BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003372
(825 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HPP|A Chain A, Crystal Structure Of Novel Glutamine Synthase Homolog
Length = 443
Score = 137 bits (345), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 123/432 (28%), Positives = 191/432 (44%), Gaps = 45/432 (10%)
Query: 408 VSLIRVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTNLSGTG 467
V L+ + D +G R R +P+ + + G G A +T D + + G
Sbjct: 7 VRLVSFVTTDLAGITRGRSLPLATLEEQLAS-GCGWVPANSSLTPQ-DLIDESSPWGSHG 64
Query: 468 EIRLMPDLSTRWRIPWQKQE-----EMIMADMHLKPGEPWEYCPREALR-KVSRLLKEEF 521
++RL+PD ++R R+ + + ++ G PW CPR LR +V R
Sbjct: 65 DLRLLPDPNSRVRVEQGPDAAAPALDYLHGNLVETDGTPWPACPRSLLRAEVERYRDSGL 124
Query: 522 NLVLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNIS 581
++ A FE EF LL + S A A +++ L
Sbjct: 125 QVI--AAFEHEFSLLGLPGERPAAAF---------SLQAQRAAGQFPGWLVSALAQAGTE 173
Query: 582 VEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVP----NLWQN 637
E E G+ Q+E+ AAD + REV R VAR+ GL F P N
Sbjct: 174 PEMFLPEYGQRQYEVTCRPAQGVAAADRAVNVREVTREVARQMGLRTCFAPLPAPGAVTN 233
Query: 638 GENVFMA---SDSSS-------KHGMSSVGEKFMAGVLHHLSSILAFTAPVPNSYDRIQP 687
G ++ ++ +D S + +S +GE + AGVL HL ++ A TAP SY R++P
Sbjct: 234 GVHLHLSLQHADGSPLLYEPGRPNDLSELGEHWAAGVLAHLPALCALTAPTAASYLRLKP 293
Query: 688 NTWSGAYQCWGKENREAPLRTACP----PGVKDGVVSNFELKSFDGCANPHLGLAAIIAS 743
+ WS AY C G NREA LR CP G G N E + D PHL +AA++ +
Sbjct: 294 HHWSAAYACLGLRNREAALRI-CPVVSVGGKPLGKQYNLEFRPMDATTCPHLAMAAVLIA 352
Query: 744 GIDGL-RRLCLPEPIDANPASLDGK------LQRLPTSLSESVQALEKDDILRDMIGEKL 796
G G+ RRL L D +P L + +Q LP +L +++ L++D+ L + + L
Sbjct: 353 GRLGIERRLPLRALADVDPHGLSDEERQARGIQALPATLGDALDCLQRDEALCAELPKPL 412
Query: 797 LIAIKGIRKAEI 808
L +++ E+
Sbjct: 413 LDTYLAMKRHEL 424
>pdb|2QPX|A Chain A, Crystal Structure Of Putative Metal-Dependent Hydrolase
(Yp_805737.1) From Lactobacillus Casei Atcc 334 At 1.40
A Resolution
Length = 376
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 112/355 (31%), Positives = 171/355 (48%), Gaps = 34/355 (9%)
Query: 4 EELREVVENIELVDGHAHNIV-----SLDSSFPFIQSFSEATGPALSYAPYSLSFKRNLK 58
++L E V+ + L+D H H ++ + D + + ++ P L+ L++ L
Sbjct: 3 DDLSEFVDQVPLLDHHCHFLIDGKVPNRDDRLAQVSTEADKDYP-LADTKNRLAYHGFLA 61
Query: 59 NIAELYGCDSS--LQAVEEYRRAAGLQSICSICFEAANISAVLIDDGLKLDKK-HGLDWH 115
+A+ + D++ L A + G + F + +LID G D LD
Sbjct: 62 -LAKEFALDANNPLAAXND----PGYATYNHRIFGHFHFKELLIDTGFVPDDPILDLDQT 116
Query: 116 KSLVPF-VGRILRIERLAEEILDQASPDGSIWTLDVFIETFLKQLRSA-ANKIVGLKSIA 173
LV V I R+E AE+ + + W + F ++ A A+ VG SIA
Sbjct: 117 AELVGIPVKAIYRLETHAEDFXLEHDNFAAWW------QAFSNDVKQAKAHGFVGFXSIA 170
Query: 174 AYRSGLEINPHVTKKDAEEGLAEDLRSGKPVRITNKSLIDYIF--ISSLEVAQFLDLPLQ 231
AYR GL + P V +A G SG+ R+T+K LIDY ++ +AQ D PLQ
Sbjct: 171 AYRVGLHLEP-VNVIEAAAGFDTWKHSGEK-RLTSKPLIDYXLYHVAPFIIAQ--DXPLQ 226
Query: 232 IHTGFGDKDLDLRLSNPLHLRAILEDKRFSK--CRFVLLHASYPFSKEASYLAYVYPQVY 289
H G+GD D D L NPL R L K F+K + VLLH YP+ +EA YLA V+P +Y
Sbjct: 227 FHVGYGDADTDXYLGNPLLXRDYL--KAFTKKGLKVVLLHC-YPYHREAGYLASVFPNLY 283
Query: 290 LDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVV 344
D L + L G E +ELAP +++F++DA PE Y L A++ ++ +
Sbjct: 284 FDISL-LDNLGPSGASRVFNEAVELAPYTRILFASDASTYPEXYGLAARQFKQAL 337
>pdb|3NG0|A Chain A, Crystal Structure Of Glutamine Synthetase From
Synechocystis Sp. Pcc 6803
Length = 473
Score = 115 bits (289), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 103/383 (26%), Positives = 170/383 (44%), Gaps = 59/383 (15%)
Query: 457 PADGTNLSGTGEIR-----LMPDLSTRWRIPWQKQE--EMIMADMHLKPGEPWEYCPREA 509
P DG+++ G I ++PD +T P+ K+ MI + + GE + PR
Sbjct: 51 PFDGSSIRGWKAINESDMCMVPDPNTATIDPFCKEPTLSMICSIKEPRTGEWYNRDPRTI 110
Query: 510 LRKVSRLLKEE-FNLVLNAGFEIEFYLLKSV-------------------LREGKEE--- 546
K + L+ + G E EF+L + G+EE
Sbjct: 111 AAKAAEYLRGTGIADTVYFGPEAEFFLFDDIRFGQTENSSYYFADSVEGRWNTGREEEGG 170
Query: 547 ---WVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAE-AGKGQFEIALGHTV 602
+ P Y A D + E+L + + + +E+ H E A GQ E+ +
Sbjct: 171 NLGYKPGYKQGYFPVAPTDTAQDIRTEMLLTMAAFGVPIEKHHHEVASGGQNELGIKFDK 230
Query: 603 AAKAADNLIFTREVLRAVARKHGLLATFVP---------------NLWQNGENVFMASDS 647
+ADNL+ + V++ VA+K+G TF+P +LW++G+ +F A D
Sbjct: 231 LVNSADNLMIYKYVIKNVAKKYGKTVTFMPKPIFNDNGSGMHVHQSLWKDGQPLF-AGDK 289
Query: 648 SSKHGMSSVGEKFMAGVLHHLSSILAFTAPVPNSYDRIQPNTWSGAYQCWGKENREAPLR 707
+ G S +G ++ G+L H ++LAFT P NSY R+ P + + + NR A +R
Sbjct: 290 YA--GFSQMGLWYIGGILKHAPALLAFTNPTTNSYKRLVPGFEAPVNLAYSQGNRSASVR 347
Query: 708 TACPPGVKDGVVSNFELKSFDGCANPHLGLAAIIASGIDGLRRLCLP-EPIDANPASLD- 765
G + E + D +NP+L AA++ +GIDG++ P EP+D + L
Sbjct: 348 IPLSGG--NPKAKRLEFRCPDATSNPYLAFAAMLCAGIDGIKNQIDPGEPLDVDIYDLSP 405
Query: 766 ---GKLQRLPTSLSESVQALEKD 785
K+ P SL +++ALEKD
Sbjct: 406 EELAKIPSTPGSLEAALEALEKD 428
