RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 003372
(825 letters)
>gnl|CDD|223252 COG0174, GlnA, Glutamine synthetase [Amino acid transport and
metabolism].
Length = 443
Score = 288 bits (739), Expect = 4e-89
Identities = 131/440 (29%), Positives = 202/440 (45%), Gaps = 40/440 (9%)
Query: 399 KKSDAFESDVSLIRVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDGPA 458
E+ V + + + D +G R + +P ++ + + S++ G
Sbjct: 6 VLKLLKENGVKFVDLRFTDLNGVLRGKTIPAEKPVSV---LAQLFEGGVVFDGSSIAG-F 61
Query: 459 DGTNLSGTGEIRLMPDLSTRWRIPWQKQEE-MIMADMHLKPGEPWEYCPREALRKVSRLL 517
+G ++ L PDLST PW++ ++ D++ G P+ PR L++ L
Sbjct: 62 EGIG---ESDMVLKPDLSTLVVDPWREGPTARVLCDVYDPDGTPYPRDPRSVLKRALARL 118
Query: 518 KEEFNLVLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVSPVFQEVLADLHS 577
K+E G E+EF+L + P D Y A D ++++ L +
Sbjct: 119 KDEGLAPAVVGPELEFFLFDRD-GRDPDGGRPADKGGYFDVAPLDEAEDFRRDIVEALEA 177
Query: 578 LNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVP----- 632
I +E +H E GQFEI L A KAAD ++ + V++ VA KHGL ATF+P
Sbjct: 178 AGIEIEAIHHEVAPGQFEINLRFDDALKAADQIVIFKYVVKEVAEKHGLTATFMPKPFFG 237
Query: 633 ----------NLW-QNGENVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVPNS 681
+LW ++G N+F D G+S F+ G+L H ++ A TAP NS
Sbjct: 238 DNGSGMHVHQSLWDKDGGNLFA--DEDGYAGLSETALHFIGGILKHAPALTAITAPTVNS 295
Query: 682 YDRIQ-PNTWSGAYQCWGKENREAPLRTACPPGVKDGVVSNFELKSFDGCANPHLGLAAI 740
Y R+ P W+ Y WG NR A +R P +G E + D ANP+L AAI
Sbjct: 296 YKRLGVPYEWAPTYIAWGVRNRSASVRI--PASGANGKARRVEFRVPDPDANPYLAFAAI 353
Query: 741 IASGIDGLRR-LCLPEPIDANPASLDG---KLQRLPTSLSESVQALEKDDILRDMIGEKL 796
+A+G+DG+ L EP+D N L K LP SL E++ ALE + LR+ +GE
Sbjct: 354 LAAGLDGIENKLEPGEPVDGNLYELSPEERKEPTLPASLREALDALEDSEFLREALGEDF 413
Query: 797 L---IAIKGIRKAEINYYSL 813
+ IA+K +AE +
Sbjct: 414 IDAYIALK---RAEWEEFRS 430
>gnl|CDD|215731 pfam00120, Gln-synt_C, Glutamine synthetase, catalytic domain.
