Query 003372
Match_columns 825
No_of_seqs 450 out of 2777
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 22:16:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003372.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003372hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00653 GlnA glutamine synth 100.0 1.3E-93 2.8E-98 810.5 44.8 405 400-820 5-455 (460)
2 TIGR03105 gln_synth_III glutam 100.0 7.9E-91 1.7E-95 783.6 44.5 393 405-820 7-430 (435)
3 PRK09469 glnA glutamine synthe 100.0 1.1E-90 2.5E-95 787.2 44.8 403 400-820 8-463 (469)
4 COG0174 GlnA Glutamine synthet 100.0 1E-90 2.3E-95 771.8 42.1 403 400-820 7-437 (443)
5 PLN02284 glutamine synthetase 100.0 6.6E-65 1.4E-69 558.8 31.8 317 408-746 21-353 (354)
6 PLN03036 glutamine synthetase; 100.0 1.8E-60 3.8E-65 529.3 31.9 317 410-745 80-412 (432)
7 PF00120 Gln-synt_C: Glutamine 100.0 3.3E-61 7.1E-66 512.2 16.5 236 503-744 1-259 (259)
8 PRK02925 glucuronate isomerase 100.0 4.6E-52 1E-56 456.5 28.6 361 5-381 18-466 (466)
9 COG1904 UxaC Glucuronate isome 100.0 8E-49 1.7E-53 417.6 25.1 359 5-379 17-462 (463)
10 PF02614 UxaC: Glucuronate iso 100.0 5.4E-46 1.2E-50 416.7 18.0 359 4-378 16-462 (462)
11 KOG0683 Glutamine synthetase [ 100.0 9.7E-30 2.1E-34 266.7 16.2 276 401-707 22-309 (380)
12 COG2159 Predicted metal-depend 99.9 2.9E-24 6.4E-29 231.6 19.2 196 153-382 87-292 (293)
13 PF04909 Amidohydro_2: Amidohy 99.8 4.3E-19 9.4E-24 189.5 9.2 202 153-380 59-273 (273)
14 COG3968 Uncharacterized protei 99.6 1.2E-14 2.5E-19 155.6 17.2 217 524-752 215-508 (724)
15 cd01311 PDC_hydrolase 2-pyrone 99.4 1.2E-12 2.7E-17 140.1 15.1 140 212-377 108-263 (263)
16 PF03951 Gln-synt_N: Glutamine 99.4 1E-12 2.2E-17 115.1 7.2 80 407-497 1-84 (84)
17 COG3618 Predicted metal-depend 99.2 1.1E-09 2.3E-14 114.7 18.1 147 209-380 119-278 (279)
18 cd01310 TatD_DNAse TatD like p 99.0 3E-09 6.4E-14 112.6 11.4 147 210-379 104-251 (251)
19 KOG4245 Predicted metal-depend 98.8 1.8E-08 3.9E-13 98.6 8.4 199 154-383 55-290 (297)
20 TIGR00010 hydrolase, TatD fami 98.6 5.5E-07 1.2E-11 95.4 15.6 143 212-380 106-252 (252)
21 COG0418 PyrC Dihydroorotase [N 97.8 0.00065 1.4E-08 71.7 16.4 215 145-383 47-306 (344)
22 TIGR02050 gshA_cyan_rel unchar 97.8 0.00069 1.5E-08 73.5 17.0 193 526-754 1-259 (287)
23 PRK10812 putative DNAse; Provi 97.8 0.00018 3.9E-09 77.2 11.8 140 215-381 112-257 (265)
24 cd00530 PTE Phosphotriesterase 97.7 0.00054 1.2E-08 74.5 14.6 149 215-378 137-293 (293)
25 PRK13515 carboxylate-amine lig 97.7 0.00088 1.9E-08 75.5 15.6 186 524-750 5-259 (371)
26 PRK11449 putative deoxyribonuc 97.7 0.00027 5.7E-09 75.6 10.9 139 215-380 115-258 (258)
27 PRK13517 carboxylate-amine lig 97.6 0.0017 3.7E-08 73.2 17.0 128 524-679 10-168 (373)
28 COG0084 TatD Mg-dependent DNas 97.5 0.00058 1.3E-08 72.4 10.7 140 215-380 113-256 (256)
29 PRK13516 gamma-glutamyl:cystei 97.4 0.0021 4.7E-08 72.1 14.3 128 524-679 11-169 (373)
30 PF01026 TatD_DNase: TatD rela 97.4 0.00085 1.8E-08 71.6 10.3 138 214-379 111-255 (255)
31 PRK09875 putative hydrolase; P 97.2 0.013 2.9E-07 63.6 16.5 147 219-379 144-292 (292)
32 PRK10425 DNase TatD; Provision 97.1 0.0029 6.2E-08 67.7 10.2 141 215-380 109-258 (258)
33 cd01294 DHOase Dihydroorotase 97.0 0.006 1.3E-07 67.8 12.8 156 213-381 112-298 (335)
34 COG2170 Uncharacterized conser 96.8 0.01 2.2E-07 64.2 11.5 151 587-750 43-257 (369)
35 COG1099 Predicted metal-depend 96.6 0.13 2.8E-06 52.6 17.2 143 212-381 112-254 (254)
36 PRK05451 dihydroorotase; Provi 96.5 0.038 8.2E-07 61.7 14.1 79 212-295 116-199 (345)
37 PLN02599 dihydroorotase 96.1 0.081 1.8E-06 59.4 13.8 159 213-382 135-324 (364)
38 PF02126 PTE: Phosphotriestera 96.1 0.037 8.1E-07 60.6 10.8 151 216-378 144-307 (308)
39 PRK13518 carboxylate-amine lig 95.9 0.056 1.2E-06 60.3 11.4 126 526-679 14-170 (357)
40 KOG0683 Glutamine synthetase [ 95.5 0.0031 6.8E-08 68.1 -0.6 86 659-746 279-368 (380)
41 cd01292 metallo-dependent_hydr 95.2 0.13 2.8E-06 54.1 10.7 104 212-328 131-237 (275)
42 KOG3020 TatD-related DNase [Re 94.5 0.79 1.7E-05 49.5 14.3 95 215-328 136-231 (296)
43 COG1831 Predicted metal-depend 94.5 0.29 6.3E-06 51.4 10.4 138 215-382 146-284 (285)
44 KOG2902 Dihydroorotase [Nucleo 94.3 0.15 3.3E-06 52.4 7.7 115 215-331 118-251 (344)
45 PLN02611 glutamate--cysteine l 94.2 0.14 3.1E-06 59.1 8.4 45 584-629 123-168 (482)
46 TIGR02048 gshA_cyano glutamate 93.9 0.3 6.4E-06 55.1 9.9 90 584-679 31-151 (376)
47 cd01297 D-aminoacylase D-amino 92.9 1.7 3.6E-05 49.9 14.4 150 210-381 195-355 (415)
48 TIGR01436 glu_cys_lig_pln glut 92.9 0.61 1.3E-05 53.7 10.6 45 584-629 80-125 (446)
49 COG2355 Zn-dependent dipeptida 92.8 2.5 5.3E-05 46.2 14.5 137 218-379 153-308 (313)
50 PF01244 Peptidase_M19: Membra 92.3 0.54 1.2E-05 51.9 8.9 70 300-379 247-319 (320)
51 cd01302 Cyclic_amidohydrolases 92.3 2.5 5.4E-05 47.1 14.3 145 213-381 114-287 (337)
52 cd01301 rDP_like renal dipepti 92.1 2 4.2E-05 47.3 12.8 68 301-377 240-309 (309)
53 PF04107 GCS2: Glutamate-cyste 90.8 0.26 5.7E-06 53.6 4.5 92 582-678 34-159 (288)
54 TIGR00856 pyrC_dimer dihydroor 90.4 0.57 1.2E-05 52.3 6.7 79 212-294 113-195 (341)
55 cd01307 Met_dep_hydrolase_B Me 89.6 10 0.00022 42.1 15.9 134 218-381 153-297 (338)
56 cd01314 D-HYD D-hydantoinases 89.5 6.4 0.00014 45.5 14.8 161 213-383 161-378 (447)
57 COG1735 Php Predicted metal-de 88.7 9.3 0.0002 41.4 13.7 156 209-381 147-315 (316)
58 TIGR01975 isoAsp_dipep isoaspa 84.9 8.8 0.00019 43.7 12.1 140 227-381 188-344 (389)
59 PRK09357 pyrC dihydroorotase; 84.0 8.8 0.00019 44.0 11.8 162 214-382 159-365 (423)
60 PLN02942 dihydropyrimidinase 83.9 22 0.00048 41.6 15.3 164 213-382 166-383 (486)
61 cd01309 Met_dep_hydrolase_C Me 83.7 13 0.00028 41.8 12.6 142 212-384 178-323 (359)
62 PLN02795 allantoinase 82.9 24 0.00052 41.7 15.0 162 212-381 210-428 (505)
63 PRK07369 dihydroorotase; Provi 82.0 16 0.00035 42.0 12.8 160 215-381 163-367 (418)
64 cd01315 L-HYD_ALN L-Hydantoina 81.7 18 0.00039 41.8 13.3 164 212-382 160-374 (447)
65 TIGR00857 pyrC_multi dihydroor 81.3 25 0.00055 40.2 14.1 162 212-381 145-351 (411)
66 TIGR03444 gshA_related glutama 77.3 12 0.00025 42.4 9.2 38 591-628 69-107 (390)
67 cd01299 Met_dep_hydrolase_A Me 76.9 1.2E+02 0.0027 33.3 17.6 25 211-235 157-181 (342)
68 cd01317 DHOase_IIa Dihydroorot 74.3 44 0.00095 37.7 13.3 34 344-381 292-325 (374)
69 TIGR02967 guan_deamin guanine 74.0 66 0.0014 36.5 14.7 155 213-382 185-344 (401)
70 PRK07583 cytosine deaminase-li 69.8 59 0.0013 37.5 13.2 56 212-271 210-265 (438)
71 PRK08044 allantoinase; Provisi 69.2 63 0.0014 37.5 13.3 34 344-381 342-375 (449)
72 PRK09059 dihydroorotase; Valid 66.7 63 0.0014 37.3 12.5 161 213-381 165-370 (429)
73 PRK09228 guanine deaminase; Pr 66.5 96 0.0021 35.8 14.0 109 213-327 210-323 (433)
74 PF04273 DUF442: Putative phos 66.1 8.2 0.00018 35.7 4.1 68 167-237 26-96 (110)
75 cd04869 ACT_GcvR_2 ACT domains 65.8 12 0.00026 31.8 5.0 65 566-632 11-81 (81)
76 cd01303 GDEase Guanine deamina 65.1 1.1E+02 0.0025 35.1 14.3 106 214-327 208-320 (429)
77 PRK08417 dihydroorotase; Provi 65.1 1.1E+02 0.0025 34.5 14.1 166 212-381 128-335 (386)
78 PRK08323 phenylhydantoinase; V 64.5 86 0.0019 36.2 13.3 32 346-381 345-376 (459)
79 PF06877 RraB: Regulator of ri 64.4 44 0.00094 30.2 8.6 94 507-627 3-98 (104)
80 TIGR02033 D-hydantoinase D-hyd 64.0 1.3E+02 0.0028 34.7 14.5 35 344-382 345-379 (454)
81 PRK09061 D-glutamate deacylase 62.7 1.7E+02 0.0036 34.6 15.3 34 342-379 400-434 (509)
82 PRK06189 allantoinase; Provisi 62.6 73 0.0016 36.9 12.1 116 259-381 229-373 (451)
83 PRK07213 chlorohydrolase; Prov 60.4 1.2E+02 0.0027 34.0 13.2 147 211-381 176-326 (375)
84 TIGR03178 allantoinase allanto 59.9 90 0.002 36.0 12.3 32 346-381 339-370 (443)
85 PF13740 ACT_6: ACT domain; PD 59.0 26 0.00055 29.8 5.7 62 566-630 14-75 (76)
86 PRK10657 isoaspartyl dipeptida 57.6 1.2E+02 0.0026 34.2 12.5 141 229-382 192-344 (388)
87 TIGR03121 one_C_dehyd_A formyl 57.0 1E+02 0.0022 36.7 11.9 61 317-381 375-450 (556)
88 PRK08204 hypothetical protein; 55.9 1.9E+02 0.0042 33.2 14.1 102 215-327 202-303 (449)
89 PRK02382 dihydroorotase; Provi 55.9 1.1E+02 0.0024 35.3 12.1 155 215-381 162-361 (443)
90 PRK13404 dihydropyrimidinase; 53.5 1.7E+02 0.0036 34.3 13.1 34 344-381 352-385 (477)
91 cd01295 AdeC Adenine deaminase 52.6 1.8E+02 0.0039 33.3 13.1 129 216-380 123-254 (422)
92 COG3453 Uncharacterized protei 50.3 35 0.00075 32.0 5.2 71 167-237 27-97 (130)
93 cd04872 ACT_1ZPV ACT domain pr 48.4 24 0.00053 30.8 3.9 67 566-633 13-79 (88)
94 PRK00194 hypothetical protein; 48.3 24 0.00053 30.8 4.0 67 566-633 15-81 (90)
95 cd04870 ACT_PSP_1 CT domains f 47.9 35 0.00077 28.7 4.8 65 566-632 11-75 (75)
96 cd01300 YtcJ_like YtcJ_like me 46.9 91 0.002 36.3 9.6 68 211-282 292-359 (479)
97 cd01308 Isoaspartyl-dipeptidas 46.5 2.1E+02 0.0046 32.1 12.3 72 305-381 263-342 (387)
98 PRK08418 chlorohydrolase; Prov 46.4 2.5E+02 0.0054 32.1 12.9 103 214-327 190-313 (408)
99 TIGR03583 EF_0837 probable ami 45.9 1.7E+02 0.0036 32.8 11.2 22 356-381 292-313 (365)
100 cd00443 ADA_AMPD Adenosine/AMP 44.8 4.5E+02 0.0097 28.7 15.3 93 215-329 154-257 (305)
101 smart00874 B5 tRNA synthetase 44.6 35 0.00076 28.4 4.2 50 569-626 22-71 (71)
102 PRK06151 N-ethylammeline chlor 44.6 1.7E+02 0.0037 34.3 11.4 110 211-326 218-338 (488)
103 cd01316 CAD_DHOase The eukaryo 44.5 1.7E+02 0.0037 32.7 10.9 113 260-382 146-282 (344)
104 KOG0558 Dihydrolipoamide trans 44.4 20 0.00043 39.2 3.2 54 564-633 248-302 (474)
105 PF03102 NeuB: NeuB family; I 44.1 32 0.00068 36.5 4.6 68 216-295 102-180 (241)
106 cd01305 archeal_chlorohydrolas 42.9 1.6E+02 0.0035 31.1 10.1 98 216-328 127-224 (263)
107 PRK08203 hydroxydechloroatrazi 41.7 1.3E+02 0.0028 34.8 9.7 107 213-327 213-323 (451)
108 PRK09045 N-ethylammeline chlor 41.1 1.7E+02 0.0036 33.8 10.5 106 214-327 202-311 (443)
109 cd01318 DHOase_IIb Dihydroorot 39.8 3.6E+02 0.0078 30.2 12.6 115 259-382 168-308 (361)
110 PRK15493 5-methylthioadenosine 39.7 1.3E+02 0.0027 34.8 9.2 153 213-381 196-355 (435)
111 cd01298 ATZ_TRZ_like TRZ/ATZ f 39.2 1.3E+02 0.0029 33.7 9.3 108 213-328 193-304 (411)
112 cd01304 FMDH_A Formylmethanofu 38.6 3.3E+02 0.0071 32.5 12.2 18 364-381 430-447 (541)
113 COG0402 SsnA Cytosine deaminas 38.1 4.9E+02 0.011 29.8 13.6 125 189-329 169-309 (421)
114 PRK06687 chlorohydrolase; Vali 35.5 2.1E+02 0.0045 32.7 10.0 106 213-326 195-304 (419)
115 TIGR01244 conserved hypothetic 35.5 77 0.0017 30.2 5.5 18 167-184 26-43 (135)
116 PTZ00372 endonuclease 4-like p 34.9 6.1E+02 0.013 29.2 13.3 111 215-327 219-350 (413)
117 PTZ00124 adenosine deaminase; 34.6 1.5E+02 0.0032 33.5 8.4 84 147-236 139-228 (362)
118 PRK08393 N-ethylammeline chlor 33.8 2.9E+02 0.0063 31.6 10.9 107 213-327 188-298 (424)
119 PRK06361 hypothetical protein; 33.7 3E+02 0.0065 28.0 10.0 96 265-380 115-210 (212)
120 KOG4127 Renal dipeptidase [Pos 33.4 1.3E+02 0.0029 33.5 7.3 68 303-380 320-390 (419)
121 PRK09237 dihydroorotase; Provi 33.4 7.3E+02 0.016 27.8 14.3 129 222-381 176-316 (380)
122 cd04893 ACT_GcvR_1 ACT domains 33.3 1.1E+02 0.0024 25.9 5.6 63 566-631 13-75 (77)
123 COG3364 Zn-ribbon containing p 32.8 28 0.00062 31.3 1.8 27 573-600 52-78 (112)
124 COG3572 GshA Gamma-glutamylcys 31.0 80 0.0017 35.5 5.2 45 586-631 92-137 (456)
125 cd01312 Met_dep_hydrolase_D Me 30.3 3.6E+02 0.0077 30.5 10.7 106 215-328 164-291 (381)
126 PF04468 PSP1: PSP1 C-terminal 30.1 60 0.0013 28.6 3.5 61 565-630 25-85 (88)
127 PRK12394 putative metallo-depe 29.6 8.4E+02 0.018 27.3 15.1 140 213-381 172-321 (379)
128 PRK07228 N-ethylammeline chlor 29.2 7.5E+02 0.016 28.3 13.4 107 213-327 198-308 (445)
129 PRK07203 putative chlorohydrol 29.1 1.8E+02 0.0038 33.6 8.1 106 214-327 205-314 (442)
130 PF03484 B5: tRNA synthetase B 28.9 75 0.0016 26.6 3.7 47 569-626 22-70 (70)
131 COG3964 Predicted amidohydrola 28.4 8.4E+02 0.018 26.9 12.0 134 219-381 177-320 (386)
132 cd01306 PhnM PhnM is believed 27.6 8.8E+02 0.019 26.9 15.7 44 186-236 142-185 (325)
133 PRK06038 N-ethylammeline chlor 26.1 4.2E+02 0.0091 30.4 10.5 107 213-327 189-299 (430)
134 PRK07627 dihydroorotase; Provi 25.1 4.7E+02 0.01 30.1 10.6 82 213-294 160-259 (425)
135 cd01296 Imidazolone-5PH Imidaz 24.8 8.2E+02 0.018 27.0 12.4 24 213-236 192-215 (371)
136 PRK12393 amidohydrolase; Provi 24.5 7.9E+02 0.017 28.4 12.5 108 212-327 216-327 (457)
137 cd01321 ADGF Adenosine deamina 24.1 1.9E+02 0.0041 32.3 6.9 85 147-237 105-204 (345)
138 PRK09236 dihydroorotase; Revie 23.7 1.1E+03 0.024 27.1 13.4 28 350-381 341-368 (444)
139 COG0413 PanB Ketopantoate hydr 23.6 3.6E+02 0.0077 28.9 8.2 56 178-237 82-140 (268)
140 COG1550 Uncharacterized protei 23.5 71 0.0015 28.5 2.6 36 489-525 5-40 (95)
141 PRK11589 gcvR glycine cleavage 23.5 1.9E+02 0.0041 29.5 6.1 62 566-633 107-178 (190)
142 PRK09230 cytosine deaminase; P 23.2 7.5E+02 0.016 28.3 11.8 57 213-273 194-250 (426)
143 cd04875 ACT_F4HF-DF N-terminal 23.0 1.7E+02 0.0037 24.3 4.9 60 566-627 11-73 (74)
144 cd04882 ACT_Bt0572_2 C-termina 22.8 2E+02 0.0044 22.6 5.2 50 567-627 12-63 (65)
145 cd01313 Met_dep_hydrolase_E Me 22.5 7.5E+02 0.016 28.2 11.6 106 213-327 206-315 (418)
146 PRK06886 hypothetical protein; 22.5 1E+03 0.022 26.4 12.1 50 214-271 162-215 (329)
147 COG2089 SpsE Sialic acid synth 22.4 1.7E+02 0.0037 32.3 5.7 70 217-295 137-214 (347)
148 TIGR01224 hutI imidazoloneprop 21.9 9E+02 0.02 26.8 12.0 22 215-236 198-219 (377)
149 PRK13011 formyltetrahydrofolat 21.6 1.4E+02 0.0031 32.4 5.1 66 566-633 19-86 (286)
150 TIGR03569 NeuB_NnaB N-acetylne 20.7 55 0.0012 36.4 1.7 70 217-293 123-200 (329)
No 1
>TIGR00653 GlnA glutamine synthetase, type I. Alternate name: glutamate--ammonia ligase. This model represents the dodecameric form, which can be subdivided into 1-alpha and 1-beta forms. The phylogeny of the 1-alpha and 1-beta forms appears polyphyletic. E. coli, Synechocystis PCC6803, Aquifex aeolicus, and the crenarcheon Sulfolobus acidocaldarius have form 1-beta, while Bacillus subtilis, Thermotoga maritima, and various euryarchaea has form 1-alpha. The 1-beta dodecamer from the crenarcheon Sulfolobus acidocaldarius differs from that in E. coli in that it is not regulated by adenylylation.
Probab=100.00 E-value=1.3e-93 Score=810.48 Aligned_cols=405 Identities=29% Similarity=0.455 Sum_probs=361.1
Q ss_pred hhhhccCCceEEEEEEecCCCCceeEEeechhhhhHHhhccccccccccccccccCCCCCCCCCCCCCcEEEEEecCCcE
Q 003372 400 KSDAFESDVSLIRVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTNLSGTGEIRLMPDLSTRW 479 (825)
Q Consensus 400 ~~~~~~~~i~~v~l~~~D~~G~~R~k~vp~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~~~~~~d~~L~PD~sT~~ 479 (825)
.++.+ ++|+||+++|+|++|++|+|.||+++|.+...++|++++.+++. +....+.+|++|+||++|++
T Consensus 5 ~~l~~-~~i~~v~~~~~Dl~G~~rgk~vp~~~~~~~~~~~G~~~~~~~~~----------~~~~~~~~D~~l~PD~~Tl~ 73 (460)
T TIGR00653 5 KLIKE-ENVKFVDLRFTDIKGKPQHVEIPASALDKEAFEEGIMFDGSSIR----------GFQGIEESDMLLKPDPSTAV 73 (460)
T ss_pred HHHHh-CCCcEEEEEEECCCCCEeeEEEeHHHhhHHHhcCCeeccccccc----------ccccCCCCcEEEeccCCcce
Confidence 35554 78999999999999999999999999976334788888766541 11113568999999999999
Q ss_pred eccCCC-cccceeEEEEcC-CCCcCCCChHHHHHHHHHHHHHhcCceEEEeeeeEEEEEeecccC---------------
Q 003372 480 RIPWQK-QEEMIMADMHLK-PGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLRE--------------- 542 (825)
Q Consensus 480 ~~p~~~-~~a~v~~~~~~~-~g~p~~~~pR~~L~~~~~~~~~~~g~~~~~g~E~EF~l~~~~~~~--------------- 542 (825)
++||.+ ++++|+|++++. ||+|++.|||++|+|++++++++.|+++++|+|+||||++.....
T Consensus 74 ~~pw~~~~~a~v~~d~~~~~dg~p~~~~PR~~L~r~~~~l~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~ 153 (460)
T TIGR00653 74 IDPWRAEKTLRVICDVYEPFTGEPYERDPRSIAKRAEEYLKSGIGDTAYFGPEPEFFLFDSVEFGSLANGSFYEVDSEEG 153 (460)
T ss_pred eccCCCCCcEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHhCCCCceeEEcceEEEEEecCccCcccccceeeeccccc
Confidence 999965 489999999998 999999999999999999999668999999999999999853211
Q ss_pred ------CCCCCccCCCCCcCcCCccCCchHHHHHHHHHHHhCCCCeeeeecCCCCCceEEecCcChHHHHHHHHHHHHHH
Q 003372 543 ------GKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREV 616 (825)
Q Consensus 543 ------~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~r~~ 616 (825)
+...+.|.+.++||+..+++...+++++|++.|+++||+|+++|+|+|||||||++.|+++|+|||+++++|++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~v~~~~~E~gpGQ~Ei~l~~~~~l~aAD~~~~~k~~ 233 (460)
T TIGR00653 154 RWNEESGNRGYKPRDKGGYFPVAPTDTAVDIRREMVLYLEQLGFDVEVHHHEVATGQHEIDFKFDTLLKTADDIQTYKYV 233 (460)
T ss_pred cccccCCcCCCcccCCccccCCCCcccHHHHHHHHHHHHHHcCCCceeeecCcCCCceeEecCCCCHHHHHHHHHHHHHH
Confidence 11234566666688888888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCeEEeccc---------------ccCCCCcccccCCCCCCCCCcHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q 003372 617 LRAVARKHGLLATFVPN---------------LWQNGENVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVPNS 681 (825)
Q Consensus 617 i~~iA~~~Gl~AtF~pK---------------l~~~g~n~f~~~~~~~~~~ls~~~~~fiaGil~h~~al~a~~~P~~nS 681 (825)
||+||++||+.|||||| +|++|+|+|. +++++.+||+++++||||||+|++++++|++||+||
T Consensus 234 ik~vA~~~G~~ATFmpKP~~~~~GSG~H~H~Sl~d~g~n~F~--d~~~~~~lS~~~~~fiaGiL~h~~~l~a~~~PtvNS 311 (460)
T TIGR00653 234 VKNVARKHGKTATFMPKPLFGDNGSGMHCHQSLWKDGENLFA--GEEGYAGLSETALYYIGGILKHAKALAAFTNPTVNS 311 (460)
T ss_pred HHHHHHHhCCEEEEecccCCCCCcCceeEEECccCCCeeccC--CCCCCcccCHHHHHHHHHHHHHHHHhhhHhcCCCcc
Confidence 99999999999999999 6778888887 555566799999999999999999999999999999
Q ss_pred ccCCCCCCcCCcccccccCCCCCcccccCCCCCCCCCcceEEecCCCCCCChHHHHHHHHHHHHHHHhc-cCCCCCCCCC
Q 003372 682 YDRIQPNTWSGAYQCWGKENREAPLRTACPPGVKDGVVSNFELKSFDGCANPHLGLAAIIASGIDGLRR-LCLPEPIDAN 760 (825)
Q Consensus 682 Y~Rl~~g~~ap~~~~WG~~NR~a~iRv~~~~~~~~~~~~~~E~R~~d~~aNPYL~lAailaAgl~Gi~~-l~~~~~~~~~ 760 (825)
||||+|++|||++++||.+||+++||||. +. +...+|||+|++|++|||||++||+|+||++||++ ++|++|+.+|
T Consensus 312 YkRl~p~~~ap~~~~WG~~NR~a~iRvp~--~~-~~~~~riE~R~~da~aNPYLalAa~laAGl~Gi~~~l~p~~~~~~~ 388 (460)
T TIGR00653 312 YKRLVPGYEAPVYLAYSARNRSALIRIPA--SG-NPKAKRIEFRFPDPSANPYLAFAAMLMAGLDGIKNKIDPGEPVDKN 388 (460)
T ss_pred hhhcCCCCcCcceeecccCCCCceEEecC--CC-CCcCceEEecCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCcCc
Confidence 99999999999999999999999999986 21 12357999999999999999999999999999999 9999999999
Q ss_pred cccccC------CCCCCCcCHHHHHHHHhcC-cHHHhhhhHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 003372 761 PASLDG------KLQRLPTSLSESVQALEKD-DILRDMIGEKLLIAIKGIRKAEINYYSLNKDAYKQ 820 (825)
Q Consensus 761 ~~~~~~------~~~~LP~sl~eAl~~l~~d-~~l~~~lG~~~v~~y~~~k~~E~~~~~~~~~~~~~ 820 (825)
++.++. +.+.||.||.|||++|++| .+++++||++||+.|+++|++||++|.+.+++|+.
T Consensus 389 ~~~~~~~~~~~~~~~~LP~sL~eAl~~l~~d~~~l~~~lG~~~v~~y~~~K~~E~~~~~~~vt~wE~ 455 (460)
T TIGR00653 389 LYELSPEELREKGIPQLPGSLEEALDELESDHLVEGGVFGEEFIEAFIELKRKEWDPYRLRPHPWEF 455 (460)
T ss_pred cccCCHHHHhhcCCCCCCcCHHHHHHHHHhChHHHhhhcCHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 986531 5678999999999999999 99999999999999999999999999999999987
No 2
>TIGR03105 gln_synth_III glutamine synthetase, type III. This family consists of the type III isozyme of glutamine synthetase, originally described in Rhizobium meliloti, where types I and II also occur.
Probab=100.00 E-value=7.9e-91 Score=783.61 Aligned_cols=393 Identities=29% Similarity=0.508 Sum_probs=348.3
Q ss_pred cCCceEEEEEEecCCCCceeEEeechhhhhHHhhccccccccccccccccCCCCCCCCCCCCCcEEEEEecCCcEeccCC
Q 003372 405 ESDVSLIRVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTNLSGTGEIRLMPDLSTRWRIPWQ 484 (825)
Q Consensus 405 ~~~i~~v~l~~~D~~G~~R~k~vp~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~~~~~~d~~L~PD~sT~~~~p~~ 484 (825)
+.+|++|+++|+|++|++|+|.||+++|.+. .++|++++.+++.+... ..+.+|++|+||++|++++||.
T Consensus 7 ~~~i~~v~~~~~D~~G~~r~k~vp~~~~~~~-~~~G~~~~~~~~~~~~~---------~~~~~D~~l~PD~~Tl~~~pw~ 76 (435)
T TIGR03105 7 DKGIKYFLASFVDLHGVQKAKLVPAEAIDHM-ATGGAGFAGFAAWGLGQ---------SPADPDLMAIPDLDSLTQLPWQ 76 (435)
T ss_pred hCCCCEEEEEEECCCCCeeEEEEeHHHHHHH-HcCCCcccchhhhccCC---------CCCCCCEEEEeccccceeCCCC
Confidence 4589999999999999999999999999986 47899988766543110 1245899999999999999999
Q ss_pred CcccceeEEEEcCCCCcCCCChHHHHHHHHHHHHHhcCceEEEeeeeEEEEEeecccCCCC---CCccCCCCCcCcCCcc
Q 003372 485 KQEEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKE---EWVPIDFTPYCSTAAY 561 (825)
Q Consensus 485 ~~~a~v~~~~~~~~g~p~~~~pR~~L~~~~~~~~~~~g~~~~~g~E~EF~l~~~~~~~~~~---~~~p~~~~~~~~~~~~ 561 (825)
+++++|+|+++. +|+|++.|||++|+|++++++ +.|+++++|+|+||||++... ++.. ...+....++|+....
T Consensus 77 ~~~a~v~~d~~~-~G~p~~~~PR~vL~r~~~~~~-~~G~~~~~g~E~EF~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 153 (435)
T TIGR03105 77 PGVAWVAADLHV-NGKPYPQAPRVVLKRQLAEAA-ELGLTLNTGVECEFFLLRRDE-DGSLSIADRADTLAKPCYDQRGL 153 (435)
T ss_pred CCeEEEEEEEee-CCCcCCCCHHHHHHHHHHHHH-hcCCceeEEeceEEEEEecCC-CCCcccCCCCCCCCccCCCCcch
Confidence 999999999976 899999999999999999998 579999999999999998632 1111 1111112345667777
Q ss_pred CCchHHHHHHHHHHHhCCCCeeeeecCCCCCceEEecCcChHHHHHHHHHHHHHHHHHHHHHCCCeEEeccc--------
Q 003372 562 DAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPN-------- 633 (825)
Q Consensus 562 ~~~~~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~r~~i~~iA~~~Gl~AtF~pK-------- 633 (825)
+...+++++|++.|+++||+|+++|+|+|||||||++.|.++|+|||+++++|++||+||++||++||||||
T Consensus 154 ~~~~~~~~~i~~~l~~~gi~ve~~~~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~vk~vA~~~Gl~atFmpKP~~~~~Gs 233 (435)
T TIGR03105 154 MRRYDVLTEISDAMNALGWDPYQNDHEDANGQFEMNFTYADALTTADRHAFFRYMVKEIAEKHGMRATFMPKPFADLTGN 233 (435)
T ss_pred hhhhHHHHHHHHHHHHCCCCeEEeecCcCCCceEEecCcchHHHHHHHHHHHHHHHHHHHHHhCCEEEecCccCCCCCcc
Confidence 788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -------cc-CCCCcccccCCCCCC--CCCcHHHHHHHHHHHHHHHHHHhhhCCCCCCccCCCCC------CcCCccccc
Q 003372 634 -------LW-QNGENVFMASDSSSK--HGMSSVGEKFMAGVLHHLSSILAFTAPVPNSYDRIQPN------TWSGAYQCW 697 (825)
Q Consensus 634 -------l~-~~g~n~f~~~~~~~~--~~ls~~~~~fiaGil~h~~al~a~~~P~~nSY~Rl~~g------~~ap~~~~W 697 (825)
+| ++|+|+|. ++.++ .+||+++++||||||+|++++++|++||+||||||+|+ +|||+++||
T Consensus 234 G~H~H~Sl~d~~g~n~f~--d~~~~~~~~lS~~~~~fiaGlL~h~~~l~a~~~PtvNSYkRl~p~~~~~~~~~AP~~~~W 311 (435)
T TIGR03105 234 GCHFHLSLWDEDGRNLFA--DDSDPNGLGLSKLAYHFIGGILHHAPALCAVLAPTVNSYKRLNAPRTTSGATWAPNFISY 311 (435)
T ss_pred ceEEEEeeecCCCccccc--CCCCCccccccHHHHHHHHHHHHHHHHHHHHHCCCCccccccCCCcCCcCcccCCceeec
Confidence 45 36788887 33333 45999999999999999999999999999999999995 899999999
Q ss_pred ccCCCCCcccccCCCCCCCCCcceEEecCCCCCCChHHHHHHHHHHHHHHHhc-cCCCCCCCCCccccc---CCCCCCCc
Q 003372 698 GKENREAPLRTACPPGVKDGVVSNFELKSFDGCANPHLGLAAIIASGIDGLRR-LCLPEPIDANPASLD---GKLQRLPT 773 (825)
Q Consensus 698 G~~NR~a~iRv~~~~~~~~~~~~~~E~R~~d~~aNPYL~lAailaAgl~Gi~~-l~~~~~~~~~~~~~~---~~~~~LP~ 773 (825)
|.+||+++||||. + +|||+|++|++|||||++||||+||++||++ ++|++|+++|+++.. .+.++||+
T Consensus 312 G~~NR~a~iRv~~--~------~riE~R~~da~aNPYL~lAailaAgl~Gi~~~l~p~~p~~~~~~~~~~~~~~~~~LP~ 383 (435)
T TIGR03105 312 GGNNRTHMVRIPD--P------GRFELRLADGAANPYLAQAAILAAGLDGIERKLDPGPPRDINLYAEELAARGVETLPQ 383 (435)
T ss_pred cCCCCceeEeccC--C------CeeEecCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhhhhcCCcCCCCC
Confidence 9999999999984 1 4999999999999999999999999999999 999999999987311 15678999
Q ss_pred CHHHHHHHHhcCcHHHhhhhHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 003372 774 SLSESVQALEKDDILRDMIGEKLLIAIKGIRKAEINYYSLNKDAYKQ 820 (825)
Q Consensus 774 sl~eAl~~l~~d~~l~~~lG~~~v~~y~~~k~~E~~~~~~~~~~~~~ 820 (825)
||.|||++|++|+.++++||++|+++|+++|++||+.|.+.+++|++
T Consensus 384 sL~eAl~~le~d~~l~~~lG~~~v~~y~~~K~~E~~~~~~~vt~wE~ 430 (435)
T TIGR03105 384 NLLEALRALEADPLLAEALGAEFVDEFLKLKRQEWEEYHRHVSDWEI 430 (435)
T ss_pred CHHHHHHHHhcCHHHHHhhCHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 99999999999999999999999999999999999999999999987
No 3
>PRK09469 glnA glutamine synthetase; Provisional
Probab=100.00 E-value=1.1e-90 Score=787.20 Aligned_cols=403 Identities=24% Similarity=0.357 Sum_probs=354.4
Q ss_pred hhhhccCCceEEEEEEecCCCCceeEEeechhhhhHHhhccccccccccccccccCCCCCCCCCCCCCcEEEEEecCCcE
Q 003372 400 KSDAFESDVSLIRVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTNLSGTGEIRLMPDLSTRW 479 (825)
Q Consensus 400 ~~~~~~~~i~~v~l~~~D~~G~~R~k~vp~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~~~~~~d~~L~PD~sT~~ 479 (825)
.++. +++|++|+++|+|++|++|+|.||+++|.+...++|++|+.+++. +....+.+|++|+||++|++
T Consensus 8 ~~l~-~~~i~~v~~~~~Dl~G~~rgk~ip~~~~~~~~~~~G~~f~~~~~~----------g~~~~~~~D~~l~PD~~Tl~ 76 (469)
T PRK09469 8 TMLN-EHEVKFVDLRFTDTKGKEQHVTIPAHQVNADFFEEGKMFDGSSIG----------GWKGINESDMVLMPDASTAV 76 (469)
T ss_pred HHHH-hCCCCEEEEEEECCCCCEeEEEEEHHHhhHHHhcCCceecccccc----------ccCcCCCCCEEEEEcCCccE
Confidence 3444 468999999999999999999999999985334789888876642 11123678999999999999
Q ss_pred eccCC-CcccceeEEEEcCC-CCcCCCChHHHHHHHHHHHHHhcCc--eEEEeeeeEEEEEeeccc--C-----------
Q 003372 480 RIPWQ-KQEEMIMADMHLKP-GEPWEYCPREALRKVSRLLKEEFNL--VLNAGFEIEFYLLKSVLR--E----------- 542 (825)
Q Consensus 480 ~~p~~-~~~a~v~~~~~~~~-g~p~~~~pR~~L~~~~~~~~~~~g~--~~~~g~E~EF~l~~~~~~--~----------- 542 (825)
++||. +++++|+||+++.+ |+|++.|||++|||++++++ +.|+ ++++|+|+|||||++... .
T Consensus 77 ~~Pw~~~~~a~v~~d~~~~~~g~p~~~~PR~iLkr~~~~l~-~~G~~~~~~~g~ElEF~L~~~~~~~~~~~~~~~~~~~~ 155 (469)
T PRK09469 77 LDPFFEDSTLIIRCDILEPGTMQGYDRDPRSIAKRAEDYLR-STGIADTVLFGPEPEFFLFDDIRFGSSISGSHVAIDDI 155 (469)
T ss_pred ECCcCCCCcEEEEEEEEECCCCCcCCcCHHHHHHHHHHHHH-HcCCCcceeEecceEEEEEeccccccCccccccccccc
Confidence 99995 56899999999985 89999999999999999998 5799 999999999999985220 0
Q ss_pred ------------CCCCCccCCCCCcCcCCccCCchHHHHHHHHHHHhCCCCeeeeecCCC-CCceEEecCcChHHHHHHH
Q 003372 543 ------------GKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAG-KGQFEIALGHTVAAKAADN 609 (825)
Q Consensus 543 ------------~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~~-pGQ~Ei~l~~~~~l~aaD~ 609 (825)
+.....|.+.+.||+..+.+...+++++|++.|+++||+|+++|+|+| ||||||++.|.++|+|||+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~l~~~Gi~v~~~h~E~g~~GQ~Ei~l~~~d~L~aaD~ 235 (469)
T PRK09469 156 EAAWNSGTKYEGGNKGHRPGVKGGYFPVPPVDSSQDIRSAMCLVMEEMGLVVEAHHHEVATAGQNEVATRFNTMTKKADE 235 (469)
T ss_pred hhcccccccccCCCCCCccCCCccccCCCcccchHHHHHHHHHHHHHCCCCcEEeeCCCCCCCeEEEeccCCCHHHHHHH
Confidence 111223444445788888899999999999999999999999999999 5999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCeEEeccc---------------ccCCCCcccccCCCCCCCCCcHHHHHHHHHHHHHHHHHHhh
Q 003372 610 LIFTREVLRAVARKHGLLATFVPN---------------LWQNGENVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAF 674 (825)
Q Consensus 610 ~~~~r~~i~~iA~~~Gl~AtF~pK---------------l~~~g~n~f~~~~~~~~~~ls~~~~~fiaGil~h~~al~a~ 674 (825)
++++|++||+||++||+.|||||| +|++|+|+|.. . ...+||+.+++||||||+|++++++|
T Consensus 236 ~~~~k~~vk~va~~~g~~atFmpKP~~~~~GsG~H~H~Sl~~~g~N~F~~--~-~~~~ls~~~~~fiaGlL~h~~~l~a~ 312 (469)
T PRK09469 236 IQIYKYVVHNVAHAFGKTATFMPKPMFGDNGSGMHCHMSLSKNGVNLFAG--D-KYAGLSEQALYYIGGIIKHAKAINAL 312 (469)
T ss_pred HHHHHHHHHHHHHHhCCEEEEeccccCCCCCceeEEEEeecCCCccccCC--C-CcCCcCHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 67888899973 2 23679999999999999999999999
Q ss_pred hCCCCCCccCCCCCCcCCcccccccCCCCCcccccCCCCCCCCCcceEEecCCCCCCChHHHHHHHHHHHHHHHhc-cCC
Q 003372 675 TAPVPNSYDRIQPNTWSGAYQCWGKENREAPLRTACPPGVKDGVVSNFELKSFDGCANPHLGLAAIIASGIDGLRR-LCL 753 (825)
Q Consensus 675 ~~P~~nSY~Rl~~g~~ap~~~~WG~~NR~a~iRv~~~~~~~~~~~~~~E~R~~d~~aNPYL~lAailaAgl~Gi~~-l~~ 753 (825)
++||+||||||+||+|||++++||.+||+++||||.. +. +..+|||+|++|++|||||++||+|+||++||++ ++|
T Consensus 313 ~~PtvNSYkRl~p~~~ap~~~~WG~~NR~a~iRvp~~-~~--~~~~riE~R~~da~aNPYL~~AaiLaAGldGI~~~l~p 389 (469)
T PRK09469 313 ANPTTNSYKRLVPGYEAPVMLAYSARNRSASIRIPVV-AS--PKARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHP 389 (469)
T ss_pred hcCCCchHhhcCCCCcCcCcceecCCCCcceEEeccC-CC--CCCceEEecCCCCCCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999841 21 2357999999999999999999999999999999 999
Q ss_pred CCCCCCCcccccC----CCCCCCcCHHHHHHHHhcCcH-HHh--hhhHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 003372 754 PEPIDANPASLDG----KLQRLPTSLSESVQALEKDDI-LRD--MIGEKLLIAIKGIRKAEINYYSLNKDAYKQ 820 (825)
Q Consensus 754 ~~~~~~~~~~~~~----~~~~LP~sl~eAl~~l~~d~~-l~~--~lG~~~v~~y~~~k~~E~~~~~~~~~~~~~ 820 (825)
|+|+.+|+++++. ..++||.||.|||++|++|+. +++ +||++|++.|+++||+||++|.+.+++|++
T Consensus 390 ~~p~~~~~y~~~~~~~~~~~~LP~sL~eAL~~le~d~~~~~~~~~lG~~~~~~~~~~Kr~E~~~~~~~vt~wE~ 463 (469)
T PRK09469 390 GEAMDKNLYDLPPEEAAEIPQVAGSLEEALNALDADREFLTAGGVFTDDAIDAYIALRREEVDRVRMTPHPVEF 463 (469)
T ss_pred CCCCCCChhhCChhhhcCcccCCCCHHHHHHHHHhCHHHHhhhccCCHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 9999999986532 456799999999999999965 754 999999999999999999999999999987
No 4
>COG0174 GlnA Glutamine synthetase [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-90 Score=771.80 Aligned_cols=403 Identities=32% Similarity=0.542 Sum_probs=359.1
Q ss_pred hhhhccCCceEEEEEEecCCCCceeEEeechh----hhhHHhhcccccccccc-ccccccCCCCCCCCCCCCCcEEEEEe
Q 003372 400 KSDAFESDVSLIRVIWVDASGQHRCRVVPVKR----FNDIVTKYGVGLTFACM-GMTSAVDGPADGTNLSGTGEIRLMPD 474 (825)
Q Consensus 400 ~~~~~~~~i~~v~l~~~D~~G~~R~k~vp~~~----~~~~~~~~g~~~~~~~~-~~~~~~d~~~~~~~~~~~~d~~L~PD 474 (825)
..++++++|++|+++|+|+.|++|+|++|+++ +.+. .+.|+.|++++. ++.. -+.+|++|+||
T Consensus 7 ~~~~~~~~V~~v~~~f~D~~G~~r~k~ip~~~~~~~~~~~-~~~g~~fdgss~~g~~~-----------i~~sDm~l~Pd 74 (443)
T COG0174 7 LKLLKENGVKFVDLRFTDLNGVLRGKTIPAEKPVSVLAQL-FEGGVVFDGSSIAGFEG-----------IGESDMVLKPD 74 (443)
T ss_pred HHHHHhCCceEEEEEEECCCCCeeeEEEecccchhHHHhh-hccCcCcCCccccccCC-----------CCCCCEEEeec
Confidence 46788999999999999999999999999994 3333 356776665543 2110 14689999999
Q ss_pred cCCcEeccCCCc-ccceeEEEEcCCCCcCCCChHHHHHHHHHHHHHhcCce-EEEeeeeEEEEEeecccCCCCCCccCCC
Q 003372 475 LSTRWRIPWQKQ-EEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLV-LNAGFEIEFYLLKSVLREGKEEWVPIDF 552 (825)
Q Consensus 475 ~sT~~~~p~~~~-~a~v~~~~~~~~g~p~~~~pR~~L~~~~~~~~~~~g~~-~~~g~E~EF~l~~~~~~~~~~~~~p~~~ 552 (825)
++|++++||.++ +|+|+|++++++|+|++.|||++|+|+++++++ .|+. +.+|+|+|||||+.... +.....|.++
T Consensus 75 ~~T~~~~Pw~~~~ta~v~cdv~~~~g~p~~~dPR~vlkr~~~~l~~-~G~~~~~~g~E~EFfLfd~~~~-~~~~~~~~~~ 152 (443)
T COG0174 75 LSTLVVDPWREGPTARVLCDVYDPDGTPYPRDPRSVLKRALARLKD-EGLAPAVVGPELEFFLFDRDGR-DPDGGRPADK 152 (443)
T ss_pred cCceeeCCCCCCCcEEEEEEEECCCCCcCCCChHHHHHHHHHHHHh-cCCccceeecceeEEEeecccC-CcccCccCCC
Confidence 999999999987 899999999999999999999999999999995 6997 59999999999997321 1111467788
Q ss_pred CCcCcCCccCCchHHHHHHHHHHHhCCCCeeeeecCCCCCceEEecCcChHHHHHHHHHHHHHHHHHHHHHCCCeEEecc
Q 003372 553 TPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVP 632 (825)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~r~~i~~iA~~~Gl~AtF~p 632 (825)
++||+..+++...+++++|+..|+++||+||++|||+|||||||++++.++|++||+++++|++||+||++||++|||||
T Consensus 153 ~~yf~~~~~~~~~~~~~di~~~l~~~Gi~ie~~hhEva~gQ~EI~~~~~~~l~~AD~~~~~K~vvk~vA~~hG~~aTFMp 232 (443)
T COG0174 153 GGYFDVAPLDEAEDFRRDIVEALEAAGIEIEAIHHEVAPGQFEINLRFDDALKAADQIVIFKYVVKEVAEKHGLTATFMP 232 (443)
T ss_pred CcccCccccccHHHHHHHHHHHHHHCCCCcEeccccccCCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEeC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c---------------cc-CCCCcccccCCCCCCCCCcHHHHHHHHHHHHHHHHHHhhhCCCCCCccCC-CCCCcCCccc
Q 003372 633 N---------------LW-QNGENVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVPNSYDRI-QPNTWSGAYQ 695 (825)
Q Consensus 633 K---------------l~-~~g~n~f~~~~~~~~~~ls~~~~~fiaGil~h~~al~a~~~P~~nSY~Rl-~~g~~ap~~~ 695 (825)
| +| ++|+|+|+ ++++..++|+.+++||||||+|+++++||+|||+|||||| +|..|||+++
T Consensus 233 KP~~g~~GSGMH~H~Sl~~~dg~nlF~--d~~~~~~lS~~~~~~igGilkha~~~~ai~~PtvNSYkRl~vp~e~AP~~~ 310 (443)
T COG0174 233 KPFFGDNGSGMHVHQSLWDKDGGNLFA--DEDGYAGLSETALHFIGGILKHAPALTAITAPTVNSYKRLGVPYEWAPTYI 310 (443)
T ss_pred CCCCCCCCCceeEEEEEecCCCCcccc--CCCCcccHHHHHHHHHHHHHHHHHHHHhHhCCCcchhhhcCCCcccCcchh
Confidence 9 56 45569998 6666789999999999999999999999999999999999 5547899999
Q ss_pred ccccCCCCCcccccCCCCCCCCCcceEEecCCCCCCChHHHHHHHHHHHHHHHhc-cCCCCCCCCCcccccCCC---CCC
Q 003372 696 CWGKENREAPLRTACPPGVKDGVVSNFELKSFDGCANPHLGLAAIIASGIDGLRR-LCLPEPIDANPASLDGKL---QRL 771 (825)
Q Consensus 696 ~WG~~NR~a~iRv~~~~~~~~~~~~~~E~R~~d~~aNPYL~lAailaAgl~Gi~~-l~~~~~~~~~~~~~~~~~---~~L 771 (825)
+||.+|||++||||.. ..++..+|+|+|+||++|||||++||+|+||++||++ ++|++|+++|.|+++... +.|
T Consensus 311 ~wg~~NRsa~iRIP~~--~~~~~~~RiE~R~pd~~aNPYLa~AaiL~Agl~GI~~ki~p~~p~~~n~y~~~~~e~~~~~L 388 (443)
T COG0174 311 AWGVRNRSASVRIPAS--GANGKARRVEFRVPDPDANPYLAFAAILAAGLDGIENKLEPGEPVDGNLYELSPEERKEPTL 388 (443)
T ss_pred cccccCcceEEEeCCC--CCCCCcceeEeeCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcccccccccCChhhhccccC
Confidence 9999999999999983 2223457999999999999999999999999999999 999999999999876522 469
Q ss_pred CcCHHHHHHHHhcCcHHHhhhhHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 003372 772 PTSLSESVQALEKDDILRDMIGEKLLIAIKGIRKAEINYYSLNKDAYKQ 820 (825)
Q Consensus 772 P~sl~eAl~~l~~d~~l~~~lG~~~v~~y~~~k~~E~~~~~~~~~~~~~ 820 (825)
|.||.|||++|+.+++++++||+++++.|+++|+.||+.|...+++|+.