>pdb|1HTO|A Chain A, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|B Chain B, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|C Chain C, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|D Chain D, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|E Chain E, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|F Chain F, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|G Chain G, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|H Chain H, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|I Chain I, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|J Chain J, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|K Chain K, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|L Chain L, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|M Chain M, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|N Chain N, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|O Chain O, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|P Chain P, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|Q Chain Q, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|R Chain R, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|S Chain S, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|T Chain T, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|U Chain U, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|V Chain V, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|W Chain W, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTO|X Chain X, Crystallographic Structure Of A Relaxed Glutamine
Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|A Chain A, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|B Chain B, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|C Chain C, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|D Chain D, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|E Chain E, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|F Chain F, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|G Chain G, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|H Chain H, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|I Chain I, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|J Chain J, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|K Chain K, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|L Chain L, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|M Chain M, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|N Chain N, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|O Chain O, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|P Chain P, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|Q Chain Q, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|R Chain R, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|S Chain S, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|T Chain T, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|U Chain U, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|V Chain V, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|W Chain W, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
pdb|1HTQ|X Chain X, Multicopy Crystallographic Structure Of A Relaxed
Glutamine Synthetase From Mycobacterium Tuberculosis
Length = 477
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 108/443 (24%), Positives = 177/443 (39%), Gaps = 82/443 (18%)
Query: 403 AFESDVSLIRVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTN 462
A + V + V + D G + +P F+ V + GL F DG++
Sbjct: 12 AKDEKVEYVDVRFCDLPGIMQHFTIPASAFDKSV--FDDGLAF-------------DGSS 56
Query: 463 LSGTGEIR-----LMPDLSTRWRIPWQKQEEMIMADMHLKPG--EPWEYCPREALRKVSR 515
+ G I L+PD T P++ + + + P EP+ PR RK
Sbjct: 57 IRGFQSIHESDMLLLPDPETARIDPFRAAKTLNINFFVHDPFTLEPYSRDPRNIARKAEN 116
Query: 516 -LLKEEFNLVLNAGFEIEFYLLKSVLREGKEE------------W-----VPIDFTP--- 554
L+ G E EFY+ SV + + W D +P
Sbjct: 117 YLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNTGAATEADGSPNRG 176
Query: 555 --------YCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKG-QFEIALGHTVAAK 605
Y A D + ++L +L + +E+ H E G G Q EI
Sbjct: 177 YKVRHKGGYFPVAPNDQYVDLRDKMLTNLINSGFILEKGHHEVGSGGQAEINYQFNSLLH 236
Query: 606 AADNLIFTREVLRAVARKHGLLATFVP---------------NLWQNGENVFMASDSSSK 650
AAD++ + +++ A ++G TF+P +LW++G + D +
Sbjct: 237 AADDMQLYKYIIKNTAWQNGKTVTFMPKPLFGDNGSGMHCHQSLWKDGAPLMY--DETGY 294
Query: 651 HGMSSVGEKFMAGVLHHLSSILAFTAPVPNSYDRIQPNTWSGAYQCWGKENREAPLR--- 707
G+S ++ G+LHH S+LAFT P NSY R+ P + + + NR A +R
Sbjct: 295 AGLSDTARHYIGGLLHHAPSLLAFTNPTVNSYKRLVPGYEAPINLVYSQRNRSACVRIPI 354
Query: 708 TACPPGVKDGVVSNFELKSFDGCANPHLGLAAIIASGIDGLRRLCLPE-PIDAN----PA 762
T P K E +S D NP+L +A++ +G+DG++ P+ P+D + P
Sbjct: 355 TGSNPKAK-----RLEFRSPDSSGNPYLAFSAMLMAGLDGIKNKIEPQAPVDKDLYELPP 409
Query: 763 SLDGKLQRLPTSLSESVQALEKD 785
+ + PT LS+ + LE D
Sbjct: 410 EEAASIPQTPTQLSDVIDRLEAD 432
>pdb|2BVC|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Transition State Mimic
pdb|2BVC|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Transition State Mimic
pdb|2BVC|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Transition State Mimic
pdb|2BVC|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Transition State Mimic
pdb|2BVC|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Transition State Mimic
pdb|2BVC|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Transition State Mimic
pdb|2WGS|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|I Chain I, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|K Chain K, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WGS|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor.
