Query 003374
Match_columns 825
No_of_seqs 180 out of 285
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 23:07:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003374.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003374hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gcl_A Hypothetical 63.0 kDa p 100.0 5.4E-28 1.8E-32 254.0 18.7 215 437-681 26-256 (261)
2 3cb6_A FACT complex subunit SP 99.6 4.6E-15 1.6E-19 165.0 14.0 182 17-207 2-188 (444)
3 3biq_A FACT complex subunit SP 99.5 1.2E-13 4E-18 155.0 13.7 179 17-207 2-188 (467)
4 3fss_A Histone chaperone RTT10 99.1 3.9E-10 1.3E-14 116.0 12.0 79 594-676 156-237 (237)
5 2iw2_A XAA-Pro dipeptidase; me 98.5 2.5E-08 8.6E-13 113.3 0.8 172 21-207 17-198 (494)
6 2zsg_A Aminopeptidase P, putat 98.3 2.1E-06 7.2E-11 92.6 11.6 143 30-207 2-144 (359)
7 3q6d_A Proline dipeptidase; st 98.2 1.7E-06 5.7E-11 93.6 7.5 140 27-207 2-141 (356)
8 1wn1_A Dipeptidase; prolidase, 97.8 6.5E-05 2.2E-09 81.6 9.7 136 30-207 1-142 (356)
9 1wy2_A XAA-Pro dipeptidase; st 97.7 0.00011 3.9E-09 79.6 10.0 133 28-207 4-138 (351)
10 4fkc_A XAA-Pro aminopeptidase; 97.6 0.00012 4.3E-09 79.6 9.4 143 26-207 13-161 (377)
11 1kp0_A Creatine amidinohydrola 97.4 0.00047 1.6E-08 75.5 10.9 146 22-207 18-168 (402)
12 4ege_A Dipeptidase PEPE; struc 97.3 0.0012 4E-08 72.6 11.7 152 18-207 5-161 (378)
13 2v3z_A XAA-Pro aminopeptidase; 96.0 0.012 4E-07 65.9 8.4 159 24-207 4-186 (440)
14 3il0_A Aminopeptidase P; XAA-P 95.5 0.061 2.1E-06 49.2 9.8 128 28-197 4-131 (131)
15 4b28_A Metallopeptidase, famil 95.5 0.014 4.9E-07 66.1 6.5 148 26-207 77-240 (470)
16 3ig4_A XAA-Pro aminopeptidase; 95.4 0.062 2.1E-06 60.1 11.1 159 24-207 2-182 (427)
17 3ovk_A Aminopeptidase P, XAA-P 93.9 0.28 9.7E-06 45.3 9.9 123 27-191 7-129 (132)
18 1chm_A Creatine amidinohydrola 93.7 0.37 1.3E-05 52.8 12.1 147 21-207 16-168 (401)
19 3pn9_A Proline dipeptidase; st 93.5 0.32 1.1E-05 44.7 9.5 129 30-197 5-138 (138)
20 3ooo_A Proline dipeptidase; st 89.4 1.1 3.9E-05 41.0 8.3 122 30-191 3-129 (132)
21 3o5v_A X-Pro dipeptidase; crea 89.1 0.85 2.9E-05 41.9 7.2 122 30-191 3-129 (132)
22 3i7m_A XAA-Pro dipeptidase; st 88.1 1.3 4.4E-05 41.0 7.8 126 31-192 5-136 (140)
23 3f5r_A FACT complex subunit PO 88.0 0.99 3.4E-05 45.6 7.3 88 600-692 36-137 (191)
24 3qoc_A Putative metallopeptida 85.1 2.4 8.1E-05 39.4 7.8 123 26-190 8-131 (135)