T Consensus 389 P~sL~eAl~~l~~~~~~~~~lge~~~~~yi~~K~~E~~~~~~~v~~wE~ 437 (443)
T COG0174 389 PASLREALDALEDSEFLREALGEDFIDAYIALKRAEWEEFRSRVTPWEF 437 (443)
T ss_pred cccHHHHHHHhhhchHHHHhcChHHHHHHHHHHHHHHHHHHccCCHHHH
Confidence 9999999999998888999999999999999999999999999999975
No 5
>PLN02284 glutamine synthetase
Probab=100.00 E-value=6.6e-65 Score=558.79 Aligned_cols=317 Identities=20% Similarity=0.219 Sum_probs=266.8
Q ss_pred ceEE--EEEEecCCCCceeEEeechhhhhHHhhccccccccccccccccCCCCCCCCCCCCCcEEEEEecCCcEeccCCC
Q 003372 408 VSLI--RVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTNLSGTGEIRLMPDLSTRWRIPWQK 485 (825)
Q Consensus 408 i~~v--~l~~~D~~G~~R~k~vp~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~~~~~~d~~L~PD~sT~~~~p~~~ 485 (825)
++|| +++|+|+.|..|...+|.+.+.+. .|++|++++.++. -.+.+|++|+|| |++++||.+
T Consensus 21 ~~y~wi~~~~~dl~g~~~~~~~~~~~~~~~---~~~~fdGssi~~~-----------~~~~sD~~l~PD--t~~~~Pw~~ 84 (354)
T PLN02284 21 AEYIWIGGSGMDLRSKARTLPGPVTDPSKL---PKWNYDGSSTGQA-----------PGEDSEVILYPQ--AIFKDPFRG 84 (354)
T ss_pred EEEEEEEEEecCCCCceEEecccccccccC---CceeecCCCCCCc-----------cCCCceEEEEcc--EEEECCCCC
Confidence 4555 678899999999999999988763 7899988776431 125689999999 999999975
Q ss_pred -cccceeEEEEcCCCCcCCCChHHHHHHHHHHHHHhcCceEEEeeeeEEEEEeeccc--CCCC-CCccCCCCCcCcCCcc
Q 003372 486 -QEEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLR--EGKE-EWVPIDFTPYCSTAAY 561 (825)
Q Consensus 486 -~~a~v~~~~~~~~g~p~~~~pR~~L~~~~~~~~~~~g~~~~~g~E~EF~l~~~~~~--~~~~-~~~p~~~~~~~~~~~~ 561 (825)
++++|+||+++.||+|++.|||.+|+|+++++++ .|+++++|+|+|||||+.... .|.+ ...|.++++||+..+.
T Consensus 85 ~~~~~vlcdv~~~dG~p~~~dPR~vL~r~~~~~~~-~g~~~~~G~E~EF~lf~~~~~~~~g~~~~~~~~~~~~y~~~~~~ 163 (354)
T PLN02284 85 GNNILVMCDAYTPAGEPIPTNKRAKAAKIFSHPDV-AAEEPWYGIEQEYTLLQKDVKWPLGWPVGGYPGPQGPYYCGVGA 163 (354)
T ss_pred CCeEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHh-cCCceeEEeceEEEEEecCCcccCCCCCCCcccCCCCcccCcch
Confidence 5799999999999999999999999999999985 799999999999999985221 1111 1245566777766553
Q ss_pred --CCchHHHHHHHHHHHhCCCCeeeeecCCCCCceEEecCcChHHHHHHHHHHHHHHHHHHHHHCCCeEEecccccC---
Q 003372 562 --DAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPNLWQ--- 636 (825)
Q Consensus 562 --~~~~~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~r~~i~~iA~~~Gl~AtF~pKl~~--- 636 (825)
....++++++++.|+++||+|+++|+|+|||||||++.|.++|+|||+++++|++||+||++||+.||||||+..
T Consensus 164 ~~~~~~~~~~~l~~~l~~~Gi~ve~~h~E~apGQ~Ei~l~~~d~l~aAD~~~~~K~vvk~vA~~~Gl~ATFMPKP~~~~~ 243 (354)
T PLN02284 164 DKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPVVGISAGDQLWVARYILERITEIAGVVVSFDPKPIPGDW 243 (354)
T ss_pred hhHHHHHHHHHHHHHHHHCCCCeEEEEcCcCCCceEEEecCCcHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCCCCCCC
Confidence 334789999999999999999999999999999999999999999999999999999999999999999999742
Q ss_pred --CCCcccccCCCCCCCCCcHHHHHHHHHH-HHHHHHHHhhhCCCCCCccCCCCCCcCCc--ccccccCCCCCcccccCC
Q 003372 637 --NGENVFMASDSSSKHGMSSVGEKFMAGV-LHHLSSILAFTAPVPNSYDRIQPNTWSGA--YQCWGKENREAPLRTACP 711 (825)
Q Consensus 637 --~g~n~f~~~~~~~~~~ls~~~~~fiaGi-l~h~~al~a~~~P~~nSY~Rl~~g~~ap~--~~~WG~~NR~a~iRv~~~ 711 (825)
+|.|+|+|.-.....+-+...+++++|+ |+|+++++||++ ||||||+||+|||. +++||.+||+++||||..
T Consensus 244 ~GSGmH~H~SL~~~~~~gg~~~~~~~l~~~~l~h~~~l~a~~~---NSYkRL~p~~eap~~~~~~wg~~NRsa~iRIP~~ 320 (354)
T PLN02284 244 NGAGAHTNYSTKSMREDGGYEVIKKAIEKLGLRHKEHIAAYGE---GNERRLTGKHETADINTFSWGVANRGASIRVGRD 320 (354)
T ss_pred ccCcceeecChhhcccCCcHHHHHHHHHHHHHHHHHHhhhhhc---CcHhhcCCCccCcccccceeecCCCceeEEECCC
Confidence 4678888764311112345668999999 999999999996 99999999999995 899999999999999963
Q ss_pred CCCCCCCcceEEecCCCCCCChHHHHHHHHHHHHH
Q 003372 712 PGVKDGVVSNFELKSFDGCANPHLGLAAIIASGID 746 (825)
Q Consensus 712 ~~~~~~~~~~~E~R~~d~~aNPYL~lAailaAgl~ 746 (825)
.+ ....+|||+|++|++|||||++|+||++.+.
T Consensus 321 ~~--~~~~~riE~R~pd~~aNPYLa~aaila~~~~ 353 (354)
T PLN02284 321 TE--KEGKGYFEDRRPASNMDPYVVTSMIAETTIL 353 (354)
T ss_pred CC--CCCCCEEEEcCCCCCCCHHHHHHHHHHHHhc
Confidence 21 1234699999999999999999999999874
No 6
>PLN03036 glutamine synthetase; Provisional
Probab=100.00 E-value=1.8e-60 Score=529.28 Aligned_cols=317 Identities=19% Similarity=0.248 Sum_probs=259.8
Q ss_pred EEEEEEecCCC-CceeEEeechhhhhHHh-hccccccccccccccccCCCCCCCCCCCCCcEEEEEecCCcEeccCCC-c
Q 003372 410 LIRVIWVDASG-QHRCRVVPVKRFNDIVT-KYGVGLTFACMGMTSAVDGPADGTNLSGTGEIRLMPDLSTRWRIPWQK-Q 486 (825)
Q Consensus 410 ~v~l~~~D~~G-~~R~k~vp~~~~~~~~~-~~g~~~~~~~~~~~~~~d~~~~~~~~~~~~d~~L~PD~sT~~~~p~~~-~ 486 (825)
.+.+.|+|.+| -+|||+-.+..-.+.+. ..|++|++++.++. -.+.+|++|+|| |++++||.+ +
T Consensus 80 ~~~yiw~~g~~~dlrgk~r~~~~~~~~~~~~~~w~fDGSs~g~a-----------~~~~sD~~l~PD--Tl~~~Pw~~~~ 146 (432)
T PLN03036 80 IAEYIWIGGSGIDLRSKSRTISKPVEHPSELPKWNYDGSSTGQA-----------PGEDSEVILYPQ--AIFKDPFRGGN 146 (432)
T ss_pred EEEEEEeCCCCCCCCCCeEEeCccccccccCCceeeecCccCCC-----------cCCCCCEEEEcc--EEEECCcCCCC
Confidence 56778889999 58888654432222111 15888887776421 135789999999 999999965 5
Q ss_pred ccceeEEEEcCCCCcCCCChHHHHHHHHHHHHHhcCceEEEeeeeEEEEEeeccc--CCCC-CCccCCCCCcCcCCccCC
Q 003372 487 EEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLR--EGKE-EWVPIDFTPYCSTAAYDA 563 (825)
Q Consensus 487 ~a~v~~~~~~~~g~p~~~~pR~~L~~~~~~~~~~~g~~~~~g~E~EF~l~~~~~~--~~~~-~~~p~~~~~~~~~~~~~~ 563 (825)
+++|+||+++.||+|++.|||.+|++++++++. .|+++++|+|+|||||+.... .|++ ...|.++++||++.+.+.
T Consensus 147 ~a~Vlcd~y~~dG~P~~~dpR~~L~~vl~~~~~-~g~~p~~G~E~EF~Lf~~~~~~~~G~~~~~~p~p~g~yy~~~~~d~ 225 (432)
T PLN03036 147 NILVICDTYTPAGEPIPTNKRHRAAEIFSNKKV-VDEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADK 225 (432)
T ss_pred eEEEEEEEECCCCCCCCCCHHHHHHHHHHHhcc-cCCeEEEEeeeEEEEEEcccccccCCCCCCccCCCCCcCCCchhhh
Confidence 799999999999999999999999999999874 599999999999999985211 1222 234556777887766554
Q ss_pred --chHHHHHHHHHHHhCCCCeeeeecCCCCCceEEecCcChHHHHHHHHHHHHHHHHHHHHHCCCeEEecccccC-----
Q 003372 564 --VSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPNLWQ----- 636 (825)
Q Consensus 564 --~~~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~r~~i~~iA~~~Gl~AtF~pKl~~----- 636 (825)
..+++++++++|+.+||+|+++|+|+|||||||++.|+++|+|||+++++|++||+||++||+.||||||+..
T Consensus 226 ~~~~~i~~~i~~a~~~~GI~Ie~~~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk~VA~~~Gl~ATFMPKP~~gd~~G 305 (432)
T PLN03036 226 SFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPIEGDWNG 305 (432)
T ss_pred hhHHHHHHHHHHHHHHCCCCeEEEEcCcCCCceEEecCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCcCCCCcCC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999732
Q ss_pred CCCcccccCCCCCCCCCcHHHHHHHHH-HHHHHHHHHhhhCCCCCCccCCCCCCcCC--cccccccCCCCCcccccCCCC
Q 003372 637 NGENVFMASDSSSKHGMSSVGEKFMAG-VLHHLSSILAFTAPVPNSYDRIQPNTWSG--AYQCWGKENREAPLRTACPPG 713 (825)
Q Consensus 637 ~g~n~f~~~~~~~~~~ls~~~~~fiaG-il~h~~al~a~~~P~~nSY~Rl~~g~~ap--~~~~WG~~NR~a~iRv~~~~~ 713 (825)
+|.|+|+|.-.....+.-...+++++| +++|+++++|+++ ||||||++++||| .+++||.+||+++||||...
T Consensus 306 SGmHiH~Sl~d~r~~gg~~~~~~~i~gl~l~H~~~i~A~~~---NsykRL~~~~ea~~p~~~swG~~NR~asIRIP~~~- 381 (432)
T PLN03036 306 AGCHTNYSTKSMREEGGFEVIKKAILNLSLRHKEHISAYGE---GNERRLTGKHETASIDTFSWGVANRGCSIRVGRDT- 381 (432)
T ss_pred CCceeEechhhccccchHHHHHHHHhhHHHHHHHHHHhhhc---ChhhccCCCccccCCccceEeccCCcceEEECCCC-
Confidence 467888876431111123455788888 9999999999998 9999999999995 59999999999999999732
Q ss_pred CCCCCcceEEecCCCCCCChHHHHHHHHHHHH
Q 003372 714 VKDGVVSNFELKSFDGCANPHLGLAAIIASGI 745 (825)
Q Consensus 714 ~~~~~~~~~E~R~~d~~aNPYL~lAailaAgl 745 (825)
...+.+|||+|.||++|||||++|+|+...+
T Consensus 382 -~~~~~~riE~R~pda~aNPYLv~aai~~t~~ 412 (432)
T PLN03036 382 -EKKGKGYLEDRRPASNMDPYIVTSLLAETTI 412 (432)
T ss_pred -CCCcccEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence 1222569999999999999999999999886
No 7
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) have been found in Bacteroides fragilis. in Butyrivibrio fibrisolvens. It is a hexamer of identical chains and in some protozoa. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006807 nitrogen compound metabolic process; PDB: 2J9I_E 3ZXV_D 1HTQ_D 1HTO_F 2BVC_F 2WGS_G 3ZXR_B 2WHI_D 3NG0_A 1LGR_C ....
Probab=100.00 E-value=3.3e-61 Score=512.16 Aligned_cols=236 Identities=42% Similarity=0.722 Sum_probs=205.8
Q ss_pred CCChHHHHHHHHHHHHHhcCceEEEeeeeEEEEEeecccCCCC--CCcc----CCCCCcCcCCccCCchHHHHHHHHHHH
Q 003372 503 EYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKE--EWVP----IDFTPYCSTAAYDAVSPVFQEVLADLH 576 (825)
Q Consensus 503 ~~~pR~~L~~~~~~~~~~~g~~~~~g~E~EF~l~~~~~~~~~~--~~~p----~~~~~~~~~~~~~~~~~~~~~i~~~l~ 576 (825)
+.|||.+|||+++++++ .|+++++|+|+||||+++....+.+ ...+ ....++|+....+...+++++|++.|+
T Consensus 1 ~~~PR~~Lkr~~~~~~~-~g~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 79 (259)
T PF00120_consen 1 EACPRSILKRVLERLEE-MGLSFKVGFELEFYLFDRDDDGGWPRPSGYPDEPGQDYGGYYSLSPLDAGEDFLEEIVDALE 79 (259)
T ss_dssp -T-HHHHHHHHHHHHHH-TCCEEEEEEEEEEEEESTCEETTSSSTTSEESESSSTTTBSSTTTTTSTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH-hCCceEEEEeEEEEEeccCcccccccccccccccccccCCcCCCchhhHHHHHHHHHHHHHH
Confidence 47999999999999985 7999999999999999974332222 1112 134577787788899999999999999
Q ss_pred hCCCCeeeeecCCCCCceEEecCcChHHHHHHHHHHHHHHHHHHHHHCCCeEEeccc---------------ccC--CCC
Q 003372 577 SLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPN---------------LWQ--NGE 639 (825)
Q Consensus 577 ~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~r~~i~~iA~~~Gl~AtF~pK---------------l~~--~g~ 639 (825)
++||+|+++|+|+|||||||++.|.++++|||+++++|++||+||++||++|||||| +|+ +|+
T Consensus 80 ~~Gi~ve~~h~E~gpgQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~atFmpKP~~~~~GsG~H~h~Sl~~~~~g~ 159 (259)
T PF00120_consen 80 QAGIPVEQIHHEVGPGQYEINLGPCDPLEAADNLVLFKEIIKEVARKHGLTATFMPKPFSGDNGSGMHLHISLWDAKDGK 159 (259)
T ss_dssp HCT--EEEEEEESSTTEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEEE-SSSSSTTSS--BEEEEEEECHHHTTE
T ss_pred HhhccccccccccchHhhccccccCcHHHHHHHHHHHHHHHHHHHHHcCCceeeeccccCCcCccchhhhhhhhhccccc
Confidence 999999999999999999999999999999999999999999999999999999999 564 788
Q ss_pred cccccCCCCCCCCCcHHHHHHHHHHHHHHHHHHhhhCCCCCCccCCCCCCcCCcccccccCCCCCcccccCCCCCCCCCc
Q 003372 640 NVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVPNSYDRIQPNTWSGAYQCWGKENREAPLRTACPPGVKDGVV 719 (825)
Q Consensus 640 n~f~~~~~~~~~~ls~~~~~fiaGil~h~~al~a~~~P~~nSY~Rl~~g~~ap~~~~WG~~NR~a~iRv~~~~~~~~~~~ 719 (825)
|+|. +++++.+||+.+++|+||||+|++++++|++||+||||||+|++|||.+++||.+||+++||||.. ..+..
T Consensus 160 n~f~--~~~~~~~ls~~~~~flaGll~h~~~l~a~~~pt~nsykRl~~~~~ap~~~~wG~~NR~a~iRi~~~---~~~~~ 234 (259)
T PF00120_consen 160 NLFY--DPDGPAGLSELARHFLAGLLKHAPALTAFTAPTVNSYKRLVPGSWAPTYISWGYDNRSAAIRIPSG---GGPKG 234 (259)
T ss_dssp ETTB--STTSHGHHHHHHHHHHHHHHCHHHHHHHCHSTSTTHHHHSSSTSSSSSBEEEEESHTTSSEEE-HH---HHHGG
T ss_pred cccc--cccccccccHHHHHHHHHHHHHHHHHHhhhCccCcchhhCCCCccceeccchhhcccchhhheecc---ccccc
Confidence 9998 555556899999999999999999999999999999999999999999999999999999999973 11345
Q ss_pred ceEEecCCCCCCChHHHHHHHHHHH
Q 003372 720 SNFELKSFDGCANPHLGLAAIIASG 744 (825)
Q Consensus 720 ~~~E~R~~d~~aNPYL~lAailaAg 744 (825)
+|||+|++|++|||||++||||+||
T Consensus 235 ~~~E~R~~da~aNPYL~laailaAG 259 (259)
T PF00120_consen 235 TRIENRLPDADANPYLALAAILAAG 259 (259)
T ss_dssp SEEEEESSBTTSSHHHHHHHHHHHH
T ss_pred cEEeccCCCCCcCHHHHHHHHHhcC
Confidence 7999999999999999999999998
No 8
>PRK02925 glucuronate isomerase; Reviewed
Probab=100.00 E-value=4.6e-52 Score=456.47 Aligned_cols=361 Identities=16% Similarity=0.185 Sum_probs=305.4
Q ss_pred HHHHHhccCCcccccCCCcc---cC--------------C---------CCcchhhccccccCC--------CccCCCcc
Q 003372 5 ELREVVENIELVDGHAHNIV---SL--------------D---------SSFPFIQSFSEATGP--------ALSYAPYS 50 (825)
Q Consensus 5 ~l~~~i~~~p~iD~H~H~~~---~~--------------~---------~~~~~~~~~~ea~~~--------~~~~~~~~ 50 (825)
+|++..+++||||-|||--- .+ | .+.|.+.|+.+|++- .+....++
T Consensus 18 ~LY~~a~~lPIiDyH~Hl~p~~iaen~~F~n~telwl~gDHYkwR~Mra~GV~e~~ITg~as~~ekf~~~a~t~p~~~Gn 97 (466)
T PRK02925 18 RLYHDAKDLPIIDYHCHLDPKEIAENKPFKNITELWLKGDHYKWRAMRSNGVDEELITGDASDREKFRAWAKTVPLFIGN 97 (466)
T ss_pred HHHHHHhcCceeCCCCCCCHHHHhccCCCCCHHHHhccCccHHHHHHHHcCCCHHHccCCCCHHHHHHHHHHhhhhhcCC
Confidence 58877999999999999732 11 1 234677777666641 12356788
Q ss_pred hhhhhHHHHHHhhhCCCC-----CHHHHHHHHH-Hc-CcccHHHHHHhhCCcEEEEEecCCCCCCCCChHHHHhhcc---
Q 003372 51 LSFKRNLKNIAELYGCDS-----SLQAVEEYRR-AA-GLQSICSICFEAANISAVLIDDGLKLDKKHGLDWHKSLVP--- 120 (825)
Q Consensus 51 ~~~~~~~~~l~~~fg~~~-----~~~~i~~~~~-~l-~~~~~~r~ll~~~~v~~~~~d~g~~~d~~~~~~~h~~~~~--- 120 (825)
..|.|..+||++||||++ ||++||++++ .| ++++++|.|++++||++||| ||||+|+|+||++++.
T Consensus 98 PlyhW~hlELkr~FGi~~~l~~~nA~~Iwd~~n~~L~~p~f~~r~Ll~~~nVe~icT----TDDP~DdL~~H~~l~~d~~ 173 (466)
T PRK02925 98 PLYHWTHLELRRVFGITELLSPETADEIWDEINELLATPEFRPRALIERFNVEVICT----TDDPLDDLEYHKAIAEDGS 173 (466)
T ss_pred HHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHHHHCCCCCCHHHHHHHCCceEEEe----cCCCCccHHHHHHHHhcCC
Confidence 899999999999999996 9999999998 56 57799999999999999999 9999999999998874
Q ss_pred ---------CCCeEEeccchHH-HHHHhhCC-CC-CcccHHHHHHHHHHHHHhhcccccceeeeeec--ccCCCCCCC--
Q 003372 121 ---------FVGRILRIERLAE-EILDQASP-DG-SIWTLDVFIETFLKQLRSAANKIVGLKSIAAY--RSGLEINPH-- 184 (825)
Q Consensus 121 ---------~~~~i~rie~~~~-~~~~~~~~-~~-~~~~~~~~~~al~~~l~~~~~~~vgfks~~ay--~~Gl~~~~~-- 184 (825)
|||+++.|++..+ +++++|++ +| +|.+|++|++||++|+++ |++.||. ||||+..++
T Consensus 174 f~~~VlPtfRPD~a~~i~~~~f~~~~~kL~~~~g~~i~~~~~ll~AL~~R~~~-------F~~~Gc~~sDHgl~~~~~~~ 246 (466)
T PRK02925 174 FDGRVLPTFRPDKAFNIEHEGFADYVEKLGEVTGTDITTFDGLLEALRKRRDY-------FAAHGCRSSDHGLDTVVTAE 246 (466)
T ss_pred CCceEecCcCCccccCCCchhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH-------HHHcCCEEhhcCCCccCCCC
Confidence 3799999999877 79999887 45 899999999999999999 7777774 999986555
Q ss_pred CCHHHHHHHHHHHHhCCCCCcCCchhhhhHHHHHHHHHHhhCCCcEEEeeCC------------C-CCCCCCCC----CC
Q 003372 185 VTKKDAEEGLAEDLRSGKPVRITNKSLIDYIFISSLEVAQFLDLPLQIHTGF------------G-DKDLDLRL----SN 247 (825)
Q Consensus 185 ~~~~ea~~~~~r~l~~~~~~~~~~~~l~d~~l~~l~e~~~e~glpvq~H~G~------------g-d~~~~~~~----~~ 247 (825)
++.++++++|+++++++.....+...+..++++.+.++++|.||+||+|+|. | |.|.|... +.
T Consensus 247 ~~~~e~~~if~k~~~g~~lt~~E~~~f~~~~l~~la~~y~e~gwvmQlH~Ga~Rn~n~~~~~~lG~DtG~Dsi~d~~~a~ 326 (466)
T PRK02925 247 LSEAEADAIFAKALAGGTLTEEEIAQFRTAMLTELARMYAEDGWVMQLHIGALRNNNTRMFKKLGPDTGFDSIGDTPIAE 326 (466)
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHCCCeEEeecccccCCCHHHHHHhCCCCCcCCCCchhHHH
Confidence 6899999999999986433344456677779999999999999999999998 4 55665433 33
Q ss_pred hh--chHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCe------eeeccccccCcccHHHHHHHHHHHHHHCCCCc
Q 003372 248 PL--HLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQ------VYLDFGLAIPKLSVQGMISSIKELLELAPTKK 319 (825)
Q Consensus 248 P~--~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pN------Vyld~s~~~~~~~~~g~~~~l~~~le~~~~~k 319 (825)
++ +|+.+-+.+++|+++++.+++.+ ..+.+.++++||+ ||++.+|||+++ ++||.+++..+.+.+++++
T Consensus 327 ~L~~lL~~l~~~~~LpktIly~Lnp~~--n~~lat~~g~F~~~~~~gkvq~Ga~WWFnD~-~~GM~~ql~~la~~glls~ 403 (466)
T PRK02925 327 ALSPLLDALGNENDLPKTILYTLNPTD--NEELATMAGNFQGLGIPGKMQFGAGWWFNDQ-KDGMERQMEQLAETGLLSN 403 (466)
T ss_pred HHHHHHHhcccCCCCCeEEEEecCccc--HHHHHHHHcccCCCCCCCccccccchhhccC-HHHHHHHHHHHHhccchhh
Confidence 43 57777777899999999999976 3478999999965 599999999986 9999999999999999999
Q ss_pred EE-EecCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCChHH--HHHHHHHHHHHhHHHHhcCC
Q 003372 320 VM-FSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGE--AIEVAKDIFALNAAQFYKIN 381 (825)
Q Consensus 320 il-fgSD~~~~P~~~~~~~~~~r~~l~~~l~~~v~~g~l~~~~--a~~~~~~Il~~NA~rly~L~ 381 (825)
++ |.||||+|. +|++|++|||+||++|++||++|++|.++ +.+++++|||+||+++|++.
T Consensus 404 fvGmltDSRsfl--Sy~RHeyFRRilc~~lg~~Ve~G~~P~d~~~l~~iv~dI~y~Na~~yF~~~ 466 (466)
T PRK02925 404 FVGMLTDSRSFL--SYARHEYFRRILCNFLGRWVEEGELPADEELLGEMVKDICYNNAKRYFKLE 466 (466)
T ss_pred cccccccHHHHH--hhhHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhHHHhcCCC
Confidence 99 999999998 57999999999999999999999998555 78999999999999999863
No 9
>COG1904 UxaC Glucuronate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8e-49 Score=417.58 Aligned_cols=359 Identities=18% Similarity=0.212 Sum_probs=302.0
Q ss_pred HHHHHhccCCcccccCCCccc-----------------CC---------CCcchhhccccccCC----C----ccCCCcc
Q 003372 5 ELREVVENIELVDGHAHNIVS-----------------LD---------SSFPFIQSFSEATGP----A----LSYAPYS 50 (825)
Q Consensus 5 ~l~~~i~~~p~iD~H~H~~~~-----------------~~---------~~~~~~~~~~ea~~~----~----~~~~~~~ 50 (825)
.|...+.++||||.|||--=. +| .+.+-+.++.++++. + .....++
T Consensus 17 ~l~~~vkdlPIidpH~Hl~P~~i~en~~F~d~t~l~l~~DHY~wRmmrs~GV~e~~itgd~sdrEkw~afa~~~~~~~Gn 96 (463)
T COG1904 17 RLHAYVKDLPIIDPHCHLEPQEIAENEAFPDPTSLWLKGDHYKWRMMRSNGVAERLITGDTSDREKWRAFAKTVPLFIGN 96 (463)
T ss_pred HHHHhhcCCCeeCCcCCCCHHHHhhcCCCCCHHHHhhcccHHHHHHHHHcCCchhhcCCCCChHHHHHHHHHhhhhhcCC
Confidence 567889999999999995321 11 122333444444331 1 1245678
Q ss_pred hhhhhHHHHHHhhhCCCC-----CHHHHHHHHHH-c-CcccHHHHHHhhCCcEEEEEecCCCCCCCCChHHHHhhcc---
Q 003372 51 LSFKRNLKNIAELYGCDS-----SLQAVEEYRRA-A-GLQSICSICFEAANISAVLIDDGLKLDKKHGLDWHKSLVP--- 120 (825)
Q Consensus 51 ~~~~~~~~~l~~~fg~~~-----~~~~i~~~~~~-l-~~~~~~r~ll~~~~v~~~~~d~g~~~d~~~~~~~h~~~~~--- 120 (825)
..|.|..++|+++|||++ |+++||+++++ | ++++++|.|++++||++||| ||||+|+|+||+++++
T Consensus 97 P~y~W~hlel~r~FgI~e~ls~~tad~iwd~~n~~La~~~frpRaL~~~~NVevv~T----TDdP~dsL~~H~~l~~d~~ 172 (463)
T COG1904 97 PLYHWTHLELERVFGITELLSEETADEIWDEINDLLAQPDFRPRALIEQFNVEVVCT----TDDPIDSLEYHKELAEDGF 172 (463)
T ss_pred cchhhhHHHHhhhcCcccccCcccHHHHHHHHHHHhCCCCCCHHHHHHHcCeeEEec----CCCCcccHHHHHHHHhcCC
Confidence 889999999999999997 99999999985 4 56799999999999999999 9999999999999987
Q ss_pred --------CCCeEEeccchHH-HHHHhhCC-CC-CcccHHHHHHHHHHHHHhhcccccceeeeeec--ccCCCCCCC--C
Q 003372 121 --------FVGRILRIERLAE-EILDQASP-DG-SIWTLDVFIETFLKQLRSAANKIVGLKSIAAY--RSGLEINPH--V 185 (825)
Q Consensus 121 --------~~~~i~rie~~~~-~~~~~~~~-~~-~~~~~~~~~~al~~~l~~~~~~~vgfks~~ay--~~Gl~~~~~--~ 185 (825)
|||+++.||...+ +++++++. +| ++.+|++|++|+++|+++ |++.||. ||||+..++ .
T Consensus 173 ~~~VlPa~RPD~~~~i~~~gf~~~~~kL~~~ag~~~~~~~~~l~Al~~R~~~-------F~~~G~~sSDH~l~t~~~a~~ 245 (463)
T COG1904 173 HGRVLPAWRPDAAVDIERAGFADYVEKLGEVAGTDISTWDGYLDALRKRREY-------FKSHGATSSDHGLDTADTAEL 245 (463)
T ss_pred CceeccCcCCccccCCCccchHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH-------HHHcCCcccccCCCccccccC
Confidence 4799999999877 89999887 44 889999999999999998 8999995 999988766 7
Q ss_pred CHHHHHHHHHHHHhCCCCCcCCchhhhhHHHHHHHHHHhhCCCcEEEeeCC------------C-CCCCCCC----CCCh
Q 003372 186 TKKDAEEGLAEDLRSGKPVRITNKSLIDYIFISSLEVAQFLDLPLQIHTGF------------G-DKDLDLR----LSNP 248 (825)
Q Consensus 186 ~~~ea~~~~~r~l~~~~~~~~~~~~l~d~~l~~l~e~~~e~glpvq~H~G~------------g-d~~~~~~----~~~P 248 (825)
+.++|.++|.|.+++......+...+...++..+.+++++.||+||+|+|. | |.|+|.+ ++++
T Consensus 246 ~~~~a~~if~k~l~G~~lt~~E~~~f~a~~l~~l~km~~~~gwVmQiH~ga~RN~n~~~~~k~G~D~GfDi~~~~~~a~~ 325 (463)
T COG1904 246 SEADADAIFDKRLAGEALSTEEAEQFKAAMLTELAKMSAEDGWVMQIHPGALRNHNPRMFKKLGPDTGFDIPNDTEIAEG 325 (463)
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhhhcCeeEEecccccccCCHHHHHHhCCCCCCCCCCcchhHHH
Confidence 899999999999997443444455566779999999999999999999998 4 5666544 4555
Q ss_pred h--chHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHH------hCCeeeeccccccCcccHHHHHHHHHHHHHHCCCCcE
Q 003372 249 L--HLRAILEDKRFSKCRFVLLHASYPFSKEASYLAY------VYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKV 320 (825)
Q Consensus 249 ~--~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~------~~pNVyld~s~~~~~~~~~g~~~~l~~~le~~~~~ki 320 (825)
+ +|+.+-.+++.|++.++++++.+ ..+.+.|++ .+|+++++++|||++. ++||.+++..+.+++++.++
T Consensus 326 L~~LLd~~~~~~~L~k~ily~lnp~~--~~~latm~g~fq~~~~~~~~q~G~~WWFnD~-~dGM~r~~e~la~~gl~~nf 402 (463)
T COG1904 326 LKPLLDAFGEDNDLPKTILYLLNPND--NEVLATMAGNFQGEGVSPKLQFGPAWWFNDS-KDGMERQREQLASLGLLSNF 402 (463)
T ss_pred HHHHHHhhcccCCCceEEEEecCCch--hHHHHHHHhhccccccCcccccCcchhhcCC-hHHHHHHHHHHHHHHHHHhh
Confidence 5 67767777899999999999986 456799998 7799999999999985 89999999999999999999
Q ss_pred E-EecCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCChHHHH--HHHHHHHHHhHHHHhc
Q 003372 321 M-FSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAI--EVAKDIFALNAAQFYK 379 (825)
Q Consensus 321 l-fgSD~~~~P~~~~~~~~~~r~~l~~~l~~~v~~g~l~~~~a~--~~~~~Il~~NA~rly~ 379 (825)
+ |.||+|+|+ +|++|++|||++|+++++||++|+++.+++. .+..+|+|+|++.+|.
T Consensus 403 vGmltDsRsfl--Sy~Rhe~fRRilC~~igr~veeg~~p~dea~~~~~~~~i~y~n~~~~f~ 462 (463)
T COG1904 403 VGMLTDSRSFL--SYTRHEYFRRILCALIGRWVEEGEIPRDEALLGVIVKNICYNNAVDYFA 462 (463)
T ss_pred hcccccchhhh--cccHHHHHHHHHHHHHHHHHHcCCCCcchHHhhhhhhhcccccHHHHhc
Confidence 9 999999999 5889999999999999999999999998853 6777899999999985
No 10
>PF02614 UxaC: Glucuronate isomerase; InterPro: IPR003766 Uronate isomerase (also known as glucuronate isomerase) catalyses the reaction D-glucuronate to D-fructuronate and also converts D-galacturonate to D-tagaturonate [].; GO: 0008880 glucuronate isomerase activity, 0006064 glucuronate catabolic process; PDB: 2QEE_B 3HKA_A 3HK8_A 2PNK_H 2Q6E_A 3HK7_A 3HK5_B 3HK9_A 2Q08_L 1J5S_B ....
Probab=100.00 E-value=5.4e-46 Score=416.67 Aligned_cols=359 Identities=16% Similarity=0.179 Sum_probs=267.0
Q ss_pred hHHHHH-hccCCcccccCCCcccC---C-----------------------CCcchhhccccccCCC--------ccCCC
Q 003372 4 EELREV-VENIELVDGHAHNIVSL---D-----------------------SSFPFIQSFSEATGPA--------LSYAP 48 (825)
Q Consensus 4 ~~l~~~-i~~~p~iD~H~H~~~~~---~-----------------------~~~~~~~~~~ea~~~~--------~~~~~ 48 (825)
.+|++- ++++||||-|||-.-.. + .+.|.+-+++++.... +....
T Consensus 16 ~~Ly~~~a~~lPIiD~H~HL~p~~i~en~~f~~i~elwl~~DHYkwR~mra~Gv~E~~itg~a~~~ekF~a~a~~~~~~~ 95 (462)
T PF02614_consen 16 RRLYHEYAKDLPIIDYHCHLDPKEIAENRLFGNITELWLYGDHYKWRAMRANGVPEEFITGDASPREKFRAWAETVPRFI 95 (462)
T ss_dssp HHHHHHCCTTS-EEESS-S--HHHHHCTSB-SSHHHHHTSTTHHHHHHHHHTT-HGGGTTCSSSHHHHHHHHHHHGGGGT
T ss_pred HHHHHHHHhCCCEeCCCCCCChHHHhhcCCCCCHHHHhccCchhHHHHHHHcCCCccccCCCCCCHHHHHHHHHhhhhhc
Confidence 356654 89999999999965421 1 1224344444433210 12355
Q ss_pred cchhhhhHHHHHHhhhCCCC-----CHHHHHHHHH-Hc-CcccHHHHHHhhCCcEEEEEecCCCCCCCCChHHHHhhcc-
Q 003372 49 YSLSFKRNLKNIAELYGCDS-----SLQAVEEYRR-AA-GLQSICSICFEAANISAVLIDDGLKLDKKHGLDWHKSLVP- 120 (825)
Q Consensus 49 ~~~~~~~~~~~l~~~fg~~~-----~~~~i~~~~~-~l-~~~~~~r~ll~~~~v~~~~~d~g~~~d~~~~~~~h~~~~~- 120 (825)
++..|.|..++|+++|||++ |+++||++++ .+ .+++++|.|++++||++||| ||||+|+|+||+.++.
T Consensus 96 gnp~~~W~hleL~r~FGid~~L~~~~a~~I~d~~n~~l~~~~~~~r~l~~~~nV~~v~T----TDDP~D~L~~H~~l~~~ 171 (462)
T PF02614_consen 96 GNPLYHWTHLELKRYFGIDEPLSEENADEIWDACNEKLATPEFSPRALLRRSNVEVVCT----TDDPLDDLEYHRWLAED 171 (462)
T ss_dssp TSHHHHHHHHHHHHCTT--C-GSHHHHHHHHHHHHHHHTSGGGSHHHHHHHTTEEEEE------B-TTSHHHHHHHHHCH
T ss_pred CCHHHHHHHHHHHHHcCCCCCCCccCHHHHHHHHHHHhcccCcCHHHHHHHCCceEEEe----CCCCCCchHHHHHHhcc
Confidence 78889999999999999996 8999999998 44 67799999999999999999 9999999999999973
Q ss_pred -----------CCCeEEeccchHH-HHHHhhCC--CCCcccHHHHHHHHHHHHHhhcccccceeeeeec--ccCCCCCCC
Q 003372 121 -----------FVGRILRIERLAE-EILDQASP--DGSIWTLDVFIETFLKQLRSAANKIVGLKSIAAY--RSGLEINPH 184 (825)
Q Consensus 121 -----------~~~~i~rie~~~~-~~~~~~~~--~~~~~~~~~~~~al~~~l~~~~~~~vgfks~~ay--~~Gl~~~~~ 184 (825)
|||+++.|+...+ ++++++++ +.+|.++++|++|+++|+++ |++.||. +||++..+.
T Consensus 172 ~~~~~~v~PtfRpD~~l~i~~~~~~~~l~~L~~~~g~~i~~~~~l~~Al~~r~~~-------F~~~G~~~sDh~l~~~~~ 244 (462)
T PF02614_consen 172 ENFDPRVLPTFRPDKALNIDWPGFADYLEKLGEAAGIEISTFEDLLEALRKRRDY-------FKEMGCRASDHGLPDFPF 244 (462)
T ss_dssp CCT-TEEE-EBEGHHHHHTTSTTHHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHH-------HHHTT-SEEEEEESS--S
T ss_pred CCCCceEecccCcccccCCChhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH-------HHHhCCeEeecCCCcccC
Confidence 3688888888766 88888887 34899999999999999999 7777884 999985544
Q ss_pred --CCHHHHHHHHHHHHhCCCCCcCCchhhhhHHHHHHHHHHhhCCCcEEEeeCC------------C-CCCCCCCCC---
Q 003372 185 --VTKKDAEEGLAEDLRSGKPVRITNKSLIDYIFISSLEVAQFLDLPLQIHTGF------------G-DKDLDLRLS--- 246 (825)
Q Consensus 185 --~~~~ea~~~~~r~l~~~~~~~~~~~~l~d~~l~~l~e~~~e~glpvq~H~G~------------g-d~~~~~~~~--- 246 (825)
++.++++++|.|+++++.....+...+..+++..+.++|+|+|||||+|.|. | |+|.|....
T Consensus 245 ~~~~~~e~~~if~k~~~g~~ls~~e~~~~~~~ll~~l~~~~~e~g~vmQlHiGa~Rn~n~~~~~~lG~D~G~D~~~~~~~ 324 (462)
T PF02614_consen 245 PPPSEEEAERIFKKALAGESLSAEEIDKFRTYLLWELAKMYAERGWVMQLHIGALRNNNSRMFPRLGPDTGFDSIGDFPD 324 (462)
T ss_dssp S---HHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHHHT-EEEEEE-EETTSSHHHHHHTGSSSSG-EE-S--H
T ss_pred CCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEecCcccCCCHHHHHHhCCCCCCCCCCchHH
Confidence 6789999999999887544444556677779999999999999999999998 3 445554333
Q ss_pred -Chh--chHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCC-----eeeeccccccCcccHHHHHHHHHHHHHHCCCC
Q 003372 247 -NPL--HLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYP-----QVYLDFGLAIPKLSVQGMISSIKELLELAPTK 318 (825)
Q Consensus 247 -~P~--~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~p-----NVyld~s~~~~~~~~~g~~~~l~~~le~~~~~ 318 (825)
.++ +|+.+-+.+++|++.++++++. +..+++.+|++|| |||++.+|||++. ++||.++|+.+.+.++..
T Consensus 325 ~~~L~~ll~~~~~~~~lpk~ily~Ln~~--~~~~la~lag~F~~~~~~~vq~G~~WWF~D~-~~gm~~q~~~~~~~~ll~ 401 (462)
T PF02614_consen 325 AEALSRLLDRFDNNGKLPKTILYSLNPT--DNHELATLAGNFQDGGIPKVQLGGAWWFNDT-PDGMERQMTALAEMGLLS 401 (462)
T ss_dssp HHHHHHHHHHHTTTTT-SEEEEEESSGG--GHHHHHHHHHHST-TTSTTEEEB---GGG-S-HHHHHHHHHHHHHHCHGC
T ss_pred HHHHHHHHHhccccCCCceeEEEecChh--hHHHHHHHHhhcCCcCcceeeecCcccccCC-HHHHHHHHHHHHHHhCcc
Confidence 222 3444444567788888888886 5678999999999 9999999999986 889999999999999999
Q ss_pred cEE-EecCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCChHHHH--HHHHHHHHHhHHHHh
Q 003372 319 KVM-FSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAI--EVAKDIFALNAAQFY 378 (825)
Q Consensus 319 kil-fgSD~~~~P~~~~~~~~~~r~~l~~~l~~~v~~g~l~~~~a~--~~~~~Il~~NA~rly 378 (825)
+++ |.||||+|.+ |++|++|||+||++|++||++|+++.+++. +++++|||+||+++|
T Consensus 402 ~fvGmltDsRsflS--~~RheyfRRilc~~lg~~ve~g~~p~d~~~l~~~v~di~y~na~~yf 462 (462)
T PF02614_consen 402 NFVGMLTDSRSFLS--YPRHEYFRRILCNVLGEWVEEGEWPEDEAFLGRIVEDICYNNAKRYF 462 (462)
T ss_dssp GCB------SCTTH--HHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHTHHHHHHC
T ss_pred ceeceecchHHHhh--hhHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhHHHhC
Confidence 999 9999999994 689999999999999999999999998854 899999999999986
No 11
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism]
Probab=99.96 E-value=9.7e-30 Score=266.75 Aligned_cols=276 Identities=20% Similarity=0.251 Sum_probs=203.6
Q ss_pred hhhccCCceEEEEEEecCCC-CceeEEeechhhhhHHhhccccccccccccccccCCCCCCCCCCCCCcEEEEEecCCcE
Q 003372 401 SDAFESDVSLIRVIWVDASG-QHRCRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTNLSGTGEIRLMPDLSTRW 479 (825)
Q Consensus 401 ~~~~~~~i~~v~l~~~D~~G-~~R~k~vp~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~~~~~~d~~L~PD~sT~~ 479 (825)
.|-..++-..+.++|+|.+| .+|+|+-....-.+.+.+. + .+.+ |+...+...+..+|.+|+|. .+.
T Consensus 22 ~L~~~~~kv~a~YVwidg~ge~~rsk~rt~d~~~~~~~~l----p--~wny----dgsst~QA~g~nSd~~l~Pv--a~~ 89 (380)
T KOG0683|consen 22 YLRAKRKKVQAEYVWIDGTGENLRSKTRTLDAEPSSISEL----P--IWNY----DGSSTGQAPGENSDVYLRPV--AIY 89 (380)
T ss_pred cccccCceEEEEEEEecCccccchhhcccccCCccCcccC----c--cccc----cCcccccccCCCCceEEeeh--hhc
Confidence 44555566688899999999 7999987766544433211 1 1111 11111112244689999998 788
Q ss_pred eccCCCc-ccceeEEEEcCCCCcCCCChHHHHHHHHHHHHHhcCceEEEeeeeEEEEEeeccc--CCCC-CCccCCCCCc
Q 003372 480 RIPWQKQ-EEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLR--EGKE-EWVPIDFTPY 555 (825)
Q Consensus 480 ~~p~~~~-~a~v~~~~~~~~g~p~~~~pR~~L~~~~~~~~~~~g~~~~~g~E~EF~l~~~~~~--~~~~-~~~p~~~~~~ 555 (825)
+.|+..+ ...|+|+.++.+|.|.+.+-|....+++....- ..-+|++|.|+|+.+++.... -|++ ..-|..+++|
T Consensus 90 ~dPfr~g~Nilv~c~~~~~~~~P~~tn~R~~c~~~~~~~~~-~~~~PWfg~Eqeyt~l~~~~~~p~gwp~~GFp~Pqgpy 168 (380)
T KOG0683|consen 90 PDPFRNGNNILVMCDTYDFDGKPTETNKRVACARIMPKLST-KDTEPWFGMEQEYTLLDALDGHPFGWPKGGFPGPQGPY 168 (380)
T ss_pred CCcccCCCCEEEEeeccCCCCCcccccchhhHHHHhccccc-cccCCchhhhHHHhhhccccCCcccCCccCCCCCCCCc
Confidence 9999876 478999999999999999999999999998752 245899999999999987311 1221 1135567888
Q ss_pred CcCCccCC--chHHHHHHHHHHHhCCCCeeeeecCCCCCceEEecCcChHHHHHHHHHHHHHHHHHHHHHCCCeEEeccc
Q 003372 556 CSTAAYDA--VSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPN 633 (825)
Q Consensus 556 ~~~~~~~~--~~~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~r~~i~~iA~~~Gl~AtF~pK 633 (825)
|+..+.++ ..++.+..+.+|...||++.+++.|+.||||||++.|+.++.++|+++.+|+++++||+++|+.|||.||
T Consensus 169 yc~VGad~~~~rdiveahy~acLyaGl~i~G~N~EvmPgQwEfqvGp~~GI~~gD~lw~aR~il~rVae~~Gviasf~pK 248 (380)
T KOG0683|consen 169 YCGVGADRVFGRDIVEAHYRACLYAGLNISGINVEVMPGQWEFQVGPCEGISMGDQLWMARYILHRVAEKFGVIASFDPK 248 (380)
T ss_pred eeeccccccccchhhhhhHHHHHhhheeeccccccccCceeEEeecchhcccchhhHHHHHHHHHHHHHHhCeeEEecCC
Confidence 88777665 5789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----ccCC-CCcccccCCCCCCCCCcHHHHHHHHHHHHHHHHHHhhhCCCCCCccCCCCCCcCCcccccccCCCCCccc
Q 003372 634 ----LWQN-GENVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVPNSYDRIQPNTWSGAYQCWGKENREAPLR 707 (825)
Q Consensus 634 ----l~~~-g~n~f~~~~~~~~~~ls~~~~~fiaGil~h~~al~a~~~P~~nSY~Rl~~g~~ap~~~~WG~~NR~a~iR 707 (825)
+|++ |.|..+| ++..+.+ |..++....+|..++|+|.....|. -+||.+|+....+
T Consensus 249 p~~g~WngaG~Htn~S-----------T~~mr~~----~g~~~i~~a~~~ls~rh~~hi~~yd---p~~G~dN~rrltg 309 (380)
T KOG0683|consen 249 PILGDWNGAGCHTNFS-----------TKEMREA----GGLKIIEEAIPKLSKRHREHIAAYD---PKGGKDNERRLTG 309 (380)
T ss_pred CCCCcccCcccccccc-----------hhHHHhc----cCHHHHHHHhhhcchhhhhhhhhcC---ccCCccchhhhcC
Confidence 5653 3333332 3445555 5555666667777777777765553 3444444444444
No 12
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=99.92 E-value=2.9e-24 Score=231.62 Aligned_cols=196 Identities=29% Similarity=0.373 Sum_probs=156.0
Q ss_pred HHHHHHHHhhcccccceeeeeecccCCCCCCCCCHHHHHHHHHHHHhCCC--C----CcCCchhhhhHHHHHHHHHHhhC
Q 003372 153 ETFLKQLRSAANKIVGLKSIAAYRSGLEINPHVTKKDAEEGLAEDLRSGK--P----VRITNKSLIDYIFISSLEVAQFL 226 (825)
Q Consensus 153 ~al~~~l~~~~~~~vgfks~~ay~~Gl~~~~~~~~~ea~~~~~r~l~~~~--~----~~~~~~~l~d~~l~~l~e~~~e~ 226 (825)
+.+.+-...++++++||.+ ++|. +++.|.++++|+++..+ + ........++..++|+|+.|+++
T Consensus 87 d~~a~~~~~~pdrf~~~~~---------v~p~-~~~~a~~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~ 156 (293)
T COG2159 87 DDLAALAAEYPDRFVGFAR---------VDPR-DPEAAAEELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEEL 156 (293)
T ss_pred HHHHHHHhhCCcceeeeee---------eCCC-chHHHHHHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHc
Confidence 3455555567899999998 7776 55778899999998631 1 23345567777899999999999
Q ss_pred CCcEEEeeCCCCCCCCCCC--CChhchHHHHhhcCCCCcEEEEeCCC--CchHHHHHHHHHhCCeeeeccccccCcccHH
Q 003372 227 DLPLQIHTGFGDKDLDLRL--SNPLHLRAILEDKRFSKCRFVLLHAS--YPFSKEASYLAYVYPQVYLDFGLAIPKLSVQ 302 (825)
Q Consensus 227 glpvq~H~G~gd~~~~~~~--~~P~~L~~l~~~~~~P~l~ivl~H~g--~p~~~e~~~la~~~pNVyld~s~~~~~~~~~ 302 (825)
|+||++|+|.++.+..... ++|++++++++ +||+++||++|+| +||..++.+++..+||||+|+|.+.+.+..