pdb|2WHI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor
And L-Methionine-S-Sulfoximine Phosphate.
pdb|2WHI|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor
And L-Methionine-S-Sulfoximine Phosphate.
pdb|2WHI|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor
And L-Methionine-S-Sulfoximine Phosphate.
pdb|2WHI|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor
And L-Methionine-S-Sulfoximine Phosphate.
pdb|2WHI|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor
And L-Methionine-S-Sulfoximine Phosphate.
pdb|2WHI|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With A Purine Analogue Inhibitor
And L-Methionine-S-Sulfoximine Phosphate.
pdb|3ZXR|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(3-(2-Tert-Butyl-5-(Pyridin-4-Yl)-1h-Imidazol-4-
Yl)quinoline) And L-Methionine-S-Sulfoximine Phosphate.
pdb|3ZXR|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(3-(2-Tert-Butyl-5-(Pyridin-4-Yl)-1h-Imidazol-4-
Yl)quinoline) And L-Methionine-S-Sulfoximine Phosphate.
pdb|3ZXR|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(3-(2-Tert-Butyl-5-(Pyridin-4-Yl)-1h-Imidazol-4-
Yl)quinoline) And L-Methionine-S-Sulfoximine Phosphate.
pdb|3ZXR|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(3-(2-Tert-Butyl-5-(Pyridin-4-Yl)-1h-Imidazol-4-
Yl)quinoline) And L-Methionine-S-Sulfoximine Phosphate.
pdb|3ZXR|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(3-(2-Tert-Butyl-5-(Pyridin-4-Yl)-1h-Imidazol-4-
Yl)quinoline) And L-Methionine-S-Sulfoximine Phosphate.
pdb|3ZXR|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(3-(2-Tert-Butyl-5-(Pyridin-4-Yl)-1h-Imidazol-4-
Yl)quinoline) And L-Methionine-S-Sulfoximine Phosphate.
pdb|3ZXV|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(4-(2-Tert-Butyl-4-(6-Methoxynaphthalen-2-Yl)-1h-
Imidazol-5-Yl)pyridin-2-Amine) And L-Methionine-S-
Sulfoximine Phosphate
pdb|3ZXV|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(4-(2-Tert-Butyl-4-(6-Methoxynaphthalen-2-Yl)-1h-
Imidazol-5-Yl)pyridin-2-Amine) And L-Methionine-S-
Sulfoximine Phosphate
pdb|3ZXV|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(4-(2-Tert-Butyl-4-(6-Methoxynaphthalen-2-Yl)-1h-
Imidazol-5-Yl)pyridin-2-Amine) And L-Methionine-S-
Sulfoximine Phosphate
pdb|3ZXV|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(4-(2-Tert-Butyl-4-(6-Methoxynaphthalen-2-Yl)-1h-
Imidazol-5-Yl)pyridin-2-Amine) And L-Methionine-S-
Sulfoximine Phosphate
pdb|3ZXV|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(4-(2-Tert-Butyl-4-(6-Methoxynaphthalen-2-Yl)-1h-
Imidazol-5-Yl)pyridin-2-Amine) And L-Methionine-S-
Sulfoximine Phosphate
pdb|3ZXV|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Tri-Substituted Imidazole
Inhibitor
(4-(2-Tert-Butyl-4-(6-Methoxynaphthalen-2-Yl)-1h-
Imidazol-5-Yl)pyridin-2-Amine) And L-Methionine-S-
Sulfoximine Phosphate
pdb|4ACF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Imidazopyridine Inhibitor
((4-(6-Bromo-3-
(Butylamino)imidazo(1,2-A)pyridin-2-Yl)phenoxy) Acetic
Acid) And L- Methionine-S-Sulfoximine Phosphate.
pdb|4ACF|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Imidazopyridine Inhibitor
((4-(6-Bromo-3-
(Butylamino)imidazo(1,2-A)pyridin-2-Yl)phenoxy) Acetic
Acid) And L- Methionine-S-Sulfoximine Phosphate.
pdb|4ACF|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Imidazopyridine Inhibitor
((4-(6-Bromo-3-
(Butylamino)imidazo(1,2-A)pyridin-2-Yl)phenoxy) Acetic
Acid) And L- Methionine-S-Sulfoximine Phosphate.
pdb|4ACF|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Imidazopyridine Inhibitor
((4-(6-Bromo-3-
(Butylamino)imidazo(1,2-A)pyridin-2-Yl)phenoxy) Acetic
Acid) And L- Methionine-S-Sulfoximine Phosphate.