25 3rva_A Organophosphorus acid a 79.5 2.8 9.4E-05 47.2 7.0 150 22-207 9-170 (451)
26 3ctz_A XAA-Pro aminopeptidase 77.1 8.4 0.00029 45.0 10.4 149 21-207 171-332 (623)
27 3l24_A XAA-Pro dipeptidase; PI 76.7 4.5 0.00015 46.5 7.8 149 23-207 10-170 (517)
28 2ca6_A RAN GTPase-activating p 67.5 1.4 4.9E-05 46.8 0.9 6 381-386 124-129 (386)
29 3ctz_A XAA-Pro aminopeptidase 57.7 76 0.0026 37.0 13.0 145 29-193 7-154 (623)
30 1pfj_A TFIIH basal transcripti 30.6 83 0.0028 29.0 5.9 54 452-506 17-71 (108)
31 3tj1_A RNA polymerase I-specif 29.0 9 0.00031 45.2 -0.9 8 517-524 47-54 (649)
32 3tj1_A RNA polymerase I-specif 25.0 15 0.00051 43.3 -0.1 12 481-492 93-104 (649)
33 2ayu_A Nucleosome assembly pro 24.1 14 0.00049 41.3 -0.5 17 394-410 92-108 (417)
34 3fm2_A Uncharacterized protein 21.5 1.3E+02 0.0046 28.4 5.8 71 474-572 56-128 (135)
No 1
>2gcl_A Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic region; chromaint, double PH domain, yfact, DNA replication, RPA; 2.21A {Saccharomyces cerevisiae} SCOP: b.55.1.10 PDB: 2gcj_A
Probab=99.95 E-value=5.4e-28 Score=254.00 Aligned_cols=215 Identities=15% Similarity=0.288 Sum_probs=168.9
Q ss_pred ccccceeeccCCCCCCccCCceEEEEeceeeeeeCCCCceEEeeccccceeeeccCCCccEEEEEEEccCceeeCceecc
Q 003374 437 IKLHDLWIRPVFGGRGRKIPGTLEAHLNGFRFATSRPEERVDIMFGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTK 516 (825)
Q Consensus 437 ~~L~dl~iRP~~~g~~kr~~G~lE~H~NG~Ry~s~~k~~~idIly~NIKh~FfqP~~~E~ivlihfhLk~PI~~Gkkk~~ 516 (825)
+.+.||.+--. .| | =+|++|.+.||+++ ++..|.|.|+||+|+|++|.+++.++.+++.|++||+|||++|+
T Consensus 26 ~~~~dv~~ltP-RG---r--ydi~~~~~~lrl~g--kt~dyki~~~~I~r~f~LP~pd~~~~~~vi~ld~PirqGqt~y~ 97 (261)
T 2gcl_A 26 VSFQDVFFTTP-RG---R--YDIDIYKNSIRLRG--KTYEYKLQHRQIQRIVSLPKADDIHHMMVMAIEPPLRQGQTTYP 97 (261)
T ss_dssp EEEEEEEEEET-TE---E--EEEEECSSEEEEEE--SSCEEEEEGGGEEEEEEEECTTSSEEEEEEEEEEEEEETTEEEE
T ss_pred EEEcCceEEcC-CC---c--eEEEEecCcEEEeC--CcccceechhhEEEEEEccCCCcCceEEEEecCCCccCCCccCC
Confidence 47778776433 34 2 37999999999997 57789999999999999999999999999999999999999999
Q ss_pred --eeeeeEEeeeeEEecCCCCCCCCChhHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhcCCCCcCCCCceEecccc
Q 003374 517 --DVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERARKNKIN-----MDFQSFVNRVNDLWGQPKFNGLDLEFDQPLR 589 (825)
Q Consensus 517 --dvQFy~E~~e~~~dl~~~r~~~~D~dEle~Eq~Er~~r~kln-----k~F~~F~~~v~~~~~~~~~~~~~~~~~iP~r 589 (825)
.+||-.+. ++..+++. +++++++ +...+|. ..+..+++.+..++ +.++..|..