T Consensus 157 gvpv~ihtG~~~~~~~~~~~~~~p~~~~~va~--~fP~l~IVl~H~G~~~p~~~~a~~~a~~~~nvy~d~s~~~~~~~~- 233 (293)
T COG2159 157 GVPVVIHTGAGPGGAGLEKGHSDPLYLDDVAR--KFPELKIVLGHMGEDYPWELEAIELAYAHPNVYLDTSGVRPKYFA- 233 (293)
T ss_pred CCCEEEEeCCCCCCcccccCCCCchHHHHHHH--HCCCCcEEEEecCCCCchhHHHHHHHHhCCCceeeeeccccccCC-
Confidence 9999999999866655555 89999999999 8999999999999 999999999999999999999999776522
Q ss_pred HHHHHHHHHHHHCCCCcEEEecCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhHHHHhcCCC
Q 003372 303 GMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKINL 382 (825)
Q Consensus 303 g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~r~~l~~~l~~~v~~g~l~~~~a~~~~~~Il~~NA~rly~L~~ 382 (825)
...++.+.+ .+.+||||||| ||... ...+.+... ...++ + +.+++||++||+|||+++.
T Consensus 234 --~~~~~~~~~-~~~dkilFGSD---~P~~~--~~~~l~~~~---------~l~l~--~--e~k~kiL~~NA~rll~l~~ 292 (293)
T COG2159 234 --PPLLEFLKE-LGPDKILFGSD---YPAIH--PEVWLAELD---------ELGLS--E--EVKEKILGENAARLLGLDP 292 (293)
T ss_pred --hHHHHHHHh-cccCeEEecCC---CCCcC--HHHHHHHHH---------hcCCC--H--HHHHHHHHHhHHHHhCcCC
Confidence 257788888 88899999999 88533 322332221 12344 3 7899999999999999874
No 13
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=99.77 E-value=4.3e-19 Score=189.55 Aligned_cols=202 Identities=25% Similarity=0.324 Sum_probs=134.9
Q ss_pred HHHHHHHHhhcccccceeeeeecccCCCCCCCCCHHHHHHHHHHHHhCC--CCC----cCCchhhhhHHHH-HHHHHHhh
Q 003372 153 ETFLKQLRSAANKIVGLKSIAAYRSGLEINPHVTKKDAEEGLAEDLRSG--KPV----RITNKSLIDYIFI-SSLEVAQF 225 (825)
Q Consensus 153 ~al~~~l~~~~~~~vgfks~~ay~~Gl~~~~~~~~~ea~~~~~r~l~~~--~~~----~~~~~~l~d~~l~-~l~e~~~e 225 (825)
+.+.+.....+++++|+.. +.+. +.+++.+++++++... .+. ........+..+. ++|+.|++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~l~~~~~~~g~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~ 128 (273)
T PF04909_consen 59 DWLVELAAKHPDRFIGFAA---------IPPP-DPEDAVEELERALQELGFRGVKLHPDLGGFDPDDPRLDDPIFEAAEE 128 (273)
T ss_dssp HHHHHHHHHSTTTEEEEEE---------ETTT-SHHHHHHHHHHHHHTTTESEEEEESSETTCCTTSGHCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEE---------ecCC-CchhHHHHHHHhccccceeeeEecCCCCccccccHHHHHHHHHHHHh
Confidence 3344444455677777765 4443 5788899999999543 111 1122334555555 99999999
Q ss_pred CCCcEEEeeC-CCCCCCCCCCCChhchHHHHhhcCCCCcEEEEeCCCCc--hHHHHHHHHHhCCeeeeccccccCc---c
Q 003372 226 LDLPLQIHTG-FGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYP--FSKEASYLAYVYPQVYLDFGLAIPK---L 299 (825)
Q Consensus 226 ~glpvq~H~G-~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p--~~~e~~~la~~~pNVyld~s~~~~~---~ 299 (825)
+|+||.+|+| .+..+.......|..+.++++ +||+++||+.|+|.| +..++..++..+||||+|+|+..+. .
T Consensus 129 ~~~pv~~H~g~~~~~~~~~~~~~~~~~~~~~~--~~P~l~ii~~H~G~~~~~~~~~~~l~~~~~nvy~d~s~~~~~~~~~ 206 (273)
T PF04909_consen 129 LGLPVLIHTGMTGFPDAPSDPADPEELEELLE--RFPDLRIILAHLGGPFPWWEEALRLLDRFPNVYVDLSGIPPFWYFW 206 (273)
T ss_dssp HT-EEEEEESHTHHHHHHHHHHHHHHHTTHHH--HSTTSEEEESGGGTTHHHHHHHHHHHHHHTTEEEECHSHHSSEEEE
T ss_pred hccceeeeccccchhhhhHHHHHHHHHHHHHH--HhcCCeEEEecCcccchhHHHHHHHHHhCCcccccccccccccccC
Confidence 9999999988 222122233456778899999 899999999999999 8889999999999999999995321 1
Q ss_pred cHHHHHHHHHHHHHHCCCCcEEEecCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhHHHHhc
Q 003372 300 SVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYK 379 (825)
Q Consensus 300 ~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~r~~l~~~l~~~v~~g~l~~~~a~~~~~~Il~~NA~rly~ 379 (825)
........+..+++..|.+||||||| ||....... ........... .++. +..++|+++||+|+|+
T Consensus 207 ~~~~~~~~l~~~~~~~g~drilfGSD---~P~~~~~~~--~~~~~~~~~~~-----~l~~----~~~~~i~~~NA~rl~~ 272 (273)
T PF04909_consen 207 PPSFDRPFLRRAVDEFGPDRILFGSD---YPHPDGASP--YEYIWEAYFLD-----DLSE----EEREKILYDNARRLYG 272 (273)
T ss_dssp TTHHCHHHHHHHHHHHTGGGEEEE-----TTSSTHHHH--HHHHHHHHHHH-----HSSH----HHHHHHHTHHHHHHHT
T ss_pred cccccHHHHHHHHHHhCCceEEecCC---CCCCCcccc--HHHHHHhhhcc-----CCCH----HHHHHHHhHhHHHHcC
Confidence 11233457888888999999999999 664322111 11111111000 1453 6899999999999998
Q ss_pred C
Q 003372 380 I 380 (825)
Q Consensus 380 L 380 (825)
|
T Consensus 273 l 273 (273)
T PF04909_consen 273 L 273 (273)
T ss_dssp C
T ss_pred c
Confidence 6
No 14
>COG3968 Uncharacterized protein related to glutamine synthetase [General function prediction only]
Probab=99.61 E-value=1.2e-14 Score=155.61 Aligned_cols=217 Identities=24% Similarity=0.337 Sum_probs=162.2
Q ss_pred eEEEeeeeEEEEEeecccCCCCC-----------CccCC---CCCcCcCCccCCchHHHHHHHHHHHhCCCCeeeeecCC
Q 003372 524 VLNAGFEIEFYLLKSVLREGKEE-----------WVPID---FTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEA 589 (825)
Q Consensus 524 ~~~~g~E~EF~l~~~~~~~~~~~-----------~~p~~---~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~ 589 (825)
-..+|.|+||||+++...+..+. ..|.. ..||++..+ ++...||.++-..|.++||++..-|.|+
T Consensus 215 ~s~~GaEQEYFlvd~~~~~~RpDLi~tGRTLFGa~ppkGQEldDHYFGaip-eRV~~FM~Dve~~LyaLGIpaKTrHNEV 293 (724)
T COG3968 215 FSNVGAEQEYFLVDKKSYDERPDLIFTGRTLFGAPPPKGQELDDHYFGAIP-ERVSAFMKDVEKELYALGIPAKTRHNEV 293 (724)
T ss_pred ccCCCccceeEEechhhcccCcceeeechhhcCCCCCCCccccchhccccH-HHHHHHHHHHHHHHHHcCCccccccccc
Confidence 47899999999998632221111 11222 236776554 5678999999999999999999999999
Q ss_pred CCCceEEecCcChHHHHHHHHHHHHHHHHHHHHHCCCeEEecccccC----CCCcccccCCCC----------CCCCCcH
Q 003372 590 GKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPNLWQ----NGENVFMASDSS----------SKHGMSS 655 (825)
Q Consensus 590 ~pGQ~Ei~l~~~~~l~aaD~~~~~r~~i~~iA~~~Gl~AtF~pKl~~----~g~n~f~~~~~~----------~~~~ls~ 655 (825)
+||||||..-+.++.-|+|+-++..+++|.+|++||+.+..+-|++. +|+|+.+|...+ .++ -+.
T Consensus 294 APgQfEIApife~~N~A~DhqQL~M~vLk~tA~KhGlVCLLHEKPFAGiNGSGKH~NWSmGtd~g~NLLdPgD~Ph-dN~ 372 (724)
T COG3968 294 APGQFEIAPIFESGNLATDHQQLVMEVLKKTALKHGLVCLLHEKPFAGINGSGKHNNWSMGTDDGLNLLDPGDMPH-DNK 372 (724)
T ss_pred CCCceeeeeeeccccccchHHHHHHHHHHHHHHhcceEEEeecCCccCcCCCCCccccccccCCCcccCCCCCCCC-ccc
Confidence 99999999999999999999999999999999999999999999663 355555553211 111 123
Q ss_pred HHHHHHHHHHHH---HHHHHhhhCCCCCCccCCCCCCcCCc-c--cccc-------------------------------
Q 003372 656 VGEKFMAGVLHH---LSSILAFTAPVPNSYDRIQPNTWSGA-Y--QCWG------------------------------- 698 (825)
Q Consensus 656 ~~~~fiaGil~h---~~al~a~~~P~~nSY~Rl~~g~~ap~-~--~~WG------------------------------- 698 (825)
...-|.+.+++. ..+++.++..+...-.||..+ +||. . +.-|
T Consensus 373 QFL~Fc~AvIkaVdkY~~LlRa~~a~AsNDhRLGAN-EAPPAI~SVflGdqLedifEqi~~G~~~ssk~~g~mdLg~~vl 451 (724)
T COG3968 373 QFLLFCTAVIKAVDKYADLLRASAANASNDHRLGAN-EAPPAIISVFLGDQLEDIFEQIEKGKATSSKGNGKMDLGISVL 451 (724)
T ss_pred eeehhhHHHHHHHHHHHHHHHHHHhccCCccccccC-CCCcceeEeeccchHHHHHHHHhcCCCcccccCcccccchhhc
Confidence 345566666543 467778888888778899864 3552 2 2233
Q ss_pred --------cCCCCCcccccCCCCCCCCCcceEEecCCCCC---CChHHHHHHHHHHHHHHHhc-cC
Q 003372 699 --------KENREAPLRTACPPGVKDGVVSNFELKSFDGC---ANPHLGLAAIIASGIDGLRR-LC 752 (825)
Q Consensus 699 --------~~NR~a~iRv~~~~~~~~~~~~~~E~R~~d~~---aNPYL~lAailaAgl~Gi~~-l~ 752 (825)
..||+.|+-.. | ++||+|.++++ +-|-.+|.+++|--+.-|.. ++
T Consensus 452 P~v~kdAgDRNRTSPFAFT---G------NkFEFRavgSSqSvs~P~tVLN~~vAesl~~i~drLe 508 (724)
T COG3968 452 PAVEKDAGDRNRTSPFAFT---G------NKFEFRAVGSSQSVSEPNTVLNVIVAESLSEIADRLE 508 (724)
T ss_pred cccccccccccCCCCceec---c------ceeeEecCCcccccccchHHHHHHHHHHHHHHHHHHH
Confidence 37888888773 3 58999999887 66999999999999888877 65
No 15
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=99.44 E-value=1.2e-12 Score=140.07 Aligned_cols=140 Identities=12% Similarity=0.058 Sum_probs=97.1
Q ss_pred hhHHHHHHHHHHhhCCCcEEEeeCCCCCCCCCCCCChhchHHHHhhcCCCCcEEEEeCCCCch---------HHHHHHHH
Q 003372 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPF---------SKEASYLA 282 (825)
Q Consensus 212 ~d~~l~~l~e~~~e~glpvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~---------~~e~~~la 282 (825)
++..+.++++.|+++|+|+++|+|... -..+..+++ +| +++||+.|+|.|+ +.+...++
T Consensus 108 ~~~~~~~~~~~~~~~gl~v~~~~~~~~---------l~~l~~l~~--~~-~l~ivldH~G~p~~~~~~~~~~~~~~l~~l 175 (263)
T cd01311 108 NKDELDEIAKRAAELGWHVQVYFDAVD---------LPALLPFLQ--KL-PVAVVIDHFGRPDVTKGVDGAEFAALLKLI 175 (263)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEeCHhh---------HHHHHHHHH--HC-CCCEEEECCCCCCCCCCCCCHhHHHHHHHH
Confidence 666788999999999999999997431 124677888 78 9999999999765 23445555
Q ss_pred HhCCeeeeccccccCc----ccHHHHHHHHHHHHHHCCCCcEEEecCCCCCcchhhh---hHHHHHHHHHHHHHhhhcCC
Q 003372 283 YVYPQVYLDFGLAIPK----LSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFL---GAKRAREVVFSVLRDTCIDE 355 (825)
Q Consensus 283 ~~~pNVyld~s~~~~~----~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~---~~~~~r~~l~~~l~~~v~~g 355 (825)
.+||||+++|++... .....+...++.+++. |.+|+||||| ||.+... ........+.. +..
T Consensus 176 -~~pNV~~k~Sg~~~~~~~~~~~~~~~~~~~~~~~~-g~dRlmfGSD---~P~~~~~~~~~~~~~~~~~~~-~~~----- 244 (263)
T cd01311 176 -EEGNVWVKVSGPYRLSVKQEAYADVIAFARQIVAA-APDRLVWGTD---WPHPRLREPDPMPDDGALLRL-IPS----- 244 (263)
T ss_pred -hcCCEEEEecchhhcCCCCCCHHHHHHHHHHHHHh-CCCcEEEeCC---CCCCCccccCCCCCHHHHHHH-HHH-----
Confidence 899999999986421 1123466788888877 8899999999 7754211 00112222221 122
Q ss_pred CCChHHHHHHHHHHHHHhHHHH
Q 003372 356 DLSVGEAIEVAKDIFALNAAQF 377 (825)
Q Consensus 356 ~l~~~~a~~~~~~Il~~NA~rl 377 (825)
.++. ++.+++|+++||+||
T Consensus 245 ~~~~---~~~~~~~~~~n~~~~ 263 (263)
T cd01311 245 WAPD---AQLQRKNLVDNPARL 263 (263)
T ss_pred HcCC---HHHHHHHHHhChhhC
Confidence 2332 267999999999985
No 16
>PF03951 Gln-synt_N: Glutamine synthetase, beta-Grasp domain; InterPro: IPR008147 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) has, currently, only been found in Bacteroides fragilis and in Butyrivibrio fibrisolvens. It is a hexamer of identical chains. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006542 glutamine biosynthetic process, 0006807 nitrogen compound metabolic process; PDB: 3NG0_A 2D3A_A 2D3C_E 2D3B_H 1LGR_C 2GLS_I 1F1H_B 1FPY_C 2LGS_D 1F52_A ....
Probab=99.37 E-value=1e-12 Score=115.12 Aligned_cols=80 Identities=20% Similarity=0.434 Sum_probs=65.2
Q ss_pred CceEEEEEEecCCCCceeEEeechhhhhHHhhcccccccccc-ccccccCCCCCCCCCCCCCcEEEEEecCCcEeccCCC
Q 003372 407 DVSLIRVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACM-GMTSAVDGPADGTNLSGTGEIRLMPDLSTRWRIPWQK 485 (825)
Q Consensus 407 ~i~~v~l~~~D~~G~~R~k~vp~~~~~~~~~~~g~~~~~~~~-~~~~~~d~~~~~~~~~~~~d~~L~PD~sT~~~~p~~~ 485 (825)
+|+||+++|+|+.|.+|++.+|++++.+.+.+.|++|++|+. ++.. ...+|++|+||++|++++||.+
T Consensus 1 ~V~~v~~~f~D~~G~~~~~~i~~~~~~~~~~~~g~~fDGSSi~g~~~-----------~~~SDm~l~Pd~~t~~~~P~~~ 69 (84)
T PF03951_consen 1 NVKFVDLQFTDLFGRLKHVTIPASEFDEDALEDGIGFDGSSIRGFAT-----------IEESDMYLKPDPSTFFIDPWRP 69 (84)
T ss_dssp T-EEEEEEEE-TTSSEEEEEEEGCCESCSGGGS-EEEECCGTTTSSB-----------SCCEEEEEEEEGGEEEESTTTS
T ss_pred CeEEEEEEEEcCCCCcceEEEEHHHCCchHhhCCCCCCcccCcCccc-----------CCCCCEEEecCcccEEECccCC
Confidence 589999999999999999999999994444578999998886 4432 2357999999999999999986
Q ss_pred c---ccceeEEEEcC
Q 003372 486 Q---EEMIMADMHLK 497 (825)
Q Consensus 486 ~---~a~v~~~~~~~ 497 (825)
+ ++.|+|+++++
T Consensus 70 ~~~~~~~v~cdv~~P 84 (84)
T PF03951_consen 70 DPGKTARVICDVYDP 84 (84)
T ss_dssp TT-TEEEEEEEEEST
T ss_pred CCceEEEEEEEeECc
Confidence 4 69999999974
No 17
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=99.17 E-value=1.1e-09 Score=114.73 Aligned_cols=147 Identities=19% Similarity=0.242 Sum_probs=101.6
Q ss_pred hhhhhHHHHHHHHHHhhCCCcEEEeeCCCCCCCCCCCCChhchHHHHhhcCCCCcEEEEeCCCCc---------hHHHHH
Q 003372 209 KSLIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYP---------FSKEAS 279 (825)
Q Consensus 209 ~~l~d~~l~~l~e~~~e~glpvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p---------~~~e~~ 279 (825)
+.+....+...++..+++||++.+++-.. ..| .+..++. .+|+++||+-|+|.| |...+.
T Consensus 119 ~~~~a~~~r~~~~rL~~~gl~fdl~~~~~--------ql~-~~i~l~~--~~Pd~~~VldH~G~p~~~~~~~~~w~~~m~ 187 (279)
T COG3618 119 GLFEAPAWRANVERLAKLGLHFDLQVDPH--------QLP-DLIPLAL--KAPDVNFVLDHCGRPDIKINLEDPWKAALA 187 (279)
T ss_pred cchhhHHHHHHHHHHHhcCCeEEEEeChh--------hhH-HHHHHHh--hCCCCCEEeccCCCCCccccccCHHHHHHH
Confidence 34444567777888999999999997421 122 2334455 699999999999976 333334
Q ss_pred HHHHhCCeeeeccccccCcc----cHHHHHHHHHHHHHHCCCCcEEEecCCCCCcchhhhhHHHHHHHHHHHHHhhhcCC
Q 003372 280 YLAYVYPQVYLDFGLAIPKL----SVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDE 355 (825)
Q Consensus 280 ~la~~~pNVyld~s~~~~~~----~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~r~~l~~~l~~~v~~g 355 (825)
.++ ..||||+.+|+..-+. .....+.+.+.+++..|.+|+||||| ||-+...+. +-. +.+...+++..
T Consensus 188 ~la-~~pNv~~KlSG~~~~~~~~w~~~~v~p~~e~~i~~fg~dR~vfGSd---wPv~~l~~~--~~~-~~~~~~~~v~~- 259 (279)
T COG3618 188 RLA-RRPNVWAKLSGVYAYSDESWTVEDVRPYVEELIELFGWDRFVFGSD---WPVTSLESD--FAS-WVAATRELVPG- 259 (279)
T ss_pred HHH-hCCCeEEEEeeecccccCCCCHHHHHHHHHHHHHhcCccceEecCC---CCcccccCC--hHH-HHHHHHHHcCC-
Confidence 444 7899999999954222 23456678999999999999999999 887654431 111 11233343321
Q ss_pred CCChHHHHHHHHHHHHHhHHHHhcC
Q 003372 356 DLSVGEAIEVAKDIFALNAAQFYKI 380 (825)
Q Consensus 356 ~l~~~~a~~~~~~Il~~NA~rly~L 380 (825)
+. ++..+||++||+|+|++
T Consensus 260 --~~----~er~~i~~~NA~rly~~ 278 (279)
T COG3618 260 --DA----AERARILVDNARRLYRL 278 (279)
T ss_pred --CH----HHHHHHHhhCHHHHhCC
Confidence 22 68999999999999986
No 18
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=98.97 E-value=3e-09 Score=112.58 Aligned_cols=147 Identities=21% Similarity=0.271 Sum_probs=92.7
Q ss_pred hhhhHHHHHHHHHHhhCCCcEEEeeCCCCCCCCCCCCChhchHHHHhhcCCC-CcEEEEeCCCCchHHHHHHHHHhCCee
Q 003372 210 SLIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFS-KCRFVLLHASYPFSKEASYLAYVYPQV 288 (825)
Q Consensus 210 ~l~d~~l~~l~e~~~e~glpvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P-~l~ivl~H~g~p~~~e~~~la~~~pNV 288 (825)
...+..+.+++++|+++|+||++|+|.+ |..+.++++ +|| ..++++ |+.......+..++. +|+
T Consensus 104 ~~q~~~~~~~~~~a~e~~~pv~iH~~~~----------~~~~~~l~~--~~~~~~~~i~-H~~~~~~~~~~~~~~--~g~ 168 (251)
T cd01310 104 EVQKEVFRAQLELAKELNLPVVIHSRDA----------HEDVLEILK--EYGPPKRGVF-HCFSGSAEEAKELLD--LGF 168 (251)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEeeCc----------hHHHHHHHH--hcCCCCCEEE-EccCCCHHHHHHHHH--cCC
Confidence 3456688999999999999999999842 556788888 787 555555 653222333334443 899
Q ss_pred eeccccccCcccHHHHHHHHHHHHHHCCCCcEEEecCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHH
Q 003372 289 YLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKD 368 (825)
Q Consensus 289 yld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~r~~l~~~l~~~v~~g~l~~~~a~~~~~~ 368 (825)
|++++.+..... ...++.+++.+|.+|+||+||++..+...+.+.......+.+++..+.+...++. +.+.+
T Consensus 169 ~~~~~~~~~~~~----~~~~~~~~~~~~~dril~~TD~p~~~~~~~~~~~~~~~~~~~~~~~la~~~gl~~----e~~~~ 240 (251)
T cd01310 169 YISISGIVTFKN----ANELREVVKEIPLERLLLETDSPYLAPVPFRGKRNEPAYVKHVAEKIAELKGISV----EEVAE 240 (251)
T ss_pred EEEeeeeeccCC----CHHHHHHHHhCChHHEEEcccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHCcCH----HHHHH
Confidence 999998753221 1256778889999999999994332211000000001111222222222235664 57999
Q ss_pred HHHHhHHHHhc
Q 003372 369 IFALNAAQFYK 379 (825)
Q Consensus 369 Il~~NA~rly~ 379 (825)
|+++||+|+|+
T Consensus 241 ~~~~N~~~ll~ 251 (251)
T cd01310 241 VTTENAKRLFG 251 (251)
T ss_pred HHHHHHHHHhC
Confidence 99999999985
No 19
>KOG4245 consensus Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=98.78 E-value=1.8e-08 Score=98.55 Aligned_cols=199 Identities=20% Similarity=0.279 Sum_probs=130.6
Q ss_pred HHHHHHHhhcccccceeeeeecccCCCCCCCCCHHHHHHHHHHHHhCC------CCCcCCchhhhhHHHHHHHHHHhhCC
Q 003372 154 TFLKQLRSAANKIVGLKSIAAYRSGLEINPHVTKKDAEEGLAEDLRSG------KPVRITNKSLIDYIFISSLEVAQFLD 227 (825)
Q Consensus 154 al~~~l~~~~~~~vgfks~~ay~~Gl~~~~~~~~~ea~~~~~r~l~~~------~~~~~~~~~l~d~~l~~l~e~~~e~g 227 (825)
-|.+....+|+++||+-. + |.-.++.|.++++||+.+. -++++..+.++..-++|+|..|+++.
T Consensus 55 dl~ae~~kfp~r~v~lgt---------l-pmn~~e~avee~~rcvk~lg~~g~eigshv~e~~ld~~d~~ply~~~e~l~ 124 (297)
T KOG4245|consen 55 DLAAECQKFPDRFVGLGT---------L-PMNAPELAVEEMERCVKELGFKGFEIGSHVAEKDLDAQDFFPLYAAAEELK 124 (297)
T ss_pred HHHHHHHhcchhccccCc---------c-CCcCHHHHHHHHHHHHHHcCCCceeeccccccccCchHHHhHHHHHHHhhe
Confidence 355566678899998765 3 4447899999999999753 24678888999999999999999999
Q ss_pred CcEEEeeCCC---CCCCC-----CCCCCh---------hchHHHHhhcCCCCcEEEEeCCC--CchHHHHH--------H
Q 003372 228 LPLQIHTGFG---DKDLD-----LRLSNP---------LHLRAILEDKRFSKCRFVLLHAS--YPFSKEAS--------Y 280 (825)
Q Consensus 228 lpvq~H~G~g---d~~~~-----~~~~~P---------~~L~~l~~~~~~P~l~ivl~H~g--~p~~~e~~--------~ 280 (825)
..+.+|..-- |...+ --...| ..+.++++ .||++++..+|.| ||+.+... .
T Consensus 125 ~~lfvhpwdmhmwdgrl~kywlpwlvgmpaeta~aics~img~i~~--~fpklklcfahggga~p~~~grishg~n~rpd 202 (297)
T KOG4245|consen 125 CSLFVHPWDMHMWDGRLAKYWLPWLVGMPAETAIAICSMIMGGIFE--KFPKLKLCFAHGGGAFPFIRGRISHGFNMRPD 202 (297)
T ss_pred eeEEecchhhcccccchHhhhhHHHhCCchHHHHHHHHHHHhhHHH--hCchheeeeecCCcccceeeeeeccCccCCcc
Confidence 9999998541 11110 001122 25677888 8999999999985 77765221 1
Q ss_pred H-HH---hCCeeeeccccccCcccHHHHHHHHHHHHHHCCCCcEEEecCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCC
Q 003372 281 L-AY---VYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDED 356 (825)
Q Consensus 281 l-a~---~~pNVyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~r~~l~~~l~~~v~~g~ 356 (825)
| |+ .-||-|.++-|.-...+ -...++-+++..|.++|+.||| |+||- +.-..- +++.++ .+
T Consensus 203 lca~~~~~~p~k~~g~~~tdalvh---dp~alell~~tigkd~iilgtd-ypfpl----gele~g----kliee~---~~ 267 (297)
T KOG4245|consen 203 LCAGDCKMAPKKLDGLFWTDALVH---DPKALELLIDTIGKDHIILGTD-YPFPL----GELEPG----KLIEEM---EE 267 (297)
T ss_pred hhcCcCCCChhhhccchhhhhhhc---CcHHHHHHHHhhccceEEeccC-CCCcC----cccccc----hHHHhh---cc
Confidence 1 11 12455554433211111 1246788889999999999999 44442 221111 122222 23
Q ss_pred CChHHHHHHHHHHHHHhHHHHhcCCCC
Q 003372 357 LSVGEAIEVAKDIFALNAAQFYKINLG 383 (825)
Q Consensus 357 l~~~~a~~~~~~Il~~NA~rly~L~~~ 383 (825)
++. +.++++.++||..+++++..
T Consensus 268 f~a----~~ke~l~~~nal~~l~id~n 290 (297)
T KOG4245|consen 268 FDA----EDKEDLKAGNALAFLDIDEN 290 (297)
T ss_pred cch----hhHHHhhhccchhhcccchh
Confidence 443 67999999999999998753
No 20
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=98.64 E-value=5.5e-07 Score=95.37 Aligned_cols=143 Identities=19% Similarity=0.201 Sum_probs=86.0
Q ss_pred hhHHHHHHHHHHhhCCCcEEEeeCCCCCCCCCCCCChhchHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCeeeec
Q 003372 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLD 291 (825)
Q Consensus 212 ~d~~l~~l~e~~~e~glpvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pNVyld 291 (825)
....+.+.++.|.++|+||.+|++.. +..+.++++ ++|....++.|+.......+..+.. .|+|++
T Consensus 106 q~~~~~~~~~~a~~~~~pv~iH~~~~----------~~~~~~~l~--~~~~~~~~i~H~~~~~~~~~~~~~~--~g~~~~ 171 (252)
T TIGR00010 106 QEEVFRAQLQLAEELNLPVIIHARDA----------EEDVLDILR--EEKPKVGGVLHCFTGDAELAKKLLD--LGFYIS 171 (252)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEecCc----------cHHHHHHHH--hcCCCCCEEEEccCCCHHHHHHHHH--CCCeEe
Confidence 44688999999999999999999732 233556776 5644445555872111122222222 499999
Q ss_pred cccccCcccHHHHHHHHHHHHHHCCCCcEEEecCCCCCcchhhh----hHHHHHHHHHHHHHhhhcCCCCChHHHHHHHH
Q 003372 292 FGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFL----GAKRAREVVFSVLRDTCIDEDLSVGEAIEVAK 367 (825)
Q Consensus 292 ~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~----~~~~~r~~l~~~l~~~v~~g~l~~~~a~~~~~ 367 (825)
++.+..... ...++++++..|.+|+||+||++..+...+. .....+..+ +.+.. ...++. +.+.
T Consensus 172 ~~~~~~~~~----~~~~~~~i~~~~~dril~~TD~p~~~~~~~~~~~~~p~~i~~~~-~~~a~---~~g~~~----~~~~ 239 (252)
T TIGR00010 172 ISGIVTFKN----AKSLREVVRKIPLERLLVETDSPYLAPVPYRGKRNEPAFVRYTV-EAIAE---IKGMDV----EELA 239 (252)
T ss_pred eceeEecCC----cHHHHHHHHhCCHHHeEecccCCCCCCCCCCCCCCCChhHHHHH-HHHHH---HhCcCH----HHHH
Confidence 997543211 1356677778899999999996432100000 001122211 11111 125664 5799
Q ss_pred HHHHHhHHHHhcC
Q 003372 368 DIFALNAAQFYKI 380 (825)
Q Consensus 368 ~Il~~NA~rly~L 380 (825)
+++++|++|+|+|
T Consensus 240 ~~~~~N~~~~~~~ 252 (252)
T TIGR00010 240 QITTKNAKRLFGL 252 (252)
T ss_pred HHHHHHHHHHhCc
Confidence 9999999999985
No 21
>COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism]
Probab=97.83 E-value=0.00065 Score=71.72 Aligned_cols=215 Identities=19% Similarity=0.250 Sum_probs=120.8
Q ss_pred cccHHHHHHHHHHHHHhh-c--ccccceeeeeecccCCCCCCCCCHHHHHHHHHHH-HhCCC----C-CcCCchhhhh-H
Q 003372 145 IWTLDVFIETFLKQLRSA-A--NKIVGLKSIAAYRSGLEINPHVTKKDAEEGLAED-LRSGK----P-VRITNKSLID-Y 214 (825)
Q Consensus 145 ~~~~~~~~~al~~~l~~~-~--~~~vgfks~~ay~~Gl~~~~~~~~~ea~~~~~r~-l~~~~----~-~~~~~~~l~d-~ 214 (825)
+.|.++ .-++++||-.. + .+|.-+.+ ||=+ ...++++.++++.+. +.+-+ + +.-++....| .
T Consensus 47 vtt~~~-a~aYr~rIl~a~p~~~~F~PLMt--lYLt-----d~~~peel~~a~~~g~i~a~KlYPaGaTTNS~~GV~~~~ 118 (344)
T COG0418 47 VTTVAD-ALAYRERILKAVPAGHRFTPLMT--LYLT-----DSTTPEELEEAKAKGVIRAVKLYPAGATTNSDSGVTDIE 118 (344)
T ss_pred cccHHH-HHHHHHHHHHhCcCCCCCceeEE--EEec-----CCCCHHHHHHHHhcCcEEEEEeccCCccccCcCCcCcHH
Confidence 444443 34677777664 2 34555555 5522 113688888877663 22211 1 1111111112 2
Q ss_pred HHHHHHHHHhhCCCcEEEeeCCCCCCCCCCCCChh----chHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCC-eee
Q 003372 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPL----HLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYP-QVY 289 (825)
Q Consensus 215 ~l~~l~e~~~e~glpvq~H~G~gd~~~~~~~~~P~----~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~p-NVy 289 (825)
.++|++|..++.|+|+.+|--..+...|..-.... .|..+.+ +||++|||+-|... .+++.+..... ||+
T Consensus 119 ~~~pvle~Mq~~gmpLlvHGEvt~~~vDifdrE~~Fi~~vl~pl~~--~fP~LKIV~EHiTT---~dav~~v~~~~~nla 193 (344)
T COG0418 119 KIYPVLEAMQKIGMPLLVHGEVTDAEVDIFDREAAFIESVLEPLRQ--RFPKLKIVLEHITT---KDAVEYVKDANNNLA 193 (344)
T ss_pred HHHHHHHHHHHcCCeEEEecccCCccccchhhHHHHHHHHHHHHHh--hCCcceEEEEEecc---HHHHHHHHhcCccee
Confidence 57899999999999999997666555554333333 4555666 99999999999953 34455554444 365
Q ss_pred ecccc---------cc-----Ccc-----c-HHHHHHHHHHHHHHCCCCcEEEecCCCCCcchh----------hhhHHH
Q 003372 290 LDFGL---------AI-----PKL-----S-VQGMISSIKELLELAPTKKVMFSTDAYASPETY----------FLGAKR 339 (825)
Q Consensus 290 ld~s~---------~~-----~~~-----~-~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~----------~~~~~~ 339 (825)
..+.. |+ |.. . +.--+..|+++. ..|..||.|||||-++|... |.. ..
T Consensus 194 ATIT~hHL~~nrnd~l~Ggi~Ph~fClPilKr~~hr~AL~~aa-~sg~~kfFlGtDSAPH~~~~Ke~~cgcAG~fsa-p~ 271 (344)
T COG0418 194 ATITPHHLLLNRNDMLVGGIRPHLFCLPILKRETHREALREAA-TSGHPKFFLGTDSAPHARSRKESACGCAGIFSA-PF 271 (344)
T ss_pred eEeehhheeeehhhhhcCCCCcceeeeccccchhhHHHHHHHH-hcCCCcEEecCCCCCCccccccccccccccccc-Hh
Confidence 55432 11 111 0 011122344433 45667999999987766321 110 01
Q ss_pred HHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhHHHHhcCCCC
Q 003372 340 AREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKINLG 383 (825)
Q Consensus 340 ~r~~l~~~l~~~v~~g~l~~~~a~~~~~~Il~~NA~rly~L~~~ 383 (825)
.-..++.++.+ ..|.+-.+..+..|..++|+|+..
T Consensus 272 al~~~AevFE~---------~naL~~LeaF~S~nGp~fY~lp~n 306 (344)
T COG0418 272 ALPLYAEVFEE---------ENALDNLEAFASDNGPKFYGLPRN 306 (344)
T ss_pred HHHHHHHHHHH---------hcHHHHHHHHHhhcCcceecccCC
Confidence 12233333322 113478899999999999999843
No 22
>TIGR02050 gshA_cyan_rel uncharacterized enzyme. This family represents a division of a larger family, the other branch of which is predicted to act as glutamate--cysteine ligase (the first of two enzymes in glutathione biosynthesis) in the cyanobacteria. Species containing this protein, however, are generally not believe to make glutathione, and the function is unknown.
Probab=97.80 E-value=0.00069 Score=73.51 Aligned_cols=193 Identities=24% Similarity=0.299 Sum_probs=116.3
Q ss_pred EEeeeeEEEEEeecccCCCCCCccCCCCCcCcCCccCCch-HHHHHHHHHHHhCCCCeeeeecCCCCCceEEecCcC-hH
Q 003372 526 NAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVS-PVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHT-VA 603 (825)
Q Consensus 526 ~~g~E~EF~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~-~~ 603 (825)
.+|+|.||+|+++.. ..+. .... .++.++... .| ..+++|...+|.||+..|+ +.
T Consensus 1 t~GvE~E~~lvD~~t------~~~~-----------~~~~~~~l~~~~~~---~~---~~~~~El~~~qiEi~t~p~~~~ 57 (287)
T TIGR02050 1 TLGVEEELLLVDPHT------YDLA-----------ASASAVLIGACREK---IG---AGFKHELFESQVELATPVCTTL 57 (287)
T ss_pred CceeeeeeeeEcCCc------cCcC-----------ccChHHHHHhhhhh---cc---cccChhhhccEEEecCCCcCCH
Confidence 479999999998621 1111 1112 444444322 22 3489999999999999997 78
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCeEEe---ccc-cc--------------------------CCCCcccccCCCCCCCCC
Q 003372 604 AKAADNLIFTREVLRAVARKHGLLATF---VPN-LW--------------------------QNGENVFMASDSSSKHGM 653 (825)
Q Consensus 604 l~aaD~~~~~r~~i~~iA~~~Gl~AtF---~pK-l~--------------------------~~g~n~f~~~~~~~~~~l 653 (825)
-++.+.+...+..++++|+++|+...- +|. -| -.|.++|.+.++
T Consensus 58 ~~l~~~l~~~~~~l~~~a~~~g~~l~~~G~hP~~~~~~~~~~~~~RY~~m~~~~g~~~~~~~~~g~hVhv~v~d------ 131 (287)
T TIGR02050 58 AEAAAQIRAVRARLVQAASDHGLRICGAGTHPFARWRRQEVADNPRYQRLLERYGYVARQQLVFGLHVHVGVPS------ 131 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEeccCCCCCCCccCCCCcHHHHHHHHHHHHHHHHhHceeeEEEEeCCCC------
Confidence 899999999999999999999987643 343 00 134555553321
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhCCCC---------CCccCCC----CCCcCC-cccccc--------------cCCCCCc
Q 003372 654 SSVGEKFMAGVLHHLSSILAFTAPVP---------NSYDRIQ----PNTWSG-AYQCWG--------------KENREAP 705 (825)
Q Consensus 654 s~~~~~fiaGil~h~~al~a~~~P~~---------nSY~Rl~----~g~~ap-~~~~WG--------------~~NR~a~ 705 (825)
-+..-..+..+..++|-+.|+++.++ .|||... |..--| ..-+|. ..++...
T Consensus 132 ~~~~i~~~n~l~~~lP~llALsANSPf~~G~dtg~~s~R~~i~~~~p~~G~p~~f~~~~~y~~~~~~l~~~g~i~~~~~i 211 (287)
T TIGR02050 132 PDDAVAVLNRLLPWLPHLLALSASSPFWQGFDTGYASYRRNIFQAWPTAGLPPAFGSWDAFEAYFADLLETGVIDDDGDL 211 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccccCcCCchHHHHHHHHHhCCCCCCCCcCCCHHHHHHHHHHHHHcCCcCCCCee
Confidence 12334556677888888888887664 2333111 111112 233442 1122222
Q ss_pred ---ccccCCCCCCCCCcceEEecCCCCCCCh--HHHHHHHHHHHHHHHhc-cCCC
Q 003372 706 ---LRTACPPGVKDGVVSNFELKSFDGCANP--HLGLAAIIASGIDGLRR-LCLP 754 (825)
Q Consensus 706 ---iRv~~~~~~~~~~~~~~E~R~~d~~aNP--YL~lAailaAgl~Gi~~-l~~~ 754 (825)
||... .-.++|+|++|+..++ .+++||++.+-...+-. .+.+
T Consensus 212 ww~vRp~~-------~~~tvE~Rv~D~~~~~~~~~~~aal~~~Lv~~~~~~~~~~ 259 (287)
T TIGR02050 212 WWDIRPSP-------HFGTVEVRVADTCLNLEHAVAIAALIRALVEWLLREWPAP 259 (287)
T ss_pred EEEeccCC-------CCCCeeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHhHhcC
Confidence 45321 2248999999976543 56667777777666655 4333
No 23
>PRK10812 putative DNAse; Provisional
Probab=97.78 E-value=0.00018 Score=77.16 Aligned_cols=140 Identities=21% Similarity=0.323 Sum_probs=82.9
Q ss_pred HHHHHHHHHhhCCCcEEEeeCCCCCCCCCCCCChhchHHHHhhcCCCCcEEEEeCC-CCchHHHHHHHHHhCCeeeeccc
Q 003372 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHA-SYPFSKEASYLAYVYPQVYLDFG 293 (825)
Q Consensus 215 ~l~~l~e~~~e~glpvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~-g~p~~~e~~~la~~~pNVyld~s 293 (825)
.|...+++|.++|+||.+|+-.+ .. .+-+++++...+..++| .|+ +.+ ...+..+.. .++|++++
T Consensus 112 vf~~ql~lA~e~~~Pv~iH~r~a---------~~-~~l~iL~~~~~~~~~~v-~H~fsG~-~~~a~~~~~--~G~~is~~ 177 (265)
T PRK10812 112 SFRHHIQIGRELNKPVIVHTRDA---------RA-DTLAILREEKVTDCGGV-LHCFTED-RETAGKLLD--LGFYISFS 177 (265)
T ss_pred HHHHHHHHHHHhCCCeEEEeeCc---------hH-HHHHHHHhhcCCCCCEE-EEeecCC-HHHHHHHHH--CCCEEEEC
Confidence 45556788999999999998532 11 23344552122334555 787 212 122223332 37899988
Q ss_pred cccCcccHHHHHHHHHHHHHHCCCCcEEEecCCCCC-cchhhhh----HHHHHHHHHHHHHhhhcCCCCChHHHHHHHHH
Q 003372 294 LAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYAS-PETYFLG----AKRAREVVFSVLRDTCIDEDLSVGEAIEVAKD 368 (825)
Q Consensus 294 ~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~-P~~~~~~----~~~~r~~l~~~l~~~v~~g~l~~~~a~~~~~~ 368 (825)
+...+-. ...+++++..+|.+|+|..||+++. |.. +.+ ..+...++ +.+.+. ..++. +.+..
T Consensus 178 g~~t~~~----~~~~~~~~~~ipldrlLlETD~P~~~p~~-~~g~~n~P~~i~~v~-~~ia~l---~g~~~----eei~~ 244 (265)
T PRK10812 178 GIVTFRN----AEQLRDAARYVPLDRLLVETDSPYLAPVP-HRGKENQPAMVRDVA-EYMAVL---KGVSV----EELAQ 244 (265)
T ss_pred eeeecCc----cHHHHHHHHhCChhhEEEecCCCCCCCcC-CCCCCCCcHHHHHHH-HHHHHH---hCCCH----HHHHH
Confidence 7653211 2467888999999999999997643 211 111 11222221 222222 34664 57889
Q ss_pred HHHHhHHHHhcCC
Q 003372 369 IFALNAAQFYKIN 381 (825)
Q Consensus 369 Il~~NA~rly~L~ 381 (825)
++++|++|+|+++
T Consensus 245 ~~~~N~~~lf~~~ 257 (265)
T PRK10812 245 VTTDNFARLFHID 257 (265)
T ss_pred HHHHHHHHHHCCC
Confidence 9999999999985
No 24
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=97.71 E-value=0.00054 Score=74.48 Aligned_cols=149 Identities=17% Similarity=0.220 Sum_probs=84.5
Q ss_pred HHHHHHHHHhhCCCcEEEeeCCCCCCCCCCCCChhchHHHHhhcCCCCcEEEEeCCC-CchHHHHHHHHHhCCeeeeccc
Q 003372 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHAS-YPFSKEASYLAYVYPQVYLDFG 293 (825)
Q Consensus 215 ~l~~l~e~~~e~glpvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g-~p~~~e~~~la~~~pNVyld~s 293 (825)
.|....+++.++|+||.+|++.+. .+....+. ++++..++..++++.|+. ..-...+..++. . .+|++++
T Consensus 137 ~f~~~~~lA~~~~~Pv~iH~~~~~------~~~~~~l~-~l~~~g~~~~~~vi~H~~~~~~~~~~~~~~~-~-G~~i~~~ 207 (293)
T cd00530 137 VLRAAARAQKETGVPISTHTQAGL------TMGLEQLR-ILEEEGVDPSKVVIGHLDRNDDPDYLLKIAA-L-GAYLEFD 207 (293)
T ss_pred HHHHHHHHHHHHCCeEEEcCCCCc------cccHHHHH-HHHHcCCChhheEEeCCCCCCCHHHHHHHHh-C-CCEEEeC
Confidence 345557889999999999997531 01111233 333224565678999994 222233333333 2 5777776
Q ss_pred cccCc-----ccHHHHHHHHHHHHHHCCCCcEEEecCCCCCcch--hhhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHH
Q 003372 294 LAIPK-----LSVQGMISSIKELLELAPTKKVMFSTDAYASPET--YFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVA 366 (825)
Q Consensus 294 ~~~~~-----~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~--~~~~~~~~r~~l~~~l~~~v~~g~l~~~~a~~~~ 366 (825)
..... .........++++++.++.+|||++||++..+.. .+.+.. ...+-..+....+...++. +.+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~ill~TD~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~----e~i 281 (293)
T cd00530 208 GIGKDKIFGYPSDETRADAVKALIDEGYGDRLLLSHDVFRKSYLEKRYGGHG--YDYILTRFIPRLRERGVTE----EQL 281 (293)
T ss_pred CCCcccccCCCCHHHHHHHHHHHHHCCCcCCEEEeCCcCchhhhhhccCCCC--hHHHHHHHHHHHHHcCCCH----HHH
Confidence 54321 1111234578999999999999999997542210 001110 0111112222223345664 579
Q ss_pred HHHHHHhHHHHh
Q 003372 367 KDIFALNAAQFY 378 (825)
Q Consensus 367 ~~Il~~NA~rly 378 (825)
++++.+|++|+|
T Consensus 282 ~~~~~~N~~~lf 293 (293)
T cd00530 282 DTILVENPARFL 293 (293)
T ss_pred HHHHHHCHHHhC
Confidence 999999999987
No 25
>PRK13515 carboxylate-amine ligase; Provisional
Probab=97.66 E-value=0.00088 Score=75.47 Aligned_cols=186 Identities=21% Similarity=0.235 Sum_probs=116.6
Q ss_pred eEEEeeeeEEEEEeecccCCCCCCccCCCCCcCcCCccCCchHHHHHHHHHHHhCCCCeeeeecCCCCCceEEecCcC-h
Q 003372 524 VLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHT-V 602 (825)
Q Consensus 524 ~~~~g~E~EF~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~-~ 602 (825)
.+.+|+|.||+++++. .+ .+. ... .++...+... .-..+++|-..+|.||+..|+ +
T Consensus 5 ~~t~GvE~E~~lVD~~--t~----~l~-----------~~~----~~~l~~~~~~--~~~~i~~El~~~qiEi~T~p~~~ 61 (371)
T PRK13515 5 EFTLGIEEEYLLVDPE--TR----DLR-----------SYP----DALVEACRDT--LGEQVKPEMHQSQVEVGTPVCAT 61 (371)
T ss_pred CCcceEeEeEEEecCC--cc----ccc-----------ccH----HHHHHhchhh--cCCccCcchhccEEEECCcccCC
Confidence 4689999999999862 11 110 011 2333333331 123688999999999999997 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCeEE---eccc-cc--------------------------CCCCcccccCCCCCCCC
Q 003372 603 AAKAADNLIFTREVLRAVARKHGLLAT---FVPN-LW--------------------------QNGENVFMASDSSSKHG 652 (825)
Q Consensus 603 ~l~aaD~~~~~r~~i~~iA~~~Gl~At---F~pK-l~--------------------------~~g~n~f~~~~~~~~~~ 652 (825)
.-++.+.+...+..+.++|+++|+... .+|. .| ..|.|+|++..+
T Consensus 62 ~~el~~~L~~~~~~l~~~a~~~g~~l~~~G~~P~~~~~~~~~t~~~RY~~m~~~~~~~~~~~~~~g~HVhv~~~d----- 136 (371)
T PRK13515 62 IAEAREELGRLRQRVAQLAAQFGLRIIAAGTHPFADWRRQEITPKERYAQLVEDLQDVARRNLICGLHVHVGIPD----- 136 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEEEeccCCCCCCCccCCCCCchHHHHHHHHHHHHHHhhceeeeEEEeCCCC-----
Confidence 788999999999999999999999874 4444 11 134555553321
Q ss_pred CcHHHHHHHHHHHHHHHHHHhhhCCCCCCccCCCCCC---cCC-cccccccCCCCC------------------------
Q 003372 653 MSSVGEKFMAGVLHHLSSILAFTAPVPNSYDRIQPNT---WSG-AYQCWGKENREA------------------------ 704 (825)
Q Consensus 653 ls~~~~~fiaGil~h~~al~a~~~P~~nSY~Rl~~g~---~ap-~~~~WG~~NR~a------------------------ 704 (825)
.+....++..+.-.+|-+.|+++.++ +..|. |+. ....|+.-+|.-
T Consensus 137 -~e~~~~~~n~~~~~lP~llALsanSP-----f~~G~dtg~~S~R~~~~~~~p~~g~p~~~~~~~~y~~~~~~l~~~g~i 210 (371)
T PRK13515 137 -REDRIDLMNQVRYFLPHLLALSTSSP-----FWGGRDTGLKSYRSAVFDEFPRTGLPPAFPSWAEYQRYVALLVKTGCI 210 (371)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHcCCc-----cccCCCCchhhhHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHhcCCc
Confidence 13456677788888898888886553 11221 111 123344333321
Q ss_pred --------cccccCCCCCCCCCcceEEecCCCCCCChH--HHHHHHHHHHHHHHhc
Q 003372 705 --------PLRTACPPGVKDGVVSNFELKSFDGCANPH--LGLAAIIASGIDGLRR 750 (825)
Q Consensus 705 --------~iRv~~~~~~~~~~~~~~E~R~~d~~aNPY--L~lAailaAgl~Gi~~ 750 (825)
.+|. . ..-.++|+|.+|...+.- +++||++.+-+..+-+
T Consensus 211 ~~~~~~~~~vRp-~------~~~~tiEiRv~D~~p~~~~~~a~aal~~~lv~~l~~ 259 (371)
T PRK13515 211 DDAKKIWWDLRP-S------PRFPTLELRICDVCTRLDDALALAALFQALVRKLYR 259 (371)
T ss_pred CCCCeEEEEecc-C------CCCCCeeEecCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 1221 1 112479999999865555 7778888777777755
No 26
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=97.66 E-value=0.00027 Score=75.58 Aligned_cols=139 Identities=19% Similarity=0.253 Sum_probs=80.4
Q ss_pred HHHHHHHHHhhCCCcEEEeeCCCCCCCCCCCCChhchHHHHhhcCCCCcEEEEeCC-CCchHHHHHHHHHhCCeeeeccc
Q 003372 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHA-SYPFSKEASYLAYVYPQVYLDFG 293 (825)
Q Consensus 215 ~l~~l~e~~~e~glpvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~-g~p~~~e~~~la~~~pNVyld~s 293 (825)
.|...+++|.++++||++|+--. .- .+-.+++....+ .+. ++|+ +.+ ..++..+.. -+.|+.++
T Consensus 115 vf~~ql~lA~~~~~Pv~iH~r~a---------~~-~~~~il~~~~~~-~~~-i~H~fsG~-~~~a~~~l~--~G~~iS~~ 179 (258)
T PRK11449 115 LLDEQLKLAKRYDLPVILHSRRT---------HD-KLAMHLKRHDLP-RTG-VVHGFSGS-LQQAERFVQ--LGYKIGVG 179 (258)
T ss_pred HHHHHHHHHHHhCCCEEEEecCc---------cH-HHHHHHHhcCCC-CCe-EEEcCCCC-HHHHHHHHH--CCCEEEeC
Confidence 45666899999999999998421 11 234455521112 233 5776 222 222223332 36889888
Q ss_pred cccCcccHHHHHHHHHHHHHHCCCCcEEEecCCCCCcchhhhh----HHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHH
Q 003372 294 LAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLG----AKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDI 369 (825)
Q Consensus 294 ~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~----~~~~r~~l~~~l~~~v~~g~l~~~~a~~~~~~I 369 (825)
+++.+.. ...+++++...|.+|||+.||++..|...+.+ ..+..+++. .+.+. -.++. +.+.++
T Consensus 180 g~it~~~----~~~~~~~~~~ipldriL~ETD~P~l~p~~~~~~~n~p~~~~~~~~-~ia~l---~~~~~----~el~~~ 247 (258)
T PRK11449 180 GTITYPR----ASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFD-VLCEL---RPEPA----DEIAEV 247 (258)
T ss_pred ccccccC----cHHHHHHHHhCChhhEEEecCCCCCCCCCCCCCCCCChHHHHHHH-HHHHH---HCcCH----HHHHHH
Confidence 8764321 13578888999999999999966543211110 112222221 11221 23443 468889
Q ss_pred HHHhHHHHhcC
Q 003372 370 FALNAAQFYKI 380 (825)
Q Consensus 370 l~~NA~rly~L 380 (825)
+++||.|+|++
T Consensus 248 ~~~N~~~lf~~ 258 (258)
T PRK11449 248 LLNNTYTLFNV 258 (258)
T ss_pred HHHHHHHHhCc
Confidence 99999999985
No 27
>PRK13517 carboxylate-amine ligase; Provisional
Probab=97.61 E-value=0.0017 Score=73.20 Aligned_cols=128 Identities=24% Similarity=0.216 Sum_probs=89.0
Q ss_pred eEEEeeeeEEEEEeecccCCCCCCccCCCCCcCcCCccCCchHHHHHHHHHHHhCCCCeeeeecCCCCCceEEecCcC-h
Q 003372 524 VLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHT-V 602 (825)
Q Consensus 524 ~~~~g~E~EF~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~-~ 602 (825)
.+.+|+|.||+++++. .+ .+. +...++.+.+... -.-..+..|-..+|.||+.+|+ +
T Consensus 10 ~~tiGvE~E~~lVD~~--t~----~~~---------------~~~~~vl~~~~~~-~~~~~i~~El~~~qiEi~t~p~~~ 67 (373)
T PRK13517 10 RPTLGVEWELLLVDPE--TG----ELS---------------PRAAEVLAAAGED-DEGPHLQKELLRNTVEVVTGVCDT 67 (373)
T ss_pred CCeeEeeeeEeeECCC--cC----CcC---------------ccHHHHHHhcccc-cCCCcccccccCCEEEECCCCCCC
Confidence 4699999999999862 11 110 1233444444321 1124678899999999999997 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCeEE---ecccc---------------------------cCCCCcccccCCCCCCCC
Q 003372 603 AAKAADNLIFTREVLRAVARKHGLLAT---FVPNL---------------------------WQNGENVFMASDSSSKHG 652 (825)
Q Consensus 603 ~l~aaD~~~~~r~~i~~iA~~~Gl~At---F~pKl---------------------------~~~g~n~f~~~~~~~~~~ 652 (825)
.-++.+.+...+..++++|+++|+... .+|.. .-.|.+++.+.+.
