Query 003373
Match_columns 825
No_of_seqs 153 out of 198
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 22:17:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003373.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003373hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3691 Exocyst complex subuni 100.0 1.6E-87 3.4E-92 764.1 46.8 685 8-822 18-742 (982)
2 PF04048 Sec8_exocyst: Sec8 ex 100.0 3.2E-32 7E-37 264.6 16.4 137 15-151 1-142 (142)
3 PF10475 DUF2450: Protein of u 99.5 3.1E-12 6.8E-17 139.2 22.0 188 20-209 1-193 (291)
4 KOG2115 Vacuolar sorting prote 99.1 8.1E-09 1.7E-13 121.7 25.2 266 6-361 181-465 (951)
5 PF06248 Zw10: Centromere/kine 97.9 0.00049 1.1E-08 82.6 19.5 171 42-212 7-182 (593)
6 PF15469 Sec5: Exocyst complex 97.8 0.00067 1.5E-08 69.0 16.0 139 63-202 2-146 (182)
7 PF04100 Vps53_N: Vps53-like, 97.7 0.0028 6.1E-08 72.0 20.0 179 30-209 2-185 (383)
8 PF04124 Dor1: Dor1-like famil 97.6 0.0041 8.9E-08 69.5 19.7 158 48-207 13-170 (338)
9 KOG2176 Exocyst complex, subun 97.1 0.032 6.9E-07 66.8 19.3 173 36-209 35-207 (800)
10 PF10392 COG5: Golgi transport 96.6 0.075 1.6E-06 51.4 14.8 110 26-135 2-126 (132)
11 PF06148 COG2: COG (conserved 96.5 0.0026 5.7E-08 61.5 3.9 126 26-151 7-132 (133)
12 KOG2180 Late Golgi protein sor 96.1 0.38 8.1E-06 57.3 19.1 190 18-207 5-199 (793)
13 KOG2069 Golgi transport comple 96.0 0.35 7.6E-06 56.4 18.1 171 37-209 24-196 (581)
14 KOG2346 Uncharacterized conser 95.1 0.17 3.8E-06 57.6 11.4 195 6-214 15-212 (636)
15 PF08700 Vps51: Vps51/Vps67; 91.8 2.2 4.7E-05 37.7 10.6 77 29-105 3-82 (87)
16 KOG2307 Low density lipoprotei 90.7 5.6 0.00012 46.6 14.8 134 3-142 10-150 (705)
17 PF10191 COG7: Golgi complex c 89.3 48 0.001 41.5 22.8 184 26-211 4-198 (766)
18 KOG0412 Golgi transport comple 85.7 35 0.00075 41.5 17.4 160 46-208 35-204 (773)
19 KOG1961 Vacuolar sorting prote 85.4 91 0.002 37.4 20.3 187 11-209 17-216 (683)
20 PF09763 Sec3_C: Exocyst compl 81.4 38 0.00082 41.9 16.5 149 60-208 9-179 (701)
21 PF04437 RINT1_TIP1: RINT-1 / 80.7 6.1 0.00013 46.6 9.0 129 593-727 97-229 (494)
22 PF02601 Exonuc_VII_L: Exonucl 75.1 86 0.0019 34.7 15.6 77 48-124 146-228 (319)
23 PF07899 Frigida: Frigida-like 69.1 13 0.00029 40.8 7.2 80 113-198 146-225 (290)
24 PRK11637 AmiB activator; Provi 66.0 1.7E+02 0.0036 33.9 15.8 145 47-197 45-190 (428)
25 KOG2033 Low density lipoprotei 61.8 81 0.0018 38.4 11.9 104 62-168 37-140 (863)
26 PF04129 Vps52: Vps52 / Sac2 f 59.5 2.5E+02 0.0054 33.5 15.9 121 89-209 22-154 (508)
27 PF12854 PPR_1: PPR repeat 59.3 15 0.00033 26.6 3.7 25 315-340 7-31 (34)
28 KOG2211 Predicted Golgi transp 59.3 3.9E+02 0.0084 32.8 16.8 138 46-190 72-218 (797)
29 cd07615 BAR_Endophilin_A3 The 59.3 2.4E+02 0.0053 29.9 20.1 120 45-166 84-211 (223)
30 KOG2273 Membrane coat complex 59.2 2.8E+02 0.0061 32.8 16.4 160 48-213 280-445 (503)
31 cd07613 BAR_Endophilin_A1 The 57.5 2.6E+02 0.0057 29.7 17.2 124 45-170 84-215 (223)
32 PTZ00464 SNF-7-like protein; P 55.4 2.7E+02 0.0058 29.3 13.5 71 131-208 77-147 (211)
33 PF08317 Spc7: Spc7 kinetochor 55.1 1.2E+02 0.0025 34.0 11.6 126 47-191 161-287 (325)
34 PF10136 SpecificRecomb: Site- 54.0 1.2E+02 0.0026 37.2 12.0 101 7-107 93-236 (643)
35 PF09325 Vps5: Vps5 C terminal 52.8 2.9E+02 0.0062 28.7 13.7 96 46-141 79-175 (236)
36 TIGR03185 DNA_S_dndD DNA sulfu 51.1 2E+02 0.0044 35.3 13.7 31 182-212 492-522 (650)
37 cd07665 BAR_SNX1 The Bin/Amphi 50.2 3.5E+02 0.0076 29.0 14.5 122 46-173 77-198 (234)
38 PF10186 Atg14: UV radiation r 49.0 3.4E+02 0.0074 29.1 13.9 83 48-133 26-108 (302)
39 KOG2148 Exocyst protein Sec3 [ 47.2 1.9E+02 0.0041 35.2 11.7 150 59-209 196-363 (867)
40 cd07614 BAR_Endophilin_A2 The 46.8 3.8E+02 0.0083 28.4 20.6 152 16-169 46-214 (223)
41 cd07592 BAR_Endophilin_A The B 46.7 2.1E+02 0.0046 30.4 11.2 66 46-111 85-151 (223)
42 cd07617 BAR_Endophilin_B2 The 45.9 3.9E+02 0.0085 28.3 17.0 107 46-152 90-203 (220)
43 cd07616 BAR_Endophilin_B1 The 45.4 4.1E+02 0.0088 28.4 13.1 142 62-208 71-229 (229)
44 PLN03094 Substrate binding sub 45.1 3.2E+02 0.0068 31.3 13.0 33 138-170 336-368 (370)
45 KOG2196 Nuclear porin [Nuclear 43.9 2.3E+02 0.005 30.3 10.7 80 60-153 71-151 (254)
46 PF05266 DUF724: Protein of un 43.8 2.2E+02 0.0048 29.5 10.6 24 1-24 18-41 (190)
47 COG5491 VPS24 Conserved protei 42.6 3.8E+02 0.0083 28.1 12.1 79 74-152 24-105 (204)
48 PRK10869 recombination and rep 41.3 7.2E+02 0.016 30.0 17.9 24 183-206 358-381 (553)
49 PRK14140 heat shock protein Gr 40.8 1.1E+02 0.0024 31.6 7.9 15 128-142 90-104 (191)
50 COG1463 Ttg2C ABC-type transpo 38.9 6.2E+02 0.013 28.6 15.7 60 64-123 166-225 (359)
51 PF06160 EzrA: Septation ring 38.6 7.9E+02 0.017 29.7 17.2 107 74-183 365-471 (560)
52 COG4026 Uncharacterized protei 38.6 5.1E+02 0.011 27.5 12.7 56 80-135 127-189 (290)
53 PF04156 IncA: IncA protein; 38.3 4.4E+02 0.0094 26.7 12.8 22 109-130 158-179 (191)
54 PF04048 Sec8_exocyst: Sec8 ex 38.1 2.7E+02 0.0058 27.2 9.8 73 46-118 23-102 (142)
55 TIGR00996 Mtu_fam_mce virulenc 37.3 5.7E+02 0.012 27.7 14.5 55 68-122 182-236 (291)
56 PRK00286 xseA exodeoxyribonucl 37.3 4.1E+02 0.0089 30.8 12.9 60 48-107 263-324 (438)
57 COG4717 Uncharacterized conser 37.2 7.7E+02 0.017 31.3 15.0 92 45-145 177-269 (984)
58 cd07600 BAR_Gvp36 The Bin/Amph 36.8 5.6E+02 0.012 27.5 13.2 142 61-208 79-242 (242)
59 PF09325 Vps5: Vps5 C terminal 36.5 5.1E+02 0.011 26.9 15.5 43 53-96 35-77 (236)
60 KOG2347 Sec5 subunit of exocys 36.2 1.6E+02 0.0034 36.9 9.2 170 27-202 166-350 (934)
61 KOG3501 Molecular chaperone Pr 35.4 3.6E+02 0.0078 25.2 9.2 78 82-159 4-94 (114)
62 PRK04778 septation ring format 35.2 8.8E+02 0.019 29.3 15.6 107 74-183 369-475 (569)
63 PF04108 APG17: Autophagy prot 33.5 8.1E+02 0.018 28.4 15.0 52 70-121 286-337 (412)
64 PF13870 DUF4201: Domain of un 33.5 5.1E+02 0.011 26.0 12.8 98 62-159 51-155 (177)
65 PF06160 EzrA: Septation ring 33.1 9.5E+02 0.021 29.0 17.3 86 77-172 118-204 (560)
66 KOG2216 Conserved coiled/coile 32.4 4.5E+02 0.0097 28.9 10.9 137 53-197 15-171 (303)
67 PF07851 TMPIT: TMPIT-like pro 31.9 2.8E+02 0.0061 31.2 9.7 94 22-147 1-94 (330)
68 KOG3745 Exocyst subunit - Sec1 31.7 8.6E+02 0.019 30.4 14.3 163 30-207 47-219 (763)
69 PRK04778 septation ring format 31.6 9E+02 0.02 29.2 14.9 79 83-171 128-207 (569)
70 KOG2460 Signal recognition par 31.5 9.8E+02 0.021 28.7 15.2 120 48-173 300-454 (593)
71 PHA02562 46 endonuclease subun 30.6 4.8E+02 0.01 31.0 12.4 9 184-192 306-314 (562)
72 cd07623 BAR_SNX1_2 The Bin/Amp 30.3 6.6E+02 0.014 26.4 15.7 150 51-206 21-185 (224)
73 PHA02503 putative transcriptio 30.1 50 0.0011 26.4 2.5 19 622-640 26-44 (57)
74 cd07624 BAR_SNX7_30 The Bin/Am 29.0 6.6E+02 0.014 25.9 16.1 72 46-117 67-138 (200)
75 cd07592 BAR_Endophilin_A The B 28.8 7.3E+02 0.016 26.3 19.5 60 148-207 157-219 (223)
76 PF15290 Syntaphilin: Golgi-lo 28.4 4.4E+02 0.0095 28.9 10.0 45 86-130 115-159 (305)
77 KOG0612 Rho-associated, coiled 27.5 9.9E+02 0.021 31.6 14.2 69 84-154 528-596 (1317)
78 PF12128 DUF3584: Protein of u 27.3 1.1E+03 0.023 31.5 15.5 79 40-118 761-853 (1201)
79 cd07595 BAR_RhoGAP_Rich-like T 27.2 8E+02 0.017 26.3 17.6 66 47-112 79-145 (244)
80 KOG0796 Spliceosome subunit [R 26.0 5.3E+02 0.011 28.9 10.3 73 84-168 86-158 (319)
81 TIGR00237 xseA exodeoxyribonuc 26.0 1E+03 0.022 27.8 13.5 60 48-107 258-319 (432)
82 TIGR00606 rad50 rad50. This fa 25.4 1.8E+03 0.038 29.7 17.5 168 4-199 379-547 (1311)
83 smart00188 IL10 Interleukin-10 25.2 5.6E+02 0.012 25.2 9.3 33 82-114 65-97 (137)
84 PF05664 DUF810: Protein of un 25.2 4E+02 0.0087 33.0 10.3 82 622-716 513-599 (677)
85 PF11887 DUF3407: Protein of u 25.0 9.1E+02 0.02 26.2 13.1 101 58-173 37-137 (267)
86 cd07610 FCH_F-BAR The Extended 24.5 7.1E+02 0.015 24.8 14.8 33 152-184 123-155 (191)
87 PF04108 APG17: Autophagy prot 24.1 1.2E+03 0.025 27.1 16.5 107 88-210 255-361 (412)
88 COG4477 EzrA Negative regulato 24.1 1.3E+03 0.028 27.7 16.3 82 75-173 126-208 (570)
89 KOG4643 Uncharacterized coiled 23.8 1.7E+03 0.037 29.0 15.0 131 74-204 467-609 (1195)
90 PRK09039 hypothetical protein; 23.6 1.1E+03 0.024 26.6 14.6 13 46-58 78-90 (343)
91 COG3352 FlaC Putative archaeal 23.3 7.6E+02 0.016 24.7 10.3 48 66-113 92-140 (157)
92 cd00632 Prefoldin_beta Prefold 23.0 3E+02 0.0065 25.3 6.9 81 118-199 22-103 (105)
93 KOG2911 Uncharacterized conser 22.8 7.4E+02 0.016 28.9 11.0 100 47-154 245-362 (439)
94 KOG0994 Extracellular matrix g 22.6 1.9E+03 0.041 29.1 21.0 64 66-129 1569-1632(1758)
95 PF07083 DUF1351: Protein of u 22.4 7.9E+02 0.017 25.8 10.7 136 57-208 16-157 (215)
96 TIGR00634 recN DNA repair prot 22.0 1.4E+03 0.031 27.4 18.4 39 89-127 274-312 (563)
97 KOG2163 Centromere/kinetochore 21.8 8.1E+02 0.018 29.9 11.3 78 135-212 107-187 (719)
98 PHA00212 putative transcriptio 21.7 86 0.0019 25.5 2.5 19 622-640 29-47 (63)
99 PRK10884 SH3 domain-containing 21.6 9.4E+02 0.02 25.2 11.4 25 47-71 91-115 (206)
100 PF08385 DHC_N1: Dynein heavy 21.4 1.4E+03 0.03 27.1 17.6 149 16-181 124-292 (579)
101 cd07596 BAR_SNX The Bin/Amphip 21.2 8.5E+02 0.018 24.5 16.0 79 47-125 62-140 (218)
102 PRK11281 hypothetical protein; 21.1 1.5E+03 0.033 29.8 14.8 123 86-212 126-254 (1113)
103 cd07665 BAR_SNX1 The Bin/Amphi 21.0 7.9E+02 0.017 26.3 10.4 73 48-126 28-100 (234)
104 PF04740 LXG: LXG domain of WX 21.0 7E+02 0.015 25.3 10.0 39 98-136 141-180 (204)
105 TIGR03042 PS_II_psbQ_bact phot 21.0 3.1E+02 0.0068 27.1 6.7 76 135-212 42-119 (142)
106 PRK15374 pathogenicity island 20.8 1.5E+03 0.033 27.3 15.1 48 57-105 125-172 (593)
107 PRK10929 putative mechanosensi 20.7 2E+03 0.044 28.7 18.1 119 84-212 105-235 (1109)
108 TIGR03545 conserved hypothetic 20.6 4E+02 0.0087 32.2 9.0 12 136-147 251-262 (555)
109 KOG0963 Transcription factor/C 20.5 1.6E+03 0.035 27.4 14.5 122 69-204 230-353 (629)
110 PF08393 DHC_N2: Dynein heavy 20.4 3.4E+02 0.0075 30.8 8.2 97 14-113 142-239 (408)
No 1
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-87 Score=764.12 Aligned_cols=685 Identities=20% Similarity=0.224 Sum_probs=517.4
Q ss_pred CCCCchHHHHHHHHHhHhhcCCCCCCchHHHHHhhcc--CchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHH
Q 003373 8 PISPEKAYLREELARIEVSWVAPRFDSLPHVVHILTS--KDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQ 85 (825)
Q Consensus 8 p~~~~~~~l~~~l~~I~~ew~~~~f~~~~~~l~~L~s--~~~e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~~ 85 (825)
|+.-++....+...+|...|. .+.+. .+||.++++||+.+++.+.+||++|++|+|+|+++|.+|++
T Consensus 18 ~~n~~~d~sn~~G~lInvi~n-----------L~~Se~~e~re~ek~~Led~Yk~~~a~Lq~lv~~H~q~~t~~i~sy~~ 86 (982)
T KOG3691|consen 18 YVNYGTDMSNELGLLINVIRN-----------LVGSEDTEPRETEKERLEDSYKEFGAALQELVHTHKQDFTTGISSYGE 86 (982)
T ss_pred cccccCCcccccchhhhHHHh-----------hccCCcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666777777777 44432 38999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhhcHHHHHHHHhccCHHHHHHHHH
Q 003373 86 ILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHA 165 (825)
Q Consensus 86 i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~ 165 (825)
|++.|+.||++|.+||++|.+||++|+|+|++|++||.++.+||+||++|++||+++++|++||.+|++|+|++|.++|.
T Consensus 87 i~s~It~~rerI~~vK~~L~~~k~ll~~~rdeLqklw~~~~q~K~Vi~vL~eieEl~qvPqkie~~i~keqY~~Asdll~ 166 (982)
T KOG3691|consen 87 ISSGITNCRERIHNVKNNLEACKELLNTRRDELQKLWAENSQYKKVIEVLKEIEELRQVPQKIETLIAKEQYLQASDLLT 166 (982)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCCCCcCCcHHHHHHHHHhHHHHHHHHHHHHHHhHhccCCcchhhhcccccCCCCccccccccccCCCCCcc
Q 003373 166 QSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLYNRGEYSSAVLSMHEMDDEVPTTVAVAYTTNNSQPLS 245 (825)
Q Consensus 166 ~s~~~l~~~~L~~I~aL~~lr~~L~~~~~~L~d~LieEL~~~lYlKs~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s 245 (825)
+++.++|++ |.+|.+|+|||++|+.+++.|+++|+||||+|+|+|+..... .++.+. +.++..
T Consensus 167 ~~~~~lng~-L~~VEgLs~l~~ele~~~~~L~~~L~eELv~ily~ks~~~~l-~~~~~~-~~~~s~-------------- 229 (982)
T KOG3691|consen 167 RAWELLNGP-LDGVEGLSDLRSELEGLLSHLEDILIEELVSILYLKSVAYPL-VSYCRT-NPLSSR-------------- 229 (982)
T ss_pred HHHHHhcCc-chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhH-HhhhcC-CchhhH--------------
Confidence 999999996 999999999999999999999999999999999999753111 111111 111000
Q ss_pred ccccccCCCCCCcccCCCCCCCCCCCCCCCCCCcccccccccccccccc-----ccCC----Cch--HHHHHhhcC-CCc
Q 003373 246 RRTRLKGDNQFGVHGLADGSHSSTFDGHDEDGSLEAHDETSLDGLSIGW-----LANS----TPD--EFVEAIRKS-DAP 313 (825)
Q Consensus 246 ~~t~~~~~n~~~~~~l~~~~~~~s~~~~~~~~~~~~~d~~~~~~~~~~~-----l~~~----~~~--~~~e~~~~~-~~~ 313 (825)
+. +..++.++.++...++.+.+. ..+. +.+ ...+++.-. |+.
T Consensus 230 ----l~----------------------~~~~~~in~t~l~~sr~~~ea~~~k~~~g~~sv~~~~~~~~~~~l~~~~pe~ 283 (982)
T KOG3691|consen 230 ----LN----------------------DFLYNNINTTTLGTSRQLLEALCHKSDAGSGSVRDIRIVLEKEDLLLSLPEA 283 (982)
T ss_pred ----HH----------------------HHhhcccCccccCccHHHHHHHHHHhhcCCcchhhHHHHHhhccccccchhh
Confidence 00 001111111111111100000 0000 000 000111111 444
Q ss_pred hhHHHHHHHHHHHHhhCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhccccccccccccCccccccccccccccccc
Q 003373 314 LHVKYLQTMVECLCILGKVAAAGAIICQRLRPTIHEIITSKIKAHAQLINSSRSAIGQAAQTGTTGLHFMKGQLRSYQLP 393 (825)
Q Consensus 314 ~s~~yi~~lve~L~~LgkL~~Al~~i~qRl~~EL~~iV~~ti~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 393 (825)
.+..|+.++++.++++.|+|.++++|..|+.+|+++||.+++..++.. |.
T Consensus 284 ~sslf~~il~k~~~~~~k~p~~~n~i~~~~~~el~niv~kSt~~i~~~-----------------------g~------- 333 (982)
T KOG3691|consen 284 NSSLFRRILEKFTTVDSKSPAIVNKISERINVELVNIVSKSTYDISLS-----------------------GE------- 333 (982)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhhccchhhhcc-----------------------cc-------
Confidence 566788899999999999999999999999999999998755433320 10
Q ss_pred ccccccCccccccccccCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccccccCCC
Q 003373 394 KQKRQNGISLSGTLLAVSPVSALMAPMGKAQAAAKELLDSILDSVVRIFENHVVVGELLESRSSRHDINTPKSMIADANW 473 (825)
Q Consensus 394 ~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~L~dLl~~lf~k~~~V~~~H~vv~~~~~~~~~r~d~~~~~~~~~~~~~ 473 (825)
+..++. .+.....+|.++||.||.||.++++.|.++++..... |.-.|+
T Consensus 334 -~~~e~a------------------t~~tn~f~L~ell~~if~kf~a~aq~Ha~~~~~s~~~----~vv~P~-------- 382 (982)
T KOG3691|consen 334 -TDREHA------------------TFDTNHFMLLELLEEIFTKFEAAAQKHASSLHKSLQN----DVVSPK-------- 382 (982)
T ss_pred -chhhhh------------------hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----cccCCc--------
Confidence 000110 0111223799999999999999999999998843311 111111
Q ss_pred CCCCcccccCCCchhhhHHHHHHHHHHHHHHHhhcCccchhh-hHHH----------HHHHHhcCCCCCCcCCCCCCCcc
Q 003373 474 NPDSEASVTGGYSIGFSMTVLQSECQQLICEILRATPEAASA-DAAV----------QTARLASKAPSKEKRDGSEDGLT 542 (825)
Q Consensus 474 ~~d~~~s~~~~y~~~~vW~~iQ~Elq~LL~dYL~~~~~~~s~-~~~~----------~~~~~as~~p~k~k~~~~~~~~~ 542 (825)
.+ -...|++.++|..+|+||+.||.+||+..+..... +.+. ..+.++...+.. ++ ...