Length = 259
Score = 229 bits (586), Expect = 2e-69
Identities = 84/265 (31%), Positives = 119/265 (44%), Gaps = 29/265 (10%)
Query: 503 EYCPREALRKVSRLLKEEFNLVLNAGFEIEFYLLKSVLREGKEEWV------PIDFTPYC 556
PR L++ L G E EF+L V G + Y
Sbjct: 1 PRDPRSILKRALARLASL-GYTPYFGPEQEFFLFDDVRPGGGPPPGGYPDPRGPYYGGYF 59
Query: 557 STAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREV 616
A D + ++++ L + I VE +H E GQ EI L A +AADNL + V
Sbjct: 60 PVAPLDEARDIRRDIVKALEAAGIPVEGIHHEVAPGQHEIDLRFADALEAADNLQLFKYV 119
Query: 617 LRAVARKHGLLATFVP---------------NLW--QNGENVFMASDSSSKHGMSSVGEK 659
++ VA KHGL ATF+P +LW ++G+N+F +D G+S
Sbjct: 120 VKRVAEKHGLTATFMPKPIFGDNGSGMHTHQSLWDRKDGKNLF--ADGDGYAGLSETARH 177
Query: 660 FMAGVLHHLSSILAFTAPVPNSYDRIQPNTWSGAYQCWGKENREAPLRTACPPGVKDGVV 719
F+ G+L H +I A+TAP NSY R+ P T + Y WG NR A +R P
Sbjct: 178 FIGGILKHAPAITAYTAPTVNSYKRLVPGTEAPVYIAWGVRNRSASIRI---PRGGGPKA 234
Query: 720 SNFELKSFDGCANPHLGLAAIIASG 744
E + D ANP+L LAA++A+G
Sbjct: 235 GRVEDRLPDPDANPYLALAALLAAG 259
>gnl|CDD|234109 TIGR03105, gln_synth_III, glutamine synthetase, type III. This
family consists of the type III isozyme of glutamine
synthetase, originally described in Rhizobium meliloti,
where types I and II also occur.
Length = 435
Score = 194 bits (496), Expect = 1e-54
Identities = 122/448 (27%), Positives = 197/448 (43%), Gaps = 67/448 (14%)
Query: 405 ESDVSLIRVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLT-FA--CMGMTSAVDGPADGT 461
+ + +VD G + ++VP + + + T G G FA +G + PAD
Sbjct: 7 DKGIKYFLASFVDLHGVQKAKLVPAEAIDHMATG-GAGFAGFAAWGLGQS-----PADP- 59
Query: 462 NLSGTGEIRLMPDLSTRWRIPWQKQEEMIMADMHLKPGEPWEYCPREALRKVSRLLKEEF 521
++ +PDL + ++PWQ + AD+H+ G+P+ PR L++ E
Sbjct: 60 ------DLMAIPDLDSLTQLPWQPGVAWVAADLHVN-GKPYPQAPRVVLKRQLAEAAEL- 111
Query: 522 NLVLNAGFEIEFYLLKSVLREGKEEWVPIDFTPYCSTAAYDAVS-----PVFQEVLADLH 576
L LN G E EF+LL+ R+ D + YD V E+ ++
Sbjct: 112 GLTLNTGVECEFFLLR---RDEDGSLSIADRADTLAKPCYDQRGLMRRYDVLTEISDAMN 168
Query: 577 SLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVP---- 632
+L Q E GQFE+ + A AD F R +++ +A KHG+ ATF+P
Sbjct: 169 ALGWDPYQNDHEDANGQFEMNFTYADALTTADRHAFFRYMVKEIAEKHGMRATFMPKPFA 228
Query: 633 -----------NLW-QNGENVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVPN 680
+LW ++G N+F + G+S + F+ G+LHH ++ A AP N
Sbjct: 229 DLTGNGCHFHLSLWDEDGRNLFADDSDPNGLGLSKLAYHFIGGILHHAPALCAVLAPTVN 288
Query: 681 SYDRIQPN------TWSGAYQCWGKENREAPLRTACPPGVKDGVVSNFELKSFDGCANPH 734
SY R+ TW+ + +G NR +R + D FEL+ DG ANP+
Sbjct: 289 SYKRLNAPRTTSGATWAPNFISYGGNNRTHMVR------IPDP--GRFELRLADGAANPY 340
Query: 735 LGLAAIIASGIDGLRRLCLP-EPIDANPAS---LDGKLQRLPTSLSESVQALEKDDILRD 790
L AAI+A+G+DG+ R P P D N + ++ LP +L E+++ALE D +L +
Sbjct: 341 LAQAAILAAGLDGIERKLDPGPPRDINLYAEELAARGVETLPQNLLEALRALEADPLLAE 400
Query: 791 MIGEKLLIAIKGIRKAEINYYSLNKDAY 818
+G + + Y
Sbjct: 401 ALG-------AEFVDEFLKLKRQEWEEY 421
>gnl|CDD|233073 TIGR00653, GlnA, glutamine synthetase, type I. Alternate name:
glutamate--ammonia ligase. This model represents the
dodecameric form, which can be subdivided into 1-alpha
and 1-beta forms. The phylogeny of the 1-alpha and
1-beta forms appears polyphyletic. E. coli,
Synechocystis PCC6803, Aquifex aeolicus, and the
crenarcheon Sulfolobus acidocaldarius have form 1-beta,
while Bacillus subtilis, Thermotoga maritima, and
various euryarchaea has form 1-alpha. The 1-beta
dodecamer from the crenarcheon Sulfolobus acidocaldarius
differs from that in E. coli in that it is not regulated
by adenylylation [Amino acid biosynthesis, Glutamate
family].
