Query 003373
Match_columns 825
No_of_seqs 153 out of 198
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 23:05:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003373.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003373hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d2s_A Exocyst complex compone 93.4 0.17 5.8E-06 52.3 8.1 70 136-205 13-86 (235)
2 2z0v_A SH3-containing GRB2-lik 53.2 1.9E+02 0.0066 29.1 16.9 82 45-126 92-175 (240)
3 3swh_A MUNC13-1, protein UNC-1 50.7 34 0.0012 37.0 8.1 95 621-727 6-110 (341)
4 1zww_A SH3-containing GRB2-lik 35.1 3.7E+02 0.013 27.2 18.4 85 46-130 109-195 (256)
5 2bez_C E2 glycoprotein; coiled 29.8 1.1E+02 0.0039 25.6 6.0 37 64-100 34-74 (77)
6 3ghg_A Fibrinogen alpha chain; 28.6 5.1E+02 0.018 29.4 12.9 57 136-194 128-184 (562)
7 3iyk_A VP5; icosahedral virus; 28.4 5.2E+02 0.018 29.1 12.9 76 62-138 112-188 (526)
8 3ghg_A Fibrinogen alpha chain; 26.3 3.4E+02 0.012 30.8 11.0 24 162-185 179-202 (562)
9 1deq_A Fibrinogen (alpha chain 26.2 6.6E+02 0.023 27.3 14.3 11 184-194 177-187 (390)
10 1deq_A Fibrinogen (alpha chain 23.4 1.9E+02 0.0066 31.5 8.1 138 16-167 54-191 (390)
11 3oa7_A Head morphogenesis prot 23.3 5.5E+02 0.019 25.4 11.0 114 82-212 45-162 (206)
12 3htk_A Structural maintenance 22.0 2.8E+02 0.0095 21.5 7.7 37 68-104 20-56 (60)
13 3zvr_A Dynamin-1; hydrolase, D 20.8 1.7E+02 0.0057 35.1 7.8 46 683-728 448-500 (772)
14 3trt_A Vimentin; cytoskeleton, 20.7 3.3E+02 0.011 22.2 7.6 14 15-28 6-19 (77)
No 1
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=93.37 E-value=0.17 Score=52.32 Aligned_cols=70 Identities=13% Similarity=0.106 Sum_probs=58.0
Q ss_pred HHHHHhhhcHHHHHHHHhccCHHHHHHHHHHHHHHhcccCC----CCcCCcHHHHHHHHHhHHHHHHHHHHHHH
Q 003373 136 DQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGL----QTVGALQDVRSELTKLRGVLFYKVLEDLH 205 (825)
Q Consensus 136 ~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L----~~I~aL~~lr~~L~~~~~~L~d~LieEL~ 205 (825)
+.+..+...|+.|+-+|+.++|.+|++++.+.-..+.+-.- .+..++..++..+.+++..|.+.|++||.
T Consensus 13 ~~~~wl~~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~ 86 (235)
T 2d2s_A 13 QRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL 86 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHcccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778999999999999999999999999999965221 12455778999999999999999999883
No 2
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}
Probab=53.17 E-value=1.9e+02 Score=29.10 Aligned_cols=82 Identities=13% Similarity=0.173 Sum_probs=63.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccC-cHHHHHHH
Q 003373 45 KDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYS-QILRLFSESAESIKELKVDLAEAKRRLGTR-NKQLHQLW 122 (825)
Q Consensus 45 ~~~e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~-~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~-~~~L~~L~ 122 (825)
++....+..+-+....+..........-.+.|+.-+.+|- .-+..|...+.++...|-.+..||..+... ..+|++..
