ-----RLA-RDQETLHSHGVR 88 (105)
T ss_dssp ----CCCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETT-----EEE-CTTCBTGGGTCC
T ss_pred CcCCCCcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEE-EeccC-----eEc-cCcCcHHHcCCC
Confidence 6787 34444432222 24578889999999999999999999999889 76432 344 46789999999
Q ss_pred cCCCeEEE
Q 003370 130 QMDQDILL 137 (825)
Q Consensus 130 ~~~~~~~~ 137 (825)
+.|..+-|
T Consensus 89 ~~G~t~hL 96 (105)
T 4dbg_A 89 QNGDSAYL 96 (105)
T ss_dssp STTCEEEE
T ss_pred CCCCEEEE
Confidence 47765544
No 29
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=94.22 E-value=0.11 Score=44.49 Aligned_cols=65 Identities=17% Similarity=0.282 Sum_probs=51.0
Q ss_pred CceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEecC
Q 003370 72 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDN 143 (825)
Q Consensus 72 ~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~~~ 143 (825)
....+.++..+||.+|++++.+..+++++..||.. . . ..|. .++||.++++..+..|.+-++..|
T Consensus 20 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~-~----G-k~L~-D~~tL~~~gi~~g~~i~l~~r~~G 84 (88)
T 1sif_A 20 KTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIF-A----G-KQLE-DGRTLSDYNIQKESTLHLVLRLRG 84 (88)
T ss_dssp CEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE-T----T-EECC-TTSBSGGGTCCTTCEEEEEC----
T ss_pred CEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEE-C----C-EECC-CCCcHHHcCCCCCCEEEEEEeCCC
Confidence 44578899999999999999999999999999973 2 2 3454 478999999999998888776543
No 30
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=94.18 E-value=0.18 Score=44.73 Aligned_cols=63 Identities=10% Similarity=0.158 Sum_probs=51.7
Q ss_pred eEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEecC
Q 003370 74 TVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDN 143 (825)
Q Consensus 74 ~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~~~ 143 (825)
..+.+...+||.+|++++.+..+++.++.||. |. . ..|. .++||.++++..+..|.+-++..+
T Consensus 29 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~----G-k~L~-D~~tL~~~gi~~g~~i~l~~~~~~ 91 (106)
T 1wx7_A 29 EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLI-FA----G-KILK-DPDSLAQCGVRDGLTVHLVIKRQH 91 (106)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEE-ET----T-EECC-TTSCHHHHTCCTTEEEEEEECCCC
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChhhEEEE-EC----C-EECC-CcCcHHHcCCCCCCEEEEEEcCCC
Confidence 56788999999999999999999999999996 22 2 3454 578999999999988888776543
No 31
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=94.17 E-value=0.091 Score=44.21 Aligned_cols=65 Identities=14% Similarity=0.266 Sum_probs=52.8
Q ss_pred CceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEecC
Q 003370 72 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDN 143 (825)
Q Consensus 72 ~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~~~ 143 (825)
....+.++..+||.+|++++.+..++++++.||+- . . ..|. .++||.++++.++..|.+-++..|
T Consensus 14 ~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~-~----g-~~L~-d~~tL~~~~i~~~~~i~l~~rl~G 78 (85)
T 3n3k_B 14 RTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-A----G-KQLE-DGRTLSDYNIHNHSALYLLLKLRG 78 (85)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE-T----B-EECC-TTCBTTTTTCCTTCEEEEEECCC-
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE-C----C-eECC-CCCCHHHCCCCCCCEEEEEEeccC
Confidence 34578899999999999999999999999999983 2 2 3454 567999999999998888877543
No 32
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=94.09 E-value=0.1 Score=44.55 Aligned_cols=67 Identities=13% Similarity=0.207 Sum_probs=54.1
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEecC
Q 003370 70 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDN 143 (825)
Q Consensus 70 ~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~~~ 143 (825)
+.....+.++..+||.+|++++.+..++++++.||.- . . ..|. .+.||.++++..+..|.+-++..|
T Consensus 9 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~----G-k~L~-D~~tL~~~~i~~g~~l~l~~rl~G 75 (88)
T 4fbj_B 9 TGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY-S----G-KQMN-DEKTAADYKILGGSVLHLVLALRG 75 (88)
T ss_dssp TCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE-T----T-EECC-TTSBTTTTTCCTTCEEEEECBCC-
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEE-C----C-eECC-CCCcHHHcCCCCCCEEEEEEECCC
Confidence 3344578899999999999999999999999999873 2 2 4554 478999999999998888877654
No 33
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=94.02 E-value=0.24 Score=43.46 Aligned_cols=61 Identities=10% Similarity=0.099 Sum_probs=50.6
Q ss_pred eEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEe
Q 003370 74 TVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 141 (825)
Q Consensus 74 ~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~ 141 (825)
..+.++..+||.+|++++.+..++++++.||.. . . ..|. .++||.++++..+..|.+-++.
T Consensus 34 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~----G-k~L~-D~~tL~~ygI~~gstI~l~~r~ 94 (100)
T 1yqb_A 34 EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF-A----G-KILK-DPDSLAQCGVRDGLTVHLVIKR 94 (100)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE-T----T-EECC-TTSBHHHHTCCTTCEEEEEECC
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE-C----C-EECC-CcCcHHHCCCCCCCEEEEEEcC
Confidence 567889999999999999999999999999873 2 2 3454 5789999999999988877664
No 34
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=93.98 E-value=0.24 Score=42.20 Aligned_cols=65 Identities=12% Similarity=0.274 Sum_probs=51.6
Q ss_pred CceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEecC
Q 003370 72 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDN 143 (825)
Q Consensus 72 ~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~~~ 143 (825)
....+.++..+||.+|++++....++++++.||. |. + ..|. .++||.++++..+..|.+-++..|
T Consensus 15 ~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~----G-k~L~-D~~tL~~~~I~~g~~i~l~~~~~g 79 (88)
T 2hj8_A 15 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT-FE----G-KPLE-DQLPLGEYGLKPLSTVFMNLRLRG 79 (88)
T ss_dssp CEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEE-SS----S-SCCC-TTSBHHHHHCSTTCEEEEEEC---
T ss_pred CEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE-EC----C-EECC-CCCcHHHcCCCCCCEEEEEEEcCC
Confidence 4456788999999999999999999999999997 32 2 3454 578999999999998888776543
No 35
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=93.98 E-value=0.16 Score=42.21 Aligned_cols=64 Identities=13% Similarity=0.201 Sum_probs=51.2
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEe
Q 003370 71 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 141 (825)
Q Consensus 71 ~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~ 141 (825)
.....+.++..+||.+|++++++..++++++.||.. . + ..|. .++||.++++.++..|.+-++.
T Consensus 13 g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~-~----G-~~L~-d~~tl~~~~i~~~~~i~l~~~~ 76 (79)
T 2uyz_B 13 SSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-E----G-QRIA-DNHTPKELGMEEEDVIEVYQEQ 76 (79)
T ss_dssp CCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-T----T-EECC-TTCCHHHHTCCTTEEEEEEECC
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE-C----C-EEeC-CCCCHHHcCCCCCCEEEEEEec
Confidence 344578889999999999999999999999999863 3 2 3454 5689999999998877665553
No 36
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=93.96 E-value=0.16 Score=43.86 Aligned_cols=67 Identities=15% Similarity=0.294 Sum_probs=54.3
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEecCc
Q 003370 71 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDNG 144 (825)
Q Consensus 71 ~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~~~~ 144 (825)
.....+.++..+||.+|++++.+..+++++..||. |.+ ..|. .+.||.++++..+..|.+-++..|+
T Consensus 11 g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~-~~G-----~~L~-d~~tL~~~~i~~~~~i~l~~r~~gG 77 (96)
T 3k9o_B 11 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLSDYNIQKESTLHLVLRLRGY 77 (96)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ETT-----EECC-TTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred CCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEE-ECC-----EECC-CCCcHHHcCCCCCCEEEEEEEcCCC
Confidence 34457889999999999999999999999999998 332 3454 5679999999999988888876543
No 37
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=93.89 E-value=0.22 Score=42.84 Aligned_cols=62 Identities=15% Similarity=0.221 Sum_probs=49.6
Q ss_pred CCceEEEeCcc-----ccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEE
Q 003370 71 NSQTVIRLSKK-----ASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 138 (825)
Q Consensus 71 ~~~~~~~~Sk~-----~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E 138 (825)
.....+.+... .||.+|++++.+..++++++.||. |. . ..|.+.+.+|.++++..+..|.+-
T Consensus 16 ~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~-~~----G-k~L~D~~~~L~~~~i~~g~~i~l~ 82 (92)
T 1wxv_A 16 NEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLI-FK----G-KSLKEMETPLSALGIQDGCRVMLI 82 (92)
T ss_dssp SSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEE-ET----T-EEECCSSSBHHHHTCCSSEEEEEE
T ss_pred CEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEE-EC----C-eecCCCcccHHHCCCCCCCEEEEE
Confidence 33446677774 999999999999999999999997 32 2 456666789999999998887775
No 38
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=93.87 E-value=0.16 Score=43.64 Aligned_cols=63 Identities=16% Similarity=0.286 Sum_probs=50.6
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEE
Q 003370 71 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 140 (825)
Q Consensus 71 ~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~ 140 (825)
.....+.++..+||.+|++++.+..+++++..||.- .+ ..|. .++||.++++..+..|.+-++
T Consensus 27 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~-~G-----k~L~-D~~tL~~~gi~~g~~i~l~~r 89 (91)
T 3v6c_B 27 GTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AG-----KQLE-DGRTLSDYNIQKESTLHLVLR 89 (91)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE-TT-----EECC-TTCBTGGGTCCTTCEEEEECC
T ss_pred CCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEE-CC-----eECC-CcCcHHHCCCCCCCEEEEEEe
Confidence 344578899999999999999999999999999883 22 3454 568999999999987776543
No 39
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=93.86 E-value=0.12 Score=43.93 Aligned_cols=64 Identities=14% Similarity=0.225 Sum_probs=51.5
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEe
Q 003370 71 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 141 (825)
Q Consensus 71 ~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~ 141 (825)
.....+.++..+||.+|++++.+..+++++..||.- . . ..|. .++||.++++..+..|.+-++.
T Consensus 22 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~-~----G-~~L~-d~~tL~~~~i~~~~~i~l~~rl 85 (88)
T 3dbh_I 22 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY-S----G-KQMN-DEKTAADYKILGGSVLHLVLRL 85 (88)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE-T----T-EECC-TTSBGGGGTCCTTCEEEECCCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEE-C----C-eECC-CCCcHHHcCCCCCCEEEEEEeC
Confidence 344578899999999999999999999999988873 2 2 3554 4789999999998887776553
No 40
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=93.80 E-value=0.16 Score=42.59 Aligned_cols=65 Identities=15% Similarity=0.296 Sum_probs=52.9
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEec
Q 003370 71 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVD 142 (825)
Q Consensus 71 ~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~~ 142 (825)
.....+.++..+||.+|++++.+..++++++.||. |.+ ..|. .+.||.++++..+..|.+-++..
T Consensus 13 g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~-~~g-----~~L~-d~~tL~~~~i~~~~~l~l~~r~~ 77 (85)
T 3mtn_B 13 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLSDYNIQKWSTLFLLLRLR 77 (85)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE-ETT-----EECC-TTSBTGGGTCCTTCEEEEECCCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEE-ECC-----EECC-CCCCHHHcCCCCCCEEEEEEECc
Confidence 34457889999999999999999999999999988 322 3454 56899999999998888877643
No 41
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=93.73 E-value=0.22 Score=43.36 Aligned_cols=73 Identities=15% Similarity=0.217 Sum_probs=55.3
Q ss_pred ceEEeec-cCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEE
Q 003370 62 CLKLIDS-RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 140 (825)
Q Consensus 62 ~l~l~~~-~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~ 140 (825)
.++|.+. .+.....+.++..+||.+|+++++...++++++.||.. .+ ..|. .++||.++++..+..|.+=++
T Consensus 21 ~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif-~G-----k~L~-d~~tl~dy~i~~g~~I~l~~~ 93 (97)
T 1wyw_B 21 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EG-----QRIA-DNHTPKELGMEEEDVIEVYQE 93 (97)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TT-----EECC-TTCCHHHHTCCTTCEEEEEES
T ss_pred cEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE-CC-----eEcC-CCCCHHHCCCCCCCEEEEEEe
Confidence 3444443 23345678899999999999999999999999999873 32 3454 568999999999987776655
Q ss_pred e
Q 003370 141 V 141 (825)
Q Consensus 141 ~ 141 (825)
.
T Consensus 94 ~ 94 (97)
T 1wyw_B 94 Q 94 (97)
T ss_dssp S
T ss_pred c
Confidence 3
No 42
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=93.70 E-value=0.21 Score=43.42 Aligned_cols=66 Identities=15% Similarity=0.318 Sum_probs=53.8
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEecC
Q 003370 71 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDN 143 (825)
Q Consensus 71 ~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~~~ 143 (825)
.....+.++..+||.+|++++.+..++++++.||. |. . ..|. .++||.++++..+..|.+-++..|
T Consensus 10 g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~-~~----G-k~L~-D~~tL~~~gi~~g~~i~l~~~~~g 75 (98)
T 1yx5_B 10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FA----G-KQLE-DGRTLSDYNIQKESTLHLVLRLRG 75 (98)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEE-ET----T-EECC-TTSBTGGGTCCTTCEEEEEECCCC
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEE-EC----C-EECC-CCCCHHHcCCCCCCEEEEEEeCCC
Confidence 34457889999999999999999999999999987 32 2 3454 478999999999999888887644
No 43
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=93.55 E-value=0.21 Score=41.04 Aligned_cols=62 Identities=21% Similarity=0.302 Sum_probs=49.6
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEE
Q 003370 70 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 138 (825)
Q Consensus 70 ~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E 138 (825)
......+.++..+||.+|++++.+..+++++..||. |.+ ..|. .+.||.++++..+..|.+-
T Consensus 12 ~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~-~~g-----k~L~-d~~tL~~~~i~~g~~i~l~ 73 (77)
T 2bwf_A 12 GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLI-YSG-----KILK-DDQTVESYHIQDGHSVHLV 73 (77)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ETT-----EECC-TTSBTGGGTCCTTCEEEEE
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEE-ECC-----eEcC-CCCCHHHcCCCCCCEEEEE
Confidence 333457889999999999999999999999999987 332 3454 4689999999998877664
No 44
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=93.53 E-value=0.23 Score=42.34 Aligned_cols=63 Identities=16% Similarity=0.191 Sum_probs=49.7
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEe
Q 003370 71 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 141 (825)
Q Consensus 71 ~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~ 141 (825)
.....+.++..+||.+|++++....++++++.||.. . . ..|. .+.||.++++ .+..|.+=++.
T Consensus 15 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~-~----G-k~L~-d~~tL~~~~i-~g~~i~l~~~~ 77 (90)
T 4dwf_A 15 SQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY-Q----G-RVLQ-DDKKLQEYNV-GGKVIHLVERA 77 (90)
T ss_dssp CCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE-T----T-EECC-TTSBGGGGTC-TTEEEEEEECC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE-C----C-eECC-CCCCHHHcCC-CCcEEEEEecC
Confidence 344578889999999999999999999999999873 2 2 4554 4789999999 77766665553
No 45
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=93.43 E-value=0.2 Score=42.51 Aligned_cols=69 Identities=12% Similarity=0.202 Sum_probs=52.0
Q ss_pred ccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccC-ccCccCCHHHHhccCCCeEEEEEE
Q 003370 68 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSP-LDVSDQTLDDAMLQMDQDILLEVQ 140 (825)
Q Consensus 68 ~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~-l~~~~~tl~~~~~~~~~~~~~E~~ 140 (825)
+++.......|...+|+.+|.+.|.. .+.+...++|.--+... .+ ..+.++||+|+||.....|++|.+
T Consensus 14 lpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk---~l~~~d~~~TL~e~gL~p~a~L~ve~k 83 (84)
T 3qx1_A 14 TPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRR---DVTQLDPNKSLLEVKLFPQETLFLEAK 83 (84)
T ss_dssp CTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCC---BGGGSCTTSBTTTTTCCSEEEEEEEEC
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCC---CCcCCCCCCCHHHCCCCCCCEEEEEec
Confidence 46777778899999999999999987 45566677776322211 22 236789999999999889999864
No 46
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=93.33 E-value=0.28 Score=43.83 Aligned_cols=64 Identities=16% Similarity=0.274 Sum_probs=52.3
Q ss_pred CceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEec
Q 003370 72 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVD 142 (825)
Q Consensus 72 ~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~~ 142 (825)
....+.++..+||.+|++++.+..+++++..||.. . . ..|. .++||.++++..+..|.+-++.-
T Consensus 46 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~----G-k~L~-D~~tL~~~gI~~gs~I~l~~rl~ 109 (111)
T 2ojr_A 46 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-A----G-KQLE-DGRTLSDYNIQKESTLHLVLRLR 109 (111)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEE-T----T-EECC-SSCBTTTTTCCTTCEEEEEECCC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEE-C----C-EECC-CCCcHHHcCCCCCCEEEEEEeCC
Confidence 34567889999999999999999999999999873 2 2 3454 47899999999999888877643
No 47
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.31 E-value=0.15 Score=44.30 Aligned_cols=66 Identities=17% Similarity=0.073 Sum_probs=50.2
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEE
Q 003370 73 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 138 (825)
Q Consensus 73 ~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E 138 (825)
...+.+...+||.+|++++....++++++.||.......+....|.+.++||.++++..+..|.+.
T Consensus 20 ~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~ 85 (95)
T 1v6e_A 20 RSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85 (95)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEB
T ss_pred eEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEE
Confidence 467889999999999999999999999999998532111110124456789999999998876554
No 48
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=93.19 E-value=0.26 Score=43.28 Aligned_cols=62 Identities=13% Similarity=0.193 Sum_probs=50.6
Q ss_pred CceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEE
Q 003370 72 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 140 (825)
Q Consensus 72 ~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~ 140 (825)
....+.++..+||.+|++++.+..+++++..||. |. + ..|. .++||.++++..+..|.+-++
T Consensus 35 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~----G-k~L~-D~~tL~~~gI~~g~~I~l~~~ 96 (101)
T 2klc_A 35 EKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLI-FA----G-KILK-DQDTLSQHGIHDGLTVHLVIK 96 (101)
T ss_dssp CEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEE-ET----T-EEEC-TTCCTGGGTCCTTCEEEEEEC
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEE-EC----C-EECC-CcCcHHHcCCCCCCEEEEEEc
Confidence 3456788999999999999999999999999986 22 2 3454 578999999999988877654
No 49
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=93.06 E-value=0.52 Score=39.95 Aligned_cols=64 Identities=28% Similarity=0.324 Sum_probs=52.0
Q ss_pred ceEE-EeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEecC
Q 003370 73 QTVI-RLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDN 143 (825)
Q Consensus 73 ~~~~-~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~~~ 143 (825)
...+ .++..+||.+|++++.+..++++++.||.. . . ..|. .++||.++++..+..|.+-++..|
T Consensus 20 ~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~-~----g-k~L~-d~~tL~~~~i~~g~~i~l~~~~~g 84 (89)
T 1wy8_A 20 TCTIEDVSRKATIEELRERVWALFDVRPECQRLFY-R----G-KQLE-NGYTLFDYDVGLNDIIQLLVRPDS 84 (89)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEE-T----T-EECC-SSSBHHHHTCCTTCEEEEEECCCC
T ss_pred eEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEE-C----C-eECC-CCCCHHHCCCCCCCEEEEEEeCCC
Confidence 4567 489999999999999999999999999973 2 2 3454 578999999999998887776543
No 50
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=92.94 E-value=0.23 Score=45.31 Aligned_cols=66 Identities=15% Similarity=0.090 Sum_probs=50.9
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEE
Q 003370 73 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 138 (825)
Q Consensus 73 ~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E 138 (825)
...+.+...+||.+|+.++....+++++..||............|.+.++||.++++..+..|.+-
T Consensus 19 ~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvv 84 (122)
T 1t0y_A 19 PMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV 84 (122)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred cEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEE
Confidence 467889999999999999999999999999998533111211134456889999999998877654
No 51
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=92.94 E-value=0.21 Score=43.55 Aligned_cols=65 Identities=15% Similarity=0.324 Sum_probs=52.3
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEe
Q 003370 70 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 141 (825)
Q Consensus 70 ~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~ 141 (825)
+.....+.+...+||.+|++++.+..++++++.||. |.+ ..|. .++||.++++..+..|.+-++.