Length = 459
Score = 194 bits (495), Expect = 3e-54
Identities = 123/462 (26%), Positives = 199/462 (43%), Gaps = 74/462 (16%)
Query: 405 ESDVSLIRVIWVDASGQHRCRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTNLS 464
E +V + + + D G+ + +P + + G+ DG+++
Sbjct: 9 EENVKFVDLRFTDIKGKPQHVEIPASALDKEAFEEGIMF---------------DGSSIR 53
Query: 465 GTGEIR-----LMPDLSTRWRIPWQKQEEMIM-ADMHLKP--GEPWEYCPREALRKVSRL 516
G I L PD ST PW+ ++ + + D++ +P GEP+E PR ++
Sbjct: 54 GFQGIEESDMLLKPDPSTAVIDPWRAEKTLRVICDVY-EPFTGEPYERDPRSIAKRAEEY 112
Query: 517 LKEEFNLVLNAGFEIEFYLLKSV---------------------LREGKEEWVPIDFTPY 555
LK G E EF+L SV G + P D Y
Sbjct: 113 LKSGIGDTAYFGPEPEFFLFDSVEFGSLANGSFYEVDSEEGRWNEESGNRGYKPRDKGGY 172
Query: 556 CSTAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTRE 615
A D + +E++ L L VE H E GQ EI K AD++ +
Sbjct: 173 FPVAPTDTAVDIRREMVLYLEQLGFDVEVHHHEVATGQHEIDFKFDTLLKTADDIQTYKY 232
Query: 616 VLRAVARKHGLLATFVP---------------NLWQNGENVFMASDSSSKHGMSSVGEKF 660
V++ VARKHG ATF+P +LW++GEN+F + + G+S +
Sbjct: 233 VVKNVARKHGKTATFMPKPLFGDNGSGMHCHQSLWKDGENLFAGEEYA---GLSETALYY 289
Query: 661 MAGVLHHLSSILAFTAPVPNSYDRIQPNTWSGAYQCWGKENREAPLRTACPPGVKDGVVS 720
+ G+L H ++ AFT P NSY R+ P + Y + NR A +R P +
Sbjct: 290 IGGILKHAKALAAFTNPTVNSYKRLVPGYEAPVYLAYSARNRSALIRI---PASGNPKAK 346
Query: 721 NFELKSFDGCANPHLGLAAIIASGIDGLR-RLCLPEPIDAN-----PASLDGK-LQRLPT 773
E + D ANP+L AA++ +G+DG++ ++ EP+D N P L K + +LP
Sbjct: 347 RIEFRFPDPSANPYLAFAAMLMAGLDGIKNKIDPGEPVDKNLYELSPEELREKGIPQLPG 406
Query: 774 SLSESVQALEKD-DILRDMIGEKLLIAIKGIRKAEINYYSLN 814
SL E++ LE D + + GE+ + A +++ E + Y L
Sbjct: 407 SLEEALDELESDHLVEGGVFGEEFIEAFIELKRKEWDPYRLR 448
>gnl|CDD|218322 pfam04909, Amidohydro_2, Amidohydrolase. These proteins are
amidohydrolases that are related to pfam01979.