pdb|4ACF|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Imidazopyridine Inhibitor
((4-(6-Bromo-3-
(Butylamino)imidazo(1,2-A)pyridin-2-Yl)phenoxy) Acetic
Acid) And L- Methionine-S-Sulfoximine Phosphate.
pdb|4ACF|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Glutamine
Synthetase In Complex With Imidazopyridine Inhibitor
((4-(6-Bromo-3-
(Butylamino)imidazo(1,2-A)pyridin-2-Yl)phenoxy) Acetic
Acid) And L- Methionine-S-Sulfoximine Phosphate
Length = 486
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 108/443 (24%), Positives = 177/443 (39%), Gaps = 82/443 (18%)
Query: 403 AFESDVSLIRVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTN 462
A + V + V + D G + +P F+ V + GL F DG++
Sbjct: 21 AKDEKVEYVDVRFCDLPGIMQHFTIPASAFDKSV--FDDGLAF-------------DGSS 65
Query: 463 LSGTGEIR-----LMPDLSTRWRIPWQKQEEMIMADMHLKPG--EPWEYCPREALRKVSR 515
+ G I L+PD T P++ + + + P EP+ PR RK
Sbjct: 66 IRGFQSIHESDMLLLPDPETARIDPFRAAKTLNINFFVHDPFTLEPYSRDPRNIARKAEN 125
Query: 516 -LLKEEFNLVLNAGFEIEFYLLKSVLREGKEE------------W-----VPIDFTP--- 554
L+ G E EFY+ SV + + W D +P
Sbjct: 126 YLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNTGAATEADGSPNRG 185
Query: 555 --------YCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKG-QFEIALGHTVAAK 605
Y A D + ++L +L + +E+ H E G G Q EI
Sbjct: 186 YKVRHKGGYFPVAPNDQYVDLRDKMLTNLINSGFILEKGHHEVGSGGQAEINYQFNSLLH 245
Query: 606 AADNLIFTREVLRAVARKHGLLATFVP---------------NLWQNGENVFMASDSSSK 650
AAD++ + +++ A ++G TF+P +LW++G + D +
Sbjct: 246 AADDMQLYKYIIKNTAWQNGKTVTFMPKPLFGDNGSGMHCHQSLWKDGAPLMY--DETGY 303
Query: 651 HGMSSVGEKFMAGVLHHLSSILAFTAPVPNSYDRIQPNTWSGAYQCWGKENREAPLR--- 707
G+S ++ G+LHH S+LAFT P NSY R+ P + + + NR A +R
Sbjct: 304 AGLSDTARHYIGGLLHHAPSLLAFTNPTVNSYKRLVPGYEAPINLVYSQRNRSACVRIPI 363
Query: 708 TACPPGVKDGVVSNFELKSFDGCANPHLGLAAIIASGIDGLRRLCLPE-PIDAN----PA 762
T P K E +S D NP+L +A++ +G+DG++ P+ P+D + P
Sbjct: 364 TGSNPKAK-----RLEFRSPDSSGNPYLAFSAMLMAGLDGIKNKIEPQAPVDKDLYELPP 418
Query: 763 SLDGKLQRLPTSLSESVQALEKD 785
+ + PT LS+ + LE D
Sbjct: 419 EEAASIPQTPTQLSDVIDRLEAD 441
>pdb|2GLS|A Chain A, Refined Atomic Model Of Glutamine Synthetase At 3.5
Angstroms Resolution
pdb|2GLS|B Chain B, Refined Atomic Model Of Glutamine Synthetase At 3.5
Angstroms Resolution
pdb|2GLS|C Chain C, Refined Atomic Model Of Glutamine Synthetase At 3.5
Angstroms Resolution
pdb|2GLS|D Chain D, Refined Atomic Model Of Glutamine Synthetase At 3.5
Angstroms Resolution
pdb|2GLS|E Chain E, Refined Atomic Model Of Glutamine Synthetase At 3.5
Angstroms Resolution
pdb|2GLS|F Chain F, Refined Atomic Model Of Glutamine Synthetase At 3.5
Angstroms Resolution
pdb|2GLS|G Chain G, Refined Atomic Model Of Glutamine Synthetase At 3.5
Angstroms Resolution
pdb|2GLS|H Chain H, Refined Atomic Model Of Glutamine Synthetase At 3.5
Angstroms Resolution
pdb|2GLS|I Chain I, Refined Atomic Model Of Glutamine Synthetase At 3.5
Angstroms Resolution
pdb|2GLS|J Chain J, Refined Atomic Model Of Glutamine Synthetase At 3.5
Angstroms Resolution
pdb|2GLS|K Chain K, Refined Atomic Model Of Glutamine Synthetase At 3.5
Angstroms Resolution
pdb|2GLS|L Chain L, Refined Atomic Model Of Glutamine Synthetase At 3.5
Angstroms Resolution
Length = 469
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 103/432 (23%), Positives = 174/432 (40%), Gaps = 69/432 (15%)
Query: 405 ESDVSLIRVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTNLS 464
E +V + + + D G+ + +P + N + G + +G ++
Sbjct: 12 EHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEFFEEGKMFDGSSIGGWKGIN--------- 62
Query: 465 GTGEIRLMPDLSTRWRIPWQKQEEMIMADMHLKPG--EPWEYCPREALRKVSRLLKEE-- 520
++ LMPD ST P+ +I+ L+PG + ++ PR ++ L+
Sbjct: 63 -ESDMVLMPDASTAVIDPFFADSTLIIRCDILEPGTLQGYDRDPRSIAKRAEDYLRATGI 121
Query: 521 FNLVLNAGFEIEFYLLKSV-------------------------LREGKEEWVPIDFTPY 555
+ VL G E EF+L + G + P Y
Sbjct: 122 ADTVL-FGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGGY 180
Query: 556 CSTAAYDAVSPVFQEVLADLHSLNISVEQLHAE-AGKGQFEIALGHTVAAKAADNLIFTR 614
D+ + E+ + + + VE H E A GQ E+A K AD + +
Sbjct: 181 FPVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYK 240
Query: 615 EVLRAVARKHGLLATFVP---------------NLWQNGENVFMASDSSSKH-GMSSVGE 658
V+ VA + G ATF+P +L +NG N+F S K+ G+S
Sbjct: 241 YVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLAKNGTNLF----SGDKYAGLSEQAL 296
Query: 659 KFMAGVLHHLSSILAFTAPVPNSYDRIQPNTWSGAYQCWGKENREAPLRTACPPGVKDGV 718
++ GV+ H +I A P NSY R+ P + + NR A +R P V
Sbjct: 297 YYIGGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSARNRSASIRI---PVVASPK 353
Query: 719 VSNFELKSFDGCANPHLGLAAIIASGIDGLRRLCLP-EPIDAN----PASLDGKLQRLPT 773
E++ D ANP+L AA++ +G+DG++ P EP+D N P ++ ++
Sbjct: 354 ARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPGEPMDKNLYDLPPEEAKEIPQVAG 413
Query: 774 SLSESVQALEKD 785
SL E++ AL+ D
Sbjct: 414 SLEEALNALDLD 425