T Consensus 68 ~~el~~~L~~~~~~l~~~a~~~g~~l~~~G~~P~~~~~~~~~~~~~RY~~m~~~~~~~~~~~~~~g~hVhv~v~~----- 142 (373)
T PRK13517 68 VAEARADLRRTRALARRAAERRGARLAAAGTHPFSDWSEQPVTDKPRYAELIERTQWWARQQLICGVHVHVGVPS----- 142 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEEEeeCCCCCCCCccCCCCCchHHHHHHHHHHHHHHhheeeeeEEEeCCCC-----
Confidence 889999999999999999999997654 44540 0235566664332
Q ss_pred CcHHHHHHHHHHHHHHHHHHhhhCCCC
Q 003372 653 MSSVGEKFMAGVLHHLSSILAFTAPVP 679 (825)
Q Consensus 653 ls~~~~~fiaGil~h~~al~a~~~P~~ 679 (825)
.+..-.++..+...+|-+.|+++.++
T Consensus 143 -~~~~i~~~n~l~~~lP~llALsAnSP 168 (373)
T PRK13517 143 -REKVVPVINRLRPWLPHLLALSANSP 168 (373)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 12345677788899999999997775
No 28
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=97.51 E-value=0.00058 Score=72.41 Aligned_cols=140 Identities=22% Similarity=0.255 Sum_probs=88.3
Q ss_pred HHHHHHHHHhhCCCcEEEeeCCCCCCCCCCCCChhchHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCeeeecccc
Q 003372 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFGL 294 (825)
Q Consensus 215 ~l~~l~e~~~e~glpvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pNVyld~s~ 294 (825)
.|..-+++|.++++||.+|+--.. ..+-++++ +++...=.++|| |.-..+.+.-.... ..|+.+|+
T Consensus 113 ~F~~ql~lA~~~~lPviIH~R~A~----------~d~~~iL~--~~~~~~~gi~Hc-FsGs~e~a~~~~d~-G~yisisG 178 (256)
T COG0084 113 VFEAQLELAKELNLPVIIHTRDAH----------EDTLEILK--EEGAPVGGVLHC-FSGSAEEARKLLDL-GFYISISG 178 (256)
T ss_pred HHHHHHHHHHHcCCCEEEEccccH----------HHHHHHHH--hcCCCCCEEEEc-cCCCHHHHHHHHHc-CeEEEECc
Confidence 455567899999999999985321 12555666 454334455787 22122222222222 39999999
Q ss_pred ccCcccHHHHHHHHHHHHHHCCCCcEEEecCCCCCcchhhhh----HHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHH
Q 003372 295 AIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLG----AKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIF 370 (825)
Q Consensus 295 ~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~----~~~~r~~l~~~l~~~v~~g~l~~~~a~~~~~~Il 370 (825)
++.+-. ...+++++...|.+|+|.-||++..+...+-+ ..+.+. ....++++. .++. +.+..+.
T Consensus 179 ~itfk~----a~~~~ev~~~iPldrLL~ETDsPyl~P~p~rGkrNeP~~v~~-v~~~iAelk---~~~~----eeva~~t 246 (256)
T COG0084 179 IVTFKN----AEKLREVARELPLDRLLLETDAPYLAPVPYRGKRNEPAYVRH-VAEKLAELK---GISA----EEVAEIT 246 (256)
T ss_pred eeecCC----cHHHHHHHHhCCHhHeEeccCCCCCCCcCCCCCCCCchHHHH-HHHHHHHHh---CCCH----HHHHHHH
Confidence 886542 23688899999999999999976643222222 112232 234444432 5565 5788999
Q ss_pred HHhHHHHhcC
Q 003372 371 ALNAAQFYKI 380 (825)
Q Consensus 371 ~~NA~rly~L 380 (825)
..|+.+||++
T Consensus 247 ~~N~~~lf~~ 256 (256)
T COG0084 247 TENAKRLFGL 256 (256)
T ss_pred HHHHHHHhcC
Confidence 9999999985
No 29
>PRK13516 gamma-glutamyl:cysteine ligase; Provisional
Probab=97.41 E-value=0.0021 Score=72.10 Aligned_cols=128 Identities=20% Similarity=0.211 Sum_probs=86.6
Q ss_pred eEEEeeeeEEEEEeecccCCCCCCccCCCCCcCcCCccCCchHHHHHHHHHHHhCCCCeeeeecCCCCCceEEecCcC-h
Q 003372 524 VLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHT-V 602 (825)
Q Consensus 524 ~~~~g~E~EF~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~-~ 602 (825)
.+.+|+|.||+|+++.. + .+. .....++ +.+..... -+.++.|-..+|.||+.+|+ +
T Consensus 11 ~~t~GvE~E~~LVD~~t--~----~~~-----------~~~~~vl----~~~~~~~~-~~~v~~El~~~qIEi~T~p~~~ 68 (373)
T PRK13516 11 PFTLGVELELQLVNPHD--Y----DLT-----------QDSSDLL----RAVKNQPT-AGEIKPEITESMIEIATGVCRD 68 (373)
T ss_pred CCeeEEEEEEEeEcCCC--c----CcC-----------ccHHHHH----Hhcccccc-ccccChhhhCceEEEcCCCCCC
Confidence 35999999999998721 1 110 1122333 33322111 23588899999999999997 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCeEEe---ccc-------cc--------------------CCCCcccccCCCCCCCC
Q 003372 603 AAKAADNLIFTREVLRAVARKHGLLATF---VPN-------LW--------------------QNGENVFMASDSSSKHG 652 (825)
Q Consensus 603 ~l~aaD~~~~~r~~i~~iA~~~Gl~AtF---~pK-------l~--------------------~~g~n~f~~~~~~~~~~ 652 (825)
.-++.+.+...+..++++|+++|+...= +|- ++ -.|.|+|.+...
T Consensus 69 ~~el~~eL~~~r~~l~~~A~~~G~~lva~GthP~~~~~~~~it~~~RY~~l~~~~~~~~~~~~i~G~HVHvg~~d----- 143 (373)
T PRK13516 69 IDQALGQLSAMRDVLVQAADKLNIGICGGGTHPFQQWQRQRICDNPRFQYLSELYGYLAKQFTVFGQHVHIGCPS----- 143 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEEEeecCCCCCCccccCCCCcHHHHHHHHHhhhhhhhheeeeeEEEeCCCC-----
Confidence 8899999999999999999999987542 332 01 025577763311
Q ss_pred CcHHHHHHHHHHHHHHHHHHhhhCCCC
Q 003372 653 MSSVGEKFMAGVLHHLSSILAFTAPVP 679 (825)
Q Consensus 653 ls~~~~~fiaGil~h~~al~a~~~P~~ 679 (825)
.+..-..+-.+..++|.+.|+++.++
T Consensus 144 -~~~av~~~~~l~~~lP~llALsAsSP 169 (373)
T PRK13516 144 -GDDALYLLHGLSRYVPHFIALSASSP 169 (373)
T ss_pred -HHHHHHHHHHHHhHhHHHHHHHhCCc
Confidence 23456667788888899999987763
No 30
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=97.38 E-value=0.00085 Score=71.62 Aligned_cols=138 Identities=25% Similarity=0.332 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhhCCCcEEEeeCCCCCCCCCCCCChhchHHHHhhcCCCCcEEEEeCC-CCchHHHHHHHHHhCCeeeecc
Q 003372 214 YIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHA-SYPFSKEASYLAYVYPQVYLDF 292 (825)
Q Consensus 214 ~~l~~l~e~~~e~glpvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~-g~p~~~e~~~la~~~pNVyld~ 292 (825)
..|...+++|.++++||++|+--. .. .+-+++++-..|+. -++.|+ +.+. .++..+.. .++|+.+
T Consensus 111 ~vF~~ql~lA~~~~~pv~iH~r~a---------~~-~~l~il~~~~~~~~-~~i~H~f~g~~-~~~~~~~~--~g~~~S~ 176 (255)
T PF01026_consen 111 EVFERQLELAKELNLPVSIHCRKA---------HE-ELLEILKEYGPPNL-RVIFHCFSGSP-EEAKKFLD--LGCYFSF 176 (255)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEESH---------HH-HHHHHHHHTTGGTS-EEEETT--S-H-HHHHHHHH--TTEEEEE
T ss_pred HHHHHHHHHHHHhCCcEEEecCCc---------HH-HHHHHHHhccccce-eEEEecCCCCH-HHHHHHHh--cCceEEe
Confidence 356666799999999999998521 12 24445553222344 555776 2222 12222222 2899999
Q ss_pred ccccCcccHHHHHHHHHHHHHHCCCCcEEEecCCCC-Ccc-----hhhhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHH
Q 003372 293 GLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYA-SPE-----TYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVA 366 (825)
Q Consensus 293 s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~-~P~-----~~~~~~~~~r~~l~~~l~~~v~~g~l~~~~a~~~~ 366 (825)
+....... ....++++...|.+|||.-||++. -|. ...+. ...+++ +.+.+ -..++. +.+
T Consensus 177 ~~~~~~~~----~~~~~~~~~~ip~drillETD~P~~~~~~~~~~~~~p~--~i~~~~-~~la~---~~~~~~----e~~ 242 (255)
T PF01026_consen 177 SGAITFKN----SKKVRELIKAIPLDRILLETDAPYLAPDPYRGKPNEPS--NIPKVA-QALAE---IKGISL----EEL 242 (255)
T ss_dssp EGGGGSTT----SHHHHHHHHHS-GGGEEEE-BTTSSECTTSTTSE--GG--GHHHHH-HHHHH---HHTSTH----HHH
T ss_pred cccccccc----cHHHHHHHhcCChhhEEEcCCCCcCCccccCCCCCChH--HHHHHH-HHHHH---HcCCCH----HHH
Confidence 98654321 234677888999999999999643 110 00111 122222 11111 124665 579
Q ss_pred HHHHHHhHHHHhc
Q 003372 367 KDIFALNAAQFYK 379 (825)
Q Consensus 367 ~~Il~~NA~rly~ 379 (825)
..+.++|++|+|+
T Consensus 243 ~~~~~~N~~r~f~ 255 (255)
T PF01026_consen 243 AQIIYENAKRLFG 255 (255)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999996
No 31
>PRK09875 putative hydrolase; Provisional
Probab=97.17 E-value=0.013 Score=63.58 Aligned_cols=147 Identities=15% Similarity=0.086 Sum_probs=82.1
Q ss_pred HHHHHhhCCCcEEEeeCCCCCCCCCCCCChhchHHHHhhcCCCCcEEEEeCCCCchH-HHHHHHHHhCCeeeeccccccC
Q 003372 219 SLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFS-KEASYLAYVYPQVYLDFGLAIP 297 (825)
Q Consensus 219 l~e~~~e~glpvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~-~e~~~la~~~pNVyld~s~~~~ 297 (825)
..+...+.|.||.+|++.+.. ...+-+++++...+--++|+.|+..+.. .....++..=-.|-+|+-+.-.
T Consensus 144 aa~a~~~TG~pi~~Ht~~~~~--------g~e~l~il~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~~G~~l~fD~~g~~~ 215 (292)
T PRK09875 144 AALAHNQTGRPISTHTSFSTM--------GLEQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGKNS 215 (292)
T ss_pred HHHHHHHHCCcEEEcCCCccc--------hHHHHHHHHHcCcCcceEEEeCCCCCCCHHHHHHHHHcCCEEEeccCCCcc
Confidence 345567899999999987531 2222345554345556999999953322 2223344322234444322211
Q ss_pred cccHHHHHHHHHHHHHHCCCCcEEEecCCCCC-cchhhhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhHHH
Q 003372 298 KLSVQGMISSIKELLELAPTKKVMFSTDAYAS-PETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQ 376 (825)
Q Consensus 298 ~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~-P~~~~~~~~~~r~~l~~~l~~~v~~g~l~~~~a~~~~~~Il~~NA~r 376 (825)
.++.......+..+++.+=.+|||.|+|...- +...|.+ .-+..++.+++..+.+.| ++. +.+++|+.+|++|
T Consensus 216 ~~pd~~r~~~i~~L~~~Gy~drilLS~D~~~~~~~~~~gg-~G~~~i~~~~ip~L~~~G-vse----~~I~~m~~~NP~r 289 (292)
T PRK09875 216 YYPDEKRIAMLHALRDRGLLNRVMLSMDITRRSHLKANGG-YGYDYLLTTFIPQLRQSG-FSQ----ADVDVMLRENPSQ 289 (292)
T ss_pred cCCHHHHHHHHHHHHhcCCCCeEEEeCCCCCcccccccCC-CChhHHHHHHHHHHHHcC-CCH----HHHHHHHHHCHHH
Confidence 11112334566766666657999999994211 1111111 112334445555555554 663 6899999999999
Q ss_pred Hhc
Q 003372 377 FYK 379 (825)
Q Consensus 377 ly~ 379 (825)
+|.
T Consensus 290 ~~~ 292 (292)
T PRK09875 290 FFQ 292 (292)
T ss_pred HhC
Confidence 984
No 32
>PRK10425 DNase TatD; Provisional
Probab=97.07 E-value=0.0029 Score=67.67 Aligned_cols=141 Identities=18% Similarity=0.223 Sum_probs=81.2
Q ss_pred HHHHHHHHHhhCCCcEEEeeCCCCCCCCCCCCChhchHHHHhhcCCCCcEEEEeCC-CCchHHHHHHHHHhCCeeeeccc
Q 003372 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHA-SYPFSKEASYLAYVYPQVYLDFG 293 (825)
Q Consensus 215 ~l~~l~e~~~e~glpvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~-g~p~~~e~~~la~~~pNVyld~s 293 (825)
.|...+++|.++++||.+|+--. . ..+-++++. ..|+.+=++.|+ +.+. .++..+.. .+.|+.++
T Consensus 109 vF~~ql~lA~~~~~Pv~iH~r~a---------~-~~~l~iL~~-~~~~~~~~i~H~fsG~~-~~~~~~l~--~G~~~si~ 174 (258)
T PRK10425 109 AFVAQLAIAAELNMPVFMHCRDA---------H-ERFMALLEP-WLDKLPGAVLHCFTGTR-EEMQACLA--RGLYIGIT 174 (258)
T ss_pred HHHHHHHHHHHhCCCeEEEEeCc---------h-HHHHHHHHH-hccCCCCeEEEecCCCH-HHHHHHHH--CCCEEEEC
Confidence 45556789999999999998421 1 123345552 123332134698 2121 22222222 37999988
Q ss_pred cccCcccHHHHHHHHHHHHHHCCCCcEEEecCCCCC-cchhh-------hhHHHHHHHHHHHHHhhhcCCCCChHHHHHH
Q 003372 294 LAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYAS-PETYF-------LGAKRAREVVFSVLRDTCIDEDLSVGEAIEV 365 (825)
Q Consensus 294 ~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~-P~~~~-------~~~~~~r~~l~~~l~~~v~~g~l~~~~a~~~ 365 (825)
+.+... +.+ ..++++++..|.+|+|.-||+++. |..+. ....+...++ ..+++ --.++. +.
T Consensus 175 g~i~~~-~~~--~~~~~~~~~ipldrlLlETDaP~l~P~~~~~~~~~~~n~P~~i~~v~-~~iA~---l~~~~~----~~ 243 (258)
T PRK10425 175 GWVCDE-RRG--LELRELLPLIPAERLLLETDAPYLLPRDLTPKPASRRNEPAFLPHIL-QRIAH---WRGEDA----AW 243 (258)
T ss_pred ceeecc-ccc--HHHHHHHHhCChHHEEEeccCCCCCCCCcCCCCCCCCCCcHHHHHHH-HHHHH---HHCcCH----HH
Confidence 865321 111 367888899999999999998653 31110 0011222222 22222 134564 56
Q ss_pred HHHHHHHhHHHHhcC
Q 003372 366 AKDIFALNAAQFYKI 380 (825)
Q Consensus 366 ~~~Il~~NA~rly~L 380 (825)
+..+.+.|+.++|++
T Consensus 244 v~~~~~~N~~~lf~~ 258 (258)
T PRK10425 244 LAATTDANARTLFGL 258 (258)
T ss_pred HHHHHHHHHHHHhCc
Confidence 888999999999985
No 33
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=97.04 E-value=0.006 Score=67.79 Aligned_cols=156 Identities=18% Similarity=0.190 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHhhCCCcEEEeeCCCCCCCCC---CCCChhchHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCC-ee
Q 003372 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDL---RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYP-QV 288 (825)
Q Consensus 213 d~~l~~l~e~~~e~glpvq~H~G~gd~~~~~---~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~p-NV 288 (825)
+..++++++.|+++|+||.+|++..+..... .......+..+++ +||+++|++.|.+.+ +...++.... ||
T Consensus 112 ~~~l~~~~e~~~~~g~~V~vHaE~~~l~~~~~~~e~~~~~~~~~lA~--~~p~~~v~i~Hvst~---~~~~~i~~ak~~v 186 (335)
T cd01294 112 LEKIYPVLEAMQKLGMPLLVHGEVPDFKIDVLDREAKFIPVLEPLAQ--RFPKLKIVLEHITTA---DAVEYVKSCNENV 186 (335)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCCCcccccchhhHHHHHHHHHHHHH--HcCCCeEEEecccHH---HHHHHHHhCCCCc
Confidence 3578999999999999999999853210000 0001125677777 799999999999854 4455555555 79
Q ss_pred eecccccc--------------------Ccc-cHHHHHHHHHHHHHHCCCCcEEEecCCCCCcch-----hhh-hHHHHH
Q 003372 289 YLDFGLAI--------------------PKL-SVQGMISSIKELLELAPTKKVMFSTDAYASPET-----YFL-GAKRAR 341 (825)
Q Consensus 289 yld~s~~~--------------------~~~-~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~-----~~~-~~~~~r 341 (825)
+.+++... |-. +... +..|-+.+. -|.-.++++||--++... ++. +....-
T Consensus 187 t~Et~ph~L~l~~~~~~~~~~g~~~k~~PPlR~~~d-~~~L~~~l~-~G~id~~i~SDHaP~~~~~K~~~~g~~Gi~~~~ 264 (335)
T cd01294 187 AATITPHHLLLTRDDLLGGGLNPHLYCKPVAKRPED-REALRKAAT-SGHPKFFLGSDSAPHPKSNKESSCGCAGIFSAP 264 (335)
T ss_pred EEEEchhHheeeHHHhcCCCCCCCeEEcCCCCCHHH-HHHHHHHHH-cCCCCeEEECCCCCCCCccccCCCCCccccCHH
Confidence 88765321 100 1111 122323332 233444689995433210 011 111111
Q ss_pred HHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhHHHHhcCC
Q 003372 342 EVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (825)
Q Consensus 342 ~~l~~~l~~~v~~g~l~~~~a~~~~~~Il~~NA~rly~L~ 381 (825)
..+.-++ +.++ +.++. +.+-.++..|++|+|||.
T Consensus 265 ~~l~~~~-~~~~-~~l~l----~~~v~~~s~nPA~i~gl~ 298 (335)
T cd01294 265 IALPYLA-EVFE-EHNAL----DKLEAFASDNGPNFYGLP 298 (335)
T ss_pred HHHHHHH-HHHh-ccCCH----HHHHHHHHhHHHHHhCCC
Confidence 1232233 3343 48887 457788899999999984
No 34
>COG2170 Uncharacterized conserved protein [Function unknown]
Probab=96.82 E-value=0.01 Score=64.24 Aligned_cols=151 Identities=24% Similarity=0.265 Sum_probs=101.5
Q ss_pred cCCCCCceEEecCcCh-HHHHHHHHHHHHHHHHHHHHHCCCeEEe---ccc----------------------ccC----
Q 003372 587 AEAGKGQFEIALGHTV-AAKAADNLIFTREVLRAVARKHGLLATF---VPN----------------------LWQ---- 636 (825)
Q Consensus 587 ~E~~pGQ~Ei~l~~~~-~l~aaD~~~~~r~~i~~iA~~~Gl~AtF---~pK----------------------l~~---- 636 (825)
+|.--.+-|+..+.++ .-+|+-.+-..|..++++|..|||+..= +|- .|.
T Consensus 43 ~e~~e~~vE~~t~vc~~~~eA~~~~r~~r~~l~q~a~d~gL~~~~~GtHPfadw~~~~~~~~prY~~~ie~~~y~~~q~~ 122 (369)
T COG2170 43 HEITESTVELATGVCRLLAEAAAQLRALRDYLVQAASDHGLRICGGGTHPFADWRRQEVPDNPRYQRLIERTGYLGRQMT 122 (369)
T ss_pred HHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHhhhcCceecccCCCchhhhhhccCCCChhHHHHHHHhhhHHhhee
Confidence 6666667888888874 4578888888999999999999998753 232 011
Q ss_pred -CCCcccccCCCCCCCCCcHHHHHHHHHHHHHHHHHHhhhCCCC---------CCccCCCCCCc-----CCcccccc---
Q 003372 637 -NGENVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVP---------NSYDRIQPNTW-----SGAYQCWG--- 698 (825)
Q Consensus 637 -~g~n~f~~~~~~~~~~ls~~~~~fiaGil~h~~al~a~~~P~~---------nSY~Rl~~g~~-----ap~~~~WG--- 698 (825)
-|.|||.++++ ++..-..+-+|+.++|-+.|+++.++ .|+++-.-..| .|..-+|+
T Consensus 123 v~G~HVHVGi~~------~d~~~~~l~~l~~~~PhlLALSASSPf~~G~dTGyAS~R~~if~~~P~~g~pp~f~sw~~f~ 196 (369)
T COG2170 123 VAGQHVHVGIPS------PDDAMYLLHRLLRYVPHLLALSASSPFWQGTDTGYASARANIFSQLPTNGLPPAFQSWAAFE 196 (369)
T ss_pred eeeEEEEecCCC------HHHHHHHHHHHHhhhhHHHhhhcCCccccCccchhhhhhHhhhhhCCcCCCCccccCHHHHH
Confidence 37788876543 34567888999999999999998875 34444331111 12234554
Q ss_pred -----------cCCCC---CcccccCCCCCCCCCcceEEecCCCCCCChH--HHHHHHHHHHHHHHhc
Q 003372 699 -----------KENRE---APLRTACPPGVKDGVVSNFELKSFDGCANPH--LGLAAIIASGIDGLRR 750 (825)
Q Consensus 699 -----------~~NR~---a~iRv~~~~~~~~~~~~~~E~R~~d~~aNPY--L~lAailaAgl~Gi~~ 750 (825)
.+|.. -.|| |+ +.-.++|+|.+|...||= ++++|++.|-+.-+-.
T Consensus 197 ~~~~~~~~tG~I~~~~~lwwdIR-Ps------ph~gTlEvRi~D~~~~l~~~~aivaL~~Alv~~ll~ 257 (369)
T COG2170 197 AFFRDQLETGTIDSMGDLWWDIR-PS------PHLGTLEVRICDTVLNLAELLAIVALIHALVVWLLR 257 (369)
T ss_pred HHHHHHHHhcccccccceEEecc-cC------CCCCceEEEecCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 13222 1344 33 223589999999999984 6777888887655555
No 35
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=96.65 E-value=0.13 Score=52.58 Aligned_cols=143 Identities=20% Similarity=0.282 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHHhhCCCcEEEeeCCCCCCCCCCCCChhchHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCeeeec
Q 003372 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLD 291 (825)
Q Consensus 212 ~d~~l~~l~e~~~e~glpvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pNVyld 291 (825)
....|..-+++|.++++|+.+||--++. .-..+..|+ ++.+..++.-.+|+-|...-.+. .+.. .-+|++
T Consensus 112 E~evf~~QL~LA~e~dvPviVHTPr~nK----~e~t~~ild-i~~~~~l~~~lvvIDH~N~etv~---~vld--~e~~vG 181 (254)
T COG1099 112 EKEVFREQLELARELDVPVIVHTPRRNK----KEATSKILD-ILIESGLKPSLVVIDHVNEETVD---EVLD--EEFYVG 181 (254)
T ss_pred HHHHHHHHHHHHHHcCCcEEEeCCCCcc----hhHHHHHHH-HHHHcCCChhheehhcccHHHHH---HHHh--ccceEE
Confidence 4446677789999999999999975421 112233444 44434677777888998432221 1221 235555
Q ss_pred cccccCcccHHHHHHHHHHHHHHCCCCcEEEecCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHH
Q 003372 292 FGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFA 371 (825)
Q Consensus 292 ~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~r~~l~~~l~~~v~~g~l~~~~a~~~~~~Il~ 371 (825)
+.-......... .-+++...+.+|||..||+-+-+.-.+. ..|-.+ + ++...+.. +.++++++
T Consensus 182 lTvqPgKlt~~e----AveIV~ey~~~r~ilnSD~~s~~sd~la---vprtal-----~-m~~~gv~~----~~i~kV~~ 244 (254)
T COG1099 182 LTVQPGKLTVEE----AVEIVREYGAERIILNSDAGSAASDPLA---VPRTAL-----E-MEERGVGE----EEIEKVVR 244 (254)
T ss_pred EEecCCcCCHHH----HHHHHHHhCcceEEEecccccccccchh---hhHHHH-----H-HHHhcCCH----HHHHHHHH
Confidence 543221222222 2334445668999999997654432111 112222 1 12224553 68999999
Q ss_pred HhHHHHhcCC
Q 003372 372 LNAAQFYKIN 381 (825)
Q Consensus 372 ~NA~rly~L~ 381 (825)
+||.++|++.
T Consensus 245 ~NA~~~~~l~ 254 (254)
T COG1099 245 ENALSFYGLS 254 (254)
T ss_pred HHHHHHhCcC
Confidence 9999999974
No 36
>PRK05451 dihydroorotase; Provisional
Probab=96.52 E-value=0.038 Score=61.75 Aligned_cols=79 Identities=22% Similarity=0.195 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHHhhCCCcEEEeeCCCCCCCCCCCCChh-----chHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCC
Q 003372 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPL-----HLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYP 286 (825)
Q Consensus 212 ~d~~l~~l~e~~~e~glpvq~H~G~gd~~~~~~~~~P~-----~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~p 286 (825)
+|..++++++.|+++|+||.+|++..+...+ ....+. .+..+++ +||+++++++|.+.+...+.+.-+ ..
T Consensus 116 dd~~l~~~~e~~~~~g~~V~vHaE~~~~~~~-~~~~e~~~~~~~l~~lA~--~~pg~~lhI~Hlst~~~~e~i~~a--~~ 190 (345)
T PRK05451 116 DIEKIYPVLEAMQKLGMPLLVHGEVTDPDID-IFDREAVFIDRVLEPLRR--RFPKLKIVFEHITTKDAVDYVREA--ND 190 (345)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCCCcccc-cccchHHHHHHHHHHHHH--hcCCCcEEEEecCcHHHHHHHHhc--CC
Confidence 5668899999999999999999986322111 111122 3566887 899999999999876554443322 45
Q ss_pred eeeeccccc
Q 003372 287 QVYLDFGLA 295 (825)
Q Consensus 287 NVyld~s~~ 295 (825)
||+++++..
T Consensus 191 ~it~Et~ph 199 (345)
T PRK05451 191 NLAATITPH 199 (345)
T ss_pred CEEEEecHH
Confidence 888887654
No 37
>PLN02599 dihydroorotase
Probab=96.11 E-value=0.081 Score=59.40 Aligned_cols=159 Identities=14% Similarity=0.119 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHhhCCCcEEEeeCCCCCCCCCCCCChhch----HHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCee
Q 003372 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHL----RAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQV 288 (825)
Q Consensus 213 d~~l~~l~e~~~e~glpvq~H~G~gd~~~~~~~~~P~~L----~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pNV 288 (825)
+..++++++.++++|+|+.+|....+...+.......++ ..++. +||+++|++.|.+.+-..++..-+..- ||
T Consensus 135 ~~~l~~~le~~~e~G~~L~vH~E~~~~~~~~~~~E~~~i~r~l~~~la--~~~g~kI~i~HiSt~~~ve~v~~ak~~-~v 211 (364)
T PLN02599 135 LGKCLPVLEEMAEQGMPLLVHGEVTDPSVDIFDREKVFIDTILAPLVQ--KLPQLKIVMEHITTMDAVEFVESCGDG-NV 211 (364)
T ss_pred HHHHHHHHHHHHhcCCEEEEecCCCcccccccccHHHHHHHHHHHHHH--hccCCeEEEEecChHHHHHHHHhccCC-CE
Confidence 468999999999999999999986322111111111223 32455 799999999999765443333322211 78
Q ss_pred eeccccccCcc---------------------cHHHHHHHHHHHHHHCCCCcEEEecCCCCCcchhhh------hHHHHH
Q 003372 289 YLDFGLAIPKL---------------------SVQGMISSIKELLELAPTKKVMFSTDAYASPETYFL------GAKRAR 341 (825)
Q Consensus 289 yld~s~~~~~~---------------------~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~------~~~~~r 341 (825)
+.+++...-.. ++.. +..|.+.+. -|.-+.++|||.-+++..... +....-
T Consensus 212 tae~tpHhL~l~~~~~~~~~~~~~~k~~PPlR~~~d-r~aL~~al~-~G~i~~~i~SDHaPh~~~~K~~~~g~~Gi~~~~ 289 (364)
T PLN02599 212 AATVTPQHLLLNRNALFQGGLQPHNYCLPVLKREIH-REALVKAAT-SGSKKFFLGTDSAPHPKRAKEASCGCAGIYSAP 289 (364)
T ss_pred EEEecHHHHhcCHHHHhccCCCCCeEEECCCCCHHH-HHHHHHHHH-cCCCCEEEecCCCCCChHHhcCCCCCCCcccHH
Confidence 77765421100 0111 122222222 121245799997665432111 110000
Q ss_pred HHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhHHHHhcCCC
Q 003372 342 EVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKINL 382 (825)
Q Consensus 342 ~~l~~~l~~~v~~g~l~~~~a~~~~~~Il~~NA~rly~L~~ 382 (825)
-.+. ++...+.++. ++ +...+++..|.+++|||+.
T Consensus 290 ~~l~-~l~~~~~~~g-~l----~~l~~~~S~npA~~~gL~~ 324 (364)
T PLN02599 290 VALS-LYAKAFEEAG-AL----DKLEAFTSFNGPDFYGLPR 324 (364)
T ss_pred HHHH-HHHHHHHhcC-CH----HHHHHHHhHHHHHHhCCCC
Confidence 0122 2333333222 54 4678889999999999953
No 38
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=96.09 E-value=0.037 Score=60.57 Aligned_cols=151 Identities=20% Similarity=0.128 Sum_probs=82.6
Q ss_pred HHHHHHHHhhCCCcEEEeeCCCCCCCCCCCCChhchHHHHhhcCCCCcEEEEeCCC-CchHHHHHHHHHhCCeeeeccc-
Q 003372 216 FISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHAS-YPFSKEASYLAYVYPQVYLDFG- 293 (825)
Q Consensus 216 l~~l~e~~~e~glpvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g-~p~~~e~~~la~~~pNVyld~s- 293 (825)
+.-...+..+.|.||.+|++.|. ..++...+++.+..-+--+||+.|+. .+.......++..=-+|-+|.-
T Consensus 144 lrAaa~A~~~TG~pI~~H~~~g~-------~~~~e~~~il~e~Gv~~~rvvigH~D~~~D~~y~~~la~~G~~l~~D~~g 216 (308)
T PF02126_consen 144 LRAAARAHKETGAPISTHTGRGT-------RMGLEQLDILEEEGVDPSRVVIGHMDRNPDLDYHRELADRGVYLEFDTIG 216 (308)
T ss_dssp HHHHHHHHHHHT-EEEEEESTTG-------TCHHHHHHHHHHTT--GGGEEETSGGGST-HHHHHHHHHTT-EEEETTTT
T ss_pred HHHHHHHHHHhCCeEEEcCCCCC-------cCHHHHHHHHHHcCCChhHeEEeCCCCCCCHHHHHHHHhcCCEEEecCCc
Confidence 33345666788999999999762 13554444555445677899999984 2222223445543335666654
Q ss_pred ----cccC----cccHHH-HHHHHHHHHHHCCCCcEEEecCCCC-CcchhhhhHHHH-HHHHHHHHHhhhcCCCCChHHH
Q 003372 294 ----LAIP----KLSVQG-MISSIKELLELAPTKKVMFSTDAYA-SPETYFLGAKRA-REVVFSVLRDTCIDEDLSVGEA 362 (825)
Q Consensus 294 ----~~~~----~~~~~g-~~~~l~~~le~~~~~kilfgSD~~~-~P~~~~~~~~~~-r~~l~~~l~~~v~~g~l~~~~a 362 (825)
++.. .+.++. -...+..+++.+=.+|||.|.|... +....+.+.-+. .-++.+++..+.+. .++.
T Consensus 217 ~~~~g~~~~~~~~~~~d~~ri~~l~~L~~~Gy~~qIlLS~D~~~k~~~~~~gg~g~~~~~i~~~fiP~L~~~-Gv~~--- 292 (308)
T PF02126_consen 217 REFSGKDKNPRVGYPPDEERIELLKELIEEGYADQILLSHDIGRKSRLYRYGGGGYGYIYILTRFIPRLKER-GVSE--- 292 (308)
T ss_dssp -B-TTTTTCHSCTTS-HHHHHHHHHHHHHTTTGGGEEE-HHHESEEGSSSCCHHHHTTTHHHHTHHHHHHHT-TS-H---
T ss_pred ccccCcccCccCCCCCHHHHHHHHHHHHHcCCcCcEEEeccccccccccccCCCCccHHHHHHHHHHHHHHc-CCCH---
Confidence 2110 011222 2347788888888899999999543 111111122121 11334444444444 4664
Q ss_pred HHHHHHHHHHhHHHHh
Q 003372 363 IEVAKDIFALNAAQFY 378 (825)
Q Consensus 363 ~~~~~~Il~~NA~rly 378 (825)
+.+++|+-+|.+|+|
T Consensus 293 -~~i~~ilv~NP~r~l 307 (308)
T PF02126_consen 293 -EDIDKILVENPARIL 307 (308)
T ss_dssp -HHHHHHHTHHHHHHH
T ss_pred -HHHHHHHHHCHHHHc
Confidence 578999999999998
No 39
>PRK13518 carboxylate-amine ligase; Provisional
Probab=95.94 E-value=0.056 Score=60.25 Aligned_cols=126 Identities=22% Similarity=0.230 Sum_probs=84.5
Q ss_pred EEeeeeEEEEEeecccCCCCCCccCCCCCcCcCCccCCchHHHHHHHHHHHhCCCCeeeeecCCCCCceEEecCcC-hHH
Q 003372 526 NAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHT-VAA 604 (825)
Q Consensus 526 ~~g~E~EF~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~-~~l 604 (825)
.+|.|.||.|.++. +. +. . ...++++..+..... -+.+++|-..+|.||+.+++ +.-
T Consensus 14 TlGvEeE~~lvD~~---~~----~~-----------~---~~~~~vl~~~~~~~~-~~~~~~El~~~qvEi~T~~~~~~~ 71 (357)
T PRK13518 14 TLGIEEEFFVVDEY---GR----PT-----------S---GTDELVYEHEPPEIL-AGRLDHELFKFVIETQTPLIEDPS 71 (357)
T ss_pred ceEEEEEEEEECCC---CC----cc-----------c---chhHHHHHhcccccC-CCcccccccCceEEEcCcCcCCHH
Confidence 89999999999872 10 10 0 111334443333111 24689999999999999997 889
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCeEE---eccc----------------c------c-----CCCCcccccCCCCCCCCCc
Q 003372 605 KAADNLIFTREVLRAVARKHGLLAT---FVPN----------------L------W-----QNGENVFMASDSSSKHGMS 654 (825)
Q Consensus 605 ~aaD~~~~~r~~i~~iA~~~Gl~At---F~pK----------------l------~-----~~g~n~f~~~~~~~~~~ls 654 (825)
++.+++...|..+..+|.++|+... ++|+ + + -.|.|||.+.+. .
T Consensus 72 el~~~L~~~r~~l~~aa~~~g~~l~a~GthP~~~~~~~~~t~~~RY~~m~~~~~~~~~~~~~~G~HVHVg~~d------~ 145 (357)
T PRK13518 72 EAGAALREVRDALVDHAAAHGYRIAAAGLHPAAKWRELEHAEKPRYRSQLDRIQYPQHRNTTAGLHVHVGVDD------A 145 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEecCCCCCCCccccCCCCCcHHHHHHHhcccchhcceeeEEEEEeCCCC------H
Confidence 9999999999999999999999643 3443 0 1 124556653321 2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCC
Q 003372 655 SVGEKFMAGVLHHLSSILAFTAPVP 679 (825)
Q Consensus 655 ~~~~~fiaGil~h~~al~a~~~P~~ 679 (825)
+..-..+-.+.-.+|-++|+++.++
T Consensus 146 d~av~v~n~lr~~LP~LlALsAnSP 170 (357)
T PRK13518 146 DKAVWIANELRWHLPILLALSANSP 170 (357)
T ss_pred HHHHHHHHHHHhHHHHHHHHHcCCc
Confidence 2233445667788899999987663
No 40
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism]
Probab=95.48 E-value=0.0031 Score=68.11 Aligned_cols=86 Identities=17% Similarity=0.197 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHhhhCCC--CCCccCCCCCCcCC--cccccccCCCCCcccccCCCCCCCCCcceEEecCCCCCCChH
Q 003372 659 KFMAGVLHHLSSILAFTAPV--PNSYDRIQPNTWSG--AYQCWGKENREAPLRTACPPGVKDGVVSNFELKSFDGCANPH 734 (825)
Q Consensus 659 ~fiaGil~h~~al~a~~~P~--~nSY~Rl~~g~~ap--~~~~WG~~NR~a~iRv~~~~~~~~~~~~~~E~R~~d~~aNPY 734 (825)
..+.++=+.-+...+..-|. ...-+||..-++.+ ...+||.-||.+.||||. .........+|.|.||+++.||
T Consensus 279 ~a~~~ls~rh~~hi~~ydp~~G~dN~rrltg~hEt~~i~~Fs~GvAnr~~siri~r--~va~~~~Gy~edrrP~sN~Dpy 356 (380)
T KOG0683|consen 279 EAIPKLSKRHREHIAAYDPKGGKDNERRLTGRHETGSIDNFSWGVANRNPSIRIPR--TVAAEGKGYFEDRRPSSNCDPY 356 (380)
T ss_pred HHhhhcchhhhhhhhhcCccCCccchhhhcCCCccccccccccccccCCceeeech--hhhcccccccccCCCcCCCCcc
Confidence 44444443333333444343 44458887666777 369999999999999997 3333456799999999999999
Q ss_pred HHHHHHHHHHHH
Q 003372 735 LGLAAIIASGID 746 (825)
Q Consensus 735 L~lAailaAgl~ 746 (825)
+|..+++-..|.
T Consensus 357 ~Vt~~~~~t~l~ 368 (380)
T KOG0683|consen 357 AVTLMIIPTTLL 368 (380)
T ss_pred eeeHHHhhHHHh
Confidence 999999877763
No 41
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=95.20 E-value=0.13 Score=54.06 Aligned_cols=104 Identities=27% Similarity=0.194 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHHhhCCCcEEEeeCCCCCCCCCCCCChhchHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCeeeec
Q 003372 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLD 291 (825)
Q Consensus 212 ~d~~l~~l~e~~~e~glpvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pNVyld 291 (825)
.+..+.++++.+.++|+|+.+|++.+... ...+..+++... ++.++++.|++...... ....... +++++
T Consensus 131 ~~~~~~~~~~~a~~~~~~i~~H~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~H~~~~~~~~-~~~~~~~-g~~~~ 200 (275)
T cd01292 131 SDESLRRVLEEARKLGLPVVIHAGELPDP-------TRALEDLVALLR-LGGRVVIGHVSHLDPEL-LELLKEA-GVSLE 200 (275)
T ss_pred CcHHHHHHHHHHHHcCCeEEEeeCCcccC-------ccCHHHHHHHHh-cCCCEEEECCccCCHHH-HHHHHHc-CCeEE
Confidence 44567888999999999999999865211 112334444211 26799999997643332 3333333 88888
Q ss_pred cccccCccc---HHHHHHHHHHHHHHCCCCcEEEecCCCC
Q 003372 292 FGLAIPKLS---VQGMISSIKELLELAPTKKVMFSTDAYA 328 (825)
Q Consensus 292 ~s~~~~~~~---~~g~~~~l~~~le~~~~~kilfgSD~~~ 328 (825)
++...+... ..+ ...++.+++.+ .++++|||+..
T Consensus 201 ~~~~~~~~~~~~~~~-~~~~~~~~~~g--~~~~lgTD~~~ 237 (275)
T cd01292 201 VCPLSNYLLGRDGEG-AEALRRLLELG--IRVTLGTDGPP 237 (275)
T ss_pred ECCcccccccCCcCC-cccHHHHHHCC--CcEEEecCCCC
Confidence 776543221 111 23456666654 79999999543
No 42
>KOG3020 consensus TatD-related DNase [Replication, recombination and repair]
Probab=94.53 E-value=0.79 Score=49.52 Aligned_cols=95 Identities=27% Similarity=0.374 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhCCCcEEEeeCCCCCCCCCCCCChhchHHHHhhcCCCCcE-EEEeCCCCchHHHHHHHHHhCCeeeeccc
Q 003372 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCR-FVLLHASYPFSKEASYLAYVYPQVYLDFG 293 (825)
Q Consensus 215 ~l~~l~e~~~e~glpvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~-ivl~H~g~p~~~e~~~la~~~pNVyld~s 293 (825)
.|..-++++.+..+|+.+|.-.. .- .+-++++. ..|... =+.+|+=.-...++..++... +|+++.
T Consensus 136 vFekQl~LA~~~~~Pl~iH~r~a---------~~-d~~eIl~~-~~~~~~~~vvvHsFtGs~e~~~~~lk~~--~yig~~ 202 (296)
T KOG3020|consen 136 VFEKQLDLAKRLKLPLFIHCRSA---------HE-DLLEILKR-FLPECHKKVVVHSFTGSAEEAQKLLKLG--LYIGFT 202 (296)
T ss_pred HHHHHHHHHHHccCCeeeechhh---------hH-HHHHHHHH-hccccCCceEEEeccCCHHHHHHHHHcc--EEeccc
Confidence 34455688889999999997531 11 13334431 113333 456787222334556666555 999999
Q ss_pred cccCcccHHHHHHHHHHHHHHCCCCcEEEecCCCC
Q 003372 294 LAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYA 328 (825)
Q Consensus 294 ~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~ 328 (825)
+++.... .=.++++..|.+|+|--||++.
T Consensus 203 g~~~k~~------e~~~vlr~iP~erlllETDsP~ 231 (296)
T KOG3020|consen 203 GCSLKTE------ENLEVLRSIPLERLLLETDSPY 231 (296)
T ss_pred ceeeech------hhHHHHhhCCHhHeeeccCCcc
Confidence 9886541 2234566899999999999654
No 43
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=94.47 E-value=0.29 Score=51.40 Aligned_cols=138 Identities=22% Similarity=0.264 Sum_probs=80.6
Q ss_pred HHHHHHHHHhhCCCcEEEeeCCCCCCCCCCCCChhchHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCeeeecccc
Q 003372 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFGL 294 (825)
Q Consensus 215 ~l~~l~e~~~e~glpvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pNVyld~s~ 294 (825)
++...+++|.+.|.|||+||-..+. ..-.-+..++++--.-..++|--|+ -|..... .| .+
T Consensus 146 vl~~a~elA~dvdc~vqLHtes~~~------~~~~~i~~~ak~~G~~~~~VVkHha-~p~v~~~-------~~--~G--- 206 (285)
T COG1831 146 VLEYAMELAKDVDCAVQLHTESLDE------ETYEEIAEMAKEAGIKPYRVVKHHA-PPLVLKC-------EE--VG--- 206 (285)
T ss_pred HHHHHHHHhhcCCCcEEEecCCCCh------HHHHHHHHHHHHhCCCcceeEeecC-Cccchhh-------hh--cC---
Confidence 5666789999999999999964321 1122466666643344578888787 4443221 12 11
Q ss_pred ccCcccHHHHHHHHHHHHHHCCCCcEEEecCCCCCcchh-hhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHh
Q 003372 295 AIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETY-FLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALN 373 (825)
Q Consensus 295 ~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~-~~~~~~~r~~l~~~l~~~v~~g~l~~~~a~~~~~~Il~~N 373 (825)
.||.. .+-++.++++++.+ .+||+-|| |-.-. .+++-.--+.+.+-..+.+++|.++. +.+.+|+-+|
T Consensus 207 i~pSV--~asr~~v~~a~~~g--~~FmmETD---yIDDp~RpgavL~PktVPrr~~~i~~~g~~~e----e~vy~i~~E~ 275 (285)
T COG1831 207 IFPSV--PASRKNVEDAAELG--PRFMMETD---YIDDPRRPGAVLGPKTVPRRTREILEKGDLTE----EDVYRIHVEN 275 (285)
T ss_pred cCCcc--cccHHHHHHHHhcC--CceEeecc---cccCcccCCCcCCccchhHHHHHHHHhcCCcH----HHHHHHHHhC
Confidence 22322 12244677777766 69999999 32110 00111111122222334556677775 6899999999
Q ss_pred HHHHhcCCC
Q 003372 374 AAQFYKINL 382 (825)
Q Consensus 374 A~rly~L~~ 382 (825)
..|+|++..
T Consensus 276 pe~VYg~~~ 284 (285)
T COG1831 276 PERVYGIEL 284 (285)
T ss_pred HHHHhCccC
Confidence 999999864
No 44
>KOG2902 consensus Dihydroorotase [Nucleotide transport and metabolism]
Probab=94.26 E-value=0.15 Score=52.42 Aligned_cols=115 Identities=17% Similarity=0.188 Sum_probs=66.3
Q ss_pred HHHHHHHHHhhCCCcEEEeeCCCCCCCC--CCCCChhchHHHHh-hcCCCCcEEEEeCCCCchHHHHHHHHH------h-
Q 003372 215 IFISSLEVAQFLDLPLQIHTGFGDKDLD--LRLSNPLHLRAILE-DKRFSKCRFVLLHASYPFSKEASYLAY------V- 284 (825)
Q Consensus 215 ~l~~l~e~~~e~glpvq~H~G~gd~~~~--~~~~~P~~L~~l~~-~~~~P~l~ivl~H~g~p~~~e~~~la~------~- 284 (825)
-++|+++..+|.|+|+.+|--. ++..| ...+.+.+|-.++. -.|||++|||+-||..-...+...-|. .