T Consensus 92 s~~g~aL~~~g~a~~~ia~~~~~~~~~v~~~~l~pL~~~l~~d~k~i~~~rKkle~~rLd~D~ak~k~~k~~eeEl~~A~ 171 (240)
T 2z0v_A 92 STFGNALIEVGESMKLMAEVKDSLDINVKQTFIDPLQLLQDKDLKEIGHHLKKLEGRRLDYDYKKKRVGKIPDEEVRQAV 171 (240)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTTTSSCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 3456677777777788888888888888888999999996 677899999999999999999999887542 45555554
Q ss_pred HHHh
Q 003373 123 YRSV 126 (825)
Q Consensus 123 ~~s~ 126 (825)
..-.
T Consensus 172 ~~fe 175 (240)
T 2z0v_A 172 EKFE 175 (240)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 3
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=50.69 E-value=34 Score=36.98 Aligned_cols=95 Identities=12% Similarity=0.126 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CCccccccCCCcccccccccCCcccchHHHHHHHHHHHHHHHHhhH
Q 003373 621 GLLAFVENFVKDHLLPTMFVDYRKGVQQAISS--PAAFRPRAHTAATYVPSIEKGRPVLQGLLAIDFLAKEVLGWAQAMP 698 (825)
Q Consensus 621 ~l~~Fl~~Fv~~~FLp~l~~~~~~~~~~a~~~--~dAfk~~~~~~~~~~~~l~~~rPil~~~~~v~~~~~el~~~l~t~p 698 (825)
++..||..|| ..||...+.+..+.++.|++- .++|.+..... .++ .|++.++.++.+.+..+..+-
T Consensus 6 ~~~~wF~~~V-~~Wl~~~~~k~~~~v~~Ai~~Dk~~~~~~~~~~~-~hS----------sSvvDif~~~~Q~~~~~~~L~ 73 (341)
T 3swh_A 6 EYPAWFEPFV-IQWLDENEEVSRDFLHGALERDKKDGFQQTSEHA-LFS----------CSVVDVFSQLNQSFEIIKKLE 73 (341)
T ss_dssp ---CCSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSSSC-CSC----------THHHHHHHHHHHHHHHHHHSC
T ss_pred CcHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhccCCccccccCc-ccc----------chHHHHHHHHHHHHHHHHHCC
Confidence 4556777777 456778888889999999872 23343321111 111 567889999999999887664
Q ss_pred --------HhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003373 699 --------KFAADLVKYVQTFLERTYERCRTSYMEAV 727 (825)
Q Consensus 699 --------~y~~~~~~lv~~~L~~y~e~c~~~y~~lv 727 (825)
.|-..|++.||..+..|.+.....|....
T Consensus 74 WpD~~~~~~f~t~l~~~i~~~~~~Y~~~l~~~~~~~~ 110 (341)
T 3swh_A 74 CPDPQIVGHYMRRFAKTISNVLLQYADIVSKDFASYC 110 (341)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 68888999999999999999998887643
No 4
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=35.10 E-value=3.7e+02 Score=27.18 Aligned_cols=85 Identities=16% Similarity=0.203 Sum_probs=65.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccC-cHHHHHHHH
Q 003373 46 DREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYS-QILRLFSESAESIKELKVDLAEAKRRLGTR-NKQLHQLWY 123 (825)
Q Consensus 46 ~~e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~-~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~-~~~L~~L~~ 123 (825)
+....+..+.+....++.........-.+.|+.-+..|. ..+..|..++.++...|-.+-.||..+... .++|.....