T Consensus 98 ~lV~qf~~~e-~~~~~ln~------~~~~~~~-----ky~~~L~~~~~g~~~~vv~~ilk~l~--------g~kv~~P~~ 157 (261)
T 2gcl_A 98 FLVLQFQKDE-ETEVQLNL------EDEDYEE-----NYKDKLKKQYDAKTHIVLSHVLKGLT--------DRRVIVPGE 157 (261)
T ss_dssp EEEEEEETTC-EEEEECCC------CHHHHHH-----HTTTTCCSEEEEEHHHHHHHHHHHHH--------CCCEECCCS
T ss_pred eEEEEEeCCC-ceEeeecC------CHHHHhh-----hhccccccccCCcHHHHHHHHHHHhc--------CCeeecCCc
Confidence 48998543 23444443 5666642 3333333 46777888777653 348888964
Q ss_pred CC---CccCc-c-cc-eeEeEeeCcccceeccccCceEEecCceeEEEEEeecC---CcceeeEEEEEecCCCCeEEEec
Q 003374 590 DL---GFHGV-P-HK-ASAFIVPTSSCLVELIETPFLVVTLGEIEIVNLERVGL---GQKNFDMTIVFKDFKKDVLRIDS 660 (825)
Q Consensus 590 ~l---gF~Gv-p-~K-s~v~l~Pt~~cLv~l~e~P~~vitl~eIeiV~fERV~~---~~knFDmvfvfKd~~~~~~~i~~ 660 (825)
.. |.++| | +| ++|+|||+.+||+|+++ |+++|+++||+.|+|+||+. +.|||||++..|+- ...+.|++
T Consensus 158 F~S~~~~~~Vkcs~ka~eG~LypL~~gflF~~K-P~~~i~~~~I~sV~fsrvg~~~~~~rTFdl~v~~k~g-~~~~~Fs~ 235 (261)
T 2gcl_A 158 YKSKYDQCAVSCSFKANEGYLYPLDNAFFFLTK-PTLYIPFSDVSMVNISRAGQTSTSSRTFDLEVVLRSN-RGSTTFAN 235 (261)
T ss_dssp CCCTTSCSCEEEEETTEEEEEEECSSEEEEESS-SCEEEEGGGEEEEEEEC--------CEEEEEEEESTT-CCEEEEEE
T ss_pred cccCCCCceEEEeccCCceEEEEecCceEEeeC-CcEEEEhhHeeEEEEEeccCCcccCceEEEEEEEcCC-CccEEEcc
Confidence 33 33444 3 45 89999999999999997 99999999999999999965 67999999999972 27999999
Q ss_pred ccCCChHhHHHHhhhcCeEEE
Q 003374 661 IPSSSLDSIKEWLDTTDIKYY 681 (825)
Q Consensus 661 Ip~~~ld~Ik~wL~s~~I~~~ 681 (825)
|+++|+..|.+||++++|++-
T Consensus 236 IdreE~~~L~~ylk~k~l~ik 256 (261)
T 2gcl_A 236 ISKEEQQLLEQFLKSKNLRVK 256 (261)
T ss_dssp EEGGGHHHHHHHHHHTTCCEE
T ss_pred cCHHHHHHHHHHHHHcCCeee
Confidence 999999999999999999874
No 2
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone binding module, histone H chaperone, PITA-bread fold; 1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A
Probab=99.59 E-value=4.6e-15 Score=165.04 Aligned_cols=182 Identities=27% Similarity=0.561 Sum_probs=146.3
Q ss_pred CCcccccCHHHHHHHHHHHHHHHccCCC--CCCCCCCEEEEEcCCCCccccchhhhhhhHhhcCCcccceeeEeecCeEE
Q 003374 17 GANAYSINLENFSTRLKALYSHWNKHKS--DYWGSADVLAIATPPASEDLRYLKSSALNIWLLGYEFPETVMVFMKKQIQ 94 (825)
Q Consensus 17 ~Ms~v~ID~~~F~~RLk~L~~~Wk~~~~--~~~~~~dai~i~~G~~~ed~~Y~KStaLq~WLlGYEFpdTlivftk~~i~ 94 (825)
.|+++.|+.+.|.+|+++|.+.|++... ..|.++|+++|..|..+++++|.++++++.||+||+.|++++|+++++.+
T Consensus 2 ~m~~~~~~~~~~~~Rl~~L~~~m~~~~~~~~~~~g~Dalli~~~~~d~~~~y~q~~~~~~yLtG~~~~~~~lvi~~~~~~ 81 (444)
T 3cb6_A 2 AMAEYEIDEITFHKRLGILLTSWKNEEDGKTLFQDCDSILVTVGAHDDTNPYQKSTALHTWLLGYEFPSTLILLEKHRIT 81 (444)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSHHHHHHTSTTCSEEEEEECSCCTTCCCCHHHHHHHHHHSSCCSSEEEEEETTEEE
T ss_pred CCccCCcCHHHHHHHHHHHHHHhhhcCcccccccCCCEEEEEeCCCCCCCCcccchhhhHHHhCCCCCCEEEEEeCCcEE
Confidence 4888889999999999999999986211 13578999999999877778999999999999999999999999999999
Q ss_pred EEechhhhhhhhhhh-ccCCCCccEEEEEeecCCCCChHHHHHHHHHHHhccCCCCCCCCCeEEEeeCCCCCCchHHHHH
Q 003374 95 FLCSQKKASLLGMVK-RSAKDAVGADVVIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWA 173 (825)
Q Consensus 95 ~LtS~KKa~~Le~l~-~~~~~~~~Veilvr~Kd~~~n~~~~fekli~~ik~~~~~~s~~g~kVGvl~Kdk~~G~F~~~W~ 173 (825)
++|...|..+++++. .... .+.++++.+..+... ....|+.+++.++. .+++||+..++...+.+...|.