Length = 272
Score = 95.7 bits (238), Expect = 8e-22
Identities = 41/166 (24%), Positives = 63/166 (37%), Gaps = 21/166 (12%)
Query: 220 LEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPFSKEAS 279
E L LP+ +HTGFGD DL + PL L + RF + VL H P+ E
Sbjct: 123 FEALAELGLPVDLHTGFGDAGEDLDAAQPLLLSGLAR--RFPDLKIVLDHGGGPWIPEGL 180
Query: 280 --YLAYVYPQVYLDFGLAIPK---LSVQGMISSIKELLELAPTKKVMFSTDAYASPETYF 334
L P VY+ + S ++ EL+E +++F +D P
Sbjct: 181 RLALLARRPNVYVKLSGLGRRSGFDSPAADPPALAELIEAFGPDRILFGSDYPHPPLERP 240
Query: 335 LGAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKI 380
L A +++ + E + I NAA+ Y +
Sbjct: 241 LAALDLLDLLD--------------ALSEEEREKILGGNAARLYGL 272
>gnl|CDD|181884 PRK09469, glnA, glutamine synthetase; Provisional.
Length = 469
Score = 82.9 bits (205), Expect = 1e-16
Identities = 66/225 (29%), Positives = 102/225 (45%), Gaps = 27/225 (12%)
Query: 582 VEQLHAE-AGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVP-------- 632
VE H E A GQ E+A K AD + + V+ VA G ATF+P
Sbjct: 207 VEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAHAFGKTATFMPKPMFGDNG 266
Query: 633 -------NLWQNGENVFMASDSSSKHGMSSVGEKFMAGVLHHLSSILAFTAPVPNSYDRI 685
+L +NG N+F A D + G+S ++ G++ H +I A P NSY R+
Sbjct: 267 SGMHCHMSLSKNGVNLF-AGDKYA--GLSEQALYYIGGIIKHAKAINALANPTTNSYKRL 323
Query: 686 QPNTWSGAYQCWGKENREAPLRTACPPGVKDGVVSNFELKSFDGCANPHLGLAAIIASGI 745
P + + NR A +R K E++ D ANP+L AA++ +G+
Sbjct: 324 VPGYEAPVMLAYSARNRSASIRIPVVASPK---ARRIEVRFPDPAANPYLCFAALLMAGL 380
Query: 746 DGLRRLCLP-EPIDAN----PASLDGKLQRLPTSLSESVQALEKD 785
DG++ P E +D N P ++ ++ SL E++ AL+ D
Sbjct: 381 DGIKNKIHPGEAMDKNLYDLPPEEAAEIPQVAGSLEEALNALDAD 425
>gnl|CDD|225070 COG2159, COG2159, Predicted metal-dependent hydrolase of the
TIM-barrel fold [General function prediction only].
Length = 293
Score = 76.7 bits (189), Expect = 3e-15
Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 28/165 (16%)
Query: 220 LEVAQFLDLPLQIHTGFGDKDLDLRL--SNPLHLRAILEDKRFSKCRFVLLHA--SYPFS 275
E A+ L +P+ IHTG G L S+PL+L + ++F + + VL H YP+
Sbjct: 150 YEAAEELGVPVVIHTGAGPGGAGLEKGHSDPLYLDDVA--RKFPELKIVLGHMGEDYPWE 207
Query: 276 KEASYLAYVYPQVYLDFGLAIPKLSVQGMISSIKELLELAPTKKVMFSTDAYASPETYFL 335
EA LAY +P VYLD PK ++ +KEL K++F +D P +
Sbjct: 208 LEAIELAYAHPNVYLDTSGVRPKYFAPPLLEFLKELGP----DKILFGSD---YPAIHPE 260
Query: 336 GAKRAREVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKI 380
+ E +G + EV + I NAA+ +
Sbjct: 261 VW---------------LAELDELGLSEEVKEKILGENAARLLGL 290
>gnl|CDD|226477 COG3968, COG3968, Uncharacterized protein related to glutamine
synthetase [General function prediction only].