T Consensus 118 ~fyPvf~aMqe~nm~LnvHGEv-pps~D~~Vf~aE~~Flptll~LhqrfP~LKivlEHcTt~dAv~~ve~a~~~sVaaTv 196 (344)
T KOG2902|consen 118 KFYPVFEAMQEQNMPLNVHGEV-PPSIDGHVFDAEKIFLPTLLQLHQRFPQLKIVLEHCTTMDAVNFVESAKEGSVAATV 196 (344)
T ss_pred hhhHHHHHHHHcCceEEecCCC-CCccCCceecchhhhHHHHHHHHHhCccceeHHHhcccHHHHHHHHhhcCCceeeEe
Confidence 5789999999999999999655 33333 33445555444433 128999999999995322222221111 0
Q ss_pred -CCeeeeccccccC----cccH----HHHHHHHHHHHHHCCCCcEEEecCCCCCcc
Q 003372 285 -YPQVYLDFGLAIP----KLSV----QGMISSIKELLELAPTKKVMFSTDAYASPE 331 (825)
Q Consensus 285 -~pNVyld~s~~~~----~~~~----~g~~~~l~~~le~~~~~kilfgSD~~~~P~ 331 (825)
-.++|+..--|.. +.-+ +--++.|-.+ ...|--|+.|||||-++|.
T Consensus 197 TahHL~Lt~~dwqg~P~nfCkPVaK~e~dr~AlvkA-atSg~pkFFfGsDSAPHpr 251 (344)
T KOG2902|consen 197 TAHHLLLTRNDWQGQPHNFCKPVAKREIDREALVKA-ATSGSPKFFFGSDSAPHPR 251 (344)
T ss_pred ehheeEEehhhhcCCCcccccccccCcccHHHHHHH-HhcCCCceeecCCCCCCcc
Confidence 1357776655531 1100 0011222222 2356678999999988774
No 45
>PLN02611 glutamate--cysteine ligase
Probab=94.22 E-value=0.14 Score=59.06 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=39.3
Q ss_pred eeecCCCCCceEEecCcC-hHHHHHHHHHHHHHHHHHHHHHCCCeEE
Q 003372 584 QLHAEAGKGQFEIALGHT-VAAKAADNLIFTREVLRAVARKHGLLAT 629 (825)
Q Consensus 584 ~~h~E~~pGQ~Ei~l~~~-~~l~aaD~~~~~r~~i~~iA~~~Gl~At 629 (825)
.+-=|-| ||+|++..|. +.-++++.+...+..++.+|+++|+...
T Consensus 123 ~ITlEPG-gQiElSt~p~~si~e~~~el~~~~~~l~~~a~~~Gl~l~ 168 (482)
T PLN02611 123 SVSLEPG-GQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFL 168 (482)
T ss_pred ceEeccc-ceEEecccCcCCHHHHHHHHHHHHHHHHHHHHHcCCCeE
Confidence 3444766 9999999997 7889999999999999999999999654
No 46
>TIGR02048 gshA_cyano glutamate--cysteine ligase, cyanobacterial, putative. This family consists of proteins believed (see Copley SD, Dhillon JK, 2002) to be the glutamate--cysteine ligases of several cyanobacteria, which are known to make glutathione.
Probab=93.87 E-value=0.3 Score=55.10 Aligned_cols=90 Identities=13% Similarity=0.066 Sum_probs=66.9
Q ss_pred eeecCCCCCceEEecCcC-hHHHHHHHHHHHHHHHHHHHHHCCC-e---EEeccc-----cc----------------C-
Q 003372 584 QLHAEAGKGQFEIALGHT-VAAKAADNLIFTREVLRAVARKHGL-L---ATFVPN-----LW----------------Q- 636 (825)
Q Consensus 584 ~~h~E~~pGQ~Ei~l~~~-~~l~aaD~~~~~r~~i~~iA~~~Gl-~---AtF~pK-----l~----------------~- 636 (825)
.+.+|.-..|.|++.+++ +.-++.+.+...|..+..+|..+|. . +--+|- .| .
T Consensus 31 ~~~~El~~~~IE~~T~~~~~~~el~~~L~~~r~~l~~~a~~~g~~~l~a~gthP~~~~~~~~~~t~~~rY~~~~~~~~~~ 110 (376)
T TIGR02048 31 GFVREPDSRNVEYTTPPLNSYDRLLCGLLRPRRQLRHYLSQLGDYTLIPGSTLSLGGTDRFYRSDPQNPYHTYIEQTYGT 110 (376)
T ss_pred CCccchhhcEEEecCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCCeeeecccCCCCCCCccCcCCCcchHHHHHHHHhhh
Confidence 455688899999999997 7889999999999999999999997 4 222221 11 0
Q ss_pred ----CCCcccccCCCCCCCCCcHHHHHHHHHHHHHHHHHHhhhCCCC
Q 003372 637 ----NGENVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVP 679 (825)
Q Consensus 637 ----~g~n~f~~~~~~~~~~ls~~~~~fiaGil~h~~al~a~~~P~~ 679 (825)
.|.|||.+..+ -+.+-..+..|.-++|-+.|+++.++
T Consensus 111 ~~~i~G~HVHVgv~d------~d~av~v~n~lr~~LP~LlALSAsSP 151 (376)
T TIGR02048 111 QVVTASVHINIGIPD------PEELMRACRLVRMEAPLFLALSASSP 151 (376)
T ss_pred hheeeEEEEEcCCCC------HHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 24566654322 24456778899999999999998775
No 47
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=92.94 E-value=1.7 Score=49.92 Aligned_cols=150 Identities=16% Similarity=-0.039 Sum_probs=83.0
Q ss_pred hhhhHHHHHHHHHHhhCCCcEEEeeCCCCCCCCCCCCChhchHHHHhhcCCCCcEEEEeCCCCchH---------HHHHH
Q 003372 210 SLIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFS---------KEASY 280 (825)
Q Consensus 210 ~l~d~~l~~l~e~~~e~glpvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~---------~e~~~ 280 (825)
...+..+..+++.+.++|.++++|+-..+ .+.-..+..+++-.+..+.++.+.|.+.... .+...
T Consensus 195 ~~~~~~l~~~~~~a~~~g~~v~~H~e~~~------~~e~~av~~~~~~a~~~g~r~~i~H~ss~~~~~~~~~~~~l~~i~ 268 (415)
T cd01297 195 YAGTAELVALARVAARYGGVYQTHVRYEG------DSILEALDELLRLGRETGRPVHISHLKSAGAPNWGKIDRLLALIE 268 (415)
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEEECccc------ccHHHHHHHHHHHHHHhCCCEEEEEEecCCCcccchHHHHHHHHH
Confidence 45667888999999999999999996432 1111123333321123478999999854322 12222
Q ss_pred HHHh-CCeeeeccccccCcccHHHHHHHHHHHHHHCCCCcEEEecCCCCCcchhhhhHHHHHHHHHHHHHhhhcC-CCCC
Q 003372 281 LAYV-YPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCID-EDLS 358 (825)
Q Consensus 281 la~~-~pNVyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~r~~l~~~l~~~v~~-g~l~ 358 (825)
-+.. -.+|+.++...... . ...+..+++. ...+.+||..+++. .+... ...+..++..++.+ +.++
T Consensus 269 ~a~~~G~~v~~e~~p~~~~-~----~~~~~~l~~~---~~~~i~SDh~~~~~-~~~~~---~~~~~~~l~~~~~~~~~~~ 336 (415)
T cd01297 269 AARAEGLQVTADVYPYGAG-S----EDDVRRIMAH---PVVMGGSDGGALGK-PHPRS---YGDFTRVLGHYVRERKLLS 336 (415)
T ss_pred HHHHhCCcEEEEeCCCCCC-c----HHHHHHHHcC---CCceeeeCCCcCCC-CCcch---hCCHHHHHHHHhcccCCCC
Confidence 2222 24788887653221 1 2344555554 46679999655330 01111 11144455555544 3488
Q ss_pred hHHHHHHHHHHHHHhHHHHhcCC
Q 003372 359 VGEAIEVAKDIFALNAAQFYKIN 381 (825)
Q Consensus 359 ~~~a~~~~~~Il~~NA~rly~L~ 381 (825)
.. .+=..+..|++++|++.
T Consensus 337 ~~----~~~~~~t~~pA~~~gl~ 355 (415)
T cd01297 337 LE----EAVRKMTGLPARVFGLA 355 (415)
T ss_pred HH----HHHHHHHHHHHHHhCCC
Confidence 64 34445557888889985
No 48
>TIGR01436 glu_cys_lig_pln glutamate--cysteine ligase, plant type. This model represents one of two highly dissimilar forms of glutamate--cysteine ligase (gamma-glutamylcysteine synthetase), an enzyme of glutathione biosynthesis. The other type is modeled by TIGR01434. This type is found in plants (with a probable transit peptide), root nodule and other bacteria, but not E. coli and closely related species.
Probab=92.90 E-value=0.61 Score=53.67 Aligned_cols=45 Identities=22% Similarity=0.286 Sum_probs=39.0
Q ss_pred eeecCCCCCceEEecCcC-hHHHHHHHHHHHHHHHHHHHHHCCCeEE
Q 003372 584 QLHAEAGKGQFEIALGHT-VAAKAADNLIFTREVLRAVARKHGLLAT 629 (825)
Q Consensus 584 ~~h~E~~pGQ~Ei~l~~~-~~l~aaD~~~~~r~~i~~iA~~~Gl~At 629 (825)
.+-=|-| ||+|++..|. +.-++++.+...+..++.+|+++|+...
T Consensus 80 ~itlEPg-gQlElS~~p~~~i~e~~~~l~~~~~~l~~~a~~~Gl~l~ 125 (446)
T TIGR01436 80 SISLEPG-GQFELSGAPLETIHETCDEINSHLYQVKEVAEEMGIGFL 125 (446)
T ss_pred eEEEcCc-CeEEecccccCCHHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 3444666 9999999997 6889999999999999999999999654
No 49
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=92.82 E-value=2.5 Score=46.21 Aligned_cols=137 Identities=15% Similarity=0.119 Sum_probs=81.2
Q ss_pred HHHHHHhhCCCcEE-EeeCCCCCCCCCCCCChhchHHHHhhcCCCCcEEEEeCCC----CchH-----HHHHHHHHhCC-
Q 003372 218 SSLEVAQFLDLPLQ-IHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHAS----YPFS-----KEASYLAYVYP- 286 (825)
Q Consensus 218 ~l~e~~~e~glpvq-~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g----~p~~-----~e~~~la~~~p- 286 (825)
.+.+.|.++|++|- -|++. --..+++. +++.++|..|+. .+.- +++-.++..=.
T Consensus 153 ~lV~~~N~LgIiiDlSH~s~------------kt~~Dvl~---~s~~PviaSHSN~~al~~h~RNl~D~qlkaI~~~gGv 217 (313)
T COG2355 153 ELVREMNELGIIIDLSHLSD------------KTFWDVLD---LSKAPVVASHSNARALVDHPRNLSDEQLKAIAETGGV 217 (313)
T ss_pred HHHHHHHhcCCEEEecccCC------------ccHHHHHh---ccCCceEEecCCchhccCCCCCCCHHHHHHHHhcCCE
Confidence 34678889999883 35542 22455665 688888888883 1111 12223332211
Q ss_pred ---e---eeeccccccCcccHHHHHHHHHHHHHHCCCCcEEEecCCCCCcch--hhhhHHHHHHHHHHHHHhhhcCCCCC
Q 003372 287 ---Q---VYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPET--YFLGAKRAREVVFSVLRDTCIDEDLS 358 (825)
Q Consensus 287 ---N---Vyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~--~~~~~~~~r~~l~~~l~~~v~~g~l~ 358 (825)
| -|+..+. -+..+.+.+.+.+..+.+.+|++.|-+|||-...+.. .+... .-+-+++.++.+.| ++
T Consensus 218 Igv~~~~~fl~~~~-~~~atldd~v~hI~h~v~~~G~dhVglGsDf~g~~~~p~gled~----~~l~~l~~~L~~~G-~~ 291 (313)
T COG2355 218 IGVNFIPAFLRPGG-AARATLDDLVRHIDHFVELVGIDHVGLGSDFDGGTGPPDGLEDV----GKLPNLTAALIERG-YS 291 (313)
T ss_pred EEEEeehhhccCCC-CCCCCHHHHHHHHHHHHHhcCcceeEecccccCCCCCchhhcCh----hHHHHHHHHHHHcC-CC
Confidence 1 1222111 1222456778899999999999999999994333321 11111 12334455555556 66
Q ss_pred hHHHHHHHHHHHHHhHHHHhc
Q 003372 359 VGEAIEVAKDIFALNAAQFYK 379 (825)
Q Consensus 359 ~~~a~~~~~~Il~~NA~rly~ 379 (825)
. +.+++|+++|..|+++
T Consensus 292 e----~~i~~i~~~N~lRV~~ 308 (313)
T COG2355 292 E----EEIEKIAGENWLRVLK 308 (313)
T ss_pred H----HHHHHHHHHhHHHHHH
Confidence 4 6899999999999985
No 50
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=92.28 E-value=0.54 Score=51.92 Aligned_cols=70 Identities=16% Similarity=0.191 Sum_probs=42.0
Q ss_pred cHHHHHHHHHHHHHHCCCCcEEEecCCCCC---cchhhhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhHHH
Q 003372 300 SVQGMISSIKELLELAPTKKVMFSTDAYAS---PETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQ 376 (825)
Q Consensus 300 ~~~g~~~~l~~~le~~~~~kilfgSD~~~~---P~~~~~~~~~~r~~l~~~l~~~v~~g~l~~~~a~~~~~~Il~~NA~r 376 (825)
+.+.+.+.+..+.+++|.++|-+|||--.. |.. ......+.. +..++.+. .++. +.+++|+++|+.|
T Consensus 247 ~~~~~~~Hi~y~~~l~G~dhVgiGsDfdg~~~~~~g-l~~~~~~~~----l~~~L~~r-G~s~----~~i~kI~g~N~lR 316 (320)
T PF01244_consen 247 SLDDLVDHIDYIVDLVGIDHVGIGSDFDGIDGPPEG-LEDPSDLPN----LTEELLKR-GYSE----EDIEKILGGNFLR 316 (320)
T ss_dssp BHHHHHHHHHHHHHHH-GGGEEEE--BTTTSSHBBT-BSSGGGHHH----HHHHHHHT-TS-H----HHHHHHHTHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCCeEEECcccCCCCCCCCc-cCCHHHHHH----HHHHHHHC-CCCH----HHHHHHHhHhHHH
Confidence 345677889999999999999999993221 221 111222222 23333333 4664 6899999999999
Q ss_pred Hhc
Q 003372 377 FYK 379 (825)
Q Consensus 377 ly~ 379 (825)
+|+
T Consensus 317 v~~ 319 (320)
T PF01244_consen 317 VLR 319 (320)
T ss_dssp HHH
T ss_pred Hhc
Confidence 985
No 51
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=92.26 E-value=2.5 Score=47.07 Aligned_cols=145 Identities=14% Similarity=0.098 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHhhCCCcEEEeeCCCCCCCCCCCCChhchHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhC-Ceeeec
Q 003372 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVY-PQVYLD 291 (825)
Q Consensus 213 d~~l~~l~e~~~e~glpvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~-pNVyld 291 (825)
+..+..+++.+.+.|+|+.+|.. ....+++ .+++++++.|.+.+-..+....++.. -+|+.+
T Consensus 114 ~~~l~~~~~~~~~~g~~v~~H~E--------------r~~~la~---~~g~~l~i~Hiss~~~le~i~~ak~~g~~vt~e 176 (337)
T cd01302 114 DGTLMRTFLEIASRGGPVMVHAE--------------RAAQLAE---EAGANVHIAHVSSGEALELIKFAKNKGVKVTCE 176 (337)
T ss_pred HHHHHHHHHHHHhcCCeEEEeHH--------------HHHHHHH---HhCCcEEEEeCCCHHHHHHHHHHHHCCCcEEEE
Confidence 34566677888888999999987 2444555 47899999999876555555544433 256555
Q ss_pred ccccc------------------CcccHHHHHHHHHHHHHHCCCCcEEEecCCCCCcchh-------h---hhHHHHHHH
Q 003372 292 FGLAI------------------PKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETY-------F---LGAKRAREV 343 (825)
Q Consensus 292 ~s~~~------------------~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~-------~---~~~~~~r~~ 343 (825)
++... |......-+..|.+.++.+-.+ +++||..+++... | .+....-..
T Consensus 177 v~ph~L~l~~~~~~~~~~~~k~~Pplr~~~~~~~L~~~l~~G~id--~i~sDh~p~~~~~k~~~~~~~~a~~G~~g~e~~ 254 (337)
T cd01302 177 VCPHHLFLDESMLRLNGAWGKVNPPLRSKEDREALWEGVKNGKID--TIASDHAPHSKEEKESGKDIWKAPPGFPGLETR 254 (337)
T ss_pred cChhhheeCHHHhhCCCceEEEeCCCCCHHHHHHHHHHHhCCCCC--EEecCCCCCCHHHhccCCCcccCCCCcccHHHH
Confidence 54321 1010011123444444433323 6899965543110 0 010011112
Q ss_pred HHHHHHhhhcCCCCChHHHHHHHHHHHHHhHHHHhcCC
Q 003372 344 VFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (825)
Q Consensus 344 l~~~l~~~v~~g~l~~~~a~~~~~~Il~~NA~rly~L~ 381 (825)
+..++...+ ++.++.. .+-+++..|++++|++.
T Consensus 255 l~~~~~~~~-~~~i~~~----~~~~~~s~~pA~~~gl~ 287 (337)
T cd01302 255 LPILLTEGV-KRGLSLE----TLVEILSENPARIFGLY 287 (337)
T ss_pred HHHHHHHHH-hcCCCHH----HHHHHHHHHHHHHcCCC
Confidence 322333334 3457763 45666778999999985
No 52
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=92.05 E-value=2 Score=47.31 Aligned_cols=68 Identities=13% Similarity=0.071 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHCCCCcEEEecCCCCCcch--hhhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhHHHH
Q 003372 301 VQGMISSIKELLELAPTKKVMFSTDAYASPET--YFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQF 377 (825)
Q Consensus 301 ~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~--~~~~~~~~r~~l~~~l~~~v~~g~l~~~~a~~~~~~Il~~NA~rl 377 (825)
.+.+...+..+.+++|.+.|.+|||--..+.. .+.....+. ++..++++. .++. +.+++|+++|+.|+
T Consensus 240 ~~~~~~hi~~i~~l~G~dhVgiGsDfdg~~~~~~gl~~~~~~~----~l~~~L~~r-G~s~----~~i~~i~g~N~lRv 309 (309)
T cd01301 240 LDDVVRHIDYIVDLIGIDHVGLGSDFDGIGGTPGGLEDVSDLP----NLTAELLER-GYSE----EEIEKIAGGNFLRV 309 (309)
T ss_pred HHHHHHHHHHHHHhcCCCeEEECcccCCCCCCccccCCHHHHH----HHHHHHHHc-CCCH----HHHHHHHhhchhcC
Confidence 45667899999999999999999993222210 011122222 333344443 4664 57999999999874
No 53
>PF04107 GCS2: Glutamate-cysteine ligase family 2(GCS2); InterPro: IPR006336 Also known as gamma-glutamylcysteine synthetase and gamma-ECS (6.3.2.2 from EC). This enzyme catalyses the first and rate limiting step in de novo glutathione biosynthesis. Members of this family are found in archaea, bacteria and plants. May and Leaver [] discuss the possible evolutionary origins of glutamate-cysteine ligase enzymes in different organisms and suggest that it evolved independently in different eukaryotes, from an ancestral bacterial enzyme. They also state that Arabidopsis thaliana (Mouse-ear cress) gamma-glutamylcysteine synthetase is structurally unrelated to mammalian, yeast and Escherichia coli homologues. In plants, there are separate cytosolic and chloroplast forms of the enzyme.; GO: 0004357 glutamate-cysteine ligase activity, 0006750 glutathione biosynthetic process; PDB: 1R8G_A 2GWC_E 2GWD_A 1TT4_B.
Probab=90.82 E-value=0.26 Score=53.59 Aligned_cols=92 Identities=22% Similarity=0.230 Sum_probs=63.0
Q ss_pred eeeeecCCCCCceEEecCcC-hHHHHHHHHHHHHHHHHHHHHHCCCeEE---eccc--------------------c-c-
Q 003372 582 VEQLHAEAGKGQFEIALGHT-VAAKAADNLIFTREVLRAVARKHGLLAT---FVPN--------------------L-W- 635 (825)
Q Consensus 582 ve~~h~E~~pGQ~Ei~l~~~-~~l~aaD~~~~~r~~i~~iA~~~Gl~At---F~pK--------------------l-~- 635 (825)
-..+++|--.+|.||+..|+ +.-++.+.+...+..+..+|+++|+... ++|. + +
T Consensus 34 ~~~~~~E~~~~qvEi~t~p~~~~~el~~~l~~~~~~l~~~a~~~g~~l~~~G~~P~~~~~~~~~~~~~RY~~~~~~~~~~ 113 (288)
T PF04107_consen 34 GGRVVTELPQSQVEISTPPCRSLAELREELRALRRALADAAAELGLRLVAAGTHPFARWRDQPITPKPRYRAMAEYFGRR 113 (288)
T ss_dssp SSEEEEESSTTEEEEE--SBSSHHHHHHHHHHHHHHHHHHHHCTTEEEE--SB-SS--GGGS---S-HHHHCHHHHHGGH
T ss_pred CCceeeccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEecCCCcCCCcccccCCCChhhhHHHHHHhhh
Confidence 45889999999999999997 7889999999999999999999998754 4452 0 0
Q ss_pred --------CCCCcccccCCCCCCCCCcHHHHHHHHHHHHHHHHHHhhhCCC
Q 003372 636 --------QNGENVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPV 678 (825)
Q Consensus 636 --------~~g~n~f~~~~~~~~~~ls~~~~~fiaGil~h~~al~a~~~P~ 678 (825)
..|.+++.+.+.. ++..-..+..+...+|.+.|+++.+
T Consensus 114 g~~~~~~~~~g~hvhV~v~~~-----~e~~v~~~n~~~~~~P~llALsANS 159 (288)
T PF04107_consen 114 GVLARRMMTCGAHVHVGVDDG-----DEAAVRVMNALRPWLPVLLALSANS 159 (288)
T ss_dssp -SGCCSHHBHEEEEEEEESSS-----HHHHHHHHHHHHTTHHHHHHHH--B
T ss_pred hhhhhhhhhcccceEEeCCCc-----cHHHHHHHHHHHHHhHHHHHHHcCC
Confidence 1234444433221 2222356677778889999988765
No 54
>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type. This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes.
Probab=90.40 E-value=0.57 Score=52.29 Aligned_cols=79 Identities=18% Similarity=0.141 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHhhCCCcEEEeeCCCCCCCCC----CCCChhchHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCe
Q 003372 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQ 287 (825)
Q Consensus 212 ~d~~l~~l~e~~~e~glpvq~H~G~gd~~~~~----~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pN 287 (825)
+|..++++++.|+++|+|+.+|++......+. ..+.|..+..+++ ++|++++++.|.+.+-..++..-+ ..+
T Consensus 113 dd~~l~~~~e~~~e~g~~v~vHaEd~~~~i~~~~~e~~a~~~~i~~lA~--~~~~~~~~i~H~st~~~~~~i~~a--~~~ 188 (341)
T TIGR00856 113 DIDAIMPVLEAMEKIGLPLLLHGEVTHGDIDIFDREARFIESVLEPLRQ--RFPALKVVLEHITTKDAIDYVEDG--NNR 188 (341)
T ss_pred CHHHHHHHHHHHHHcCCeEEEeecCCCCCcccccchhhhhHHHHHHHHH--HccCCeEEEEecCcHHHHHHHHHc--CCC
Confidence 44789999999999999999999864211111 2234556667777 799999999999876554443333 224
Q ss_pred eeecccc
Q 003372 288 VYLDFGL 294 (825)
Q Consensus 288 Vyld~s~ 294 (825)
|+.+++.
T Consensus 189 vt~E~~p 195 (341)
T TIGR00856 189 LAATITP 195 (341)
T ss_pred EEEEEcH
Confidence 7766654
No 55
>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=89.56 E-value=10 Score=42.11 Aligned_cols=134 Identities=15% Similarity=0.054 Sum_probs=67.0
Q ss_pred HHHHHHhhCCCcEEEeeCCCCCCCCCCCCChhchHHHHhhcCCCCcEEEEeCCCCch----HH------HHHHHHHhCCe
Q 003372 218 SSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPF----SK------EASYLAYVYPQ 287 (825)
Q Consensus 218 ~l~e~~~e~glpvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~----~~------e~~~la~~~pN 287 (825)
...+++.++|+|+.+|++.+.. ....+..+++ ++ .++.|+-... .. +.+. ...-.+
T Consensus 153 ~~~~~a~~~~~pi~vH~~~~~~-------~~~~~~~~l~----~g--~~~~H~~~g~~~~~~~~~~~~~~~~~-~~~~~G 218 (338)
T cd01307 153 LAKKIAKEADLPLMVHIGSPPP-------ILDEVVPLLR----RG--DVLTHCFNGKPNGIVDEEGEVLPLVR-RARERG 218 (338)
T ss_pred HHHHHHHHcCCCEEEEeCCCCC-------CHHHHHHHhc----CC--CEEEeccCCCCCCCCCCCCcHHHHHH-HHHhCC
Confidence 4467788999999999986532 2223333333 12 3567762211 11 1111 112248
Q ss_pred eeeccc-cccCcccHHHHHHHHHHHHHHCCCCcEEEecCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHH
Q 003372 288 VYLDFG-LAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVA 366 (825)
Q Consensus 288 Vyld~s-~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~r~~l~~~l~~~v~~g~l~~~~a~~~~ 366 (825)
+|+|++ +..... .+....+++.+.... +.+||...--...++.. .+...+ .... ...++. +.+
T Consensus 219 ~~~d~~~G~~~~~-----~~~~~~l~~~G~~~~-~lstD~~~~~~~~~p~~-~l~~~l----~~l~-~~gi~~----ee~ 282 (338)
T cd01307 219 VIFDVGHGTASFS-----FRVARAAIAAGLLPD-TISSDIHGRNRTNGPVY-ALATTL----SKLL-ALGMPL----EEV 282 (338)
T ss_pred EEEEeCCCCCchh-----HHHHHHHHHCCCCCe-eecCCccccCCCCCccc-cHHHHH----HHHH-HcCCCH----HHH
Confidence 999977 321111 123344555433233 47999532000000110 012222 2221 235675 578
Q ss_pred HHHHHHhHHHHhcCC
Q 003372 367 KDIFALNAAQFYKIN 381 (825)
Q Consensus 367 ~~Il~~NA~rly~L~ 381 (825)
.++...|++++|+++
T Consensus 283 ~~~~T~NpA~~lgl~ 297 (338)
T cd01307 283 IEAVTANPARMLGLA 297 (338)
T ss_pred HHHHHHHHHHHcCCC
Confidence 889999999999984
No 56
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=89.50 E-value=6.4 Score=45.48 Aligned_cols=161 Identities=13% Similarity=0.082 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHhhCCCcEEEeeCCCC--------------CCCCC-CCCChhch-----HHHHhhcCCCCcEEEEeCCCC
Q 003372 213 DYIFISSLEVAQFLDLPLQIHTGFGD--------------KDLDL-RLSNPLHL-----RAILEDKRFSKCRFVLLHASY 272 (825)
Q Consensus 213 d~~l~~l~e~~~e~glpvq~H~G~gd--------------~~~~~-~~~~P~~L-----~~l~~~~~~P~l~ivl~H~g~ 272 (825)
+..+..+++.+.++|+++.+|.-... .+... ..+.|... ..++.--++.+.++++.|.+.
T Consensus 161 ~~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~~~~~~~~H~s~ 240 (447)
T cd01314 161 DEELLDVLKRAKELGALVMVHAENGDVIAELQKKLLAQGKTGPEYHALSRPPEVEAEATARAIRLAELAGAPLYIVHVSS 240 (447)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHHHcCCCChHHhhhcCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 33556667788888899988862110 00000 11234321 112221146789999999987
Q ss_pred chHHHHHHHHHhC-CeeeeccccccCcccHHH---------------------HHHHHHHHHHHCCCCcEEEecCCCCCc
Q 003372 273 PFSKEASYLAYVY-PQVYLDFGLAIPKLSVQG---------------------MISSIKELLELAPTKKVMFSTDAYASP 330 (825)
Q Consensus 273 p~~~e~~~la~~~-pNVyld~s~~~~~~~~~g---------------------~~~~l~~~le~~~~~kilfgSD~~~~P 330 (825)
+...+....++.. .+|.++++.......... -+..+.++++.+ -....|||..++.
T Consensus 241 ~~~~~~i~~~k~~g~~v~~~~~ph~l~~~~~~~~~~~~~g~~~~~~pplr~~~~~~~l~~~l~~G--~i~~igsDh~~~~ 318 (447)
T cd01314 241 KEAADEIARARKKGLPVYGETCPQYLLLDDSDYWKDWFEGAKYVCSPPLRPKEDQEALWDGLSSG--TLQTVGSDHCPFN 318 (447)
T ss_pred HHHHHHHHHHHHCCCeEEEecCchhheeCHHHhccccccccceEECCCCCChHHHHHHHHHHhCC--CeeEEECCCCCCC
Confidence 6555544444333 245554443321110000 012233444422 1234899964432
Q ss_pred chhhhhHHHH---------------HHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhHHHHhcCCCC
Q 003372 331 ETYFLGAKRA---------------REVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKINLG 383 (825)
Q Consensus 331 ~~~~~~~~~~---------------r~~l~~~l~~~v~~g~l~~~~a~~~~~~Il~~NA~rly~L~~~ 383 (825)
. ..+.+ --.+..++.+.+..+.++.. .+-+++..|++++|+|...
T Consensus 319 ~----~~k~~~~~~~~~~~~G~~g~e~~l~~l~~~~~~~~~~~~~----~~~~~~t~~pA~~~gl~~~ 378 (447)
T cd01314 319 F----AQKARGKDDFTKIPNGVPGVETRMPLLWSEGVAKGRITLE----KFVELTSTNPAKIFGLYPR 378 (447)
T ss_pred H----HHhhcccCCHhhCCCCCchHhhhHHHHHHHHHHcCCCCHH----HHHHHHhhHHHHHhCCCCC
Confidence 1 11111 12233445555667778874 4556677899999998543
No 57
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=88.69 E-value=9.3 Score=41.36 Aligned_cols=156 Identities=13% Similarity=0.062 Sum_probs=80.9
Q ss_pred hhhhhHHHHHHHHHHhhCCCcEEEeeCCCCCCCCCCCCChhchHHHHhhcCCCCcEEEEeCCC---CchHHHHHHHHHhC
Q 003372 209 KSLIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHAS---YPFSKEASYLAYVY 285 (825)
Q Consensus 209 ~~l~d~~l~~l~e~~~e~glpvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g---~p~~~e~~~la~~~ 285 (825)
.++....+.-..+...+.|.|+..||-.|-. -...++-+.+. --+=-++++.|++ .|+..+ -.++..=
T Consensus 147 Tp~Eek~lrAaA~A~~~Tg~Pi~tHt~~gt~-------g~eq~~il~~e-gvdl~~v~igH~d~n~dd~~y~-~~l~~~G 217 (316)
T COG1735 147 TPLEEKSLRAAARAHKETGAPISTHTPAGTM-------GLEQLRILAEE-GVDLRKVSIGHMDPNTDDVYYQ-KKLADRG 217 (316)
T ss_pred CHHHHHHHHHHHHHhhhcCCCeEEeccchhh-------hHHHHHHHHHc-CCChhHeeEeccCCCCChHHHH-HHHHhcC
Confidence 3444445666677777889999999976521 12234434443 3455689999995 232211 1122111
Q ss_pred CeeeeccccccCcccHHHHHHHHHHHHHHCCCCcEEEe-------cCCCCCcch-hhhhHHH--HHHHHHHHHHhhhcCC
Q 003372 286 PQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFS-------TDAYASPET-YFLGAKR--AREVVFSVLRDTCIDE 355 (825)
Q Consensus 286 pNVyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfg-------SD~~~~P~~-~~~~~~~--~r~~l~~~l~~~v~~g 355 (825)
--+-+|.=+...+.+...-...+.++++.+-.++|+.| +| .+.. .+.+... +.-++.+++..+-+.
T Consensus 218 a~l~fD~iG~d~y~pd~~r~~~~~~l~~~gy~d~i~ls~d~~~~~~~---~~~~~~~~~~~~~g~~~I~~~fIP~Lk~~- 293 (316)
T COG1735 218 AFLEFDRIGKDKYYPDEDRIAPLLELVARGYADLILLSHDDICLSDD---VFLKSMLKANGGWGYGYILNDFIPRLKRH- 293 (316)
T ss_pred ceEEecccCccccCcHHHhhhhHHHHHHhhHhhheecccchhhhhhh---HHHHhhhhhcCCcccchhhHhhHHHHHHc-
Confidence 12334443332222222223455666666666888888 33 1110 1111111 111223344443333
Q ss_pred CCChHHHHHHHHHHHHHhHHHHhcCC
Q 003372 356 DLSVGEAIEVAKDIFALNAAQFYKIN 381 (825)
Q Consensus 356 ~l~~~~a~~~~~~Il~~NA~rly~L~ 381 (825)
.++. +.+..+|-+|.+|+|...
T Consensus 294 Gvde----~~i~~mlvdNP~r~f~~~ 315 (316)
T COG1735 294 GVDE----ETIDTMLVDNPARLFTAK 315 (316)
T ss_pred CCCH----HHHHHHHhhCHHHHhccC
Confidence 3552 689999999999999753
No 58
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=84.93 E-value=8.8 Score=43.66 Aligned_cols=140 Identities=21% Similarity=0.271 Sum_probs=72.4
Q ss_pred CCc--EEEeeCCCCCCCCCCCCChhchHHHHhhcCCCCcEEEEeCCCC-chH-HHHHHHHHhCCeeeeccccccCccc--
Q 003372 227 DLP--LQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASY-PFS-KEASYLAYVYPQVYLDFGLAIPKLS-- 300 (825)
Q Consensus 227 glp--vq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~-p~~-~e~~~la~~~pNVyld~s~~~~~~~-- 300 (825)
|+| |.+|.|.+...+ ..|.++++.+..|--.|.--|..- +.. .+....++ ...++|+..-+....
T Consensus 188 ~~~g~~~vH~g~~~~~l-------~~l~~~~~~~di~~~~f~pth~~r~~~l~~~~i~~~~--~gg~iDv~~~~~~~~l~ 258 (389)
T TIGR01975 188 GKPGIVNFHVGDSKRAL-------QPIYELVENTDVPITQFLPTHINRNVPLFEAGLEFAK--KGGTIDLTSSIDPQFRK 258 (389)
T ss_pred CCCcEEEEEeCCchhhH-------HHHHHHHHhcCCChhheecCccCCCHHHHHHHHHHHH--hCCcEEEeCCCCccchh
Confidence 488 999999653211 135555665555555555556531 111 22222332 246677664221110
Q ss_pred -H-HHHHHHHHHHHHHC-CCCcEEEecCCCC-CcchhhhhHHH-------HHHHHHHHHHhhhcCCCCChHHHHHHHHHH
Q 003372 301 -V-QGMISSIKELLELA-PTKKVMFSTDAYA-SPETYFLGAKR-------AREVVFSVLRDTCIDEDLSVGEAIEVAKDI 369 (825)
Q Consensus 301 -~-~g~~~~l~~~le~~-~~~kilfgSD~~~-~P~~~~~~~~~-------~r~~l~~~l~~~v~~g~l~~~~a~~~~~~I 369 (825)
. ....+.++.+++.+ +.+|+.+|||+.. .|. +..... --..+-..+..++..+.++..+ .. +.
T Consensus 259 ~~~~~~~~~~~~~~~~Gv~~~~i~isSD~~gs~p~--~~~~g~~~~~g~g~~~sl~~~~~~lv~~g~ls~~e---al-~~ 332 (389)
T TIGR01975 259 EGEVAPAEGIKKALEAGVPLEKVTFSSDGNGSQPF--FDENGELTGLGVGSFETLFEEVREAVKDGDVPLEK---AL-RV 332 (389)
T ss_pred ccccChHHHHHHHHHcCCCcceEEEEeCCCCCCCc--cccccccccCCcCcHHHHHHHHHHHHHhCCCCHHH---HH-HH
Confidence 0 01123667777775 6789999999753 342 110000 0011223344556667788743 34 44
Q ss_pred HHHhHHHHhcCC
Q 003372 370 FALNAAQFYKIN 381 (825)
Q Consensus 370 l~~NA~rly~L~ 381 (825)
.-.|++++++++
T Consensus 333 ~T~npA~~Lgl~ 344 (389)
T TIGR01975 333 ITSNVAGVLNLT 344 (389)
T ss_pred HHHHHHHHhCCC
Confidence 557888999986
No 59
>PRK09357 pyrC dihydroorotase; Validated
Probab=83.97 E-value=8.8 Score=43.98 Aligned_cols=162 Identities=15% Similarity=0.080 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhhCCCcEEEeeCCCCC---------CCCC---CCCChh-----chHHHHhhcCCCCcEEEEeCCCCchHH
Q 003372 214 YIFISSLEVAQFLDLPLQIHTGFGDK---------DLDL---RLSNPL-----HLRAILEDKRFSKCRFVLLHASYPFSK 276 (825)
Q Consensus 214 ~~l~~l~e~~~e~glpvq~H~G~gd~---------~~~~---~~~~P~-----~L~~l~~~~~~P~l~ivl~H~g~p~~~ 276 (825)
..+..+++.++++|+|+.+|..-... +... ..+.|. .+..++.--+.-++++.+.|.+.+...
T Consensus 159 ~~l~~~~~~a~~~g~~v~iH~ee~~~~~~~~~~~g~~~~~~~~~~~p~~~E~~~i~~~~~la~~~g~~~hi~H~s~~~~~ 238 (423)
T PRK09357 159 RLMRRALEYAKALDLLIAQHCEDPSLTEGGVMNEGEVSARLGLPGIPAVAEEVMIARDVLLAEATGARVHICHVSTAGSV 238 (423)
T ss_pred HHHHHHHHHHHhcCCEEEEeCCCHHHhhcccccCChhhHHhCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEeCCCHHHH
Confidence 35667788899999999999874210 0000 011222 122222211233599999999877665
Q ss_pred HHHHHHHhC-Ceeeecccccc------------------Ccc-cHHHHHHHHHHHHHHCCCCcEEEecCCCCCcch----
Q 003372 277 EASYLAYVY-PQVYLDFGLAI------------------PKL-SVQGMISSIKELLELAPTKKVMFSTDAYASPET---- 332 (825)
Q Consensus 277 e~~~la~~~-pNVyld~s~~~------------------~~~-~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~---- 332 (825)
+....+... -+|+.+++... |.. ++.+ ...|.++++.+ ....+|||..++...
T Consensus 239 ~~i~~a~~~g~~v~~e~~ph~L~~~~~~~~~~~~~~k~~Pplr~~~~-~~~l~~~l~~G--~~~~i~sDh~p~~~~~k~~ 315 (423)
T PRK09357 239 ELIRWAKALGIKVTAEVTPHHLLLTDEDLLTYDPNYKVNPPLRTEED-REALIEGLKDG--TIDAIATDHAPHAREEKEC 315 (423)
T ss_pred HHHHHHHHcCCCEEEEechHHheEcHHHHhCcCCceEECCCCCCHHH-HHHHHHHHHcC--CCeEEecCCCCCChHHccC
Confidence 555555433 25665554411 111 1122 23445555433 234699995443311
Q ss_pred -hh---hhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhHHHHhcCCC
Q 003372 333 -YF---LGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKINL 382 (825)
Q Consensus 333 -~~---~~~~~~r~~l~~~l~~~v~~g~l~~~~a~~~~~~Il~~NA~rly~L~~ 382 (825)
+| .+-..+-..+..++...+.++.++.+ .+-+++..|++++++++.
T Consensus 316 ~~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~----~~~~~~t~~~A~~~g~~~ 365 (423)
T PRK09357 316 EFEAAPFGITGLETALSLLYTTLVKTGLLDLE----QLLEKMTINPARILGLPA 365 (423)
T ss_pred CHhhCCCCceEHHHHHHHHHHHHHHcCCCCHH----HHHHHHhHHHHHHhCCCC
Confidence 00 00000112233344455666788874 345556699999999853
No 60
>PLN02942 dihydropyrimidinase
Probab=83.89 E-value=22 Score=41.64 Aligned_cols=164 Identities=15% Similarity=0.091 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHhhCCCcEEEeeCCC--------------CCCCC-CCCCChhc-----hHHHHhhcCCCCcEEEEeCCCC
Q 003372 213 DYIFISSLEVAQFLDLPLQIHTGFG--------------DKDLD-LRLSNPLH-----LRAILEDKRFSKCRFVLLHASY 272 (825)
Q Consensus 213 d~~l~~l~e~~~e~glpvq~H~G~g--------------d~~~~-~~~~~P~~-----L~~l~~~~~~P~l~ivl~H~g~ 272 (825)
+..+...++.++++|+++.+|.-.. ..+.. ...+.|.. +..++.--++-+.++.+.|+..
T Consensus 166 ~~~l~~~~~~a~~~~~~v~~HaE~~~~~~~~~~~~~~~G~~~~~~~~~~rP~~~E~~av~~~~~la~~~g~~~~i~H~s~ 245 (486)
T PLN02942 166 DELLLEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATARAIRLAKFVNTPLYVVHVMS 245 (486)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHHHcCCCChhhhhccCCchHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 3456667788888899999995321 00110 01123421 2222211124578999999987
Q ss_pred chHHHHHHHHHhC-Ceeeecccc-------------------c---cCcccHHHHHHHHHHHHHHCCCCcEEEecCCCCC
Q 003372 273 PFSKEASYLAYVY-PQVYLDFGL-------------------A---IPKLSVQGMISSIKELLELAPTKKVMFSTDAYAS 329 (825)
Q Consensus 273 p~~~e~~~la~~~-pNVyld~s~-------------------~---~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~ 329 (825)
+-..+....++.. -+|..+++. + .|.......+..|.+.++.+ -...+|||.-++
T Consensus 246 ~~~~e~i~~~k~~G~~Vt~e~~ph~L~l~~~~~~~~~~~~~~~~k~~PPlr~~~~~~~L~~~l~~G--~i~~igTDh~p~ 323 (486)
T PLN02942 246 IDAMEEIARARKSGQRVIGEPVVSGLVLDDSKLWDPDFTIASKYVMSPPIRPAGHGKALQAALSSG--ILQLVGTDHCPF 323 (486)
T ss_pred HHHHHHHHHHHHCCCcEEEEECchhheeCHHHhcCcccccCcceEECCCCCCHHHHHHHHHHhcCC--ceEEEECCCCCC
Confidence 7654444444433 255555542 0 01111112223344444322 355699996443
Q ss_pred cchh--------h---hhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhHHHHhcCCC
Q 003372 330 PETY--------F---LGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKINL 382 (825)
Q Consensus 330 P~~~--------~---~~~~~~r~~l~~~l~~~v~~g~l~~~~a~~~~~~Il~~NA~rly~L~~ 382 (825)
.... | .+....-..+..++...+..+.++.. .+-.++..|.+++|++..
T Consensus 324 ~~~~k~~~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~i~~~----~~l~~~t~~pA~~lgl~~ 383 (486)
T PLN02942 324 NSTQKAFGKDDFRKIPNGVNGIEERMHLVWDTMVESGQISPT----DYVRVTSTECAKIFNIYP 383 (486)
T ss_pred ChHHhhcccCCHhhCCCCcccHHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHHHhCCCC
Confidence 3100 0 00000011133334445566778874 455667789999999853
No 61
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=83.66 E-value=13 Score=41.79 Aligned_cols=142 Identities=20% Similarity=0.152 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHhhCCCcEEEeeCCCCCCCCCCCCChhchHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCeeeec
Q 003372 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLD 291 (825)
Q Consensus 212 ~d~~l~~l~e~~~e~glpvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pNVyld 291 (825)
.|..+..+++.+... +|+.+|+...+ ....+..+++ +| ++++++.|+..- ...+..++. .||++.
T Consensus 178 ~d~~l~~l~~~~~~~-~~v~vHa~~~~--------~i~~~l~~~~--e~-g~~~~i~H~~~~-~~~~~~la~--~gv~v~ 242 (359)
T cd01309 178 RDLKLEALLPVLKGE-IPVRIHAHRAD--------DILTAIRIAK--EF-GIKITIEHGAEG-YKLADELAK--HGIPVI 242 (359)
T ss_pred CCccHHHHHHHHcCC-eeEEEEeCCHH--------HHHHHHHHHH--Hc-CCCEEEECchhH-HHHHHHHHH--cCCCEE
Confidence 455667777777654 99999986321 1333445555 45 678999999654 333444443 356554
Q ss_pred cccccCcccH-HH---HHHHHHHHHHHCCCCcEEEecCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHH
Q 003372 292 FGLAIPKLSV-QG---MISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAK 367 (825)
Q Consensus 292 ~s~~~~~~~~-~g---~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~r~~l~~~l~~~v~~g~l~~~~a~~~~~ 367 (825)
++..++.... +. ....+..+++.+| -++.++||...+|. ..+...+. ..+. ..++.. +..+
T Consensus 243 ~~P~~~~~~~~~~~~~~~~~~~~l~~aGG-v~valgsD~~~~~~------~~l~~~~~----~a~~-~gl~~~---~al~ 307 (359)
T cd01309 243 YGPTLTLPKKVEEVNDAIDTNAYLLKKGG-VAFAISSDHPVLNI------RNLNLEAA----KAVK-YGLSYE---EALK 307 (359)
T ss_pred ECccccccccHHHhhcchhhHHHHHHcCC-ceEEEECCCCCccc------hhHHHHHH----HHHH-cCCCHH---HHHH
Confidence 4322211100 00 0123445555433 46889999533221 11222111 1122 236753 3444
Q ss_pred HHHHHhHHHHhcCCCCc
Q 003372 368 DIFALNAAQFYKINLGV 384 (825)
Q Consensus 368 ~Il~~NA~rly~L~~~~ 384 (825)
. +-.|++++++++...
T Consensus 308 ~-~T~n~A~~lg~~~~~ 323 (359)
T cd01309 308 A-ITINPAKILGIEDRV 323 (359)
T ss_pred H-HHHHHHHHhCCCCCc
Confidence 4 558999999987543
No 62
>PLN02795 allantoinase
Probab=82.90 E-value=24 Score=41.66 Aligned_cols=162 Identities=17% Similarity=0.110 Sum_probs=89.0
Q ss_pred hhHHHHHHHHHHhhCCCcEEEeeCCCCC---------CC-C---CCCCChh--------chHHHHhh----cCCCCcEEE
Q 003372 212 IDYIFISSLEVAQFLDLPLQIHTGFGDK---------DL-D---LRLSNPL--------HLRAILED----KRFSKCRFV 266 (825)
Q Consensus 212 ~d~~l~~l~e~~~e~glpvq~H~G~gd~---------~~-~---~~~~~P~--------~L~~l~~~----~~~P~l~iv 266 (825)
++..+..+++.++++|+||.+|.-..+- +. + ...+.|. .+..+++. ++-|+.++.
T Consensus 210 ~~~~l~~~~~~a~~~g~~v~iH~E~~~l~~~~~~~~~~~~~~~~~~~~rP~~aE~~ai~~~~~la~~~~~~~~~~g~~lh 289 (505)
T PLN02795 210 TATHIKAALPVLAKYGRPLLVHAEVVSPVESDSRLDADPRSYSTYLKSRPPSWEQEAIRQLLEVAKDTRPGGVAEGAHVH 289 (505)
T ss_pred CHHHHHHHHHHHHHhCCEEEEecCChhHhhhhhhhhcCCcChhHhcccCCHHHHHHHHHHHHHHHHHhhhcccCCCCCEE
Confidence 3456778889999999999999864210 00 0 0112342 22333431 244799999
Q ss_pred EeCCCCc-hHHHHHHHHHhCC-eeeecccccc------------------Ccc-cHHHHHHHHHHHHHHCCCCcEEEecC
Q 003372 267 LLHASYP-FSKEASYLAYVYP-QVYLDFGLAI------------------PKL-SVQGMISSIKELLELAPTKKVMFSTD 325 (825)
Q Consensus 267 l~H~g~p-~~~e~~~la~~~p-NVyld~s~~~------------------~~~-~~~g~~~~l~~~le~~~~~kilfgSD 325 (825)
+.|.+.+ ...++...++... +|+++++... |-. ++ .-+..|-+.+.-+-.| +.+||
T Consensus 290 i~HiSt~~~~~e~i~~ak~~G~~Vt~Ev~ph~L~l~~~~~~~~~~~~k~~PPLR~~-~d~~aL~~al~~G~Id--~i~sD 366 (505)
T PLN02795 290 IVHLSDAESSLELIKEAKAKGDSVTVETCPHYLAFSAEEIPDGDTRYKCAPPIRDA-ANRELLWKALLDGDID--MLSSD 366 (505)
T ss_pred EEECCChHHHHHHHHHHHHCCCcEEEEeChhhhcccHHHccCCCCceEEcCCCCCh-HHHHHHHHHHhCCCce--EEecC
Confidence 9999877 6666666555443 6777765421 111 11 1123455555544444 68999
Q ss_pred CCCCcch--------hh---hhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhHHHHhcCC
Q 003372 326 AYASPET--------YF---LGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (825)
Q Consensus 326 ~~~~P~~--------~~---~~~~~~r~~l~~~l~~~v~~g~l~~~~a~~~~~~Il~~NA~rly~L~ 381 (825)
..++... +| .+....--.+..++...+ ++.++.. .+-.++..|++++|+++
T Consensus 367 Hap~~~~~K~~~~~~~~~a~~G~~gle~~l~~~~~~~~-~~~l~l~----~~v~~~s~~pA~~~gl~ 428 (505)
T PLN02795 367 HSPSPPDLKLLEEGNFLRAWGGISSLQFVLPATWTAGR-AYGLTLE----QLARWWSERPAKLAGLD 428 (505)
T ss_pred CCCCChHHhccCcCCHhhCCCCceeHHHHHHHHHHHHH-HcCCCHH----HHHHHHHHHHHHHhCCC
Confidence 6554311 00 000000122333343444 4448874 46677789999999993
No 63
>PRK07369 dihydroorotase; Provisional
Probab=82.03 E-value=16 Score=41.99 Aligned_cols=160 Identities=16% Similarity=0.033 Sum_probs=87.9
Q ss_pred HHHHHHHHHhhCCCcEEEeeCCCC--------CC---CCC-CCCChh-----chHHHHhhcCCCCcEEEEeCCCCchHHH
Q 003372 215 IFISSLEVAQFLDLPLQIHTGFGD--------KD---LDL-RLSNPL-----HLRAILEDKRFSKCRFVLLHASYPFSKE 277 (825)
Q Consensus 215 ~l~~l~e~~~e~glpvq~H~G~gd--------~~---~~~-~~~~P~-----~L~~l~~~~~~P~l~ivl~H~g~p~~~e 277 (825)
.+..+++.+++.|.++.+|.--.. .+ ... ..+.|. .+..++.--+.-+.++.+.|.+.+...+
T Consensus 163 ~l~~~~~~~~~~~~~v~~H~Ed~~l~~~~~~~~g~~~~~~~~~~~p~~aE~~av~r~~~la~~~~~~~hi~HvSs~~~~~ 242 (418)
T PRK07369 163 LLRRLLEYLKPLGKPVALWPCDRSLAGNGVMREGLLALRLGLPGDPASAETTALAALLELVAAIGTPVHLMRISTARSVE 242 (418)
T ss_pred HHHHHHHHHHhcCCeEEEecCChhhhhcCcccCChhHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEeCCCHHHHH
Confidence 456667788888999999974210 00 000 112342 2222222113448999999998776666
Q ss_pred HHHHHHhCC-eeeeccccccCcc-------------------cHHHHHHHHHHHHHHCCCCcEEEecCCCCCcch-----
Q 003372 278 ASYLAYVYP-QVYLDFGLAIPKL-------------------SVQGMISSIKELLELAPTKKVMFSTDAYASPET----- 332 (825)
Q Consensus 278 ~~~la~~~p-NVyld~s~~~~~~-------------------~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~----- 332 (825)
+..-++... +|+++++...-.. ++.. +..|-+.+..+-.+ +.+||.-++...