T Consensus 82 l~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~~d~~~-~~~~~~~~~~~l~~-------~~~~ig~~~~~~~~~~~~~~l~ 152 (444)
T 3cb6_A 82 ILTSVNKANMLTKLAETKGA-AADVNILKRTKDAEE-NKKLFEKIIEYIRA-------TNKKVGVFPKDKTQGKFINEWD 152 (444)
T ss_dssp EEEEHHHHTTTHHHHTCTTC-SSEEEEEEECSCHHH-HHHHHHHHHHHHHT-------TTSEEEECTTCCCCSHHHHHHH
T ss_pred EEEcCchHHHHhhhhccccC-CccEEEEeccccccc-CHHHHHHHHHHHHh-------cCCEEEEeccccchhHHHHHHH
Confidence 999999887777775 3211 124666654222111 12468899998872 3678999887888899999999
Q ss_pred HHHhc--cCCceeccchhhHhHhhccChhhhhceee
Q 003374 174 DRLQN--SGFQLSDVTNGLSELFAVKDQEEIMNVKK 207 (825)
Q Consensus 174 ~~l~~--~~~e~VDVS~~iS~llavKDe~Ei~~ikk 207 (825)
..|.. .+.+.+|++..|..+.+||++.||..||+
T Consensus 153 ~~l~~~~~~~~~~~~~~~i~~~r~iK~~~Ei~~~r~ 188 (444)
T 3cb6_A 153 SIFEPVKSEFNLVDASLGLAKCLAIKDEQELANIKG 188 (444)
T ss_dssp HHHTTTGGGSEEEECHHHHHHHHHSCCHHHHHHHHH
T ss_pred HHHhhccCCceEeecHHHHHHHHccCCHHHHHHHHH
Confidence 88854 35789999999999999999999999987
No 3
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin, replication, AC chromosomal protein, DNA damage, DNA repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A 3bit_A*
Probab=99.49 E-value=1.2e-13 Score=155.03 Aligned_cols=179 Identities=24% Similarity=0.458 Sum_probs=139.7
Q ss_pred CCcccccCHHHHHHHHHHHHHHHccCCCCCCCCCCEEEEEcCCCCccccchhhhhhhHhhcCCcccceeeEeecCeEEEE
Q 003374 17 GANAYSINLENFSTRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIWLLGYEFPETVMVFMKKQIQFL 96 (825)
Q Consensus 17 ~Ms~v~ID~~~F~~RLk~L~~~Wk~~~~~~~~~~dai~i~~G~~~ed~~Y~KStaLq~WLlGYEFpdTlivftk~~i~~L 96 (825)
.|+++.|+.+.|.+||.+|.+.|++ ...++|+++|..+...+++.|.++.+++.||+||.+|.+++|++++..+++
T Consensus 2 ~m~~~~~~~~~~~~Rl~~Lr~~m~~----~~~giDa~li~~~~~~~~~~y~~~~~~~~yLtGf~~~~~~lvVt~d~~~L~ 77 (467)
T 3biq_A 2 HMEELNIDFDVFKKRIELLYSKYNE----FEGSPNSLLFVLGSSNAENPYQKTTILHNWLLSYEFPATLIALVPGKVIII 77 (467)
T ss_dssp -----CCCHHHHHHHHHHHHHHGGG----STTCCSEEEEEECSCCTTSTTCHHHHHHHHHHSSCCSSEEEEEETTEEEEE
T ss_pred CccccccCHHHHHHHHHHHHHHHHh----hhcCCCEEEEEcCCCCCCCCCccchhhhhHhhCCCCCCEEEEEECCeEEEE