Length = 724
Score = 53.0 bits (127), Expect = 5e-07
Identities = 37/132 (28%), Positives = 52/132 (39%), Gaps = 13/132 (9%)
Query: 562 DAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAAKAADNLIFTREVLRAVA 621
+ VS ++V +L++L I + H E GQFEIA A D+ EVL+ A
Sbjct: 266 ERVSAFMKDVEKELYALGIPAKTRHNEVAPGQFEIAPIFESGNLATDHQQLVMEVLKKTA 325
Query: 622 RKHGLLATFVPNLWQNGENVFMASDSSSKHGMSSVGEKFMAGVL------HHLSSILAFT 675
KHGL+ E F + S KH S+G +L H L F
Sbjct: 326 LKHGLVCLL-------HEKPFAGINGSGKHNNWSMGTDDGLNLLDPGDMPHDNKQFLLFC 378
Query: 676 APVPNSYDRIQP 687
V + D+
Sbjct: 379 TAVIKAVDKYAD 390
>gnl|CDD|216250 pfam01026, TatD_DNase, TatD related DNase. This family of proteins
are related to a large superfamily of metalloenzymes.
TatD, a member of this family has been shown
experimentally to be a DNase enzyme.
Length = 255
Score = 38.0 bits (89), Expect = 0.013
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 22/122 (18%)
Query: 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPF 274
+F LE+A+ LDLP+ IHT ++D L IL++ R V LH +
Sbjct: 112 VFRRQLELAKELDLPVVIHTRDAEED----------LLEILKEAGAPGLRVV-LH-CFTG 159
Query: 275 SKEASYLAYVYPQVYLDFG--LAIPKLSVQGMISSIKELLELAPTKKVMFSTDA-YASPE 331
S E + LD G ++I + ++E++ P +++ TDA Y +P
Sbjct: 160 SLE-------TAKEILDLGFYISISGIVTFKNAKKLREVVAEIPLDRLLVETDAPYLAPV 212
Query: 332 TY 333
Y
Sbjct: 213 PY 214
>gnl|CDD|182623 PRK10657, PRK10657, isoaspartyl dipeptidase; Provisional.
Length = 388
Score = 34.8 bits (81), Expect = 0.16
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 14/103 (13%)
Query: 289 YLDFGLAIPKLSVQGMIS---SIKELLELA-PTKKVMFSTDAYASPETY-----FLGAKR 339
+D + P +G ++ ++K LE P +V S+D S + +G
Sbjct: 245 VIDLTTSDPDFLGEGEVAPAEALKRALEAGVPLSRVTLSSDGNGSLPKFDEDGNLVGLGV 304
Query: 340 AR-EVVFSVLRDTCIDEDLSVGEAIEVAKDIFALNAAQFYKIN 381
E + +R+ DE L + +A++ N A+F K+N
Sbjct: 305 GSVESLLEEVRELVKDEGLPLEDALKP----LTSNVARFLKLN 343
>gnl|CDD|177922 PLN02284, PLN02284, glutamine synthetase.
Length = 354
Score = 33.5 bits (77), Expect = 0.41
Identities = 41/165 (24%), Positives = 63/165 (38%), Gaps = 38/165 (23%)
Query: 489 MIMADMHLKPGEPWEYCPREALRKV---SRLLKEE--FNLVLNAGFEIEFYLLKSVLREG 543
++M D + GEP R K+ + EE + G E E+ LL+ ++
Sbjct: 89 LVMCDAYTPAGEPIPTNKRAKAAKIFSHPDVAAEEPWY------GIEQEYTLLQKDVK-- 140
Query: 544 KEEWV---PIDFTP------YCSTAAYDAVSPVFQEVLADLH-------SLNISVEQLHA 587
W P+ P YC A A F + D H +NIS ++
Sbjct: 141 ---WPLGWPVGGYPGPQGPYYCGVGADKA----FGRDIVDAHYKACLYAGINIS--GING 191
Query: 588 EAGKGQFEIALGHTVAAKAADNLIFTREVLRAVARKHGLLATFVP 632
E GQ+E +G V A D L R +L + G++ +F P
Sbjct: 192 EVMPGQWEFQVGPVVGISAGDQLWVARYILERITEIAGVVVSFDP 236
>gnl|CDD|185760 cd08977, SusD, starch binding outer membrane protein SusD.