T Consensus 31 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~G-----k~L~-D~~tL~~~~i~~g~~i~l~~rl 95 (98)
T 4hcn_B 31 TGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLSDYNIQKESTLHLVLRL 95 (98)
T ss_dssp TCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEE-ETT-----EECC-TTCBSGGGTCCTTEEEEEECBC
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE-ECC-----EECC-CCCcHHHCCCCCCCEEEEEEec
Confidence 344567889999999999999999999999999988 332 3453 5789999999998887776654
No 52
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=92.80 E-value=0.32 Score=41.27 Aligned_cols=60 Identities=18% Similarity=0.239 Sum_probs=47.4
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEE
Q 003370 70 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 137 (825)
Q Consensus 70 ~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~ 137 (825)
+.....+.++..+||.+|++++....++++++-||.- . + ..|. .+.||.++++ ++..|-+
T Consensus 26 ~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~-~----G-k~L~-D~~tL~~~~i-~g~~i~l 85 (88)
T 4eew_A 26 DSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY-Q----G-RVLQ-DDKKLQEYNV-GGKVIHL 85 (88)
T ss_dssp TSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE-T----T-EECC-TTSBGGGGTC-TTEEEEE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE-C----C-EECC-CCCcHHHcCC-CCcEEEE
Confidence 3444578899999999999999999999999999873 2 2 4554 4789999999 6765544
No 53
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=92.79 E-value=0.32 Score=44.00 Aligned_cols=66 Identities=14% Similarity=0.139 Sum_probs=52.3
Q ss_pred CceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhcc-------CCCeEEEEEEecCc
Q 003370 72 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQ-------MDQDILLEVQVDNG 144 (825)
Q Consensus 72 ~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~-------~~~~~~~E~~~~~~ 144 (825)
....+.+...+||.+|++++....++++++-||. |.+ ..| +.++||.++++. .+..|-+=++.+|.
T Consensus 12 tti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi-~~G-----k~L-eD~~TLsdy~I~~~~a~~q~~stL~L~lr~~g~ 84 (118)
T 2fnj_B 12 TTIFTDAKESSTVFELKRIVEGILKRPPEEQRLY-KDD-----QLL-DDGKTLGECGFTSQTARPQAPATVGLAFRADDT 84 (118)
T ss_dssp EEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEE-ETT-----EEC-CTTSBHHHHTCCTTTSBTTBCEEEEEEEBSSSC
T ss_pred EEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEE-ECC-----eEC-CCCCCHHHcCcccccccCCCCCEEEEEecCCCc
Confidence 3456788999999999999999999999999998 333 355 467899999999 46666666775443
No 54
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=92.74 E-value=0.4 Score=40.08 Aligned_cols=56 Identities=18% Similarity=0.125 Sum_probs=47.0
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeE
Q 003370 73 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI 135 (825)
Q Consensus 73 ~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~ 135 (825)
...+.+.+..+++.|++..|+..+++.+.+|++. .+ ..| ..++|++++++.++..|
T Consensus 20 ~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~f-dG-----~~l-~~~~Tp~~l~medgD~I 75 (79)
T 3a4r_A 20 MLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFF-DG-----TKL-SGKELPADLGLESGDLI 75 (79)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEE-TT-----EEC-CSCCCHHHHTCCTTCEE
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CC-----EEc-CCCCCHHHcCCCCCCEE
Confidence 5678999999999999999999999999999983 43 334 36789999999987764
No 55
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=92.70 E-value=0.47 Score=40.09 Aligned_cols=61 Identities=20% Similarity=0.182 Sum_probs=49.9
Q ss_pred CceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccC-ccCccCCHHHHhccCCCeEEEEE
Q 003370 72 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSP-LDVSDQTLDDAMLQMDQDILLEV 139 (825)
Q Consensus 72 ~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~-l~~~~~tl~~~~~~~~~~~~~E~ 139 (825)
....+.++..+||.+|++++....++++++.||.. .+ .. |+ .++||.++++..+..|.+-+
T Consensus 21 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~G-----k~lL~-D~~tL~~y~I~~gs~i~lv~ 82 (84)
T 2kk8_A 21 SSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIV-DG-----IVILR-EDLTVEQCQIVPTSDIQLEV 82 (84)
T ss_dssp CEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE-TT-----EECCC-SSSBHHHHTCCTTSCEEEEE
T ss_pred cEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE-CC-----EEecC-CcCCHHHcCCCCCCEEEEEE
Confidence 44578899999999999999999999999999973 32 33 54 57899999999988776644
No 56
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=92.67 E-value=0.34 Score=44.41 Aligned_cols=66 Identities=14% Similarity=0.123 Sum_probs=52.2
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEecC
Q 003370 71 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDN 143 (825)
Q Consensus 71 ~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~~~ 143 (825)
.....+.++..+||.+|++++.+..+++.++.||.. . . ..|. .++||.++++..+..|.+-++..+
T Consensus 41 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~----G-k~L~-D~~tL~dygI~~gstI~lv~~~~g 106 (125)
T 1j8c_A 41 KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIF-A----G-KILK-DQDTLIQHGIHDGLTVHLVIKRDP 106 (125)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEE-T----T-EEES-TTSCGGGTTCSSSEEEEEEEC---
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEE-C----C-EEcC-CCCCHHHcCCCCCCEEEEEeccCC
Confidence 344678899999999999999999999999999973 2 2 3554 568999999999988888776543
No 57
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=92.50 E-value=0.34 Score=43.26 Aligned_cols=65 Identities=14% Similarity=0.122 Sum_probs=52.8
Q ss_pred CceEEEeCc-cccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEecC
Q 003370 72 SQTVIRLSK-KASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDN 143 (825)
Q Consensus 72 ~~~~~~~Sk-~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~~~ 143 (825)
....+.++. .+||.+|++++....++++++.||.. . . .+|. .+.||.++++..+..|.+-++..|
T Consensus 41 ~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~-~----G-k~L~-D~~tL~~y~I~~g~~l~l~~r~~G 106 (111)
T 1we6_A 41 QFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSG-K----A-GFLK-DNMSLAHYNVGAGEILTLSLRERS 106 (111)
T ss_dssp CCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEEC-S----S-SBCC-TTSBTTTTTCSSSCEEEEECSSCC
T ss_pred cEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEE-C----C-EECC-CCCcHHHCCCCCCCEEEEEEEcCC
Confidence 345688897 99999999999999999999999873 2 2 3554 478999999999998888876543
No 58
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=92.49 E-value=0.38 Score=43.00 Aligned_cols=65 Identities=15% Similarity=0.323 Sum_probs=52.7
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEe
Q 003370 70 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 141 (825)
Q Consensus 70 ~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~ 141 (825)
+.....+.++..+||.+|++++.+..+++++..||. |.+ ..|. .++||.++++..+..|.+-++.
T Consensus 44 ~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~G-----k~L~-D~~tL~~~gI~~gs~I~l~~rl 108 (111)
T 3vdz_A 44 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLSDYNIQKESTLHLVLRL 108 (111)
T ss_dssp SSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ETT-----EECC-TTSBTTTTTCCTTCEEEEEECC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEE-ECC-----EECC-CCCcHHHCCCCCCCEEEEEEec
Confidence 334567889999999999999999999999999998 332 3454 5679999999999888777664
No 59
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=92.46 E-value=0.25 Score=41.86 Aligned_cols=60 Identities=10% Similarity=0.189 Sum_probs=48.0
Q ss_pred CceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEE
Q 003370 72 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 138 (825)
Q Consensus 72 ~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E 138 (825)
....+.++..+||.+|++++.+..++++++.||. |. . ..|. .++||.++++..+..|.+-
T Consensus 22 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~----G-k~L~-D~~tL~~~gi~~g~~l~l~ 81 (85)
T 2kd0_A 22 KSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLI-FK----G-KVLV-ETSTLKQSDVGSGAKLMLM 81 (85)
T ss_dssp EEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEE-ET----T-EECC-TTCBTTTTTCCTTEEEEEE
T ss_pred EEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE-EC----C-eECC-CcCCHHHCCCCCCCEEEEE
Confidence 3446778999999999999999999999999987 32 2 3453 5689999999988876653
No 60
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=92.40 E-value=0.49 Score=39.66 Aligned_cols=74 Identities=14% Similarity=0.202 Sum_probs=54.3
Q ss_pred ccceEEeecc-CCCceEEEeCccccHHHHHHHHHHH---hCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeE
Q 003370 60 XLCLKLIDSR-DNSQTVIRLSKKASTRQLYEKVCKL---RGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI 135 (825)
Q Consensus 60 P~~l~l~~~~-~~~~~~~~~Sk~~ti~~L~~~v~~~---~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~ 135 (825)
|..++|.... ......+.++..+||.+|++++.+. -++++++.||. |. + ..|. .++||.++++..+..|
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi-~~----G-k~L~-D~~tL~~~~i~~g~~i 75 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLI-YA----G-KILS-DDVPIRDYRIDEKNFV 75 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEE-ET----T-EECC-TTSBGGGGCCCTTSEE
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEE-EC----C-EECc-CCCCHHHcCCCCCCEE
Confidence 3344444432 3344578899999999999999997 57999999987 32 2 3554 5689999999999988
Q ss_pred EEEEE
Q 003370 136 LLEVQ 140 (825)
Q Consensus 136 ~~E~~ 140 (825)
.+-++
T Consensus 76 ~l~~~ 80 (85)
T 2wyq_A 76 VVMVT 80 (85)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 87654
No 61
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=92.29 E-value=0.35 Score=42.45 Aligned_cols=60 Identities=13% Similarity=0.262 Sum_probs=49.3
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEE
Q 003370 71 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 137 (825)
Q Consensus 71 ~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~ 137 (825)
.....+.+.-.+||.+|++++.+.+++++++.||- |. + ..|. .++||.++++..+..|++
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI-~~----G-KiL~-D~~TL~~y~I~~gsti~v 88 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQENYIKIV-IN----K-KQLQ-LGKTLEEQGVAHNVKAMV 88 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEE-ET----T-EECC-TTSBHHHHTCCSSEEEEE
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEE-eC----C-eECC-CCCcHHHcCCCCCCEEEE
Confidence 34568889999999999999999999999999886 33 2 4564 568999999999987743
No 62
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.28 E-value=0.36 Score=39.99 Aligned_cols=60 Identities=12% Similarity=0.148 Sum_probs=48.1
Q ss_pred CceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEE
Q 003370 72 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 138 (825)
Q Consensus 72 ~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E 138 (825)
....+.++..+||.+|++++.+..+++++..||.. . + ..|. .++||.++++..+..|.+-
T Consensus 18 ~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~-~----g-k~L~-d~~tL~~~~i~~g~~i~l~ 77 (81)
T 2dzi_A 18 RECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF-K----G-KALA-DGKRLSDYSIGPNSKLNLV 77 (81)
T ss_dssp CEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEE-T----T-EECC-TTSBGGGGTCCSSBCCEEE
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE-C----C-eECC-CCCcHHHcCCCCCCEEEEE
Confidence 34567889999999999999999999999999863 2 2 3454 5789999999988776654
No 63
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=92.15 E-value=0.38 Score=42.18 Aligned_cols=61 Identities=10% Similarity=0.143 Sum_probs=49.9
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEE
Q 003370 71 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 138 (825)
Q Consensus 71 ~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E 138 (825)
.....+.+...+||.+|++++....++++++.||.. . + ..|+ ++.||.++++..+..|-|.
T Consensus 38 Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~-~----G-k~L~-D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 38 GKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKK-W----Y-TIFK-DHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp SSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEE-T----T-EECC-SSCBHHHHTCCTTEEEEEE
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEE-C----C-EECC-CCCCHHHcCCCCCCEEEEE
Confidence 345678899999999999999999999999999973 2 3 4564 5789999999988776554
No 64
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=92.08 E-value=0.4 Score=43.15 Aligned_cols=66 Identities=17% Similarity=0.297 Sum_probs=54.2
Q ss_pred CceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEecCc
Q 003370 72 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDNG 144 (825)
Q Consensus 72 ~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~~~~ 144 (825)
....+.++..+||.+|++++....++++++.||.. . . ..|. .++||.++++..+..|.+-++..|+
T Consensus 20 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~----G-k~L~-D~~tL~~ygI~~gstI~l~~~~~GG 85 (114)
T 2kdi_A 20 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIW-A----G-KQLE-DGRTLSDYNIQRESTLHLVLRLRGG 85 (114)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE-T----T-EECC-TTCBTTTTTCCSSCEEEEEECCCSS
T ss_pred cEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE-C----C-EECC-CCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 44578899999999999999999999999999872 2 2 3454 5789999999999998888876543
No 65
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=92.03 E-value=0.25 Score=42.79 Aligned_cols=64 Identities=9% Similarity=0.103 Sum_probs=50.6
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEe
Q 003370 71 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 141 (825)
Q Consensus 71 ~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~ 141 (825)
.....+.+...+||.+|++++.+..++++++.||.. . . ..|. .++||.++++..+..|.+-++.
T Consensus 26 g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~-~----G-k~L~-D~~tL~~~gi~~g~~i~l~~~~ 89 (96)
T 1wx8_A 26 QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIF-T----G-KILR-DQDILSQRGILDGSTVHVVVRS 89 (96)
T ss_dssp SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEE-T----T-EECC-TTSCHHHHTCCTTEEEECCBCC
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE-C----C-EECC-CcCCHHHCCCCCCCEEEEEEeC
Confidence 344567889999999999999999999999988872 2 2 3454 5689999999988877665543
No 66
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=91.98 E-value=0.29 Score=44.15 Aligned_cols=66 Identities=14% Similarity=0.169 Sum_probs=52.9
Q ss_pred CceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccC-------CCeEEEEEEecCc
Q 003370 72 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQM-------DQDILLEVQVDNG 144 (825)
Q Consensus 72 ~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~-------~~~~~~E~~~~~~ 144 (825)
....+.+...+||.+|++++....++++++-||+ |.+ .+|+ .++||.++|+.. +..|-+=++.+|.
T Consensus 12 tTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI-~~G-----k~Le-D~kTL~dy~I~~~ta~~q~~atl~Lvlr~~~~ 84 (118)
T 4ajy_B 12 TTIFTDAKESSTVFELKRIVEGILKRPPDEQRLY-KDD-----QLLD-DGKTLGECGFTSQTARPQAPATVGLAFRADDT 84 (118)
T ss_dssp EEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEE-ETT-----EECC-TTSBTTTTTCCGGGSBTTBCEEEEEEECCSSC
T ss_pred EEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEE-eCC-----eECC-CcCCHHHcCCCcCcccCCCCCEEEEEEecCCC
Confidence 3445678899999999999999999999999999 332 4564 688999999998 7777676766554
No 67
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=91.92 E-value=0.13 Score=45.29 Aligned_cols=62 Identities=19% Similarity=0.245 Sum_probs=49.0
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEE
Q 003370 70 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 138 (825)
Q Consensus 70 ~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E 138 (825)
......+.++..+||.+|++++.+..++++++.||.- . + ..|. .++||.++++..+..|.+-
T Consensus 36 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~----G-k~L~-D~~tL~~~gI~~g~tI~lv 97 (101)
T 3m63_B 36 GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIY-S----G-KILK-DDQTVESYHIQDGHSVHLV 97 (101)
T ss_dssp SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEE-T----T-EECC-TTSBTTTTTCCTTEEEEEC
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEE-C----C-EECC-CcCcHHHCCCCCCCEEEEE
Confidence 3344567889999999999999999999999889873 2 2 3554 4789999999988776653
No 68
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=91.78 E-value=0.41 Score=47.11 Aligned_cols=66 Identities=15% Similarity=0.318 Sum_probs=53.5
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEecC
Q 003370 71 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDN 143 (825)
Q Consensus 71 ~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~~~ 143 (825)
.....+.++..+||.+|++++....++++++.||. +.+ ..|. .+.||.++++..+..|.+-++..|
T Consensus 115 Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi-~~G-----k~L~-D~~tL~dygI~~gstI~LvlrlrG 180 (189)
T 3q3f_A 115 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLSDYNIQKESTLHLVLRLRG 180 (189)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEE-ETT-----EECC-TTCBGGGGTCCTTCEEEECCCCCC
T ss_pred CCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEE-ECC-----EECC-CCCCHHHCCCCCCCEEEEEEEcCC
Confidence 34567899999999999999999999999998887 322 4554 478999999999998887776543
No 69
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.77 E-value=0.3 Score=42.38 Aligned_cols=58 Identities=14% Similarity=0.298 Sum_probs=46.3
Q ss_pred CceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEE
Q 003370 72 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 137 (825)
Q Consensus 72 ~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~ 137 (825)
....+.+...+||.+|++++.+..++++++-||. |. . ..| + +.+|.++++..+..|.+
T Consensus 27 ~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~-~~----G-k~L-d-d~tL~~~~i~~g~~i~l 84 (95)
T 1v86_A 27 TKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVM-YK----G-LVP-E-DKTLREIKVTSGAKIMV 84 (95)
T ss_dssp EEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCB-SS----S-BCC-S-SSBHHHHCCCTTEEEEE
T ss_pred EEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE-EC----C-eeC-C-cCcHHHCCCCCCCEEEE
Confidence 3446788999999999999999999999988887 22 2 345 3 34999999998877665
No 70
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=91.48 E-value=0.28 Score=43.47 Aligned_cols=64 Identities=11% Similarity=0.167 Sum_probs=52.3
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEe
Q 003370 71 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 141 (825)
Q Consensus 71 ~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~ 141 (825)
.....+.+...+||.+|++++....++++++.||.. . + ..|. .++||.++++..+..|.+-++.
T Consensus 11 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~----G-k~L~-D~~tL~~~~i~~g~~i~lv~~~ 74 (106)
T 3m62_B 11 KEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIY-S----G-KVLQ-DSKTVSECGLKDGDQVVFMVSQ 74 (106)
T ss_dssp CCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEE-T----T-EECC-TTSBTTTTTCCTTCEEEEECCC
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE-C----C-EECC-CcCCHHHcCCCCCCEEEEEEcC
Confidence 344567889999999999999999999999999873 2 2 4565 4789999999999988887664
No 71
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=91.33 E-value=0.7 Score=41.19 Aligned_cols=68 Identities=13% Similarity=0.078 Sum_probs=52.7
Q ss_pred ccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCcc--CccCCHHHHhccCCCeEEEEE
Q 003370 68 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLD--VSDQTLDDAMLQMDQDILLEV 139 (825)
Q Consensus 68 ~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~--~~~~tl~~~~~~~~~~~~~E~ 139 (825)
+++......+|...+||.+|.+.|....+.+...+.|.--+.. ..+. +.++||+|+||.....|+++.