T Consensus 109 ~~g~aL~~~g~a~~~la~~~~~~~~~i~~~~l~pl~~~l~~~~k~i~k~rkkl~~~rLdyD~~k~k~~k~~eeEle~A~~ 188 (256)
T 1zww_A 109 NFGPALGEVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFGYKKKRQGKIPDEELRQALE 188 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 456677788888888888888888888888999999985 488999999999999999999999987542 455555555
Q ss_pred HHhHHHH
Q 003373 124 RSVTLRH 130 (825)
Q Consensus 124 ~s~~~~~ 130 (825)
+-.++++
T Consensus 189 ~fe~~~e 195 (256)
T 1zww_A 189 KFDESKE 195 (256)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 5
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=29.77 E-value=1.1e+02 Score=25.57 Aligned_cols=37 Identities=14% Similarity=0.367 Sum_probs=23.3
Q ss_pred HHHHHHHHhHHHHHHHhH----hhHHHHHHHHHHHHHHHHH
Q 003373 64 VVDEVVHAYHTGFNKAIQ----NYSQILRLFSESAESIKEL 100 (825)
Q Consensus 64 ~L~~vV~~h~~~Fn~sI~----sy~~i~~~i~~Sq~~i~~l 100 (825)
.++.|||.|.+..+.-+. +|+.|.+.|.+-=.|+..+
T Consensus 34 kiQdVVN~q~~aL~~L~~qL~~NFgAISssi~dIy~RLd~l 74 (77)
T 2bez_C 34 KLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKV 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence 456678888887777764 4666666665555554443
No 6
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=28.63 E-value=5.1e+02 Score=29.37 Aligned_cols=57 Identities=4% Similarity=0.012 Sum_probs=29.7
Q ss_pred HHHHHhhhcHHHHHHHHhccCHHHHHHHHHHHHHHhcccCCCCcCCcHHHHHHHHHhHH
Q 003373 136 DQIEGIAKVPARIEKLIAGKQYYAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRG 194 (825)
Q Consensus 136 ~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s~~~l~~~~L~~I~aL~~lr~~L~~~~~ 194 (825)
++|..|+.+...|+.+..+=+=|+.-- .-.++.+..+.=..+.-=-|++.|-..|++
T Consensus 128 nQlsnIrvLQsnLedq~~kIQRLEvDI--diqirsCKgsCsr~~~~~vd~~sY~~~QKQ 184 (562)
T 3ghg_A 128 EKVQHIQLLQKNVRAQLVDMKRLEVDI--DIKIRSCRGSCSRALAREVDLKDYEDQQKQ 184 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHGGGTBSCCCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhccccccchheeecchHHHHHHHHH
Confidence 344555555555555544433333221 123455566666666666678887665554
No 7
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=28.44 E-value=5.2e+02 Score=29.08 Aligned_cols=76 Identities=7% Similarity=-0.055 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhHHHHHHHHHHHH
Q 003373 62 EEVVDEVVHAYHTGFNKAIQNYSQILRLFSESA-ESIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQI 138 (825)
Q Consensus 62 ~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq-~~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~iL~~I 138 (825)
-...+..|-+.+...-..|..|......+.+.. +++..+.+.|....+.+...+..|.+|... .+-....+.-|+.
T Consensus 112 ~~khn~~I~~k~g~~l~~v~~~~~~~~~~e~~e~~q~~~LekAl~s~~~i~~~e~~~l~~L~~A-L~kE~~~Rt~dE~ 188 (526)
T 3iyk_A 112 RLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKILTEEDLQMRRLATA-LQKEIGERTHAET 188 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHhhcHHHH
Confidence 334444555555566666666666666665544 488889999999999999889998888653 3333333444433
No 8
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.27 E-value=3.4e+02 Score=30.80 Aligned_cols=24 Identities=8% Similarity=-0.024 Sum_probs=10.5
Q ss_pred HHHHHHHHHhcccCCCCcCCcHHH
Q 003373 162 QLHAQSALMLEREGLQTVGALQDV 185 (825)
Q Consensus 162 ~lL~~s~~~l~~~~L~~I~aL~~l 185 (825)
+-+..-+.-+...+|..+...+.|
T Consensus 179 ~~~QKQLeQv~a~dL~p~~~~q~L 202 (562)
T 3ghg_A 179 EDQQKQLEQVIAKDLLPSRDRQHL 202 (562)
T ss_dssp HHHHHHHHHHHTTCCCCSCCCC--
T ss_pred HHHHHHHHHHhhcccCCccccccc