T Consensus 243 ~i~~ak~~g~~vt~Ev~phhL~l~~~~~~~~~~~~kv~PPLR~~~d-~~aL~~~l~~G~Id--~i~SDHaP~~~~~K~~~ 319 (418)
T PRK07369 243 LIAQAKARGLPITASTTWMHLLLDTEALASYDPNLRLDPPLGNPSD-RQALIEGVRTGVID--AIAIDHAPYTYEEKTVA 319 (418)
T ss_pred HHHHHHHcCCCeEEEecHHHHhccHHHHhccCCCcEECCCCCCHHH-HHHHHHHHhcCCCC--EEEcCCCCCCHHHccCC
Confidence 665555433 6777776542111 1111 23444445444445 689996444310
Q ss_pred hh---hhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhHHHHhcCC
Q 003372 333 YF---LGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (825)
Q Consensus 333 ~~---~~~~~~r~~l~~~l~~~v~~g~l~~~~a~~~~~~Il~~NA~rly~L~ 381 (825)
+| .+....--.|..++...+..+.++.. .+-+.+..|++|+|+++
T Consensus 320 ~~~~~~G~~G~e~~l~~~~~~~v~~~~i~l~----~~v~~~s~nPA~~lgl~ 367 (418)
T PRK07369 320 FAEAPPGAIGLELALPLLWQNLVETGELSAL----QLWQALSTNPARCLGQE 367 (418)
T ss_pred HhHCCCCceeHHHHHHHHHHHHHHcCCCCHH----HHHHHHHHhHHHHhCCC
Confidence 00 00001112334455566777889874 45667789999999996
No 64
>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology). But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.
Probab=81.73 E-value=18 Score=41.77 Aligned_cols=164 Identities=16% Similarity=0.145 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHHhhCCCcEEEeeCCCC--------------CCCCC-CCCCh-----hchHHHHhhcCCCCcEEEEeCCC
Q 003372 212 IDYIFISSLEVAQFLDLPLQIHTGFGD--------------KDLDL-RLSNP-----LHLRAILEDKRFSKCRFVLLHAS 271 (825)
Q Consensus 212 ~d~~l~~l~e~~~e~glpvq~H~G~gd--------------~~~~~-~~~~P-----~~L~~l~~~~~~P~l~ivl~H~g 271 (825)
++..+..+++.|+++|+||.+|++..+ .+... ..+.| ..+..++.-.+.-++++.+.|.+
T Consensus 160 ~~~~l~~~~~~a~~~g~~v~vH~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~~~~~~~la~~~g~~ihi~h~s 239 (447)
T cd01315 160 DDEQLEEAMKELAKTGSVLAVHAENPEITEALQEQAKAKGKRDYRDYLASRPVFTEVEAIQRILLLAKETGCRLHIVHLS 239 (447)
T ss_pred CHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHhHhhcCCCChHHhhccCCHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 444678888999999999999987421 00100 11122 12333332112346999999997
Q ss_pred CchHHHHHHHHHhC-Ceeeecccccc------------------Ccc-cHHHHHHHHHHHHHHCCCCcEEEecCCCCCcc
Q 003372 272 YPFSKEASYLAYVY-PQVYLDFGLAI------------------PKL-SVQGMISSIKELLELAPTKKVMFSTDAYASPE 331 (825)
Q Consensus 272 ~p~~~e~~~la~~~-pNVyld~s~~~------------------~~~-~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~ 331 (825)
.+...+....+... .+|+++++... |.. +... +..+-+.++.+ ...+.+||..++..
T Consensus 240 ~~~~~~~i~~~~~~g~~i~~e~~~h~l~~~~~~~~~~~~~~~~~Pplr~~~~-~~~l~~~l~~g--~i~~i~SDh~p~~~ 316 (447)
T cd01315 240 SAEAVPLIREARAEGVDVTVETCPHYLTFTAEDVPDGGTEFKCAPPIRDAAN-QEQLWEALENG--DIDMVVSDHSPCTP 316 (447)
T ss_pred CHHHHHHHHHHHHCCCceEEEeccccEEEcHHHccCCCCceEECCCCCChHH-HHHHHHHHhCC--ceeEEeCCCCCCCH
Confidence 76655554444332 35666544321 111 1111 12222233211 23459999544321
Q ss_pred h--------hhh---hHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhHHHHhcCCC
Q 003372 332 T--------YFL---GAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKINL 382 (825)
Q Consensus 332 ~--------~~~---~~~~~r~~l~~~l~~~v~~g~l~~~~a~~~~~~Il~~NA~rly~L~~ 382 (825)
. ++. +.-..-..+..++...++++.++.. .+-+.+..|++++++++.
T Consensus 317 ~~k~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~t~~pa~~~g~~~ 374 (447)
T cd01315 317 ELKLLGKGDFFKAWGGISGLQLGLPVMLTEAVNKRGLSLE----DIARLMCENPAKLFGLSH 374 (447)
T ss_pred HHhccCCCChhhCCCCeeEHHHhHHHHHHHHHHcCCCCHH----HHHHHHhHHHHHHhCCCC
Confidence 0 000 0000111233344455667788874 345556678888999863
No 65
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type. All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.
Probab=81.34 E-value=25 Score=40.20 Aligned_cols=162 Identities=15% Similarity=0.120 Sum_probs=82.5
Q ss_pred hhHHHHHHHHHHhhCCCcEEEeeCCCC-----------CCCC-CCCCChh-----chHHHHhhcCCCCcEEEEeCCCCch
Q 003372 212 IDYIFISSLEVAQFLDLPLQIHTGFGD-----------KDLD-LRLSNPL-----HLRAILEDKRFSKCRFVLLHASYPF 274 (825)
Q Consensus 212 ~d~~l~~l~e~~~e~glpvq~H~G~gd-----------~~~~-~~~~~P~-----~L~~l~~~~~~P~l~ivl~H~g~p~ 274 (825)
++..+..+++.++++|+|+.+|+-..+ .+.. ...+.|. .+..++.--+.-+.++++.|.+.+.
T Consensus 145 ~~~~l~~~~~~a~~~g~~v~iH~E~~~l~~~~~~~~g~~~~~~~~~~~p~~aE~~ai~~~~~la~~~~~~~~i~Hvs~~~ 224 (411)
T TIGR00857 145 DILSMRRALEYAAIAGVPIALHAEDPDLIYGGVMHEGPSAAQLGLPARPPEAEEVAVARLLELAKHAGCPVHICHISTKE 224 (411)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCHHHHhhhhhcCCcccHhhCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEeCCCHH
Confidence 344567778889999999999965321 1111 1123342 2222222113458999999998766
Q ss_pred HHHHHHHHHhCC-eeeeccccccCc------------------c-cHHHHHHHHHHHHHHCCCCcEEEecCCCCCcch--
Q 003372 275 SKEASYLAYVYP-QVYLDFGLAIPK------------------L-SVQGMISSIKELLELAPTKKVMFSTDAYASPET-- 332 (825)
Q Consensus 275 ~~e~~~la~~~p-NVyld~s~~~~~------------------~-~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~-- 332 (825)
..++...+.... +|+.+++...-. . +... +..|-+.+..+-.+ +.+||..+++..
T Consensus 225 ~l~~i~~a~~~g~~v~~ev~ph~L~~~~~~~~~~~~~~k~~Pplr~~~~-~~~L~~~l~~g~i~--~i~sDh~p~~~~~k 301 (411)
T TIGR00857 225 SLELIVKAKSQGIKITAEVTPHHLLLSEEDVARLDGNGKVNPPLREKED-RLALIEGLKDGIID--IIATDHAPHTLEEK 301 (411)
T ss_pred HHHHHHHHHHcCCcEEEeechhhheecHHHHhCCCccEEEcCCCCCHHH-HHHHHHHHhcCCCc--EEEcCCCCCChHHc
Confidence 655555554432 677776552211 1 1111 12344444433333 589996544310
Q ss_pred ------hhhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhHHHHhcCC
Q 003372 333 ------YFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (825)
Q Consensus 333 ------~~~~~~~~r~~l~~~l~~~v~~g~l~~~~a~~~~~~Il~~NA~rly~L~ 381 (825)
.+.+.....-.+..++ ..+.++.++.. +.++ .+..|++++++++
T Consensus 302 ~~~~~~~~~G~~g~e~~~~~~~-~~~~~~~~~~~---~~~~-~~t~~pa~~~g~~ 351 (411)
T TIGR00857 302 TKEFAAAPPGIPGLETALPLLL-QLLVKGLISLK---DLIR-MLSINPARIFGLP 351 (411)
T ss_pred cCCHhhCCCCceeHHHHHHHHH-HHHHhCCCCHH---HHHH-HHhHHHHHHhCCC
Confidence 0011111111222233 33445567864 3444 4557888899885
No 66
>TIGR03444 gshA_related glutamate--cysteine ligase family protein. Members of this bacterial protein family bear homology to glutamate--cysteine ligase, an enzyme in the two-step pathway of glutathione (GSH) biosynthesis, but are distinctly different. Among the bacterial genomes that carry the uncharacterized methyltransferase (TIGR03438) and conserved hypothetical protein TIGR03440, this protein is found in a subset, always in the vicinity of these other genes. Conserved hypothetical protein TIGR03442 is found in these same genomes. The role of this cassette is probably biosynthetic, but the product is unknown.
Probab=77.32 E-value=12 Score=42.39 Aligned_cols=38 Identities=29% Similarity=0.266 Sum_probs=35.3
Q ss_pred CCceEEecCcC-hHHHHHHHHHHHHHHHHHHHHHCCCeE
Q 003372 591 KGQFEIALGHT-VAAKAADNLIFTREVLRAVARKHGLLA 628 (825)
Q Consensus 591 pGQ~Ei~l~~~-~~l~aaD~~~~~r~~i~~iA~~~Gl~A 628 (825)
-||+|++..|. +.-++++.+...+..++.+|+++|+..
T Consensus 69 GgQvELSt~P~~sl~el~~el~~~l~~l~~~a~~~Gl~l 107 (390)
T TIGR03444 69 GGQLELSGPPADGLTAAVAALAADLAVLRAALAEDGLAL 107 (390)
T ss_pred CCEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 48999999997 788999999999999999999999964
No 67
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=76.86 E-value=1.2e+02 Score=33.26 Aligned_cols=25 Identities=12% Similarity=0.036 Sum_probs=20.7
Q ss_pred hhhHHHHHHHHHHhhCCCcEEEeeC
Q 003372 211 LIDYIFISSLEVAQFLDLPLQIHTG 235 (825)
Q Consensus 211 l~d~~l~~l~e~~~e~glpvq~H~G 235 (825)
+.+..+..+++.+.++|+++.+|..
T Consensus 157 ~~~e~l~~~~~~A~~~g~~v~~H~~ 181 (342)
T cd01299 157 FSEEELRAIVDEAHKAGLYVAAHAY 181 (342)
T ss_pred cCHHHHHHHHHHHHHcCCEEEEEeC
Confidence 3445677888999999999999986
No 68
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=74.31 E-value=44 Score=37.65 Aligned_cols=34 Identities=9% Similarity=-0.049 Sum_probs=23.7
Q ss_pred HHHHHHhhhcCCCCChHHHHHHHHHHHHHhHHHHhcCC
Q 003372 344 VFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (825)
Q Consensus 344 l~~~l~~~v~~g~l~~~~a~~~~~~Il~~NA~rly~L~ 381 (825)
+..++...++.+.++.. .+-+.+..|+++++++.
T Consensus 292 l~~~~~~~~~~~~~~~~----~~~~~~t~npA~~lgl~ 325 (374)
T cd01317 292 LPLLWTLLVKGGLLTLP----DLIRALSTNPAKILGLP 325 (374)
T ss_pred HHHHHHHHHHcCCCCHH----HHHHHHHHHHHHHhCCC
Confidence 33344455667778874 45666789999999986
No 69
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=74.00 E-value=66 Score=36.47 Aligned_cols=155 Identities=17% Similarity=0.022 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHhhC-CCcEEEeeCCCCCCCCC---CC-CChhchHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCe
Q 003372 213 DYIFISSLEVAQFL-DLPLQIHTGFGDKDLDL---RL-SNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQ 287 (825)
Q Consensus 213 d~~l~~l~e~~~e~-glpvq~H~G~gd~~~~~---~~-~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pN 287 (825)
+..+..+.+.+.++ |+|+.+|...+....+. .+ ..|..+..+.+. .+-+.++++.|+.+--..++..++..--+
T Consensus 185 ~e~l~~~~~~A~~~~g~~v~~H~~e~~~~~~~~~~~~~~~~~~~~~l~~~-g~lg~~~~~~H~~~~~~~~~~~l~~~g~~ 263 (401)
T TIGR02967 185 PEQLAAAGELAKEYPDVYVQTHLSENKDEIAWVKELFPEAKDYLDVYDHY-GLLGRRSVFAHCIHLSDEECQRLAETGAA 263 (401)
T ss_pred HHHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHcCCCCcHHHHHHHC-CCCCCCeEEEecccCCHHHHHHHHHcCCe
Confidence 34567778899999 99999999754221110 00 111122223321 33466889999965433444445543222
Q ss_pred eeeccccccCcccHHHHHHHHHHHHHHCCCCcEEEecCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHH
Q 003372 288 VYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAK 367 (825)
Q Consensus 288 Vyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~r~~l~~~l~~~v~~g~l~~~~a~~~~~ 367 (825)
|...+.. +.....|. ..++.+++. | -++.+|||+...+... .-...+... .+.... ...++.. +..+
T Consensus 264 v~~~P~~--~~~~~~g~-~~~~~~~~~-G-v~v~lGtD~~~~~~~~--~~~~~~~~~--~~~~~~-~~~~~~~---~~l~ 330 (401)
T TIGR02967 264 IAHCPTS--NLFLGSGL-FNLKKALEH-G-VRVGLGTDVGGGTSFS--MLQTLREAY--KVSQLQ-GARLSPF---EAFY 330 (401)
T ss_pred EEEChHH--HHHhccCC-CCHHHHHHC-C-CeEEEecCCCCCCCcC--HHHHHHHHH--HHhhhc-CCCCCHH---HHHH
Confidence 2222111 00000011 134555554 4 3899999964322111 111122211 111111 2346654 4555
Q ss_pred HHHHHhHHHHhcCCC
Q 003372 368 DIFALNAAQFYKINL 382 (825)
Q Consensus 368 ~Il~~NA~rly~L~~ 382 (825)
+.. .|+++.++++.
T Consensus 331 ~aT-~~~A~~lg~~~ 344 (401)
T TIGR02967 331 LAT-LGGARALDLDD 344 (401)
T ss_pred HHH-HHHHHHhCCcC
Confidence 554 56666778764
No 70
>PRK07583 cytosine deaminase-like protein; Validated
Probab=69.77 E-value=59 Score=37.50 Aligned_cols=56 Identities=11% Similarity=-0.020 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHhhCCCcEEEeeCCCCCCCCCCCCChhchHHHHhhcCCCCcEEEEeCCC
Q 003372 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHAS 271 (825)
Q Consensus 212 ~d~~l~~l~e~~~e~glpvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g 271 (825)
.+..+..+++.|.++|+|+.+|++..+... .. .+..+...+.. ..++-++++.|+.
T Consensus 210 ~d~~l~~i~~lA~~~G~~v~vH~~E~~~~~--~~-~l~~~~~~~~~-~G~~~~v~i~H~~ 265 (438)
T PRK07583 210 LDAQLDRLFRLARERGLDLDLHVDETGDPA--SR-TLKAVAEAALR-NGFEGKVTCGHCC 265 (438)
T ss_pred HHHHHHHHHHHHHHhCCCcEEeECCCCCch--HH-HHHHHHHHHHH-hCCCCCEEEEecc
Confidence 345788999999999999999997542110 01 12233333322 4455679999985
No 71
>PRK08044 allantoinase; Provisional
Probab=69.17 E-value=63 Score=37.50 Aligned_cols=34 Identities=15% Similarity=0.288 Sum_probs=24.0
Q ss_pred HHHHHHhhhcCCCCChHHHHHHHHHHHHHhHHHHhcCC
Q 003372 344 VFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (825)
Q Consensus 344 l~~~l~~~v~~g~l~~~~a~~~~~~Il~~NA~rly~L~ 381 (825)
+..++...+.++.++.. .+-+.+..|++|+|+++
T Consensus 342 l~~~~~~~v~~~~l~~~----~~v~~~s~npA~~lgl~ 375 (449)
T PRK08044 342 MDVMFDEAVQKRGMSLP----MFGKLMATNAADIFGLQ 375 (449)
T ss_pred HHHHHHHHHHcCCCCHH----HHHHHHHHhHHHHhCCC
Confidence 33445566777889974 34455668999999994
No 72
>PRK09059 dihydroorotase; Validated
Probab=66.70 E-value=63 Score=37.26 Aligned_cols=161 Identities=14% Similarity=0.074 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHhhCCCcEEEeeCCCC---CCC--------CC-CCCChh-----chHHHHhhcCCCCcEEEEeCCCCchH
Q 003372 213 DYIFISSLEVAQFLDLPLQIHTGFGD---KDL--------DL-RLSNPL-----HLRAILEDKRFSKCRFVLLHASYPFS 275 (825)
Q Consensus 213 d~~l~~l~e~~~e~glpvq~H~G~gd---~~~--------~~-~~~~P~-----~L~~l~~~~~~P~l~ivl~H~g~p~~ 275 (825)
+..+..+++.+.+.|.++.+|.--.+ .+. .+ ..+.|. .+..++.--+..+.++.+.|.+.+-.
T Consensus 165 ~~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~~~~~~~~~~~~~~~~rP~~aE~~av~r~~~la~~~~~~~hi~hvs~~~~ 244 (429)
T PRK09059 165 TQVMRRALTYARDFDAVIVHETRDPDLGGNGVMNEGLFASWLGLSGIPREAEVIPLERDLRLAALTRGRYHAAQISCAES 244 (429)
T ss_pred HHHHHHHHHHHHhcCCEEEEecCChhhhcCCCcCCcHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEecCCHHH
Confidence 44577788899999999999974321 000 00 122342 22222221246689999999987666
Q ss_pred HHHHHHHHhCC-eeeeccccccCcc-------------------cHHHHHHHHHHHHHHCCCCcEEEecCCCCCcch---
Q 003372 276 KEASYLAYVYP-QVYLDFGLAIPKL-------------------SVQGMISSIKELLELAPTKKVMFSTDAYASPET--- 332 (825)
Q Consensus 276 ~e~~~la~~~p-NVyld~s~~~~~~-------------------~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~--- 332 (825)
.++...++... +|+.+++...-.. ++.. +..|-+.+..+..+ +++||..++...
T Consensus 245 ~~~i~~ak~~g~~vt~ev~phhL~l~~~~~~~~~~~~kvnPPLR~~~d-~~~L~~~l~~g~id--~i~sDh~p~~~~~K~ 321 (429)
T PRK09059 245 AEALRRAKDRGLKVTAGVSINHLSLNENDIGEYRTFFKLSPPLRTEDD-RVAMVEAVASGTID--IIVSSHDPQDVDTKR 321 (429)
T ss_pred HHHHHHHHHCCCCEEEeecHHHHhccHHHHhccCCccEEcCCCCCHHH-HHHHHHHHHcCCCc--EEEeCCCCCCHHHCc
Confidence 66655554432 6777776532111 1111 12233333323222 367885444210
Q ss_pred --hhh---hHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhHHHHhcCC
Q 003372 333 --YFL---GAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (825)
Q Consensus 333 --~~~---~~~~~r~~l~~~l~~~v~~g~l~~~~a~~~~~~Il~~NA~rly~L~ 381 (825)
+|. +....-..+.-++ ..+.++.++.. .+-+++..|++|+|+|+
T Consensus 322 ~~~~~~~~G~~gle~~l~~~~-~~v~~~~l~l~----~~~~~~s~nPA~~~gl~ 370 (429)
T PRK09059 322 LPFSEAAAGAIGLETLLAAAL-RLYHNGEVPLL----RLIEALSTRPAEIFGLP 370 (429)
T ss_pred CChhhCCCCcccHHHHHHHHH-HHHHcCCCCHH----HHHHHHhHHHHHHhCCC
Confidence 010 0000111122222 35667888874 45566677999999995
No 73
>PRK09228 guanine deaminase; Provisional
Probab=66.52 E-value=96 Score=35.75 Aligned_cols=109 Identities=15% Similarity=-0.017 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHhhC-CCcEEEeeCCCCCCCCC---CCC-ChhchHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCe
Q 003372 213 DYIFISSLEVAQFL-DLPLQIHTGFGDKDLDL---RLS-NPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQ 287 (825)
Q Consensus 213 d~~l~~l~e~~~e~-glpvq~H~G~gd~~~~~---~~~-~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pN 287 (825)
+..+..+.+.|.++ |+|+++|...+..+... .+. .|..+.-+.+- .+-+-++++.|+.+--..++..++..--+
T Consensus 210 ~~~l~~~~~lA~~~~~~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~l~~~-G~l~~~~~~~H~~~l~~~~~~~la~~g~~ 288 (433)
T PRK09228 210 PEQLEAAGALAREHPDVWIQTHLSENLDEIAWVKELFPEARDYLDVYERY-GLLGPRAVFAHCIHLEDRERRRLAETGAA 288 (433)
T ss_pred HHHHHHHHHHHHHCCCCceEEeecCChhHHHHHHHHcCCCCCHHHHHHHc-CCCCCCeEEEeccCCCHHHHHHHHHcCCe
Confidence 34677788999998 99999999875322110 011 11123222221 23355889999965544555566654323
Q ss_pred eeeccccccCcccHHHHHHHHHHHHHHCCCCcEEEecCCC
Q 003372 288 VYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (825)
Q Consensus 288 Vyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (825)
|-..+.. +.....|+ ..+.++++.+ -++.+|||+.
T Consensus 289 v~~~P~s--n~~lg~g~-~~~~~~~~~G--v~v~lGtD~~ 323 (433)
T PRK09228 289 IAFCPTS--NLFLGSGL-FDLKRADAAG--VRVGLGTDVG 323 (433)
T ss_pred EEECCcc--HHhhcCCC-cCHHHHHHCC--CeEEEecCCC
Confidence 3332221 10000111 1344555543 4788999964
No 74
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=66.11 E-value=8.2 Score=35.68 Aligned_cols=68 Identities=13% Similarity=0.163 Sum_probs=27.3
Q ss_pred cceeeeeecccCCCCCCCCCHHHHHHHHHHHHhCC---CCCcCCchhhhhHHHHHHHHHHhhCCCcEEEeeCCC
Q 003372 167 VGLKSIAAYRSGLEINPHVTKKDAEEGLAEDLRSG---KPVRITNKSLIDYIFISSLEVAQFLDLPLQIHTGFG 237 (825)
Q Consensus 167 vgfks~~ay~~Gl~~~~~~~~~ea~~~~~r~l~~~---~~~~~~~~~l~d~~l~~l~e~~~e~glpvq~H~G~g 237 (825)
.|||+|+|-|-.-+-+..++.++.++..+. .| ....+....+....+..+.+...+...||.+|+..|
T Consensus 26 ~GfktVInlRpd~E~~~qp~~~~~~~~a~~---~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~~~Pvl~hC~sG 96 (110)
T PF04273_consen 26 QGFKTVINLRPDGEEPGQPSSAEEAAAAEA---LGLQYVHIPVDGGAITEEDVEAFADALESLPKPVLAHCRSG 96 (110)
T ss_dssp CT--EEEE-S-TTSTTT-T-HHCHHHHHHH---CT-EEEE----TTT--HHHHHHHHHHHHTTTTSEEEE-SCS
T ss_pred CCCcEEEECCCCCCCCCCCCHHHHHHHHHH---cCCeEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 589999998755443222222211111111 11 001222223333444555566666777888888765
No 75
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=65.77 E-value=12 Score=31.81 Aligned_cols=65 Identities=22% Similarity=0.238 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhCCCCeeeeecCCCC------CceEEecCcChHHHHHHHHHHHHHHHHHHHHHCCCeEEecc
Q 003372 566 PVFQEVLADLHSLNISVEQLHAEAGK------GQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVP 632 (825)
Q Consensus 566 ~~~~~i~~~l~~~Gi~ve~~h~E~~p------GQ~Ei~l~~~~~l~aaD~~~~~r~~i~~iA~~~Gl~AtF~p 632 (825)
.++.+|.+.|.+.|++|..+....-+ ++|.+.+.-.-+ ... ..-.++.-++.++++.|+..+|-|
T Consensus 11 Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p-~~~-~~~~l~~~l~~l~~~~~~~~~~~~ 81 (81)
T cd04869 11 GIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP-AGT-DLDALREELEELCDDLNVDISLEP 81 (81)
T ss_pred CHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC-CCC-CHHHHHHHHHHHHHHhcceEEecC
Confidence 47888999999999999999776554 777554444322 111 245678889999999999998864
No 76
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=65.10 E-value=1.1e+02 Score=35.08 Aligned_cols=106 Identities=17% Similarity=0.056 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhhCC-CcEEEeeCCCCCCCCC---CC---CChhchHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCC
Q 003372 214 YIFISSLEVAQFLD-LPLQIHTGFGDKDLDL---RL---SNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYP 286 (825)
Q Consensus 214 ~~l~~l~e~~~e~g-lpvq~H~G~gd~~~~~---~~---~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~p 286 (825)
..+..+.+.|.++| +++++|...+...... .+ ..| ++.+.+- .+-+.++++.|+.+--..++..++..--
T Consensus 208 e~l~~~~~~A~~~g~~~v~~H~~e~~~e~~~~~~~~g~~~~p--~~~l~~~-G~l~~~~~l~H~~~l~~~~~~~l~~~g~ 284 (429)
T cd01303 208 ELLAALGKLAKEHPDLHIQTHISENLDEIAWVKELFPGARDY--LDVYDKY-GLLTEKTVLAHCVHLSEEEFNLLKERGA 284 (429)
T ss_pred HHHHHHHHHHHHCCCCeEEEeeCCCHHHHHHHHHHcCCCCCH--HHHHHHC-CCCCCCcEEEeCCCCCHHHHHHHHHcCC
Confidence 35677788899999 9999999754211100 00 122 2222221 2235688999996544445555554433
Q ss_pred eeeeccccccCcccHHHHHHHHHHHHHHCCCCcEEEecCCC
Q 003372 287 QVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (825)
Q Consensus 287 NVyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (825)
+|...+.. +.....| ...++++++.+ -++.+|||+.
T Consensus 285 ~v~~~P~s--n~~l~~g-~~~~~~~~~~G--v~v~lGtD~~ 320 (429)
T cd01303 285 SVAHCPTS--NLFLGSG-LFDVRKLLDAG--IKVGLGTDVG 320 (429)
T ss_pred EEEECccc--hhhhccC-CCCHHHHHHCC--CeEEEeccCC
Confidence 33332221 1000111 12345555543 3588999964
No 77
>PRK08417 dihydroorotase; Provisional
Probab=65.06 E-value=1.1e+02 Score=34.54 Aligned_cols=166 Identities=15% Similarity=0.106 Sum_probs=84.1
Q ss_pred hhHHHHHHHHHHhhCCCcEEEeeCCC-----------CCCCCC-CCCChh-----chHHHHhhcCCCCcEEEEeCCCCch
Q 003372 212 IDYIFISSLEVAQFLDLPLQIHTGFG-----------DKDLDL-RLSNPL-----HLRAILEDKRFSKCRFVLLHASYPF 274 (825)
Q Consensus 212 ~d~~l~~l~e~~~e~glpvq~H~G~g-----------d~~~~~-~~~~P~-----~L~~l~~~~~~P~l~ivl~H~g~p~ 274 (825)
++..+..+++.+++.|.||.+|.--. ..+... ..+.|. .+..++.--+.-+.++.+.|.+.+-
T Consensus 128 ~~~~l~~~~~~a~~~g~~V~~HaEd~~~~~~~~~~~g~~~~~~~~~~rp~~aE~~~v~~~~~la~~~~~~lhi~hvS~~~ 207 (386)
T PRK08417 128 DANLLKVIAQYAKMLDVPIFCRCEDSSFDDSGVMNDGELSFELGLPGIPSIAETKEVAKMKELAKFYKNKVLFDTLALPR 207 (386)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeCCCHHHhhHHHHhcChhhHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHH
Confidence 34456666777888888888887331 000100 112232 2222222113457899999998766
Q ss_pred HHHHHHHHHhCC-eeeeccccccCcccHHH---------------HHHHHHHHHHHCCCCcE-EEecCCCCCcch-----
Q 003372 275 SKEASYLAYVYP-QVYLDFGLAIPKLSVQG---------------MISSIKELLELAPTKKV-MFSTDAYASPET----- 332 (825)
Q Consensus 275 ~~e~~~la~~~p-NVyld~s~~~~~~~~~g---------------~~~~l~~~le~~~~~ki-lfgSD~~~~P~~----- 332 (825)
..++..-++... +|..+++...-...... -+.....+.+..--+.| +.+||--+++..
T Consensus 208 ~~~~i~~ak~~g~~vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlR~~~d~~~L~~~l~~g~Id~i~SDHaP~~~~~K~~~ 287 (386)
T PRK08417 208 SLELLDKFKSEGEKLLKEVSIHHLILDDSACENFNTAAKLNPPLRSKEDRLALLEALKEGKIDFLTSLHSAKSNSKKDLA 287 (386)
T ss_pred HHHHHHHHHHCCCCEEEEechHHHeeCHHHhcCcCcccEECCCCCCHHHHHHHHHHHhcCCceEEEcCCCCCCHHHccCC
Confidence 555544444332 56666655321111000 00111222232222345 589996555311
Q ss_pred hh---hhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhHHHHhcCC
Q 003372 333 YF---LGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (825)
Q Consensus 333 ~~---~~~~~~r~~l~~~l~~~v~~g~l~~~~a~~~~~~Il~~NA~rly~L~ 381 (825)
+| .+....-..+.-++...+.++.++.. .+-..+..|++++|+++
T Consensus 288 ~~~a~~G~~g~e~~~~~~~~~~v~~~~~~~~----~~~~~~t~~pA~~lgl~ 335 (386)
T PRK08417 288 FDEAAFGIDSICEYFSLCYTYLVKEGIITWS----ELSRFTSYNPAQFLGLN 335 (386)
T ss_pred HhHCCCCchHHHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHHHhCCC
Confidence 11 11111223333344456777888874 45566778999999986
No 78
>PRK08323 phenylhydantoinase; Validated
Probab=64.46 E-value=86 Score=36.22 Aligned_cols=32 Identities=6% Similarity=0.236 Sum_probs=21.7
Q ss_pred HHHHhhhcCCCCChHHHHHHHHHHHHHhHHHHhcCC
Q 003372 346 SVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (825)
Q Consensus 346 ~~l~~~v~~g~l~~~~a~~~~~~Il~~NA~rly~L~ 381 (825)
.++...+..+.++.. .+-+.+..|.+++|++.
T Consensus 345 ~l~~~~~~~~~~~~~----~~~~~~t~~pA~~lgl~ 376 (459)
T PRK08323 345 LLFSEGVMTGRITLN----RFVELTSTNPAKIFGLY 376 (459)
T ss_pred HHHHHHHHcCCCCHH----HHHHHHhhHHHHHhCCC
Confidence 344455566778874 44556678999999984
No 79
>PF06877 RraB: Regulator of ribonuclease activity B; InterPro: IPR009671 This entry occurs in several hypothetical bacterial proteins of around 120 residues in length. The function of these proteins is unknown. The protein structure has been determined for one member of this group, the hypothetical protein VCO424 from Vibrio cholerae; it has an alpha+beta sandwich fold.; PDB: 1NXI_A.
Probab=64.37 E-value=44 Score=30.16 Aligned_cols=94 Identities=18% Similarity=0.183 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHhcCceEEEeeeeEEEEEeecccCCCCCCccCCCCCcCcCCccCCchHHHHHHHHHHHhCCCCeeeee
Q 003372 507 REALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHSLNISVEQLH 586 (825)
Q Consensus 507 R~~L~~~~~~~~~~~g~~~~~g~E~EF~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~h 586 (825)
...-+++++.+++ .|..+..-.++||+++-+. .+-++.+...+.+.|..|+...
T Consensus 3 ~~~n~~vl~~L~~-~Gddl~~~r~ieh~~~f~~-------------------------~~~~~~f~~~~~~~g~~v~~~~ 56 (104)
T PF06877_consen 3 IIENREVLEALEE-DGDDLSKPRPIEHWFYFED-------------------------EEDAEKFAEELEKLGYEVESAE 56 (104)
T ss_dssp HHHHHHHHHHHHH-HT--TTS-EEEEEEEEES--------------------------HHHHHHHHHHHHHHS---B---
T ss_pred HHHHHHHHHHHHh-cCCCCCCCeEEEEEEEeCC-------------------------HHHHHHHHHHHHHCCCEEEEee
Confidence 4455778888885 5999999999999998641 2456678888999999998877
Q ss_pred c--CCCCCceEEecCcChHHHHHHHHHHHHHHHHHHHHHCCCe
Q 003372 587 A--EAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLL 627 (825)
Q Consensus 587 ~--E~~pGQ~Ei~l~~~~~l~aaD~~~~~r~~i~~iA~~~Gl~ 627 (825)
. |-+.+.|.+.+.....+... .+...=.-+..+|+++|..
T Consensus 57 ~~~~d~~~~~~~~~~~~~~~~~~-~I~~~~~~l~~lA~~~~g~ 98 (104)
T PF06877_consen 57 EDEEDGDGPYCLDISREMVLDYE-DINAITQELEDLAKEFGGE 98 (104)
T ss_dssp -B-SS-SSBEEEEEEEEE-S-HH-HHHHHHHHHHHHHHHHT-E
T ss_pred cccCCCCceEEEEEEEecCCCHH-HHHHHHHHHHHHHHHhCcE
Confidence 5 67889999999887665443 3333344566777777654
No 80
>TIGR02033 D-hydantoinase D-hydantoinase. This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme.
Probab=63.99 E-value=1.3e+02 Score=34.69 Aligned_cols=35 Identities=6% Similarity=0.163 Sum_probs=24.1
Q ss_pred HHHHHHhhhcCCCCChHHHHHHHHHHHHHhHHHHhcCCC
Q 003372 344 VFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKINL 382 (825)
Q Consensus 344 l~~~l~~~v~~g~l~~~~a~~~~~~Il~~NA~rly~L~~ 382 (825)
+..++...+.++.++.. .+-+.+..|.+++|++..
T Consensus 345 l~~l~~~~v~~~~~~~~----~~~~~~t~~pa~~~gl~~ 379 (454)
T TIGR02033 345 MTLLFDEGVATGRITLE----KFVELTSTNPAKIFNMYP 379 (454)
T ss_pred HHHHHHHHHHcCCCCHH----HHHHHHhhHHHHHcCCCC
Confidence 33445556666778874 455667789999999853
No 81
>PRK09061 D-glutamate deacylase; Validated
Probab=62.74 E-value=1.7e+02 Score=34.63 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=21.5
Q ss_pred HHHHHHHHhhhcC-CCCChHHHHHHHHHHHHHhHHHHhc
Q 003372 342 EVVFSVLRDTCID-EDLSVGEAIEVAKDIFALNAAQFYK 379 (825)
Q Consensus 342 ~~l~~~l~~~v~~-g~l~~~~a~~~~~~Il~~NA~rly~ 379 (825)
..+.+++..++.+ +.++.. +.+++ +-.|++++++
T Consensus 400 ~~~~~~l~~~v~~~~~isl~---~ai~~-~T~~pA~~lg 434 (509)
T PRK09061 400 GTFARFLREYVRERKALSLL---EAIRK-CTLMPAQILE 434 (509)
T ss_pred cchHHHHHHHHhhcccCCHH---HHHHH-HHHHHHHHhc
Confidence 3456667777766 458874 34444 5566777778
No 82
>PRK06189 allantoinase; Provisional
Probab=62.57 E-value=73 Score=36.93 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=58.8
Q ss_pred CCCCcEEEEeCCCCchHHHHHHHHHhC-CeeeeccccccCcc-------------------cHHHHHHHHHHHHHHCCCC
Q 003372 259 RFSKCRFVLLHASYPFSKEASYLAYVY-PQVYLDFGLAIPKL-------------------SVQGMISSIKELLELAPTK 318 (825)
Q Consensus 259 ~~P~l~ivl~H~g~p~~~e~~~la~~~-pNVyld~s~~~~~~-------------------~~~g~~~~l~~~le~~~~~ 318 (825)
+..++++.+.|.+.+-..++..-++.. .+|+++++...... +... +..|.++++.+-
T Consensus 229 ~~~g~~~hi~HiSt~~~~~~i~~~k~~g~~vt~ev~ph~L~l~~~~~~~~~~~~~~~Pplr~~~~-~~~L~~~l~~G~-- 305 (451)
T PRK06189 229 QETGCPLHFVHISSGKAVALIAEAKKRGVDVSVETCPHYLLFTEEDFERIGAVAKCAPPLRSRSQ-KEELWRGLLAGE-- 305 (451)
T ss_pred HHhCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEeCHHHhhcCHhHhhCcCCceEEeCCCCChhh-HHHHHHHHhCCC--
Confidence 456788999998765544444333332 35666665432111 1111 234444444322
Q ss_pred cEEEecCCCCCcch------hhh---hHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhHHHHhcCC
Q 003372 319 KVMFSTDAYASPET------YFL---GAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (825)
Q Consensus 319 kilfgSD~~~~P~~------~~~---~~~~~r~~l~~~l~~~v~~g~l~~~~a~~~~~~Il~~NA~rly~L~ 381 (825)
-...+||..++... +|. +....-..+.-++...+.++.++.. .+-..+..|++++|+++
T Consensus 306 i~~i~sDh~p~~~~~K~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~----~~~~~~t~npA~~lgl~ 373 (451)
T PRK06189 306 IDMISSDHSPCPPELKEGDDFFLVWGGISGGQSTLLVMLTEGYIERGIPLE----TIARLLATNPAKRFGLP 373 (451)
T ss_pred ceEEECCCCCCCHHHcCcCCcccCCCCceeHHHHHHHHHHHHHhcCCCCHH----HHHHHHhhhHHHHhCCC
Confidence 23599996443210 000 0000011233344445567788874 45556669999999984
No 83
>PRK07213 chlorohydrolase; Provisional
Probab=60.36 E-value=1.2e+02 Score=34.03 Aligned_cols=147 Identities=14% Similarity=0.071 Sum_probs=74.7
Q ss_pred hhhHHHHHHHHHHhhCCCcEEEeeCCCCCCCCC----CCCChhchHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCC
Q 003372 211 LIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYP 286 (825)
Q Consensus 211 l~d~~l~~l~e~~~e~glpvq~H~G~gd~~~~~----~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~p 286 (825)
+.+..+..+.+.|.++|+|+.+|.+........ .-..| +..+.+.+-.|+ ++.|+.+--..+...|+..--
T Consensus 176 ~s~~~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~G~~~--v~~~~~~G~~~~---~i~H~~~~~~~~i~~la~~g~ 250 (375)
T PRK07213 176 YSDEELKFICKECKREKKIFSIHAAEHKGSVEYSLEKYGMTE--IERLINLGFKPD---FIVHATHPSNDDLELLKENNI 250 (375)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEeeCCchhHHHHHHHHcCCCh--HHHHHhcCCCCC---EEEECCCCCHHHHHHHHHcCC
Confidence 334567888999999999999999754211000 01123 333443222244 369986544455556665433
Q ss_pred eeeeccccccCcccHHHHHHHHHHHHHHCCCCcEEEecCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHH
Q 003372 287 QVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVA 366 (825)
Q Consensus 287 NVyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~r~~l~~~l~~~v~~g~l~~~~a~~~~ 366 (825)
.|.+.+..-... ..|. ..++++++.+ =++.+|||+..+. ....+++.- ... ....++.. +..
T Consensus 251 ~v~~~P~sn~~l--~~g~-~~v~~l~~~G--v~v~lGTD~~~~~-----~~~~~~e~~-~~~----~~~~~~~~---~~l 312 (375)
T PRK07213 251 PVVVCPRANASF--NVGL-PPLNEMLEKG--ILLGIGTDNFMAN-----SPSIFREME-FIY----KLYHIEPK---EIL 312 (375)
T ss_pred cEEECCcchhhh--ccCC-ccHHHHHHCC--CEEEEeeCCCCCc-----hHhHHHHHH-HHH----HHhCcCHH---HHH
Confidence 444443321110 0111 2345555544 3899999964321 112232221 111 11245643 345
Q ss_pred HHHHHHhHHHHhcCC
Q 003372 367 KDIFALNAAQFYKIN 381 (825)
Q Consensus 367 ~~Il~~NA~rly~L~ 381 (825)
+... .|+++.++++
T Consensus 313 ~~aT-~~gA~~lg~~ 326 (375)
T PRK07213 313 KMAT-INGAKILGLI 326 (375)
T ss_pred HHHH-HHHHHHhCCC
Confidence 5444 6777888885
No 84
>TIGR03178 allantoinase allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.
Probab=59.89 E-value=90 Score=36.03 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=21.8
Q ss_pred HHHHhhhcCCCCChHHHHHHHHHHHHHhHHHHhcCC
Q 003372 346 SVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (825)
Q Consensus 346 ~~l~~~v~~g~l~~~~a~~~~~~Il~~NA~rly~L~ 381 (825)
.++...+.++.++.. .+-+.+..|++++|+++
T Consensus 339 ~~~~~~~~~~~l~~~----~~~~~~t~~pA~~~g~~ 370 (443)
T TIGR03178 339 VMFDEAVQKRGLPLE----DIARLMATNPAKRFGLA 370 (443)
T ss_pred HHHHHHHHhcCCCHH----HHHHHHhHHHHHHcCCC
Confidence 344455567788874 45556678889999983
No 85
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=59.00 E-value=26 Score=29.80 Aligned_cols=62 Identities=18% Similarity=0.224 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhCCCCeeeeecCCCCCceEEecCcChHHHHHHHHHHHHHHHHHHHHHCCCeEEe
Q 003372 566 PVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATF 630 (825)
Q Consensus 566 ~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~r~~i~~iA~~~Gl~AtF 630 (825)
.++.++...|.+.|++|+.++.-.-.|+|-+.+.-.-+ .|+.-.++..+++++++.|+.+.|
T Consensus 14 Giv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~---~~~~~~l~~~L~~l~~~~~l~v~v 75 (76)
T PF13740_consen 14 GIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP---EDSLERLESALEELAEELGLDVSV 75 (76)
T ss_dssp THHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES---HHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred cHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC---cccHHHHHHHHHHHHHHCCcEEEE
Confidence 47889999999999999999999999999877766544 557778899999999999999875
No 86
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=57.58 E-value=1.2e+02 Score=34.16 Aligned_cols=141 Identities=24% Similarity=0.232 Sum_probs=66.8
Q ss_pred cEEEeeCCCCCCCCCCCCChhchHHHHhhcCCCCcEEEEeCCCCch--HHHHHHHHHhCCeeeecc-ccccCcc-cHHHH
Q 003372 229 PLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPF--SKEASYLAYVYPQVYLDF-GLAIPKL-SVQGM 304 (825)
Q Consensus 229 pvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~--~~e~~~la~~~pNVyld~-s~~~~~~-~~~g~ 304 (825)
|+.+|++.+..+ ...+.++++..-...-.++..|+...- ..+...++..-..+.++. +...... ....
T Consensus 192 ~i~vH~~~~~~~-------l~~v~~~l~~~Gv~~~~~~~~H~~~~~~~~~~~~~~~~~G~~~~v~~~~~~~~~~~~~~~- 263 (388)
T PRK10657 192 IVHVHMGDGKKG-------LQPLFELLENTDIPISQFLPTHVNRNEPLFEQALEFAKKGGVIDLTTSDPDFLGEGEVAP- 263 (388)
T ss_pred EEEEEeCCchHH-------HHHHHHHHHhcCCCcceeeCcccCCCHHHHHHHHHHHHcCCeEEEecCCCcccccCccCH-
Confidence 899998743111 112323432223333457788875421 123333443222333342 2111000 0011
Q ss_pred HHHHHHHHHHCC-CCcEEEecCCCC-Ccchh------hhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhHHH
Q 003372 305 ISSIKELLELAP-TKKVMFSTDAYA-SPETY------FLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQ 376 (825)
Q Consensus 305 ~~~l~~~le~~~-~~kilfgSD~~~-~P~~~------~~~~~~~r~~l~~~l~~~v~~g~l~~~~a~~~~~~Il~~NA~r 376 (825)
...+.++++.+. .+|++++||... .|... +.+... -..+...+...+....++. +.+-+++-.|+++
T Consensus 264 ~~~l~~~~~~G~~~d~v~l~tD~~~~~~~~~~~g~~~~~g~~~-~~~l~~~~~~~~~~~gis~----~~~l~~aT~npA~ 338 (388)
T PRK10657 264 AEALKRALEAGVPLSRVTLSSDGNGSLPKFDEDGNLVGLGVGS-VESLLEEVRELVKDEGLPL----EDALKPLTSNVAR 338 (388)
T ss_pred HHHHHHHHHcCCChhheEEECCCCCCCceeccCCCEeccCcCc-hhhHHHHHHHHHHhcCCCH----HHHHHHHHHHHHH
Confidence 245667777763 799999999422 11100 000000 0112222333443456786 3567788899999
Q ss_pred HhcCCC
Q 003372 377 FYKINL 382 (825)
Q Consensus 377 ly~L~~ 382 (825)
+|++..
T Consensus 339 ~lg~~~ 344 (388)
T PRK10657 339 FLKLNG 344 (388)
T ss_pred HhCCCC
Confidence 999864
No 87
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.
Probab=57.05 E-value=1e+02 Score=36.70 Aligned_cols=61 Identities=18% Similarity=0.218 Sum_probs=36.2
Q ss_pred CCcEEEecCCCC------Ccch-hhhhHHHHHHHHHHHHHhhhc--------CCCCChHHHHHHHHHHHHHhHHHHhcCC
Q 003372 317 TKKVMFSTDAYA------SPET-YFLGAKRAREVVFSVLRDTCI--------DEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (825)
Q Consensus 317 ~~kilfgSD~~~------~P~~-~~~~~~~~r~~l~~~l~~~v~--------~g~l~~~~a~~~~~~Il~~NA~rly~L~ 381 (825)
+.|+++.||.+. ||.. .|+-++.+|+..-.-+-.++. +.++++ +.+-.+...|+++.+++.
T Consensus 375 p~~~~~ttDhPnggpf~~YP~ii~~lm~~~~r~~~~~~~~~~~~~~~~l~~~~Re~sL----~EI~~mtTanPAkaLGL~ 450 (556)
T TIGR03121 375 PWRVFLTTDHPNGGPFTRYPRIIALLMSRKYREDMLSTVHPWAAARSTLGGIDREYSL----YEIAIMTRAGPAKLLGLT 450 (556)
T ss_pred cceeEEeccCCCCCcccchHHHHHHHcCHHHHHHHHHhcCHHHHhhcccccccCCCCH----HHHHHHHHHHHHHHhCCC
Confidence 369999999433 4432 355566666543211222221 234554 456677789999999985
No 88
>PRK08204 hypothetical protein; Provisional
Probab=55.94 E-value=1.9e+02 Score=33.25 Aligned_cols=102 Identities=19% Similarity=0.242 Sum_probs=54.1
Q ss_pred HHHHHHHHHhhCCCcEEEeeCCCCCCCCCCCCChhchHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCeeeecccc
Q 003372 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFGL 294 (825)
Q Consensus 215 ~l~~l~e~~~e~glpvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pNVyld~s~ 294 (825)
.+..+.+.+.++|+++++|...+..+ .....+..+.+. .+.+.++++.|+.+--..++..++.. ++++-..-
T Consensus 202 ~l~~~~~~A~~~g~~v~~H~~e~~~~-----~~~~~~~~l~~~-g~~~~~~~i~H~~~~~~~~~~~la~~--g~~v~~~P 273 (449)
T PRK08204 202 VARADFRLARELGLPISMHQGFGPWG-----ATPRGVEQLHDA-GLLGPDLNLVHGNDLSDDELKLLADS--GGSFSVTP 273 (449)
T ss_pred HHHHHHHHHHHcCCcEEEEEcCCCcc-----cCCCHHHHHHHC-CCCCCCeEEEecCCCCHHHHHHHHHc--CCCEEECh
Confidence 45566788999999999999754321 111223333332 34567888999976544455555543 22222111
Q ss_pred ccCcccHHHHHHHHHHHHHHCCCCcEEEecCCC
Q 003372 295 AIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (825)
Q Consensus 295 ~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (825)
..+.....+. ..++.+++.+ -++.+|||+.