>pdb|1F52|A Chain A, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium Co-Crystallized With Adp
pdb|1F52|B Chain B, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium Co-Crystallized With Adp
pdb|1F52|C Chain C, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium Co-Crystallized With Adp
pdb|1F52|D Chain D, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium Co-Crystallized With Adp
pdb|1F52|E Chain E, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium Co-Crystallized With Adp
pdb|1F52|F Chain F, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium Co-Crystallized With Adp
pdb|1F52|G Chain G, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium Co-Crystallized With Adp
pdb|1F52|H Chain H, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium Co-Crystallized With Adp
pdb|1F52|I Chain I, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium Co-Crystallized With Adp
pdb|1F52|J Chain J, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium Co-Crystallized With Adp
pdb|1F52|K Chain K, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium Co-Crystallized With Adp
pdb|1F52|L Chain L, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium Co-Crystallized With Adp
pdb|1F1H|A Chain A, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Thallium Ions
pdb|1F1H|B Chain B, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Thallium Ions
pdb|1F1H|C Chain C, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Thallium Ions
pdb|1F1H|D Chain D, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Thallium Ions
pdb|1F1H|E Chain E, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Thallium Ions
pdb|1F1H|F Chain F, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Thallium Ions
pdb|1F1H|G Chain G, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Thallium Ions
pdb|1F1H|H Chain H, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Thallium Ions
pdb|1F1H|I Chain I, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Thallium Ions
pdb|1F1H|J Chain J, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Thallium Ions
pdb|1F1H|K Chain K, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Thallium Ions
pdb|1F1H|L Chain L, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Thallium Ions
pdb|1FPY|A Chain A, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Inhibitor Phosphinothricin
pdb|1FPY|B Chain B, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Inhibitor Phosphinothricin
pdb|1FPY|C Chain C, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Inhibitor Phosphinothricin
pdb|1FPY|D Chain D, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Inhibitor Phosphinothricin
pdb|1FPY|E Chain E, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Inhibitor Phosphinothricin
pdb|1FPY|F Chain F, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Inhibitor Phosphinothricin
pdb|1FPY|G Chain G, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Inhibitor Phosphinothricin
pdb|1FPY|H Chain H, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Inhibitor Phosphinothricin
pdb|1FPY|I Chain I, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Inhibitor Phosphinothricin
pdb|1FPY|J Chain J, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Inhibitor Phosphinothricin
pdb|1FPY|K Chain K, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Inhibitor Phosphinothricin
pdb|1FPY|L Chain L, Crystal Structure Of Glutamine Synthetase From Salmonella
Typhimurium With Inhibitor Phosphinothricin
pdb|1LGR|A Chain A, Interactions Of Nucleotides With Fully Unadenylylated
Glutamine Synthetase From Salmonella Typhimurium
pdb|1LGR|B Chain B, Interactions Of Nucleotides With Fully Unadenylylated
Glutamine Synthetase From Salmonella Typhimurium
pdb|1LGR|C Chain C, Interactions Of Nucleotides With Fully Unadenylylated
Glutamine Synthetase From Salmonella Typhimurium
pdb|1LGR|D Chain D, Interactions Of Nucleotides With Fully Unadenylylated
Glutamine Synthetase From Salmonella Typhimurium
pdb|1LGR|E Chain E, Interactions Of Nucleotides With Fully Unadenylylated
Glutamine Synthetase From Salmonella Typhimurium
pdb|1LGR|F Chain F, Interactions Of Nucleotides With Fully Unadenylylated
Glutamine Synthetase From Salmonella Typhimurium
pdb|1LGR|G Chain G, Interactions Of Nucleotides With Fully Unadenylylated
Glutamine Synthetase From Salmonella Typhimurium
pdb|1LGR|H Chain H, Interactions Of Nucleotides With Fully Unadenylylated
Glutamine Synthetase From Salmonella Typhimurium
pdb|1LGR|I Chain I, Interactions Of Nucleotides With Fully Unadenylylated
Glutamine Synthetase From Salmonella Typhimurium
pdb|1LGR|J Chain J, Interactions Of Nucleotides With Fully Unadenylylated
Glutamine Synthetase From Salmonella Typhimurium
pdb|1LGR|K Chain K, Interactions Of Nucleotides With Fully Unadenylylated
Glutamine Synthetase From Salmonella Typhimurium