Confidence 3888899999999999999999982 125889999999976677899999999999999999999999999999999
Q ss_pred echhhhhhhhhhhc--cCC-CCccEEEEEee-cCCCCChHHHHHHHHHHHhccCCCCCCCCCeEEEeeCCCCCCchHHHH
Q 003374 97 CSQKKASLLGMVKR--SAK-DAVGADVVIHV-KAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETW 172 (825)
Q Consensus 97 tS~KKa~~Le~l~~--~~~-~~~~Veilvr~-Kd~~~n~~~~fekli~~ik~~~~~~s~~g~kVGvl~Kdk~~G~F~~~W 172 (825)
|...++.++.++.. ... ....++++... .+. ++....++.|.+.++. . +++||+..++.....++..|
T Consensus 78 ~d~~~~~y~~~a~~~~e~~~~~~~v~v~~~~~~~~-~~~~~~~~~L~~~L~~------~-~~~Igv~~~~~~s~~~~~~L 149 (467)
T 3biq_A 78 TSSAKAKHLQKAIDLFKDPESKITLELWQRNNKEP-ELNKKLFDDVIALINS------A-GKTVGIPEKDSYQGKFMTEW 149 (467)
T ss_dssp EEHHHHHHHHHHHGGGCC--CCCEEEEEEECTTCH-HHHHHHHHHHHHHHHH------H-CSEEEECTTCCCCSHHHHHH
T ss_pred ECCcchHHHHHHhhhcccccCCCCeEEEEeccccc-ccchhhHHHHHHHHHh------h-CCEEEEecCcccchhHHHHH
Confidence 99999877777653 110 01246666541 111 1111467888888763 2 56899977778899999999
Q ss_pred HHHHhc----cCCceeccchhhHhHhhccChhhhhceee
Q 003374 173 ADRLQN----SGFQLSDVTNGLSELFAVKDQEEIMNVKK 207 (825)
Q Consensus 173 ~~~l~~----~~~e~VDVS~~iS~llavKDe~Ei~~ikk 207 (825)
.+.|.. .+.+++|++..|..+.+||++.||..||.
T Consensus 150 ~~~l~~~~~~~~~~lv~~~~~i~~lr~iK~~~Ei~~~r~ 188 (467)
T 3biq_A 150 NPVWEAAVKENEFNVIDISLGLSKVWEVKDVNEQAFLSV 188 (467)
T ss_dssp HHHHHHHHHHHTCEEEECHHHHHHHTCSCCHHHHHHHHH
T ss_pred HHHHHhhcccCCceeechHHHHHHHHccCCHHHHHHHHH
Confidence 998854 47899999999999999999999999987
No 4
>3fss_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; 1.43A {Saccharomyces cerevisiae} PDB: 3tw1_A* 3tvv_A* 3gyp_A 3gyo_A 3to1_A
Probab=99.09 E-value=3.9e-10 Score=116.03 Aligned_cols=79 Identities=14% Similarity=0.298 Sum_probs=70.5
Q ss_pred cCc-ccc--eeEeEeeCcccceeccccCceEEecCceeEEEEEeecCCcceeeEEEEEecCCCCeEEEecccCCChHhHH
Q 003374 594 HGV-PHK--ASAFIVPTSSCLVELIETPFLVVTLGEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSSSLDSIK 670 (825)
Q Consensus 594 ~Gv-p~K--s~v~l~Pt~~cLv~l~e~P~~vitl~eIeiV~fERV~~~~knFDmvfvfKd~~~~~~~i~~Ip~~~ld~Ik 670 (825)
.|| ++| ..|+|||+.+|++|....|++++++++|+.|.|+||+ .|||||+++.|+ +..+.|++|++++++.|.