T Consensus 383 --~s---q~d~f~~~~~W~k~qs~ielllsE~i~~nn~~~~~~e~s~~~sp~s~~r~~~~~f~~e~~~~-----~~-s~~ 451 (982)
T KOG3691|consen 383 --VS---QKDTFDFTDFWQKAQSEIELLLSEYIDNNNNSVKGTEMSINNSPASNERKKLFDFTNEIAVE-----PN-SNL 451 (982)
T ss_pred --cc---CCCcccHHHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCCcchhHHHHhhccccCC-----CC-ccc
Confidence 10 01169999999999999999999999887754322 1111 012222222111 11 247
Q ss_pred eeeeccCcccccCcccchhhccccccCCCcccccCccccccccCCCccchhhhhHHHHHHHHHHHHhCCCCCcCcccchH
Q 003373 543 FAFRFTDATISIPNQGADLIRQGWSRRGTNVLQEGYGTAAVLPEQGIYLAASIYRPVLQFTDKVASMLPQKYSQLGNDGL 622 (825)
Q Consensus 543 f~F~fs~~~~s~~~~~~~~~~~g~~~s~~~~~~e~~~~~~vl~~p~~fn~~~Iy~p~l~Fi~~i~~~l~~~~~~~~~~~l 622 (825)
|.|+|+.++..++.+....+...+...+--...+.+.-...+|+||+|||++||+|++.|+++++.+++++. ..+|.+
T Consensus 452 f~~~~~~~a~~k~~~l~~qrs~~~~~~~el~~g~s~e~~e~ic~Psvfni~vI~~pll~fie~te~~l~~~p--~q~c~l 529 (982)
T KOG3691|consen 452 FYHRINELANEKAPELILQRSNASVSTIELFSGSSKEIVELICKPSVFNIKVILPPLLRFIEETESILKNPP--IQPCSL 529 (982)
T ss_pred chhHHHHHhhhccchhhhhhhhhhhccchhccCcchhhhcccCCcccceeeehhhHHHHHHHHHHHHcCCCC--CCCchH
Confidence 778888777766655333222222111100111112224569999999999999999999999999998874 569999
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCccccccCCCcccccccccCCcccchHHHHHHHHHHHHHHHHhhHHhHH
Q 003373 623 LAFVENFVKDHLLPTMFVDYRKGVQQAISSPAAFRPRAHTAATYVPSIEKGRPVLQGLLAIDFLAKEVLGWAQAMPKFAA 702 (825)
Q Consensus 623 ~~Fl~~Fv~~~FLp~l~~~~~~~~~~a~~~~dAfk~~~~~~~~~~~~l~~~rPil~~~~~v~~~~~el~~~l~t~p~y~~ 702 (825)
++|+++||+++||||++..+...|+.++++.||||...+|+. .+.++..+|++|+++.+..-+-++...+++++.|.+
T Consensus 530 ~~Fm~~yi~~sFl~qv~~~m~~~ie~~~k~~~a~~l~~s~~~--i~i~k~~~~l~q~~~~ve~~L~~v~n~~~~l~~~~~ 607 (982)
T KOG3691|consen 530 RNFMDEYIKGSFLPQVYKEMSSHIEGIMKDVDAFRLHRSWKI--IPIFKCHLPLLQSFHIVEDYLPIVANLAVDLYELSD 607 (982)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHhhcccCcceeeecCHhh--hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999975 567788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc------cccchhhcccccHhHHHhcCccccCCCC-CCC-C--CC-CCC---Ccc
Q 003373 703 DLVKYVQTFLERTYERCRTSYMEAVL------EKQSYMLIGRHDIDKLLRLEPASASLPN-GQL-D--SV-SSV---NDA 768 (825)
Q Consensus 703 ~~~~lv~~~L~~y~e~c~~~y~~lv~------~~~Sa~w~~~~dis~lm~~~P~~~~l~~-~~~-~--~~-~~~---~~~ 768 (825)
.|+.++|..+..|++.|+++|+++++ .++|++|.+|+||++++++.|+|....- ++. . ++ ++. .++
T Consensus 608 ~~l~m~~~~~~~Y~~~c~~a~~g~~~~~~~~~~~is~aWl~Dddisr~l~klpNw~~~s~~~~~~~~r~E~e~~lq~~~r 687 (982)
T KOG3691|consen 608 YLLNMVCNHLSDYLDICRAALRGIVQHVSEVKRKISVAWLKDDDISRQLKKLPNWKNPSLEGQNELCREEEESFLQAGDR 687 (982)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhhhhHHHhccchhHHHHHhccCCcccccccccchhhhhcchHhHhhhc
Confidence 99999999999999999999999997 4599999999999999999999987543 221 1 11 111 123
Q ss_pred ccccchhhhhhhhcc-CCCCCccccccchHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 003373 769 ETPGVESELRELFLS-LRPIRQENLIHDENKLILLASLSDSLEYVADSIERQVLS 822 (825)
Q Consensus 769 ~~~E~E~~l~~l~~~-~~~I~~~dLI~D~~~l~~La~L~~SleWfa~~i~~l~~~ 822 (825)
+-+|+|++++||+.. +..++..+|+.|+..|+++|+||+|++|||++++.....
T Consensus 688 ~~kE~e~li~nLgt~~q~~~s~~~il~~m~~lK~~a~m~ES~~w~a~r~rs~~~~ 742 (982)
T KOG3691|consen 688 NIKESELLISNLGTDSQLSISVSDILNDMSDLKQLANMHESLEWFADRARSGFDF 742 (982)
T ss_pred ccchHhhhhcccchhhhcccCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhccc
Confidence 448999999999743 557999999999999999999999999999999877654
No 2
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=99.98 E-value=3.2e-32 Score=264.65 Aligned_cols=137 Identities=39% Similarity=0.596 Sum_probs=132.6
Q ss_pred HHHHHHHHhHhhcCC---CCCCchHHHHHhhcc--CchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHH
Q 003373 15 YLREELARIEVSWVA---PRFDSLPHVVHILTS--KDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRL 89 (825)
Q Consensus 15 ~l~~~l~~I~~ew~~---~~f~~~~~~l~~L~s--~~~e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~~i~~~ 89 (825)
.|+++|+.|+++|++ ++|+|+.+|+.+|+. .++++++++|++.++.++.+|+++|++||++||++|++|+.|+..
T Consensus 1 ~l~~~l~~I~~~W~~~~~~~~~pv~~al~~ld~ss~g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~ 80 (142)
T PF04048_consen 1 ELDEVLNEIKDEWPFMLTDDFNPVELALSLLDDSSVGRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSS 80 (142)
T ss_pred CHHHHHHHHHHHHHHHhcCCCcHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 379999999999997 899999999999954 479999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhhcHHHHHHH
Q 003373 90 FSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKL 151 (825)
Q Consensus 90 i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~iL~~Ie~l~~vP~kie~l 151 (825)
|++||++|..+|++|++||..|+|++++|++||.++++|++||++|++||+|+++|++||+|
T Consensus 81 i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~s~~~~~mi~iL~~Ie~l~~vP~kie~l 142 (142)
T PF04048_consen 81 ISESQERIRELKESLQEAKSLLGCRREELKELWQRSQEYKEMIEILDQIEELRQVPDKIESL 142 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999975
No 3
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=99.48 E-value=3.1e-12 Score=139.22 Aligned_cols=188 Identities=19% Similarity=0.279 Sum_probs=174.9
Q ss_pred HHHhHhhcCCCCCCchHHHHHhhccC-----chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHH
Q 003373 20 LARIEVSWVAPRFDSLPHVVHILTSK-----DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESA 94 (825)
Q Consensus 20 l~~I~~ew~~~~f~~~~~~l~~L~s~-----~~e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq 94 (825)
|+.|++.|..++|||..+.+.-+... ..+...++|..+.+.++..|-..|.+||.+|..++++...|...+.++.
T Consensus 1 l~si~~~yF~~~FD~~~~~L~~l~~~~~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~ 80 (291)
T PF10475_consen 1 LESIPAIYFDEDFDPVRYELEKLPEDELDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEAL 80 (291)
T ss_pred CCCCcHhhcCCCCCchHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788899999999999999887554 3355678899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhhcHHHHHHHHhccCHHHHHHHHHHHHHHhccc
Q 003373 95 ESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLERE 174 (825)
Q Consensus 95 ~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~ 174 (825)
..++.+|+.|..++..+....-++.++..+...+..+++.|..|..+.+.-..|+.++++++|..|.+++.+...+++
T Consensus 81 ~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~-- 158 (291)
T PF10475_consen 81 VICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLE-- 158 (291)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred CCCCcCCcHHHHHHHHHhHHHHHHHHHHHHHHhHh
Q 003373 175 GLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLY 209 (825)
Q Consensus 175 ~L~~I~aL~~lr~~L~~~~~~L~d~LieEL~~~lY 209 (825)
++.++.++++|+.+|+.....+-++|-.+|.....
T Consensus 159 ~l~~~~c~~~L~~~L~e~~~~i~~~ld~~l~~~~~ 193 (291)
T PF10475_consen 159 ELKGYSCVRHLSSQLQETLELIEEQLDSDLSKVCQ 193 (291)
T ss_pred hcccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999988888876544
No 4
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=8.1e-09 Score=121.71 Aligned_cols=266 Identities=15% Similarity=0.187 Sum_probs=217.7
Q ss_pred CCCCCCchHHHHHHHHHhHhhcCCCCCC--------chHHHHHh-hc----cCch------hHHHHHHHHHHHHHHHHHH
Q 003373 6 GLPISPEKAYLREELARIEVSWVAPRFD--------SLPHVVHI-LT----SKDR------EGEVQILKDQNDIIEEVVD 66 (825)
Q Consensus 6 ~~p~~~~~~~l~~~l~~I~~ew~~~~f~--------~~~~~l~~-L~----s~~~------e~~~~~l~~~~~~~~~~L~ 66 (825)
|.|.|.........|+.|+.-|-.++|+ .+--+|.+ ++ +.++ ..--++|..+.|.+|-.|-
T Consensus 181 ~~~~~~~~~~~~~~l~sVPsiffk~dF~Lddp~TF~~V~~~id~t~~~~a~~~~~~~~~~~~~LQekLs~yLDvVE~~La 260 (951)
T KOG2115|consen 181 EADGPSTRGGDATDLSSVPSIFFKSDFQLDDPATFHSVLPAIDLTLTKTAMNRQAERLEANSALQEKLSHYLDVVELHLA 260 (951)
T ss_pred CCCCccccccchhhHHhCcchhcCCcccCCCcchHhhhccccccchhcccccCChhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777888999999888876553 33232222 11 1121 2223578888999999999
Q ss_pred HHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhhcHH
Q 003373 67 EVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPA 146 (825)
Q Consensus 67 ~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~iL~~Ie~l~~vP~ 146 (825)
.-|..-.+.|..+|.+++.+...+-++-+.|+.+|++|++........+..+.++-.+..++.++.+.|..|+.|.+...
T Consensus 261 ~eIs~~SdsFfha~~~~~~Lq~~~~d~~~~vk~Lre~i~~vd~~~~~~s~~Ile~~~~r~n~~kL~~kL~~i~~V~~~q~ 340 (951)
T KOG2115|consen 261 QEISKRSDSFFHAMTSLHNLQKELRDTMSEVKELRENIKEVDAENVRKSIKILELALTRKNVEKLLQKLRLIATVHQAQS 340 (951)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHhcccCCCCcCCcHHHHHHHHHhHHHHHHHHHHHHHHhHhccCCcchhhhcccccCC
Q 003373 147 RIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLYNRGEYSSAVLSMHEMDD 226 (825)
Q Consensus 147 kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~aL~~lr~~L~~~~~~L~d~LieEL~~~lYlKs~~~~~~~~~~~~~~ 226 (825)
++..++++.+|..|.+++.....+|.+.+|.+|.+.++||.|+.+..+++-.|+++|+...+- + +-
T Consensus 341 ~vq~ll~~~d~~~ALdlI~t~q~~L~g~eL~gl~sfrhL~~ql~el~~tI~~m~t~eF~~~~~--~------------Dl 406 (951)
T KOG2115|consen 341 TVQLLLSTQDFVGALDLIKTIQELLKGSELLGLHSFRHLRSQLLELYKTIDKMLTREFSTYSK--S------------DL 406 (951)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhhcCchhHHhhHHHHHHHHHHHHHHHHHHHHHHHH--H------------Hh
Confidence 999999999999999999999999997899999999999999999999999999999865332 1 10
Q ss_pred CCccccccccccCCCCCccccccccCCCCCCcccCCCCCCCCCCCCCCCCCCccccccccccccccccccCCCchHHHHH
Q 003373 227 EVPTTVAVAYTTNNSQPLSRRTRLKGDNQFGVHGLADGSHSSTFDGHDEDGSLEAHDETSLDGLSIGWLANSTPDEFVEA 306 (825)
Q Consensus 227 ~l~~~~~~~~~~~~~~~~s~~t~~~~~n~~~~~~l~~~~~~~s~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~~~~e~ 306 (825)
+.+.+ . . |++ .+++
T Consensus 407 g~~~~-------------------------------~--------------------~----------ls~-----~lee 420 (951)
T KOG2115|consen 407 GRKLT-------------------------------L--------------------Q----------LSI-----LLEE 420 (951)
T ss_pred CCCch-------------------------------H--------------------H----------HHH-----HHHH
Confidence 00000 0 0 000 1111
Q ss_pred hhcCCCchhHHHHHHHHHHHHhhCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Q 003373 307 IRKSDAPLHVKYLQTMVECLCILGKVAAAGAIICQRLRPTIHEIITSKIKAHAQL 361 (825)
Q Consensus 307 ~~~~~~~~s~~yi~~lve~L~~LgkL~~Al~~i~qRl~~EL~~iV~~ti~~~~~~ 361 (825)
.|+.-++-.|.+..|+|.+++.-.+.+..++.+||..+|.+.-.+
T Consensus 421 ----------~~L~~~vlgllr~~klpsf~~~~~d~l~~~~k~iikq~i~d~l~~ 465 (951)
T KOG2115|consen 421 ----------DRLSSLVLGLLRTRKLPSFLEGYRDKLIETFKNIIKQKITDLLVR 465 (951)
T ss_pred ----------hHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888889999999999999999999999999998888766543
No 5
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=97.90 E-value=0.00049 Score=82.56 Aligned_cols=171 Identities=17% Similarity=0.286 Sum_probs=142.3
Q ss_pred hccCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH-H-HHHHHHhccCcHHHH
Q 003373 42 LTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVD-L-AEAKRRLGTRNKQLH 119 (825)
Q Consensus 42 L~s~~~e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk~~-L-~~~k~~L~~~~~~L~ 119 (825)
|+.++.+....+|......+...+...|++||.+|-..+.+-..++.....-...|..+.+. . ......|..-..++.
T Consensus 7 l~~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~ 86 (593)
T PF06248_consen 7 LSKEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQ 86 (593)
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 44556788888999999999999999999999999999999988887777777777444333 1 223444555566777
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhcHHHHHHHHhccCHHHHHHHHHHHHHHhcc---cCCCCcCCcHHHHHHHHHhHHHH
Q 003373 120 QLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLER---EGLQTVGALQDVRSELTKLRGVL 196 (825)
Q Consensus 120 ~L~~~s~~~~~~i~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~---~~L~~I~aL~~lr~~L~~~~~~L 196 (825)
.|-.+-..-..++++|..|.++.+.=+.++..+.+++|..|.++|.+....++. +.......++.|+.++..++..|
T Consensus 87 ~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~lr~~L 166 (593)
T PF06248_consen 87 ELKRELEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLKSSKFEELKILKLLKDEYSELRENL 166 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHHHHHHHHH
Confidence 777777788888999999999999999999999999999999999999999986 34556789999999999999999
Q ss_pred HHHHHHHHHHhHhccC
Q 003373 197 FYKVLEDLHAHLYNRG 212 (825)
Q Consensus 197 ~d~LieEL~~~lYlKs 212 (825)
...|-++..+.+-.+.
T Consensus 167 ~~~L~~~w~~lv~~~~ 182 (593)
T PF06248_consen 167 QYQLSEEWERLVQWDS 182 (593)
T ss_pred HHHHHHHHHhheeecC
Confidence 9999999999887654
No 6
>PF15469 Sec5: Exocyst complex component Sec5
Probab=97.80 E-value=0.00067 Score=68.99 Aligned_cols=139 Identities=20% Similarity=0.237 Sum_probs=117.8
Q ss_pred HHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHH------HHHHHHHHHHHHHHhccCcHHHHHHHHHHhHHHHHHHHHH
Q 003373 63 EVVDEVVHAYHTGFNKAIQNYSQILRLFSESAES------IKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLD 136 (825)
Q Consensus 63 ~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq~~------i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~iL~ 136 (825)
..|+.+|.+||..|-++-.+-..|-..+...... +..+.+.+..+.......-..|.+--.+...++.++.+|.
T Consensus 2 ~~lk~LV~~Nf~~Fv~~k~tid~i~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l~ 81 (182)
T PF15469_consen 2 EDLKSLVKENFDKFVSCKDTIDDIYEEFRNMKTEAQQDSGTEKLEESLNEASSKANSVFKPLLERREKADKLRNALEFLQ 81 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999877765 8999999999999998888888888999999999999999
Q ss_pred HHHHhhhcHHHHHHHHhccCHHHHHHHHHHHHHHhcccCCCCcCCcHHHHHHHHHhHHHHHHHHHH
Q 003373 137 QIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLE 202 (825)
Q Consensus 137 ~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~aL~~lr~~L~~~~~~L~d~Lie 202 (825)
.-..+-.+|.+|...|..++|..|++-..++..+++. ....+..++.+.++.+..-..+-+.|.+
T Consensus 82 r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~-~~~~~~vf~~v~~eve~ii~~~r~~l~~ 146 (182)
T PF15469_consen 82 RNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSLFEK-YKQQVPVFQKVWSEVEKIIEEFREKLWE 146 (182)
T ss_pred HHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987 3235566666666655444433333333
No 7
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=97.68 E-value=0.0028 Score=71.97 Aligned_cols=179 Identities=17% Similarity=0.301 Sum_probs=150.9
Q ss_pred CCCCchHHHHHhhccC----chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 003373 30 PRFDSLPHVVHILTSK----DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLA 105 (825)
Q Consensus 30 ~~f~~~~~~l~~L~s~----~~e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk~~L~ 105 (825)
++|||+.+.=.++.++ +...-...+++....++..+...|.++...=+.+=.....+...|.+=-++|..+|..-+
T Consensus 2 ~dfdpv~~in~lfp~e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~ 81 (383)
T PF04100_consen 2 PDFDPVDYINELFPDEQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAE 81 (383)
T ss_pred CCCCHHHHHHHhCCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999998543 446666777888888899999999988643344444455666667777778888888888
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhhcHHHHHHHHhccCHHHHHHHHHHHHHHhcc-cCCCCcCCcHH
Q 003373 106 EAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLER-EGLQTVGALQD 184 (825)
Q Consensus 106 ~~k~~L~~~~~~L~~L~~~s~~~~~~i~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~-~~L~~I~aL~~ 184 (825)
.+...+..-..++++|=.........|.+|.-+.-|...=++++.++..|+|.+++.+|.-...+++. .+..+|+-+..
T Consensus 82 ~sE~~V~~it~dIk~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F~~yksi~~I~~ 161 (383)
T PF04100_consen 82 ESEQMVQEITRDIKQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELLEHFKPYKSIPQIAE 161 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcccCcHHHHH
Confidence 88888888889999999999999999999999999999999999999999999999999988888851 27789999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhHh
Q 003373 185 VRSELTKLRGVLFYKVLEDLHAHLY 209 (825)
Q Consensus 185 lr~~L~~~~~~L~d~LieEL~~~lY 209 (825)
|...+...+..|.+.+.++++. +|
T Consensus 162 L~~~i~~l~~~L~~qI~~df~~-~f 185 (383)
T PF04100_consen 162 LSKRIDQLQNELKEQIFEDFEE-LF 185 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 9999999999999999999975 45
No 8
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=97.60 E-value=0.0041 Score=69.53 Aligned_cols=158 Identities=14% Similarity=0.192 Sum_probs=131.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 003373 48 EGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVT 127 (825)
Q Consensus 48 e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~ 127 (825)
..+.+.|.+....++..++.+...||..|-.+=.....|...+.+..+++..+...|.+-......-.....+.......
T Consensus 13 ~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~~~r~~ 92 (338)
T PF04124_consen 13 FSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQKISEERKK 92 (338)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678999999999999999999999999999999999999999999999999999977666655555555566666666
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHhccCHHHHHHHHHHHHHHhcccCCCCcCCcHHHHHHHHHhHHHHHHHHHHHHHHh
Q 003373 128 LRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAH 207 (825)
Q Consensus 128 ~~~~i~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~aL~~lr~~L~~~~~~L~d~LieEL~~~ 207 (825)
...+++-.+.+-+|..+|.-++..|.+++|.+|.++.....++..+ .-+++-++.+..+....-..+-..|+.-|+.-
T Consensus 93 ~~~~l~~~~~l~diLElP~Lm~~ci~~g~y~eALel~~~~~~L~~~--~~~~~lv~~i~~ev~~~~~~ml~~Li~~L~~~ 170 (338)
T PF04124_consen 93 ASLLLENHDRLLDILELPQLMDTCIRNGNYSEALELSAHVRRLQSR--FPNIPLVKSIAQEVEAALQQMLSQLINQLRTP 170 (338)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhcccHhhHHHHHHHHHHHHHh--ccCchhHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 6677777788888889999999999999999999999988777665 44588888998888887777777777776544
No 9
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.032 Score=66.84 Aligned_cols=173 Identities=13% Similarity=0.195 Sum_probs=132.9
Q ss_pred HHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 003373 36 PHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRN 115 (825)
Q Consensus 36 ~~~l~~L~s~~~e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~ 115 (825)
|.+.+++.....+.=+.+|+..-..=+..+..+-+.|||+|-.||.--.++.....+=+..|...-.+|.++-+.|-.+.
T Consensus 35 P~lRs~~d~~~~~~~~e~Le~~ir~~d~EIE~lcn~hyQdFidsIdEL~~Vr~daq~Lks~vsd~N~rLQ~~g~eLiv~~ 114 (800)
T KOG2176|consen 35 PTLRSVYDGNQHKPVMEKLENRIRNHDKEIEKLCNFHYQDFIDSIDELLKVRGDAQKLKSQVSDTNRRLQESGKELIVKK 114 (800)
T ss_pred hHHHHHHccCCcchHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 55556666666666677777666667899999999999999999999999988888888888888899999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhcHHHHHHHHhccCHHHHHHHHHHHHHHhcccCCCCcCCcHHHHHHHHHhHHH
Q 003373 116 KQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGV 195 (825)
Q Consensus 116 ~~L~~L~~~s~~~~~~i~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~aL~~lr~~L~~~~~~ 195 (825)
++|.+...-+......+++|..-=.+...=.|..++|++|+|+.|.+.+. +++..-=+.+.+..=+.-+-.+.-..+..
T Consensus 115 e~lv~~r~~~rnit~ai~~l~~Cl~vLEl~sK~~e~~s~kqyy~aLktle-~lE~~yL~~~~~~~~~~~i~~~Ip~ik~~ 193 (800)
T KOG2176|consen 115 EDLVRCRTQSRNITEAIELLTLCLPVLELYSKLQEQMSEKQYYPALKTLE-SLEKVYLPRVSNFRFLIVIQNRIPFIKEV 193 (800)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH-HHHHHHHHhcccchhhHHHhhcchHHHHH
Confidence 99999999888888888888887778888899999999999999988765 23222222333333333444444455666
Q ss_pred HHHHHHHHHHHhHh
Q 003373 196 LFYKVLEDLHAHLY 209 (825)
Q Consensus 196 L~d~LieEL~~~lY 209 (825)
+-++...++++-+.
T Consensus 194 i~~~~~~~~~e~L~ 207 (800)
T KOG2176|consen 194 IKSKSMSDFREWLE 207 (800)
T ss_pred HHHHHHHHHHHHHH
Confidence 67777777776663
No 10
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=96.58 E-value=0.075 Score=51.41 Aligned_cols=110 Identities=15% Similarity=0.259 Sum_probs=73.6
Q ss_pred hcCCCCCCchHHHHHhhc--------cCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHH
Q 003373 26 SWVAPRFDSLPHVVHILT--------SKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESI 97 (825)
Q Consensus 26 ew~~~~f~~~~~~l~~L~--------s~~~e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq~~i 97 (825)
.|-.|+|||..++=.+|. ..+....+.+|....+.+++.|+..|.+||..+-+-...=...-..++.-+..|
T Consensus 2 ~fl~~dFd~~~fan~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v 81 (132)
T PF10392_consen 2 AFLSPDFDPVQFANDLLKSTNNNSDSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSV 81 (132)
T ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 355699999999999996 446788899999999999999999999999999766555444444444444444
Q ss_pred HHHHHHHHHHHHHh-------ccCcHHHHHHHHHHhHHHHHHHHH
Q 003373 98 KELKVDLAEAKRRL-------GTRNKQLHQLWYRSVTLRHIISLL 135 (825)
Q Consensus 98 ~~lk~~L~~~k~~L-------~~~~~~L~~L~~~s~~~~~~i~iL 135 (825)
..+......-+..+ ......|++||...--.+.++..|
T Consensus 82 ~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~~t~~LLR~~~r~l 126 (132)
T PF10392_consen 82 ESLQSSYERLRSEVIEPYEKIQKLTSQLERLHQTSDLLRSVSRFL 126 (132)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444433 333444444444444444444444
No 11
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=96.46 E-value=0.0026 Score=61.49 Aligned_cols=126 Identities=13% Similarity=0.179 Sum_probs=38.5
Q ss_pred hcCCCCCCchHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 003373 26 SWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLA 105 (825)
Q Consensus 26 ew~~~~f~~~~~~l~~L~s~~~e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk~~L~ 105 (825)
++..++|+|-..+...-.-.+.+.-...|....+.++..|-++||++|++|-+-=.+...+-..|.+-+.-+..+++.+.