T Consensus 274 ~~~~~~g~~~-~~~~~~~~~G--v~v~lGtD~~ 303 (449)
T PRK08204 274 EIEMMMGHGY-PVTGRLLAHG--VRPSLGVDVV 303 (449)
T ss_pred HHHhhhcCCC-CcHHHHHhcC--CceeeccccC
Confidence 0000000011 1245555543 4788999964
No 89
>PRK02382 dihydroorotase; Provisional
Probab=55.92 E-value=1.1e+02 Score=35.28 Aligned_cols=155 Identities=19% Similarity=0.217 Sum_probs=74.7
Q ss_pred HHHHHHHHHhhCCCcEEEeeCCCC------------CCCCC-CCCChh-----chHHHHhhcCCCCcEEEEeCCCCchHH
Q 003372 215 IFISSLEVAQFLDLPLQIHTGFGD------------KDLDL-RLSNPL-----HLRAILEDKRFSKCRFVLLHASYPFSK 276 (825)
Q Consensus 215 ~l~~l~e~~~e~glpvq~H~G~gd------------~~~~~-~~~~P~-----~L~~l~~~~~~P~l~ivl~H~g~p~~~ 276 (825)
.+..+++.++++|+|+.+|+.-.+ .+... ..+.|. .+..++...+..++++.+.|.+.+...
T Consensus 162 ~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~~g~~~~~~~~~~~p~~~E~~av~~~~~la~~~g~~~hi~h~ss~~~~ 241 (443)
T PRK02382 162 LFEEALAEAARLGVLATVHAEDEDLFDELAKLLKGDADADAWSAYRPAAAEAAAVERALEVASETGARIHIAHISTPEGV 241 (443)
T ss_pred HHHHHHHHHHhcCCeEEEecCCHHHHHHhhHhhcCCCCHhhCCCcCCHHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHH
Confidence 455566777788888888876421 00100 112332 122222222457899999999876554
Q ss_pred HHHHHHHhCCeeeecccccc------------------Ccc-cHHHHHHHHHHHHHHCCCCcEEEecCCCCCcch-----
Q 003372 277 EASYLAYVYPQVYLDFGLAI------------------PKL-SVQGMISSIKELLELAPTKKVMFSTDAYASPET----- 332 (825)
Q Consensus 277 e~~~la~~~pNVyld~s~~~------------------~~~-~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~----- 332 (825)
+++.-+ + |..+++... |.. +... +..|-+.+.-+-.+ +.+||..++...
T Consensus 242 ~~i~~~---~-vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlr~~~d-~~aL~~~l~~g~i~--~i~sDh~P~~~~~K~~~ 314 (443)
T PRK02382 242 DAARRE---G-ITCEVTPHHLFLSRRDWERLGTFGKMNPPLRSEKR-REALWERLNDGTID--VVASDHAPHTREEKDAD 314 (443)
T ss_pred HHHHHC---C-cEEEEchhhhhcCHHHHhccCceEEEcCCCCChHH-HHHHHHHHhCCCCC--EEEcCCCCCCHHHhcCC
Confidence 444322 2 444443321 111 1111 12333333322211 289996544210
Q ss_pred hh---hhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhHHHHhcCC
Q 003372 333 YF---LGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (825)
Q Consensus 333 ~~---~~~~~~r~~l~~~l~~~v~~g~l~~~~a~~~~~~Il~~NA~rly~L~ 381 (825)
+| .+....--.+. ++-..+.++.++.. .+-+.+..|++++|+++
T Consensus 315 ~~~~~~G~~g~e~~~~-~~~~~~~~~~~~l~----~~~~~~t~~pA~~~g~~ 361 (443)
T PRK02382 315 IWDAPSGVPGVETMLP-LLLAAVRKNRLPLE----RVRDVTAANPARIFGLD 361 (443)
T ss_pred hhhCCCCcccHHHHHH-HHHHHHHcCCCCHH----HHHHHHhHHHHHHcCCC
Confidence 00 00000111122 22245677889874 45556669999999995
No 90
>PRK13404 dihydropyrimidinase; Provisional
Probab=53.47 E-value=1.7e+02 Score=34.32 Aligned_cols=34 Identities=12% Similarity=0.227 Sum_probs=23.6
Q ss_pred HHHHHHhhhcCCCCChHHHHHHHHHHHHHhHHHHhcCC
Q 003372 344 VFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (825)
Q Consensus 344 l~~~l~~~v~~g~l~~~~a~~~~~~Il~~NA~rly~L~ 381 (825)
+..++...+..+.++.. .+-+++..|++|+|++.
T Consensus 352 l~~ll~~~v~~~~ls~~----~~~~~~t~~pA~~lgl~ 385 (477)
T PRK13404 352 LPLLFSEGVVKGRISLN----RFVALTSTNPAKLYGLY 385 (477)
T ss_pred HHHHHHHHHHcCCCCHH----HHHHHHHHHHHHHhCCC
Confidence 34445555666778874 45667778999999984
No 91
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=52.58 E-value=1.8e+02 Score=33.33 Aligned_cols=129 Identities=18% Similarity=0.202 Sum_probs=65.4
Q ss_pred HHHHHHHHhhCCCcEEEeeCCCCCCCCCCCCChhchHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCeeeeccccc
Q 003372 216 FISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFGLA 295 (825)
Q Consensus 216 l~~l~e~~~e~glpvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pNVyld~s~~ 295 (825)
+...++.+.++|+|+..|.- |+. ...|...++. -+.. -|.+... .++..... ..+|+++...
T Consensus 123 l~~~i~~A~~~g~~v~~Ha~-g~~--------~~~L~a~l~a--Gi~~----dH~~~~~-eea~e~l~--~G~~i~i~~g 184 (422)
T cd01295 123 MLAKIQAAKKAGKPVDGHAP-GLS--------GEELNAYMAA--GIST----DHEAMTG-EEALEKLR--LGMYVMLREG 184 (422)
T ss_pred HHHHHHHHHhCCCEEEEeCC-CCC--------HHHHHHHHHc--CCCC----CcCCCcH-HHHHHHHH--CCCEEEEECc
Confidence 44556788899999999982 211 1234445542 2211 3764332 33333332 4677776522
Q ss_pred cCcccHHHHHHHHHHHHHHCC---CCcEEEecCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHH
Q 003372 296 IPKLSVQGMISSIKELLELAP---TKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFAL 372 (825)
Q Consensus 296 ~~~~~~~g~~~~l~~~le~~~---~~kilfgSD~~~~P~~~~~~~~~~r~~l~~~l~~~v~~g~l~~~~a~~~~~~Il~~ 372 (825)
+. ...++.+++..+ ..+++++||++ .|.. ... +-.+..++...++. .++.. .+-+....
T Consensus 185 ~~-------~~~~~~~~~~l~~~~~~~i~l~TD~~-~~~~-~~~----~g~~~~v~r~a~~~-g~s~~----eal~~aT~ 246 (422)
T cd01295 185 SI-------AKNLEALLPAITEKNFRRFMFCTDDV-HPDD-LLS----EGHLDYIVRRAIEA-GIPPE----DAIQMATI 246 (422)
T ss_pred cc-------HhhHHHHHHhhhhccCCeEEEEcCCC-Cchh-hhh----cchHHHHHHHHHHc-CCCHH----HHHHHHhH
Confidence 21 112233333333 48999999964 3321 110 01111122222222 46653 45666778
Q ss_pred hHHHHhcC
Q 003372 373 NAAQFYKI 380 (825)
Q Consensus 373 NA~rly~L 380 (825)
|++++|++
T Consensus 247 n~A~~~gl 254 (422)
T cd01295 247 NPAECYGL 254 (422)
T ss_pred HHHHHcCC
Confidence 99999998
No 92
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.29 E-value=35 Score=31.97 Aligned_cols=71 Identities=13% Similarity=0.006 Sum_probs=34.6
Q ss_pred cceeeeeecccCCCCCCCCCHHHHHHHHHHHHhCCCCCcCCchhhhhHHHHHHHHHHhhCCCcEEEeeCCC
Q 003372 167 VGLKSIAAYRSGLEINPHVTKKDAEEGLAEDLRSGKPVRITNKSLIDYIFISSLEVAQFLDLPLQIHTGFG 237 (825)
Q Consensus 167 vgfks~~ay~~Gl~~~~~~~~~ea~~~~~r~l~~~~~~~~~~~~l~d~~l~~l~e~~~e~glpvq~H~G~g 237 (825)
.|||||+|-|-.-+-+-+++-+..++..+++--......+....+...-+.-+-++..+.+-||.-|+-.|
T Consensus 27 ~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~Al~eaegPVlayCrsG 97 (130)
T COG3453 27 LGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQRALDEAEGPVLAYCRSG 97 (130)
T ss_pred hccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCCCCHHHHHHHHHHHHHhCCCEEeeecCC
Confidence 68999999865554433344433333333321000111112222222223334456667788888887554
No 93
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.43 E-value=24 Score=30.77 Aligned_cols=67 Identities=13% Similarity=0.224 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhCCCCeeeeecCCCCCceEEecCcChHHHHHHHHHHHHHHHHHHHHHCCCeEEeccc
Q 003372 566 PVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPN 633 (825)
Q Consensus 566 ~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~r~~i~~iA~~~Gl~AtF~pK 633 (825)
.++.++.+.|.+.|++|..++.-.-.|+|-+.+.-.-+ ...+++-.++.-++.++.+.|+..++.+.
T Consensus 13 Giva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~-~~~~~~~~L~~~l~~l~~~~~l~~~i~~~ 79 (88)
T cd04872 13 GIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS-ESNLDFAELQEELEELGKELGVKIRIQHE 79 (88)
T ss_pred CHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC-CCCCCHHHHHHHHHHHHHHcCCEEEEEhH
Confidence 48889999999999999999998888888776555422 11344677899999999999999998765
No 94
>PRK00194 hypothetical protein; Validated
Probab=48.34 E-value=24 Score=30.80 Aligned_cols=67 Identities=13% Similarity=0.240 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhCCCCeeeeecCCCCCceEEecCcChHHHHHHHHHHHHHHHHHHHHHCCCeEEeccc
Q 003372 566 PVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPN 633 (825)
Q Consensus 566 ~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~r~~i~~iA~~~Gl~AtF~pK 633 (825)
.++.++.+.|.+.|++|..++.....|.|.+.+.-.-+ ...+..-.+++-+++++.+.|+.++|.+-
T Consensus 15 Giva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~l~~l~~~~~~~~~~~~~ 81 (90)
T PRK00194 15 GIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS-ESKKDFAELKEELEELGKELGVKIRIQHE 81 (90)
T ss_pred CHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec-CCCCCHHHHHHHHHHHHHHcCCEEEEEhH
Confidence 48889999999999999999999888888774332211 11223456788899999999999998653
No 95
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=47.89 E-value=35 Score=28.74 Aligned_cols=65 Identities=12% Similarity=0.128 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhCCCCeeeeecCCCCCceEEecCcChHHHHHHHHHHHHHHHHHHHHHCCCeEEecc
Q 003372 566 PVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVP 632 (825)
Q Consensus 566 ~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~r~~i~~iA~~~Gl~AtF~p 632 (825)
-++.++.+.|.+.|++|+.++.-.-.|+|-+.+.-.-+ ...++-.+++.+..++++.|+.++.-|
T Consensus 11 Giv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p--~~~~~~~l~~~l~~l~~~l~l~i~~~~ 75 (75)
T cd04870 11 GLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIP--DSADSEALLKDLLFKAHELGLQVRFEP 75 (75)
T ss_pred CHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcC--CCCCHHHHHHHHHHHHHHcCceEEEeC
Confidence 37889999999999999999777667777665543321 101355678999999999999988754
No 96
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=46.85 E-value=91 Score=36.31 Aligned_cols=68 Identities=22% Similarity=0.200 Sum_probs=38.5
Q ss_pred hhhHHHHHHHHHHhhCCCcEEEeeCCCCCCCCCCCCChhchHHHHhhcCCCCcEEEEeCCCCchHHHHHHHH
Q 003372 211 LIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLA 282 (825)
Q Consensus 211 l~d~~l~~l~e~~~e~glpvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la 282 (825)
+.+..+..+++.+.++|++|.+|+. |+...+. . -..+..+....-+++.+..+.|+...-..+...++
T Consensus 292 ~~~e~l~~~~~~a~~~g~~v~~Ha~-gd~~i~~--~-l~~~~~~~~~~g~~~~r~~i~H~~~~~~~~~~~l~ 359 (479)
T cd01300 292 ISPEELEELVRAADEAGLQVAIHAI-GDRAVDT--V-LDALEAALKDNPRADHRHRIEHAQLVSPDDIPRFA 359 (479)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEe-cHHHHHH--H-HHHHHHHHHhcCCCCCCceeeecccCCHHHHHHHH
Confidence 3455788889999999999999995 3211100 0 00122222311123678899999654433333333
No 97
>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid. Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.
Probab=46.53 E-value=2.1e+02 Score=32.13 Aligned_cols=72 Identities=24% Similarity=0.381 Sum_probs=41.4
Q ss_pred HHHHHHHHHHC-CCCcEEEecCCCC-CcchhhhhH------HHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhHHH
Q 003372 305 ISSIKELLELA-PTKKVMFSTDAYA-SPETYFLGA------KRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQ 376 (825)
Q Consensus 305 ~~~l~~~le~~-~~~kilfgSD~~~-~P~~~~~~~------~~~r~~l~~~l~~~v~~g~l~~~~a~~~~~~Il~~NA~r 376 (825)
...++.+++.+ +.+|++++||+.. .|.....+. ... ..+-..+...++.+.++.. .+-+.+-.|+++
T Consensus 263 ~~~l~~~~~~g~~~d~i~l~TD~~~~~p~~~~~g~~~~~g~~~~-~~~~~~~~~~v~~~~i~~~----~al~~~T~npA~ 337 (387)
T cd01308 263 SEALKRLLEQGVPLERITFSSDGNGSLPKFDENGNLVGLGVGSV-DTLLREVREAVKCGDIPLE----VALRVITSNVAR 337 (387)
T ss_pred HHHHHHHHHhCCCCCcEEEEECCCCCcccCccCCeEEecCcCcH-HHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHH
Confidence 35667777775 5689999999521 121100000 001 1112233345566778864 566777789999
Q ss_pred HhcCC
Q 003372 377 FYKIN 381 (825)
Q Consensus 377 ly~L~ 381 (825)
+|+++
T Consensus 338 ~lg~~ 342 (387)
T cd01308 338 ILKLR 342 (387)
T ss_pred HhCCC
Confidence 99986
No 98
>PRK08418 chlorohydrolase; Provisional
Probab=46.42 E-value=2.5e+02 Score=32.08 Aligned_cols=103 Identities=14% Similarity=0.081 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhhCCCcEEEeeCCCCCCCC--------------------CCCCChh-chHHHHhhcCCCCcEEEEeCCCC
Q 003372 214 YIFISSLEVAQFLDLPLQIHTGFGDKDLD--------------------LRLSNPL-HLRAILEDKRFSKCRFVLLHASY 272 (825)
Q Consensus 214 ~~l~~l~e~~~e~glpvq~H~G~gd~~~~--------------------~~~~~P~-~L~~l~~~~~~P~l~ivl~H~g~ 272 (825)
..+..+.+.+.++|+|+++|...+..... .+...|. +|..+ -..+.++.|+.+
T Consensus 190 e~l~~~~~~A~~~~~~i~~H~~E~~~E~~~~~~~~G~~~~~~~~~~~~~~~~~~pv~~l~~~------g~~~~~~~H~~~ 263 (408)
T PRK08418 190 ILAKKALQLAKKENLLVSTHFLESKAEREWLEESKGWFKKFFEKFLKEPKPLYTPKEFLELF------KGLRTLFTHCVY 263 (408)
T ss_pred HHHHHHHHHHHHcCCeEEEEecCCHHHHHHHHhccCchhhhhhhhcccccccCCHHHHHHHh------CCCCeEEEeccc
Confidence 35667788899999999999986321000 0011343 23322 123678999977
Q ss_pred chHHHHHHHHHhCCeeeeccccccCcccHHHHHHHHHHHHHHCCCCcEEEecCCC
Q 003372 273 PFSKEASYLAYVYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (825)
Q Consensus 273 p~~~e~~~la~~~pNVyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (825)
--..+...++..--+|-..+.. +...-.|. .-++++++.+ =++.+|||+.
T Consensus 264 ~~~~di~~la~~g~~v~~cP~s--n~~lg~g~-~p~~~~~~~G--i~v~lGtD~~ 313 (408)
T PRK08418 264 ASEEELEKIKSKNASITHCPFS--NRLLSNKA-LDLEKAKKAG--INYSIATDGL 313 (408)
T ss_pred CCHHHHHHHHHcCCcEEECHhH--HHHhcCCC-ccHHHHHhCC--CeEEEeCCCC
Confidence 6666777777643333222211 00000011 1344555543 4788999963
No 99
>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.
Probab=45.85 E-value=1.7e+02 Score=32.78 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=17.3
Q ss_pred CCChHHHHHHHHHHHHHhHHHHhcCC
Q 003372 356 DLSVGEAIEVAKDIFALNAAQFYKIN 381 (825)
Q Consensus 356 ~l~~~~a~~~~~~Il~~NA~rly~L~ 381 (825)
.++.. .+-+....|++++|+++
T Consensus 292 g~~~~----ea~~~~t~npa~~~gl~ 313 (365)
T TIGR03583 292 GYSLE----EVIEKVTKNAAEILKLT 313 (365)
T ss_pred CCCHH----HHHHHHHHHHHHHhCCC
Confidence 47763 56677789999999996
No 100
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=44.79 E-value=4.5e+02 Score=28.66 Aligned_cols=93 Identities=20% Similarity=0.096 Sum_probs=50.5
Q ss_pred HHHHHHHHHhhCC-CcEEEeeCCCCCCCCCCCCChhchHHHHhhcCCCCcEEEEeCCCCc-hH-HHHHHHHHh------C
Q 003372 215 IFISSLEVAQFLD-LPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYP-FS-KEASYLAYV------Y 285 (825)
Q Consensus 215 ~l~~l~e~~~e~g-lpvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p-~~-~e~~~la~~------~ 285 (825)
.+.+.++.+.+.| +++.+|.|-. ..|..+.+.+. -. .--+.|+-+- .. ..+..++.. +
T Consensus 154 ~f~~~~~~ar~~g~l~~t~HaGE~--------~~~~~v~~~~~--~~---~~RIgHg~~~~~~p~~~~~l~~~~i~ie~C 220 (305)
T cd00443 154 DFYSYYEYARRLGLLGLTLHCGET--------GNREELLQALL--LL---PDRIGHGIFLLKHPELIYLVKLRNIPIEVC 220 (305)
T ss_pred HHHHHHHHHHHcCCcceEEeecCC--------CChHHHHHHHH--hc---cceeeceEecCCCHHHHHHHHHcCCEEEEC
Confidence 5678999999999 9999999964 22333444444 12 3334665211 11 222333322 1
Q ss_pred --CeeeeccccccCcccHHHHHHHHHHHHHHCCCCcEEEecCCCCC
Q 003372 286 --PQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYAS 329 (825)
Q Consensus 286 --pNVyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~ 329 (825)
.|+++.....+ ....++.+++.+ -++..+||.+.+
T Consensus 221 P~SN~~~~~~~~~-------~~hP~~~~~~~G--~~v~i~TDd~~~ 257 (305)
T cd00443 221 PTSNVVLGTVQSY-------EKHPFMRFFKAG--LPVSLSTDDPGI 257 (305)
T ss_pred cchhhhhcCCCCh-------hhChHHHHHHCC--CeEEEeCCCCcc
Confidence 25544433211 112456666654 388899996553
No 101
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=44.60 E-value=35 Score=28.37 Aligned_cols=50 Identities=20% Similarity=0.335 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCCCeeeeecCCCCCceEEecCcChHHHHHHHHHHHHHHHHHHHHHCCC
Q 003372 569 QEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGL 626 (825)
Q Consensus 569 ~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~r~~i~~iA~~~Gl 626 (825)
+++.+.|..+|++++. .+ ..+++++..++-.. ++...-.++.+||+-+|+
T Consensus 22 ~ei~~~L~~lg~~~~~--~~-~~~~~~v~~P~~R~-----Di~~~~DliEei~r~~Gy 71 (71)
T smart00874 22 EEIEEILKRLGFEVEV--SG-DDDTLEVTVPSYRF-----DILIEADLIEEVARIYGY 71 (71)
T ss_pred HHHHHHHHHCCCeEEe--cC-CCCeEEEECCCCcc-----ccCcccHHHHHHHHHhCC
Confidence 5789999999999864 11 14678888887532 344445578999999986
No 102
>PRK06151 N-ethylammeline chlorohydrolase; Provisional
Probab=44.59 E-value=1.7e+02 Score=34.32 Aligned_cols=110 Identities=17% Similarity=0.198 Sum_probs=56.6
Q ss_pred hhhHHHHHHHHHHhhCCCcEEEeeCCCCCCCCC--CCCChhchHHHHhhcCCCCcEEEEeCCCCchH---------HHHH
Q 003372 211 LIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDL--RLSNPLHLRAILEDKRFSKCRFVLLHASYPFS---------KEAS 279 (825)
Q Consensus 211 l~d~~l~~l~e~~~e~glpvq~H~G~gd~~~~~--~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~---------~e~~ 279 (825)
..+..+..+.+.+.++|+|+++|+..++...+. .......+..+.+ ..+.+-++++.|+.+--. .+..
T Consensus 218 ~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~~~~~~-~g~l~~r~~l~H~~~l~~~~~~~~~~~~~~~ 296 (488)
T PRK06151 218 CTVDLLRRTAAAARELGCPVRLHCAQGVLEVETVRRLHGTTPLEWLAD-VGLLGPRLLIPHATYISGSPRLNYSGGDDLA 296 (488)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEECCchHHHHHHHHHcCCCHHHHHHH-cCCCCCCcEEEEEEEcCCccccccCCHHHHH
Confidence 445567888999999999999999655321100 0001111222222 134567889999854322 4455
Q ss_pred HHHHhCCeeeeccccccCcccHHHHHHHHHHHHHHCCCCcEEEecCC
Q 003372 280 YLAYVYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDA 326 (825)
Q Consensus 280 ~la~~~pNVyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~ 326 (825)
.++.. ++++...-..+.....+ ...++++++.+ -++.+|||+
T Consensus 297 ~la~~--g~~v~~~P~~~~~~g~~-~~p~~~l~~~G--v~v~lGtD~ 338 (488)
T PRK06151 297 LLAEH--GVSIVHCPLVSARHGSA-LNSFDRYREAG--INLALGTDT 338 (488)
T ss_pred HHHhc--CCEEEECchhhhhhccc-cccHHHHHHCC--CcEEEECCC
Confidence 55543 34333211111000011 12345555544 368899996
No 103
>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.
Probab=44.52 E-value=1.7e+02 Score=32.66 Aligned_cols=113 Identities=14% Similarity=0.069 Sum_probs=60.6
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHhC-CeeeeccccccCcc-----------------cHHHHHHHHHHHHHHCCCCcEE
Q 003372 260 FSKCRFVLLHASYPFSKEASYLAYVY-PQVYLDFGLAIPKL-----------------SVQGMISSIKELLELAPTKKVM 321 (825)
Q Consensus 260 ~P~l~ivl~H~g~p~~~e~~~la~~~-pNVyld~s~~~~~~-----------------~~~g~~~~l~~~le~~~~~kil 321 (825)
.-+.++++.|.+.+-..++...++.. .+|+.+++...-.. ++.. +..|-+.+.. .| +
T Consensus 146 ~~g~~lhi~HiSt~~~~~~i~~ak~~g~~vt~ev~phhL~l~~~~~~~~~~k~~PPLR~~~d-r~aL~~~l~~--id--~ 220 (344)
T cd01316 146 LHNRSIHICHVSSKEEINLIRLAKARGLKVTCEVSPHHLFLSQDDLPRGQYEVRPFLPTRED-QEALWENLDY--ID--C 220 (344)
T ss_pred HHCCCEEEEeCCCHHHHHHHHHHHHCCCcEEEEechHHeeccHHHhhcCCceeCCCCcCHHH-HHHHHHHHhc--CC--E
Confidence 34778888888766555554444433 26776665532111 1111 2233333321 22 5
Q ss_pred EecCCCCCcchh------hhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhHHHHhcCCC
Q 003372 322 FSTDAYASPETY------FLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKINL 382 (825)
Q Consensus 322 fgSD~~~~P~~~------~~~~~~~r~~l~~~l~~~v~~g~l~~~~a~~~~~~Il~~NA~rly~L~~ 382 (825)
.+||.-++.... +.+...+--.+.-++ ..|.+|.++.+ ..-.++..|.+++|+|..
T Consensus 221 i~SDHaP~~~~~K~~~~a~~G~~g~e~~lpl~~-~~v~~~~i~l~----~l~~~~s~nPAk~~gl~~ 282 (344)
T cd01316 221 FATDHAPHTLAEKTGNKPPPGFPGVETSLPLLL-TAVHEGRLTIE----DIVDRLHTNPKRIFNLPP 282 (344)
T ss_pred EEcCCCCCCHHHhcCCCCCCCcccHHHHHHHHH-HHHHcCCCCHH----HHHHHHHHhHHHHhCCCC
Confidence 899965544210 111111222233233 46788889974 567788899999999853
No 104
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=44.35 E-value=20 Score=39.19 Aligned_cols=54 Identities=22% Similarity=0.327 Sum_probs=41.0
Q ss_pred chHHHHHHHHHHHhC-CCCeeeeecCCCCCceEEecCcChHHHHHHHHHHHHHHHHHHHHHCCCeEEeccc
Q 003372 564 VSPVFQEVLADLHSL-NISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPN 633 (825)
Q Consensus 564 ~~~~~~~i~~~l~~~-Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~r~~i~~iA~~~Gl~AtF~pK 633 (825)
..-|-+.++++|-++ .|+==.+..| | -+|.++.+|+-+|.+|...|++-||||-
T Consensus 248 lrGf~rAMvKtMt~alkiPHF~y~dE-------I---------n~~sLvklr~elk~~a~e~~IKltfmPf 302 (474)
T KOG0558|consen 248 LRGFSRAMVKTMTEALKIPHFGYVDE-------I---------NCDSLVKLRQELKENAKERGIKLTFMPF 302 (474)
T ss_pred chhHHHHHHHHHHHHhcCCccccccc-------c---------ChHHHHHHHHHHhhhhhhcCceeeehHH
Confidence 345777888887664 4553333332 3 3699999999999999999999999998
No 105
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=44.11 E-value=32 Score=36.49 Aligned_cols=68 Identities=22% Similarity=0.278 Sum_probs=38.6
Q ss_pred HHHHHHHHhhCCCcEEEeeCCCCCCCCCCCCChhchH---HHHhhcCCCCcEEEEeCC--CCchHH------HHHHHHHh
Q 003372 216 FISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLR---AILEDKRFSKCRFVLLHA--SYPFSK------EASYLAYV 284 (825)
Q Consensus 216 l~~l~e~~~e~glpvq~H~G~gd~~~~~~~~~P~~L~---~l~~~~~~P~l~ivl~H~--g~p~~~------e~~~la~~ 284 (825)
-+|+++.+++.|+||.+-||... -..++ .+++ +--+-+++++|| +||--. .+..|...
T Consensus 102 n~~lL~~~A~tgkPvIlSTG~st---------l~EI~~Av~~~~--~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~ 170 (241)
T PF03102_consen 102 NLPLLEYIAKTGKPVILSTGMST---------LEEIERAVEVLR--EAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKER 170 (241)
T ss_dssp -HHHHHHHHTT-S-EEEE-TT-----------HHHHHHHHHHHH--HHCT--EEEEEE-SSSS--GGG--TTHHHHHHHH
T ss_pred CHHHHHHHHHhCCcEEEECCCCC---------HHHHHHHHHHHH--hcCCCCEEEEecCCCCCCChHHcChHHHHHHHHh
Confidence 45778999999999999999652 11122 2232 235789999998 687432 34567778
Q ss_pred CCeeeeccccc
Q 003372 285 YPQVYLDFGLA 295 (825)
Q Consensus 285 ~pNVyld~s~~ 295 (825)
|+ +-++.|--
T Consensus 171 f~-~~vG~SDH 180 (241)
T PF03102_consen 171 FG-VPVGYSDH 180 (241)
T ss_dssp ST-SEEEEEE-
T ss_pred cC-CCEEeCCC
Confidence 88 66666653
No 106
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=42.90 E-value=1.6e+02 Score=31.10 Aligned_cols=98 Identities=17% Similarity=0.158 Sum_probs=52.7
Q ss_pred HHHHHHHHhhCCCcEEEeeCCCCCCCCCCCCChhchHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCeeeeccccc
Q 003372 216 FISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFGLA 295 (825)
Q Consensus 216 l~~l~e~~~e~glpvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pNVyld~s~~ 295 (825)
+..+++.+.++|+|+++|++...... ....+..+.+ ..|+ + +.|+.+.-..+...++.. ++.+-..-.
T Consensus 127 l~~~~~~A~~~g~~v~~H~~e~~~~~-----g~~~i~~~~~--~~~~--~-i~H~~~l~~~~~~~la~~--g~~v~~~P~ 194 (263)
T cd01305 127 LEDILELLRRRGKLFAIHASETRESV-----GMTDIERALD--LEPD--L-LVHGTHLTDEDLELVREN--GVPVVLCPR 194 (263)
T ss_pred HHHHHHHHHHCCCeeEEecCCCCCCC-----CchhHHHHHh--CCCC--E-EEEcCCCCHHHHHHHHHc--CCcEEEChh
Confidence 78889999999999999997542211 1112444555 3343 3 479865544555555543 222221111
Q ss_pred cCcccHHHHHHHHHHHHHHCCCCcEEEecCCCC
Q 003372 296 IPKLSVQGMISSIKELLELAPTKKVMFSTDAYA 328 (825)
Q Consensus 296 ~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~ 328 (825)
.+.....|. ..++++++.+ -++.+|||+..
T Consensus 195 sn~~l~~g~-~p~~~l~~~G--v~v~lGtD~~~ 224 (263)
T cd01305 195 SNLYFGVGI-PPVAELLKLG--IKVLLGTDNVM 224 (263)
T ss_pred hHHHhCCCC-CCHHHHHHCC--CcEEEECCCCc
Confidence 100000011 1345666654 58889999643
No 107
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=41.71 E-value=1.3e+02 Score=34.80 Aligned_cols=107 Identities=17% Similarity=0.034 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHhhCCCcEEEeeCCCCCCCCC----CCCChhchHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCee
Q 003372 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQV 288 (825)
Q Consensus 213 d~~l~~l~e~~~e~glpvq~H~G~gd~~~~~----~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pNV 288 (825)
+..+..+.+.+.++|+|+++|...+...... .-..| ++.+.+. .+.+-++++.|+.+--..+...++..--.|
T Consensus 213 ~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~--~~~l~~~-g~l~~~~~~~H~~~l~~~~~~~la~~g~~v 289 (451)
T PRK08203 213 RELMRESAALARRLGVRLHTHLAETLDEEAFCLERFGMRP--VDYLEDL-GWLGPDVWLAHCVHLDDAEIARLARTGTGV 289 (451)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCH--HHHHHHc-CCCCCCeEEEEEeCCCHHHHHHHHhcCCeE
Confidence 3356677888999999999999654211000 00122 1222221 344668889999655444555555432122
Q ss_pred eeccccccCcccHHHHHHHHHHHHHHCCCCcEEEecCCC
Q 003372 289 YLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (825)
Q Consensus 289 yld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (825)
...+. .+.....+ ...++++++.+ -++.+|||+.
T Consensus 290 ~~~P~--~~~~l~~~-~~~~~~~~~~G--v~v~lGtD~~ 323 (451)
T PRK08203 290 AHCPC--SNMRLASG-IAPVRELRAAG--VPVGLGVDGS 323 (451)
T ss_pred EECcH--HhhhhccC-CCCHHHHHHCC--CeEEEecCCC
Confidence 22111 00000001 11345555544 3788999964
No 108
>PRK09045 N-ethylammeline chlorohydrolase; Provisional
Probab=41.10 E-value=1.7e+02 Score=33.78 Aligned_cols=106 Identities=20% Similarity=0.203 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhhCCCcEEEeeCCCCCCCC--CC--CCChhchHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCeee
Q 003372 214 YIFISSLEVAQFLDLPLQIHTGFGDKDLD--LR--LSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVY 289 (825)
Q Consensus 214 ~~l~~l~e~~~e~glpvq~H~G~gd~~~~--~~--~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pNVy 289 (825)
..+..+++.+.++|+++++|.+.+..... .. -..| +..+.+. .+-+-++++.|+.+--..++..++.. ++.
T Consensus 202 ~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~--~~~l~~~-g~l~~r~~~~H~~~l~~~~~~~la~~--g~~ 276 (443)
T PRK09045 202 ENLERIRTLAEQLDLPIHIHLHETAQEIADSLKQHGQRP--LARLARL-GLLGPRLIAVHMTQLTDAEIALLAET--GCS 276 (443)
T ss_pred HHHHHHHHHHHHcCCCEEEeecCcHHHHHHHHHHhCCCH--HHHHHHc-CCCCCCeEEEEecCCCHHHHHHHHHc--CCe
Confidence 35667788899999999999875411100 00 0112 2222222 23455788889965434444555543 333
Q ss_pred eccccccCcccHHHHHHHHHHHHHHCCCCcEEEecCCC
Q 003372 290 LDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (825)
Q Consensus 290 ld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (825)
+-.....+.....+ ...++++++.+ -++.+|||+.
T Consensus 277 i~~~P~~~~~~~~~-~~~~~~l~~~G--v~v~lGtD~~ 311 (443)
T PRK09045 277 VVHCPESNLKLASG-FCPVAKLLQAG--VNVALGTDGA 311 (443)
T ss_pred EEECHHHHhhhccC-CCcHHHHHHCC--CeEEEecCCC
Confidence 31111000000001 12345555533 3678999954
No 109
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=39.85 E-value=3.6e+02 Score=30.24 Aligned_cols=115 Identities=17% Similarity=0.116 Sum_probs=59.0
Q ss_pred CCCCcEEEEeCCCCchHHHHHHHHHhCCeeeeccccccCcccH------------------HHHHHHHHHHHHHCCCCcE
Q 003372 259 RFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFGLAIPKLSV------------------QGMISSIKELLELAPTKKV 320 (825)
Q Consensus 259 ~~P~l~ivl~H~g~p~~~e~~~la~~~pNVyld~s~~~~~~~~------------------~g~~~~l~~~le~~~~~ki 320 (825)
+..+.++.+.|.+.+-..+...-++ .+|+.+++...-.... ..-+..|.+.++.+- -.
T Consensus 168 ~~~~~~~hi~Hvs~~~~~~~i~~~k--~~vt~ev~ph~L~l~~~~~~~~~~~~k~~PPlr~~~d~~aL~~~l~~G~--id 243 (361)
T cd01318 168 RRHGARLHICHVSTPEELKLIKKAK--PGVTVEVTPHHLFLDVEDYDRLGTLGKVNPPLRSREDRKALLQALADGR--ID 243 (361)
T ss_pred HHHCCCEEEEeCCCHHHHHHHHHhC--CCeEEEeCHHHhhcCHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHhCCC--CC
Confidence 4578999999998765444443333 5777777654211100 011223444444332 23
Q ss_pred EEecCCCCCcch-----hh---hhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhHHHHhcCCC
Q 003372 321 MFSTDAYASPET-----YF---LGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKINL 382 (825)
Q Consensus 321 lfgSD~~~~P~~-----~~---~~~~~~r~~l~~~l~~~v~~g~l~~~~a~~~~~~Il~~NA~rly~L~~ 382 (825)
+++||.-++... +| .+.. ..+.+-.++-.++.++.++.. .+-+.+..|++++|+++.
T Consensus 244 ~i~SDh~P~~~~~k~~~~~~a~~G~~-g~e~~l~~~~~~v~~~~l~l~----~a~~~~t~nPA~~lgl~~ 308 (361)
T cd01318 244 VIASDHAPHTLEEKRKGYPAAPSGIP-GVETALPLMLTLVNKGILSLS----RVVRLTSHNPARIFGIKN 308 (361)
T ss_pred EEeeCCCCCCHHHccCChhhCCCCCc-cHHHHHHHHHHHHHcCCCCHH----HHHHHHhHHHHHHhCCCC
Confidence 599995333210 00 0000 111211233346667788874 345566778889999853
No 110
>PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional
Probab=39.68 E-value=1.3e+02 Score=34.78 Aligned_cols=153 Identities=18% Similarity=0.105 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHhhCCCcEEEeeCCCCCCCCC----CCCChhchHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCee
Q 003372 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQV 288 (825)
Q Consensus 213 d~~l~~l~e~~~e~glpvq~H~G~gd~~~~~----~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pNV 288 (825)
+..+..+.+.+.++|+++++|...+....+. .-..| +..+.+. .+-+-++++.|+.+--..+...++..--+|
T Consensus 196 ~e~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~g~~~--~~~l~~~-Gll~~~~~~~H~~~l~~~d~~~la~~g~~v 272 (435)
T PRK15493 196 TELLEECARIAVENQTMVHIHLSETEREVRDIEAQYGKRP--VEYAASC-GLFKRPTVIAHGVVLNDNERAFLAEHDVRV 272 (435)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCH--HHHHHHc-CCCCCCcEEEEeecCCHHHHHHHHHcCCeE
Confidence 3467778899999999999999764221100 01123 2222221 234567889999765555566666543333
Q ss_pred eeccccccCcccHHHHHHHHHHHHHHCCCCcEEEecCCCCCcchhhhhHHHHHHH-HHHHHHhhhc--CCCCChHHHHHH
Q 003372 289 YLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREV-VFSVLRDTCI--DEDLSVGEAIEV 365 (825)
Q Consensus 289 yld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~r~~-l~~~l~~~v~--~g~l~~~~a~~~ 365 (825)
-..+.. +.....|. .-++.+++.+ -++.+|||+..-. . ....+.+. +...+...+. ...++.. +.
T Consensus 273 ~~~P~s--n~~l~~g~-~p~~~~~~~G--v~v~lGtD~~~~~---~-~~d~~~~~~~a~~~~~~~~~~~~~~~~~---~~ 340 (435)
T PRK15493 273 AHNPNS--NLKLGSGI-ANVKAMLEAG--IKVGIATDSVASN---N-NLDMFEEMRIATLLQKGIHQDATALPVE---TA 340 (435)
T ss_pred EEChHH--HHHHhcCc-ccHHHHHHCC--CeEEEccCccccC---C-CcCHHHHHHHHHHHHhhccCCCCcCCHH---HH
Confidence 222211 00000111 1345555543 4788999963211 0 01112211 1112222121 1245543 45
Q ss_pred HHHHHHHhHHHHhcCC
Q 003372 366 AKDIFALNAAQFYKIN 381 (825)
Q Consensus 366 ~~~Il~~NA~rly~L~ 381 (825)
.+... .|+++.++++
T Consensus 341 l~~aT-~~gA~~lg~~ 355 (435)
T PRK15493 341 LTLAT-KGAAEVIGMK 355 (435)
T ss_pred HHHHh-HHHHHHcCCC
Confidence 55544 7888888875
No 111
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=39.20 E-value=1.3e+02 Score=33.73 Aligned_cols=108 Identities=24% Similarity=0.257 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHhhCCCcEEEeeCCCCCCCC--C--CCCChhchHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCee
Q 003372 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLD--L--RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQV 288 (825)
Q Consensus 213 d~~l~~l~e~~~e~glpvq~H~G~gd~~~~--~--~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pNV 288 (825)
+..+..+++.|.++|+++.+|.+....... . .-..+ +..+.+. ...+.++.+.|+.+--..+...++.. ++
T Consensus 193 ~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~i~H~~~l~~~~~~~l~~~--gi 267 (411)
T cd01298 193 DELLREVAELAREYGVPLHIHLAETEDEVEESLEKYGKRP--VEYLEEL-GLLGPDVVLAHCVWLTDEEIELLAET--GT 267 (411)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCCH--HHHHHHc-CCCCCCeEEEEecCCCHHHHHHHHHc--CC
Confidence 345677888999999999999854311000 0 00112 2222221 34467888999865433333334332 34
Q ss_pred eeccccccCcccHHHHHHHHHHHHHHCCCCcEEEecCCCC
Q 003372 289 YLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYA 328 (825)
Q Consensus 289 yld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~ 328 (825)
.+-+.-..+.....+ ...++.+++.+ -++.+|||+..
T Consensus 268 ~~~~~p~~~~~~~~~-~~~~~~~~~~G--v~~~~GsD~~~ 304 (411)
T cd01298 268 GVAHNPASNMKLASG-IAPVPEMLEAG--VNVGLGTDGAA 304 (411)
T ss_pred eEEEChHHhhhhhhC-CCCHHHHHHCC--CcEEEeCCCCc
Confidence 433221111000001 12355666643 25789999643
No 112
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=38.56 E-value=3.3e+02 Score=32.45 Aligned_cols=18 Identities=6% Similarity=-0.033 Sum_probs=14.4
Q ss_pred HHHHHHHHHhHHHHhcCC
Q 003372 364 EVAKDIFALNAAQFYKIN 381 (825)
Q Consensus 364 ~~~~~Il~~NA~rly~L~ 381 (825)
+.+-.++..|.+++|+++
T Consensus 430 eei~~mtT~nPAKiLGL~ 447 (541)
T cd01304 430 YEIAIMTRAGPAKLLGLS 447 (541)
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 346777889999999995
No 113
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=38.07 E-value=4.9e+02 Score=29.75 Aligned_cols=125 Identities=24% Similarity=0.226 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhCCC----CCcCCchhhhhHHHHHHHHHHhhCCCcEEEeeCCCCCCCC---C-CCCChhchHHHHhhcCC
Q 003372 189 DAEEGLAEDLRSGK----PVRITNKSLIDYIFISSLEVAQFLDLPLQIHTGFGDKDLD---L-RLSNPLHLRAILEDKRF 260 (825)
Q Consensus 189 ea~~~~~r~l~~~~----~~~~~~~~l~d~~l~~l~e~~~e~glpvq~H~G~gd~~~~---~-~~~~P~~L~~l~~~~~~ 260 (825)
++++.++++...+. ..+..........+..+.+++.++|+|+++|......... . .-..|. ..+.+.+..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~v~iH~~E~~~e~~~~~~~~g~~~~--~~~~~~g~l 246 (421)
T COG0402 169 ETEELLREAHGLGRDVVGLAPHFPYTVSPELLESLDELARKYGLPVHIHLAETLDEVERVLEPYGARPV--ERLDLLGLL 246 (421)
T ss_pred HHHHHHHHHhcCCCeeEEEecCCCCCCCHHHHHHHHHHHhcCCCceEEEecCcHHHHHHHHhhcCCCHH--HHHHHcCCC
Confidence 36666677666531 1111111222334566677777999999999987532111 1 112222 222222223
Q ss_pred CCcEEEEeCCCCchHHHHHHHHHh------CC--eeeeccccccCcccHHHHHHHHHHHHHHCCCCcEEEecCCCCC
Q 003372 261 SKCRFVLLHASYPFSKEASYLAYV------YP--QVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYAS 329 (825)
Q Consensus 261 P~l~ivl~H~g~p~~~e~~~la~~------~p--NVyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~ 329 (825)
- -+.+++|+-+....+...++.. +| |.++..+ .+| +..+++.+ =++..|||+...
T Consensus 247 ~-~~~~~~H~~~~~~~e~~~l~~~g~~v~~cP~sN~~L~sG-~~p----------~~~~~~~g--v~v~~gTD~~~~ 309 (421)
T COG0402 247 G-SHTLLAHCVHLSEEELELLAESGASVVHCPRSNLKLGSG-IAP----------VRRLLERG--VNVALGTDGAAS 309 (421)
T ss_pred C-CCeEEEEeccCCHHHHHHHhhCCCeEEECcchhccccCC-CCC----------HHHHHHcC--CCEEEecCCccc
Confidence 2 5689999965555566556522 22 6666655 333 23333433 678899997554
No 114
>PRK06687 chlorohydrolase; Validated
Probab=35.49 E-value=2.1e+02 Score=32.71 Aligned_cols=106 Identities=21% Similarity=0.184 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHhhCCCcEEEeeCCCCCCCCC----CCCChhchHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCee
Q 003372 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQV 288 (825)
Q Consensus 213 d~~l~~l~e~~~e~glpvq~H~G~gd~~~~~----~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pNV 288 (825)
+..+..+++.+.++|+++++|.+........ .-..|. ..+.+- .+-+-++++.|+.+.-..+...++..--+|
T Consensus 195 ~e~l~~~~~~A~~~g~~i~~H~~e~~~e~~~~~~~~g~~~~--~~l~~~-g~l~~~~~~~H~~~~~~~~~~~la~~g~~v 271 (419)
T PRK06687 195 RDLLEASLEMAKELNIPLHVHVAETKEESGIILKRYGKRPL--AFLEEL-GYLDHPSVFAHGVELNEREIERLASSQVAI 271 (419)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHCcCHH--HHHHHc-CCCCCCeEEEEEecCCHHHHHHHHHcCCeE
Confidence 3356777889999999999999754211000 011221 112221 233457888999766555666666532222
Q ss_pred eeccccccCcccHHHHHHHHHHHHHHCCCCcEEEecCC
Q 003372 289 YLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDA 326 (825)
Q Consensus 289 yld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~ 326 (825)
-..+.. +.....|+ .-++++++.+ -++-+|||+
T Consensus 272 ~~~P~s--n~~l~~g~-~p~~~~~~~G--v~v~lGtD~ 304 (419)
T PRK06687 272 AHNPIS--NLKLASGI-APIIQLQKAG--VAVGIATDS 304 (419)
T ss_pred EECcHH--hhhhccCC-CcHHHHHHCC--CeEEEeCCC
Confidence 221110 00000111 1345555543 367899996
No 115
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=35.48 E-value=77 Score=30.23 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=12.9
Q ss_pred cceeeeeecccCCCCCCC
Q 003372 167 VGLKSIAAYRSGLEINPH 184 (825)
Q Consensus 167 vgfks~~ay~~Gl~~~~~ 184 (825)
.|||+|++.|.--+....
T Consensus 26 ~GiktVIdlR~~~E~~~~ 43 (135)
T TIGR01244 26 LGFKTVINNRPDREEESQ 43 (135)
T ss_pred CCCcEEEECCCCCCCCCC
Confidence 479999999876554433
No 116
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=34.93 E-value=6.1e+02 Score=29.18 Aligned_cols=111 Identities=15% Similarity=0.141 Sum_probs=63.6
Q ss_pred HHHHHHHHHhhCCCc-EEEeeCCCCCCCCCC--CCCh-hchHHHHhhcCCCCcEEEEeCCCC------chHHHHHHHHHh
Q 003372 215 IFISSLEVAQFLDLP-LQIHTGFGDKDLDLR--LSNP-LHLRAILEDKRFSKCRFVLLHASY------PFSKEASYLAYV 284 (825)
Q Consensus 215 ~l~~l~e~~~e~glp-vq~H~G~gd~~~~~~--~~~P-~~L~~l~~~~~~P~l~ivl~H~g~------p~~~e~~~la~~ 284 (825)
.+..-++.|+++|.+ |.+|+|......... +.+- ..|..++. +-.+++|++=+++. ....++..+...
T Consensus 219 ~~~~eL~rA~~LGa~~VV~HPGs~~~~~~~ee~i~~i~e~L~~~la--~~~gV~IlLENmag~g~~lG~~~eeL~~Iid~ 296 (413)
T PTZ00372 219 AFLDDLQRCEQLGIKLYNFHPGSTVGQCSKEEGIKNIADCINKAHE--ETKSVIIVLENTAGQKNSVGSKFEDLRDIIAL 296 (413)
T ss_pred HHHHHHHHHHHcCCCEEEECCCcCCCCCCHHHHHHHHHHHHHHHHh--CcCCCEEEEecCCCCCCcccCCHHHHHHHHHh
Confidence 455567889999997 899999842110000 0000 13445544 34568888876521 123455566543
Q ss_pred C---C--eeeeccccccC---cc-cHHHHHHHHHHHHHHCCCCcE--EEecCCC
Q 003372 285 Y---P--QVYLDFGLAIP---KL-SVQGMISSIKELLELAPTKKV--MFSTDAY 327 (825)
Q Consensus 285 ~---p--NVyld~s~~~~---~~-~~~g~~~~l~~~le~~~~~ki--lfgSD~~ 327 (825)
. + .|-+|++-.+. +. ++.++...+.++-+..|+++| |=..|+.
T Consensus 297 v~~~~rlGvCLDTcHafaAGydl~t~e~~~~~l~~f~~~iGl~rL~~vHLNDSk 350 (413)
T PTZ00372 297 VEDKSRVGVCLDTCHLFAAGYDIRTKESFDKVMKEFDEIVGLKYLKAVHLNDSK 350 (413)
T ss_pred cCCcCCeEEEEEHHHHHhcCCCCCcHHHHHHHHHHHHHhcChhheeEEEEEcCC
Confidence 3 3 36678876541 11 234666677776677787876 4677764
No 117
>PTZ00124 adenosine deaminase; Provisional
Probab=34.59 E-value=1.5e+02 Score=33.46 Aligned_cols=84 Identities=12% Similarity=0.139 Sum_probs=48.8
Q ss_pred cHHHHHHHHHHHHHhhcc---cccceeeeeecccCCCCCCCCCHHHHHHHHHHHHhCC---CCCcCCchhhhhHHHHHHH
Q 003372 147 TLDVFIETFLKQLRSAAN---KIVGLKSIAAYRSGLEINPHVTKKDAEEGLAEDLRSG---KPVRITNKSLIDYIFISSL 220 (825)
Q Consensus 147 ~~~~~~~al~~~l~~~~~---~~vgfks~~ay~~Gl~~~~~~~~~ea~~~~~r~l~~~---~~~~~~~~~l~d~~l~~l~ 220 (825)
+++++++++.+.++.+.. .-+..+-|.|..... +++.+.+.++-++.-. .+..+...+.....+.+++
T Consensus 139 ~~~~vv~av~~g~~~a~~~~~~gI~~~lI~~~~R~~------~~e~a~e~~~~a~~~~~~vvGiDLaG~E~~~~~f~~~f 212 (362)
T PTZ00124 139 DIDLIHQAIVKGIKEAVELLDHKIEVGLLCIGDTGH------DAAPIKESADFCLKHKADFVGFDHAGHEVDLKPFKDIF 212 (362)
T ss_pred CHHHHHHHHHHHHHHHHhccCCCceEeEEEEecCCC------CHHHHHHHHHHHHhccCCeEEEeccCCCCCcHHHHHHH
Confidence 467777777776665421 223466666653332 3455555555554421 1112222222223478899
Q ss_pred HHHhhCCCcEEEeeCC
Q 003372 221 EVAQFLDLPLQIHTGF 236 (825)
Q Consensus 221 e~~~e~glpvq~H~G~ 236 (825)
+.|.+.|+++.+|.|-
T Consensus 213 ~~Ar~~Gl~~t~HaGE 228 (362)
T PTZ00124 213 DYVREAGVNLTVHAGE 228 (362)
T ss_pred HHHHHCCCCEEEEeCC
Confidence 9999999999999996
No 118
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=33.84 E-value=2.9e+02 Score=31.58 Aligned_cols=107 Identities=18% Similarity=0.165 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHhhCCCcEEEeeCCCCCCCCC----CCCChhchHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCee
Q 003372 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQV 288 (825)
Q Consensus 213 d~~l~~l~e~~~e~glpvq~H~G~gd~~~~~----~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pNV 288 (825)
+..+..+++.+.++|+|+++|.+.+...... .-..|. ..+.+-.+-+-++++.|+.+--..++..++.. ++
T Consensus 188 ~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g~~~~---~~l~~~G~l~~~~~~~H~~~l~~~~l~~la~~--g~ 262 (424)
T PRK08393 188 LALLKWVREKAREWNKLITIHLSETMDEIKQIREKYGKSPV---VLLDEIGFLNEDVIAAHGVWLSSRDIRILASA--GV 262 (424)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCcCHH---HHHHHcCCCCCCcEEEEeecCCHHHHHHHHhc--CC
Confidence 4466778889999999999999754211000 001232 12221122345788899854333444445432 33
Q ss_pred eeccccccCcccHHHHHHHHHHHHHHCCCCcEEEecCCC
Q 003372 289 YLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (825)
Q Consensus 289 yld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (825)
++...-..+.....|+ ..++++++.+ -++.+|||+.