T Consensus 20 lpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPr----k~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 20 LPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPR----REFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp CSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSC----CBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCC----cCCcccccCCCHHHCCCCCceEEEEEE
Confidence 4777777889999999999999999887766666777642221 2233 578999999999988888884
No 72
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=91.23 E-value=0.82 Score=40.74 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=53.1
Q ss_pred ccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEec
Q 003370 68 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVD 142 (825)
Q Consensus 68 ~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~~ 142 (825)
+++......+|...+||.+|+..|... +.....++|.--+... .+-.+.++||+++||.....|+||..++
T Consensus 30 lpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk---~l~~d~~~TL~e~gL~p~a~L~Ve~~~~ 100 (109)
T 2cr5_A 30 CPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRR---ALEVEGGSSLEDIGITVDTVLNVEEKEQ 100 (109)
T ss_dssp CTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCC---BCCCCSSCBHHHHTCSSCEEEEEEECCC
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCc---CCCCCCCCCHHHcCCCCCeEEEEEeCCC
Confidence 577777889999999999999999854 4445567776433221 2323678999999999988999987654
No 73
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=90.93 E-value=0.39 Score=41.41 Aligned_cols=60 Identities=15% Similarity=0.269 Sum_probs=48.5
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEE
Q 003370 70 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDIL 136 (825)
Q Consensus 70 ~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~ 136 (825)
+.....+.+.+..+++.|++..|+..+++++.+|+.. .+ ..| ..++|++++++.++..|=
T Consensus 14 ~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~F-dG-----~~l-~~~~Tp~dl~medgD~Id 73 (91)
T 2io0_B 14 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF-DG-----QPI-NETDTPAQLEMEDEDTID 73 (91)
T ss_dssp TSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEE-TT-----EEC-CTTCCTTTTTCCTTEEEE
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CC-----EEc-CCCCCHHHcCCCCCCEEE
Confidence 3445688999999999999999999999999999983 33 334 367899999999887543
No 74
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=90.75 E-value=0.76 Score=37.76 Aligned_cols=59 Identities=22% Similarity=0.317 Sum_probs=48.4
Q ss_pred EEE-eCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEE
Q 003370 75 VIR-LSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 140 (825)
Q Consensus 75 ~~~-~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~ 140 (825)
.+. ++..+||.+|++++....++++++.||.. . + ..|. .++||.++++..+..|.+-++
T Consensus 17 ~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~-~----g-~~L~-d~~tL~~~~i~~g~~i~l~~r 76 (78)
T 2faz_A 17 TVDSLSRLTKVEELRRKIQELFHVEPGLQRLFY-R----G-KQME-DGHTLFDYEVRLNDTIQLLVR 76 (78)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE-T----T-EECC-TTCBTTTTTCCTTCEEEEEEC
T ss_pred EEeccCCCCCHHHHHHHHHHHHCcChhhEEEEE-C----C-EECC-CCCCHHHcCCCCCCEEEEEEe
Confidence 677 99999999999999999999999999873 2 2 3454 568999999999887776543
No 75
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=90.55 E-value=0.89 Score=40.80 Aligned_cols=63 Identities=13% Similarity=0.097 Sum_probs=52.0
Q ss_pred eEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEecC
Q 003370 74 TVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDN 143 (825)
Q Consensus 74 ~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~~~ 143 (825)
..+.++..+||.+|++++....++++++.||.. . . ..|. .+.||.++++..+..|.+-++..|
T Consensus 48 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~-~----G-k~L~-D~~tL~~y~i~~g~~i~lv~rl~G 110 (115)
T 1we7_A 48 LVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQY-E----G-IFIK-DSNSLAYYNMASGAVIHLALKERS 110 (115)
T ss_dssp EEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEE-T----T-EEEC-TTSBHHHHTCCSSCEEEEEECCCS
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE-C----C-EECC-CCCCHHHCCCCCCCEEEEEEEcCC
Confidence 467889999999999999999999999999873 2 2 3554 568999999999998888777544
No 76
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=90.23 E-value=1.1 Score=38.67 Aligned_cols=64 Identities=14% Similarity=0.211 Sum_probs=51.1
Q ss_pred CCceEEEeCccccHHHHHHHHHHH---hCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEe
Q 003370 71 NSQTVIRLSKKASTRQLYEKVCKL---RGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 141 (825)
Q Consensus 71 ~~~~~~~~Sk~~ti~~L~~~v~~~---~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~ 141 (825)
.....+.++..+||.+|++++.+. -++++++.||. |. + ..|. .+.||.++++..+..|.+-++.
T Consensus 10 g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi-~~----G-k~L~-D~~tL~~ygI~~g~~i~l~~~~ 76 (95)
T 1uel_A 10 QQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLI-YA----G-KILN-DDTALKEYKIDEKNFVVVMVTK 76 (95)
T ss_dssp CCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEE-ET----T-EECC-TTSBGGGGTCCSSSEEEEEESS
T ss_pred CCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEE-EC----C-EECC-CcCcHHHCCCCCCCEEEEEEeC
Confidence 344578899999999999999998 57999999986 32 2 3454 4689999999999988887653
No 77
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=89.75 E-value=0.58 Score=41.44 Aligned_cols=66 Identities=11% Similarity=0.126 Sum_probs=50.5
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCc---------------ceEEEEeccCcccccCccCccCCHHHHhccCCCeE
Q 003370 71 NSQTVIRLSKKASTRQLYEKVCKLRGIEQE---------------KARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI 135 (825)
Q Consensus 71 ~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~---------------~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~ 135 (825)
.....+.+...+||.+|++++.+.++++++ ..||. |.+ ..|.+.++||.++++..+..|
T Consensus 17 g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li-~~G-----k~L~dD~~tL~dygI~~g~~l 90 (105)
T 1v2y_A 17 GEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLT-SAG-----EKLTEDRKKLRDYGIRNRDEV 90 (105)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEE-SSS-----CEECCSSSBHHHHTCCSSEEE
T ss_pred CCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEE-eCC-----cCccCCcCCHHHcCCCCCCEE
Confidence 344567889999999999999999988752 45666 332 456567789999999999888
Q ss_pred EEEEEec
Q 003370 136 LLEVQVD 142 (825)
Q Consensus 136 ~~E~~~~ 142 (825)
.+=.+..
T Consensus 91 ~lv~~lr 97 (105)
T 1v2y_A 91 SFIKKLG 97 (105)
T ss_dssp EEEECSC
T ss_pred EEEehhc
Confidence 7776643
No 78
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=89.71 E-value=0.3 Score=41.43 Aligned_cols=61 Identities=25% Similarity=0.352 Sum_probs=47.1
Q ss_pred EEE-eCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccC-ccCccCCHHHHhccCCCeEEEE
Q 003370 75 VIR-LSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSP-LDVSDQTLDDAMLQMDQDILLE 138 (825)
Q Consensus 75 ~~~-~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~-l~~~~~tl~~~~~~~~~~~~~E 138 (825)
.+. +...+||.+|+.++.+..+++++..||-. +.... .+ +.+.++||.++||..|..|.++
T Consensus 13 ~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~--~~p~k-~l~l~~~~~tL~~~gl~~g~~l~v~ 75 (86)
T 2kzr_A 13 LLQGLSSRTRLRELQGQIAAITGIAPGSQRILV--GYPPE-CLDLSDRDITLGDLPIQSGDMLIVE 75 (86)
T ss_dssp EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEE--SSCCC-CCCCCCSSCBTTTSSCCTTCEEECC
T ss_pred EeeecCCCCCHHHHHHHHHHHhCCCccceEEEe--CCCCc-ccccCCCCCCHHHcCCCCCCEEEEE
Confidence 466 88899999999999999999988888753 21111 22 2346789999999999888877
No 79
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=89.56 E-value=0.66 Score=37.90 Aligned_cols=59 Identities=15% Similarity=0.296 Sum_probs=47.8
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeE
Q 003370 70 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI 135 (825)
Q Consensus 70 ~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~ 135 (825)
+.....+.+.+..+++.|+++.|+..++++..+|++. .+ ..| ..++|++++++.++..|
T Consensus 10 ~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f-dG-----~~l-~~~~Tp~~l~medgD~I 68 (72)
T 1wm3_A 10 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF-DG-----QPI-NETDTPAQLEMEDEDTI 68 (72)
T ss_dssp TSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEE-TT-----EEC-CTTCCTTTTTCCTTEEE
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEE-CC-----EEc-CCCCCHHHcCCCCCCEE
Confidence 3445678999999999999999999999999999983 43 334 36689999999887654
No 80
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=89.55 E-value=1.1 Score=42.31 Aligned_cols=76 Identities=12% Similarity=0.242 Sum_probs=58.2
Q ss_pred ccceEEeec-cCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEE
Q 003370 60 XLCLKLIDS-RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 138 (825)
Q Consensus 60 P~~l~l~~~-~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E 138 (825)
|-.++|... .+.....+.++..+||.+|++++....++++++.||. |.+ ..|. .+.||.++++..+..|.+-
T Consensus 79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~-~~G-----~~L~-d~~tL~~y~i~~g~~l~l~ 151 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT-FEG-----KPLE-DQLPLGEYGLKPLSTVFMN 151 (159)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEE-ETT-----EECC-TTSBGGGGTCCTTCEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEE-ECC-----eecC-CCCCHHHcCCCCCCEEEEE
Confidence 444555543 2334567889999999999999999999999999987 332 4554 4789999999999988887
Q ss_pred EEec
Q 003370 139 VQVD 142 (825)
Q Consensus 139 ~~~~ 142 (825)
++..
T Consensus 152 ~rl~ 155 (159)
T 3rt3_B 152 LRLR 155 (159)
T ss_dssp ECCC
T ss_pred EecC
Confidence 7753
No 81
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=89.54 E-value=0.67 Score=40.96 Aligned_cols=63 Identities=11% Similarity=0.187 Sum_probs=51.5
Q ss_pred CceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEe
Q 003370 72 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 141 (825)
Q Consensus 72 ~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~ 141 (825)
....+.++..+||.+|++++....+++++..||.. . + ..|. .++||.++++..+..|.+-++.
T Consensus 34 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~-~----G-k~L~-D~~tL~~ygI~~g~ti~lv~~~ 96 (106)
T 1ttn_A 34 KDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFF-S----G-RPLT-DKMKFEELKIPKDYVVQVIVSQ 96 (106)
T ss_dssp EEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEE-T----T-EECC-TTSHHHHCCCSSSCEEEEECCC
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEE-C----C-EECC-CCCcHHHcCCCCCCEEEEEEeC
Confidence 44568899999999999999999999999999983 2 2 3454 5789999999999888777543
No 82
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=89.37 E-value=1 Score=43.31 Aligned_cols=67 Identities=16% Similarity=0.346 Sum_probs=54.3
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEecCc
Q 003370 71 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDNG 144 (825)
Q Consensus 71 ~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~~~~ 144 (825)
.....+.++..+||.+|++++....++++++-||. |.+ ..|. .+.||.++++..+..|.+-++..+.
T Consensus 30 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~-~~g-----~~L~-d~~tL~~~~i~~~~~l~l~~~~~gg 96 (172)
T 3u30_A 30 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLSDYNIQKESTLHLVLRLRGG 96 (172)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ETT-----EECC-TTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE-ECC-----cccc-ccCCHhHcCCcccceeeeeeccccc
Confidence 34457889999999999999999999999999988 332 3454 5789999999999988888775543
No 83
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=89.30 E-value=0.26 Score=41.37 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=46.7
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEE
Q 003370 73 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 138 (825)
Q Consensus 73 ~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E 138 (825)
...+.++..+|+.+|++++.+.++++.+...|..-+ ..+. .+....+.+|.++||..|+.|.++
T Consensus 15 ~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~-~p~~-~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 15 VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINR-NKTG-EITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSC-CGGG-GSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecC-CCCC-cccCCCCCCHHHcCCCCCCEEEEe
Confidence 345668899999999999999999987665443212 2223 443447889999999999888776
No 84
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=88.88 E-value=1.2 Score=42.92 Aligned_cols=67 Identities=16% Similarity=0.300 Sum_probs=54.0
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEecCc
Q 003370 71 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDNG 144 (825)
Q Consensus 71 ~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~~~~ 144 (825)
.....+.+...+||.+|++++....++++++-||.- .+ ..|. .++||.++++..+..|.+-++..|+
T Consensus 10 Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~-~G-----k~L~-D~~tL~~y~I~~gstI~Lvlrl~GG 76 (169)
T 3l0w_B 10 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF-AG-----KQLE-DGRTLSDYNIQKESTLHLVLRLRGG 76 (169)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEE-TT-----EECC-TTSBGGGGTCCTTCEEEEEECCCC-
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEE-CC-----cccc-CcCcHHHcCCCCCCEEEEEEEeccc
Confidence 344578899999999999999999999999999873 32 3454 5789999999999988888875443
No 85
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=88.78 E-value=0.71 Score=40.93 Aligned_cols=67 Identities=24% Similarity=0.288 Sum_probs=51.6
Q ss_pred cceEEeeccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEE
Q 003370 61 LCLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDIL 136 (825)
Q Consensus 61 ~~l~l~~~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~ 136 (825)
+.|+|. .+.....+.+.+.++++.|++..|+..+++...+|++. .+ ..| ..++|.+++++.++..|-
T Consensus 32 I~IkV~--~~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~F-dG-----~rl-~~~~Tp~dl~medgD~Id 98 (106)
T 2eke_C 32 INLKVS--DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY-DG-----IRI-QADQTPEDLDMEDNDIIE 98 (106)
T ss_dssp EEEEEE--CSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TT-----EEC-CTTCCTTTTTCCTTEEEE
T ss_pred EEEEEe--cCCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEE-CC-----eEc-CCCCCHHHcCCCCCCEEE
Confidence 344443 34445678999999999999999999999999999993 43 334 367899999999887543
No 86
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=88.63 E-value=0.67 Score=42.34 Aligned_cols=69 Identities=22% Similarity=0.230 Sum_probs=52.8
Q ss_pred ccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCc--cCccCCHHHHhccCCCeEEEEEEe
Q 003370 68 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPL--DVSDQTLDDAMLQMDQDILLEVQV 141 (825)
Q Consensus 68 ~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l--~~~~~tl~~~~~~~~~~~~~E~~~ 141 (825)
+++......+|...+||.+|++.|... +.....++|.--+.. ..| .+.++||+++||.....|++|-..
T Consensus 50 lPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPr----k~l~~~d~~~TL~e~gL~psa~Liv~~~d 120 (124)
T 1wj4_A 50 YPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPR----RKLSHLDYDITLQEAGLCPQETVFVQESG 120 (124)
T ss_dssp CTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSC----CEETSSCSSSCTTTTTCCSSBCCEEEECC
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCC----cCCccCCCCCCHHHCCCCCceEEEEEEcc
Confidence 577777889999999999999999776 666667777742221 223 467899999999998888888544
No 87
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=88.50 E-value=0.77 Score=39.25 Aligned_cols=60 Identities=18% Similarity=0.334 Sum_probs=46.9
Q ss_pred eEE-EeCccccHHHHHHHHHHHhCCCCcceEEEEe-ccCcccccCccCccCCHHHHhccCCCeEEEE
Q 003370 74 TVI-RLSKKASTRQLYEKVCKLRGIEQEKARIWDY-FNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 138 (825)
Q Consensus 74 ~~~-~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~-~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E 138 (825)
..+ .+...+||.+|++++.+..++++++-||... + +. ..|. .+.+|.++++..+..|++-
T Consensus 19 ~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~---~G-k~L~-D~~~L~~~~i~~g~~l~l~ 80 (90)
T 1v5t_A 19 YSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKV---KG-KPAE-NDVKLGALKLKPNTKIMMM 80 (90)
T ss_dssp EEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEE---TT-EECC-TTSBHHHHTCCTTEEEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeecc---CC-cCcC-CCCCHHHcCCCCCCEEEEE
Confidence 456 6788899999999999999999999888731 2 12 3454 4689999999998877664
No 88
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=87.90 E-value=1 Score=38.91 Aligned_cols=59 Identities=14% Similarity=0.301 Sum_probs=48.1
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEE
Q 003370 71 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDIL 136 (825)
Q Consensus 71 ~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~ 136 (825)
.....+.+.+.++++.|+++.|+..+++++++|+. |.+ ..| ..++|++++++.++..|=
T Consensus 17 g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~-FdG-----~~l-~~~~Tp~dl~medgD~Id 75 (94)
T 2io1_B 17 GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR-FDG-----QPI-NETDTPAQLEMEDEDTID 75 (94)
T ss_dssp SCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE-ETT-----EEC-CTTCCTTTTTCCTTCEEE
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEE-ECC-----EEc-CCCCCHHHcCCCCCCEEE
Confidence 34567889999999999999999999999999998 343 334 366899999999988543
No 89
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=87.49 E-value=1.4 Score=37.91 Aligned_cols=59 Identities=14% Similarity=0.301 Sum_probs=47.9
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEE
Q 003370 71 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDIL 136 (825)
Q Consensus 71 ~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~ 136 (825)
.....+.+.+..++..|++..|+..+++++.+|++ |.+ ..| ..++|++++++.++..|-
T Consensus 27 g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~-fdG-----~~l-~~~~Tp~dl~medgD~Id 85 (93)
T 2d07_B 27 GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR-FDG-----QPI-NETDTPAQLEMEDEDTID 85 (93)
T ss_dssp SCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEE-ETT-----EEC-CTTCCTTTTTCCTTEEEE
T ss_pred CCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEE-ECC-----EEc-CCCCCHHHcCCCCCCEEE
Confidence 34567889999999999999999999999999998 343 334 367899999999887543
No 90
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=87.16 E-value=1.9 Score=38.49 Aligned_cols=67 Identities=19% Similarity=0.476 Sum_probs=51.3
Q ss_pred cceEEeeccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeE
Q 003370 61 LCLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI 135 (825)
Q Consensus 61 ~~l~l~~~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~ 135 (825)
+.|+|.- .+.....+.+.+..+++.|++..|+..+++++.+|++ |.+ ..| ..++|++++++.++..|
T Consensus 27 I~IkVk~-~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfi-FdG-----~~L-~~~~Tp~dl~mEDgD~I 93 (110)
T 2k8h_A 27 VAVKVVN-ADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFL-FDG-----TPI-DETKTPEELGMEDDDVI 93 (110)
T ss_dssp EEEEEEE-TTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEE-SSS-----CBC-CSSSHHHHHHCSSEEEE
T ss_pred EEEEEEC-CCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEE-ECC-----EEc-CCCCCHHHcCCCCCCEE
Confidence 3444432 3445678999999999999999999999999999998 343 334 36789999999987654
No 91
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=86.97 E-value=0.58 Score=41.52 Aligned_cols=66 Identities=8% Similarity=0.071 Sum_probs=49.6
Q ss_pred eEEEeC-ccccHHHHHHHHHHHhCCCCcceEEEEeccCc---c-ccc--Cc---cCccCCHHHHhccCCCeEEEEEE
Q 003370 74 TVIRLS-KKASTRQLYEKVCKLRGIEQEKARIWDYFNKQ---R-STS--PL---DVSDQTLDDAMLQMDQDILLEVQ 140 (825)
Q Consensus 74 ~~~~~S-k~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~---~-~~~--~l---~~~~~tl~~~~~~~~~~~~~E~~ 140 (825)
..+.+. ..+||.+|++++...++++++.-||.. .+.. + ... .| .+.++||.++++..+..|.|...