T Consensus 7 ~F~~~~Fd~d~Fl~~~~~~~~Le~L~~dL~~~~~~L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~~~~v~ 86 (133)
T PF06148_consen 7 EFTKPDFDVDEFLSSNRRYVSLEDLRKDLRSYSKELKNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQFREEVE 86 (133)
T ss_dssp -------------------------------------------------------------------HHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHH
Confidence 34458999988888732344778888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhhcHHHHHHH
Q 003373 106 EAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKL 151 (825)
Q Consensus 106 ~~k~~L~~~~~~L~~L~~~s~~~~~~i~iL~~Ie~l~~vP~kie~l 151 (825)
+.+..+......+...-.......+....|..+-.+..+=.++|.+
T Consensus 87 ~~~~~l~~~~~~i~~~l~~~~~l~~~k~~l~~~l~~~~~~~kle~l 132 (133)
T PF06148_consen 87 SVRDELDNTQEEIEDKLEERKELREEKALLKLLLDISESLEKLEDL 132 (133)
T ss_dssp HHHHS-STTHHHHHHHHHHHHHHHHHHHT-SSSSHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 9999999999988877777776666666555554444444444443
No 12
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.05 E-value=0.38 Score=57.29 Aligned_cols=190 Identities=14% Similarity=0.227 Sum_probs=145.3
Q ss_pred HHHHHhHhhcCCCCCCchHHHHHhhcc----CchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHH
Q 003373 18 EELARIEVSWVAPRFDSLPHVVHILTS----KDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSES 93 (825)
Q Consensus 18 ~~l~~I~~ew~~~~f~~~~~~l~~L~s----~~~e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~S 93 (825)
+++..|....+-++|+.+.+.=.++-. .+.+.-.++++..-..+++.|+.+|..+-+.=.+.=-+-..+...|.+=
T Consensus 5 ~v~~~I~q~~~t~~f~~v~~in~lfp~eqSL~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~eL 84 (793)
T KOG2180|consen 5 NVLYDINQMIPTPEFNFVEYINELFPAEQSLTNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEEL 84 (793)
T ss_pred hHHHHHHHhcCCcchhHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHH
Confidence 577788888888999999988887733 2556666777777778899999999865544444433334444444444
Q ss_pred HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhhcHHHHHHHHhccCHHHHHHHHHHHHHHhcc
Q 003373 94 AESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLER 173 (825)
Q Consensus 94 q~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~ 173 (825)
-.+|..+|+.-+.....+..-..++++|=........-|..|..+.-|...=+++..+++++.|-+|+..|.--+.+++-
T Consensus 85 ~~~i~eiks~ae~Te~~V~eiTrdIKqLD~AKkNLTtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai~~ll~~ 164 (793)
T KOG2180|consen 85 FQKIQEIKSVAESTEAMVQEITRDIKQLDFAKKNLTTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPLQAILQLLNH 164 (793)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHHHHHHHHH
Confidence 45555555555555555555567888888888888999999999999999999999999999999999999988888862
Q ss_pred -cCCCCcCCcHHHHHHHHHhHHHHHHHHHHHHHHh
Q 003373 174 -EGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAH 207 (825)
Q Consensus 174 -~~L~~I~aL~~lr~~L~~~~~~L~d~LieEL~~~ 207 (825)
..-.+|+-+..|+..+...+..|...+.+.+.+.
T Consensus 165 F~~Yk~v~~I~~Ls~si~~~k~~l~~qi~~df~~~ 199 (793)
T KOG2180|consen 165 FIAYKSVDEIANLSESIDKLKKSLLSQIFQDFKAA 199 (793)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2567888899999999999999998888888543
No 13
>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.95 E-value=0.35 Score=56.44 Aligned_cols=171 Identities=17% Similarity=0.226 Sum_probs=135.4
Q ss_pred HHHHhhccC--chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 003373 37 HVVHILTSK--DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTR 114 (825)
Q Consensus 37 ~~l~~L~s~--~~e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~ 114 (825)
++..+.++. ....+...|-+....++..++.+--.+|..|-.+=..++.|...+..++.....+--.+-+-......=
T Consensus 24 ~v~~l~~~~~e~l~ke~~~La~e~~~i~~q~q~La~~ny~t~id~A~~~~~i~~~~~~~~~~~~~l~l~~~~L~s~~~~f 103 (581)
T KOG2069|consen 24 YVRELTTKPLEELRKEKALLAEEAAKIDAQTQDLARDNYKTLIDTARNTDAIYQLFGRSRHDLKELSLQLPELTSPCKRF 103 (581)
T ss_pred HHHHHcCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHhhhHHHHH
Confidence 444444432 456677789889999999999999999999999999999999999999988877666544433333333
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHhhhcHHHHHHHHhccCHHHHHHHHHHHHHHhcccCCCCcCCcHHHHHHHHHhHH
Q 003373 115 NKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRG 194 (825)
Q Consensus 115 ~~~L~~L~~~s~~~~~~i~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~aL~~lr~~L~~~~~ 194 (825)
.+....+....-.-+-+++..+++-++..+|+.++..|....|.+|.++..-+.++-++.+.. +..++++.+....-.
T Consensus 104 ~~~~~~i~e~~~~~~~~l~~~~~l~ellelp~lM~~cir~~~~~ealel~a~~~RL~~~~~~~--pvi~~i~~~v~~tv~ 181 (581)
T KOG2069|consen 104 QDFAEEISEHRRLNSLTLDKHPQLLELLELPQLMDRCIRNGYYDEALELAAYASRLKQRFGTI--PVIQEIATEVEQTVQ 181 (581)
T ss_pred HHHHHHhhHhHHHHHHHHhhcchhHHHHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcccc--hHHHHHHHHHHHHHH
Confidence 444455555555666778888899999999999999999999999999999999988875554 889999999988888
Q ss_pred HHHHHHHHHHHHhHh
Q 003373 195 VLFYKVLEDLHAHLY 209 (825)
Q Consensus 195 ~L~d~LieEL~~~lY 209 (825)
.|-+.|++-|..-+=
T Consensus 182 ~ll~qL~~~l~~pl~ 196 (581)
T KOG2069|consen 182 KLLEQLIQQLRTPLQ 196 (581)
T ss_pred HHHHHHHHHHhhhhh
Confidence 888888888766553
No 14
>KOG2346 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.08 E-value=0.17 Score=57.63 Aligned_cols=195 Identities=14% Similarity=0.113 Sum_probs=133.7
Q ss_pred CCCCCCchHHHHHHHHHhHhhcCCCCCCchHHHHHhhccCchhHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHhHh
Q 003373 6 GLPISPEKAYLREELARIEVSWVAPRFDSLPHVVHILTSKDREGEVQILK---DQNDIIEEVVDEVVHAYHTGFNKAIQN 82 (825)
Q Consensus 6 ~~p~~~~~~~l~~~l~~I~~ew~~~~f~~~~~~l~~L~s~~~e~~~~~l~---~~~~~~~~~L~~vV~~h~~~Fn~sI~s 82 (825)
|.|-+||..... +-+.+.|||=-++..++...+++.-+..=. .+-..+|.+++-+|.|+|+-|-.+-.+
T Consensus 15 g~pagpdplspt--------DlngahFDpEvyldkL~REcpLaqLidsetdMV~qIRaLDSDmqtLVYENYNKFisATdT 86 (636)
T KOG2346|consen 15 GLPAGPDPLSPT--------DLNGAHFDPEVYLDKLPRECPLAQLIDSETDMVQQIRALDSDMQTLVYENYNKFISATDT 86 (636)
T ss_pred CCCCCCCCCCcc--------ccCCCCCCHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhchHHHHHHHhhcchhhhcchH
Confidence 677777765543 446689999999998887766544333222 223567999999999999999999877
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhhcHHHHHHHHhccCHHHHHH
Q 003373 83 YSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQ 162 (825)
Q Consensus 83 y~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~iL~~Ie~l~~vP~kie~lis~k~yl~A~~ 162 (825)
-.+|.+.|..--.....+-+...........-.+.|.+=...-.+....-.+|.++..+-..|.++...+....|=+|+.
T Consensus 87 irkmk~~f~~me~eMd~L~~~ms~i~~~s~~l~g~L~ekre~I~kLg~~~~llrkvqfifdLP~rLrkc~~~~aYG~avR 166 (636)
T KOG2346|consen 87 IRKMKSNFFGMEQEMDGLEEVMSSIQSKSDGLAGSLFEKRELIKKLGQRPPLLRKVQFIFDLPRRLRKCGRAPAYGAAVR 166 (636)
T ss_pred HHHHHhhhhhhcchhhhHHHHHHHHhhhhccccchhHHhHHHHHHhcCCccchhhhHHHhhhHHHHHHhccccccchhhc
Confidence 77777777666655555555555444433333333322222222233333567788888899999999999999999999
Q ss_pred HHHHHHHHhcccCCCCcCCcHHHHHHHHHhHHHHHHHHHHHHHHhHhccCCc
Q 003373 163 LHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLYNRGEY 214 (825)
Q Consensus 163 lL~~s~~~l~~~~L~~I~aL~~lr~~L~~~~~~L~d~LieEL~~~lYlKs~~ 214 (825)
.-..|...+..|+ +.+..++.+. ..+.++++++..|...+..-+.-
T Consensus 167 ~~~~A~~~L~qY~--~~psfq~~~~----~seei~~rl~~qL~~rlr~~~sg 212 (636)
T KOG2346|consen 167 GSSEATGKLRQYD--GRPSFQEDDV----PSEEIRLRLVAQLGTKLRSDSSG 212 (636)
T ss_pred cccccccchhhcC--CCCcHHHhcc----chHHHHHHHHHHHHHHhccCCCC
Confidence 8888888776643 4555554443 45677888999999988876544
No 15
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=91.78 E-value=2.2 Score=37.74 Aligned_cols=77 Identities=17% Similarity=0.161 Sum_probs=55.4
Q ss_pred CCCCCchHHHHHhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 003373 29 APRFDSLPHVVHILTSKD---REGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLA 105 (825)
Q Consensus 29 ~~~f~~~~~~l~~L~s~~---~e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk~~L~ 105 (825)
.++|||-.++=.+|...+ ...-..+|.......+..|+.+|..||..|-.+-..=..+-..+.+-++.+..++..+.
T Consensus 3 ~~~fd~~~~~~~~l~~~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~ 82 (87)
T PF08700_consen 3 SENFDVDEYFKDLLKNSSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQ 82 (87)
T ss_pred CCcCCHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999986654 34445677777888899999999999999987766555555555555555555544443
No 16
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.69 E-value=5.6 Score=46.57 Aligned_cols=134 Identities=17% Similarity=0.187 Sum_probs=85.8
Q ss_pred CCCCCCCCCchHHHHHHHHHhHhhcCCCCCCchHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHh
Q 003373 3 IFDGLPISPEKAYLREELARIEVSWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQN 82 (825)
Q Consensus 3 ~~~~~p~~~~~~~l~~~l~~I~~ew~~~~f~~~~~~l~~L~s~~~e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~s 82 (825)
.+.|-|..+++==.+ +.++..++||.=..+-..=...+.|.-.+.|+-+++.+..++-+++|+-|.+|-+-=.+
T Consensus 10 ~~~g~~~d~~kLcFd------k~eFmkedFdve~f~s~~R~~v~letLrddLrlylksl~~aMieLIN~DYADFVnLStn 83 (705)
T KOG2307|consen 10 LPNGFYIDESKLCFD------KTEFMKEDFDVERFMSLARQKVDLETLRDDLRLYLKSLQNAMIELINDDYADFVNLSTN 83 (705)
T ss_pred CCCCCCCCccccccC------hhhhccccCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhh
Confidence 455555555554444 56677788886544433335668888899999999999999999999999999876666
Q ss_pred hHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhccCcHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 003373 83 YSQILRLFSESAE-------SIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIA 142 (825)
Q Consensus 83 y~~i~~~i~~Sq~-------~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~iL~~Ie~l~ 142 (825)
--.+-..+..-+. .|..+|..+.++-..+..+.+++......-+.....+..+..||+|.
T Consensus 84 LVgld~aln~i~qpL~qlreei~s~rgsV~ea~~alr~q~se~~~~Re~k~~lldl~~v~~~ieKL~ 150 (705)
T KOG2307|consen 84 LVGLDDALNKIEQPLNQLREEIKSTRGSVGEAERALRQQCSELCSNREKKIELLDLIYVLVAIEKLS 150 (705)
T ss_pred hccHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555444 44444555555555555455555555555555555555555554443
No 17
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=89.30 E-value=48 Score=41.50 Aligned_cols=184 Identities=16% Similarity=0.190 Sum_probs=115.5
Q ss_pred hcCCCCCCchHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHhHhhHHHHHHHHHHHHHHHHHH
Q 003373 26 SWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFN----KAIQNYSQILRLFSESAESIKELK 101 (825)
Q Consensus 26 ew~~~~f~~~~~~l~~L~s~~~e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn----~sI~sy~~i~~~i~~Sq~~i~~lk 101 (825)
.+.+++||+..-+=..+.+.+.+....+++.....+...|+-.+.+=...+- .++.+-=.++..+..=+..+..+|
T Consensus 4 ~f~~~~FD~~~WIN~~~~~~~~~~~~~~~d~~ls~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~ 83 (766)
T PF10191_consen 4 AFSDDDFDVKAWINAALKSRSKDEALEKADAHLSSLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQ 83 (766)
T ss_pred hhCcCCCCHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3556899998888888866544433334433333444444433322222222 222222345555555566666666
Q ss_pred HHHHHHHHHhccCc-------HHHHHHHHHHhHHHHHHHHHHHHHHhhhcHHHHHHHHhccCHHHHHHHHHHHHHHhccc
Q 003373 102 VDLAEAKRRLGTRN-------KQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLERE 174 (825)
Q Consensus 102 ~~L~~~k~~L~~~~-------~~L~~L~~~s~~~~~~i~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~ 174 (825)
+.+...++.+..-. ..|.+|-.-.......-+.|.+=+..-..-..|+.++..++|..+.+-|.+..+-+.-
T Consensus 84 ~~~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~EA~~w~~l~~~v~~~~~~~d~~~~a~~l~~m~~sL~~- 162 (766)
T PF10191_consen 84 EQMASVQEEIKAVEQDTAQSMAQLAELDSVKSRMEAARETLQEADNWSTLSAEVDDLFESGDIAKIADRLAEMQRSLAV- 162 (766)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-
Confidence 66666655553211 1233333333344444455556667777888999999999999999998877777754
Q ss_pred CCCCcCCcHHHHHHHHHhHHHHHHHHHHHHHHhHhcc
Q 003373 175 GLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLYNR 211 (825)
Q Consensus 175 ~L~~I~aL~~lr~~L~~~~~~L~d~LieEL~~~lYlK 211 (825)
|.+++...+=|.+|+..++.|..++--.|...+=.+
T Consensus 163 -l~~~pd~~~r~~~le~l~nrLEa~vsp~Lv~al~~~ 198 (766)
T PF10191_consen 163 -LQDVPDYEERRQQLEALKNRLEALVSPQLVQALNSR 198 (766)
T ss_pred -HcCCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 778999999999999999999988887777766443
No 18
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.71 E-value=35 Score=41.46 Aligned_cols=160 Identities=9% Similarity=0.087 Sum_probs=110.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHHH--HH-HHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH
Q 003373 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTG--FN-KAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLW 122 (825)
Q Consensus 46 ~~e~~~~~l~~~~~~~~~~L~~vV~~h~~~--Fn-~sI~sy~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~ 122 (825)
..+..+..+......+++.|+.++.+--.- +| ..|+.-.. .+.---...+++...+.....+-..-++..+.|=
T Consensus 35 qi~~~le~~~~ee~~~~~~L~~lL~q~~~ie~~~~~~l~r~~~---~L~~v~~da~el~~~i~nt~~lAe~Vs~kVr~lD 111 (773)
T KOG0412|consen 35 QIDLLLERIAREEARVDKDLEALLSQQQTIEGENMSALTRSAE---NLLTVEGDAKELTDAIKNTCVLAETVSGKVRALD 111 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhh---hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777778888999999999874332 44 34433333 3333333444444544444444444578889999
Q ss_pred HHHhHHHHHHHHHHHHHHhhhcHHHHHHHHhccCHHHHHHHHHHHHHH----hcccCCCCcCCcHHHHHHHH---HhHHH
Q 003373 123 YRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALM----LEREGLQTVGALQDVRSELT---KLRGV 195 (825)
Q Consensus 123 ~~s~~~~~~i~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~----l~~~~L~~I~aL~~lr~~L~---~~~~~ 195 (825)
.+.-..++.++..++|-.++.+-+-+..-|..++|..|...+.+.+.+ ++...-..+.+...++..+. +-++.
T Consensus 112 la~~Rv~~clq~v~dvrdlk~C~~gv~~Al~seDyE~AA~~IhRflslD~~~i~~~~~~~~~~ts~i~~~~~~L~~a~e~ 191 (773)
T KOG0412|consen 112 LAQNRVNECLQRVDDVRDLKNCIEGVDTALESEDYEKAATHIHRFLSLDQALIESRFAKQVVPTSEISDPYETLKEAKER 191 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHhhhhhhccCCchhhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988765 33333445556666655443 44455
Q ss_pred HHHHHHHHHHHhH
Q 003373 196 LFYKVLEDLHAHL 208 (825)
Q Consensus 196 L~d~LieEL~~~l 208 (825)
|...+-++++..+
T Consensus 192 L~~l~~~~f~eA~ 204 (773)
T KOG0412|consen 192 LSKLFKERFTEAV 204 (773)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665544
No 19
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=85.41 E-value=91 Score=37.35 Aligned_cols=187 Identities=16% Similarity=0.212 Sum_probs=108.8
Q ss_pred CchHHHHHHHHHhHhhcCCCCCCchHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHH
Q 003373 11 PEKAYLREELARIEVSWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLF 90 (825)
Q Consensus 11 ~~~~~l~~~l~~I~~ew~~~~f~~~~~~l~~L~s~~~e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i 90 (825)
++...|++++..+....++ +.|-..|.+.+ .|++..+.++..|.++=..--|+|-+-=..-.+..+.|
T Consensus 17 ~~~~~le~~~~~~~~~~~~------e~v~~~lktg~------~lr~y~~~ve~~l~k~e~~Siqdyi~es~~~~~lhNqi 84 (683)
T KOG1961|consen 17 SEDISLEEVLSQLQECLDD------ELVKEALKTGD------DLREYSKQVENELRKAERKSIQDYIKESENLASLHNQI 84 (683)
T ss_pred hhHHHHHHHHHHHHHhcch------HHHHHHHhcCC------cchHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhHhhhH
Confidence 3445577777777776661 22333443221 22333344444444444333333333333333444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhHHHHHHH-------HHH-HHHHhhhcHHHHHHHHh----ccCHH
Q 003373 91 SESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIIS-------LLD-QIEGIAKVPARIEKLIA----GKQYY 158 (825)
Q Consensus 91 ~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~-------iL~-~Ie~l~~vP~kie~lis----~k~yl 158 (825)
..+..-+.+|-..|..=...|+.-..+++.|-.+|..-.--++ -|. -|+.+.--|+.|...+. +..|.
T Consensus 85 ~~cd~Vl~rme~~L~~FQ~~L~sissDI~~lqekS~~m~~~L~Nrq~v~s~Ls~fVdd~iVpp~lI~~I~~g~vne~~f~ 164 (683)
T KOG1961|consen 85 RACDSVLERMETMLSSFQSDLSSISSDIKILQEKSNDMQLRLENRQAVESKLSQFVDDLIVPPELIKTIVDGDVNEPEFL 164 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHhccccCCHHHHHHHHcCCCCchHHH
Confidence 5555566666666666666666666666666555553222221 122 24555555666665554 45899
Q ss_pred HHHHHHHHHHHHhc-ccCCCCcCCcHHHHHHHHHhHHHHHHHHHHHHHHhHh
Q 003373 159 AAVQLHAQSALMLE-REGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLY 209 (825)
Q Consensus 159 ~A~~lL~~s~~~l~-~~~L~~I~aL~~lr~~L~~~~~~L~d~LieEL~~~lY 209 (825)
+|.+.|..=++..+ ..+..+-.|+.|++.-|+..+......+-+=|-.-||
T Consensus 165 ~~LeeL~~Kl~~v~~dq~~k~a~a~~Dv~~lLdkLR~KAi~kir~~IlqkI~ 216 (683)
T KOG1961|consen 165 EALEELSHKLKLVELDQSNKDAKALKDVEPLLDKLRLKAIEKIREFILQKIK 216 (683)
T ss_pred HHHHHHHHHHHhhhhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988 6789999999999999998887665554444444443
No 20
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=81.37 E-value=38 Score=41.92 Aligned_cols=149 Identities=12% Similarity=0.158 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHH-------HHHHHHHhHHHHHH
Q 003373 60 IIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQL-------HQLWYRSVTLRHII 132 (825)
Q Consensus 60 ~~~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L-------~~L~~~s~~~~~~i 132 (825)
.+.+.|..+=..+-+.+-.+=..-..+...|.++...+..|-..|......|..-++++ +.|-.....++.++
T Consensus 9 ~L~~eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~ 88 (701)
T PF09763_consen 9 RLSKELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLL 88 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHH
Confidence 34444444444444555555555667778888888888888888888888888888777 44555556677777
Q ss_pred HHHHHHHHhhhcHHHHHHHHhccCH---------HHHHHHHHHHHHHh------cccCCCCcCCcHHHHHHHHHhHHHHH
Q 003373 133 SLLDQIEGIAKVPARIEKLIAGKQY---------YAAVQLHAQSALML------EREGLQTVGALQDVRSELTKLRGVLF 197 (825)
Q Consensus 133 ~iL~~Ie~l~~vP~kie~lis~k~y---------l~A~~lL~~s~~~l------~~~~L~~I~aL~~lr~~L~~~~~~L~ 197 (825)
+-|+.|=.-..+|+.-...+.+..+ ..|...|..|+..+ ..+++..+.|+++=|..++.....+.
T Consensus 89 ~eL~~Ll~~l~i~~~~l~~L~~~~l~~~~~l~~~e~a~~~L~~Al~~i~~~~~~~~~~~~~M~Av~er~~~~~~~~~~F~ 168 (701)
T PF09763_consen 89 NELENLLDTLSIPEEHLEALRNASLSSPDGLEKIEEAAEALYKALKAIRPDLEKLDPGLGQMRAVKERREEYEKVSDKFC 168 (701)
T ss_pred HHHHHHHHhcCCCHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766666788887777776655 45777788888883 33588889999999999999999999
Q ss_pred HHHHHHHHHhH
Q 003373 198 YKVLEDLHAHL 208 (825)
Q Consensus 198 d~LieEL~~~l 208 (825)
..+.+.|.+..
T Consensus 169 ~r~~~~l~~~F 179 (701)
T PF09763_consen 169 KRLSRFLNNMF 179 (701)
T ss_pred HHHHHHHHHHH
Confidence 99999987765
No 21
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=80.68 E-value=6.1 Score=46.63 Aligned_cols=129 Identities=14% Similarity=0.140 Sum_probs=71.8
Q ss_pred hhhhHHHHHHHHHHHHhCCCCCcC-cccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCccccccCCCcccccccc
Q 003373 593 ASIYRPVLQFTDKVASMLPQKYSQ-LGNDGLLAFVENFVKDHLLPTMFVDYRKGVQQAISSPAAFRPRAHTAATYVPSIE 671 (825)
Q Consensus 593 ~~Iy~p~l~Fi~~i~~~l~~~~~~-~~~~~l~~Fl~~Fv~~~FLp~l~~~~~~~~~~a~~~~dAfk~~~~~~~~~~~~l~ 671 (825)
..+-..++.|=+++...+. |.+ ..+.++.-|+.+=+-+.+|.-=+....+++++++.++|||+++..... ....