SusD-like proteins from Bacteroidetes, members of the
human distal gut microbiota, are part of the starch
utilization system (Sus). Sus is one of the large
clusters of glycosyl hydrolases, called polysaccharide
utilization loci (PULs), which play an important role in
polysaccharide recognition and uptake, and it is needed
for growth on amylose, amylopectin, pullulan, and
maltooligosaccharides. SusD, together with SusC, a
predicted beta-barrel porin, forms the minimum
outer-membrane starch-binding complex. The adult human
distal gut microbiota is essential for digestion of a
large variety of dietary polysaccharides, for which
humans lack the necessary glycosyl hydrolases.
Length = 359
Score = 33.2 bits (76), Expect = 0.54
Identities = 29/153 (18%), Positives = 48/153 (31%), Gaps = 20/153 (13%)
Query: 548 VPIDFTPYCS--TAAYDAVSPVFQEVLADLHSLNISVEQLHAEAGKGQFEIALGHTVAA- 604
VP+ T D+ V+ ++LAD L+ ++ L EA Q A
Sbjct: 119 VPLSTAADQGTETPPRDSQEEVYTQILAD---LDEAIALL-PEASSAQDFYIYFGDGRAW 174
Query: 605 KAADNLIFTREVLRAVARKHGLLATFVPNLWQNGENVFMASDSSSKHGMSSVGEKFMAGV 664
K A + R L A + + A++ S K G++ + F
Sbjct: 175 KKAARALLARVYLYL--------ANYTAADYAEALT---AAEKSFKGGVTLLTNLFGENA 223
Query: 665 LHHLSSIL--AFTAPVPNSYDRIQPNTWSGAYQ 695
+ I + NS N +G
Sbjct: 224 ANSKEDIFEIYYADSGDNSNPLGSLNNNNGYAN 256
>gnl|CDD|217811 pfam03951, Gln-synt_N, Glutamine synthetase, beta-Grasp domain.
Length = 84
Score = 30.2 bits (69), Expect = 0.90
Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 22/87 (25%)
Query: 407 DVSLIRVIWVDASG-QHRCRVVPVKRFNDIVTKYGVGLTFACMGMTSAVDGPADGTNLSG 465
V + + + D G R+ P ++ + G+G DG+++ G
Sbjct: 1 GVKFVDLRFTDILGRLKHVRI-PATELDEDAFEEGIGF---------------DGSSIEG 44
Query: 466 TGEIR-----LMPDLSTRWRIPWQKQE 487
I L PD ST + P++
Sbjct: 45 FAPINESDMYLKPDPSTAYIDPFRPDP 71
>gnl|CDD|238617 cd01292, metallo-dependent_hydrolases, Superfamily of
metallo-dependent hydrolases (also called amidohydrolase
superfamily) is a large group of proteins that show
conservation in their 3-dimensional fold (TIM barrel)
and in details of their active site. The vast majority
of the members have a conserved metal binding site,
involving four histidines and one aspartic acid residue.
In the common reaction mechanism, the metal ion (or
ions) deprotonate a water molecule for a nucleophilic
attack on the substrate. The family includes urease
alpha, adenosine deaminase, phosphotriesterase
dihydroorotases, allantoinases, hydantoinases, AMP-,
adenine and cytosine deaminases, imidazolonepropionase,
aryldialkylphosphatase, chlorohydrolases,
formylmethanofuran dehydrogenases and others.