T Consensus 19 ~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~-~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G~~L~l~~~ 94 (107)
T 1wf9_A 19 ERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLST-NRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSMVYLAYE 94 (107)
T ss_dssp EEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBS-SGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCEEECCCS
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEE-CCccccccCccccccccccCCCCCCHHHCCCCCCCEEEEEeC
Confidence 357788 899999999999999999999888863 3220 0 000 22 46788999999999988887743
No 92
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=86.78 E-value=2.4 Score=36.20 Aligned_cols=61 Identities=16% Similarity=0.082 Sum_probs=48.0
Q ss_pred eEEEeCccccHHHHHHHHHHHh--CCCCcceEEEEeccCcccccCccCccCCHHHH--hccCCCeEEEEEEe
Q 003370 74 TVIRLSKKASTRQLYEKVCKLR--GIEQEKARIWDYFNKQRSTSPLDVSDQTLDDA--MLQMDQDILLEVQV 141 (825)
Q Consensus 74 ~~~~~Sk~~ti~~L~~~v~~~~--~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~--~~~~~~~~~~E~~~ 141 (825)
..+.+...+||.+|++++.... ++++++.||.. . . ..|. .++||.++ ++..+..|.+=++.
T Consensus 22 ~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~-~----G-k~L~-D~~tL~~~~~~i~~~~~i~lv~~~ 86 (93)
T 1wgd_A 22 LELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIY-S----G-KLLL-DHQCLRDLLPKQEKRHVLHLVCNV 86 (93)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEE-T----T-EECC-SSSCHHHHSCSSSCSEEEEEECCC
T ss_pred EEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEE-C----C-EECc-CcCCHHHHhcCCCCCCEEEEEeCC
Confidence 4556679999999999999998 99999999973 2 2 4564 46799999 99888777665543
No 93
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=86.62 E-value=1.6 Score=38.57 Aligned_cols=60 Identities=15% Similarity=0.322 Sum_probs=48.4
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEE
Q 003370 70 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDIL 136 (825)
Q Consensus 70 ~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~ 136 (825)
+.....+.+.+..++..|++..|+..+++++.+|++ |.+ ..| ..++|++++++.++..|-
T Consensus 33 ~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~-FdG-----~~l-~~~~Tp~dl~medgD~Id 92 (104)
T 1wz0_A 33 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR-FDG-----QPI-NETDTPAQLEMEDEDTID 92 (104)
T ss_dssp SSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEE-SSS-----SBC-CTTSCTTTTTCCTTEEEE
T ss_pred CCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEE-ECC-----EEc-CCCCCHHHcCCCCCCEEE
Confidence 334567899999999999999999999999999998 333 334 367899999999876543
No 94
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=86.61 E-value=1.8 Score=40.30 Aligned_cols=65 Identities=15% Similarity=0.321 Sum_probs=52.9
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEec
Q 003370 71 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVD 142 (825)
Q Consensus 71 ~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~~ 142 (825)
.....+.++..+||.+|++++.+..+++++..||. |. . ..|. .+.||.++++..+..|.+-++..
T Consensus 86 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~-~~----g-~~L~-d~~tL~~~~i~~~~~i~l~~r~~ 150 (152)
T 3b08_A 86 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FA----G-KQLE-DGRTLSDYNIQKESTLHLVLRLR 150 (152)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ET----T-EECC-TTSBTGGGTCCTTCEEEEEECCC
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEE-EC----C-EECC-CCCCHHHcCCCCCCEEEEEEecC
Confidence 34567889999999999999999999999999987 33 2 3454 57899999999999888877653
No 95
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=86.57 E-value=2.1 Score=40.46 Aligned_cols=65 Identities=18% Similarity=0.175 Sum_probs=52.9
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEE
Q 003370 71 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 140 (825)
Q Consensus 71 ~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~ 140 (825)
....++.++..+||.+|++++....++++++-||..|.+ + ..| +.+.||.++++..+..|.+-++
T Consensus 12 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~---g-~~L-~d~~tL~~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 12 GNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPS---G-VAL-QDRVPLASQGLGPGSTVLLVVD 76 (159)
T ss_dssp SCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETT---C-CBC-CTTSCGGGGTCCTTCEEEEEEC
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCC---C-CCC-CCCCCHHHcCCCCCCEEEEEcc
Confidence 344578899999999999999999999999988874411 1 345 4678999999999998888776
No 96
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=85.32 E-value=2 Score=38.58 Aligned_cols=69 Identities=16% Similarity=0.216 Sum_probs=52.2
Q ss_pred cceEEeecc-CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEE
Q 003370 61 LCLKLIDSR-DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDIL 136 (825)
Q Consensus 61 ~~l~l~~~~-~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~ 136 (825)
..+.|-+.. +.....+.+.+..++..|++..|+..+++...+|+|. .+ ..| ..+.|.+++++.++..|=
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlF-DG-----~rI-~~~~TP~dL~MEDgD~Id 108 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EG-----QRI-ADNHTPKELGMEEEDVIE 108 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEE-TT-----EEC-CTTCCTTTTTCCTTCEEE
T ss_pred CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEE-CC-----eEC-CCCCCHHHcCCCCCCEEE
Confidence 344444333 3445678999999999999999999999999999993 43 333 357899999999887643
No 97
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=85.05 E-value=0.7 Score=40.12 Aligned_cols=59 Identities=10% Similarity=0.217 Sum_probs=46.8
Q ss_pred Cce-EEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEE
Q 003370 72 SQT-VIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 138 (825)
Q Consensus 72 ~~~-~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E 138 (825)
... .+.+...+||.+|++++....++++++-||. |. . ..|.+ + +|.++++..+..|++-
T Consensus 17 ~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi-~~----G-k~L~D-~-tL~~~~I~~g~~i~l~ 76 (96)
T 1wgg_A 17 EKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVM-VK----G-GTLKD-D-DWGNIKMKNGMTVLMM 76 (96)
T ss_dssp EEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCE-ET----T-EECCS-S-CCCSCCCCSSCEEECC
T ss_pred EEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE-EC----C-cCCCC-C-CHHHCCCCCCCEEEEE
Confidence 344 4778889999999999999999999988887 32 2 45654 4 9999999988877763
No 98
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=84.34 E-value=1.6 Score=37.17 Aligned_cols=56 Identities=11% Similarity=0.164 Sum_probs=44.6
Q ss_pred EeCccccHHHHHHHH-HHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhc-cCCCeEEEEE
Q 003370 77 RLSKKASTRQLYEKV-CKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAML-QMDQDILLEV 139 (825)
Q Consensus 77 ~~Sk~~ti~~L~~~v-~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~-~~~~~~~~E~ 139 (825)
.++..+||.+|++++ ....++++++.||. |.+ ..|. .+.||.++++ ..+..|.+-.
T Consensus 19 ~v~~~~TV~~lK~~I~~~~~gip~~~QrLi-~~G-----k~L~-D~~tL~~y~I~~~~stl~v~~ 76 (87)
T 2lxa_A 19 DFSPSDTILQIKQHLISEEKASHISEIKLL-LKG-----KVLH-DNLFLSDLKVTPANSTITVMI 76 (87)
T ss_dssp ECCTTCBHHHHHHHHHHTTSCSSSTTEEEE-ETT-----EECC-TTCBHHHHCCCGGGCEEEEEE
T ss_pred cCCCCCcHHHHHHHHHHHhcCCChHHEEEE-ECC-----EECc-CcCCHHHcCCCCCCCEEEEEc
Confidence 466999999999999 88889999999998 332 4554 5689999999 5777766654
No 99
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=84.25 E-value=2.7 Score=37.07 Aligned_cols=53 Identities=19% Similarity=0.145 Sum_probs=42.9
Q ss_pred cccHHHHHHHHHHHh--CCCCcc-eEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEE
Q 003370 81 KASTRQLYEKVCKLR--GIEQEK-ARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 140 (825)
Q Consensus 81 ~~ti~~L~~~v~~~~--~~~~~~-~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~ 140 (825)
.+||.+|++++.... ++++++ .||. |.+ ..|. .++||.++++..+..|.+-++
T Consensus 44 ~~TV~~LK~~i~~~~~~gip~~~~qrLi-~~G-----k~L~-D~~tL~~y~i~~g~~i~lv~~ 99 (107)
T 1x1m_A 44 GYSISFLKQLIAGKLQESVPDPELIDLI-YCG-----RKLK-DDQTLDFYGIQPGSTVHVLRK 99 (107)
T ss_dssp CCBHHHHHHHHHHHCTTTCCCSSSEEEE-ETT-----EECC-TTCBHHHHTCCTTCEEEEEES
T ss_pred cCCHHHHHHHHHHHhccCCChhhcEEEE-ECC-----eECC-CCCcHHHcCCCCCCEEEEEeC
Confidence 499999999999999 999999 9996 332 3454 568999999999888776543
No 100
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=83.80 E-value=3.7 Score=35.63 Aligned_cols=56 Identities=14% Similarity=0.142 Sum_probs=46.2
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeE
Q 003370 73 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI 135 (825)
Q Consensus 73 ~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~ 135 (825)
...+.+.+..+++.|++.-|+..+++...+|++. .+ ..+ ..++|.+++++.++..|
T Consensus 38 ~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~F-DG-----~rI-~~~~TP~dLdMEDgD~I 93 (97)
T 2jxx_A 38 TLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFF-DG-----TKL-SGRELPADLGMESGDLI 93 (97)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEE-TT-----EEC-CSCSCHHHHTCCTTEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE-CC-----EEc-CCCCCHHHcCCCCCCEE
Confidence 4678899999999999999999999999999983 43 233 46789999999887654
No 101
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=83.80 E-value=2.8 Score=38.91 Aligned_cols=66 Identities=15% Similarity=0.270 Sum_probs=53.1
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEecC
Q 003370 71 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDN 143 (825)
Q Consensus 71 ~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~~~ 143 (825)
.....+.++..+||.+|++++....+++++..||.. . . ..|. .+.||.++++..+..|.+..+..+
T Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~-~----g-~~L~-d~~tL~~~~i~~~~~l~l~~~~~~ 75 (152)
T 3b08_A 10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-A----G-KQLE-DGRTLSDYNIQKESTLHLVLRLRG 75 (152)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE-T----T-EECC-TTSBTGGGTCCTTCEEEEEECCTT
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEE-C----C-eECc-CcccHHHhccCCCCeeEEEeeccc
Confidence 344578899999999999999999999999998873 2 2 3454 578999999999998888776543
No 102
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=83.68 E-value=2.8 Score=34.63 Aligned_cols=61 Identities=11% Similarity=0.207 Sum_probs=49.7
Q ss_pred eccCCCceEEEeCccccHHHHHHHHHHHhCCCCc-ceEEEEeccCcccccCccCccCCHHHHhccCCCe
Q 003370 67 DSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQE-KARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQD 134 (825)
Q Consensus 67 ~~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~-~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~ 134 (825)
..+++....+.+....++++|.+.=|+..+|+.+ .+|+- |.+ ..| ++++|++|+++.++..
T Consensus 15 ~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~Irll-FDG-----dRL-dp~~tp~DlemeD~D~ 76 (82)
T 3goe_A 15 RSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLE-FEG-----EWL-DPNDQVQSTELEDEDQ 76 (82)
T ss_dssp EESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEE-ETT-----EEC-CTTSBGGGSSCCTTCE
T ss_pred hccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEE-EcC-----ccc-CccCChhhhCCcCCce
Confidence 3466667789999999999999999999999988 78886 343 444 4788999999988764
No 103
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=83.14 E-value=1.4 Score=38.38 Aligned_cols=59 Identities=10% Similarity=0.119 Sum_probs=46.6
Q ss_pred EEEeCccccHHHHHHHH-HHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhc-cCCCeEEEEEE
Q 003370 75 VIRLSKKASTRQLYEKV-CKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAML-QMDQDILLEVQ 140 (825)
Q Consensus 75 ~~~~Sk~~ti~~L~~~v-~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~-~~~~~~~~E~~ 140 (825)
.+.++..+||.+|++++ ....++++++.||.. . + ..|. .+.||.++++ ..+..|.+=++
T Consensus 35 ~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~-~----G-k~L~-D~~tL~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 35 EHDFSPSDTILQIKQHLISEEKASHISEIKLLL-K----G-KVLH-DNLFLSDLKVTPANSTITVMIK 95 (98)
T ss_dssp EEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEE-T----T-EEEC-TTCBGGGSCCBTTBCEEEEEEC
T ss_pred EEecCCCChHHHHHHHHHHHhcCCChhhEEEEE-C----C-EECc-CcCCHHHcCcCCCCCEEEEEEe
Confidence 34677999999999999 777799999999883 3 2 4554 5689999999 88887776543
No 104
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=82.82 E-value=2.5 Score=36.15 Aligned_cols=60 Identities=12% Similarity=0.069 Sum_probs=46.1
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEe
Q 003370 73 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 141 (825)
Q Consensus 73 ~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~ 141 (825)
...+.+...+||.+|++++.... +++.||. |. + ..|.+.++||.++++..+..|.+-++.
T Consensus 19 ~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi-~~----G-k~L~D~~~tL~~y~i~~g~~i~l~~~~ 78 (95)
T 1wia_A 19 EELAVARPEDTVGTLKSKYFPGQ---ESQMKLI-YQ----G-RLLQDPARTLSSLNITNNCVIHCHRSP 78 (95)
T ss_dssp EEEEEECSSSBHHHHHHHHSSST---TTTCEEE-ET----T-EECCCSSCBTTTTTCCTTEEEEEECCC
T ss_pred EEEEEECCCCcHHHHHHHHHhhC---cCcEEEE-EC----C-EEccCCcCCHHHcCCCCCCEEEEEECC
Confidence 35678899999999999998776 6778886 22 2 466655589999999998877776543
No 105
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=82.90 E-value=0.27 Score=40.33 Aligned_cols=61 Identities=18% Similarity=0.262 Sum_probs=47.8
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEE
Q 003370 73 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 140 (825)
Q Consensus 73 ~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~ 140 (825)
...+.++..+||.+|++++.+..+++++..||. |. + ..|. .+.||.++++..+..|.+=++
T Consensus 12 ~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~-~~----g-k~L~-d~~tL~~~~i~~g~~i~l~~r 72 (76)
T 3b1l_X 12 GFPVEVDSDTSILQLKEVVAKQQGVPADQLRVI-FA----G-KELP-NHLTVQNCDLEQQSIVHIVQR 72 (76)
Confidence 345778889999999999999999999988886 22 2 3454 568999999998877665544
No 106
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=81.52 E-value=0.29 Score=44.97 Aligned_cols=64 Identities=16% Similarity=0.326 Sum_probs=0.0
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEecC
Q 003370 73 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDN 143 (825)
Q Consensus 73 ~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~~~ 143 (825)
...+.++..+||.+|++++.+..+++++..||. |.+ ..|. .+.||.++++.++..|.+-++..|
T Consensus 12 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~G-----k~L~-D~~tL~~~~I~~gsti~l~~rl~G 75 (128)
T 3u5e_m 12 TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLSDYNIQKESTLHLVLRLRG 75 (128)
T ss_dssp -----------------------------------------------------------------------
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEE-ECC-----EECC-CCCchhhhccCCCCEEEEEEEcCC
Confidence 346778899999999999999999999988887 322 3454 578999999999988777777544
No 107
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=80.91 E-value=2.3 Score=40.84 Aligned_cols=64 Identities=16% Similarity=0.328 Sum_probs=50.4
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEe
Q 003370 71 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 141 (825)
Q Consensus 71 ~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~ 141 (825)
.....+.++..+||.+|++++....++++++-||. +. . ..|. .+.||.++++..+..|.+-++.
T Consensus 106 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~-~~----g-~~L~-D~~tL~~y~i~~g~tl~l~~rl 169 (172)
T 3u30_A 106 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FA----G-KQLE-DGRTLSDYNIQKESTLHLVLRL 169 (172)
T ss_dssp CCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEE-ET----T-EECC-TTSBSGGGTCCTTCEEEECC--
T ss_pred CcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEE-EC----C-ccCC-CCCcHHHhCCCCCCEEEEEEec
Confidence 34457889999999999999999999999988886 33 2 3454 5789999999999887775553
No 108
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.71 E-value=4.2 Score=35.53 Aligned_cols=59 Identities=8% Similarity=0.123 Sum_probs=45.1
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEE
Q 003370 73 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 137 (825)
Q Consensus 73 ~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~ 137 (825)
..++.+...+||.+|+.++....+|++++-||-. +.. . . | ..+.+|.++++..+..|.+
T Consensus 20 ~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~-~~~--g-k-L-~D~~tLs~~~I~~gstL~l 78 (100)
T 2dzm_A 20 NVDVVLEDTCTVGEIKQILENELQIPVSKMLLKG-WKT--G-D-V-EDSTVLKSLHLPKNNSLYV 78 (100)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEEC-CSS--S-C-C-CTTSBHHHHCCCSEEEEEE
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEc-cCC--C-C-C-CCcCCHHHcCCCCCCEEEE
Confidence 3456778889999999999999999999877732 211 2 2 4 3578999999998876655
No 109
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=80.06 E-value=5.2 Score=42.27 Aligned_cols=73 Identities=14% Similarity=0.239 Sum_probs=54.1
Q ss_pred cceEEeecc-CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEE
Q 003370 61 LCLKLIDSR-DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEV 139 (825)
Q Consensus 61 ~~l~l~~~~-~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~ 139 (825)
..++|.+.. ......+.++..+||.+|++++....++++++.||.. . . ..|. .++||.++++..+..|.|-+
T Consensus 232 ~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~-~----G-k~L~-D~~TLsdygI~~gstL~Lvl 304 (307)
T 3ai5_A 232 GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-A----G-KQLE-DGRTLSDYNIQKESTLHLVL 304 (307)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE-T----T-EECC-TTSBTGGGTCCTTCEEEEEC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEe-C----C-eecC-CCCCHHHcCCCCCCEEEEEE
Confidence 344444422 2334578899999999999999999999999999873 2 2 3454 57899999999998877654
Q ss_pred E
Q 003370 140 Q 140 (825)
Q Consensus 140 ~ 140 (825)
+
T Consensus 305 R 305 (307)
T 3ai5_A 305 R 305 (307)
T ss_dssp -
T ss_pred e
Confidence 3
No 110
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=79.54 E-value=3.7 Score=40.55 Aligned_cols=68 Identities=24% Similarity=0.278 Sum_probs=53.2
Q ss_pred cceEEeeccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEE
Q 003370 61 LCLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 137 (825)
Q Consensus 61 ~~l~l~~~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~ 137 (825)
+.|+|. .+.....+.+.+..+++.|++..|+..+++...+|++. .+ ..+ ..++|.+++++.++..|-+
T Consensus 30 I~LkV~--~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~F-dG-----~rI-~~~~TP~dL~MEdgD~Idv 97 (200)
T 3pge_A 30 INLKVS--DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY-DG-----IRI-QADQTPEDLDMEDNDIIEA 97 (200)
T ss_dssp EEEEEE--CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEE-TT-----EEC-CTTCCTTTTTCCTTEEEEE
T ss_pred EEEEEe--cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEE-CC-----EEc-CCCCCHHHcCCCCCCEEEE
Confidence 355663 35556789999999999999999999999999999993 43 233 3678999999999876543
No 111
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=78.79 E-value=4.2 Score=37.14 Aligned_cols=66 Identities=17% Similarity=0.165 Sum_probs=47.8
Q ss_pred ccCCCceEEEeCccccHHHHHHHHHHHhC-CCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEE
Q 003370 68 SRDNSQTVIRLSKKASTRQLYEKVCKLRG-IEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 138 (825)
Q Consensus 68 ~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~-~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E 138 (825)
+++......+|...+||.+|++.|...+. .....++|.--+.. ..+.+.++||+|+||.. ..+|+.