T Consensus 263 ~v~~~P~sn~~lg~g~-~~~~~~~~~G--v~v~lGtD~~ 298 (424)
T PRK08393 263 TVAHNPASNMKLGSGV-MPLRKLLNAG--VNVALGTDGA 298 (424)
T ss_pred EEEECHHHHHhhccCC-CCHHHHHHCC--CcEEEecCCC
Confidence 3332211110000111 1245555544 6888999964
No 119
>PRK06361 hypothetical protein; Provisional
Probab=33.74 E-value=3e+02 Score=28.04 Aligned_cols=96 Identities=16% Similarity=0.125 Sum_probs=53.8
Q ss_pred EEEeCCCCchHHHHHHHHHhCCeeeeccccccCcccHHHHHHHHHHHHHHCCCCcEEEecCCCCCcchhhhhHHHHHHHH
Q 003372 265 FVLLHASYPFSKEASYLAYVYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVV 344 (825)
Q Consensus 265 ivl~H~g~p~~~e~~~la~~~pNVyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~r~~l 344 (825)
-|++|+++.. .+.+..+ .-.++|+++...-. . ...-...++.+.+. +. +++.|||++ -|+... . ++
T Consensus 115 dvlaHpd~~~-~~~~~~~-~~~~~~lEin~~~~-~-~~~~~~~l~~a~~~-gi-~vv~~SDaH-~~~d~~-~---~~--- 180 (212)
T PRK06361 115 DILAHPGLIT-EEEAELA-AENGVFLEITARKG-H-SLTNGHVARIAREA-GA-PLVINTDTH-APSDLI-T---YE--- 180 (212)
T ss_pred cEecCcchhh-HHHHHHH-HHcCeEEEEECCCC-c-ccchHHHHHHHHHh-CC-cEEEECCCC-CHHHHH-H---HH---
Confidence 6789997643 3444333 23478888754111 1 11112344444444 53 489999988 564321 1 21
Q ss_pred HHHHHhhhcCCCCChHHHHHHHHHHHHHhHHHHhcC
Q 003372 345 FSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKI 380 (825)
Q Consensus 345 ~~~l~~~v~~g~l~~~~a~~~~~~Il~~NA~rly~L 380 (825)
.+....++..++. +.+.+++-.|.+++++.
T Consensus 181 --~~~~i~~~~gl~~----~~v~~~~~~~~~~~~~~ 210 (212)
T PRK06361 181 --FARKVALGAGLTE----KELEEALENNPKLLLKR 210 (212)
T ss_pred --HHHHHHcCCCCCH----HHHHHHHHHhHHHHHHh
Confidence 2222334456664 57899999999998763
No 120
>KOG4127 consensus Renal dipeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=33.43 E-value=1.3e+02 Score=33.48 Aligned_cols=68 Identities=10% Similarity=0.069 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHCCCCcEEEecCCCC---CcchhhhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhHHHHhc
Q 003372 303 GMISSIKELLELAPTKKVMFSTDAYA---SPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYK 379 (825)
Q Consensus 303 g~~~~l~~~le~~~~~kilfgSD~~~---~P~~~~~~~~~~r~~l~~~l~~~v~~g~l~~~~a~~~~~~Il~~NA~rly~ 379 (825)
.....+..+.+.+|.+.|-+|.|--+ +|..--.-++| -.. +.+..+++.+. + |.+. ++++|-.|+|+
T Consensus 320 ~v~~Hi~hIr~VaG~~hIGlGg~yDGi~~~PkGLEDVSkY-P~L----iaeLl~r~~~~-~---E~~~-l~g~N~LRV~~ 389 (419)
T KOG4127|consen 320 DVADHINHIRAVAGIDHIGLGGDYDGIPRVPKGLEDVSKY-PDL----IAELLERGWWE-E---ELIG-LAGGNLLRVFR 389 (419)
T ss_pred HHHHHHHHHHHhhccceeeccCCcCCcCCCCcchhhhhhh-HHH----HHHHHhcCCcH-H---HHHH-HhcchHHHHHH
Confidence 44567888888999999999997222 22110000111 222 34444555444 2 3444 99999999997
Q ss_pred C
Q 003372 380 I 380 (825)
Q Consensus 380 L 380 (825)
-
T Consensus 390 ~ 390 (419)
T KOG4127|consen 390 Q 390 (419)
T ss_pred H
Confidence 4
No 121
>PRK09237 dihydroorotase; Provisional
Probab=33.39 E-value=7.3e+02 Score=27.76 Aligned_cols=129 Identities=19% Similarity=0.194 Sum_probs=60.8
Q ss_pred HHhhCCCcEEEeeCCCCCCCCCCCCChhchHHHHhhcCCCCcEEEEeCC--CCc---hH------HHHHHHHHhCCeeee
Q 003372 222 VAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHA--SYP---FS------KEASYLAYVYPQVYL 290 (825)
Q Consensus 222 ~~~e~glpvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~--g~p---~~------~e~~~la~~~pNVyl 290 (825)
++++.|+|+.+|++-.. .....|..+++ ++ .++.|+ +.+ .. .++... .-.++|+
T Consensus 176 ~a~~~g~~v~~H~~~~~-------~~~~~l~~~l~----~g--~~~~H~~~~~~~~~~~~~~~~~~~a~~~--l~~G~~~ 240 (380)
T PRK09237 176 IAAEANLPLMVHIGNPP-------PSLEEILELLR----PG--DILTHCFNGKPNRILDEDGELRPSVLEA--LERGVRL 240 (380)
T ss_pred HHHhcCCCEEEEcCCCC-------CCHHHHHhhcc----CC--CEEEecCCCCCCCccCCCCcchHHHHHH--HHCCEEE
Confidence 34589999999987431 12233444444 22 256888 222 00 111111 1248898
Q ss_pred ccccccCcccHHHHHHHHHHHHHHCCCCcEEEecCCCCCcchhhhhH-HHHHHHHHHHHHhhhcCCCCChHHHHHHHHHH
Q 003372 291 DFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGA-KRAREVVFSVLRDTCIDEDLSVGEAIEVAKDI 369 (825)
Q Consensus 291 d~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~-~~~r~~l~~~l~~~v~~g~l~~~~a~~~~~~I 369 (825)
+++.-.... .+. ....+++.. .....++||.+ |...+... ....+.+ ...++ ..++. +.+-+.
T Consensus 241 ~ig~g~~~~---~~~-~~~~l~~~g-~~~~~l~tD~~--~~~~~~~~~~~l~~~~----~~~~~-~g~~~----~~al~~ 304 (380)
T PRK09237 241 DVGHGTASF---SFK-VAEAAIAAG-ILPDTISTDIY--CRNRINGPVYSLATVM----SKFLA-LGMPL----EEVIAA 304 (380)
T ss_pred EecCCCCcc---cHH-HHHHHHHCC-CCceEEECCCC--CCCcccchHhHHHHHH----HHHHH-hCCCH----HHHHHH
Confidence 875211001 111 223344332 22226899953 32100011 1122333 22232 24665 356677
Q ss_pred HHHhHHHHhcCC
Q 003372 370 FALNAAQFYKIN 381 (825)
Q Consensus 370 l~~NA~rly~L~ 381 (825)
...|++++|+++
T Consensus 305 aT~n~A~~lgl~ 316 (380)
T PRK09237 305 VTKNAADALRLP 316 (380)
T ss_pred HHHHHHHHcCCC
Confidence 788999999984
No 122
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=33.35 E-value=1.1e+02 Score=25.93 Aligned_cols=63 Identities=11% Similarity=0.097 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhCCCCeeeeecCCCCCceEEecCcChHHHHHHHHHHHHHHHHHHHHHCCCeEEec
Q 003372 566 PVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFV 631 (825)
Q Consensus 566 ~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~r~~i~~iA~~~Gl~AtF~ 631 (825)
-++..+.+.|.+.|++|.....=.-.|+|-+.+...-+ .+..-.+++.++.+|++.|+.++.+
T Consensus 13 GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~---~~~~~~l~~~l~~~~~~~~l~i~v~ 75 (77)
T cd04893 13 GILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS---WDAIAKLEAALPGLARRLDLTLMMK 75 (77)
T ss_pred hHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec---cccHHHHHHHHHHHHHHcCCEEEEE
Confidence 48889999999999999998888888888776665533 1356678899999999999988754
No 123
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=32.84 E-value=28 Score=31.31 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=21.5
Q ss_pred HHHHhCCCCeeeeecCCCCCceEEecCc
Q 003372 573 ADLHSLNISVEQLHAEAGKGQFEIALGH 600 (825)
Q Consensus 573 ~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~ 600 (825)
+...++|=+||++.-+ +||||||||.-
T Consensus 52 de~~a~ge~ietIrI~-~pG~YeiNl~~ 78 (112)
T COG3364 52 DEDGAQGEPIETIRIL-RPGVYEINLES 78 (112)
T ss_pred chhhcccCcceEEEEe-cCceEEEehhh
Confidence 4455677789998887 79999999854
No 124
>COG3572 GshA Gamma-glutamylcysteine synthetase [Coenzyme metabolism]
Probab=31.04 E-value=80 Score=35.49 Aligned_cols=45 Identities=27% Similarity=0.286 Sum_probs=36.6
Q ss_pred ecCCCCCceEEecCcCh-HHHHHHHHHHHHHHHHHHHHHCCCeEEec
Q 003372 586 HAEAGKGQFEIALGHTV-AAKAADNLIFTREVLRAVARKHGLLATFV 631 (825)
Q Consensus 586 h~E~~pGQ~Ei~l~~~~-~l~aaD~~~~~r~~i~~iA~~~Gl~AtF~ 631 (825)
-=|.| ||||++-.|.+ ..+++-..-.--.+||++|..-|+...++
T Consensus 92 slEpg-gq~Elsgapletihq~~~e~n~hlavlr~~a~~~gl~fvGl 137 (456)
T COG3572 92 SLEPG-GQFELSGAPLETIHQTCGEMNQHLAVLREIAAELGLGFVGL 137 (456)
T ss_pred EeccC-ceEEecCCchHHHHHHHHHHHHHHHHHHHHHHhcCCceEee
Confidence 34666 99999999985 55667777777889999999999988764
No 125
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=30.27 E-value=3.6e+02 Score=30.50 Aligned_cols=106 Identities=21% Similarity=0.184 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhCCCcEEEeeCCCCCCCCC----------------------CCCChhchHHHHhhcCCCCcEEEEeCCCC
Q 003372 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDL----------------------RLSNPLHLRAILEDKRFSKCRFVLLHASY 272 (825)
Q Consensus 215 ~l~~l~e~~~e~glpvq~H~G~gd~~~~~----------------------~~~~P~~L~~l~~~~~~P~l~ivl~H~g~ 272 (825)
.+..+.+.|.++|+|+++|...+..+... .-..|. +.+.+. .+-+-++++.|+.+
T Consensus 164 ~l~~~~~lA~~~g~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~g~~pv--~~l~~~-g~L~~~~~~~H~~~ 240 (381)
T cd01312 164 LAQDLIDLAKKLNLPLSTHFLESKEEREWLEESKGWFKHFWESFLKLPKPKKLATAI--DFLDML-GGLGTRVSFVHCVY 240 (381)
T ss_pred HHHHHHHHHHHcCCeEEEEecCcHHHHHHHHHhccchhhHhhhhcccccccCCCCHH--HHHHHc-CCCCCCcEEEECCc
Confidence 56667888999999999998754211100 011232 222221 23345789999976
Q ss_pred chHHHHHHHHHhCCeeeeccccccCcccHHHHHHHHHHHHHHCCCCcEEEecCCCC
Q 003372 273 PFSKEASYLAYVYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYA 328 (825)
Q Consensus 273 p~~~e~~~la~~~pNVyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~ 328 (825)
--..++..++..--.|-..+. .+.....| ..-++++++.+ -++.+|||+..
T Consensus 241 l~~~~~~~l~~~g~~v~~~P~--sn~~lg~g-~~p~~~~~~~G--v~v~lGtD~~~ 291 (381)
T cd01312 241 ANLEEAEILASRGASIALCPR--SNRLLNGG-KLDVSELKKAG--IPVSLGTDGLS 291 (381)
T ss_pred CCHHHHHHHHHcCCeEEECcc--hhhhhcCC-CcCHHHHHHCC--CcEEEeCCCCc
Confidence 555566666654222222111 11000001 12345555543 47889999643
No 126
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=30.07 E-value=60 Score=28.64 Aligned_cols=61 Identities=15% Similarity=0.143 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHhCCCCeeeeecCCCCCceEEecCcChHHHHHHHHHHHHHHHHHHHHHCCCeEEe
Q 003372 565 SPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATF 630 (825)
Q Consensus 565 ~~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~~~l~aaD~~~~~r~~i~~iA~~~Gl~AtF 630 (825)
...+..+.+.+.+.|++++-+..|+--..--+.+-+. ||.-+-||+++|.+++.++.++=+
T Consensus 25 ~~al~~c~~~~~~~~L~m~lvd~e~~~D~~k~~fyy~-----a~~rvDFR~Lvr~L~~~f~~RIem 85 (88)
T PF04468_consen 25 EEALKFCRELVKELGLPMKLVDVEYQFDGSKLTFYYT-----AESRVDFRELVRDLAREFKTRIEM 85 (88)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEEEEcCCCEEEEEEE-----eCCcCcHHHHHHHHHHHhCceEEE
Confidence 5678888888999999999999999877777777777 888899999999999999988643
No 127
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=29.58 E-value=8.4e+02 Score=27.32 Aligned_cols=140 Identities=14% Similarity=0.027 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHhhCCCcEEEeeCCCCCCCCCCCCChhchHHHHhhcCCCCcEEEEeCCCCch-----H-----HHHHHHH
Q 003372 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPF-----S-----KEASYLA 282 (825)
Q Consensus 213 d~~l~~l~e~~~e~glpvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~-----~-----~e~~~la 282 (825)
+..+....+.+.++|+|+.+|++.+... ...+.++++ ++ .++.|+.+.. . .+....+
T Consensus 172 ~~~l~~~~~~A~~~g~~v~iH~~e~~~~-------~~~~~~~l~----~g--~~~~H~~~~~~~~~~~~~~~~~~~~~~~ 238 (379)
T PRK12394 172 LKPLTETLRIANDLRCPVAVHSTHPVLP-------MKELVSLLR----RG--DIIAHAFHGKGSTILTEEGAVLAEVRQA 238 (379)
T ss_pred hHHHHHHHHHHHHcCCCEEEEeCCCCcc-------HHHHHHhcC----CC--CEEEecCCCCCCCcCCCCCCChHHHHHH
Confidence 3356667788899999999999753210 111222332 22 2567773311 1 1122222
Q ss_pred HhCCeeeeccccccCcccHHHHHHHHHHHHHHCCCCcEEEecCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCChHHH
Q 003372 283 YVYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEA 362 (825)
Q Consensus 283 ~~~pNVyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~r~~l~~~l~~~v~~g~l~~~~a 362 (825)
...++++|...-. +...+ ..+..+++.+ .-..++|||........+. ..... .++...+. ..++..
T Consensus 239 -~~~G~~~~~~~g~---s~~~~-~~~~~~l~~G-~~~~~lgTD~~~~~~~~~~-~~~l~----~~~~~~~~-~~~~~~-- 304 (379)
T PRK12394 239 -RERGVIFDAANGR---SHFDM-NVARRAIANG-FLPDIISSDLSTITKLAWP-VYSLP----WVLSKYLA-LGMALE-- 304 (379)
T ss_pred -HhCCeEEEecCCc---cccch-HHHHHHHHCC-CCceEEECCCCCCCcccCc-cchHH----HHHHHHHH-cCCCHH--
Confidence 2345777654311 11111 2334555433 2244789997553321111 01112 23333333 347764
Q ss_pred HHHHHHHHHHhHHHHhcCC
Q 003372 363 IEVAKDIFALNAAQFYKIN 381 (825)
Q Consensus 363 ~~~~~~Il~~NA~rly~L~ 381 (825)
.+=+..-.|++++++++
T Consensus 305 --~~~~~at~~~a~~~g~~ 321 (379)
T PRK12394 305 --DVINACTHTPAVLMGMA 321 (379)
T ss_pred --HHHHHHHHHHHHHhCCC
Confidence 33445567888889985
No 128
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=29.21 E-value=7.5e+02 Score=28.32 Aligned_cols=107 Identities=13% Similarity=0.149 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHhhCCCcEEEeeCCCCCCCCC----CCCChhchHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCee
Q 003372 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQV 288 (825)
Q Consensus 213 d~~l~~l~e~~~e~glpvq~H~G~gd~~~~~----~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pNV 288 (825)
+..+..+.+.+.++|+++++|...+....+. .-..| +..+.+. ...+-++++.|+.+--..++..++.. ++
T Consensus 198 ~~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~~~~g~~~--~~~l~~~-g~~~~~~~l~H~~~~~~~~~~~~~~~--g~ 272 (445)
T PRK07228 198 EELLRGVRDLADEYGVRIHTHASENRGEIETVEEETGMRN--IHYLDEV-GLTGEDLILAHCVWLDEEEREILAET--GT 272 (445)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhCCCH--HHHHHHC-CCCCCCcEEEEEecCCHHHHHHHHHc--CC
Confidence 3356677888999999999999643111100 00112 2222221 23355889999965443444444433 23
Q ss_pred eeccccccCcccHHHHHHHHHHHHHHCCCCcEEEecCCC
Q 003372 289 YLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (825)
Q Consensus 289 yld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (825)
.+-..-..+.....++ ..++++++.+ -++.+|||+.
T Consensus 273 ~v~~~P~~~~~~~~~~-~p~~~~~~~G--v~v~lGtD~~ 308 (445)
T PRK07228 273 HVTHCPSSNLKLASGI-APVPDLLERG--INVALGADGA 308 (445)
T ss_pred eEEEChHHhhhccccc-CcHHHHHHCC--CeEEEcCCCC
Confidence 3321111110000111 2355555543 4677999954
No 129
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=29.12 E-value=1.8e+02 Score=33.59 Aligned_cols=106 Identities=14% Similarity=0.083 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhhCCCcEEEeeCCCCCCCCC---CC-CChhchHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCeee
Q 003372 214 YIFISSLEVAQFLDLPLQIHTGFGDKDLDL---RL-SNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVY 289 (825)
Q Consensus 214 ~~l~~l~e~~~e~glpvq~H~G~gd~~~~~---~~-~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pNVy 289 (825)
..+..+.+++.++|+|+++|.+.+...... .+ ..| ++.+.+. .+=+-++++.|+.+.-..+...++..--+|-
T Consensus 205 ~~l~~~~~lA~~~g~~i~~H~~E~~~e~~~~~~~~g~~~--v~~l~~~-Gll~~~~~~~H~~~~~~~d~~~la~~g~~v~ 281 (442)
T PRK07203 205 ATLEKCREAVKETGRGYHIHVAEGIYDVSDSHKKYGKDI--VERLADF-GLLGEKTLAAHCIYLSDEEIDLLKETDTFVV 281 (442)
T ss_pred HHHHHHHHHHHHcCCcEEEEecCChHHHHHHHHHcCCCH--HHHHHhC-CCCCCCcEEEEeecCCHHHHHHHHhcCCeEE
Confidence 467778899999999999999875321110 01 123 2222221 2335578899996655556666665432332
Q ss_pred eccccccCcccHHHHHHHHHHHHHHCCCCcEEEecCCC
Q 003372 290 LDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (825)
Q Consensus 290 ld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (825)
..+.. +.....|. .-+.++++.+. ++-.|||+.
T Consensus 282 ~~P~s--n~~l~~g~-~p~~~~~~~Gv--~v~lGtD~~ 314 (442)
T PRK07203 282 HNPES--NMGNAVGY-NPVLEMIKNGI--LLGLGTDGY 314 (442)
T ss_pred ECchh--hhhcccCC-CCHHHHHHCCC--eEEEcCCCC
Confidence 22211 00000011 12445555442 477999964
No 130
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=28.92 E-value=75 Score=26.59 Aligned_cols=47 Identities=21% Similarity=0.383 Sum_probs=35.8
Q ss_pred HHHHHHHHhCCCCeeeeecCCCCCceEEecCcC--hHHHHHHHHHHHHHHHHHHHHHCCC
Q 003372 569 QEVLADLHSLNISVEQLHAEAGKGQFEIALGHT--VAAKAADNLIFTREVLRAVARKHGL 626 (825)
Q Consensus 569 ~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~l~~~--~~l~aaD~~~~~r~~i~~iA~~~Gl 626 (825)
+++.+.|+.+|+.++.. ..+.+++..++- |....+| ++.+||+-||+
T Consensus 22 ~~i~~~L~~lg~~~~~~----~~~~~~v~vP~~R~Di~~~~D-------liEEiaR~yGY 70 (70)
T PF03484_consen 22 EEIIKILKRLGFKVEKI----DGDTLEVTVPSYRFDIEHEED-------LIEEIARIYGY 70 (70)
T ss_dssp HHHHHHHHHTT-EEEE-----CTTEEEEEEETTSTT-SSHHH-------HHHHHHHHHTG
T ss_pred HHHHHHHHHCCCEEEEC----CCCEEEEEcCCCcCCcCcccH-------HHHHHHHHhCC
Confidence 67889999999999886 677899988884 6666666 67888888885
No 131
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=28.36 E-value=8.4e+02 Score=26.92 Aligned_cols=134 Identities=19% Similarity=0.221 Sum_probs=72.6
Q ss_pred HHHHHhhCCCcEEEeeCCCCCCCCCCCCChhchHHHHhhcCCCCcEEEEeCC--CCchH---HH--H---HHHHHhCCee
Q 003372 219 SLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHA--SYPFS---KE--A---SYLAYVYPQV 288 (825)
Q Consensus 219 l~e~~~e~glpvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~--g~p~~---~e--~---~~la~~~pNV 288 (825)
..+++...++||++|.|.. |...+++++ ++..-.|+ .|| |.|.. .+ . ...| .-.-|
T Consensus 177 a~~ia~~~klPlmvHigeP----------p~~~dEvle--rL~~GDIi-tHcfngkpn~~l~~dg~vr~~vrra-~erGV 242 (386)
T COG3964 177 ALRIANDLKLPLMVHIGEP----------PVLMDEVLE--RLRRGDII-THCFNGKPNTILTDDGVVRAEVRRA-RERGV 242 (386)
T ss_pred HHHHHhhcCCceEEecCCC----------CccHHHHHH--hccCCcee-eeeccCCCCCccccchhHHHHHHHH-Hhcce
Confidence 3567788999999999953 445677877 55444443 666 44432 11 1 1112 22468
Q ss_pred eeccccccCcccHHHHHHHHHHHHHHCCCCcEEEecCCCCCcchhhhhHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHH
Q 003372 289 YLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKD 368 (825)
Q Consensus 289 yld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~~~P~~~~~~~~~~r~~l~~~l~~~v~~g~l~~~~a~~~~~~ 368 (825)
-+|.+---...+. ..-+.++..+- =-...+||-+.+-...|+.... --.+.++|.- .+++. ++++.
T Consensus 243 ~fD~ghG~asfsf----~vAr~aia~Gl-lP~~ISSDlh~~~~~n~Pv~dl-a~~mSKllal-----gmpl~---~Vi~a 308 (386)
T COG3964 243 IFDAGHGRASFSF----NVARRAIANGL-LPDIISSDLHTITKLNGPVYDL-AWIMSKLLAL-----GMPLT---DVINA 308 (386)
T ss_pred EEEccCCcceeeH----HHHHHHHhcCC-CcceeeccceeeeecCchHHHH-HHHHHHHHHc-----CCcHH---HHHHH
Confidence 8988743222221 23344443332 3345699966554334443321 2234444432 46764 35555
Q ss_pred HHHHhHHHHhcCC
Q 003372 369 IFALNAAQFYKIN 381 (825)
Q Consensus 369 Il~~NA~rly~L~ 381 (825)
+ -.|++++.+++
T Consensus 309 v-T~npA~~i~l~ 320 (386)
T COG3964 309 V-THNPAVLIGLA 320 (386)
T ss_pred H-hcCHHHHhCcc
Confidence 4 47899999987
No 132
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=27.56 E-value=8.8e+02 Score=26.88 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHhCCCCCcCCchhhhhHHHHHHHHHHhhCCCcEEEeeCC
Q 003372 186 TKKDAEEGLAEDLRSGKPVRITNKSLIDYIFISSLEVAQFLDLPLQIHTGF 236 (825)
Q Consensus 186 ~~~ea~~~~~r~l~~~~~~~~~~~~l~d~~l~~l~e~~~e~glpvq~H~G~ 236 (825)
++++..+.+++..... ....+..+..+++.|.++|+|+..|...
T Consensus 142 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~iv~~A~~~gl~vasH~d~ 185 (325)
T cd01306 142 SDEEVEEAILERKARA-------AAYAPANRSELAALARARGIPLASHDDD 185 (325)
T ss_pred CHHHHHHHHHHHHHHh-------hhcCHHHHHHHHHHHHHCCCcEEEecCC
Confidence 6777777777766542 1122334678899999999999999864
No 133
>PRK06038 N-ethylammeline chlorohydrolase; Provisional
Probab=26.07 E-value=4.2e+02 Score=30.38 Aligned_cols=107 Identities=14% Similarity=0.096 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHhhCCCcEEEeeCCCCCCCCC----CCCChhchHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCee
Q 003372 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQV 288 (825)
Q Consensus 213 d~~l~~l~e~~~e~glpvq~H~G~gd~~~~~----~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pNV 288 (825)
+..+..+.+.|.++|+|+++|...+...... .-..| +..+.+ -.+-+-++++.|+.+--..+...++..- +
T Consensus 189 ~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~G~~~--i~~l~~-~g~l~~r~~~~H~~~l~~~~~~~la~~g--~ 263 (430)
T PRK06038 189 EEFLSKVKKLANKDGVGIHIHVLETEAELNQMKEQYGMCS--VNYLDD-IGFLGPDVLAAHCVWLSDGDIEILRERG--V 263 (430)
T ss_pred HHHHHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHhCCCH--HHHHHH-cCCCCCCeEEEEEecCCHHHHHHHHhcC--C
Confidence 4467778899999999999999754211000 00122 111222 1234668889999665555555555432 2
Q ss_pred eeccccccCcccHHHHHHHHHHHHHHCCCCcEEEecCCC
Q 003372 289 YLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (825)
Q Consensus 289 yld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (825)
.+-..-..+.....|. .-++.+++.+ =++.+|||+.
T Consensus 264 ~v~~~P~~n~~~~~~~-~p~~~~~~~G--v~v~lGtD~~ 299 (430)
T PRK06038 264 NVSHNPVSNMKLASGI-APVPKLLERG--VNVSLGTDGC 299 (430)
T ss_pred EEEEChHHhhhhccCC-CCHHHHHHCC--CeEEEeCCCC
Confidence 2211111110000111 1355666543 3688999953
No 134
>PRK07627 dihydroorotase; Provisional
Probab=25.09 E-value=4.7e+02 Score=30.05 Aligned_cols=82 Identities=18% Similarity=0.137 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHhhCCCcEEEeeCCCC---CCC--------CC-CCCChh-----chHHHHhhcCCCCcEEEEeCCCCchH
Q 003372 213 DYIFISSLEVAQFLDLPLQIHTGFGD---KDL--------DL-RLSNPL-----HLRAILEDKRFSKCRFVLLHASYPFS 275 (825)
Q Consensus 213 d~~l~~l~e~~~e~glpvq~H~G~gd---~~~--------~~-~~~~P~-----~L~~l~~~~~~P~l~ivl~H~g~p~~ 275 (825)
+..+..+++.+.+.|.++.+|.--.. .+. .. ..+.|. .+..++.--+.-+.++.+.|.+.+..
T Consensus 160 ~~~l~~~~~~~~~~~~~v~~H~E~~~~~~~~~~~~g~~~~~~~~~~~P~~aE~~av~r~~~la~~~~~~~hi~HvSs~~~ 239 (425)
T PRK07627 160 TQVLLRALQYASTFGFTVWLRPLDAFLGRGGVAASGAVASRLGLSGVPVAAETIALHTIFELMRVTGARVHLARLSSAAG 239 (425)
T ss_pred HHHHHHHHHHHHhcCCEEEEecCChhhhhCCCcCCCHhHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEeCCCHHH
Confidence 44566777888899999999974310 000 00 112242 22222221135578999999987666
Q ss_pred HHHHHHHHhC-Ceeeecccc
Q 003372 276 KEASYLAYVY-PQVYLDFGL 294 (825)
Q Consensus 276 ~e~~~la~~~-pNVyld~s~ 294 (825)
.++..-++.. -+|+.+++.
T Consensus 240 ~~~i~~ak~~g~~vt~Ev~p 259 (425)
T PRK07627 240 VALVRAAKAEGLPVTCDVGV 259 (425)
T ss_pred HHHHHHHHHCCCCeEEEecc
Confidence 5555544433 256666554
No 135
>cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria, the enzyme is part of histidine utilization (hut) operon.
Probab=24.77 E-value=8.2e+02 Score=27.05 Aligned_cols=24 Identities=29% Similarity=0.176 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHhhCCCcEEEeeCC
Q 003372 213 DYIFISSLEVAQFLDLPLQIHTGF 236 (825)
Q Consensus 213 d~~l~~l~e~~~e~glpvq~H~G~ 236 (825)
...+..+++.|.++|+++.+|.+.
T Consensus 192 ~~~~~~~~~~A~~~g~~v~~H~~e 215 (371)
T cd01296 192 LEQSRRILEAAKEAGLPVKIHADE 215 (371)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEcC
Confidence 446678889999999999999975
No 136
>PRK12393 amidohydrolase; Provisional
Probab=24.54 E-value=7.9e+02 Score=28.43 Aligned_cols=108 Identities=12% Similarity=-0.005 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHhhCCCcEEEeeCCCCCCCC----CCCCChhchHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCe
Q 003372 212 IDYIFISSLEVAQFLDLPLQIHTGFGDKDLD----LRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQ 287 (825)
Q Consensus 212 ~d~~l~~l~e~~~e~glpvq~H~G~gd~~~~----~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pN 287 (825)
.+..+..+.+.+.++|+|+++|.+.+..... ..-..|. + .+.+-.+-+-++++.|+.+.-..+...++..--+
T Consensus 216 ~~e~l~~~~~~a~~~g~~~~~H~~e~~~~~~~~~~~~g~~~~--~-~l~~~g~l~~~~~~~H~~~l~~~d~~~la~~g~~ 292 (457)
T PRK12393 216 PPELLREVARAARGMGLRLHSHLSETVDYVDFCREKYGMTPV--Q-FVAEHDWLGPDVWFAHLVKLDAEEIALLAQTGTG 292 (457)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHhCCCHH--H-HHHHcCCCCCCeEEEEEecCCHHHHHHHHHcCCe
Confidence 3456777889999999999999975421000 0011231 1 1111123345788999976655566666654323
Q ss_pred eeeccccccCcccHHHHHHHHHHHHHHCCCCcEEEecCCC
Q 003372 288 VYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (825)
Q Consensus 288 Vyld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (825)
|-..+.. +.....|+ ..++++++. | -++.+|||+.
T Consensus 293 v~~~P~s--n~~lg~g~-~~~~~~~~~-G-v~v~lGtD~~ 327 (457)
T PRK12393 293 IAHCPQS--NGRLGSGI-APALAMEAA-G-VPVSLGVDGA 327 (457)
T ss_pred EEECchh--hhhhcccC-CCHHHHHHC-C-CeEEEecCCc
Confidence 3222110 10000111 234555554 3 3788999953
No 137
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=24.07 E-value=1.9e+02 Score=32.35 Aligned_cols=85 Identities=14% Similarity=0.146 Sum_probs=47.7
Q ss_pred cHHHHHHHHHHHHHhhc---ccccceeeeeecccCCCCCCCCCHHHHHHHHHHHHh-----CC--CCCcCCchhh-h--h
Q 003372 147 TLDVFIETFLKQLRSAA---NKIVGLKSIAAYRSGLEINPHVTKKDAEEGLAEDLR-----SG--KPVRITNKSL-I--D 213 (825)
Q Consensus 147 ~~~~~~~al~~~l~~~~---~~~vgfks~~ay~~Gl~~~~~~~~~ea~~~~~r~l~-----~~--~~~~~~~~~l-~--d 213 (825)
+++++++++.+.++.+. +..++.+-|.|..... +.+++.+.++-+.. .. .+..+...+. . -
T Consensus 105 ~~~~v~~av~~~~~~~~~~~~~~i~v~lI~~~~R~~------~~e~~~e~~~~a~~~~~~~~~~VvGidL~G~E~~~~~~ 178 (345)
T cd01321 105 DYEETVQLLEEVVEKFKKTHPDFIGLKIIYATLRNF------NDSEIKESMEQCLNLKKKFPDFIAGFDLVGQEDAGRPL 178 (345)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCceEEEEEEecCCC------CHHHHHHHHHHHHHHHHhCCCeEEEEecCCCccCCCCH
Confidence 56777777776555432 1135566777754433 24444444433332 10 1122222221 1 2
Q ss_pred HHHHHHHHHHhhCC--CcEEEeeCCC
Q 003372 214 YIFISSLEVAQFLD--LPLQIHTGFG 237 (825)
Q Consensus 214 ~~l~~l~e~~~e~g--lpvq~H~G~g 237 (825)
..+.++++.+.+.| +++.+|.|-.
T Consensus 179 ~~f~~~f~~ar~~g~~l~~t~HAGE~ 204 (345)
T cd01321 179 LDFLPQLLWFPKQCAEIPFFFHAGET 204 (345)
T ss_pred HHHHHHHHHHHHhCCCCceEeecCCC
Confidence 25678999999999 9999999964
No 138
>PRK09236 dihydroorotase; Reviewed
Probab=23.74 E-value=1.1e+03 Score=27.12 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=19.0
Q ss_pred hhhcCCCCChHHHHHHHHHHHHHhHHHHhcCC
Q 003372 350 DTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381 (825)
Q Consensus 350 ~~v~~g~l~~~~a~~~~~~Il~~NA~rly~L~ 381 (825)
+.+.++.++.. .+-..+..|++++|+++
T Consensus 341 ~~v~~~~~~~~----~~~~~~t~~pA~~lgl~ 368 (444)
T PRK09236 341 ELVHEGKLSLE----KVVEKTSHAPAILFDIK 368 (444)
T ss_pred HHHHhcCCCHH----HHHHHHHHhHHHhcCCC
Confidence 34556778874 34445667888999984
No 139
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=23.60 E-value=3.6e+02 Score=28.89 Aligned_cols=56 Identities=16% Similarity=0.246 Sum_probs=36.2
Q ss_pred CCCCCCC-CCHHHHHHHHHHHHhC-C-CCCcCCchhhhhHHHHHHHHHHhhCCCcEEEeeCCC
Q 003372 178 GLEINPH-VTKKDAEEGLAEDLRS-G-KPVRITNKSLIDYIFISSLEVAQFLDLPLQIHTGFG 237 (825)
Q Consensus 178 Gl~~~~~-~~~~ea~~~~~r~l~~-~-~~~~~~~~~l~d~~l~~l~e~~~e~glpvq~H~G~g 237 (825)
+|.+..+ .+++++.+-..|.+++ + ....++.- ..+..+.+...+.|+||.=|.|..
T Consensus 82 DmPF~sy~~s~~~a~~nA~r~~ke~gA~aVKlEGG----~~~~~~i~~L~~~gIPV~gHiGLt 140 (268)
T COG0413 82 DLPFGSYEVSPEQALKNAARLMKEAGADAVKLEGG----EEMAETIKRLTERGIPVMGHIGLT 140 (268)
T ss_pred CCCCcccCCCHHHHHHHHHHHHHHhCCCEEEEcCC----HHHHHHHHHHHHcCCceEEEecCC
Confidence 4444444 5788888888888873 2 11122221 234556677889999999999984
No 140
>COG1550 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.49 E-value=71 Score=28.45 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=24.8
Q ss_pred ceeEEEEcCCCCcCCCChHHHHHHHHHHHHHhcCceE
Q 003372 489 MIMADMHLKPGEPWEYCPREALRKVSRLLKEEFNLVL 525 (825)
Q Consensus 489 ~v~~~~~~~~g~p~~~~pR~~L~~~~~~~~~~~g~~~ 525 (825)
.+-|++.-.+ ....---|.+||+++++++++|+++.
T Consensus 5 ~~~~~l~~~~-v~sLKeKRavlr~iv~rLk~KFnvSv 40 (95)
T COG1550 5 VLECELRLYD-VRSLKEKRAVLRPIVTRLKNKFNVSV 40 (95)
T ss_pred EEEEEEEecc-cccHHHHHHHHHHHHHHHHHhcceee
Confidence 4556655432 22234579999999999999887763
No 141
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=23.49 E-value=1.9e+02 Score=29.51 Aligned_cols=62 Identities=8% Similarity=0.071 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhCCCCeeeeecCCCCC----------ceEEecCcChHHHHHHHHHHHHHHHHHHHHHCCCeEEeccc
Q 003372 566 PVFQEVLADLHSLNISVEQLHAEAGKG----------QFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPN 633 (825)
Q Consensus 566 ~~~~~i~~~l~~~Gi~ve~~h~E~~pG----------Q~Ei~l~~~~~l~aaD~~~~~r~~i~~iA~~~Gl~AtF~pK 633 (825)
-++.++.+.|.+.||+|+.+.++..+. ++|+.++..-- +-.+|..+.++|.+.++.+++-|.
T Consensus 107 GIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~------~~~L~~~l~~l~~eL~vd~~l~~~ 178 (190)
T PRK11589 107 HLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQD------AANIEQAFKALCTELNAQGSINVV 178 (190)
T ss_pred CHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCCC------HHHHHHHHHHHHHHhCceEEEEEe
Confidence 589999999999999999999986664 45555655422 344588899999999999999887
No 142
>PRK09230 cytosine deaminase; Provisional
Probab=23.22 E-value=7.5e+02 Score=28.35 Aligned_cols=57 Identities=14% Similarity=0.071 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHhhCCCcEEEeeCCCCCCCCCCCCChhchHHHHhhcCCCCcEEEEeCCCCc
Q 003372 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYP 273 (825)
Q Consensus 213 d~~l~~l~e~~~e~glpvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p 273 (825)
...+..+++.|.++|+|+.+|.+....... .. ...+..+++...+ +-++++.|+.+-
T Consensus 194 ~e~l~~~~~~A~~~g~~~~~H~~E~~~~~~--~~-~~~~~~~~~~~gl-~~~v~~~H~~~l 250 (426)
T PRK09230 194 VESLHKAFALAQKYDRLIDVHCDEIDDEQS--RF-VETVAALAHREGM-GARVTASHTTAM 250 (426)
T ss_pred HHHHHHHHHHHHHhCCCcEEEECCCCCcch--HH-HHHHHHHHHHhCC-CCCEEEEecCch
Confidence 346788899999999999999986522111 00 1112333332223 457999999544
No 143
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.98 E-value=1.7e+02 Score=24.31 Aligned_cols=60 Identities=10% Similarity=0.026 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhCCCCeeeeecC--CCCCceEEecCcChHHHHH-HHHHHHHHHHHHHHHHCCCe
Q 003372 566 PVFQEVLADLHSLNISVEQLHAE--AGKGQFEIALGHTVAAKAA-DNLIFTREVLRAVARKHGLL 627 (825)
Q Consensus 566 ~~~~~i~~~l~~~Gi~ve~~h~E--~~pGQ~Ei~l~~~~~l~aa-D~~~~~r~~i~~iA~~~Gl~ 627 (825)
-++.+|.+.+.+.|++|..++.- ...+.|.+.+.-.-+ .. -+.-.++..+..++.+.|+.
T Consensus 11 Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~--~~~~~~~~l~~~l~~l~~~l~~~ 73 (74)
T cd04875 11 GIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELE--GFDLSREALEAAFAPVAAEFDMD 73 (74)
T ss_pred CHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeC--CCCCCHHHHHHHHHHHHHHcCCc
Confidence 48889999999999999999776 466677665554322 11 13556688888888887763
No 144
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.82 E-value=2e+02 Score=22.63 Aligned_cols=50 Identities=20% Similarity=0.169 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhCCCCeeeeecCCC--CCceEEecCcChHHHHHHHHHHHHHHHHHHHHHCCCe
Q 003372 567 VFQEVLADLHSLNISVEQLHAEAG--KGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLL 627 (825)
Q Consensus 567 ~~~~i~~~l~~~Gi~ve~~h~E~~--pGQ~Ei~l~~~~~l~aaD~~~~~r~~i~~iA~~~Gl~ 627 (825)
.+.++.+.+.+.|++|..++.... +|.-.+.+.-.+ .+.+++..+++|+.
T Consensus 12 ~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~-----------~~~~~~~L~~~G~~ 63 (65)
T cd04882 12 GLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED-----------IEKAIEVLQERGVE 63 (65)
T ss_pred HHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC-----------HHHHHHHHHHCCce
Confidence 567889999999999976654222 244444444333 22444555666764
No 145
>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=22.55 E-value=7.5e+02 Score=28.20 Aligned_cols=106 Identities=19% Similarity=0.170 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHhhCCCcEEEeeCCCCCCCCC----CCCChhchHHHHhhcCCCCcEEEEeCCCCchHHHHHHHHHhCCee
Q 003372 213 DYIFISSLEVAQFLDLPLQIHTGFGDKDLDL----RLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQV 288 (825)
Q Consensus 213 d~~l~~l~e~~~e~glpvq~H~G~gd~~~~~----~~~~P~~L~~l~~~~~~P~l~ivl~H~g~p~~~e~~~la~~~pNV 288 (825)
+..+..+.+.+.+ |+++.+|.+.+...... .-..| ++.+.+. .+-+-++++.|+.+--..++..++..--+|
T Consensus 206 ~e~l~~~~~~a~~-g~~i~~H~~e~~~e~~~~~~~~g~~~--i~~l~~~-g~l~~~~~~~H~~~l~~~~~~~la~~g~~v 281 (418)
T cd01313 206 AEQLAALAALASE-KAPVHIHLAEQPKEVDDCLAAHGRRP--VELLLDH-GHLDARWCLVHATHLTDNETLLLGRSGAVV 281 (418)
T ss_pred HHHHHHHHHHHhc-CCceEEEeCCCHHHHHHHHHHcCCCH--HHHHHHc-CCCCCCEEEEeCCCCCHHHHHHHHHcCCEE
Confidence 3456777888999 99999999754211100 01123 2223332 233567899999655445666665543333
Q ss_pred eeccccccCcccHHHHHHHHHHHHHHCCCCcEEEecCCC
Q 003372 289 YLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAY 327 (825)
Q Consensus 289 yld~s~~~~~~~~~g~~~~l~~~le~~~~~kilfgSD~~ 327 (825)
-..+..-. ....|+ .-++++++.+ =++-+|||+.
T Consensus 282 ~~~P~sn~--~lg~g~-~p~~~l~~~G--v~v~lGtD~~ 315 (418)
T cd01313 282 GLCPTTEA--NLGDGI-FPAAALLAAG--GRIGIGSDSN 315 (418)
T ss_pred EECCCchh--hccCCC-CCHHHHHHCC--CcEEEecCCC
Confidence 33222100 000111 1244555543 3788999953
No 146
>PRK06886 hypothetical protein; Validated
Probab=22.53 E-value=1e+03 Score=26.45 Aligned_cols=50 Identities=16% Similarity=0.121 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhCCCcEEEeeCCCCCCCCCCCCChhchHHHH----hhcCCCCcEEEEeCCC
Q 003372 214 YIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAIL----EDKRFSKCRFVLLHAS 271 (825)
Q Consensus 214 ~~l~~l~e~~~e~glpvq~H~G~gd~~~~~~~~~P~~L~~l~----~~~~~P~l~ivl~H~g 271 (825)
..+..++++|.++|+||.+|+..++... ...+..++ +. .+-+ ++++.|+.
T Consensus 162 e~l~~~~~lA~~~g~~Id~Hlde~~~~~------~~~le~l~~~~~~~-Gl~g-rV~~sH~~ 215 (329)
T PRK06886 162 EAMDILLDTAKSLGKMVHVHVDQFNTPK------EKETEQLCDKTIEH-GMQG-RVVAIHGI 215 (329)
T ss_pred HHHHHHHHHHHHcCCCeEEeECCCCchh------HHHHHHHHHHHHHc-CCCC-CEEEEEec
Confidence 3577889999999999999998653210 11233333 32 3544 79999983
No 147
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=22.36 E-value=1.7e+02 Score=32.28 Aligned_cols=70 Identities=19% Similarity=0.239 Sum_probs=45.3
Q ss_pred HHHHHHHhhCCCcEEEeeCCCCCCCCCCCCChhchHHHHhhcCCCCcEEEEeCC--CCchHH------HHHHHHHhCCee
Q 003372 217 ISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHA--SYPFSK------EASYLAYVYPQV 288 (825)
Q Consensus 217 ~~l~e~~~e~glpvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~--g~p~~~------e~~~la~~~pNV 288 (825)
.|+.+..++.+.||.+-||...- ..-.---.++++ .-+-.++++|| +||--. .+..|+..| |+
T Consensus 137 ~plik~iA~~~kPiIlSTGma~~------~ei~~av~~~r~--~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~ 207 (347)
T COG2089 137 LPLIKYIAKKGKPIILSTGMATI------EEIEEAVAILRE--NGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NA 207 (347)
T ss_pred hHHHHHHHhcCCCEEEEcccccH------HHHHHHHHHHHh--cCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CC
Confidence 56778888999999999996421 111112334553 33337999999 576432 345667788 88
Q ss_pred eeccccc
Q 003372 289 YLDFGLA 295 (825)
Q Consensus 289 yld~s~~ 295 (825)
-+++|--
T Consensus 208 ~vGlSDH 214 (347)
T COG2089 208 IVGLSDH 214 (347)
T ss_pred ccccccC
Confidence 8888763
No 148
>TIGR01224 hutI imidazolonepropionase. This enzyme catalyzes the third step in histidine degradation.
Probab=21.94 E-value=9e+02 Score=26.80 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhCCCcEEEeeCC
Q 003372 215 IFISSLEVAQFLDLPLQIHTGF 236 (825)
Q Consensus 215 ~l~~l~e~~~e~glpvq~H~G~ 236 (825)
.+..+++.|.++|+|+.+|.+.
T Consensus 198 ~~~~~~~~A~~~g~~v~~H~~e 219 (377)
T TIGR01224 198 QSRRILQAAQEAGLPVKLHAEE 219 (377)
T ss_pred HHHHHHHHHHHCCCCEEEEecC
Confidence 5677889999999999999974
No 149
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=21.61 E-value=1.4e+02 Score=32.43 Aligned_cols=66 Identities=14% Similarity=0.102 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhCCCCeeeeecC--CCCCceEEecCcChHHHHHHHHHHHHHHHHHHHHHCCCeEEeccc
Q 003372 566 PVFQEVLADLHSLNISVEQLHAE--AGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVPN 633 (825)
Q Consensus 566 ~~~~~i~~~l~~~Gi~ve~~h~E--~~pGQ~Ei~l~~~~~l~aaD~~~~~r~~i~~iA~~~Gl~AtF~pK 633 (825)
-++.++.+.|.+.|++|+.+... .+.|+|.+.+.-.-+ +..+.-.+|+.+..+|.+.|+.++.-+.
T Consensus 19 GIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p--~~~~~~~L~~~L~~l~~~l~l~i~i~~~ 86 (286)
T PRK13011 19 GIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE--EGLDEDALRAGFAPIAARFGMQWELHDP 86 (286)
T ss_pred CHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecC--CCCCHHHHHHHHHHHHHHhCcEEEEeec
Confidence 48899999999999999999984 678888876554311 1123677899999999999999888754
No 150
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=20.71 E-value=55 Score=36.39 Aligned_cols=70 Identities=20% Similarity=0.310 Sum_probs=38.7
Q ss_pred HHHHHHHhhCCCcEEEeeCCCCCCCCCCCCChhchHHHHhhcCCCCcEEEEeCC--CCchHHH------HHHHHHhCCee
Q 003372 217 ISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHA--SYPFSKE------ASYLAYVYPQV 288 (825)
Q Consensus 217 ~~l~e~~~e~glpvq~H~G~gd~~~~~~~~~P~~L~~l~~~~~~P~l~ivl~H~--g~p~~~e------~~~la~~~pNV 288 (825)
+|+++.+++.|+||.+=||... ...-...-+.++...-++-+|+++|| +||...+ +..|...| ++
T Consensus 123 ~pLL~~~A~~gkPvilStGmat------l~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f-~~ 195 (329)
T TIGR03569 123 APLLKKIARFGKPVILSTGMAT------LEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAF-DL 195 (329)
T ss_pred HHHHHHHHhcCCcEEEECCCCC------HHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHh-CC
Confidence 6778889999999999999641 00111111222211112125999998 4776443 33445556 34
Q ss_pred eeccc
Q 003372 289 YLDFG 293 (825)
Q Consensus 289 yld~s 293 (825)
-++.|
T Consensus 196 pVG~S 200 (329)
T TIGR03569 196 PVGYS 200 (329)
T ss_pred CEEEC
Confidence 44433
Done!