T Consensus 97 ~HlI~e~~~FD~~L~~~~~--y~~d~~~~~~~vL~~~~~~~~Wl~~E~~~a~~r~~~i~~s~~aw~~~~~~~~---~~~~ 171 (494)
T PF04437_consen 97 SHLIDEILSFDKELRSLYG--YPGDWQGSTLDVLCQPDWFDRWLNAEKEFALERFDEIISSPDAWQIDYDDVE---ADSD 171 (494)
T ss_dssp HHHHHHHHHHHHHHHHTS-----S------CGGGS-HHHHHHHHHHHHHHHHHHHH---------------HT---TSSG
T ss_pred HHHHHHHHHHHHHHHHHcC--CCCccchhHHHHhcchHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhcccc---CCch
Confidence 4455677888888888862 111 122233333333223556566566777899999999999999854321 0112
Q ss_pred cCCcccchHHHHHHHHHHHHHHHHhhHH--hHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 003373 672 KGRPVLQGLLAIDFLAKEVLGWAQAMPK--FAADLV-KYVQTFLERTYERCRTSYMEAV 727 (825)
Q Consensus 672 ~~rPil~~~~~v~~~~~el~~~l~t~p~--y~~~~~-~lv~~~L~~y~e~c~~~y~~lv 727 (825)
..+|= .+|..|..++..+..-...+|. |+-.|+ .+=+.+|.+|++++...|+...
T Consensus 172 ~~k~t-~~A~~~~~Ll~~it~ry~~L~~~~~rl~Fl~~iql~lld~~~~~L~~~~~~~~ 229 (494)
T PF04437_consen 172 ELKPT-KSAERFVKLLESITDRYRPLPSLSHRLRFLIDIQLPLLDDYHDRLSQSLEAFE 229 (494)
T ss_dssp GGG-G-GHHHHHHHHHHHHHHHHHHHHH---GG--GHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hhcch-HHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33454 7899999999999999999994 777788 8888999999999999987644
No 22
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=75.14 E-value=86 Score=34.67 Aligned_cols=77 Identities=16% Similarity=0.255 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHH-----HHHHHHHHHHHHHHHHHHH-HHHHhccCcHHHHHH
Q 003373 48 EGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQIL-----RLFSESAESIKELKVDLAE-AKRRLGTRNKQLHQL 121 (825)
Q Consensus 48 e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~~i~-----~~i~~Sq~~i~~lk~~L~~-~k~~L~~~~~~L~~L 121 (825)
.....+|++....+...++..+..+.+.++..-..+..-. ..+...++++..+++.|.. .+..|..++..|.++
T Consensus 146 ~~~~~~l~~~~~~l~~~~~~~l~~~~~~L~~l~~~l~~~~~~~p~~~l~~~~~~Ld~l~~rL~~~~~~~l~~~~~~L~~l 225 (319)
T PF02601_consen 146 RELLQRLDELRQRLNRAMRNRLQRKRQRLNQLAKRLQLQSRRLPERKLEQQQQRLDELKQRLKQAIQQKLQRKRQRLQNL 225 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334566666677777777777777777766666665533 5677777777777777765 566666666666666
Q ss_pred HHH
Q 003373 122 WYR 124 (825)
Q Consensus 122 ~~~ 124 (825)
..+
T Consensus 226 ~~~ 228 (319)
T PF02601_consen 226 SNR 228 (319)
T ss_pred HHh
Confidence 533
No 23
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=69.06 E-value=13 Score=40.84 Aligned_cols=80 Identities=16% Similarity=0.132 Sum_probs=68.3
Q ss_pred cCcHHHHHHHHHHhHHHHHHHHHHHHHHhhhcHHHHHHHHhccCHHHHHHHHHHHHHHhcccCCCCcCCcHHHHHHHHHh
Q 003373 113 TRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKL 192 (825)
Q Consensus 113 ~~~~~L~~L~~~s~~~~~~i~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~aL~~lr~~L~~~ 192 (825)
...++|.+|-.....++++-++-..+-=..++|+-|+.+|.+++|.+|+..+- ++.+.++ .+-+.=|+.||+.-
T Consensus 146 Fd~del~~Lv~~va~~~~a~~L~~sLgl~~k~~d~V~~LI~~g~~ieAv~fi~-~f~L~dk-----fpPv~lLk~yl~~~ 219 (290)
T PF07899_consen 146 FDEDELLKLVVSVARRKQAPELCRSLGLSDKMPDIVEKLIKKGKQIEAVRFIY-AFGLVDK-----FPPVPLLKSYLEDS 219 (290)
T ss_pred cCHHHHHHHHHHhcchHhhHHHHHHcCchhhhHHHHHHHHHCCCccchHHHHH-HHcCCCC-----CCCHHHHHHHHHHH
Confidence 35789999999999999999999988888999999999999999999999954 7888777 44566799999887
Q ss_pred HHHHHH
Q 003373 193 RGVLFY 198 (825)
Q Consensus 193 ~~~L~d 198 (825)
+++-..
T Consensus 220 k~~~~~ 225 (290)
T PF07899_consen 220 KKAAKR 225 (290)
T ss_pred HHHHHH
Confidence 776533
No 24
>PRK11637 AmiB activator; Provisional
Probab=66.04 E-value=1.7e+02 Score=33.95 Aligned_cols=145 Identities=12% Similarity=0.180 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 003373 47 REGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSV 126 (825)
Q Consensus 47 ~e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~ 126 (825)
.+.++..++...+.+++.++.+=.+ .+........+...|...+.++..+...+...+..|.....+|.++-.+-.
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~----~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQ----RASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555544422111 122222233344444444444444444444444444444444444433322
Q ss_pred HHHH-HHHHHHHHHHhhhcHHHHHHHHhccCHHHHHHHHHHHHHHhcccCCCCcCCcHHHHHHHHHhHHHHH
Q 003373 127 TLRH-IISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLF 197 (825)
Q Consensus 127 ~~~~-~i~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~aL~~lr~~L~~~~~~L~ 197 (825)
+.+. +=+.+..+-.--..+ -++.+++...+-.+.+++. -+..+...+-.-|..+.+.+.+|..++..|-
T Consensus 121 ~~~~~l~~rlra~Y~~g~~~-~l~vLl~a~~~~~~~r~~~-~l~~i~~~d~~~l~~l~~~~~~L~~~k~~le 190 (428)
T PRK11637 121 AQERLLAAQLDAAFRQGEHT-GLQLILSGEESQRGERILA-YFGYLNQARQETIAELKQTREELAAQKAELE 190 (428)
T ss_pred HHHHHHHHHHHHHHHcCCCc-HHHHHhcCCChhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 222223333322322 4666666665544443221 1222333344456666777777776666654
No 25
>KOG2033 consensus Low density lipoprotein B-like protein [Lipid transport and metabolism]
Probab=61.76 E-value=81 Score=38.36 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 003373 62 EEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGI 141 (825)
Q Consensus 62 ~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~iL~~Ie~l 141 (825)
...|+..|-+-|.+.-.+--+-..+.+.-..--+.|+.++.+...-+..-..+++-+.+++-..+.|. -+--+|..|
T Consensus 37 rEELRqmVGeRYRDLleAADtI~hM~sla~~L~~~I~~t~~ncrsL~a~svA~tp~raeqnp~~e~~Y---g~aaqVKyL 113 (863)
T KOG2033|consen 37 REELRQMVGERYRDLLEAADTIRHMCSLADKLASDIANTRVNCRSLHANSVAKTPGRAEQNPAGEHLY---GTAAQVKYL 113 (863)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCcchhhcCchhhHHH---HHHHHHHHH
Confidence 34566666666666655544444444444444445555555544444334455677777774333333 345688899
Q ss_pred hhcHHHHHHHHhccCHHHHHHHHHHHH
Q 003373 142 AKVPARIEKLIAGKQYYAAVQLHAQSA 168 (825)
Q Consensus 142 ~~vP~kie~lis~k~yl~A~~lL~~s~ 168 (825)
...|++|=..+.+.+|++|+.++..+-
T Consensus 114 v~~PE~IWg~lD~s~fl~At~ly~~~~ 140 (863)
T KOG2033|consen 114 VSSPELIWGHLDSSEFLDATVLYCMVE 140 (863)
T ss_pred HhCHHHhhccccccchHHHHHHHHHHH
Confidence 999999999999999999999876554
No 26
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=59.46 E-value=2.5e+02 Score=33.48 Aligned_cols=121 Identities=21% Similarity=0.319 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhH-------HHHHHHHHHH-HHHhhhcHHHHHHHHhcc---CH
Q 003373 89 LFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVT-------LRHIISLLDQ-IEGIAKVPARIEKLIAGK---QY 157 (825)
Q Consensus 89 ~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~-------~~~~i~iL~~-Ie~l~~vP~kie~lis~k---~y 157 (825)
.|.+|.+.+..|.+.|..=+..|+.-+.++..|-.+|.+ -+.+.+.|.. |+.+.=-|+-|...+.+. +|
T Consensus 22 ~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i~ipP~lI~~I~~~~v~e~~ 101 (508)
T PF04129_consen 22 QIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDIVIPPDLIRSICEGPVNEQY 101 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCHHHHHhHhcCCCCHHH
Confidence 345555555555555555555555555555555555553 3344444544 455555555555554432 45
Q ss_pred HH-HHHHHHHHHHHhcccCCCCcCCcHHHHHHHHHhHHHHHHHHHHHHHHhHh
Q 003373 158 YA-AVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLY 209 (825)
Q Consensus 158 l~-A~~lL~~s~~~l~~~~L~~I~aL~~lr~~L~~~~~~L~d~LieEL~~~lY 209 (825)
.. +.+++.+-..........+..|.+|++..|+..+..-.+.+-+=|-..|+
T Consensus 102 ~~~~~~~~~k~~~~~~~~~~~~~~a~~d~~~~Le~L~~ka~~rir~fl~~kI~ 154 (508)
T PF04129_consen 102 IEELLELLKKKIFFSKDQSFKDSKAIKDVKPELEKLKNKAVERIRDFLLKKIK 154 (508)
T ss_pred HHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 46777766666666678999999999999998888776666555555555
No 27
>PF12854 PPR_1: PPR repeat
Probab=59.35 E-value=15 Score=26.65 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHhhCChHHHHHHHH
Q 003373 315 HVKYLQTMVECLCILGKVAAAGAIIC 340 (825)
Q Consensus 315 s~~yi~~lve~L~~LgkL~~Al~~i~ 340 (825)
.+.| .+||.++++-|++.+|.+++.
T Consensus 7 ~~ty-~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 7 VVTY-NTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred HhHH-HHHHHHHHHCCCHHHHHHHHH
Confidence 4445 899999999999999998764
No 28
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.31 E-value=3.9e+02 Score=32.81 Aligned_cols=138 Identities=16% Similarity=0.093 Sum_probs=97.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-H--HhH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHH
Q 003373 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFN-K--AIQ----NYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQL 118 (825)
Q Consensus 46 ~~e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn-~--sI~----sy~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L 118 (825)
......++|-+....++..|..-|-..|.+.- . .+. .-..+...+++-|+.|+.||..+.+-.+.+..+.-.|
T Consensus 72 ~ia~q~~~L~q~lr~ldrqLh~qv~~Rh~allaQat~~~~~d~~l~sl~~~v~~lqs~i~riknd~~epyk~i~~kt~vl 151 (797)
T KOG2211|consen 72 RIATQCDDLTQKLRELDRQLHAQVLKRHMALLAQATEELFEDLELRSLLVKVAELQSEIKRIKNDNKEPYKIIWLKTMVL 151 (797)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 44566667776667777777766555444432 1 122 3345667788888889999999999888888888888
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhcHHHHHHHHh--ccCHHHHHHHHHHHHHHhcccCCCCcCCcHHHHHHHH
Q 003373 119 HQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIA--GKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELT 190 (825)
Q Consensus 119 ~~L~~~s~~~~~~i~iL~~Ie~l~~vP~kie~lis--~k~yl~A~~lL~~s~~~l~~~~L~~I~aL~~lr~~L~ 190 (825)
.+|-...-..++...+|+-=..|+ .+.+ .+....|.+.+.+=..+++..+|.+|.-+..=+.++.
T Consensus 152 ~rLhva~~lLrrsgr~l~LskkL~-------~l~~~~~~d~traaq~lneLd~l~e~~dlsgIdvId~el~fv~ 218 (797)
T KOG2211|consen 152 TRLHVAENLLRRSGRALELSKKLA-------SLNSSMVVDATRAAQTLNELDSLLEVLDLSGIDVIDKELMFVS 218 (797)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------hhhccCCHhHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 888888888888888886555555 2221 2346788888888888999989999877665444443
No 29
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=59.30 E-value=2.4e+02 Score=29.90 Aligned_cols=120 Identities=13% Similarity=0.206 Sum_probs=94.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CcHHHHHHH
Q 003373 45 KDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNY-SQILRLFSESAESIKELKVDLAEAKRRLGT-RNKQLHQLW 122 (825)
Q Consensus 45 ~~~e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy-~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~-~~~~L~~L~ 122 (825)
++....+..+-+....+..+....+..=.+.|...+.++ ..-+..|+..|.++..-|=.+-.||..+.+ .++++++-.
T Consensus 84 S~~G~aL~~~G~A~~kla~~~~~~~~~v~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLd~D~~K~r~~k~~~eE~~~A~ 163 (223)
T cd07615 84 STFGNALLDVGESMKQMAEVKDSLDINVKQNFIDPLQLLQDKDLKEIGHHLKKLEGRRLDFDYKKKRQGKIPDEEIRQAV 163 (223)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 356788888888889999999999999999999999999 577889999999999999999999999987 477777766
Q ss_pred HHHhH-----HHHHHHHHHH-HHHhhhcHHHHHHHHhccCHHHHHHHHHH
Q 003373 123 YRSVT-----LRHIISLLDQ-IEGIAKVPARIEKLIAGKQYYAAVQLHAQ 166 (825)
Q Consensus 123 ~~s~~-----~~~~i~iL~~-Ie~l~~vP~kie~lis~k~yl~A~~lL~~ 166 (825)
.+-.+ ...|..+|+. +|.++++-.-|++-+. -|-.|.++|.+
T Consensus 164 ~kfees~E~a~~~M~n~le~e~e~~~~L~~lv~AQl~--Yh~~a~eiL~~ 211 (223)
T cd07615 164 EKFEESKELAERSMFNFLENDVEQVSQLSVLIEAALD--YHRQSTEILED 211 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 66554 5678888887 8888777777766553 22344444443
No 30
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.17 E-value=2.8e+02 Score=32.78 Aligned_cols=160 Identities=13% Similarity=0.083 Sum_probs=82.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccCcHHHH---HH
Q 003373 48 EGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESI---KELKVDLAEAKRRLGTRNKQLH---QL 121 (825)
Q Consensus 48 e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq~~i---~~lk~~L~~~k~~L~~~~~~L~---~L 121 (825)
.....+|+.....+.+.+.. +-.++..++.+++.|+.+...++...... ...=..+..+-+.+.+-.+++. +.
T Consensus 280 ~~~i~~l~~~l~~l~~~~~~-~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~ 358 (503)
T KOG2273|consen 280 KEKIDKLEQQLKKLSKQVQR-LVKRRRELASNLAELGKALAQLSALEGETDELSEALSGLAKVIESLSKLLEKLTAEKDS 358 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 34455666666667777777 77788999999999999999999888854 3333344444444433322221 11
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhcHHHHHHHHhccCHHHHHHHHHHHHHHhcccCCCCcCCcHHHHHHHHHhHHHHHHHHH
Q 003373 122 WYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVL 201 (825)
Q Consensus 122 ~~~s~~~~~~i~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~aL~~lr~~L~~~~~~L~d~Li 201 (825)
-.=...+++.|+. ++.++.+.+.-.. ....+..|...+...-..+++...+...-....+..+...+-.....-+
T Consensus 359 ~~~~~~l~~~i~~---~~~~k~~~~~r~~--~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~k~~~~~~e~~~~~~~~ 433 (503)
T KOG2273|consen 359 KKLAEQLREYIRY---LESVKSLFEQRSK--ALQKLQEAQRELSSKKEQLSKLKKKNRSSFGFDKIDLAEKEIEKLEEKV 433 (503)
T ss_pred HHhHHHHHHHHHH---HHHHHHHHHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHH
Confidence 1112223333333 3333333333322 3334445555554444444432111111012333334444444444566
Q ss_pred HHHHHhHhccCC
Q 003373 202 EDLHAHLYNRGE 213 (825)
Q Consensus 202 eEL~~~lYlKs~ 213 (825)
.++.+.++.+..
T Consensus 434 ~~~~~~~~~~~~ 445 (503)
T KOG2273|consen 434 NELEELLALKEL 445 (503)
T ss_pred HHHHHHHHhhhH
Confidence 777777776653
No 31
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=57.49 E-value=2.6e+02 Score=29.69 Aligned_cols=124 Identities=18% Similarity=0.218 Sum_probs=94.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CcHHHHHHH
Q 003373 45 KDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYS-QILRLFSESAESIKELKVDLAEAKRRLGT-RNKQLHQLW 122 (825)
Q Consensus 45 ~~~e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~-~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~-~~~~L~~L~ 122 (825)
++....+..+-+....+..+-...+..=.+.|...+.+|. .-+..|+..|.++..-|=.+-.||..+.. .+++|+.-.
T Consensus 84 S~~G~aL~~~G~A~~kla~~~~~~~~~i~~~fl~PL~~~~~~dik~i~k~RKkLe~rRLd~D~~K~r~~k~~eeElr~A~ 163 (223)
T cd07613 84 CNFGPALGDVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQAL 163 (223)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCCCcHHHHHHHH
Confidence 3557778888888888888888888888899999999976 56678999999999999999999999975 478888876
Q ss_pred HHHhH-----HHHHHHHHHH-HHHhhhcHHHHHHHHhccCHHHHHHHHHHHHHH
Q 003373 123 YRSVT-----LRHIISLLDQ-IEGIAKVPARIEKLIAGKQYYAAVQLHAQSALM 170 (825)
Q Consensus 123 ~~s~~-----~~~~i~iL~~-Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~ 170 (825)
.+-.+ ...|..+|+. +|.++++-+-|++-+. -|-+|.++|.+-..-
T Consensus 164 ~kFees~E~a~~~M~n~l~~e~e~~~~L~~fveAQl~--Yh~qa~eiL~~l~~~ 215 (223)
T cd07613 164 EKFDESKEIAESSMFNLLEMDIEQVSQLSALVQAQLE--YHKQATQILQQVTVK 215 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 66554 4445568888 8888877777766553 334555555544333
No 32
>PTZ00464 SNF-7-like protein; Provisional
Probab=55.41 E-value=2.7e+02 Score=29.35 Aligned_cols=71 Identities=15% Similarity=0.161 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHhccCHHHHHHHHHHHHHHhcccCCCCcCCcHHHHHHHHHhHHHHHHHHHHHHHHhH
Q 003373 131 IISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHL 208 (825)
Q Consensus 131 ~i~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~aL~~lr~~L~~~~~~L~d~LieEL~~~l 208 (825)
+-++..+...|.++-..|+..-.+.....|...=..+++.+++ .+ +|.-+.+|..++..+-.. .+|+++.|
T Consensus 77 l~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k-~i-~id~Vd~l~Dei~E~~e~-----~~EI~e~L 147 (211)
T PTZ00464 77 QDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFK-KL-NVDKVEDLQDELADLYED-----TQEIQEIM 147 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 4445556667777777888888888888999999999999998 66 788888888888765543 45665555
No 33
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=55.14 E-value=1.2e+02 Score=33.98 Aligned_cols=126 Identities=17% Similarity=0.248 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHH
Q 003373 47 REGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSE-SAESIKELKVDLAEAKRRLGTRNKQLHQLWYRS 125 (825)
Q Consensus 47 ~e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~-Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s 125 (825)
...++..|.+....++..+..++. .|+....-+..-..+...+.. -++.+..+|..|.+.+..|..++.+|.+|-.+-
T Consensus 161 L~~D~~~L~~~~~~l~~~~~~l~~-~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el 239 (325)
T PF08317_consen 161 LQEDYAKLDKQLEQLDELLPKLRE-RKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEEL 239 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555544444333 335566666666666555552 355666666666666666666666666665554
Q ss_pred hHHHHHHHHHHHHHHhhhcHHHHHHHHhccCHHHHHHHHHHHHHHhcccCCCCcCCcHHHHHHHHH
Q 003373 126 VTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTK 191 (825)
Q Consensus 126 ~~~~~~i~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~aL~~lr~~L~~ 191 (825)
...+.-++ .+-.++. +...-|.++-+..+.-.-|+..-+..|+..+..
T Consensus 240 ~~l~~~i~----------------~~~~~k~--~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~ 287 (325)
T PF08317_consen 240 EELEEKIE----------------ELEEQKQ--ELLAEIAEAEKIREECRGWTRSEVKRLKAKVDA 287 (325)
T ss_pred HHHHHHHH----------------HHHHHHH--HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 44443332 2222221 222223344444444345555556666666544
No 34
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=54.02 E-value=1.2e+02 Score=37.23 Aligned_cols=101 Identities=15% Similarity=0.312 Sum_probs=61.9
Q ss_pred CCCCCchHHHHHHHHHh-----HhhcCCC-CCCc-------------------------hHHHHHhhc----cCchhHHH
Q 003373 7 LPISPEKAYLREELARI-----EVSWVAP-RFDS-------------------------LPHVVHILT----SKDREGEV 51 (825)
Q Consensus 7 ~p~~~~~~~l~~~l~~I-----~~ew~~~-~f~~-------------------------~~~~l~~L~----s~~~e~~~ 51 (825)
+|.+||.+++.+++..+ |.+|-.. +-+. +..++.+|+ ..+.|.++
T Consensus 93 lP~~~d~~~l~~lf~~lF~~~~D~~Wl~ai~~~~w~~L~~lL~~~~~~~~~~~~~~~~~ll~Ai~~Ls~~I~a~glepel 172 (643)
T PF10136_consen 93 LPAPPDPNDLSDLFNLLFPRPSDAEWLEAIPDETWLRLFELLGAEEEEDQDASPHWRQELLDAIEMLSYRIAAEGLEPEL 172 (643)
T ss_pred CCCCCChhHHHHHHHHHCCCCCcHHHHHhCCHHHHHHHHHHhCcCccccchhHHHHHHHHHHHHHHHHHHHHhcccCHHH
Confidence 79999999999999776 4455420 1111 222333332 22333333
Q ss_pred HHH-------HHHHHHHHHHHHHHHHHhHHHHHHHh-HhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003373 52 QIL-------KDQNDIIEEVVDEVVHAYHTGFNKAI-QNYSQILRLFSESAESIKELKVDLAEA 107 (825)
Q Consensus 52 ~~l-------~~~~~~~~~~L~~vV~~h~~~Fn~sI-~sy~~i~~~i~~Sq~~i~~lk~~L~~~ 107 (825)
-+. +.-+..+...++.++++|.++-.... ..+..+.-.+.+|++.|..+++++...