T Consensus 59 lpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPr----k~l~d~~~TL~eagL~p-savl~k 125 (127)
T 1s3s_G 59 LADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPN----KELADENQTLKEANLLN-AVIVQR 125 (127)
T ss_dssp ETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTT----EECCSTTCBHHHHTCSS-CEEEEE
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCC----CCCCCCCCcHHHCCCcC-ceEEEE
Confidence 47777788899999999999999988753 34456777642221 34456789999999987 455544
No 112
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=78.22 E-value=2.5 Score=38.90 Aligned_cols=40 Identities=20% Similarity=0.453 Sum_probs=34.9
Q ss_pred eEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCccc
Q 003370 74 TVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRS 113 (825)
Q Consensus 74 ~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~ 113 (825)
.++.+-|.+|+.+|++.+.+.||++++.+|||.....++.
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~~RqN~ 97 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNG 97 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECCCCBTT
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEeecCCCC
Confidence 4788999999999999999999999999999987654433
No 113
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=76.56 E-value=5.7 Score=34.54 Aligned_cols=56 Identities=13% Similarity=0.092 Sum_probs=42.3
Q ss_pred ceEEEeCccccHHHHHHHHHHHh-CCC-CcceEEEEeccCcccccCccCccCCHHHH--hccCCCeE
Q 003370 73 QTVIRLSKKASTRQLYEKVCKLR-GIE-QEKARIWDYFNKQRSTSPLDVSDQTLDDA--MLQMDQDI 135 (825)
Q Consensus 73 ~~~~~~Sk~~ti~~L~~~v~~~~-~~~-~~~~rlw~~~~~~~~~~~l~~~~~tl~~~--~~~~~~~~ 135 (825)
..++.+...+||.+|++++...+ +++ +++-||. |. + .+|. .++||.++ ++..+..|
T Consensus 37 ~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLI-y~----G-k~L~-D~~tL~~y~~~I~~~~ti 96 (99)
T 2kdb_A 37 DQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLV-YS----G-RLLP-DHLQLKDILRKQDEYHMV 96 (99)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEE-ET----T-EEEC-TTSBTHHHHTTTCSEEEE
T ss_pred EEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEE-EC----C-EECC-CCCCHHHHhcCCCCCCEE
Confidence 35677899999999999999865 455 5888887 33 2 4565 56899999 98876554
No 114
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=76.36 E-value=0.52 Score=44.69 Aligned_cols=64 Identities=16% Similarity=0.326 Sum_probs=0.0
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEecC
Q 003370 73 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDN 143 (825)
Q Consensus 73 ~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~~~ 143 (825)
...+.++..+||.+|++++....++++++.||. |.+ ..|. .+.||.++++.++..|.+-++..|
T Consensus 12 ~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi-~~G-----k~L~-D~~tL~dygI~~gstL~Lvlrl~G 75 (152)
T 3u5c_f 12 TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLSDYNIQKESTLHLVLRLRG 75 (152)
T ss_dssp -----------------------------------------------------------------------
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE-ECC-----EEcc-ccCcHHHcCCCCCCEEEEEeeccC
Confidence 346778899999999999999999999998887 322 3454 568999999999987777776443
No 115
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=76.13 E-value=2.8 Score=40.95 Aligned_cols=66 Identities=23% Similarity=0.283 Sum_probs=52.0
Q ss_pred cceEEeeccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeE
Q 003370 61 LCLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI 135 (825)
Q Consensus 61 ~~l~l~~~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~ 135 (825)
+.|+|- .+.....+.+.+..++..|++.-|+..+++...+|++. .+ ..| ..++|.+++++.++..|
T Consensus 58 InLKVk--~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLF-DG-----qRI-~~ddTPeDLdMEDGDtI 123 (207)
T 3tix_A 58 INLKVS--DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLY-DG-----IEI-QADQTPEDLDMEDNDII 123 (207)
T ss_dssp EEEEEE--CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEE-TT-----EEC-CSSCCTTTTTCCTTEEE
T ss_pred EEEEEe--cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEE-CC-----eec-CCCCCHHHcCCCCCCEE
Confidence 455662 45566789999999999999999999999999999983 33 233 35789999999887654
No 116
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=74.19 E-value=6.4 Score=35.81 Aligned_cols=61 Identities=15% Similarity=0.180 Sum_probs=45.9
Q ss_pred CceEEEeCccccHHHHHHHHHHH------hCC--CCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEE
Q 003370 72 SQTVIRLSKKASTRQLYEKVCKL------RGI--EQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEV 139 (825)
Q Consensus 72 ~~~~~~~Sk~~ti~~L~~~v~~~------~~~--~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~ 139 (825)
...++.+...+||.+|++++... =++ ++++.||. |.+ .+|+ .++||.++++..+..+++.+
T Consensus 28 ~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLI-y~G-----K~Le-D~~TL~~y~I~~~~~~tlhl 96 (125)
T 2gow_A 28 KTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLI-YQG-----RFLH-GNVTLGALKLPFGKTTVMHL 96 (125)
T ss_dssp CEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEE-SSS-----SEEE-SSCBTGGGCCCTTSEEEEEE
T ss_pred CEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEE-ECC-----cCCC-CCCcHHHcCCCCCCceEEEE
Confidence 55688999999999999999983 355 36788886 332 4665 56899999998877555544
No 117
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.97 E-value=9 Score=32.09 Aligned_cols=66 Identities=21% Similarity=0.333 Sum_probs=50.0
Q ss_pred ceEEeeccCCCc-eEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccC
Q 003370 62 CLKLIDSRDNSQ-TVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQM 131 (825)
Q Consensus 62 ~l~l~~~~~~~~-~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~ 131 (825)
.+++.++...++ ..+++|...++.+|+-.+|.--+++++.+-|-. ..+.. +.| +.+++|.|+||..
T Consensus 10 TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~--d~~~~-e~L-dLskSLndlgirE 76 (91)
T 2daj_A 10 TVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLK--DYQSQ-EPL-DLTKSLNDLGLRE 76 (91)
T ss_dssp CEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEES--CSSCC-CBC-CTTSCHHHHTCSE
T ss_pred EEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEec--CCCCC-ccc-chhcchhhhhhhh
Confidence 456666655544 468999999999999999999999999886663 22233 556 5889999999863
No 118
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=69.97 E-value=12 Score=33.62 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=45.5
Q ss_pred CceEEEeCccccHHHHHHHHHHHh------CC--CCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEE
Q 003370 72 SQTVIRLSKKASTRQLYEKVCKLR------GI--EQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEV 139 (825)
Q Consensus 72 ~~~~~~~Sk~~ti~~L~~~v~~~~------~~--~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~ 139 (825)
...++.+...+||.+|++++...+ ++ ++++.||- |.+ .+|. .+.||.++++..+...++.+
T Consensus 27 ~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLI-y~G-----K~Le-D~~TL~~y~I~~~~~~tlhL 95 (116)
T 1wgh_A 27 KTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLI-YQG-----RFLH-GNVTLGALKLPFGKTTVMHL 95 (116)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEE-ETT-----EEEC-SSCBTTTTTCCSSCEEEEEE
T ss_pred CEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEE-ECC-----cCCC-CCCcHHHcCCCCCCceEEEE
Confidence 556789999999999999999843 43 57888886 332 4564 56899999998776555544
No 119
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.12 E-value=4.8 Score=34.12 Aligned_cols=58 Identities=7% Similarity=0.117 Sum_probs=44.5
Q ss_pred EE-EeCccccHHHHHHHHHHH-hCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEE
Q 003370 75 VI-RLSKKASTRQLYEKVCKL-RGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 137 (825)
Q Consensus 75 ~~-~~Sk~~ti~~L~~~v~~~-~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~ 137 (825)
.+ .+...+||.+|++++.+. -+++++.-||-. . ..+ ..|. .+.||.++++..+..|++
T Consensus 26 ~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~-~--~~G-k~L~-D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 26 FLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRL-D--PKG-KSLK-DEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEES-S--TTS-CCCC-TTCBTTTSSCCSEEEEEE
T ss_pred EEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEe-c--CCC-cCcC-CCCCHHHcCCCCCCEEEE
Confidence 56 889999999999999995 689988888752 1 123 4564 468999999988776654
No 120
>1w6v_A Ubiquitin carboxyl-terminal hydrolase 15; UCH, USP, DUB, deubiquitylation, deubiquitinating enzyme, ubiquitin specific protease; NMR {Homo sapiens} SCOP: d.324.1.1
Probab=68.86 E-value=1.3 Score=41.42 Aligned_cols=12 Identities=25% Similarity=0.540 Sum_probs=10.8
Q ss_pred ccCCCeeeeEee
Q 003370 36 VGGPALPRKMIS 47 (825)
Q Consensus 36 ~ggp~I~R~Vi~ 47 (825)
.|||+|+|+||.
T Consensus 129 ~ggp~I~R~vi~ 140 (141)
T 1w6v_A 129 EGQEPIARKVVE 140 (141)
T ss_dssp TTCCCCEEECCC
T ss_pred CCCCceeEeeec
Confidence 499999999996
No 121
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=64.05 E-value=49 Score=28.84 Aligned_cols=75 Identities=11% Similarity=0.240 Sum_probs=53.2
Q ss_pred eEEeeccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEe
Q 003370 63 LKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 141 (825)
Q Consensus 63 l~l~~~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~ 141 (825)
++++ +|+.+...+.+-...|++|-+.++-+.++|.++.+.++.....+.......+.+.-+.. ..+.+|.+|+.+
T Consensus 21 ir~h-LPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~~~~~~~~~~~~i~WdtDi~~---L~geEL~Ve~ld 95 (107)
T 1rrb_A 21 IRVF-LPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLQEHKGKKARLDWNTDAAS---LIGEELQVDFLK 95 (107)
T ss_dssp EEEE-CTTTCCEEEECCTTCBHHHHHHHHHHHHTCCTTTEEEEECCCSCSSSCEECCTTCBHHH---HTTSEEEEEEC-
T ss_pred EEEE-CCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHceeEEccccCCCcccccchhhhhhh---ccCcEEEEEEcc
Confidence 4444 47778888999999999999999999999999999999764332222223234433332 347899999865
No 122
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=62.87 E-value=3.6 Score=34.49 Aligned_cols=66 Identities=11% Similarity=0.178 Sum_probs=49.0
Q ss_pred cCCCceEEEeCccccHHHHHHHHHHHhCCCCcceE-EEEeccCcccccCccCccCCHHHHhccCCCeEEE
Q 003370 69 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKAR-IWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 137 (825)
Q Consensus 69 ~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~r-lw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~ 137 (825)
.......++++..-|+++|.+.+.+.++++..... -| +.-.++. .+| ..+++|.|+++..|..|.+
T Consensus 14 y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~-irv~NK~-~~L-~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 14 YNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHW-IRVVNKD-KVF-SGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp TTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCE-EEEGGGT-EEE-ETTSBTGGGTCCTTCEEEE
T ss_pred cCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCE-EEEecCC-EEE-cCCCEEeeCCcCCCCEEEE
Confidence 34456689999999999999999999999853221 23 2334555 445 4778999999999987765
No 123
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=61.40 E-value=29 Score=29.70 Aligned_cols=73 Identities=14% Similarity=0.177 Sum_probs=51.7
Q ss_pred ceEEeeccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEe
Q 003370 62 CLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 141 (825)
Q Consensus 62 ~l~l~~~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~ 141 (825)
.++++ +|+.+...+.+-...|+++-+.++.+.+++.++.+.++......+. .+-.+.| ++...+.+|.+|+.+
T Consensus 19 ~irvh-LPNqQrT~V~VrpG~tlrdAL~KaLk~R~L~pe~C~Vy~~~~~~~~-~IdWdtD-----i~~L~~eEL~Ve~ld 91 (95)
T 2l05_A 19 IVRVF-LPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYRIQDGEKK-PIGWDTD-----ISWLTGEELHVEVLE 91 (95)
T ss_dssp EEEEE-ETTTEEEEEECCTTCBHHHHHHHHHHHHTCCGGGEEEEEEETTEEE-EECTTSB-----GGGGTTCEEEEEESC
T ss_pred EEEEE-CCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHcEEEEcCCCCcc-ccchhHh-----hhhccCcEEEEEEec
Confidence 34444 4777778899999999999999999999999999988865543333 1212222 223447899999764
No 124
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=61.13 E-value=27 Score=29.99 Aligned_cols=66 Identities=12% Similarity=0.132 Sum_probs=51.4
Q ss_pred cceEEeeccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeE
Q 003370 61 LCLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI 135 (825)
Q Consensus 61 ~~l~l~~~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~ 135 (825)
+.|+|. .+.....+.+.+...++-|++.-|+..+++...+|+- |.+ . .+ ..++|.+++++..+..|
T Consensus 22 IniKV~--~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFl-fDG-~----rI-~~~~TP~~L~meD~DiI 87 (95)
T 2l76_A 22 FPLKIR--CRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLL-FGE-T----EL-SPTATPRTLKLGVADII 87 (95)
T ss_dssp EEEEEE--CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEE-ETT-E----EC-CTTSCHHHHTCCSSCEE
T ss_pred EEEEEE--cCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEE-ECC-c----CC-CCCCCHhHcCCCCCCEE
Confidence 666665 3455667889999999999999999999999999876 333 2 22 46789999999877653
No 125
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=60.04 E-value=10 Score=41.16 Aligned_cols=64 Identities=14% Similarity=0.218 Sum_probs=48.8
Q ss_pred ceEEEeCccccHHHHHHHHHHHh---CCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeE-EEEEEecC
Q 003370 73 QTVIRLSKKASTRQLYEKVCKLR---GIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI-LLEVQVDN 143 (825)
Q Consensus 73 ~~~~~~Sk~~ti~~L~~~v~~~~---~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~-~~E~~~~~ 143 (825)
...+.+...+||.+|++++...+ +++.++.||. |. + ..|. .++||.++++..+..| ++-.+..+
T Consensus 19 ~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLi-y~----G-K~L~-D~~tL~dygI~~gstIv~lv~k~~~ 86 (368)
T 1oqy_A 19 TFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLI-YA----G-KILS-DDVPIRDYRIDEKNFVVVMVTKTKA 86 (368)
T ss_dssp EEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEE-SS----S-SEEC-SSSBTTTTCCCTTSCEEEEEECCCS
T ss_pred EEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEE-EC----C-eecC-CcCCHHHcCCCCCCEEEEEEecCCC
Confidence 34677889999999999999954 5888999986 22 2 4564 4689999999999877 55555543
No 126
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=59.26 E-value=40 Score=27.74 Aligned_cols=73 Identities=12% Similarity=0.267 Sum_probs=49.8
Q ss_pred eEEeeccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEE
Q 003370 63 LKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEV 139 (825)
Q Consensus 63 l~l~~~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~ 139 (825)
++++ +|+.+...+.+-...|+++-+.++.+.+++.++.+.++.....+.......+.+.- ++...+.+|.+|+
T Consensus 4 irvh-LPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~V~~~~~~~~~~~~~i~WdtD---~~~L~~eEl~Ve~ 76 (77)
T 1c1y_B 4 IRVF-LPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLHEHKGKKARLDWNTD---AASLIGEELQVDF 76 (77)
T ss_dssp EEEE-ETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEEEEEGGGSSEEEEECTTSB---GGGGTTCEEEEEE
T ss_pred EEEE-CCCCceEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEEEeccCCCCCccccchhHh---hhhccCceEEEEe
Confidence 3444 37777788999999999999999999999999999888764222221212122222 2233467888885
No 127
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=58.04 E-value=38 Score=28.42 Aligned_cols=72 Identities=15% Similarity=0.285 Sum_probs=51.4
Q ss_pred eEEeeccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEe
Q 003370 63 LKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 141 (825)
Q Consensus 63 l~l~~~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~ 141 (825)
++++ +|+.+...+.+-...|+++-+.++.+.+++.++.+.++......+...-. +.+. +...+.+|.+|+.+
T Consensus 10 irvh-LPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~~~~~~~~~IdW-dtDi-----~~L~~eEL~Ve~ld 81 (86)
T 1wxm_A 10 VKVY-LPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYRLIKGRKTVTAW-DTAI-----APLDGEELIVEVLS 81 (86)
T ss_dssp EEEE-CSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEEEESSSCEEEECS-SSBS-----TTCSSCEEEEEECC
T ss_pred EEEE-CCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEEEcCCCCccccch-hHhh-----hhccCcEEEEEEcc
Confidence 3444 47777788999999999999999999999999999888765433331122 2222 22447799999865
No 128
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=57.31 E-value=38 Score=28.78 Aligned_cols=49 Identities=14% Similarity=0.138 Sum_probs=35.5
Q ss_pred CceeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeE
Q 003370 399 TVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLL 451 (825)
Q Consensus 399 ~~~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~ 451 (825)
.....+.+.|-..+|. .+.+.+..+.++.+|++.+....++++..+-++
T Consensus 18 ~~~~~m~I~Vk~~~g~----~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi 66 (98)
T 4hcn_B 18 FQGRPMQIFVKTLTGK----TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 66 (98)
T ss_dssp ----CCEEEEEETTCC----EEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEE
T ss_pred CCCCeEEEEEEeCCCC----EEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE
Confidence 3445566766666665 367889999999999999999999987665444
No 129
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=55.30 E-value=54 Score=26.52 Aligned_cols=66 Identities=14% Similarity=0.194 Sum_probs=41.9
Q ss_pred eEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeEEEeecceeeEeecCcccccc--cccCCCcEE
Q 003370 404 MTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIV 480 (825)
Q Consensus 404 ~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~k~~~d~~~~~~--~i~~~d~i~ 480 (825)
|.++|-..+|. .+.+.++.+.++.+|++.++...++++...-++ |+.+ .+.|. ..+. .|.+++.|.
T Consensus 4 m~i~vk~~~g~----~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~---~~g~---~L~d~-~tL~~~~i~~~~~l~ 71 (85)
T 3mtn_B 4 MQIFVKTLTGK----TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGK---QLEDG-RTLSDYNIQKWSTLF 71 (85)
T ss_dssp EEEEEECTTSC----EEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE---ETTE---ECCTT-SBTGGGTCCTTCEEE
T ss_pred EEEEEEcCCCC----EEEEEECCCCCHHHHHHHHHHHHCcChHHEEEE---ECCE---ECCCC-CCHHHcCCCCCCEEE
Confidence 44444444443 456788899999999999999999987665444 3443 34432 3343 345555544
No 130
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=54.75 E-value=38 Score=28.32 Aligned_cols=54 Identities=17% Similarity=0.259 Sum_probs=40.2
Q ss_pred CceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHH
Q 003370 72 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDA 127 (825)
Q Consensus 72 ~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~ 127 (825)
....+.+.+.-++.+|.+++++.|.++.+.+.|+ |...... ++....+..+++|
T Consensus 14 ~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~Ls-Yk~~~s~-~~vi~~d~dl~~a 67 (83)
T 1oey_A 14 YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLS-YRPRDSN-ELVPLSEDSMKDA 67 (83)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEE-ECCTTCS-SCEECCTTTHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEE-eeCCCCC-CeeccChHHHHHH
Confidence 3456788999999999999999999998888888 4443333 3323455677777
No 131
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=54.28 E-value=5.2 Score=36.68 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=20.7
Q ss_pred CCcccceecCCCchhHHHHHHHHh
Q 003370 214 KGGLAGLQNLGNTCFMNSALQCLV 237 (825)
Q Consensus 214 ~~g~~GL~NlGNTCYmNSvLQ~L~ 237 (825)
..-+.|+.|.-++|++|++||...