T Consensus 156 ~~Vkc~~kAkeG~LyfL~~~ilFgf~KP~l~i~~~dI~svs~Srv~--~RTFdl~v~~k~--g~e~eFsmIDq~E~~~Id 231 (237)
T 3fss_A 156 FHLQCHRGTKEGTLYFLPDHIIFGFKKPILLLDASDIESITYSSIT--RLTFNASLVTKD--GEKYEFSMIDQTEYAKID 231 (237)
T ss_dssp EEEEEESSSSEEEEEECSSEEEEESSSSCEEEEGGGEEEEEEESCC--SSEEEEEEEETT--SCEEEEEEEEGGGHHHHH
T ss_pred eEEEEEcCCCCeEEEEecCceEEecCCCeEEEEehhEEEEEEEecc--CcEEEEEEEECC--CCeEEEeecCHHHHHHHH
Confidence 555 566 7999999999999963349999999999999999995 799999999996 679999999999999999
Q ss_pred HHhhhc
Q 003374 671 EWLDTT 676 (825)
Q Consensus 671 ~wL~s~ 676 (825)
+|+.++
T Consensus 232 ~fvk~K 237 (237)
T 3fss_A 232 DYVKRK 237 (237)
T ss_dssp HHHHC-
T ss_pred HHHhcC
Confidence 999874
No 5
>2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation, XAA-Pro dipeptida dipeptidase, peptidase D, collagen degradation; 1.82A {Homo sapiens} PDB: 2okn_A
Probab=98.46 E-value=2.5e-08 Score=113.32 Aligned_cols=172 Identities=14% Similarity=0.139 Sum_probs=108.3
Q ss_pred cccCHHHHHHHHHHHHHHHccCCCCCCCCCCEEEEEcCCCC-----ccccch-hhhhhhHhhcCCcccceeeEeec--Ce
Q 003374 21 YSINLENFSTRLKALYSHWNKHKSDYWGSADVLAIATPPAS-----EDLRYL-KSSALNIWLLGYEFPETVMVFMK--KQ 92 (825)
Q Consensus 21 v~ID~~~F~~RLk~L~~~Wk~~~~~~~~~~dai~i~~G~~~-----ed~~Y~-KStaLq~WLlGYEFpdTlivftk--~~ 92 (825)
..|+.+.|.+|+++|++.|.....+ + .++++|+.|... .|..|. ++.+.+.||+||++|++++||.+ ++
T Consensus 17 ~~i~~~e~~~Rr~~l~~~~~~~~~~--~-~~~~~il~~~~~~~~~~~d~~y~frq~s~f~YLtG~~~p~~~~vi~~~~~~ 93 (494)
T 2iw2_A 17 LKVPLALFALNRQRLCERLRKNPAV--Q-AGSIVVLQGGEETQRYCTDTGVLFRQESFFHWAFGVTEPGCYGVIDVDTGK 93 (494)
T ss_dssp CCEETHHHHHHHHHHHHHHHHCTTC--C-TTCEEEEECCCCEESTTSCCEECCCCCHHHHHHHCCCSSSCEEEEETTTCC
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhcc--c-CceEEEEeCCcceeecCCCCCCCccCCcceeeecCCCCCCeEEEEEccCCe
Confidence 4588999999999999999875321 1 333455555433 678888 89999999999999999999965 68
Q ss_pred EEEEechhhhhhhhhhhccCCCCccEEEEEeecCCCCChHHHHHHHHHHHhccCCCCCCCCCeEEEe-eCCCCCCchHHH
Q 003374 93 IQFLCSQKKASLLGMVKRSAKDAVGADVVIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSI-ARETPEGRLLET 171 (825)
Q Consensus 93 i~~LtS~KKa~~Le~l~~~~~~~~~Veilvr~Kd~~~n~~~~fekli~~ik~~~~~~s~~g~kVGvl-~Kdk~~G~F~~~ 171 (825)
.++++..+.... + +-.+ ..++++.+.... +.+....++.|.+.++. ..+++||++ ..+...|.++..