T Consensus 173 ~r~~p~~~~~~sPF~al~~e~~~~~~~~~~~~~~~~~~d~~~l~vll~qCr~~v~~v~~~~~~~ 236 (643)
T PF10136_consen 173 RRRMPELEERDSPFVALQREVEAFLEAYRQQDEDPDSEDLKHLRVLLDQCREQVDRVRKHLEKY 236 (643)
T ss_pred HhhCCCCcccCCCHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 322 22245557778888877776654321 177788888888888888888887766
No 35
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=52.76 E-value=2.9e+02 Score=28.74 Aligned_cols=96 Identities=14% Similarity=0.214 Sum_probs=74.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHH
Q 003373 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRS 125 (825)
Q Consensus 46 ~~e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s 125 (825)
+....+..|-+..+.+...+...++.....|...|.-|...+..+.+.=.+=..+-..+..+...|..++..+.++-..+
T Consensus 79 ~l~~~l~~l~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~ 158 (236)
T PF09325_consen 79 SLSEALSQLAEAFEKISELLEEQANQEEETLGEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASG 158 (236)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 35666777777788888888888888899999999999999999998888877888888899999999888888887763
Q ss_pred h-HHHHHHHHHHHHHHh
Q 003373 126 V-TLRHIISLLDQIEGI 141 (825)
Q Consensus 126 ~-~~~~~i~iL~~Ie~l 141 (825)
. ..+++-++..+|+++
T Consensus 159 ~~~~~k~~~~~~ei~~~ 175 (236)
T PF09325_consen 159 KNRQDKVEQAENEIEEA 175 (236)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 2 334444444444433
No 36
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=51.06 E-value=2e+02 Score=35.28 Aligned_cols=31 Identities=13% Similarity=0.179 Sum_probs=18.8
Q ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHhHhccC
Q 003373 182 LQDVRSELTKLRGVLFYKVLEDLHAHLYNRG 212 (825)
Q Consensus 182 L~~lr~~L~~~~~~L~d~LieEL~~~lYlKs 212 (825)
|..++.++......-...-+.+.-+.++-|.
T Consensus 492 l~~~~~~l~~~~~~~le~~~~~~f~~l~~k~ 522 (650)
T TIGR03185 492 LKEFREKLLERKLQQLEEEITKSFKKLMRKH 522 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4467777776655555555555556666664
No 37
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=50.24 E-value=3.5e+02 Score=28.95 Aligned_cols=122 Identities=11% Similarity=0.154 Sum_probs=91.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHH
Q 003373 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRS 125 (825)
Q Consensus 46 ~~e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s 125 (825)
.....+..|-+....+...++.....-.-.|--.|.-|-.++.+|..+=+.=..+-.....|...|..++..+.+|-..+
T Consensus 77 ~Ls~als~laev~~~i~~~~~~qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~ 156 (234)
T cd07665 77 ALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWAN 156 (234)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35667778888888888888888888888999999999999999999999999999999999999999999998883322
Q ss_pred hHHHHHHHHHHHHHHhhhcHHHHHHHHhccCHHHHHHHHHHHHHHhcc
Q 003373 126 VTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLER 173 (825)
Q Consensus 126 ~~~~~~i~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~ 173 (825)
.-.++-++-.+|.+.. .+++. .+++|-+.++++..=+...+.
T Consensus 157 -~~dK~~~a~~Ev~e~e---~k~~~--a~~~fe~is~~ik~El~rFe~ 198 (234)
T cd07665 157 -KPDKLQQAKDEIAEWE---SRVTQ--YERDFERISATVRKEVIRFEK 198 (234)
T ss_pred -CchHHHHHHHHHHHHH---HHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 2244444444444433 33332 344787777777776666655
No 38
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=48.98 E-value=3.4e+02 Score=29.14 Aligned_cols=83 Identities=20% Similarity=0.352 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 003373 48 EGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVT 127 (825)
Q Consensus 48 e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~ 127 (825)
..++..+....+.+...+++++.. +++............+...+.++..+|..+...+..+...+..+.++-..-..
T Consensus 26 ~~~l~~~~~~~~~l~~~i~~~l~~---~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 26 RSELQQLKEENEELRRRIEEILES---DSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555541 22226667778888888899999999999999999888888888887777666
Q ss_pred HHHHHH
Q 003373 128 LRHIIS 133 (825)
Q Consensus 128 ~~~~i~ 133 (825)
.+..+.
T Consensus 103 ~~~~l~ 108 (302)
T PF10186_consen 103 RRSRLS 108 (302)
T ss_pred HHHHHH
Confidence 666655
No 39
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.19 E-value=1.9e+02 Score=35.23 Aligned_cols=150 Identities=15% Similarity=0.184 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHH-------hHHHHH
Q 003373 59 DIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRS-------VTLRHI 131 (825)
Q Consensus 59 ~~~~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s-------~~~~~~ 131 (825)
+++...|+.+=-++-|..-.|=..-..+++.|..+-..|..+-+.|..|...|+.-|+++...-.+. ..-+.+
T Consensus 196 E~L~reLq~LdgANiqsilaSE~~Vn~ll~~ldaAl~~vd~~e~~Ld~yediL~hvre~iE~Ieekn~lie~~n~Nn~kL 275 (867)
T KOG2148|consen 196 ERLKRELQALDAANIQSILASEPLVNELLNGLDAALNEVDDMEEWLDSYEDILRHVREDIESIEEKNNLIEMQNVNNKKL 275 (867)
T ss_pred HHHHHHHHhhhcccHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhccchHHH
Confidence 4555666666666666666666777788888888888888998888888888888777775543332 222333
Q ss_pred HHHHH-HHHHhhhcHHHHHHHHhccCHHHH------HHHHHHHHHHhcccC----CCCcCCcHHHHHHHHHhHHHHHHHH
Q 003373 132 ISLLD-QIEGIAKVPARIEKLIAGKQYYAA------VQLHAQSALMLEREG----LQTVGALQDVRSELTKLRGVLFYKV 200 (825)
Q Consensus 132 i~iL~-~Ie~l~~vP~kie~lis~k~yl~A------~~lL~~s~~~l~~~~----L~~I~aL~~lr~~L~~~~~~L~d~L 200 (825)
++=|+ -|+.|. +|..--+-+.+..|..| ..-..+++.-+-.++ +....|.+|=|++|+..+.++-+.+
T Consensus 276 ~eEl~kvin~L~-vp~shi~aL~egdf~~a~~~ieact~aA~al~q~~~~~ldp~~l~m~Avkdqr~eleklk~~Fvrrl 354 (867)
T KOG2148|consen 276 IEELDKVINRLD-VPSSHIAALTEGDFDEADQGIEACTWAAKALRQLMNPNLDPIYLNMRAVKDQRAELEKLKATFVRRL 354 (867)
T ss_pred HHHHHHHHHhcc-CcHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 355565 88877777777777555 233344444444334 4556899999999999999998888
Q ss_pred HHHHHHhHh
Q 003373 201 LEDLHAHLY 209 (825)
Q Consensus 201 ieEL~~~lY 209 (825)
.+=|.+..-
T Consensus 355 ssfLnnlF~ 363 (867)
T KOG2148|consen 355 SSFLNNLFA 363 (867)
T ss_pred HHHHHHHHH
Confidence 777755443
No 40
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=46.79 E-value=3.8e+02 Score=28.45 Aligned_cols=152 Identities=16% Similarity=0.196 Sum_probs=102.7
Q ss_pred HHHHHHHhHhhcCCCCC-CchHHHHHhh--------ccCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhH-H
Q 003373 16 LREELARIEVSWVAPRF-DSLPHVVHIL--------TSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYS-Q 85 (825)
Q Consensus 16 l~~~l~~I~~ew~~~~f-~~~~~~l~~L--------~s~~~e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~-~ 85 (825)
+-+-++.|+-.++.+.. .|..+.=..| ..++....+..+-+....+..+-...+..=.+.|+..+.++- .
T Consensus 46 ~~~~~~k~rg~~k~~~~p~~~~~Lg~~M~~~G~~lg~dS~~G~aL~~~G~a~~kia~~~~~~d~~i~~~fl~pL~~~le~ 125 (223)
T cd07614 46 MLNTVSKIRGQVKNPGYPQSEGLLGETMIRYGKELGDESNFGDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLCDK 125 (223)
T ss_pred HHHHHHHHhccccCCCCCChHhHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777775432 2222222222 123457778888888888888888888888899999999996 8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHhH-----HHHHHHHHHH-HHHhhhcHHHHHHHHhccCHH
Q 003373 86 ILRLFSESAESIKELKVDLAEAKRRLGTRN-KQLHQLWYRSVT-----LRHIISLLDQ-IEGIAKVPARIEKLIAGKQYY 158 (825)
Q Consensus 86 i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~-~~L~~L~~~s~~-----~~~~i~iL~~-Ie~l~~vP~kie~lis~k~yl 158 (825)
-+..|+..|.++..-|=.+-.||+.+..+. ++|+.-..+-.+ ...|..+++. ++.++++-+-|++-+. -|-
T Consensus 126 dik~i~k~RKkLe~rRLdyD~~K~r~~k~~eeelr~a~ekFees~E~a~~~M~~il~~e~e~~~~L~~lveAQl~--Yh~ 203 (223)
T cd07614 126 DLKEIQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQAMEKFEESKEVAETSMHNLLETDIEQVSQLSALVDAQLD--YHR 203 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH--HHH
Confidence 888999999999999999999999997654 566655543332 4456666666 6666666666655553 334
Q ss_pred HHHHHHHHHHH
Q 003373 159 AAVQLHAQSAL 169 (825)
Q Consensus 159 ~A~~lL~~s~~ 169 (825)
.|.++|.+-..
T Consensus 204 qa~eiL~~l~~ 214 (223)
T cd07614 204 QAVQILDELAE 214 (223)
T ss_pred HHHHHHHHHHH
Confidence 44554444333
No 41
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=46.66 E-value=2.1e+02 Score=30.35 Aligned_cols=66 Identities=14% Similarity=0.190 Sum_probs=38.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003373 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNY-SQILRLFSESAESIKELKVDLAEAKRRL 111 (825)
Q Consensus 46 ~~e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy-~~i~~~i~~Sq~~i~~lk~~L~~~k~~L 111 (825)
+....+..+-+....|..+-......=.+.|+..+.++ ..=+..|+..|.++..-|=.+-.+|+.+
T Consensus 85 ~~G~aL~~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLdyD~~k~k~ 151 (223)
T cd07592 85 NFGQALVEVGEALKQLAEVKDSLDDNVKQNFLDPLQQLQDKDLKEINHHRKKLEGRRLDYDYKKRKQ 151 (223)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555556666666666666666555566666666665 3444556666666666666665555544
No 42
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=45.91 E-value=3.9e+02 Score=28.33 Aligned_cols=107 Identities=10% Similarity=0.147 Sum_probs=68.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHH
Q 003373 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQ-ILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYR 124 (825)
Q Consensus 46 ~~e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~~-i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~ 124 (825)
+....+...-+....+..+=...+..=.+.|...+.++-. -+..|+..+.++..-|=.+-.||..+..-.++|+.--..
T Consensus 90 ~~G~aL~~~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~~dlk~i~k~RKkLe~rRLd~D~~K~r~~kae~elr~A~~k 169 (220)
T cd07617 90 PYGKTLIKVGETQKRLGAAERDFIHTSSINFLTPLRNFLEGDWKTISKERRLLQNRRLDLDACKARLKKAEHELRVAQTE 169 (220)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4455666666666666666666666666889999988877 667888888888888888888888886654555544333
Q ss_pred HhHHHH-----HHHHHHH-HHHhhhcHHHHHHHH
Q 003373 125 SVTLRH-----IISLLDQ-IEGIAKVPARIEKLI 152 (825)
Q Consensus 125 s~~~~~-----~i~iL~~-Ie~l~~vP~kie~li 152 (825)
-.+..+ |..+|+. +|.|+++-+-|++-+
T Consensus 170 f~~~~E~a~~~M~~il~~~~e~l~~L~~lv~AQl 203 (220)
T cd07617 170 FDRQAEVTRLLLEGISSTHVNHLRCLHEFVEAQA 203 (220)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 333222 3334444 455555555444444
No 43
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=45.41 E-value=4.1e+02 Score=28.38 Aligned_cols=142 Identities=13% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hccCcHHHHHHHHHHhHH
Q 003373 62 EEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRR-------------LGTRNKQLHQLWYRSVTL 128 (825)
Q Consensus 62 ~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk~~L~~~k~~-------------L~~~~~~L~~L~~~s~~~ 128 (825)
...|..+.-+|-.+|..- ..|+..+..+++++++|..+|..+...-.. |..-....++|-.+...|
T Consensus 71 ~~~Lg~~M~~~g~~~g~~-S~~G~aL~~~g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le~dik~i~k~RKkLe~rRLdy 149 (229)
T cd07616 71 PELLGQYMIDAGNEFGPG-TAYGNALIKCGETQKQIGTADRELIQTSAINFLTPLRNFIEGDYKTITKERKLLQNKRLDL 149 (229)
T ss_pred HHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH--HHHhhhcHHHHHHHHhccCHHHHHHHHHHHHHHhcccCCCCcCCcHHHHHHHHHhHH--HHHHHHHHHH
Q 003373 129 RHIISLLDQ--IEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRG--VLFYKVLEDL 204 (825)
Q Consensus 129 ~~~i~iL~~--Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~aL~~lr~~L~~~~~--~L~d~LieEL 204 (825)
+..-.-+.. -++-+.++ .-|--.++-+|.++.+.-...+.-+.. .++.-++.|+.-+..|-. .-...++++|
T Consensus 150 D~~K~r~~kAk~~~~~~~~-e~elr~ae~efees~E~a~~~m~~i~~---~~~e~~~~L~~lv~AQl~Yh~~~~e~L~~L 225 (229)
T cd07616 150 DAAKTRLKKAKVAEARAAA-EQELRITQSEFDRQAEITRLLLEGISS---THAHHLRCLNDFVEAQMTYYAQCYQYMLDL 225 (229)
T ss_pred HHHHHHHhcCCcchhhcch-HHHHHHHHHHHHHHHHHHHHHHHhhhh---cChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhH
Q 003373 205 HAHL 208 (825)
Q Consensus 205 ~~~l 208 (825)
+..|
T Consensus 226 ~~~l 229 (229)
T cd07616 226 QKQL 229 (229)
T ss_pred HhhC
No 44
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=45.09 E-value=3.2e+02 Score=31.33 Aligned_cols=33 Identities=12% Similarity=0.117 Sum_probs=27.8
Q ss_pred HHHhhhcHHHHHHHHhccCHHHHHHHHHHHHHH
Q 003373 138 IEGIAKVPARIEKLIAGKQYYAAVQLHAQSALM 170 (825)
Q Consensus 138 Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~ 170 (825)
.+.+.++=..|+.++.+..+-.+..-+++++.-
T Consensus 336 ~~ni~~vs~dv~~ft~D~~~r~~Lr~li~~Ls~ 368 (370)
T PLN03094 336 LKHIESISSDISGFTGDEATRRNLKQLIQSLSR 368 (370)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc
Confidence 466677788999999999999999999988754
No 45
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=43.85 E-value=2.3e+02 Score=30.35 Aligned_cols=80 Identities=15% Similarity=0.216 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhHHHHHHHHHHH-H
Q 003373 60 IIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQ-I 138 (825)
Q Consensus 60 ~~~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~iL~~-I 138 (825)
..-..|+++||.++-+|...=.-|..-...|+.... .|-...+.+.+||.+-.+.+.+-..||+ +
T Consensus 71 l~~~~LeeliNkWs~el~~Qe~vF~~q~~qvNaWDr--------------~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L 136 (254)
T KOG2196|consen 71 LTYKTLEELINKWSLELEEQERVFLQQATQVNAWDR--------------TLIENGEKISGLYNEVVKVKLDQKRLDQEL 136 (254)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--------------HHHhCcHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345789999999999999999999887777766643 4455678899999999999999999987 8
Q ss_pred HHhhhcHHHHHHHHh
Q 003373 139 EGIAKVPARIEKLIA 153 (825)
Q Consensus 139 e~l~~vP~kie~lis 153 (825)
+.|.....+||.++.
T Consensus 137 ~~I~sqQ~ELE~~L~ 151 (254)
T KOG2196|consen 137 EFILSQQQELEDLLD 151 (254)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888888764
No 46
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=43.84 E-value=2.2e+02 Score=29.46 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=17.4
Q ss_pred CCCCCCCCCCCchHHHHHHHHHhH
Q 003373 1 MDIFDGLPISPEKAYLREELARIE 24 (825)
Q Consensus 1 ~~~~~~~p~~~~~~~l~~~l~~I~ 24 (825)
|.+|-+.||.||...|.+--..++
T Consensus 18 mevfk~vPQ~PHF~pL~~~~e~~R 41 (190)
T PF05266_consen 18 MEVFKKVPQSPHFSPLQEFKEELR 41 (190)
T ss_pred HHHHHcCCCCCCChhhhcCcHHhh
Confidence 456888999999999875444443
No 47
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=42.55 E-value=3.8e+02 Score=28.09 Aligned_cols=79 Identities=13% Similarity=0.156 Sum_probs=59.9
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhH---HHHHHHHHHHHHHhhhcHHHHHH
Q 003373 74 TGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVT---LRHIISLLDQIEGIAKVPARIEK 150 (825)
Q Consensus 74 ~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~---~~~~i~iL~~Ie~l~~vP~kie~ 150 (825)
+-+++-++.|-.+...+.+..-++...+..|...+..|+..+..+.+--..+.- +..+-...+.++.|+.+|+.+++
T Consensus 24 ~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~~a~~~mnel~~i~ri~~~~et 103 (204)
T COG5491 24 QVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSLDTMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFET 103 (204)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666777777777777799999999999999999977766554444443 55556678889999999999988
Q ss_pred HH
Q 003373 151 LI 152 (825)
Q Consensus 151 li 152 (825)
..
T Consensus 104 ~~ 105 (204)
T COG5491 104 QF 105 (204)
T ss_pred HH
Confidence 76
No 48
>PRK10869 recombination and repair protein; Provisional
Probab=41.27 E-value=7.2e+02 Score=30.00 Aligned_cols=24 Identities=8% Similarity=0.062 Sum_probs=10.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Q 003373 183 QDVRSELTKLRGVLFYKVLEDLHA 206 (825)
Q Consensus 183 ~~lr~~L~~~~~~L~d~LieEL~~ 206 (825)
..+...|...++.-...|-++++.
T Consensus 358 ~~~A~~LS~~R~~aA~~l~~~v~~ 381 (553)
T PRK10869 358 LETAQKLHQSRQRYAKELAQLITE 381 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445554444433334333333
No 49
>PRK14140 heat shock protein GrpE; Provisional
Probab=40.78 E-value=1.1e+02 Score=31.61 Aligned_cols=15 Identities=20% Similarity=0.330 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHhh
Q 003373 128 LRHIISLLDQIEGIA 142 (825)
Q Consensus 128 ~~~~i~iL~~Ie~l~ 142 (825)
.+.+|.++|.++...
T Consensus 90 ~~~LLpvlDnLerAl 104 (191)
T PRK14140 90 ASDLLPALDNFERAL 104 (191)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555555443
No 50
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=38.87 E-value=6.2e+02 Score=28.60 Aligned_cols=60 Identities=17% Similarity=0.195 Sum_probs=32.7
Q ss_pred HHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHH
Q 003373 64 VVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWY 123 (825)
Q Consensus 64 ~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~ 123 (825)
.+.+.+..+...|+..|.+-.++...+.+-.+.|..+=.+|...-..+..+.+++.++-.
T Consensus 166 ~~~~~~~g~~~~l~~~l~~l~~~~~~ln~~~~~i~~~i~~l~~~~~~~~~~~~~l~~~~~ 225 (359)
T COG1463 166 EAAAALAGTGPQLNALLDNLAQFTDALNARDGDIGALIANLNQLLDSLAAASDQLDRLLD 225 (359)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 333444445555555566666666666555555555555555555555555555544443
No 51
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=38.61 E-value=7.9e+02 Score=29.70 Aligned_cols=107 Identities=12% Similarity=0.176 Sum_probs=63.7
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhhcHHHHHHHHh
Q 003373 74 TGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIA 153 (825)
Q Consensus 74 ~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~iL~~Ie~l~~vP~kie~lis 153 (825)
+.++..-..|+.|...+.+..+++..+.+...+....|..-+++=++-...-..++..+.-+.--=+=..+|..=+.++.
T Consensus 365 ~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~ 444 (560)
T PF06160_consen 365 ERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLD 444 (560)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 45556666777777777777777777777777776666555544444444444444433333221112234444445554
Q ss_pred ccCHHHHHHHHHHHHHHhcccCCCCcCCcH
Q 003373 154 GKQYYAAVQLHAQSALMLEREGLQTVGALQ 183 (825)
Q Consensus 154 ~k~yl~A~~lL~~s~~~l~~~~L~~I~aL~ 183 (825)
.|..|.+-+.+-...|+..++ ++..++
T Consensus 445 --~~~~~~~~i~~l~~~L~~~pi-nm~~v~ 471 (560)
T PF06160_consen 445 --YFFDVSDEIEELSDELNQVPI-NMDEVN 471 (560)
T ss_pred --HHHHHHHHHHHHHHHHhcCCc-CHHHHH
Confidence 678888999988888988443 444333
No 52
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=38.55 E-value=5.1e+02 Score=27.50 Aligned_cols=56 Identities=20% Similarity=0.321 Sum_probs=30.9
Q ss_pred hHhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccCcHHHHHHHHHHhHHHHHHHHH
Q 003373 80 IQNYSQILRLFSESAESIK-------ELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLL 135 (825)
Q Consensus 80 I~sy~~i~~~i~~Sq~~i~-------~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~iL 135 (825)
|.+|..+-....+++++.. .+.+.|.+-...+..-++.|++|-.+.....+|++.|
T Consensus 127 v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l 189 (290)
T COG4026 127 VPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKL 189 (290)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5566666666555555544 3334444444444445556666666666666666555
No 53
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=38.33 E-value=4.4e+02 Score=26.65 Aligned_cols=22 Identities=18% Similarity=0.129 Sum_probs=8.5
Q ss_pred HHhccCcHHHHHHHHHHhHHHH
Q 003373 109 RRLGTRNKQLHQLWYRSVTLRH 130 (825)
Q Consensus 109 ~~L~~~~~~L~~L~~~s~~~~~ 130 (825)
..+...+..+.+++.+.....+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~ 179 (191)
T PF04156_consen 158 EEVQELRSQLERLQENLQQLEE 179 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444333333333
No 54
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=38.15 E-value=2.7e+02 Score=27.19 Aligned_cols=73 Identities=18% Similarity=0.189 Sum_probs=52.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHh----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHH
Q 003373 46 DREGEVQILKDQNDIIEEVVDEVVHAYHT---GFNKAI----QNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQL 118 (825)
Q Consensus 46 ~~e~~~~~l~~~~~~~~~~L~~vV~~h~~---~Fn~sI----~sy~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L 118 (825)
+.+.++..++++..+.+..+++.-..|.. .....| ..|.+.+..++.....|..-++++...|..|..-+..|
T Consensus 23 pv~~al~~ld~ss~g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L 102 (142)
T PF04048_consen 23 PVELALSLLDDSSVGRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQEAKSLL 102 (142)
T ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77999999999887777777766655522 222223 45667777888888888888888888888887777666
No 55
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=37.26 E-value=5.7e+02 Score=27.66 Aligned_cols=55 Identities=18% Similarity=0.355 Sum_probs=43.0
Q ss_pred HHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH
Q 003373 68 VVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLW 122 (825)
Q Consensus 68 vV~~h~~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~ 122 (825)
.++.....+...|.+...+.+.+.+.++.+..+-.++...-..|..++++|.++-
T Consensus 182 ~l~~~~~~i~~ll~~l~~l~~~l~~~~~~l~~~v~~l~~~~~~l~~~~~~l~~~l 236 (291)
T TIGR00996 182 ALNARDGDIGALIDNLNRVLDVLADRSDQLDRLLDNLATLTAQLADRDDALDDAL 236 (291)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 4456677888888888888888888888888888888887777777777766553
No 56
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=37.25 E-value=4.1e+02 Score=30.81 Aligned_cols=60 Identities=12% Similarity=0.194 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhh--HHHHHHHHHHHHHHHHHHHHHHHH
Q 003373 48 EGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNY--SQILRLFSESAESIKELKVDLAEA 107 (825)
Q Consensus 48 e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy--~~i~~~i~~Sq~~i~~lk~~L~~~ 107 (825)
.....+|++....+...++..+..+.+.+..--..+ ..-...+...++++..++.+|..+
T Consensus 263 ~e~~q~Ld~l~~rL~~a~~~~L~~~~~~L~~L~~rL~~~~P~~~l~~~~q~L~~l~~rL~~a 324 (438)
T PRK00286 263 AELLQRLQQLQQRLARAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQRLQRA 324 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777777778888888887777777655554 223445556666666666666554
No 57
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=37.16 E-value=7.7e+02 Score=31.32 Aligned_cols=92 Identities=18% Similarity=0.328 Sum_probs=69.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHH
Q 003373 45 KDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYR 124 (825)
Q Consensus 45 ~~~e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~ 124 (825)
+++.+.++++-+..+.....+++--.+| ++||..+........+...++++|..-+..+...++ ...||-.