T Consensus 10 kk~fys~pN~hdncWLNtilQLfr 33 (167)
T 1qmy_A 10 KKTFYSRPNNHDNAWLNAILQLFR 33 (167)
T ss_dssp EEECCCCCCSSSCHHHHHHHHHHH
T ss_pred ccccccCCCCCcchHHHHHHHHHH
Confidence 455889999999999999999753
No 132
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=52.62 E-value=90 Score=26.25 Aligned_cols=35 Identities=6% Similarity=-0.187 Sum_probs=29.9
Q ss_pred cceEEEecCCcChHHHHHHHHhhccCCcccceeEE
Q 003370 418 MPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLA 452 (825)
Q Consensus 418 ~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~ 452 (825)
..+.++++...++.+|++.+....|++++.+-+..
T Consensus 19 ~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~ 53 (95)
T 1v6e_A 19 FRSEKRYSRSLTIAEFKCKLELVVGSPASCMELEL 53 (95)
T ss_dssp SCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEE
T ss_pred eeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEE
Confidence 56888999999999999999999999877665544
No 133
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=52.40 E-value=44 Score=28.73 Aligned_cols=56 Identities=11% Similarity=0.226 Sum_probs=38.9
Q ss_pred ceEEEecCCcChHHHHHHHHhhccCCcccceeEEEeecceeeEeecCcccccc--cccCCCcEE
Q 003370 419 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIV 480 (825)
Q Consensus 419 ~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~k~~~d~~~~~~--~i~~~d~i~ 480 (825)
.+.+.|+.+.++.+|++.++...++++..+.++ |+. +.+.|....+. .|.+++.|+
T Consensus 23 ~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~---~~g---k~L~D~~~tL~~ygI~~g~~l~ 80 (102)
T 1v5o_A 23 TFSLQVNPDFELSNFRVLCELESGVPAEEAQIV---YME---QLLTDDHCSLGSYGLKDGDMVV 80 (102)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEE---ETT---EEECCSSSBHHHHTCCTTEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEE---ECC---EECCCCcccHHHCCCCCCCEEE
Confidence 466888999999999999999999987665543 344 34555544444 355565544
No 134
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=51.78 E-value=32 Score=31.24 Aligned_cols=51 Identities=12% Similarity=0.106 Sum_probs=39.0
Q ss_pred EEEeCccccHHHHHHHHHHHh-----CCCC--cceEEEEeccCcccccCccCccCCHHHHhccCC
Q 003370 75 VIRLSKKASTRQLYEKVCKLR-----GIEQ--EKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMD 132 (825)
Q Consensus 75 ~~~~Sk~~ti~~L~~~v~~~~-----~~~~--~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~ 132 (825)
.+.+...+||.+|++++.... ++++ ++.||- |.+ .+|+ .+.||.++++..+
T Consensus 31 ~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLI-y~G-----K~Le-D~~TLsdy~I~~~ 88 (126)
T 1se9_A 31 PKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLI-SAG-----KVLE-NSKTVKDYRSPVS 88 (126)
T ss_dssp EEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEE-ETT-----EECC-TTSBGGGGSCCTT
T ss_pred eeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEE-ECC-----eECc-CCCcHHHcCCCcC
Confidence 588999999999999996543 4664 678885 332 4564 6789999999977
No 135
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=51.71 E-value=42 Score=28.05 Aligned_cols=62 Identities=6% Similarity=-0.199 Sum_probs=40.3
Q ss_pred ceEEEecCCcChHHHHHHHHhhccCCcccceeEEEeecceeeEeecCcccccc--cccCCCcEE
Q 003370 419 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIV 480 (825)
Q Consensus 419 ~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~k~~~d~~~~~~--~i~~~d~i~ 480 (825)
.+.+++++..|+.+|++.+....|++++.+-+...--+..+.-...+....|+ .|.++..|.
T Consensus 16 ~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ih 79 (86)
T 4b6w_A 16 VPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIH 79 (86)
T ss_dssp EEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEE
T ss_pred EEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEE
Confidence 35788999999999999999999999877666544333333322223334444 345555443
No 136
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=50.32 E-value=13 Score=39.38 Aligned_cols=63 Identities=6% Similarity=0.258 Sum_probs=46.9
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEe-ccCcccccCccCccCCHHHHhccCCCeEEEE
Q 003370 71 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDY-FNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 138 (825)
Q Consensus 71 ~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~-~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E 138 (825)
....++.+...+||.+|++++.+..+++++.-||.-. + ++ .+|. .+.||.++++..|..|.+=
T Consensus 14 g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~---~G-k~l~-D~~~L~~~~ik~g~~l~L~ 77 (320)
T 3shq_A 14 GKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKY---KG-KTAA-DNVKISALELKPNFKLMMV 77 (320)
T ss_dssp TEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBS---SS-SBCC-TTSBTTSSCCC--CEEEEE
T ss_pred CEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeeccc---CC-cccC-ccccHHHcCCCCCCEEEEE
Confidence 3345788899999999999999999999998887621 1 22 3554 4679999999999877653
No 137
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=49.13 E-value=81 Score=28.04 Aligned_cols=64 Identities=16% Similarity=0.087 Sum_probs=40.1
Q ss_pred cceEEEecCCcChHHHHHHHHhhccCCcccceeEEEeecceeeEeecCcccccc--cccCCCcEEE
Q 003370 418 MPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVA 481 (825)
Q Consensus 418 ~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~k~~~d~~~~~~--~i~~~d~i~~ 481 (825)
..+.++++...++.+|+..|...+|++++.+-+...-.+.++..-+.++...+. .|.++..|.+
T Consensus 18 ~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihv 83 (122)
T 1t0y_A 18 FPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA 83 (122)
T ss_dssp SCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEE
T ss_pred ccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEE
Confidence 457889999999999999999999998766555443212232212222334443 3455555543
No 138
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=48.98 E-value=63 Score=29.32 Aligned_cols=72 Identities=14% Similarity=0.221 Sum_probs=49.1
Q ss_pred ccCCCceEEEeCccccHHHHHHHHHHHhCCCCc-ceEEEEeccCc--------------------cc------------c
Q 003370 68 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQE-KARIWDYFNKQ--------------------RS------------T 114 (825)
Q Consensus 68 ~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~-~~rlw~~~~~~--------------------~~------------~ 114 (825)
+.+.+..++.+....+|.+++..||+.++|... +.-|=.-.... +. .
T Consensus 18 llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~~dd~~ 97 (128)
T 2kc2_A 18 MLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHTDDEL 97 (128)
T ss_dssp CTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCCCSSSE
T ss_pred cCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhcccCCC
Confidence 467778899999999999999999999999843 33332211100 00 0
Q ss_pred cCccCccCCHHHHhccCCCeEEEEEE
Q 003370 115 SPLDVSDQTLDDAMLQMDQDILLEVQ 140 (825)
Q Consensus 115 ~~l~~~~~tl~~~~~~~~~~~~~E~~ 140 (825)
..| +.++||-+.|+..+..++|=-+
T Consensus 98 ~WL-D~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 98 NWL-DHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp EEE-CSSSCHHHHTCCTTSEEEEEES
T ss_pred Ccc-cCCCcHHHcCCCCCCEEEEEEE
Confidence 223 4578898889988888877543
No 139
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=47.89 E-value=21 Score=30.39 Aligned_cols=63 Identities=10% Similarity=0.136 Sum_probs=46.1
Q ss_pred cCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEE
Q 003370 69 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 138 (825)
Q Consensus 69 ~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E 138 (825)
++....++.++...++.++++.+|+.|++++++..|-. .+ ..+ +.+..+--+||-.+..+-+.
T Consensus 17 ~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh---~~---k~l-DLSlpfRlsgLpnnAkLELv 79 (90)
T 2al3_A 17 PNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKF---QR---TVL-DLSLQWRFANLPNNAKLEMV 79 (90)
T ss_dssp TTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEE---TT---EEE-SSSCBHHHHCCCSSCEEEEE
T ss_pred CCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEe---CC---Eec-cccceeEecCCCCCCEEEEE
Confidence 34445678899999999999999999999988766552 11 233 46667777788877665554
No 140
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=46.20 E-value=77 Score=26.42 Aligned_cols=66 Identities=12% Similarity=0.199 Sum_probs=41.3
Q ss_pred EEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeEEEeecceeeEeecCcccccc--cccCCCcEEE
Q 003370 405 TVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVA 481 (825)
Q Consensus 405 ~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~k~~~d~~~~~~--~i~~~d~i~~ 481 (825)
.++|-..+|. .+.+.++.+.++.+|++.++...++++...-++ |+.+. +.|. ..+. .|.+++.|++
T Consensus 3 ~i~vk~~~g~----~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~---~~G~~---L~d~-~tL~~~~i~~~~~i~l 70 (96)
T 3k9o_B 3 QIFVKTLTGK----TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGKQ---LEDG-RTLSDYNIQKESTLHL 70 (96)
T ss_dssp EEEEEETTCC----EEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTEE---CCTT-SBTGGGTCCTTCEEEE
T ss_pred EEEEEeCCCC----EEEEEECCCCCHHHHHHHHHhhhCCChhHEEEE---ECCEE---CCCC-CcHHHcCCCCCCEEEE
Confidence 3444444443 356788899999999999999999987654443 44433 4432 3333 3555555543
No 141
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=45.75 E-value=90 Score=26.51 Aligned_cols=61 Identities=13% Similarity=0.014 Sum_probs=39.6
Q ss_pred ceEEEecCCcChHHHHHHHHhhccCCcccceeEEEeecceeeEeecCcccccc--cccCCCcEE
Q 003370 419 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIV 480 (825)
Q Consensus 419 ~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~k~~~d~~~~~~--~i~~~d~i~ 480 (825)
.+.++++...++.+|++.+....|++++.+-++..- ..++.+-+.++...|+ .|.++..|.
T Consensus 29 ~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~-~g~~~~~L~~D~~tL~~Y~i~~gstih 91 (95)
T 2kjr_A 29 AFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFK-GDTCVSTMDNNDAQLGYYANSDGLRLH 91 (95)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEE-TTEEEEECCCTTSBHHHHCCSSSCEEE
T ss_pred EEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEec-CCcccceeCCCCCCHhHCCcCCCCEEE
Confidence 567888999999999999999999998766554432 2333333323334444 355555543
No 142
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=44.99 E-value=4.5 Score=40.01 Aligned_cols=65 Identities=28% Similarity=0.371 Sum_probs=0.0
Q ss_pred ceEEeeccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeE
Q 003370 62 CLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI 135 (825)
Q Consensus 62 ~l~l~~~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~ 135 (825)
.|+| ..+.....+.+.+..+++.|++..|+..+++.+.+|+. |.+ ..+ ..++|.+++++.++..|
T Consensus 23 nLKV--~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFL-FDG-----qRI-~dddTPadL~MEDGDtI 87 (227)
T 3v7o_A 23 NLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFL-YDG-----IRI-QADQTPEDLDMEDNDII 87 (227)
T ss_dssp --------------------------------------------------------------------------
T ss_pred EEEE--eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEE-ECC-----Eec-CCCCCHHHcCCCCCCEE
Confidence 5555 23445667889999999999999999999999999887 333 233 35789999999887743
No 143
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=44.90 E-value=1e+02 Score=26.65 Aligned_cols=62 Identities=6% Similarity=0.046 Sum_probs=42.2
Q ss_pred CcceEEEecCCcChHHHHHHHHhhccCCcccceeEEEeecceeeEeecCcccccc--cccCCCcEEEEEec
Q 003370 417 PMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVAYRFD 485 (825)
Q Consensus 417 p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~k~~~d~~~~~~--~i~~~d~i~~y~~~ 485 (825)
-.++.+.+..+.++.+|++.++...|++++...++ |+.++ +.|. ..|. .|.++..|.+-.+.
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI---~~GKi---L~D~-~TL~~y~I~~gsti~vl~lr 92 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQENYIKIV---INKKQ---LQLG-KTLEEQGVAHNVKAMVLELK 92 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEE---ETTEE---CCTT-SBHHHHTCCSSEEEEEECCC
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEE---eCCeE---CCCC-CcHHHcCCCCCCEEEEEEEC
Confidence 35678889999999999999999999976554443 66554 4443 3333 46666666554443
No 144
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=44.61 E-value=38 Score=29.64 Aligned_cols=40 Identities=28% Similarity=0.319 Sum_probs=31.8
Q ss_pred eeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcc
Q 003370 403 TMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKID 446 (825)
Q Consensus 403 ~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~ 446 (825)
.|.++|...+|. .+.+.|+.+.|+.+|++++....++++.
T Consensus 7 ~M~I~Vk~l~g~----~~~v~V~~~~TV~dLK~~I~~~~~i~~~ 46 (105)
T 1v2y_A 7 GMTVRVCKMDGE----VMPVVVVQNATVLDLKKAIQRYVQLKQE 46 (105)
T ss_dssp SEEEEEECSSSC----EEEEEECTTCBHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEecCCC----EEEEEECCCChHHHHHHHHHHHhCCCcc
Confidence 466677666665 4668899999999999999999887653
No 145
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=43.83 E-value=81 Score=26.99 Aligned_cols=35 Identities=9% Similarity=0.043 Sum_probs=29.8
Q ss_pred cceEEEecCCcChHHHHHHHHhhccCCcccceeEE
Q 003370 418 MPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLA 452 (825)
Q Consensus 418 ~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~ 452 (825)
..+.++++...++.+|++.|....|++++.+-++.
T Consensus 27 ~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~ 61 (97)
T 2kj6_A 27 FSADARFSPQMSVEAVKEKLWKKCGTSVNSMALEL 61 (97)
T ss_dssp CCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEE
T ss_pred eEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEE
Confidence 45788999999999999999999999987665544
No 146
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=43.82 E-value=79 Score=27.39 Aligned_cols=66 Identities=20% Similarity=0.217 Sum_probs=54.1
Q ss_pred eeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeEEEeecc-eeeEeecCcccccc
Q 003370 402 RTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNH-QIFRFFENPAELIS 471 (825)
Q Consensus 402 ~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~-~~~k~~~d~~~~~~ 471 (825)
....+.|+..||.. ..+.|++..|.+|+++.|.....+..+..-.++|.+-+ .+-++|+|.+..+.
T Consensus 8 ~k~vvkvf~~Dgss----ksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vve 74 (100)
T 1wgr_A 8 RPHVVKVYSEDGAC----RSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVE 74 (100)
T ss_dssp SCEEEEEEETTSCE----EEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHH
T ss_pred CCEEEEEEecCCCE----EEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHH
Confidence 34567788889875 47899999999999999999999999999999988876 57788887665443
No 147
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=43.67 E-value=40 Score=36.29 Aligned_cols=73 Identities=12% Similarity=0.097 Sum_probs=54.0
Q ss_pred cceEEeeccCCCceEEEeCccccHHHHHHHHHHHhCC----CCcceEEEEeccC-cccccCccCccCCHHHHhccCCCeE
Q 003370 61 LCLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGI----EQEKARIWDYFNK-QRSTSPLDVSDQTLDDAMLQMDQDI 135 (825)
Q Consensus 61 ~~l~l~~~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~----~~~~~rlw~~~~~-~~~~~~l~~~~~tl~~~~~~~~~~~ 135 (825)
+.|+|.+. ....++.|....||.|+...+++.+.- +.++..||-.... ++. ..|. .++||+.+++..+..+
T Consensus 4 ~~~~~~~~--~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~-~Wl~-~~~~l~~y~~~~~~~l 79 (371)
T 3ivf_A 4 LSLKISIG--NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKG-IWLE-AGKALDYYMLRNGDTM 79 (371)
T ss_dssp EEEEEEET--TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGC-EECC-TTSBGGGGTCCTTCEE
T ss_pred EEEEEEec--ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcC-Eecc-CCCCHHHhCCCCCcee
Confidence 45677654 445789999999999999999998863 4568899975553 333 5565 4569999999887644
Q ss_pred EE
Q 003370 136 LL 137 (825)
Q Consensus 136 ~~ 137 (825)
..
T Consensus 80 ~~ 81 (371)
T 3ivf_A 80 EY 81 (371)
T ss_dssp EE
T ss_pred ec
Confidence 43
No 148
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=43.06 E-value=53 Score=27.84 Aligned_cols=63 Identities=16% Similarity=0.063 Sum_probs=40.9
Q ss_pred ceEEEecCCcChHHHHHHHHhhccCCcccceeEEEeec-ceeeEeecCcccccc--cccCCCcEEE
Q 003370 419 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYN-HQIFRFFENPAELIS--SIKDDEHIVA 481 (825)
Q Consensus 419 ~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~-~~~~k~~~d~~~~~~--~i~~~d~i~~ 481 (825)
...+++++..++.+|+..++..+|+++..+-+....-. .....-+.|....|. .+.+++.|.+
T Consensus 24 ~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V 89 (97)
T 1wjn_A 24 ILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLV 89 (97)
T ss_dssp CEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEE
Confidence 45678889999999999999999998766554433211 112222445555554 3566666654
No 149
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=42.66 E-value=20 Score=40.89 Aligned_cols=68 Identities=21% Similarity=0.334 Sum_probs=47.5
Q ss_pred eEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCccc---ccCcc---CccCCHHHHhccCC-CeEEEEEEe
Q 003370 74 TVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRS---TSPLD---VSDQTLDDAMLQMD-QDILLEVQV 141 (825)
Q Consensus 74 ~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~---~~~l~---~~~~tl~~~~~~~~-~~~~~E~~~ 141 (825)
..+.+-|.+|+.+|++.+.+.||++.+.+|||.....++. +.++. +...++.++.-... -.|-||+..