pdb|1LGR|L Chain L, Interactions Of Nucleotides With Fully Unadenylylated
Glutamine Synthetase From Salmonella Typhimurium
pdb|2LGS|A Chain A, Feedback Inhibition Of Fully Unadenylylated Glutamine
Synthetase From Salmonella Typhimurium By Glycine,
Alanine, And Serine
pdb|2LGS|B Chain B, Feedback Inhibition Of Fully Unadenylylated Glutamine
Synthetase From Salmonella Typhimurium By Glycine,
Alanine, And Serine
pdb|2LGS|C Chain C, Feedback Inhibition Of Fully Unadenylylated Glutamine
Synthetase From Salmonella Typhimurium By Glycine,
Alanine, And Serine
pdb|2LGS|D Chain D, Feedback Inhibition Of Fully Unadenylylated Glutamine
Synthetase From Salmonella Typhimurium By Glycine,
Alanine, And Serine
pdb|2LGS|E Chain E, Feedback Inhibition Of Fully Unadenylylated Glutamine
Synthetase From Salmonella Typhimurium By Glycine,
Alanine, And Serine
pdb|2LGS|F Chain F, Feedback Inhibition Of Fully Unadenylylated Glutamine
Synthetase From Salmonella Typhimurium By Glycine,
Alanine, And Serine
pdb|2LGS|G Chain G, Feedback Inhibition Of Fully Unadenylylated Glutamine
Synthetase From Salmonella Typhimurium By Glycine,
Alanine, And Serine
pdb|2LGS|H Chain H, Feedback Inhibition Of Fully Unadenylylated Glutamine
Synthetase From Salmonella Typhimurium By Glycine,
Alanine, And Serine
pdb|2LGS|I Chain I, Feedback Inhibition Of Fully Unadenylylated Glutamine
Synthetase From Salmonella Typhimurium By Glycine,
Alanine, And Serine
pdb|2LGS|J Chain J, Feedback Inhibition Of Fully Unadenylylated Glutamine
Synthetase From Salmonella Typhimurium By Glycine,
Alanine, And Serine
pdb|2LGS|K Chain K, Feedback Inhibition Of Fully Unadenylylated Glutamine
Synthetase From Salmonella Typhimurium By Glycine,
Alanine, And Serine
pdb|2LGS|L Chain L, Feedback Inhibition Of Fully Unadenylylated Glutamine
Synthetase From Salmonella Typhimurium By Glycine,
Alanine, And Serine
Length = 468
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 103/432 (23%), Positives = 174/432 (40%), Gaps = 69/432 (15%)
Query: 405 ESDVSLIRVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTNLS 464
E +V + + + D G+ + +P + N + G + +G ++
Sbjct: 11 EHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEFFEEGKMFDGSSIGGWKGIN--------- 61
Query: 465 GTGEIRLMPDLSTRWRIPWQKQEEMIMADMHLKPG--EPWEYCPREALRKVSRLLKEE-- 520
++ LMPD ST P+ +I+ L+PG + ++ PR ++ L+
Sbjct: 62 -ESDMVLMPDASTAVIDPFFADSTLIIRCDILEPGTLQGYDRDPRSIAKRAEDYLRATGI 120
Query: 521 FNLVLNAGFEIEFYLLKSV-------------------------LREGKEEWVPIDFTPY 555
+ VL G E EF+L + G + P Y
Sbjct: 121 ADTVL-FGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGGY 179
Query: 556 CSTAAYDAVSPVFQEVLADLHSLNISVEQLHAE-AGKGQFEIALGHTVAAKAADNLIFTR 614
D+ + E+ + + + VE H E A GQ E+A K AD + +
Sbjct: 180 FPVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYK 239
Query: 615 EVLRAVARKHGLLATFVP---------------NLWQNGENVFMASDSSSKH-GMSSVGE 658
V+ VA + G ATF+P +L +NG N+F S K+ G+S
Sbjct: 240 YVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLAKNGTNLF----SGDKYAGLSEQAL 295
Query: 659 KFMAGVLHHLSSILAFTAPVPNSYDRIQPNTWSGAYQCWGKENREAPLRTACPPGVKDGV 718
++ GV+ H +I A P NSY R+ P + + NR A +R P V
Sbjct: 296 YYIGGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSARNRSASIRI---PVVASPK 352
Query: 719 VSNFELKSFDGCANPHLGLAAIIASGIDGLRRLCLP-EPIDAN----PASLDGKLQRLPT 773
E++ D ANP+L AA++ +G+DG++ P EP+D N P ++ ++
Sbjct: 353 ARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPGEPMDKNLYDLPPEEAKEIPQVAG 412
Query: 774 SLSESVQALEKD 785
SL E++ AL+ D
Sbjct: 413 SLEEALNALDLD 424
>pdb|2D3A|A Chain A, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|B Chain B, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|C Chain C, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|D Chain D, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|E Chain E, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|F Chain F, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|G Chain G, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|H Chain H, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|I Chain I, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3A|J Chain J, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Methionine Sulfoximine Phosphate
pdb|2D3B|A Chain A, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|B Chain B, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|C Chain C, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|D Chain D, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|E Chain E, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|F Chain F, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|G Chain G, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|H Chain H, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|I Chain I, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3B|J Chain J, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Amppnp And Methionine Sulfoximine