T Consensus 177 ~GrnP~iNq~l~klkq~~~ei~e~eke~--------a~yh~lLe~r~~~~~rl~~l~~elr~~~~~i~~~~~-~v~l~~~ 247 (984)
T COG4717 177 SGRNPQINQLLEKLKQERNEIDEAEKEY--------ATYHKLLESRRAEHARLAELRSELRADRDHIRALRD-AVELWPR 247 (984)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHH
Confidence 3667777776666666666666555444 789999999999999999999999999888887665 5689999
Q ss_pred HhHHHHHHHHHHH-HHHhhhcH
Q 003373 125 SVTLRHIISLLDQ-IEGIAKVP 145 (825)
Q Consensus 125 s~~~~~~i~iL~~-Ie~l~~vP 145 (825)
.++.+.+-+-|+- -++.-..|
T Consensus 248 lqE~k~Leqel~~~~~e~~~fP 269 (984)
T COG4717 248 LQEWKQLEQELTRRREELATFP 269 (984)
T ss_pred HHHHHHHHHHhccchhhhccCC
Confidence 9999977777764 23334444
No 58
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=36.85 E-value=5.6e+02 Score=27.52 Aligned_cols=142 Identities=17% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHH----hHhhHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhc----cCcHHHHHHHH
Q 003373 61 IEEVVDEVVHAYHTGFNKA----IQNYSQILRLFSESAESIKE---------LKVDLAEAKRRLG----TRNKQLHQLWY 123 (825)
Q Consensus 61 ~~~~L~~vV~~h~~~Fn~s----I~sy~~i~~~i~~Sq~~i~~---------lk~~L~~~k~~L~----~~~~~L~~L~~ 123 (825)
+..+|..+..+|-..|... -..|+..+..+++++++|.+ .++-+.--+..|. .=...-++|-.
T Consensus 79 l~~aLs~~m~~~~~~l~~~~~~~~s~lg~aL~~~g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~~d~k~i~k~RKkle~ 158 (242)
T cd07600 79 LNHALSRAALASSLELKSLEPEDEDPLSKALGKYSDAEEKIAEARLEQDQLIQKEFNAKLRETLNTSFQKAHKARKKVED 158 (242)
T ss_pred HHHHHHHHHHHHHHHhCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHHHH---HHhhhcHHHHHHHHhccCHHHHHHHHHHHHHHhcccCCCCcCCcHHHHHHHHHhHH--HHHH
Q 003373 124 RSVTLRHIISLLDQI---EGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRG--VLFY 198 (825)
Q Consensus 124 ~s~~~~~~i~iL~~I---e~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~aL~~lr~~L~~~~~--~L~d 198 (825)
++..|+.+-.-+... +.--...+.+| -++.+|..|++.-...+.-+ +.+..-++.|+.-+..|-. .-.-
T Consensus 159 ~RLd~D~~K~~~~ka~~~~k~~~~~~e~E--~aEdef~~a~E~a~~~M~~i----l~~~e~i~~L~~fv~AQl~Yh~~~~ 232 (242)
T cd07600 159 KRLQLDTARAELKSAEPAEKQEAARVEVE--TAEDEFVSATEEAVELMKEV----LDNPEPLQLLKELVKAQLAYHKTAA 232 (242)
T ss_pred HHHHHHHHHHHHHhccccccccchHHHHH--HHHHHHHHhHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhH
Q 003373 199 KVLEDLHAHL 208 (825)
Q Consensus 199 ~LieEL~~~l 208 (825)
.++++|...+
T Consensus 233 e~L~~l~~~~ 242 (242)
T cd07600 233 ELLEELLSVL 242 (242)
T ss_pred HHHHHHhhcC
No 59
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=36.46 E-value=5.1e+02 Score=26.87 Aligned_cols=43 Identities=14% Similarity=0.265 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHH
Q 003373 53 ILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAES 96 (825)
Q Consensus 53 ~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq~~ 96 (825)
.|+.....+.+.+..+| .|.++...+++.|+.....++.+...
T Consensus 35 ~le~~Lk~l~~~~~~l~-~~~~~l~~~~~e~~~~~~~la~~E~~ 77 (236)
T PF09325_consen 35 KLEEQLKKLYKSLERLV-KRRQELASALAEFGSSFSQLAKSEEE 77 (236)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 33444444444444444 44678888888888888887777655
No 60
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.16 E-value=1.6e+02 Score=36.94 Aligned_cols=170 Identities=14% Similarity=0.195 Sum_probs=93.5
Q ss_pred cCCCCCCchHHHHHhhcc---CchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHH-HHHH
Q 003373 27 WVAPRFDSLPHVVHILTS---KDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIK-ELKV 102 (825)
Q Consensus 27 w~~~~f~~~~~~l~~L~s---~~~e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq~~i~-~lk~ 102 (825)
...+.|+|-...++.=.. ++.+....-++...+.=...=..+|..++..|-.+..+-..|-+.+..--++.+ .+=.
T Consensus 166 l~se~Fspkw~L~enH~~ts~edLk~~i~~lK~~~n~~~~~~~~lvK~n~~~fi~~~dtl~~i~~kLe~~e~~~~gs~t~ 245 (934)
T KOG2347|consen 166 LRSEHFSPKWFLLENHQDTSFEDLKAGILNLKRDLNGRKEGSLQLVKDNFDSFISCKDTLDNIHQKLERGEEDPHGSGTT 245 (934)
T ss_pred cccccCChhHHHHhhhhhccHHHHHHHHHHHHHhhcchhhhhHHHHhcchhHHHHHHHHHHHHHHHHhccccCccchHHH
Confidence 345789998888877322 233333333332222222222345666666665555555555444444111111 1112
Q ss_pred HHHHHHHHhccCcHHH-HHHHHHHhH---HHHHHHHHHHHHHhhhcHHHHHHHHhccCHHHHHHHHHHHHHHhcccCCCC
Q 003373 103 DLAEAKRRLGTRNKQL-HQLWYRSVT---LRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQT 178 (825)
Q Consensus 103 ~L~~~k~~L~~~~~~L-~~L~~~s~~---~~~~i~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~ 178 (825)
+|..|-+....+.+-+ ..+..|.-+ -+-++-+|.-...|-..|..|+.-|.++.|.-++.=..++..+.-+
T Consensus 246 ~l~n~i~~~~s~ad~iF~~vl~Rk~~ADstRsvL~~lqRfkfLFnLp~~ier~i~kGeYd~vvndYekAKsl~~~----- 320 (934)
T KOG2347|consen 246 KLENCIKNSTSRADLIFEDVLERKDKADSTRSVLGVLQRFKFLFNLPSNIERSIKKGEYDTVVNDYEKAKSLFGK----- 320 (934)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcchhhhhHhhcCCceeeccchhhHHHhhcc-----
Confidence 2555655555444332 333333332 2356667777777888999999999999999888888877766655
Q ss_pred cCCcHHHHHHHH-------HhHHHHHHHHHH
Q 003373 179 VGALQDVRSELT-------KLRGVLFYKVLE 202 (825)
Q Consensus 179 I~aL~~lr~~L~-------~~~~~L~d~Lie 202 (825)
.-+.-+|.+|+ ..+..|++.|++
T Consensus 321 -t~v~~Fkk~l~Eve~~m~~~k~~l~~kli~ 350 (934)
T KOG2347|consen 321 -TEVNLFKKVLEEVEKRMQSFKETLYRKLID 350 (934)
T ss_pred -cccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 23344444444 344555555543
No 61
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=35.43 E-value=3.6e+02 Score=25.24 Aligned_cols=78 Identities=14% Similarity=0.187 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHHHHHHHHH---HHHHHHHHHhccCcHHHHHHHHHHhHHHHHHHHH-----H-----HHHHhhhcHHHH
Q 003373 82 NYSQILRLFSESAESIKELK---VDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLL-----D-----QIEGIAKVPARI 148 (825)
Q Consensus 82 sy~~i~~~i~~Sq~~i~~lk---~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~iL-----~-----~Ie~l~~vP~ki 148 (825)
.|+++.....++|.++..+- ..+.-+++..+-...++..+-.+..-|.-|-... . .-+++++..++|
T Consensus 4 af~~lQ~K~~dtqq~~~~~~vQi~~~nr~kk~~~l~~ke~~~~~de~~~Y~svgrmF~l~dk~a~~s~leak~k~see~I 83 (114)
T KOG3501|consen 4 AFSQLQEKAVDTQQQLRTIMVQIAAKNRAKKISELAKKELEDVGDEKAVYTSVGRMFMLSDKAAVRSHLEAKMKSSEEKI 83 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHHH
Confidence 46777777888888887655 4455566666666677766666666666554432 2 235677888888
Q ss_pred HHHHhccCHHH
Q 003373 149 EKLIAGKQYYA 159 (825)
Q Consensus 149 e~lis~k~yl~ 159 (825)
+++=.+|.|++
T Consensus 84 eaLqkkK~YlE 94 (114)
T KOG3501|consen 84 EALQKKKTYLE 94 (114)
T ss_pred HHHHHHHHHHH
Confidence 88888888865
No 62
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=35.17 E-value=8.8e+02 Score=29.29 Aligned_cols=107 Identities=12% Similarity=0.122 Sum_probs=63.9
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhhcHHHHHHHHh
Q 003373 74 TGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIA 153 (825)
Q Consensus 74 ~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~iL~~Ie~l~~vP~kie~lis 153 (825)
+.++.....|+.+...+.+..+++..+++.-.+-+..|..-+.+-.+.-..-..++..+.-+...=+-..+|.--+.++.
T Consensus 369 ~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~ 448 (569)
T PRK04778 369 ERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLE 448 (569)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHH
Confidence 55666666677777777777777777777777777766665555555544444555544444333333344544444443
Q ss_pred ccCHHHHHHHHHHHHHHhcccCCCCcCCcH
Q 003373 154 GKQYYAAVQLHAQSALMLEREGLQTVGALQ 183 (825)
Q Consensus 154 ~k~yl~A~~lL~~s~~~l~~~~L~~I~aL~ 183 (825)
.|-.+.+-+.+-...++. .=.++.|+.
T Consensus 449 --~~~~~~~~i~~l~~~L~~-g~VNm~ai~ 475 (569)
T PRK04778 449 --MFFEVSDEIEALAEELEE-KPINMEAVN 475 (569)
T ss_pred --HHHHHHHHHHHHHHHhcc-CCCCHHHHH
Confidence 344666666666666766 566666666
No 63
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=33.55 E-value=8.1e+02 Score=28.36 Aligned_cols=52 Identities=12% Similarity=0.199 Sum_probs=29.8
Q ss_pred HHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHH
Q 003373 70 HAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQL 121 (825)
Q Consensus 70 ~~h~~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L 121 (825)
..-|.+....+..|..+...+..-...+..+...+..++..+...-+++.+|
T Consensus 286 ~~~~~~~~~~~~~l~~~~~~l~~yl~~~~~~~~~~~~~~~~i~~~~~~l~~L 337 (412)
T PF04108_consen 286 RELYNALSEALEELRKFGERLPSYLAAFHDFEERWEEEKESIQAYIDELEQL 337 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666555566666666666666666554444444444
No 64
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=33.52 E-value=5.1e+02 Score=26.03 Aligned_cols=98 Identities=17% Similarity=0.209 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------CcHHHHHHHHHHhHHHHHHHH
Q 003373 62 EEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGT-------RNKQLHQLWYRSVTLRHIISL 134 (825)
Q Consensus 62 ~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~-------~~~~L~~L~~~s~~~~~~i~i 134 (825)
...|.+-+.+--..+.+-=..++..+..++.-+++...+...+...+..|.. -+++|.++-.+...+.....-
T Consensus 51 n~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~ 130 (177)
T PF13870_consen 51 NQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKK 130 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555666666666666666666555555555555544 445555555555555555555
Q ss_pred HHHHHHhhhcHHHHHHHHhccCHHH
Q 003373 135 LDQIEGIAKVPARIEKLIAGKQYYA 159 (825)
Q Consensus 135 L~~Ie~l~~vP~kie~lis~k~yl~ 159 (825)
|..=-.+-.+|+-+..|+..+....
T Consensus 131 l~~~~~~~~~P~ll~Dy~~~~~~~~ 155 (177)
T PF13870_consen 131 LRQQGGLLGVPALLRDYDKTKEEVE 155 (177)
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHHH
Confidence 6555666688999888887766544
No 65
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=33.10 E-value=9.5e+02 Score=29.02 Aligned_cols=86 Identities=20% Similarity=0.253 Sum_probs=53.9
Q ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhHHHHHHHHH-HHHHHhhhcHHHHHHHHhcc
Q 003373 77 NKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLL-DQIEGIAKVPARIEKLIAGK 155 (825)
Q Consensus 77 n~sI~sy~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~iL-~~Ie~l~~vP~kie~lis~k 155 (825)
..-......++..=...+..|..+|+...++|+.|..++... ...+..| ++++.+-.--++.+.++.++
T Consensus 118 ~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~----------G~a~~~Le~~L~~ie~~F~~f~~lt~~G 187 (560)
T PF06160_consen 118 KEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSY----------GPAIEELEKQLENIEEEFSEFEELTENG 187 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----------chhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 333334445555555666666666666666666555554433 3333333 33556666678999999999
Q ss_pred CHHHHHHHHHHHHHHhc
Q 003373 156 QYYAAVQLHAQSALMLE 172 (825)
Q Consensus 156 ~yl~A~~lL~~s~~~l~ 172 (825)
+|.+|.++|...-.-+.
T Consensus 188 D~~~A~eil~~l~~~~~ 204 (560)
T PF06160_consen 188 DYLEAREILEKLKEETD 204 (560)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999886655443
No 66
>KOG2216 consensus Conserved coiled/coiled coil protein [Function unknown]
Probab=32.43 E-value=4.5e+02 Score=28.88 Aligned_cols=137 Identities=22% Similarity=0.256 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH--HHHhHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 003373 53 ILKDQNDIIEEVVDEVVHAYHTGF--NKAIQNYSQ---ILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVT 127 (825)
Q Consensus 53 ~l~~~~~~~~~~L~~vV~~h~~~F--n~sI~sy~~---i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~ 127 (825)
-++.+++.+.+++.++-+...++- -..++++.. ....-..+..+...+|...+.++..+...+=+|+.|-.+-+.
T Consensus 15 il~t~f~qlqk~ia~ikeak~rg~~~e~~~q~~~~fv~Lr~aNR~~~~q~~~~r~~t~e~k~~vD~~~LQLqnl~yev~H 94 (303)
T KOG2216|consen 15 ILNTQFDQLQKAIAGIKEAKSRGPIEENRIQTMSKFVLLRHANRLLHAQLKKARKETEEAKNKVDAKHLQLQNLLYEVQH 94 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCHhhhhHHHHHHHHHH
Confidence 445556666666666655555544 333444444 444445566778899999999999999999999999999888
Q ss_pred HHHHHH-------------HHHHHHHhhhcHHHHHH--HHhccCHHHHHHHHHHHHHHhcccCCCCcCCcHHHHHHHHHh
Q 003373 128 LRHIIS-------------LLDQIEGIAKVPARIEK--LIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKL 192 (825)
Q Consensus 128 ~~~~i~-------------iL~~Ie~l~~vP~kie~--lis~k~yl~A~~lL~~s~~~l~~~~L~~I~aL~~lr~~L~~~ 192 (825)
++..|. +...+|-.+..|+-+.. .-++..+ ..-+..++- +|..=..|..++++|..+
T Consensus 95 lkkeI~~c~~fks~~~el~Lvs~eEf~kEaP~i~a~ae~sssn~H-------~q~larL~~-ElkQRk~L~~~~~eLl~~ 166 (303)
T KOG2216|consen 95 LKKEIKRCLDFKSKYTELELVSEEEFNKEAPEIIADAEESSSNPH-------KQMLARLDF-ELKQRKELSKLYQELLSR 166 (303)
T ss_pred HHHHHHHHHHhhccCcccccccHHHHhhhCCcchhhhHhhcCCcH-------HHHHHHhHH-HHHHHHHHHHHHHHHHHH
Confidence 777654 45556777777766654 4444444 233334443 666667888899999999
Q ss_pred HHHHH
Q 003373 193 RGVLF 197 (825)
Q Consensus 193 ~~~L~ 197 (825)
+..|.
T Consensus 167 K~~Ll 171 (303)
T KOG2216|consen 167 KAALL 171 (303)
T ss_pred HHHHH
Confidence 88873
No 67
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=31.86 E-value=2.8e+02 Score=31.23 Aligned_cols=94 Identities=18% Similarity=0.238 Sum_probs=0.0
Q ss_pred HhHhhcCCCCCCchHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 003373 22 RIEVSWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELK 101 (825)
Q Consensus 22 ~I~~ew~~~~f~~~~~~l~~L~s~~~e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk 101 (825)
.|..||. +.+.+.++|++++......+.++-.-- ......|+..+.+++.++
T Consensus 1 e~~eEW~-----------------eL~~efq~Lqethr~Y~qKleel~~lQ-----------~~C~ssI~~QkkrLk~L~ 52 (330)
T PF07851_consen 1 ECEEEWE-----------------ELQKEFQELQETHRSYKQKLEELSKLQ-----------DKCSSSISHQKKRLKELK 52 (330)
T ss_pred ChHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhhcHHH
Q 003373 102 VDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPAR 147 (825)
Q Consensus 102 ~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~iL~~Ie~l~~vP~k 147 (825)
.+|+.|+.. ...++-..+-.=..+-++.-..+.+|| .-.|.+
T Consensus 53 ~sLk~~~~~--~~~e~~~~i~~L~~~Ik~r~~~l~DmE--a~LPkk 94 (330)
T PF07851_consen 53 KSLKRCKKS--LSAEERELIEKLEEDIKERRCQLFDME--AFLPKK 94 (330)
T ss_pred HHHHHhccC--CChhHHHHHHHHHHHHHHHHhhHHHHH--hhCCCC
No 68
>KOG3745 consensus Exocyst subunit - Sec10p [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.67 E-value=8.6e+02 Score=30.41 Aligned_cols=163 Identities=10% Similarity=0.080 Sum_probs=104.1
Q ss_pred CCCCchHHHHHhhcc--------CchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 003373 30 PRFDSLPHVVHILTS--------KDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELK 101 (825)
Q Consensus 30 ~~f~~~~~~l~~L~s--------~~~e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk 101 (825)
.+|+|....-..... +.-+...+.++++....+..=..-|+..+..+..++-.|......+..-...+-.++
T Consensus 47 ~~~~~~~l~~~f~~~~~eL~~L~e~~qnk~~~~e~~~~~~q~s~~kkv~~lr~k~~~a~~l~~~ld~~~~~v~~~vv~lg 126 (763)
T KOG3745|consen 47 KDLDPKGLIKTFENEIKELTLLDERYQNKIRMLEEQMSTEQNSYKKKVDKLREKNSTALLLFLQLDDNIFPVSYKVVHLG 126 (763)
T ss_pred hhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhccccccccccccHH
Confidence 467776655444211 122344445555555555555566777778888888889888888888888888899
Q ss_pred HHHHHHHHHhcc--CcHHHHHHHHHHhHHHHHHHHHHHHHHhhhcHHHHHHHHhccCHHHHHHHHHHHHHHhcccCCCCc
Q 003373 102 VDLAEAKRRLGT--RNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTV 179 (825)
Q Consensus 102 ~~L~~~k~~L~~--~~~~L~~L~~~s~~~~~~i~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I 179 (825)
+.|+.+...-.. .+.+|-+-|.+-..-++ .. .++.++..+ -+.-++|++++..=+.+.+..+..
T Consensus 127 q~Le~v~~~r~r~~~a~~lir~~~eF~s~~~-~~---i~s~i~~~~--------~~k~leaa~~~~kLl~isnel~~~-- 192 (763)
T KOG3745|consen 127 QQLETVIKPRSRAVDAQELIRYYNEFLSGGR-QY---INSDIFTSA--------FDKNLEAADRIKKLLLISNELPYG-- 192 (763)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhccCc-hh---HHHHHhcCh--------hhhHHHHHHHHHHHHHHhccCCcc--
Confidence 888887654311 12233333332221111 11 111122211 256789999999988888876655
Q ss_pred CCcHHHHHHHHHhHHHHHHHHHHHHHHh
Q 003373 180 GALQDVRSELTKLRGVLFYKVLEDLHAH 207 (825)
Q Consensus 180 ~aL~~lr~~L~~~~~~L~d~LieEL~~~ 207 (825)
-....+..++...+.|-..++||..+.
T Consensus 193 -~f~~tka~I~k~~~~lE~~lleeF~~~ 219 (763)
T KOG3745|consen 193 -KFSETKARIEKKYEVLEQNLLEEFNSA 219 (763)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788889999999999999999999553
No 69
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=31.64 E-value=9e+02 Score=29.20 Aligned_cols=79 Identities=18% Similarity=0.210 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhHHHHHHHHHH-HHHHhhhcHHHHHHHHhccCHHHHH
Q 003373 83 YSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLD-QIEGIAKVPARIEKLIAGKQYYAAV 161 (825)
Q Consensus 83 y~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~iL~-~Ie~l~~vP~kie~lis~k~yl~A~ 161 (825)
...++..=.+.+..|..+|..-.+.|+.|..++.. |...+..|+ +++.+-.--++.+.+..+++|.+|.
T Consensus 128 l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~----------~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~ 197 (569)
T PRK04778 128 LQELLESEEKNREEVEQLKDLYRELRKSLLANRFS----------FGPALDELEKQLENLEEEFSQFVELTESGDYVEAR 197 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc----------ccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 34444444555555556666665555555554443 333333333 3556666678899999999999999
Q ss_pred HHHHHHHHHh
Q 003373 162 QLHAQSALML 171 (825)
Q Consensus 162 ~lL~~s~~~l 171 (825)
+.|.+.-.-+
T Consensus 198 e~l~~l~~~~ 207 (569)
T PRK04778 198 EILDQLEEEL 207 (569)
T ss_pred HHHHHHHHHH
Confidence 9887655444
No 70
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.50 E-value=9.8e+02 Score=28.71 Aligned_cols=120 Identities=17% Similarity=0.254 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh----HHHH-HHH---hH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--
Q 003373 48 EGEVQILKDQNDIIEEVVDEVVHAY----HTGF-NKA---IQ---NYSQILRLFSESAESIKELKVDLAEAKRRLGTR-- 114 (825)
Q Consensus 48 e~~~~~l~~~~~~~~~~L~~vV~~h----~~~F-n~s---I~---sy~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~-- 114 (825)
+..+..|+.....++.+++.|-++- .+.| ..+ |. .|-.++.+|+--..-+..+.+....-......|
T Consensus 300 ~~K~~llEkala~~edaI~~v~D~~~~d~~~~~~t~~~q~i~aYL~Y~~l~~tisR~~~~~~n~~~~~ls~~~~~~~k~r 379 (593)
T KOG2460|consen 300 DQKLSLLEKALARCEDAIQNVRDEIKIDEKQRNSTLNGQIILAYLKYNKLLTTISRNEDAFTNLWNQWLSQQTSDPKKLR 379 (593)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcccchHhhhhhhcchHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHhCcccccccC
Confidence 5556778888777777777765431 1221 111 22 245555555544444444444443333222222
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHh------hhcHHH----------------HHHHHhccCHHHHHHHHHHHHHHhc
Q 003373 115 NKQLHQLWYRSVTLRHIISLLDQIEGI------AKVPAR----------------IEKLIAGKQYYAAVQLHAQSALMLE 172 (825)
Q Consensus 115 ~~~L~~L~~~s~~~~~~i~iL~~Ie~l------~~vP~k----------------ie~lis~k~yl~A~~lL~~s~~~l~ 172 (825)
-.+|.+|+ +-+|+.|..|-+| +....+ -..|.+.++|-+|+-|.++++.-++
T Consensus 380 pqdl~RLY------d~iiknl~e~~elPG~~~D~~l~sqle~~~~~fkafRC~~iA~sY~a~~K~~EAlALy~Ra~sylq 453 (593)
T KOG2460|consen 380 PQDLERLY------DSIIKNLSEIMELPGLESDKELQSQLELKKLYFKAFRCFYIAVSYQAKKKYSEALALYVRAYSYLQ 453 (593)
T ss_pred HHHHHHHH------HHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445544 3444444333322 111122 3467889999999999999999886
Q ss_pred c
Q 003373 173 R 173 (825)
Q Consensus 173 ~ 173 (825)
.