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~~~~~~~~lflE~~~ 112 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSDNENPWTIFLETVD 112 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHHTSCSSEEEEEEECC
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHhccCCceEEEEEecc
Confidence 4688999999999999999999999999999987654433 12221 23346666543322 356688753
No 150
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=41.69 E-value=94 Score=26.62 Aligned_cols=72 Identities=14% Similarity=0.180 Sum_probs=49.6
Q ss_pred eEEeeccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEEEEEe
Q 003370 63 LKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 141 (825)
Q Consensus 63 l~l~~~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~E~~~ 141 (825)
++++ +|+.+...+.+-...|+++-+.++.+.+++.++.+.++......+. .+-.+.|. ....+.+|.+|+.+
T Consensus 16 irvh-LPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~~~~~~~~-~I~WdtDi-----~~L~geEL~Ve~ld 87 (96)
T 3ny5_A 16 VRVF-LPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYRIQDGEKK-PIGWDTDI-----SWLTGEELHVEVLE 87 (96)
T ss_dssp EEEE-ETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEEECC---CE-EECTTBBG-----GGGTTCEEEEEECC
T ss_pred EEEE-CCCCceEEEEecCCcCHHHHHHHHHHHcCCChHHeEEEEccCCCcC-cccccccc-----hhcccceEEehhhh
Confidence 4444 3777778899999999999999999999999999988876432222 11112222 23346788888754
No 151
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=37.85 E-value=55 Score=27.15 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=33.8
Q ss_pred eEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeE
Q 003370 404 MTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLL 451 (825)
Q Consensus 404 ~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~ 451 (825)
|.+.+...+|. .+.+.++.+.++.+|++.++...++++...-++
T Consensus 10 ~~i~v~~~~G~----~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~ 53 (88)
T 1sif_A 10 LQLFIKTLTGK----TFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLI 53 (88)
T ss_dssp CEEEEEETTSC----EEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEE
T ss_pred eEEEEEeCCCC----EEEEEECCCChHHHHHHHHHHHHCcChhhEEEE
Confidence 45566666664 467888999999999999999999987665443
No 152
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=37.75 E-value=1.4e+02 Score=25.35 Aligned_cols=57 Identities=12% Similarity=0.155 Sum_probs=40.4
Q ss_pred ceEEEecCCcChHHHHHHHHhhccCCcccceeEEEeecceeeEeecCccccc--ccccCCCcEEEE
Q 003370 419 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELI--SSIKDDEHIVAY 482 (825)
Q Consensus 419 ~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~k~~~d~~~~~--~~i~~~d~i~~y 482 (825)
++.+.+..+.++.+|++.++...|+++....+ +|..++ +.|. ..+ -.|.+++.|..|
T Consensus 33 k~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrL---if~Gk~---LkD~-~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 33 KVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVL---QKGGSV---LKDH-ISLEDYEVHDQTNLELY 91 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHTCCGGGEEE---EETTEE---CCTT-SBTGGGTCCTTCEEEEE
T ss_pred EEEEEECCcCHHHHHHHHHHHHhCCCHHHEEE---EeCCEE---ccCc-CCHHHcCCCCCCEEEEE
Confidence 56778889999999999999999998766544 445544 4443 223 356777777665
No 153
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=37.31 E-value=30 Score=33.33 Aligned_cols=31 Identities=35% Similarity=0.492 Sum_probs=25.6
Q ss_pred EEEEEeec-CCCCCeEEEEEeeCCCCcEEEeC
Q 003370 753 FAISNHYG-GLGGGHYTAYAKLIDENRWYHFD 783 (825)
Q Consensus 753 ~AVv~H~G-~l~gGHYtAy~k~~~~~~Wy~fn 783 (825)
.|+||--| ..||=|+.|++-++...+.|.||
T Consensus 40 ~AIVNTg~retGGvHWiA~Aw~P~s~~~YmFD 71 (204)
T 4ekf_A 40 CAIVNTAGRETGGVHWMAFAWNPRSKTCYLFE 71 (204)
T ss_dssp EEEEESCC----CCCEEEEEEETTTTEEEEEC
T ss_pred eeEEecCCcccCceeEEEeEecCCcceEEEeC
Confidence 68888877 67777999999999999999998
No 154
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=37.23 E-value=30 Score=34.25 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=25.6
Q ss_pred eecCCCCCeEEEEEeeCCCCcEEEeCCCceeecC
Q 003370 758 HYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVS 791 (825)
Q Consensus 758 H~G~l~gGHYtAy~k~~~~~~Wy~fnDs~V~~v~ 791 (825)
-.|+.++|||+.+.. ..+ +.+|-..+.+++
T Consensus 166 F~G~~~~GHY~~~~~--~~~--~~vDG~~~~~~~ 195 (211)
T 3mp2_A 166 YTGTTQNGHYMVDDI--EHG--YCVDGMGIKPLK 195 (211)
T ss_dssp EESCTTTCEEEEEET--TTT--EEEETTEEECCC
T ss_pred EEcCCCCceEEEEec--ccc--eEEeCCceeEcc
Confidence 389999999999985 333 999999999987
No 155
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=36.72 E-value=71 Score=26.51 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=35.8
Q ss_pred eeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeE
Q 003370 401 TRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLL 451 (825)
Q Consensus 401 ~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~ 451 (825)
...|.++|-..+|. .+.+.+..+.++.+|++.+....|+++..+-++
T Consensus 15 ~~~m~i~Vk~~~g~----~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~ 61 (91)
T 3v6c_B 15 RGSMQIFVNTLTGT----HITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 61 (91)
T ss_dssp CCSEEEEEECTTSC----EEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE
T ss_pred CCeEEEEEEeCCCC----EEEEEECCCCCHHHHHHHHHhhhCCChhhEEEE
Confidence 44566666656664 467888999999999999999999987665443
No 156
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=36.32 E-value=70 Score=26.10 Aligned_cols=45 Identities=9% Similarity=0.099 Sum_probs=33.4
Q ss_pred eeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeE
Q 003370 403 TMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLL 451 (825)
Q Consensus 403 ~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~ 451 (825)
.+.++|-..+|. .+.+.++.+.++.+|++.+....++++...-++
T Consensus 12 ~m~i~vk~~~g~----~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~ 56 (88)
T 3dbh_I 12 SMLIKVKTLTGK----EIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI 56 (88)
T ss_dssp CEEEEEECTTSC----EEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEE
T ss_pred cEEEEEEcCCCC----EEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEE
Confidence 455555545554 357788899999999999999999987665443
No 157
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=36.02 E-value=63 Score=26.53 Aligned_cols=44 Identities=11% Similarity=0.092 Sum_probs=33.4
Q ss_pred eeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCccccee
Q 003370 403 TMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLL 450 (825)
Q Consensus 403 ~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~ 450 (825)
.+.++|-..+|. .+.+.+..+.++.+|++.++...++++..+-+
T Consensus 17 ~m~i~Vk~~~g~----~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL 60 (88)
T 4eew_A 17 SLEVLVKTLDSQ----TRTFIVGAQMNVKEFKEHIAASVSIPSEKQRL 60 (88)
T ss_dssp EEEEEEEETTSC----EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEE
T ss_pred eEEEEEEcCCCC----EEEEEECCCCCHHHHHHHHHHHhCCCHHHEEE
Confidence 455655555554 35678889999999999999999998766544
No 158
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.73 E-value=87 Score=24.96 Aligned_cols=45 Identities=18% Similarity=0.164 Sum_probs=32.9
Q ss_pred eeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeE
Q 003370 403 TMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLL 451 (825)
Q Consensus 403 ~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~ 451 (825)
.+.++|-..+|. .+.+.++.+.++.+|++.++...++++...-++
T Consensus 7 ~m~i~vk~~~g~----~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~ 51 (81)
T 2dzi_A 7 GMQLTVKALQGR----ECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLL 51 (81)
T ss_dssp SEEEEEEETTSC----EEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEE
T ss_pred cEEEEEEeCCCC----EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEE
Confidence 344555444443 456788999999999999999999987665443
No 159
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=35.67 E-value=43 Score=33.13 Aligned_cols=71 Identities=17% Similarity=0.149 Sum_probs=44.9
Q ss_pred CCcccceecCCCchhHHHHHHHHhCChHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHHH
Q 003370 214 KGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGK 293 (825)
Q Consensus 214 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~ 293 (825)
..|.+=|.-.-|.||+||++=.|=++... ++++..++..+ .|..|...
T Consensus 10 ~nG~~vLkq~dNNCwVNaa~l~LQ~~~~~---------------------------~~~aw~~f~~G-----d~~~fV~~ 57 (211)
T 3mp2_A 10 LNGKIILKQGDNNCWINACCYQLQAFDFF---------------------------NNEAWEKFKKG-----DVMDFVNL 57 (211)
T ss_dssp ETTEEEECCCTTCHHHHHHHHHHTTCTTC---------------------------CCHHHHHHTTT-----CCHHHHHH
T ss_pred ECCEEEEEccCCCcHHHHHHHHHHhcChh---------------------------HHHHHHHHhCC-----ChHHHHHH
Confidence 45677777778999999998777655443 11122222222 25555544
Q ss_pred HhhhCCCCCCCCCCCHHHHHHHHH
Q 003370 294 LARFAPQFSGYNQHDSQELLAFLL 317 (825)
Q Consensus 294 l~~~~~~F~~~~QqDA~Efl~~LL 317 (825)
+-... ...-++--||+++|..||
T Consensus 58 ~Ya~~-~~~~G~~gDa~~~L~~Ll 80 (211)
T 3mp2_A 58 CYAAT-TLARGHSGDAEYLLELML 80 (211)
T ss_dssp HHHHH-TCCTTSCCCHHHHHHHHH
T ss_pred HHHHc-CCCCCCCcCHHHHHHHHH
Confidence 43332 456678999999999998
No 160
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=34.28 E-value=72 Score=26.27 Aligned_cols=45 Identities=16% Similarity=0.159 Sum_probs=33.9
Q ss_pred eeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeE
Q 003370 403 TMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLL 451 (825)
Q Consensus 403 ~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~ 451 (825)
.|.+++-...|. .+.+.++.+.++.+|++.++...|+++..+-++
T Consensus 10 ~~~i~vk~l~g~----~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi 54 (84)
T 2kk8_A 10 HMKFLVENLNGS----SFELEVDYRDTLLVVKQKIERSQHIPVSKQTLI 54 (84)
T ss_dssp CEEEEEEETTSC----EEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEE
T ss_pred ceEEEEEecCCc----EEEEEECCCChHHHHHHHHHHHHCcChHHEEEE
Confidence 355555555554 456789999999999999999999987655443
No 161
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=33.42 E-value=70 Score=25.03 Aligned_cols=33 Identities=9% Similarity=0.118 Sum_probs=26.7
Q ss_pred ceEEEecCCcChHHHHHHHHhhccCCcccceeE
Q 003370 419 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLL 451 (825)
Q Consensus 419 ~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~ 451 (825)
.+.+.++.+.++.+|++.++...++++...-++
T Consensus 12 ~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~ 44 (76)
T 3a9j_A 12 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 44 (76)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE
Confidence 356788899999999999999999986654443
No 162
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=32.28 E-value=58 Score=26.34 Aligned_cols=44 Identities=11% Similarity=0.129 Sum_probs=32.1
Q ss_pred eEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeE
Q 003370 404 MTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLL 451 (825)
Q Consensus 404 ~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~ 451 (825)
+.++|-..+|. .+.+.++.+.++.+|++.++...++++...-++
T Consensus 4 m~i~vk~~~g~----~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~ 47 (85)
T 3n3k_B 4 MRIVVKTLMGR----TIILEVEPSDTIENVKAKIQDKEGIPPDQQRLI 47 (85)
T ss_dssp CEEEEECGGGC----EEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE
T ss_pred EEEEEEeCCCC----EEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEE
Confidence 34444444443 367788899999999999999999987665443
No 163
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=31.16 E-value=58 Score=32.11 Aligned_cols=60 Identities=25% Similarity=0.361 Sum_probs=45.1
Q ss_pred cCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeE
Q 003370 69 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI 135 (825)
Q Consensus 69 ~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~ 135 (825)
.+.+...+.+.+.+.++-|++.-|+..+++.+++|+- |.+.. + ..++|..++.+.++..|
T Consensus 28 ~~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~-fdG~~-----i-~~~~Tpk~L~~ed~d~I 87 (209)
T 3uf8_A 28 DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFL-YDGIR-----I-QADQTPEDLDMEDNDII 87 (209)
T ss_dssp CSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEE-ETTEE-----C-CTTCCTTTTTCCTTEEE
T ss_pred cCCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEE-ECCEe-----c-cCCCChHHhhhcccccc
Confidence 3444557899999999999999999999999999887 34322 2 25667777777765544
No 164
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=30.87 E-value=77 Score=24.77 Aligned_cols=32 Identities=3% Similarity=-0.014 Sum_probs=26.3
Q ss_pred ceEEEecCCcChHHHHHHHHhhccCCccccee
Q 003370 419 PFTVTLMKHGCCKDLILALSTACCLKIDEGLL 450 (825)
Q Consensus 419 ~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~ 450 (825)
.+.+.++.+.++.+|++.++...++++...-+
T Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L 43 (76)
T 1ndd_A 12 EIEIDIEPTDKVERIKERVEEKEGIPPQQQRL 43 (76)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHHCCCGGGEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHHCcChHHEEE
Confidence 35678889999999999999999998665444
No 165
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=29.76 E-value=91 Score=25.74 Aligned_cols=33 Identities=3% Similarity=0.015 Sum_probs=27.3
Q ss_pred ceEEEecCCcChHHHHHHHHhhccCCcccceeE
Q 003370 419 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLL 451 (825)
Q Consensus 419 ~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~ 451 (825)
.+.+.++.+.++.+|++.+....++++..+-++
T Consensus 12 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi 44 (88)
T 4fbj_B 12 EIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI 44 (88)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCcChhHEEEE
Confidence 356788899999999999999999987665443
No 166
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=29.50 E-value=1.8e+02 Score=24.38 Aligned_cols=69 Identities=10% Similarity=0.133 Sum_probs=44.4
Q ss_pred ceEEeeccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEEE
Q 003370 62 CLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 137 (825)
Q Consensus 62 ~l~l~~~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~~ 137 (825)
.+|++ .+.+-..+.+...=++.+|.++++..+.+ ++..+..|..+..+++++. +..|+.| ++....|++
T Consensus 14 KVK~y--y~DDIiAIrvP~di~~~~L~dKi~~RLk~--~~~~l~~ykde~~g~~i~s--D~dl~~a-iqrn~KL~l 82 (85)
T 1ip9_A 14 KIKFY--YKDDIFALMLKGDTTYKELRSKIAPRIDT--DNFKLQTKLFDGSGEEIKT--DSQVSNI-IQAKLKISV 82 (85)
T ss_dssp EEEEC--BTTCCEEEEECSCCCHHHHHHHHHHHHTS--SCEEEEECCSSSCCSCCCS--HHHHHHH-HHTTCCEEE
T ss_pred EEEEE--ecCcEEEEECCCCCCHHHHHHHHHHHhcc--cceEEEEecCCCCCCcccC--HHHHHHH-HHhcCeeEE
Confidence 44444 55566778889999999999999999999 4555666566666633332 2344433 555555443
No 167
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=29.30 E-value=93 Score=26.54 Aligned_cols=44 Identities=16% Similarity=0.070 Sum_probs=32.8
Q ss_pred eeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCccccee
Q 003370 402 RTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLL 450 (825)
Q Consensus 402 ~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~ 450 (825)
..+.++|-..+| ++.+.++.+.++.+|++.++...++++...-+
T Consensus 21 ~~m~I~Vk~~~g-----~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL 64 (100)
T 1yqb_A 21 HLIKVTVKTPKD-----KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVL 64 (100)
T ss_dssp TEEEEEEECSSC-----EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEE
T ss_pred CeEEEEEEcCCC-----cEEEEECCCCcHHHHHHHHHHHHCcChhhEEE
Confidence 445565554444 25788889999999999999999998655544
No 168
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=28.82 E-value=89 Score=27.28 Aligned_cols=44 Identities=7% Similarity=-0.167 Sum_probs=33.1
Q ss_pred EEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccce
Q 003370 406 VTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGL 449 (825)
Q Consensus 406 v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l 449 (825)
..++-.|-......+.+.+....|+.+|++.+....|+++..+-
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QR 68 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQ 68 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEE
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEE
Confidence 33333443333467888999999999999999999999876654
No 169
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=28.09 E-value=1e+02 Score=24.57 Aligned_cols=43 Identities=16% Similarity=0.027 Sum_probs=31.7
Q ss_pred eEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCccccee
Q 003370 404 MTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLL 450 (825)
Q Consensus 404 ~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~ 450 (825)
+.+.|-..+|. .+.+.++.+.++.+|++.++...++++...-+
T Consensus 5 m~i~Vk~~~g~----~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL 47 (79)
T 3phx_B 5 LSILVRNNKGR----SSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWL 47 (79)
T ss_dssp EEEEEECTTSC----EEEEEECTTSBHHHHHHHHHHHHTCCGGGEEE
T ss_pred EEEEEEeCCCC----EEEEEECCcChHHHHHHHHHhhcCCCHHHEEE
Confidence 44444444553 35678889999999999999999998766544
No 170
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=27.89 E-value=64 Score=27.27 Aligned_cols=33 Identities=9% Similarity=0.022 Sum_probs=27.8
Q ss_pred ceEEEecCCcChHHHHHHHHhhccCCcccceeE
Q 003370 419 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLL 451 (825)
Q Consensus 419 ~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~ 451 (825)
.+.+.++.+.++.+|++.+....++++..+-++
T Consensus 28 ~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~ 60 (95)
T 1v86_A 28 KHDVKVPLDSTGSELKQKIHSITGLPPAMQKVM 60 (95)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCB
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE
Confidence 456788999999999999999999987665554
No 171
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=27.44 E-value=1e+02 Score=25.33 Aligned_cols=44 Identities=16% Similarity=0.017 Sum_probs=32.2
Q ss_pred eEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeE
Q 003370 404 MTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLL 451 (825)
Q Consensus 404 ~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~ 451 (825)
+.+.|-..+|. .+.+.++.+.++.+|++.++...++++...-++
T Consensus 5 m~I~Vk~~~g~----~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~ 48 (88)
T 2hj8_A 5 LSILVRNNKGR----SSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT 48 (88)
T ss_dssp EEEEEEETTSC----EEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEE
T ss_pred EEEEEECCCCC----EEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE
Confidence 44444444553 356788899999999999999999987665443
No 172
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=27.02 E-value=1e+02 Score=26.82 Aligned_cols=45 Identities=13% Similarity=0.161 Sum_probs=33.2
Q ss_pred eeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeE
Q 003370 403 TMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLL 451 (825)
Q Consensus 403 ~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~ 451 (825)
.|.++|-..+|. .+.+.+....++.+|+..+....++++..+-++
T Consensus 35 ~m~I~Vk~~~G~----~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi 79 (111)
T 3vdz_A 35 AMQIFVKTLTGK----TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 79 (111)
T ss_dssp CEEEEEECSSSC----EEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE
T ss_pred cEEEEEEeCCCC----EEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEE
Confidence 455555545553 356788899999999999999999987655443
No 173
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=26.87 E-value=1.1e+02 Score=24.91 Aligned_cols=44 Identities=14% Similarity=0.122 Sum_probs=31.9
Q ss_pred eEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeE
Q 003370 404 MTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLL 451 (825)
Q Consensus 404 ~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~ 451 (825)
+.++|-..+|. .+.+.++.+.++.+|++.++...++++....++
T Consensus 8 m~i~Vk~~~g~----~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~ 51 (87)
T 1wh3_A 8 IQVFVKNPDGG----SYAYAINPNSFILGLKQQIEDQQGLPKKQQQLE 51 (87)
T ss_dssp EEEEEEETTTE----EEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEE
T ss_pred EEEEEEcCCCC----EEEEEeCCCChHHHHHHHHHHHhCCChHHEEEE
Confidence 44444444443 456788899999999999999999987655443
No 174
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=26.03 E-value=20 Score=26.83 Aligned_cols=15 Identities=40% Similarity=1.205 Sum_probs=11.7
Q ss_pred CCCCCCCCccccccc
Q 003370 677 GPDDMWYCPQCKEHR 691 (825)
Q Consensus 677 ~~~d~w~C~~Ck~~~ 691 (825)
+.+|.|.|..|+++-
T Consensus 7 ~~eD~WkC~~C~k~N 21 (53)
T 2cr8_A 7 GSEDEWQCTECKKFN 21 (53)
T ss_dssp CCSCCEECSSSCCEE
T ss_pred CCcceeecccccccC
Confidence 346889999999653
No 175
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=25.87 E-value=1.6e+02 Score=24.99 Aligned_cols=56 Identities=11% Similarity=0.189 Sum_probs=37.4
Q ss_pred ceEEEecCCcChHHHHHHHHhhccCCcccceeEEEeecceeeEeecCcccccc--cccCCCcEEE
Q 003370 419 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVA 481 (825)
Q Consensus 419 ~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~k~~~d~~~~~~--~i~~~d~i~~ 481 (825)
.+.+.++.+.++.+|++.++...++++...-++ |+.+ .+.| +..+. .|.+++.|.+
T Consensus 36 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi---~~Gk---~L~D-~~tL~~~gI~~g~~I~l 93 (101)
T 2klc_A 36 KEEFAVPENSSVQQFKEEISKRFKSHTDQLVLI---FAGK---ILKD-QDTLSQHGIHDGLTVHL 93 (101)
T ss_dssp EEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEE---ETTE---EECT-TCCTGGGTCCTTCEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCcChhhEEEE---ECCE---ECCC-cCcHHHcCCCCCCEEEE
Confidence 356788899999999999999999987655443 4443 3443 23443 3455655543
No 176
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=25.58 E-value=80 Score=33.19 Aligned_cols=32 Identities=34% Similarity=0.577 Sum_probs=26.0
Q ss_pred eecCCCCCeEEEEEeeCCCCcEEEeCCCceeecCc
Q 003370 758 HYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSE 792 (825)
Q Consensus 758 H~G~l~gGHYtAy~k~~~~~~Wy~fnDs~V~~v~~ 792 (825)
-.|+.++||||-+.- .++. |.||-..+.+++.