pdb|2D3C|A Chain A, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|B Chain B, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|C Chain C, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|D Chain D, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|E Chain E, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|F Chain F, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|G Chain G, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|H Chain H, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|I Chain I, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
pdb|2D3C|J Chain J, Crystal Structure Of The Maize Glutamine Synthetase
Complexed With Adp And Phosphinothricin Phosphate
Length = 356
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 94/248 (37%), Gaps = 45/248 (18%)
Query: 489 MIMADMHLKPGEPWEYCPREALRKV---SRLLKEEFNLVLNAGFEIEFYLLKSVLREGKE 545
++M D + GEP R + K+ + EE G E E+ LL+
Sbjct: 89 LVMCDCYTPAGEPIPTNKRYSAAKIFSSPEVAAEEPWY----GIEQEYTLLQK-----DT 139
Query: 546 EWV---PIDFTP------YCSTAAYDAVSPVFQEVLADLHS-----LNISVEQLHAEAGK 591
W PI P YC A + F + D H I++ ++ E
Sbjct: 140 NWPLGWPIGGFPGPQGPYYCGIGAEKS----FGRDIVDAHYKACLYAGINISGINGEVMP 195
Query: 592 GQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATF----VPNLWQN-GENVFMASD 646
GQ+E +G +V + D + R +L + G++ TF +P W G + +++
Sbjct: 196 GQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPKPIPGDWNGAGAHTNYSTE 255
Query: 647 SSSKHGMSSVGEKFMAGV-LHHLSSILAFTAP----VPNSYDRIQPNTWSGAYQCWGKEN 701
S K G V + + + L H I A+ + ++ NT+S WG N
Sbjct: 256 SMRKEGGYEVIKAAIEKLKLRHKEHIAAYGEGNERRLTGRHETADINTFS-----WGVAN 310
Query: 702 REAPLRTA 709
R A +R
Sbjct: 311 RGASVRVG 318
>pdb|3O6X|A Chain A, Crystal Structure Of The Type Iii Glutamine Synthetase
From Bacteroides Fragilis
pdb|3O6X|B Chain B, Crystal Structure Of The Type Iii Glutamine Synthetase
From Bacteroides Fragilis
pdb|3O6X|C Chain C, Crystal Structure Of The Type Iii Glutamine Synthetase
From Bacteroides Fragilis
pdb|3O6X|D Chain D, Crystal Structure Of The Type Iii Glutamine Synthetase
From Bacteroides Fragilis
pdb|3O6X|E Chain E, Crystal Structure Of The Type Iii Glutamine Synthetase
From Bacteroides Fragilis
pdb|3O6X|F Chain F, Crystal Structure Of The Type Iii Glutamine Synthetase
From Bacteroides Fragilis
Length = 729
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 14/137 (10%)
Query: 508 EALRKVSRLLKEEFNLVL-NAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDA--- 563
+A +V +L + V N G+E E++L+ + L + + T ++A D
Sbjct: 192 KAATEVCQLFDKNITRVFTNLGWEQEYFLVDTSLYNARPDLRLTGRTLMGHSSAKDQQLE 251
Query: 564 ----------VSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFT 613
V+ +E+ + H L I V+ H E QFE+A A D+
Sbjct: 252 DHYFGSIPPRVTAFMKELEIECHKLGIPVKTRHNEVAPNQFELAPIFENCNLANDHNQLV 311
Query: 614 REVLRAVARKHGLLATF 630
++++ +ARKH F
Sbjct: 312 MDLMKRIARKHHFAVLF 328
>pdb|2J9I|A Chain A, Lengsin Is A Survivor Of An Ancient Family Of Class I
Glutamine Synthetases In Eukaryotes That Has Undergone
Evolutionary Re-Engineering For A Tissue-Specific Role
In The Vertebrate Eye Lens.
pdb|2J9I|B Chain B, Lengsin Is A Survivor Of An Ancient Family Of Class I
Glutamine Synthetases In Eukaryotes That Has Undergone
Evolutionary Re-Engineering For A Tissue-Specific Role
In The Vertebrate Eye Lens.
pdb|2J9I|C Chain C, Lengsin Is A Survivor Of An Ancient Family Of Class I
Glutamine Synthetases In Eukaryotes That Has Undergone
Evolutionary Re-Engineering For A Tissue-Specific Role
In The Vertebrate Eye Lens.
pdb|2J9I|D Chain D, Lengsin Is A Survivor Of An Ancient Family Of Class I
Glutamine Synthetases In Eukaryotes That Has Undergone
Evolutionary Re-Engineering For A Tissue-Specific Role
In The Vertebrate Eye Lens.
pdb|2J9I|E Chain E, Lengsin Is A Survivor Of An Ancient Family Of Class I
Glutamine Synthetases In Eukaryotes That Has Undergone
Evolutionary Re-Engineering For A Tissue-Specific Role
In The Vertebrate Eye Lens.
pdb|2J9I|F Chain F, Lengsin Is A Survivor Of An Ancient Family Of Class I
Glutamine Synthetases In Eukaryotes That Has Undergone
Evolutionary Re-Engineering For A Tissue-Specific Role
In The Vertebrate Eye Lens.
pdb|2J9I|G Chain G, Lengsin Is A Survivor Of An Ancient Family Of Class I
Glutamine Synthetases In Eukaryotes That Has Undergone
Evolutionary Re-Engineering For A Tissue-Specific Role
In The Vertebrate Eye Lens.
pdb|2J9I|H Chain H, Lengsin Is A Survivor Of An Ancient Family Of Class I
Glutamine Synthetases In Eukaryotes That Has Undergone
Evolutionary Re-Engineering For A Tissue-Specific Role
In The Vertebrate Eye Lens.
pdb|2J9I|I Chain I, Lengsin Is A Survivor Of An Ancient Family Of Class I
Glutamine Synthetases In Eukaryotes That Has Undergone
Evolutionary Re-Engineering For A Tissue-Specific Role
In The Vertebrate Eye Lens.