T Consensus 454 e 454 (593)
T KOG2460|consen 454 E 454 (593)
T ss_pred H
Confidence 5
No 71
>PHA02562 46 endonuclease subunit; Provisional
Probab=30.64 E-value=4.8e+02 Score=31.00 Aligned_cols=9 Identities=33% Similarity=0.261 Sum_probs=3.3
Q ss_pred HHHHHHHHh
Q 003373 184 DVRSELTKL 192 (825)
Q Consensus 184 ~lr~~L~~~ 192 (825)
+.+.+|+.+
T Consensus 306 d~i~~l~~~ 314 (562)
T PHA02562 306 DKLKELQHS 314 (562)
T ss_pred HHHHHHHHH
Confidence 333333333
No 72
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=30.34 E-value=6.6e+02 Score=26.37 Aligned_cols=150 Identities=13% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHH--HhHH
Q 003373 51 VQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYR--SVTL 128 (825)
Q Consensus 51 ~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~--s~~~ 128 (825)
+..|+...+.+-+.++.+|..| .+...+++.|+..+..++.+-. ...|..+=..++.--..+.++..+ ....
T Consensus 21 i~~Le~~Lk~l~~~~e~lv~~r-~ela~~~~~f~~s~~~L~~~E~-----~~~Ls~al~~la~~~~ki~~~~~~qa~~d~ 94 (224)
T cd07623 21 IENLDQQLRKLHASVESLVNHR-KELALNTGSFAKSAAMLSNCEE-----HTSLSRALSQLAEVEEKIEQLHGEQADTDF 94 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccc-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH-HHHhhhcHHHHHHHHhcc-CHHHHHHHHHHHHHHhcccCCCC-----------cCCcHHHHHHHHHhHHH
Q 003373 129 RHIISLLDQ-IEGIAKVPARIEKLIAGK-QYYAAVQLHAQSALMLEREGLQT-----------VGALQDVRSELTKLRGV 195 (825)
Q Consensus 129 ~~~i~iL~~-Ie~l~~vP~kie~lis~k-~yl~A~~lL~~s~~~l~~~~L~~-----------I~aL~~lr~~L~~~~~~ 195 (825)
..+.+.|+. +.-+.+||+-+.....-- +|..|..-|...-..+++....+ |.....--......-..
T Consensus 95 ~~l~e~L~eY~r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~e~~~~~a~~~fe~ 174 (224)
T cd07623 95 YILAELLKDYIGLIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKEWEAKVDRGQKEFEE 174 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 003373 196 LFYKVLEDLHA 206 (825)
Q Consensus 196 L~d~LieEL~~ 206 (825)
+-+.+-.||.+
T Consensus 175 is~~~k~El~r 185 (224)
T cd07623 175 ISKTIKKEIER 185 (224)
T ss_pred HHHHHHHHHHH
No 73
>PHA02503 putative transcription regulator; Provisional
Probab=30.09 E-value=50 Score=26.36 Aligned_cols=19 Identities=21% Similarity=0.740 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhhhhhHHH
Q 003373 622 LLAFVENFVKDHLLPTMFV 640 (825)
Q Consensus 622 l~~Fl~~Fv~~~FLp~l~~ 640 (825)
|..|-.+|+++..|||+.+
T Consensus 26 l~~~s~~fl~~slipql~e 44 (57)
T PHA02503 26 LSVYSKDFLQNSLIPQLYE 44 (57)
T ss_pred HHHHHHHHHHhhhhHHHHH
Confidence 6678889999999999985
No 74
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=29.01 E-value=6.6e+02 Score=25.90 Aligned_cols=72 Identities=4% Similarity=0.080 Sum_probs=52.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHH
Q 003373 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQ 117 (825)
Q Consensus 46 ~~e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~ 117 (825)
+++..+..+-...+.+...++.+.+.+...|.-.|.-|......|...-..=.+.......+..-|..++.+
T Consensus 67 ~L~~~L~~~~~~~~~~~~~~~~l~~~~~~~f~e~Lkey~~y~~svk~~l~~R~~~q~~~e~~~e~L~~k~~~ 138 (200)
T cd07624 67 ELAPLLEGVSSAVERCTAALEVLLSDHEFVFLPPLREYLLYSDAVKDVLKRRDQFQIEYELSVEELNKKRLE 138 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777778888888888888888888888888888888776665555666666666666555544
No 75
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=28.79 E-value=7.3e+02 Score=26.33 Aligned_cols=60 Identities=13% Similarity=0.194 Sum_probs=35.6
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHhcccCCCCcCCcHHH---HHHHHHhHHHHHHHHHHHHHHh
Q 003373 148 IEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDV---RSELTKLRGVLFYKVLEDLHAH 207 (825)
Q Consensus 148 ie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~aL~~l---r~~L~~~~~~L~d~LieEL~~~ 207 (825)
-|--.++.+|.++.+.....+.-+-..+-..|..|..+ ......+-..+...|..+|+..
T Consensus 157 eEl~~Ae~kfe~s~E~a~~~M~~il~~e~e~~~~L~~lveAQl~Yh~~~~e~L~~l~~~L~~~ 219 (223)
T cd07592 157 EELKQAEEKFEESKELAENSMFNLLENDVEQVSQLSALVEAQLDYHRQSAEILEELQSKLQER 219 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445777888888887777766644356666666555 3333444444555556666543
No 76
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=28.41 E-value=4.4e+02 Score=28.92 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhHHHH
Q 003373 86 ILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRH 130 (825)
Q Consensus 86 i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~ 130 (825)
..-.+.++|..|+++|+-+.+.|..|..+.+.+++.+.+--.+.+
T Consensus 115 AQLALKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~ 159 (305)
T PF15290_consen 115 AQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNK 159 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHh
Confidence 355789999999999999999999999998888887766444433
No 77
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=27.54 E-value=9.9e+02 Score=31.56 Aligned_cols=69 Identities=16% Similarity=0.132 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhhcHHHHHHHHhc
Q 003373 84 SQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAG 154 (825)
Q Consensus 84 ~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~iL~~Ie~l~~vP~kie~lis~ 154 (825)
.+....+..+-+++..+++.|.++...+....++.++|-.-+..+..+|+.+.. +.+.+-++++.+...
T Consensus 528 q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e--~~~~~~d~l~~le~~ 596 (1317)
T KOG0612|consen 528 QKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELE--ENRDLEDKLSLLEES 596 (1317)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhh--ccccHHHHHHHHHHH
Confidence 556667778888888999999999999888888888998888888888776654 444555555544443
No 78
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=27.29 E-value=1.1e+03 Score=31.53 Aligned_cols=79 Identities=18% Similarity=0.327 Sum_probs=44.9
Q ss_pred HhhccCch-hHHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHhHh-------hHHHHHHHHHHHHHHHHHHHHHH
Q 003373 40 HILTSKDR-EGEVQILKDQNDIIEEVVDEV------VHAYHTGFNKAIQN-------YSQILRLFSESAESIKELKVDLA 105 (825)
Q Consensus 40 ~~L~s~~~-e~~~~~l~~~~~~~~~~L~~v------V~~h~~~Fn~sI~s-------y~~i~~~i~~Sq~~i~~lk~~L~ 105 (825)
.-|.+.|- ...+..+++....+++.|+.+ |.+|.......-.. -......+...+.++..+++.+.
T Consensus 761 ~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 840 (1201)
T PF12128_consen 761 QELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELN 840 (1201)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44544433 335666666666666666655 33433332333332 44555666666777777777777
Q ss_pred HHHHHhccCcHHH
Q 003373 106 EAKRRLGTRNKQL 118 (825)
Q Consensus 106 ~~k~~L~~~~~~L 118 (825)
.++..+..++.+|
T Consensus 841 ~~~~~~~~~~~~l 853 (1201)
T PF12128_consen 841 QLQKEVKQRRKEL 853 (1201)
T ss_pred HHHHHHHHHHHHH
Confidence 7777766666555
No 79
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=27.20 E-value=8e+02 Score=26.33 Aligned_cols=66 Identities=9% Similarity=0.136 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003373 47 REGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYS-QILRLFSESAESIKELKVDLAEAKRRLG 112 (825)
Q Consensus 47 ~e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~-~i~~~i~~Sq~~i~~lk~~L~~~k~~L~ 112 (825)
....+...-+....+..........=.+.|+..+.++- .-+..|+..+.++...|-.+..||..+.
T Consensus 79 lg~~L~~~g~a~~~ia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkLe~~RLd~D~~k~r~~ 145 (244)
T cd07595 79 LGKVLKLCGEAQNTLARELVDHEMNVEEDVLSPLQNILEVEIPNIQKQKKRLSKLVLDMDSARSRYN 145 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 34445555555555555555555555667777777777 3556777777777777777777777774
No 80
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=25.98 E-value=5.3e+02 Score=28.86 Aligned_cols=73 Identities=19% Similarity=0.167 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhhcHHHHHHHHhccCHHHHHHH
Q 003373 84 SQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQL 163 (825)
Q Consensus 84 ~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~iL~~Ie~l~~vP~kie~lis~k~yl~A~~l 163 (825)
.-|...+.+.+.+|...|+.|++..+ ++-+.-... .+-|..|+ |.|..+=+++|+|-.++..-+|..+
T Consensus 86 ~~l~~~v~d~~rri~~~kerL~e~~e-------e~~~e~~~k---~~~v~~l~--e~I~~~l~~~E~LG~eG~Veeaq~~ 153 (319)
T KOG0796|consen 86 EILERFVADVDRRIEKAKERLAETVE-------ERSEEAARK---AEKVHELE--EKIGKLLEKAEELGEEGNVEEAQKA 153 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh-------hhhhHHHHH---HHHHHHHH--HHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 44566678888999999999999833 111111111 12222222 5666778899999999999988887
Q ss_pred HHHHH
Q 003373 164 HAQSA 168 (825)
Q Consensus 164 L~~s~ 168 (825)
+.++-
T Consensus 154 ~~e~E 158 (319)
T KOG0796|consen 154 MKEVE 158 (319)
T ss_pred HHHHH
Confidence 77543
No 81
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=25.97 E-value=1e+03 Score=27.77 Aligned_cols=60 Identities=12% Similarity=0.138 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhH--HHHHHHHHHHHHHHHHHHHHHHH
Q 003373 48 EGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYS--QILRLFSESAESIKELKVDLAEA 107 (825)
Q Consensus 48 e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~--~i~~~i~~Sq~~i~~lk~~L~~~ 107 (825)
....++|++....+..+++..+..+.+.++..-..+. .-...+...++++..+.+.|..+
T Consensus 258 ~el~qrLd~l~~RL~~am~~~L~~~r~rL~~L~~RL~~~~P~~~L~~~~qrLd~L~~RL~~a 319 (432)
T TIGR00237 258 DELLQRLDGFNVRLHRAFDTLLHQKKARLEQLVASLQRQHPQNKLALQQLQFEKLEKRKQAA 319 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445677777777777777777777777776555543 22344556666666666666554
No 82
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.38 E-value=1.8e+03 Score=29.73 Aligned_cols=168 Identities=9% Similarity=0.028 Sum_probs=0.0
Q ss_pred CCCCCCC-CchHHHHHHHHHhHhhcCCCCCCchHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHh
Q 003373 4 FDGLPIS-PEKAYLREELARIEVSWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQN 82 (825)
Q Consensus 4 ~~~~p~~-~~~~~l~~~l~~I~~ew~~~~f~~~~~~l~~L~s~~~e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~s 82 (825)
++|++.+ .+...+..+++.|...-. ..+.++..+....+.-...++..+++=-......-..
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~e~~~~~~~~q~~L~ei~~~l~~~eq~ 441 (1311)
T TIGR00606 379 LDGFERGPFSERQIKNFHTLVIERQE-----------------DEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRT 441 (1311)
T ss_pred cCCCCCcccchHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhhcHHHHHHHHhccCHHHHHH
Q 003373 83 YSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQ 162 (825)
Q Consensus 83 y~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~iL~~Ie~l~~vP~kie~lis~k~yl~A~~ 162 (825)
.......+......+..+...|.......+ +|..+-.+-..+..-++-+..-........+|+. .-.-..
T Consensus 442 ~~~~~e~~~~~~~~i~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~------~~~~~~ 511 (1311)
T TIGR00606 442 IELKKEILEKKQEELKFVIKELQQLEGSSD----RILELDQELRKAERELSKAEKNSLTETLKKEVKS------LQNEKA 511 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccChH----HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH------HHHHHH
Q ss_pred HHHHHHHHhcccCCCCcCCcHHHHHHHHHhHHHHHHH
Q 003373 163 LHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYK 199 (825)
Q Consensus 163 lL~~s~~~l~~~~L~~I~aL~~lr~~L~~~~~~L~d~ 199 (825)
-|..-+..++. ++.......+.|..|..+++.+.+.
T Consensus 512 ~le~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~k 547 (1311)
T TIGR00606 512 DLDRKLRKLDQ-EMEQLNHHTTTRTQMEMLTKDKMDK 547 (1311)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
No 83
>smart00188 IL10 Interleukin-10 family. Interleukin-10 inhibits the synthesis of a number of cytokines, including IFN-gamma, IL-2, IL-3, TNF and GM-CSF produced by activated macrophages and by helper T cells.
Probab=25.23 E-value=5.6e+02 Score=25.22 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 003373 82 NYSQILRLFSESAESIKELKVDLAEAKRRLGTR 114 (825)
Q Consensus 82 sy~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~ 114 (825)
....+...|+.-.+....+|+.|..|...+.|.
T Consensus 65 ~~~~~k~~i~Sl~~~f~~lk~~l~~C~~~~~Ce 97 (137)
T smart00188 65 HGPDIKEHVNSLGEKLKTLRLRLRRCHRFLPCE 97 (137)
T ss_pred CCcchhhhHHHHHHHHHHHHHHHHHCccccCcc
Confidence 445668888888899999999999999999993
No 84
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=25.19 E-value=4e+02 Score=33.04 Aligned_cols=82 Identities=17% Similarity=0.244 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCccccccCCCcccccccccCCcccchHHHHHHHHHHHHHHHHhhHH--
Q 003373 622 LLAFVENFVKDHLLPTMFVDYRKGVQQAISSPAAFRPRAHTAATYVPSIEKGRPVLQGLLAIDFLAKEVLGWAQAMPK-- 699 (825)
Q Consensus 622 l~~Fl~~Fv~~~FLp~l~~~~~~~~~~a~~~~dAfk~~~~~~~~~~~~l~~~rPil~~~~~v~~~~~el~~~l~t~p~-- 699 (825)
.-..+.+|| ..|+.--...+.+-++.+++ .|.|+|.....+ | =.|+|.+++++.+...-+-.||-
T Consensus 513 vE~~i~~lv-~~Wi~~~~~~l~ewv~ra~~-qE~W~P~S~~e~-h----------s~SvVEvfri~~eTvd~ff~L~~~~ 579 (677)
T PF05664_consen 513 VESLISNLV-KRWIQEQLERLNEWVDRAIK-QEKWNPRSKEER-H----------SPSVVEVFRIFNETVDQFFQLPWPM 579 (677)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHh-hccCCcCCCCCC-C----------cchHHHHHHHHHHHHHHHHcCCCCC
Confidence 344555554 23445556778889999987 788999864322 2 26889999999999998888882
Q ss_pred ---hHHHHHHHHHHHHHHHH
Q 003373 700 ---FAADLVKYVQTFLERTY 716 (825)
Q Consensus 700 ---y~~~~~~lv~~~L~~y~ 716 (825)
+-.++.+-+-..|++|-
T Consensus 580 ~~~~l~~L~~gld~~lq~Y~ 599 (677)
T PF05664_consen 580 HADFLQALSKGLDKALQRYC 599 (677)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 85
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=24.99 E-value=9.1e+02 Score=26.18 Aligned_cols=101 Identities=12% Similarity=0.195 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhHHHHHHHHHHH
Q 003373 58 NDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQ 137 (825)
Q Consensus 58 ~~~~~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~iL~~ 137 (825)
.+.++..|+. ++.|-..+...|.....+...+.++...|..+=.++...-.-|..++.+|..|............-+
T Consensus 37 l~~l~~~l~~-ln~~~~~l~~~l~~l~~v~~~~a~aapdL~~~l~~~~~~s~tL~~~~~~L~~lL~~~~~~a~~~~~~-- 113 (267)
T PF11887_consen 37 LDDLNTLLAT-LNPRLPQLREDLRNLADVADTYADAAPDLLDALDNLTTTSRTLVDQRQQLDALLLSATGLADTGTDF-- 113 (267)
T ss_pred HHHHHHHHHH-HhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--
Confidence 3444433332 4556677888899999999999999999999999999999999999999998887776554333211
Q ss_pred HHHhhhcHHHHHHHHhccCHHHHHHHHHHHHHHhcc
Q 003373 138 IEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLER 173 (825)
Q Consensus 138 Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~ 173 (825)
++ . .+..+..+++.|.....++.+
T Consensus 114 l~---~---------n~~~L~~~~~~L~p~~~lL~~ 137 (267)
T PF11887_consen 114 LA---D---------NRDNLIRALDDLRPTTDLLAK 137 (267)
T ss_pred HH---H---------hHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 123566778888888888876
No 86
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=24.55 E-value=7.1e+02 Score=24.80 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=18.9
Q ss_pred HhccCHHHHHHHHHHHHHHhcccCCCCcCCcHH
Q 003373 152 IAGKQYYAAVQLHAQSALMLEREGLQTVGALQD 184 (825)
Q Consensus 152 is~k~yl~A~~lL~~s~~~l~~~~L~~I~aL~~ 184 (825)
-+++.|..+++-+.....-....-+..+..+++
T Consensus 123 k~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~q~ 155 (191)
T cd07610 123 KADEEYREQVEKLNPAQSEYEEEKLNKIQAEQE 155 (191)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 456678888777777666555433333333333
No 87
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=24.07 E-value=1.2e+03 Score=27.09 Aligned_cols=107 Identities=11% Similarity=0.157 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhhcHHHHHHHHhccCHHHHHHHHHHH
Q 003373 88 RLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQS 167 (825)
Q Consensus 88 ~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s 167 (825)
.-+.+-++.+..|......+++.|....+.+..++..- ..+++.++.... ++..+| .+..-+.+-
T Consensus 255 ~V~~el~~~~~~~~~~~~~~~k~l~~~~~~~~~~~~~~------~~~~~~l~~~~~---~l~~yl------~~~~~~~~~ 319 (412)
T PF04108_consen 255 DVVKELQERLDEMENNEERTKKLLQSQRDHIRELYNAL------SEALEELRKFGE---RLPSYL------AAFHDFEER 319 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH---HHHHHH------HHHHHHHHH
Confidence 33566677777777777777777776666666555432 222222222222 333332 333333333
Q ss_pred HHHhcccCCCCcCCcHHHHHHHHHhHHHHHHHHHHHHHHhHhc
Q 003373 168 ALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLYN 210 (825)
Q Consensus 168 ~~~l~~~~L~~I~aL~~lr~~L~~~~~~L~d~LieEL~~~lYl 210 (825)
+.....+-...+..+.+|+........ -|+.|+-|+++-=+.
T Consensus 320 ~~~~~~~i~~~~~~l~~L~~~Y~~F~~-aY~~LL~Ev~RRr~~ 361 (412)
T PF04108_consen 320 WEEEKESIQAYIDELEQLCEFYEGFLS-AYDSLLLEVERRRAV 361 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 332222233455666677776666664 566678888766553
No 88
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=24.06 E-value=1.3e+03 Score=27.73 Aligned_cols=82 Identities=13% Similarity=0.203 Sum_probs=48.2
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhHHHHHHHHHH-HHHHhhhcHHHHHHHHh
Q 003373 75 GFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLD-QIEGIAKVPARIEKLIA 153 (825)
Q Consensus 75 ~Fn~sI~sy~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~iL~-~Ie~l~~vP~kie~lis 153 (825)
+.|--+.++.+=...+..+.+.-..+|.++.+=+..+ ...+..|+ +++.+..--.+.+.+-+
T Consensus 126 ~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n~~~~-----------------Ge~~~~lEk~Le~i~~~l~qf~~lt~ 188 (570)
T COG4477 126 DLNELVESEEKNSEEIDHVLELYEELRRDVLANRHQY-----------------GEAAPELEKKLENIEEELSQFVELTS 188 (570)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhh-----------------hhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444444555444444444444444444444333333 33333332 35555555667888999
Q ss_pred ccCHHHHHHHHHHHHHHhcc
Q 003373 154 GKQYYAAVQLHAQSALMLER 173 (825)
Q Consensus 154 ~k~yl~A~~lL~~s~~~l~~ 173 (825)
+++|.+|.+.|.++-..+-.
T Consensus 189 ~Gd~ieA~evl~~~ee~~~~ 208 (570)
T COG4477 189 SGDYIEAREVLEEAEEHMIA 208 (570)
T ss_pred CCChhHHHHHHHHHHHHHHH
Confidence 99999999999988776543
No 89
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=23.84 E-value=1.7e+03 Score=28.96 Aligned_cols=131 Identities=16% Similarity=0.183 Sum_probs=75.6
Q ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCcHHHHHHHHH-HhHHHHHHHHHHHHHHhhhc-----
Q 003373 74 TGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLG---TRNKQLHQLWYR-SVTLRHIISLLDQIEGIAKV----- 144 (825)
Q Consensus 74 ~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~---~~~~~L~~L~~~-s~~~~~~i~iL~~Ie~l~~v----- 144 (825)
...++-+..|++......+.+.+|+.+++.|......+. ....+|++.+.. ..+|+..-+-+..++.++.-
T Consensus 467 e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~EN 546 (1195)
T KOG4643|consen 467 EELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEEN 546 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 345677888899999999999999999999988876654 455556555544 44566665666666555432
Q ss_pred ---HHHHHHHHhccCHHHHHHHHHHHHHHhcccCCCCcCCcHHHHHHHHHhHHHHHHHHHHHH
Q 003373 145 ---PARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDL 204 (825)
Q Consensus 145 ---P~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~aL~~lr~~L~~~~~~L~d~LieEL 204 (825)
-.+|..|...-.=-.+.+=..+-.++.+...=.-|.||..+|-+.+..+..+.+-=+.|.