T Consensus 265 F~G~~~~GHYt~~~~--~~~~-~~~Dg~~~~~~~~ 296 (315)
T 2fe8_A 265 YTGNYQCGHYTHITA--KETL-YRIDGAHLTKMSE 296 (315)
T ss_dssp EESCGGGCEEEEEEE--SSSE-EEEETTEEEEESE
T ss_pred EECCCCccceEEEec--CCce-eEEeCCcceeccc
Confidence 479999999999985 2334 8999999999874
No 177
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=25.37 E-value=1.2e+02 Score=24.76 Aligned_cols=43 Identities=12% Similarity=0.082 Sum_probs=32.2
Q ss_pred eEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCccccee
Q 003370 404 MTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLL 450 (825)
Q Consensus 404 ~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~ 450 (825)
|.++|-..+|. .+.+.+....++.+|++.+....++++..+-+
T Consensus 6 m~i~Vk~~~g~----~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL 48 (90)
T 4dwf_A 6 LEVLVKTLDSQ----TRTFIVGAQMNVKEFKEHIAASVSIPSEKQRL 48 (90)
T ss_dssp EEEEEEETTCC----EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEE
T ss_pred EEEEEEcCCCC----EEEEEECCCCCHHHHHHHHHHHhCCCHHHEEE
Confidence 45555555554 35678889999999999999999998766544
No 178
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=25.17 E-value=1e+02 Score=26.05 Aligned_cols=54 Identities=9% Similarity=0.025 Sum_probs=37.1
Q ss_pred ce-EEEecCCcChHHHHHHHHhhccCCcccceeEEEeecceeeEeecCcccccc--cccCCCcEE
Q 003370 419 PF-TVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIV 480 (825)
Q Consensus 419 ~~-~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~k~~~d~~~~~~--~i~~~d~i~ 480 (825)
.+ .+.++.+.++.+|++.+....++++..+-++ |..+ .+.|. .+. .|.+++.|.
T Consensus 18 ~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi---~~Gk---~L~D~--tL~~~~I~~g~~i~ 74 (96)
T 1wgg_A 18 KFEGVELNTDEPPMVFKAQLFALTGVQPARQKVM---VKGG---TLKDD--DWGNIKMKNGMTVL 74 (96)
T ss_dssp EEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCE---ETTE---ECCSS--CCCSCCCCSSCEEE
T ss_pred EEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE---ECCc---CCCCC--CHHHCCCCCCCEEE
Confidence 45 4788899999999999999999987766554 4554 34443 443 345555443
No 179
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=24.96 E-value=1.1e+02 Score=25.59 Aligned_cols=33 Identities=9% Similarity=0.118 Sum_probs=27.0
Q ss_pred ceEEEecCCcChHHHHHHHHhhccCCcccceeE
Q 003370 419 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLL 451 (825)
Q Consensus 419 ~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~ 451 (825)
.+.+.++.+.++.+|++.++...++++...-++
T Consensus 12 ~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~ 44 (98)
T 1yx5_B 12 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 44 (98)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEE
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcChhhEEEE
Confidence 356788899999999999999999987655443
No 180
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=24.23 E-value=2.8e+02 Score=24.62 Aligned_cols=56 Identities=11% Similarity=0.185 Sum_probs=37.2
Q ss_pred ceEEEecCCcChHHHHHHHHhhccCCcccceeEEEeecceeeEeecCcccccc--cccCCCcEEE
Q 003370 419 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVA 481 (825)
Q Consensus 419 ~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~k~~~d~~~~~~--~i~~~d~i~~ 481 (825)
.+.+.++.+.++.+|++.+....+++...+-++ |+.+ .+.|. ..|. .|.+++.|++
T Consensus 43 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi---~~Gk---~L~D~-~tL~dygI~~gstI~l 100 (125)
T 1j8c_A 43 KEEFAVPENSSVQQFKEAISKRFKSQTDQLVLI---FAGK---ILKDQ-DTLIQHGIHDGLTVHL 100 (125)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEE---ETTE---EESTT-SCGGGTTCSSSEEEEE
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCcceEEEE---ECCE---EcCCC-CCHHHcCCCCCCEEEE
Confidence 356788889999999999999999987655443 4443 34433 3444 3455555543
No 181
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=24.16 E-value=1.3e+02 Score=25.85 Aligned_cols=44 Identities=14% Similarity=0.058 Sum_probs=32.6
Q ss_pred eEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCcccceeE
Q 003370 404 MTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLL 451 (825)
Q Consensus 404 ~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~ 451 (825)
+.++|-...|. ++.+.+..+.++.+|++.++...|+++....++
T Consensus 29 m~I~VKtl~Gk----~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi 72 (100)
T 1uh6_A 29 IEVVCNDRLGK----KVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLK 72 (100)
T ss_dssp EEEEEECSSSS----CEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEE
T ss_pred EEEEEECCCCC----EEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEE
Confidence 45555444443 456888899999999999999999986655443
No 182
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=23.85 E-value=1.9e+02 Score=29.56 Aligned_cols=64 Identities=13% Similarity=0.154 Sum_probs=42.3
Q ss_pred ccceEEeeccCCCceEEEeCccccHHHHHHHHHHHhCCCCc-ceEEEEeccCcccccCccCccCCHHHH
Q 003370 60 XLCLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQE-KARIWDYFNKQRSTSPLDVSDQTLDDA 127 (825)
Q Consensus 60 P~~l~l~~~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~-~~rlw~~~~~~~~~~~l~~~~~tl~~~ 127 (825)
|+.++|+... . ...+.+....|.++|.+.+|+.+++... -+-||-....... ..| +.++.+.+.
T Consensus 1 ~i~~~V~l~d-~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~-~wL-d~~~~l~~q 65 (294)
T 1ef1_A 1 TISVRVTTMD-A-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFS-TWL-KLNKKVTAQ 65 (294)
T ss_dssp CEEEEEEETT-E-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCE-EEC-CSSSBGGGS
T ss_pred CEEEEEEECC-c-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCce-eec-ccccCHHhh
Confidence 5667777653 3 3568899999999999999999999854 3677743322221 344 345555543
No 183
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=23.67 E-value=1.4e+02 Score=23.52 Aligned_cols=45 Identities=18% Similarity=0.121 Sum_probs=31.5
Q ss_pred eEEEEEecCCCCCCcceEEE-ecCCcChHHHHHHHHhhccCCcccceeE
Q 003370 404 MTVTVFYANGSGLPMPFTVT-LMKHGCCKDLILALSTACCLKIDEGLLL 451 (825)
Q Consensus 404 ~~v~vv~~d~~~~p~~~~~~-v~k~~~~~~l~~~l~~~~~~~~~~~l~~ 451 (825)
|.+.|-..+|... +.+. ++.+.++.+|++.++...++++...-++
T Consensus 3 m~i~Vk~~~g~~~---~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~ 48 (78)
T 2faz_A 3 MWIQVRTMDGRQT---HTVDSLSRLTKVEELRRKIQELFHVEPGLQRLF 48 (78)
T ss_dssp EEEEEEETTSSCE---EEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE
T ss_pred EEEEEEECCCCEE---EEEeccCCCCCHHHHHHHHHHHHCcChhhEEEE
Confidence 3344444445321 3677 8899999999999999999987655443
No 184
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=23.37 E-value=1.5e+02 Score=25.25 Aligned_cols=45 Identities=16% Similarity=0.070 Sum_probs=32.7
Q ss_pred eeeeEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCccccee
Q 003370 401 TRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLL 450 (825)
Q Consensus 401 ~~~~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~ 450 (825)
...|.++|-...+ ++.+.+..+.++.+|++.+....+++....-+
T Consensus 15 ~~~m~I~Vk~~~g-----~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL 59 (106)
T 1wx7_A 15 PHLIKVTVKTPKD-----KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVL 59 (106)
T ss_dssp SSEEEEEEECSSC-----EEEEEEETTCCHHHHHHHHHHHHTCCTTTEEE
T ss_pred CceEEEEEEeCCC-----cEEEEECCCCcHHHHHHHHHHHHCcChhhEEE
Confidence 3445555554444 25788899999999999999999997655444
No 185
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=22.38 E-value=1.3e+02 Score=23.51 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=26.7
Q ss_pred ceEEEecCCcChHHHHHHHHhhccCCccccee
Q 003370 419 PFTVTLMKHGCCKDLILALSTACCLKIDEGLL 450 (825)
Q Consensus 419 ~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~ 450 (825)
.+.+.++.+.++.+|++.++...|+++...-+
T Consensus 15 ~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL 46 (77)
T 2bwf_A 15 KWEVNVAPESTVLQFKEAINKANGIPVANQRL 46 (77)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGGEEE
T ss_pred EEEEEECCCCcHHHHHHHHHHHhCCCHHHEEE
Confidence 36778889999999999999999998665444
No 186
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=22.05 E-value=19 Score=38.73 Aligned_cols=67 Identities=25% Similarity=0.340 Sum_probs=0.0
Q ss_pred cceEEeeccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHHHHhccCCCeEE
Q 003370 61 LCLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDIL 136 (825)
Q Consensus 61 ~~l~l~~~~~~~~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~~~~~~~~~~~~ 136 (825)
+.|+|. .+.....+.+.+..+++.|++..|+..+++.+.+|+. |.+ ..+ ..++|.+++++.++..|=
T Consensus 22 I~LKV~--~~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFl-FdG-----~rI-~~~~TP~~L~MEDgD~Id 88 (360)
T 3ix6_A 22 INLKVS--DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFL-YDG-----IRI-QADQTPEDLDMEDNDIIE 88 (360)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred EEEEEe--cCCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEE-ECC-----eEC-CCCCChHHcCCCccchhh
Confidence 344543 3344567889999999999999999999999999887 333 223 366899999999987543
No 187
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=21.89 E-value=1.8e+02 Score=28.54 Aligned_cols=62 Identities=13% Similarity=0.156 Sum_probs=46.3
Q ss_pred ceEEEecCCcChHHHHHHHHhhccCCcccceeEEEeecceeeEeecCcccccc--cccCCCcEE
Q 003370 419 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIV 480 (825)
Q Consensus 419 ~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~k~~~d~~~~~~--~i~~~d~i~ 480 (825)
.+++.+++..++.++.+.+.+.+++++...+-+-..++..-+..+.+.+..+. .|.+++.|+
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~il 204 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLV 204 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEE
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEE
Confidence 46778899999999999999999998776777777776666677776655543 455555544
No 188
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=21.86 E-value=1.5e+02 Score=23.45 Aligned_cols=43 Identities=9% Similarity=0.043 Sum_probs=31.3
Q ss_pred eEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhccCCccccee
Q 003370 404 MTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLL 450 (825)
Q Consensus 404 ~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~ 450 (825)
+.++|-..+|. .+.+.+..+.++.+|++.++...++++...-+
T Consensus 4 m~i~vk~~~g~----~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL 46 (79)
T 2uyz_B 4 IKLKVIGQDSS----EIHFKVKMTTHLKKLKESYCQRQGVPMNSLRF 46 (79)
T ss_dssp EEEEEECTTCC----EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEE
T ss_pred EEEEEECCCCC----EEEEEECCCChHHHHHHHHHHHHCCCcccEEE
Confidence 44444445553 35677889999999999999999998765443
No 189
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=21.33 E-value=61 Score=34.10 Aligned_cols=74 Identities=18% Similarity=0.280 Sum_probs=45.2
Q ss_pred CCcccceecCCCchhHHHHHHHHhCChH-HHHHHHhcCccccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHH
Q 003370 214 KGGLAGLQNLGNTCFMNSALQCLVHTPD-LAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKG 292 (825)
Q Consensus 214 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~-f~~~~l~~~~~~~~~~n~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~ 292 (825)
..|..=|.=--|.||+||++=.|=++.+ |+. .+++++..++-.+ .|..|..
T Consensus 99 ~~G~~vLkq~dNNCwVNaa~l~LQ~~~~~F~~-----------------------~~l~~aw~~f~~G-----d~~~FVa 150 (315)
T 2fe8_A 99 VGGLTSIKWADNNCYLSSVLLALQQLEVKFNA-----------------------PALQEAYYRARAG-----DAANFCA 150 (315)
T ss_dssp ETTEECCCCCTTTHHHHHHHHHHHTSCCCBSS-----------------------HHHHHHHHHHHHT-----CCHHHHH
T ss_pred ECCEEEEeecCCccHHHHHHHHHHhcCCccCC-----------------------HHHHHHHHHHhCC-----ChHHHHH
Confidence 4566666667899999999866644322 111 1222233333232 3666766
Q ss_pred HHhhhCCCCCCCCCCCHHHHHHHH
Q 003370 293 KLARFAPQFSGYNQHDSQELLAFL 316 (825)
Q Consensus 293 ~l~~~~~~F~~~~QqDA~Efl~~L 316 (825)
.+-... ...-++--||+++|..|
T Consensus 151 ~~Ya~~-~~~~G~~gDa~~~L~~L 173 (315)
T 2fe8_A 151 LILAYS-NKTVGELGDVRETMTHL 173 (315)
T ss_dssp HHHHHT-TCCTTSCCCHHHHHHHH
T ss_pred HHHHhc-CCCCCCCccHHHHHHHH
Confidence 665544 34567899999999888
No 190
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=21.11 E-value=3.5e+02 Score=22.32 Aligned_cols=57 Identities=12% Similarity=0.286 Sum_probs=37.9
Q ss_pred ceEEEecCCcChHHHHHHHHhh---ccCCcccceeEEEeecceeeEeecCcccccc--cccCCCcEEEE
Q 003370 419 PFTVTLMKHGCCKDLILALSTA---CCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVAY 482 (825)
Q Consensus 419 ~~~~~v~k~~~~~~l~~~l~~~---~~~~~~~~l~~~e~~~~~~~k~~~d~~~~~~--~i~~~d~i~~y 482 (825)
.+.+.++.+.++.+|++.++.. .|+++...-++ |+.+ .+.|. ..+. .|.+++.|++.
T Consensus 12 ~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi---~~Gk---~L~D~-~tL~~ygI~~g~~i~l~ 73 (95)
T 1uel_A 12 TFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLI---YAGK---ILNDD-TALKEYKIDEKNFVVVM 73 (95)
T ss_dssp EEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEE---ETTE---ECCTT-SBGGGGTCCSSSEEEEE
T ss_pred EEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEE---ECCE---ECCCc-CcHHHCCCCCCCEEEEE
Confidence 3567888999999999999998 67876555443 4443 44443 3444 45666666543
No 191
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=20.76 E-value=21 Score=34.83 Aligned_cols=46 Identities=11% Similarity=0.094 Sum_probs=0.0
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEeccCcccccCccCccCCHH
Q 003370 73 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLD 125 (825)
Q Consensus 73 ~~~~~~Sk~~ti~~L~~~v~~~~~~~~~~~rlw~~~~~~~~~~~l~~~~~tl~ 125 (825)
..++.++..+||.+|+.++....+|++++-||. |.+ ..|. ++.||.
T Consensus 12 titLeV~~sdTV~~LK~kI~~keGIP~~qQRLI-f~G-----K~Le-D~~TLs 57 (189)
T 2xzm_9 12 TKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLV-NNG-----FIAP-NTELVT 57 (189)
T ss_dssp -----------------------------------------------------
T ss_pred EEEEEECCcChHHHHHHHHHHHhCcChhHEEEE-ecC-----eECC-CCCccc
Confidence 456778899999999999999999999999987 332 3454 356776
No 192
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=20.42 E-value=1e+02 Score=25.33 Aligned_cols=33 Identities=15% Similarity=0.112 Sum_probs=27.1
Q ss_pred ceEEEecCCcChHHHHHHHHhhccCCcccceeE
Q 003370 419 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLL 451 (825)
Q Consensus 419 ~~~~~v~k~~~~~~l~~~l~~~~~~~~~~~l~~ 451 (825)
.+.+.++.+.++.+|++.++...++++..+-++
T Consensus 23 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~ 55 (85)
T 2kd0_A 23 SIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLI 55 (85)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEE
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE
Confidence 356788899999999999999999987655443
No 193
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=20.18 E-value=2.3e+02 Score=23.33 Aligned_cols=46 Identities=15% Similarity=0.052 Sum_probs=31.4
Q ss_pred eEEEEEecCCCCCCcceEEEecCCcChHHHHHHHHhhc--cCCcccceeE
Q 003370 404 MTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTAC--CLKIDEGLLL 451 (825)
Q Consensus 404 ~~v~vv~~d~~~~p~~~~~~v~k~~~~~~l~~~l~~~~--~~~~~~~l~~ 451 (825)
+.++|-..++. ...+.+.++.+.++.+|++.++... +++++.+-++
T Consensus 8 m~i~Vk~~~~~--~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi 55 (93)
T 1wgd_A 8 VTLLVKSPNQR--HRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLI 55 (93)
T ss_dssp CEEEEECSSSS--CCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEE
T ss_pred EEEEEEeCCCC--eEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEE
Confidence 44444433332 2345667779999999999999988 8877665544
No 194
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=20.08 E-value=1.3e+02 Score=28.51 Aligned_cols=89 Identities=12% Similarity=0.220 Sum_probs=52.5
Q ss_pred CCCccccccceEEEEEEeeeCCCeEEEEEeeeEeecccccccceeeeccCcccccccccccCCCCceEEEEEEEEEeecC
Q 003370 682 WYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGG 761 (825)
Q Consensus 682 w~C~~Ck~~~~A~Kk~~i~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVv~H~G~ 761 (825)
|.|..|++...+ +|...|.+ | .|......|-...+.|--++|++.+|.-... +... +
T Consensus 71 ~KCk~C~re~Si----~i~~~~~~------~-~y~~~d~~k~~~i~~FDCRGlEp~eF~p~~~-----w~a~-------~ 127 (164)
T 1zso_A 71 IKWTEYPKYSTI----NFVNTKNS------C-SYEEVNNNEWRDFASFECRGIELIDFFPSNN-----FIVE-------D 127 (164)
T ss_dssp ECCSSSSCCEEE----EEECCTTT------T-EEEGGGTTSCEEEEEEEEESEEEEEECCCSC-----EEEE-------E
T ss_pred EeccccCCcceE----EEEeCCCC------c-ccccccCCCceEEEEEECCCeeeEEEecCCc-----EEEE-------E
Confidence 889999876654 34444421 2 1222234466678888888888877754331 1111 3
Q ss_pred CCCCeEEEEEeeCCCCcEEEeCCCceeecCcCcc
Q 003370 762 LGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDI 795 (825)
Q Consensus 762 l~gGHYtAy~k~~~~~~Wy~fnDs~V~~v~~~~v 795 (825)
..+| -..=+ +..++.||.||+..=.+|+-.++
T Consensus 128 ~esG-~f~dv-DLse~eW~DYDEk~~~~VsI~e~ 159 (164)
T 1zso_A 128 TKGK-LYYDV-NLSDQNWCDYNEEHEMCVGIYNL 159 (164)
T ss_dssp TTSC-EEEEE-CCTTSCEEEEETTTTEEEEEEEE
T ss_pred CCCC-cEEee-ecCCCceeccccCCCCeEEEEEE
Confidence 4566 22223 33567899999988776664433
Done!