Length = 275
Score = 31.9 bits (72), Expect = 1.1
Identities = 47/253 (18%), Positives = 78/253 (30%), Gaps = 39/253 (15%)
Query: 135 ILDQASPDGSIWTLDVFIETFLKQLRSAANKIVGLKSIAAYRSGLEINPHVTKKDAEEGL 194
++D S T + + AA G++ + G+ P +DAE L
Sbjct: 52 VVDMGSTPPPTTTKAAI-----EAVAEAARASAGIRVVLGL--GIPGVPAAVDEDAEALL 104
Query: 195 AEDLRSGKPVRI---------TNKSLIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRL 245
E LR G + T L D LE A+ L LP+ IH G
Sbjct: 105 LELLRRGLELGAVGLKLAGPYTATGLSDESLRRVLEEARKLGLPVVIHAGELPDPTR--- 161
Query: 246 SNPLHLRAILEDKRFSKCRFVLLHASYPFSKEASYLAYVYPQVYLDFGLAIPKLSVQGMI 305
+ + + H S+ + L + +
Sbjct: 162 ---ALEDLVALLRLGGRVVIG--HVSHLDPELLELLKEAGVSLEVCPLSNYLLGRDGEGA 216
Query: 306 SSIKELLELAPTKKVMFSTD-AYASPETYFLGAKRAREVVFSVLRDTCIDEDLSVGEAIE 364
+++ LLEL +V TD T L R + + L +G ++E
Sbjct: 217 EALRRLLELGI--RVTLGTDGPPHPLGTDLLALLRL------------LLKVLRLGLSLE 262
Query: 365 VAKDIFALNAAQF 377
A + +N A+
Sbjct: 263 EALRLATINPARA 275
>gnl|CDD|223162 COG0084, TatD, Mg-dependent DNase [DNA replication, recombination,
and repair].
Length = 256
Score = 31.8 bits (73), Expect = 1.3
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 29/125 (23%)
Query: 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPF 274
+F + LE+A+ L+LP+ IHT +D IL+++ V LH +
Sbjct: 113 VFEAQLELAKELNLPVIIHTRDAHED----------TLEILKEEGAP-VGGV-LH-CFSG 159
Query: 275 SKEASYLAYVYPQVYLDFGLAIPKLSVQGMI-----SSIKELLELAPTKKVMFSTDA-YA 328
S E + LD G +S+ G++ ++E+ P +++ TDA Y
Sbjct: 160 SAE-------EARKLLDLGF---YISISGIVTFKNAEKLREVARELPLDRLLLETDAPYL 209
Query: 329 SPETY 333
+P Y
Sbjct: 210 APVPY 214
>gnl|CDD|237229 PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase; Reviewed.
Length = 282
Score = 31.0 bits (71), Expect = 2.1
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 6/34 (17%)
Query: 266 VLLHASYPFSKEASYLAYVYPQVYLD--FGLAIP 297
+ L YPF K ++L PQV L FG IP
Sbjct: 121 LALAWIYPFMKRYTHL----PQVVLGAAFGWGIP 150
>gnl|CDD|238635 cd01310, TatD_DNAse, TatD like proteins; E.coli TatD is a
cytoplasmic protein, shown to have magnesium dependent
DNase activity.
Length = 251
Score = 30.6 bits (70), Expect = 2.8
Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 29/125 (23%)
Query: 215 IFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPLHLRAILEDKRFSKCRFVLLHASYPF 274
+F + LE+A+ L+LP+ IH+ +D + IL K + + + H +
Sbjct: 109 VFRAQLELAKELNLPVVIHSRDAHED----------VLEIL--KEYGPPKRGVFH-CFSG 155
Query: 275 SKEASYLAYVYPQVYLDFGLAIPKLSVQGMIS-----SIKELLELAPTKKVMFSTDA-YA 328
S E + LD G I S+ G+++ ++E+++ P ++++ TD+ Y
Sbjct: 156 SAE-------EAKELLDLGFYI---SISGIVTFKNANELREVVKEIPLERLLLETDSPYL 205
Query: 329 SPETY 333
+P +
Sbjct: 206 APVPF 210
>gnl|CDD|218343 pfam04950, DUF663, Protein of unknown function (DUF663). This
family contains several uncharacterized eukaryotic
proteins.