T Consensus 547 a~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~idaL~alrrhke~LE~e~mnQql~~d 609 (1195)
T KOG4643|consen 547 AHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKYIDALNALRRHKEKLEEEIMNQQLFED 609 (1195)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 233333333222223333333344444442223346666666666666555544433333
No 90
>PRK09039 hypothetical protein; Validated
Probab=23.57 E-value=1.1e+03 Score=26.62 Aligned_cols=13 Identities=23% Similarity=0.220 Sum_probs=5.7
Q ss_pred chhHHHHHHHHHH
Q 003373 46 DREGEVQILKDQN 58 (825)
Q Consensus 46 ~~e~~~~~l~~~~ 58 (825)
..+.++..++..+
T Consensus 78 ~l~~~l~~l~~~l 90 (343)
T PRK09039 78 DLQDSVANLRASL 90 (343)
T ss_pred hHHHHHHHHHHHH
Confidence 3444444444443
No 91
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=23.34 E-value=7.6e+02 Score=24.72 Aligned_cols=48 Identities=21% Similarity=0.176 Sum_probs=35.8
Q ss_pred HHHHHHhHHHHHHHhHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcc
Q 003373 66 DEVVHAYHTGFNKAIQNYSQILRL-FSESAESIKELKVDLAEAKRRLGT 113 (825)
Q Consensus 66 ~~vV~~h~~~Fn~sI~sy~~i~~~-i~~Sq~~i~~lk~~L~~~k~~L~~ 113 (825)
...|..=.++||--..-|.++++. +.+-.++|..+|.-++.++..++-
T Consensus 92 ~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~~d~~~ 140 (157)
T COG3352 92 VSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVIKDLRE 140 (157)
T ss_pred HHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 334555568899999999888888 777778888888877777766543
No 92
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=22.97 E-value=3e+02 Score=25.28 Aligned_cols=81 Identities=10% Similarity=0.089 Sum_probs=58.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhcHHHHHHHHhccCHHHHHHHHHHHHHHhcccCCCCc-CCcHHHHHHHHHhHHHH
Q 003373 118 LHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTV-GALQDVRSELTKLRGVL 196 (825)
Q Consensus 118 L~~L~~~s~~~~~~i~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I-~aL~~lr~~L~~~~~~L 196 (825)
+..|-....+++.+++-|..++.=..|+-.|-..+-......|...|..-...++. .+..+ ..+.++..++...+..|
T Consensus 22 ~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~-~i~~l~~~~~~l~~~~~elk~~l 100 (105)
T cd00632 22 RQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIEL-RIKRLERQEEDLQEKLKELQEKI 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666666666666667778888888888889999999988888887 66665 56777777777777776
Q ss_pred HHH
Q 003373 197 FYK 199 (825)
Q Consensus 197 ~d~ 199 (825)
.++
T Consensus 101 ~~~ 103 (105)
T cd00632 101 QQA 103 (105)
T ss_pred HHH
Confidence 554
No 93
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.84 E-value=7.4e+02 Score=28.85 Aligned_cols=100 Identities=10% Similarity=0.172 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH------------------HhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003373 47 REGEVQILKDQNDIIEEVVDEVVH------------------AYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAK 108 (825)
Q Consensus 47 ~e~~~~~l~~~~~~~~~~L~~vV~------------------~h~~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk~~L~~~k 108 (825)
...+.++|++..+.++..++..+. .|+..-..+..+-..|++.|.+|+.+ +..=
T Consensus 245 L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~n--------kvvl 316 (439)
T KOG2911|consen 245 LAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQTN--------KVVL 316 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhccc--------HHHH
Q ss_pred HHhccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhhcHHHHHHHHhc
Q 003373 109 RRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAG 154 (825)
Q Consensus 109 ~~L~~~~~~L~~L~~~s~~~~~~i~iL~~Ie~l~~vP~kie~lis~ 154 (825)
..+..-..-|+........+..+-++||+|++-..-.++|+..|+.
T Consensus 317 ~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~ 362 (439)
T KOG2911|consen 317 QAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDALAS 362 (439)
T ss_pred HHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhc
No 94
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=22.61 E-value=1.9e+03 Score=29.11 Aligned_cols=64 Identities=16% Similarity=0.112 Sum_probs=49.9
Q ss_pred HHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhHHH
Q 003373 66 DEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLR 129 (825)
Q Consensus 66 ~~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~ 129 (825)
.+...+-.++.+.+=..-..+...|..+|+.+.++.+....+...+..-...|.+||..-.+.+
T Consensus 1569 ~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk 1632 (1758)
T KOG0994|consen 1569 VEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELK 1632 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445556666666677778888888999999999999999999999999999998766544
No 95
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=22.41 E-value=7.9e+02 Score=25.78 Aligned_cols=136 Identities=13% Similarity=0.241 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHh-----HHHHH
Q 003373 57 QNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSV-----TLRHI 131 (825)
Q Consensus 57 ~~~~~~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~-----~~~~~ 131 (825)
.++.+...|+.+|..| +++.-+ .++-......|..|...+..|..+|.++++.|..-. +.+.+
T Consensus 16 n~e~lk~~v~~~~~~Y-~~~vvT-----------ee~ik~aKk~rA~LNKl~k~id~~RK~ikk~~~~P~~~Fe~~~K~l 83 (215)
T PF07083_consen 16 NFEELKAEVDEAVEKY-KGYVVT-----------EENIKDAKKDRAELNKLKKAIDDKRKEIKKEYSKPIKEFEAKIKEL 83 (215)
T ss_pred CHHHHHHHHHHHHHHh-CCcccC-----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 3567777777777665 333221 244455667788888888899999999998888766 34555
Q ss_pred HHHHHH-HHHhhhcHHHHHHHHhccCHHHHHHHHHHHHHHhcccCCCCcCCcHHHHHHHHHhHHHHHHHHHHHHHHhH
Q 003373 132 ISLLDQ-IEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHL 208 (825)
Q Consensus 132 i~iL~~-Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~aL~~lr~~L~~~~~~L~d~LieEL~~~l 208 (825)
+..++. +..|..-=..+|..-.+.+......++.+-..-..= +...+..+ +...+.+...++-. +++|+.+.+
T Consensus 84 ~~~i~~~~~~I~~~ik~~Ee~~k~~k~~~i~~~~~~~~~~~~v-~~~~fe~~--~~~~wlnks~s~kk-~~eei~~~i 157 (215)
T PF07083_consen 84 IAPIDEASDKIDEQIKEFEEKEKEEKREKIKEYFEEMAEEYGV-DPEPFERI--IKPKWLNKSYSLKK-IEEEIDDQI 157 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHhhh--cchHHhhcCCcHHH-HHHHHHHHH
Confidence 555543 344444444455555555555555555544433321 12222222 44555555555555 555555533
No 96
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=21.99 E-value=1.4e+03 Score=27.40 Aligned_cols=39 Identities=13% Similarity=0.136 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 003373 89 LFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVT 127 (825)
Q Consensus 89 ~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~ 127 (825)
.+.++...+..+...|..-...+...-..|.++-.+-..
T Consensus 274 ~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~ 312 (563)
T TIGR00634 274 QVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQ 312 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 333333333333333333333443334444444444333
No 97
>KOG2163 consensus Centromere/kinetochore protein zw10 involved in mitotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=21.82 E-value=8.1e+02 Score=29.90 Aligned_cols=78 Identities=15% Similarity=0.097 Sum_probs=53.7
Q ss_pred HHHHHHhhhcHHHHHHHHhccCHHHHHHHHHHHHHHhcccCCCCc--CCcHHHHHHHHHhHHHH-HHHHHHHHHHhHhcc
Q 003373 135 LDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTV--GALQDVRSELTKLRGVL-FYKVLEDLHAHLYNR 211 (825)
Q Consensus 135 L~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I--~aL~~lr~~L~~~~~~L-~d~LieEL~~~lYlK 211 (825)
|.+-+++.-.-+...--...|.|.++.+.|.++.++++.++=.++ .++.++...+.-++... |+..-+-.+...|.|
T Consensus 107 l~~~qev~~~~E~~ncve~~kai~~~lq~l~ea~kll~~~grd~fd~~~lk~l~~vlrI~k~ne~yel~a~~~~~~~w~~ 186 (719)
T KOG2163|consen 107 LVEEQEVIMRSETTNCVEWGKAILACLQFLNEANKLLEGIGRDGFDMSVLKHLAAVLRILKYNERYELSADYERAMNWPK 186 (719)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHhccc
Confidence 555556666566666667788999999999999999876544444 67888888888877744 444444455555554
Q ss_pred C
Q 003373 212 G 212 (825)
Q Consensus 212 s 212 (825)
-
T Consensus 187 ~ 187 (719)
T KOG2163|consen 187 L 187 (719)
T ss_pred C
Confidence 4
No 98
>PHA00212 putative transcription regulator
Probab=21.73 E-value=86 Score=25.55 Aligned_cols=19 Identities=47% Similarity=0.836 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhhhhhHHH
Q 003373 622 LLAFVENFVKDHLLPTMFV 640 (825)
Q Consensus 622 l~~Fl~~Fv~~~FLp~l~~ 640 (825)
|..|-.+|+++..|||+.+
T Consensus 29 l~~~s~~f~~~~l~pql~e 47 (63)
T PHA00212 29 LKDFSVQFIKDSLLPQLFE 47 (63)
T ss_pred HHHHHHHHHHHhHHHHHHH
Confidence 4678889999999999985
No 99
>PRK10884 SH3 domain-containing protein; Provisional
Probab=21.61 E-value=9.4e+02 Score=25.17 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 003373 47 REGEVQILKDQNDIIEEVVDEVVHA 71 (825)
Q Consensus 47 ~e~~~~~l~~~~~~~~~~L~~vV~~ 71 (825)
....+.+++...+.+...|+++-++
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3455667777777777777775543
No 100
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=21.42 E-value=1.4e+03 Score=27.07 Aligned_cols=149 Identities=11% Similarity=0.207 Sum_probs=72.7
Q ss_pred HHHHHHHhHhhcCCCC-CCchHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHH
Q 003373 16 LREELARIEVSWVAPR-FDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESA 94 (825)
Q Consensus 16 l~~~l~~I~~ew~~~~-f~~~~~~l~~L~s~~~e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq 94 (825)
|..++..|+.-|...+ ++|...++.+| +.....+-..+...++.. +-|. +.|......+..+.
T Consensus 124 i~~l~~~l~~iw~~S~~y~~~~R~~~Ll------------~~isn~ii~~~~~~l~~~-~l~~---~~~~~~~~~l~~~~ 187 (579)
T PF08385_consen 124 IPPLFHHLRLIWRISRYYYPPERMTSLL------------EKISNQIIQKCQKYLDPS-DLFS---GDYDEFIKKLNECI 187 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCchhHHHHHH------------HHHHHHHHHHHHHHhCch-hhhc---CCHHHHHHHHHHHH
Confidence 4445555555565432 45555555444 334444444444444222 1111 25556666666666
Q ss_pred HHHHHHHHHHHHHHHHhc--cC-cH---HHHHHHHHHhHHHHHHHHHHHHHHhhhcHHHHHHHHhcc-----------CH
Q 003373 95 ESIKELKVDLAEAKRRLG--TR-NK---QLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGK-----------QY 157 (825)
Q Consensus 95 ~~i~~lk~~L~~~k~~L~--~~-~~---~L~~L~~~s~~~~~~i~iL~~Ie~l~~vP~kie~lis~k-----------~y 157 (825)
+-...-++.....+..+. .+ +. +...-..- .+.....+-|+.|.+++..=.++..++... ..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~vf-~~~~~f~~Rl~~i~~i~~~~~~f~~l~~~~~~g~~g~~~~~~~ 266 (579)
T PF08385_consen 188 DILESWKETYEEFREQIRELTRKRSHPWEFDEKKVF-GRLDAFKERLEDIKEIRETHEQFSRLLKSEFGGLRGKELSEGI 266 (579)
T ss_pred HHHHHHHHHHHHHHHHhhhcccccCCCCcccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhHHHH
Confidence 666666666666666654 22 11 11111111 125556666666666666666555555444 33
Q ss_pred HHHHHHHHHHHHHhcc--cCCCCcCC
Q 003373 158 YAAVQLHAQSALMLER--EGLQTVGA 181 (825)
Q Consensus 158 l~A~~lL~~s~~~l~~--~~L~~I~a 181 (825)
.....-+.+++..+.. +++.++..
T Consensus 267 ~~i~~~~~~~~~~~~~~~yd~ld~~~ 292 (579)
T PF08385_consen 267 DEIEEEFNEAYEPFKSLDYDILDVSN 292 (579)
T ss_pred HHHHHHHHHHHHHHhcCCCCcCCCcc
Confidence 3444455555555543 23544433
No 101
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.23 E-value=8.5e+02 Score=24.49 Aligned_cols=79 Identities=11% Similarity=0.173 Sum_probs=61.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHH
Q 003373 47 REGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRS 125 (825)
Q Consensus 47 ~e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s 125 (825)
....+..+-+.++.+...+..........|...+.-|..++..+.+.=..=..+-..+..+...+..++..+.+|-..+
T Consensus 62 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~y~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~ 140 (218)
T cd07596 62 LGEALSKLGKAAEELSSLSEAQANQELVKLLEPLKEYLRYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAP 140 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 5566667777777778888888888888888888888888888877777777777777888888888877777775543
No 102
>PRK11281 hypothetical protein; Provisional
Probab=21.14 E-value=1.5e+03 Score=29.85 Aligned_cols=123 Identities=18% Similarity=0.124 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhHH-HHHHHHHHHHHHhhhcHHHHHHHHhc--cCHHHHHH
Q 003373 86 ILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTL-RHIISLLDQIEGIAKVPARIEKLIAG--KQYYAAVQ 162 (825)
Q Consensus 86 i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~-~~~i~iL~~Ie~l~~vP~kie~lis~--k~yl~A~~ 162 (825)
+-..+.+-.+...+..+.|.+.++.|..... ...+.+.. .+.-+-+.+|+...+.|.--..-+++ +.-++|-.
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT----~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~ 201 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQT----QPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQ 201 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----chHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHH
Confidence 3344444444455555555555555444222 22222222 44444445554433331100000222 23344444
Q ss_pred HHHHHHHHhcccCCCCcCCcHHH---HHHHHHhHHHHHHHHHHHHHHhHhccC
Q 003373 163 LHAQSALMLEREGLQTVGALQDV---RSELTKLRGVLFYKVLEDLHAHLYNRG 212 (825)
Q Consensus 163 lL~~s~~~l~~~~L~~I~aL~~l---r~~L~~~~~~L~d~LieEL~~~lYlKs 212 (825)
.+.++..-.++.+|.+-..+++| |.++...+....+..++.|++.+..|-
T Consensus 202 ~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr 254 (1113)
T PRK11281 202 ALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKR 254 (1113)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445567766665554 567778888888899999999998764
No 103
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=21.00 E-value=7.9e+02 Score=26.29 Aligned_cols=73 Identities=16% Similarity=0.242 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 003373 48 EGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSV 126 (825)
Q Consensus 48 e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~ 126 (825)
......|+...+.+-+.+..+|. |..+...+.+-|+..+..++.|-. -..|..+=..|+...+.+.+++.+..
T Consensus 28 ~~~ie~LE~qLk~L~k~~~~lv~-~r~eLa~~~~eFa~s~~~L~~~E~-----~~~Ls~als~laev~~~i~~~~~~qa 100 (234)
T cd07665 28 LQEVECEEQRLRKLHAVVETLVN-HRKELALNTALFAKSLAMLGSSED-----NTALSRALSQLAEVEEKIEQLHQEQA 100 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccc-----chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667777777777777665 558999999999999999988874 23344444445555556666665544
No 104
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=20.99 E-value=7e+02 Score=25.34 Aligned_cols=39 Identities=23% Similarity=0.263 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHh-HHHHHHHHHH
Q 003373 98 KELKVDLAEAKRRLGTRNKQLHQLWYRSV-TLRHIISLLD 136 (825)
Q Consensus 98 ~~lk~~L~~~k~~L~~~~~~L~~L~~~s~-~~~~~i~iL~ 136 (825)
..+...+..+++.|...-+.|..+..++. .+..+.+++.
T Consensus 141 ~~~~~~~~~~~~~l~~~lekL~~fd~~~~~~~~~~~~~~~ 180 (204)
T PF04740_consen 141 SSFIDSLEKAKKKLQETLEKLRAFDQQSSSIFSEIEELLQ 180 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45555555566555555555555555443 2334333333
No 105
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=20.98 E-value=3.1e+02 Score=27.09 Aligned_cols=76 Identities=16% Similarity=0.119 Sum_probs=47.4
Q ss_pred HHHHHHhhhcHHHHHHHHhccCHHHHHHHHHHHHHHhcccCCCCc--CCcHHHHHHHHHhHHHHHHHHHHHHHHhHhccC
Q 003373 135 LDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTV--GALQDVRSELTKLRGVLFYKVLEDLHAHLYNRG 212 (825)
Q Consensus 135 L~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I--~aL~~lr~~L~~~~~~L~d~LieEL~~~lYlKs 212 (825)
.+.|+..+.==+++..||.+|.|..+...|.--+..+.. +|..| .-+..=|.++......||+.| ++|--....|+
T Consensus 42 ~~~i~~~~~r~~eLk~lI~kk~W~~vrn~irgp~g~Lr~-dl~~l~~sl~p~dqk~a~~L~~~Lf~~L-~~LD~AA~~kd 119 (142)
T TIGR03042 42 AEGIEAAKDRLPELASLVAKEDWVFTRNLIHGPMGEVRR-EMTYLNQSLLPKDQKEALALAKELKDDL-EKLDEAARLQD 119 (142)
T ss_pred HHHHHHHHHhhHHHHHHHhhcchHHHHHHHhccHHHHHH-HHHHHHHccCHHhHHHHHHHHHHHHHHH-HHHHHHHHhcC
Confidence 344555555445599999999999998888766666555 55554 334455666666666666654 34444444444
No 106
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=20.78 E-value=1.5e+03 Score=27.28 Aligned_cols=48 Identities=6% Similarity=0.176 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 003373 57 QNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLA 105 (825)
Q Consensus 57 ~~~~~~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk~~L~ 105 (825)
..+.++.+|++ +.+|-++...+|.+|....+.+.++|.++..+...+.
T Consensus 125 lS~~ledaL~a-aq~~ad~l~q~~~~~~~Aq~~l~~aq~~l~~lq~~a~ 172 (593)
T PRK15374 125 VSKEFQTALGE-AQEATDLYEASIKKTDTAKSVYDAAEKKLTQAQNKLQ 172 (593)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 34555666654 6789999999999999999999999999998866544
No 107
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=20.74 E-value=2e+03 Score=28.75 Aligned_cols=119 Identities=20% Similarity=0.167 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhhc---------HHHHHHHHhc
Q 003373 84 SQILRLFSESAESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKV---------PARIEKLIAG 154 (825)
Q Consensus 84 ~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~iL~~Ie~l~~v---------P~kie~lis~ 154 (825)
.++-..+.....++.++++.+.+..+.+..-+..+..+= +...+.-+-|.+|+...+. |.+...+-++
T Consensus 105 ~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~p---q~~~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae 181 (1109)
T PRK10929 105 DALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLP---QQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAE 181 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhch---hhHHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHH
Confidence 344444445555555555555554444433333333332 2235566666777654444 3344444444
Q ss_pred cCHHHHHHHHHHHHHHhcccCCCCcC---CcHHHHHHHHHhHHHHHHHHHHHHHHhHhccC
Q 003373 155 KQYYAAVQLHAQSALMLEREGLQTVG---ALQDVRSELTKLRGVLFYKVLEDLHAHLYNRG 212 (825)
Q Consensus 155 k~yl~A~~lL~~s~~~l~~~~L~~I~---aL~~lr~~L~~~~~~L~d~LieEL~~~lYlKs 212 (825)
..++.+.. ..++. ++.+-. .|..+|.++..++....+..++.|++.+..|.
T Consensus 182 ~~~l~~~~------~~l~~-~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR 235 (1109)
T PRK10929 182 SAALKALV------DELEL-AQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQR 235 (1109)
T ss_pred HHHHHHHH------HHHHH-HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444432 22222 333333 34556778888888899999999999998764
No 108
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=20.58 E-value=4e+02 Score=32.22 Aligned_cols=12 Identities=17% Similarity=0.446 Sum_probs=8.4
Q ss_pred HHHHHhhhcHHH
Q 003373 136 DQIEGIAKVPAR 147 (825)
Q Consensus 136 ~~Ie~l~~vP~k 147 (825)
.++++|+++|.+
T Consensus 251 ~~~~~lk~ap~~ 262 (555)
T TIGR03545 251 ADLAELKKAPQN 262 (555)
T ss_pred HHHHHHHhccHh
Confidence 556777777765
No 109
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=20.45 E-value=1.6e+03 Score=27.44 Aligned_cols=122 Identities=15% Similarity=0.137 Sum_probs=71.0
Q ss_pred HHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-cHHHHHHHHHHh-HHHHHHHHHHHHHHhhhcHH
Q 003373 69 VHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDLAEAKRRLGTR-NKQLHQLWYRSV-TLRHIISLLDQIEGIAKVPA 146 (825)
Q Consensus 69 V~~h~~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~-~~~L~~L~~~s~-~~~~~i~iL~~Ie~l~~vP~ 146 (825)
|...+...+-.+..+-.....|-..+..+..+++.+..++...... .+++..+-.--. .=+.+.++...|+.++..-.
T Consensus 230 ~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~ 309 (629)
T KOG0963|consen 230 VAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLV 309 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666777777777777788999999998887664 344544433322 33444555566776665433
Q ss_pred HHHHHHhccCHHHHHHHHHHHHHHhcccCCCCcCCcHHHHHHHHHhHHHHHHHHHHHH
Q 003373 147 RIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDL 204 (825)
Q Consensus 147 kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~aL~~lr~~L~~~~~~L~d~LieEL 204 (825)
+. ..-....+..+++.-=.-++.|..++..|+++ ..|+.|-.||
T Consensus 310 ~e------------~e~~~~qI~~le~~l~~~~~~leel~~kL~~~--sDYeeIK~EL 353 (629)
T KOG0963|consen 310 EE------------REKHKAQISALEKELKAKISELEELKEKLNSR--SDYEEIKKEL 353 (629)
T ss_pred HH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--ccHHHHHHHH
Confidence 22 11222233333331112235667777777776 6677777777
No 110
>PF08393 DHC_N2: Dynein heavy chain, N-terminal region 2; InterPro: IPR013602 Dyneins are described as motor proteins of eukaryotic cells, as they can convert energy derived from the hydrolysis of ATP to force and movement along cytoskeletal polymers, such as microtubules. Dyneins generally contain one to three heavy chains, where each heavy chain consists of a C-terminal globular head, a flexible microtubule-binding stalk, and a flexible N-terminal tail known as the cargo-binding domain []. The two categories of dyneins are the axonemal dyneins, which produce the bending motions that propagate along cilia and flagella, and the cytosolic dyneins, which drive a variety of fundamental cellular processes including nuclear migration, organisation of the mitotic spindle, chromosome separation during mitosis, and the positioning and function of many intracellular organelles. Cytoplasmic dyneins contain several accessory subunits ranging from light to intermediate chains. This entry represents a region found C-terminal to the dynein heavy chain N-terminal region 1 (IPR013594 from INTERPRO) in many members of this family. No functions seem to have been attributed specifically to this region. ; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=20.39 E-value=3.4e+02 Score=30.84 Aligned_cols=97 Identities=14% Similarity=0.250 Sum_probs=46.8
Q ss_pred HHHHHHHHHhHhhcCCCCCCchHHHHH-hhccCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHH
Q 003373 14 AYLREELARIEVSWVAPRFDSLPHVVH-ILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSE 92 (825)
Q Consensus 14 ~~l~~~l~~I~~ew~~~~f~~~~~~l~-~L~s~~~e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~ 92 (825)
..|+..|+.|...|....|...++--. +..-.+.+.-...+++....+...+ -..|+..|-.-|.....-+..+.+
T Consensus 142 ~~ie~~L~~i~~~W~~~~f~~~~~~~~~~~il~~~~~i~~~led~~~~L~~m~---~S~~~~~~~~~v~~w~~~L~~~~~ 218 (408)
T PF08393_consen 142 YKIEQSLEKIKEEWKNMEFEFVPYKDKDVFILKNWDEIIQQLEDHLLTLQSMK---SSPFVKPFRDEVEEWEKKLNNIQE 218 (408)
T ss_dssp HHHHHHHHHHHHHHCC-B-EEEEETTT-CEEEE-CHHHHHHHHHHHHHHHHTC---SSTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhceeeeeccccchhheecchHHHHHHHHHHHHHHhccc---ccchhHHHHHHHHHHHHHHHHHHH
Confidence 458889999999999766655444431 1111123333444544443333322 134555555555555555544444
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q 003373 93 SAESIKELKVDLAEAKRRLGT 113 (825)
Q Consensus 93 Sq~~i~~lk~~L~~~k~~L~~ 113 (825)
.-+....+...-.--.....+
T Consensus 219 il~~w~~~Q~~W~yL~~if~~ 239 (408)
T PF08393_consen 219 ILEEWMEVQRKWMYLEPIFSS 239 (408)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 444444444444433344443
Done!