T Consensus 94 ~~L~~~~~~~~~-~-~w~g--~~~~~~~~~~~~--~~~~~~~~~~l~~~L~~------~~~~~i~~~~g~~~~~~~~~~~ 161 (494)
T 2iw2_A 94 STLFVPRLPASH-A-TWMG--KIHSKEHFKEKY--AVDDVQYVDEIASVLTS------QKPSVLLTLRGVNTDSGSVCRE 161 (494)
T ss_dssp EEEEECCCCGGG-T-TTTC--CCCCHHHHHHHH--TCSEEEEGGGHHHHHHH------TCCSCEECCCCBCTTTCCBCCC
T ss_pred EEEEECCCCHHH-h-hhcC--CCCCHHHHHHHh--CCcccccHHHHHHHHHh------cCCCeEEEecCccccccccccH
Confidence 888888776542 1 1111 111211111100 11111223445555553 123468774 556556666544
Q ss_pred HH-HHHhccCCceeccchhhHhHhhccChhhhhceee
Q 003374 172 WA-DRLQNSGFQLSDVTNGLSELFAVKDQEEIMNVKK 207 (825)
Q Consensus 172 W~-~~l~~~~~e~VDVS~~iS~llavKDe~Ei~~ikk 207 (825)
|. ..+.....+.+|++..|..+.+||++.||..||+
T Consensus 162 ~~~~~l~~~~~~~~~~~~~l~~~R~iKs~~EI~~mr~ 198 (494)
T 2iw2_A 162 ASFDGISKFEVNNTILHPEIVECRVFKTDMELEVLRY 198 (494)
T ss_dssp CCCTTGGGSCEECSSHHHHHHHHHHSCCHHHHHHHHH
T ss_pred hhhhhhhhccccchhHHHHHHHHHhcCCHHHHHHHHH
Confidence 42 1122113466788899999999999999999987
No 6
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima}
Probab=98.32 E-value=2.1e-06 Score=92.62 Aligned_cols=143 Identities=12% Similarity=0.161 Sum_probs=103.5
Q ss_pred HHHHHHHHHHccCCCCCCCCCCEEEEEcCCCCccccchhhhhhhHhhcCCcccceeeEeecCeEEEEechhhhhhhhhhh
Q 003374 30 TRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIWLLGYEFPETVMVFMKKQIQFLCSQKKASLLGMVK 109 (825)
Q Consensus 30 ~RLk~L~~~Wk~~~~~~~~~~dai~i~~G~~~ed~~Y~KStaLq~WLlGYEFpdTlivftk~~i~~LtS~KKa~~Le~l~ 109 (825)
.||++|.+.+++ .++|+++|..+. +. +.+++.||+||..|++++|++++..++++...... +..
T Consensus 2 ~Rl~~Lr~~m~~------~~lDa~li~~~~----ni---~~~~~~YLtGf~~~~~~llI~~~~~~L~~d~r~~~---~a~ 65 (359)
T 2zsg_A 2 DRSERLIQLISE------EGIDAFLIMNIE----NS---ARASSVYFSGFTGSFSIILISENTRLLITDSRYTV---QAK 65 (359)
T ss_dssp CCHHHHHHHHHT------TTCCEEEEEEST----TT---THHHHHHHHCCCSSCEEEEEETTEEEEEECTTTHH---HHH
T ss_pred hHHHHHHHHHHH------CCCcEEEEEChh----Hc---ccccCeeEeccCCCCEEEEEECCCCEEEECcccHH---HHH
Confidence 488999999987 478999988774 11 37889999999999999999999988888876433 332
Q ss_pred ccCCCCccEEEEEeecCCCCChHHHHHHHHHHHhccCCCCCCCCCeEEEeeCCCCCCchHHHHHHHHhccCCceeccchh
Q 003374 110 RSAKDAVGADVVIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWADRLQNSGFQLSDVTNG 189 (825)
Q Consensus 110 ~~~~~~~~Veilvr~Kd~~~n~~~~fekli~~ik~~~~~~s~~g~kVGvl~Kdk~~G~F~~~W~~~l~~~~~e~VDVS~~ 189 (825)
.. ..++++.... + ..++.|.+.++. ..+++||+-.. ..+..+...|.+.+. +.+.+|++..