Confidence 333444444444466555554444
No 9
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=26.17 E-value=6.6e+02 Score=27.30 Aligned_cols=11 Identities=9% Similarity=0.145 Sum_probs=7.6
Q ss_pred HHHHHHHHhHH
Q 003373 184 DVRSELTKLRG 194 (825)
Q Consensus 184 ~lr~~L~~~~~ 194 (825)
|++.|-..|++
T Consensus 177 D~e~ye~qqKQ 187 (390)
T 1deq_A 177 DLEDYKNQQKQ 187 (390)
T ss_pred cHHHHHHHHHH
Confidence 67777766666
No 10
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=23.40 E-value=1.9e+02 Score=31.45 Aligned_cols=138 Identities=12% Similarity=0.137 Sum_probs=69.9
Q ss_pred HHHHHHHhHhhcCCCCCCchHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhhHHHHHHHHHHHH
Q 003373 16 LREELARIEVSWVAPRFDSLPHVVHILTSKDREGEVQILKDQNDIIEEVVDEVVHAYHTGFNKAIQNYSQILRLFSESAE 95 (825)
Q Consensus 16 l~~~l~~I~~ew~~~~f~~~~~~l~~L~s~~~e~~~~~l~~~~~~~~~~L~~vV~~h~~~Fn~sI~sy~~i~~~i~~Sq~ 95 (825)
|+..|...+.... ..|.-| ...+.++.+.+..+...+..+.+.--+.|..+-.+=..+.+...+=+.
T Consensus 54 Lqg~Ldk~er~~~--------~rIe~L-----~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~ 120 (390)
T 1deq_A 54 MKGLIDEVDQDFT--------SRINKL-----RDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRS 120 (390)
T ss_pred HHHHHHHhhhhHH--------HHHHHH-----HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Confidence 6666666553322 333333 344455555555555555555554445555444444444444445555
Q ss_pred HHHHHHHHHHHHHHHhccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhhcHHHHHHHHhccCHHHHHHHHHHH
Q 003373 96 SIKELKVDLAEAKRRLGTRNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQYYAAVQLHAQS 167 (825)
Q Consensus 96 ~i~~lk~~L~~~k~~L~~~~~~L~~L~~~s~~~~~~i~iL~~Ie~l~~vP~kie~lis~k~yl~A~~lL~~s 167 (825)
+|.-||..+..--..|..-+..|+.+..+-++...-|++= .=-+-..++-.++--|.-+.|..-.+.|.++
T Consensus 121 ~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c-~~~C~~sC~~~l~~~vD~e~ye~qqKQL~qv 191 (390)
T 1deq_A 121 RIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIK-IRSCKGSCSRALEHKVDLEDYKNQQKQLEQV 191 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccchhhhhhccHHHHHHHHHHHHhh
Confidence 6666666655544444444555555544444444333111 1123345666677777777776655555433
No 11
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=23.34 E-value=5.5e+02 Score=25.37 Aligned_cols=114 Identities=11% Similarity=0.188 Sum_probs=69.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--cHHHHHHH--HHHhHHHHHHHHHHHHHHhhhcHHHHHHHHhccCH
Q 003373 82 NYSQILRLFSESAESIKELKVDLAEAKRRLGTR--NKQLHQLW--YRSVTLRHIISLLDQIEGIAKVPARIEKLIAGKQY 157 (825)
Q Consensus 82 sy~~i~~~i~~Sq~~i~~lk~~L~~~k~~L~~~--~~~L~~L~--~~s~~~~~~i~iL~~Ie~l~~vP~kie~lis~k~y 157 (825)
.|+.+...+...+....++|++|..-+.....+ =+.+++.. .....|... .+|+|+.+ .+
T Consensus 45 ~~~dl~~s~~~l~ae~~~L~~~l~kLeGn~se~ITfe~~~ks~p~i~ke~Y~~L--~Vd~Vd~l--------------dL 108 (206)
T 3oa7_A 45 EYNDLTKSHNTLSKELDNLRSRFGNLEGNTSERITIKNILQSRPDISAEECNFL--MVEQIDSA--------------NL 108 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHCTTCCHHHHHHH--TGGGGGGC--------------CH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHccCCHHhccCHHHHhhcCcccCHHHHhhc--Cccccccc--------------cH
Confidence 455666666668888888888887766554443 12222221 111122211 12222222 56
Q ss_pred HHHHHHHHHHHHHhcccCCCCcCCcHHHHHHHHHhHHHHHHHHHHHHHHhHhccC
Q 003373 158 YAAVQLHAQSALMLEREGLQTVGALQDVRSELTKLRGVLFYKVLEDLHAHLYNRG 212 (825)
Q Consensus 158 l~A~~lL~~s~~~l~~~~L~~I~aL~~lr~~L~~~~~~L~d~LieEL~~~lYlKs 212 (825)
.+-..++.+-.-+++- ++..+..--.+=.=.-..|..|+-..+.+||.++|.+.