pdb|2J9I|J Chain J, Lengsin Is A Survivor Of An Ancient Family Of Class I
Glutamine Synthetases In Eukaryotes That Has Undergone
Evolutionary Re-Engineering For A Tissue-Specific Role
In The Vertebrate Eye Lens.
pdb|2J9I|K Chain K, Lengsin Is A Survivor Of An Ancient Family Of Class I
Glutamine Synthetases In Eukaryotes That Has Undergone
Evolutionary Re-Engineering For A Tissue-Specific Role
In The Vertebrate Eye Lens.
pdb|2J9I|L Chain L, Lengsin Is A Survivor Of An Ancient Family Of Class I
Glutamine Synthetases In Eukaryotes That Has Undergone
Evolutionary Re-Engineering For A Tissue-Specific Role
In The Vertebrate Eye Lens
Length = 421
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 723 ELKSFDGCANPHLGLAAIIASGIDGLRRLCLPEPIDANPASLDGKLQRLPTSLSESVQAL 782
E K+ ANP+L LAA +A+G+DG++ A A+ +P + +++ AL
Sbjct: 319 ENKAGAAAANPYLVLAATVAAGLDGIQSAGAAAGAAAADAAAAAP-SEIPGKMEDALAAL 377
Query: 783 EKD-DILRDMIGEKLL 797
E+D + L+ +GE +
Sbjct: 378 EQDAECLKAGLGEAFI 393
>pdb|4IFQ|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nup192,
Residues 2 To 960 [scnup192(2-960)]
Length = 970
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 546 EWVPIDF-TPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQF---EIALGHT 601
+W I F T Y S + + +F+EVL DL +LN++ ++L A + Q EI L
Sbjct: 4 KWSAIPFQTLYRSIESGEFDFDLFKEVLPDLQNLNLNTDKLKNNASRSQLEKGEIELSDG 63
Query: 602 VAAKAADNLIF 612
K IF
Sbjct: 64 STFKVNQEFIF 74
>pdb|3AW8|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermus Thermophilus Hb8
pdb|3AW8|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermus Thermophilus Hb8
Length = 369
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 746 DGLRRLCLPEPIDANPASLDGKLQRLPTSLSESVQALE----KDDILRDMIG---EKLLI 798
+GL+R+ LP + DGK Q L + E+++AL+ + IL + E L+
Sbjct: 125 EGLKRVGLPALLKTRRGGYDGKGQALVRTEEEALEALKALGGRGLILEGFVPFDREVSLL 184
Query: 799 AIKGIRKAEINYYSLNKDAY 818
A++G R E+ +Y L ++ +
Sbjct: 185 AVRG-RTGEVAFYPLVENRH 203
>pdb|2UU7|A Chain A, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|B Chain B, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|C Chain C, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|D Chain D, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|E Chain E, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|F Chain F, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|G Chain G, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|H Chain H, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|I Chain I, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|J Chain J, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|K Chain K, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|L Chain L, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|M Chain M, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|N Chain N, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|O Chain O, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
Length = 381
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 580 ISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVP 632
I + +AE Q+E +G D+L R +L V G++ATF P
Sbjct: 188 IKIAGTNAEVMPAQWEFQIGPCEGIDMGDHLWVARFILHRVCEDFGVIATFDP 240
>pdb|2OJW|A Chain A, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2OJW|B Chain B, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2OJW|C Chain C, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2OJW|D Chain D, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2OJW|E Chain E, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2QC8|A Chain A, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|B Chain B, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|C Chain C, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|D Chain D, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|E Chain E, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|F Chain F, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|G Chain G, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|H Chain H, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|I Chain I, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|J Chain J, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
Length = 384
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
Query: 580 ISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATF----VPNLW 635
+ + +AE Q+E +G D+L R +L V G++ATF +P W
Sbjct: 207 VKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNW 266
Query: 636 QNGENVFMASDSSSKHGMSSVGEKFMAGVLHHLS 669
NG ++ S+K G K++ + LS
Sbjct: 267 -NGAGCH--TNFSTKAMREENGLKYIEEAIEKLS 297
>pdb|3HI5|H Chain H, Crystal Structure Of Fab Fragment Of Al-57
pdb|3HI6|H Chain H, Crystal Structure Of Intermediate Affinity I Domain Of
Integrin Lfa-1 With The Fab Fragment Of Its Antibody
Al-57
pdb|3HI6|X Chain X, Crystal Structure Of Intermediate Affinity I Domain Of
Integrin Lfa-1 With The Fab Fragment Of Its Antibody
Al-57
Length = 220
Score = 29.6 bits (65), Expect = 7.0, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 10/97 (10%)
Query: 606 AADNLIFTREVLRAVARKHGLLATFVPNLWQNGENVFMASDSSSKHGMSSVGEKFMAGVL 665
AA F+R V+ V + G +V +W +G N + A + +S K +
Sbjct: 23 AASGFTFSRYVMWWVRQAPGKGLEWVSYIWPSGGNTYYADSVKGRFTISRDNSK--NTLY 80
Query: 666 HHLSSILAFTAPV---PNSYDRIQPNTWSGAYQCWGK 699
++S+ A V +SYD WS A+ WG+
Sbjct: 81 LQMNSLRAEDTAVYYCASSYD-----FWSNAFDIWGQ 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,357,643
Number of Sequences: 62578
Number of extensions: 1027499
Number of successful extensions: 2350
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2318
Number of HSP's gapped (non-prelim): 17
length of query: 825
length of database: 14,973,337
effective HSP length: 107
effective length of query: 718
effective length of database: 8,277,491
effective search space: 5943238538
effective search space used: 5943238538
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)