Length = 293
Score = 30.4 bits (69), Expect = 3.6
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 10/64 (15%)
Query: 200 SGKPVRI-TNKSLIDYIFISSLEVAQFLDLPLQIHTGFGDKDLDLRLSNPL----HLRAI 254
+G P +I + + Y+F + +V F P+ + T G + + L + +A
Sbjct: 220 TGHPYKIFKKTAFVRYMFFNPEDVEWF--KPVPLFTKSGRRG---HIKEALGTHGYFKAT 274
Query: 255 LEDK 258
+ K
Sbjct: 275 FDGK 278
>gnl|CDD|212538 cd11592, Agmatinase_PAH, Agmatinase-like family includes
proclavaminic acid amidinohydrolase. This agmatinase
subfamily contains bacterial and fungal/metazoan
enzymes, including proclavaminic acid amidinohydrolase
(PAH, EC 3.5.3.22) and Pseudomonas aeruginosa
guanidinobutyrase (GbuA) and guanidinopropionase (GpuA).
PAH hydrolyzes amidinoproclavaminate to yield
proclavaminate and urea in clavulanic acid biosynthesis.
Clavulanic acid is an effective inhibitor of
beta-lactamases and is used in combination with
amoxicillin to prevent the beta-lactam rings of the
antibiotic from hydrolysis and, thus keeping the
antibiotic biologically active. GbuA hydrolyzes
4-guanidinobutyrate (4-GB) into 4-aminobutyrate and urea
while GpuA hydrolyzes 3-guanidinopropionate (3-GP) into
beta-alanine and urea. Mutation studies show that
significant variations in two active site loops in these
two enzymes may be important for substrate specificity.
This subfamily belongs to the ureohydrolase superfamily,
which includes arginase, agmatinase, proclavaminate
amidinohydrolase, and formiminoglutamase.
Length = 289
Score = 29.4 bits (67), Expect = 7.4
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 16/61 (26%)
Query: 574 DLHSLNISVEQLHAEAGK----GQFEIALG--HTVAAKAADNLIFTREVLRAVARKHGLL 627
+ ++EQ+ G + LG H++ T +LRA+A+KHG +
Sbjct: 76 TPGDIEDALEQIEEAYRAILAAGPRPLTLGGDHSI----------TLPILRALAKKHGPV 125
Query: 628 A 628
A
Sbjct: 126 A 126
>gnl|CDD|238640 cd01315, L-HYD_ALN, L-Hydantoinases (L-HYDs) and Allantoinase
(ALN); L-Hydantoinases are a member of the
dihydropyrimidinase family, which catalyzes the
reversible hydrolytic ring opening of dihydropyrimidines
and hydantoins (five-membered cyclic diamides used in
biotechnology). But L-HYDs differ by having an L-enantio
specificity and by lacking activity on possible natural
substrates such as dihydropyrimidines. Allantoinase
catalyzes the hydrolytic cleavage of the five-member
ring of allantoin (5-ureidohydantoin) to form allantoic
acid.
Length = 447
Score = 29.6 bits (67), Expect = 7.6
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 156 LKQLRSAANK-IVGLKSIAAYRSGLEINPHVTKKDAEEGLAEDLRSGKPV 204
L QLR +VG K SG++ P V + EE + E ++G +
Sbjct: 130 LDQLRPLDEAGVVGFKCFLC-PSGVDEFPAVDDEQLEEAMKELAKTGSVL 178
>gnl|CDD|184232 PRK13675, PRK13675, GTP cyclohydrolase; Provisional.
Length = 308
Score = 29.1 bits (66), Expect = 8.3
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 202 KPVRITNKSLIDYIFISSLEVAQFLDLP 229
K V+I K + I + EV F+DLP
Sbjct: 28 KLVKIKRKGKRPIVLIPTFEV--FVDLP 53
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.400
Gapped
Lambda K H
0.267 0.0678 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 43,141,443
Number of extensions: 4396029
Number of successful extensions: 3909
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3872
Number of HSP's successfully gapped: 37
Length of query: 825
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 720
Effective length of database: 6,280,432
Effective search space: 4521911040
Effective search space used: 4521911040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.2 bits)