T Consensus 109 VqLQNiiKniillleI-Pf~KL~kKlPLiaI~LrYEk~lL~~FaNrLh~~~y~e~ 162 (206)
T 3oa7_A 109 TTLQNTVKEIVLAVGI-PYPKLRRKIPLLAIKLKYENIMLSNFAQRLHRQVYSQE 162 (206)
T ss_dssp HHHHHHHHHHHHHHTC-CGGGHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHC--C
T ss_pred HHHHHHHHHHHHhhcC-cHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 6667777777778877 66666555555555567889999999999999999775
No 12
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=22.01 E-value=2.8e+02 Score=21.48 Aligned_cols=37 Identities=14% Similarity=0.112 Sum_probs=21.6
Q ss_pred HHHHhHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Q 003373 68 VVHAYHTGFNKAIQNYSQILRLFSESAESIKELKVDL 104 (825)
Q Consensus 68 vV~~h~~~Fn~sI~sy~~i~~~i~~Sq~~i~~lk~~L 104 (825)
.+..+-..|..+-..|..+...+...++.|..++..+
T Consensus 20 ~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 20 KCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555566666666666666666666666555543
No 13
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=20.84 E-value=1.7e+02 Score=35.14 Aligned_cols=46 Identities=15% Similarity=0.297 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHh-------hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003373 683 IDFLAKEVLGWAQA-------MPKFAADLVKYVQTFLERTYERCRTSYMEAVL 728 (825)
Q Consensus 683 v~~~~~el~~~l~t-------~p~y~~~~~~lv~~~L~~y~e~c~~~y~~lv~ 728 (825)
|+..+.+|+.+++. -|.-++++.++|..+|+++.+.|.+.-..+|.
T Consensus 448 VdlV~~eL~~iv~~~~~~l~RfP~Lr~ei~~iv~~~Lre~~~~t~~~V~~LId 500 (772)
T 3zvr_A 448 VDMVVSELTSTIRKCSEKLQQYPRLREEMERIVTTHIREREGRTKEQVMLLID 500 (772)
T ss_dssp HHHHHHHHHHHHHHHGGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666654 37889999999999999999999999988885
No 14
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=20.67 E-value=3.3e+02 Score=22.20 Aligned_cols=14 Identities=0% Similarity=0.045 Sum_probs=8.5
Q ss_pred HHHHHHHHhHhhcC
Q 003373 15 YLREELARIEVSWV 28 (825)
Q Consensus 15 ~l~~~l~~I~~ew~ 28 (825)
.|..+|..|+.+|.
T Consensus 6 DL~~il~eiRaQYE 19 (77)
T 3trt_A 6 DCTAAMRDVRQQYE 19 (77)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 35556666666666
Done!