T Consensus 66 ~~----~~~~v~~~~~---~---~~~~~l~~~L~~------~~~~~vgvd~~-~~~~~~~~~l~~~l~--~~~~v~~~~~ 126 (359)
T 2zsg_A 66 QE----TDFEVREVKG---G---DFIDVLKKTVND------LKIKTIALEEE-RVSLSLFRRISSAFG--DRKFIGIDDE 126 (359)
T ss_dssp HH----CCSEEEEC---------CCHHHHHHHHHH------TTCCEEEECGG-GSBHHHHHHHHHHTT--TCEEEECHHH
T ss_pred hC----CCCEEEEecC---c---chHHHHHHHHHh------cCCCEEEEeCC-cCCHHHHHHHHhhCC--CcEEEEChhh
Confidence 21 1245554311 1 134566666663 23568998654 556666777766553 3789999999
Q ss_pred hHhHhhccChhhhhceee
Q 003374 190 LSELFAVKDQEEIMNVKK 207 (825)
Q Consensus 190 iS~llavKDe~Ei~~ikk 207 (825)
|..+.+||++.||..||+
T Consensus 127 i~~lr~iK~~~Ei~~~r~ 144 (359)
T 2zsg_A 127 VKQMRMVKDEGEIEKIKQ 144 (359)
T ss_dssp HHHHHHBCCHHHHHHHHH
T ss_pred hhhhhcCCCHHHHHHHHH
Confidence 999999999999999987
No 7
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for structural genomics O infectious diseases, aminopeptidase, viral protein; 1.97A {Bacillus anthracis}
Probab=98.20 E-value=1.7e-06 Score=93.64 Aligned_cols=140 Identities=16% Similarity=0.235 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCCEEEEEcCCCCccccchhhhhhhHhhcCCcccceeeEeecCeEEEEechhhhhhhh
Q 003374 27 NFSTRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIWLLGYEFPETVMVFMKKQIQFLCSQKKASLLG 106 (825)
Q Consensus 27 ~F~~RLk~L~~~Wk~~~~~~~~~~dai~i~~G~~~ed~~Y~KStaLq~WLlGYEFpdTlivftk~~i~~LtS~KKa~~Le 106 (825)
.|..||.+|.+.+++ .++|+++|..+. + ..||+||..+++++|+|++..+++|..+. ++
T Consensus 2 ~~~~Rl~~lr~~m~~------~giDa~lI~~~~----n--------i~YLtGf~g~~~~llvt~~~~~l~~d~r~---~~ 60 (356)
T 3q6d_A 2 NAMEKIERLRSAFDE------AGIDGILLTNEH----S--------RRYMANFTGTAGVVLISKKRAQFITDFRY---VE 60 (356)
T ss_dssp CHHHHHHHHHTTHHH------HTCSEEEECCHH----H--------HHHHHCCCSSSCEEEEESSCEEEEECGGG---HH
T ss_pred cHHHHHHHHHHHHHH------cCCCEEEECChh----h--------ceEccCCCCCCeEEEEECCCeEEEEChhh---HH
Confidence 588999999999987 478998887642 1 48999999999999999999999987653 33
Q ss_pred hhhccCCCCccEEEEEeecCCCCChHHHHHHHHHHHhccCCCCCCCCCeEEEeeCCCCCCchHHHHHHHHhccCCceecc
Q 003374 107 MVKRSAKDAVGADVVIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWADRLQNSGFQLSDV 186 (825)
Q Consensus 107 ~l~~~~~~~~~Veilvr~Kd~~~n~~~~fekli~~ik~~~~~~s~~g~kVGvl~Kdk~~G~F~~~W~~~l~~~~~e~VDV 186 (825)
+..... ..++++... + ..++.|.+.++. ..+++||+-.. ..+..+...|.+.+. + +.+|+
T Consensus 61 ~a~~~~---~~~~v~~~~----~---~~~~~l~~~l~~------~~~~~igve~~-~~~~~~~~~l~~~~~--~-~~~~~ 120 (356)
T 3q6d_A 61 QASKQA---VGYEIVQHA----G---LIIDEVAKQVKE------LGIQKLGFEQD-TLTYSSYSAHKEAID--A-EFIPT 120 (356)
T ss_dssp HHHHHS---TTSEEEECS----S---CHHHHHHHHHHH------HTCSEEEEETT-TSBHHHHHHHHHHCC--S-EEEEE
T ss_pred HHHhhC---CCCEEEEeC----C---CHHHHHHHHHHh------cCCceEEEcCc-cCCHHHHHHHhhhcc--c-ceecc
Confidence 443221 124555431 1 345666666663 23578997543 567777777777654 3 89999
Q ss_pred chhhHhHhhccChhhhhceee
Q 003374 187 TNGLSELFAVKDQEEIMNVKK 207 (825)
Q Consensus 187 S~~iS~llavKDe~Ei~~ikk 207 (825)
+..|..+-++|++.||..||.
T Consensus 121 ~~~~~~~R~iK~~~Ei~~~r~ 141 (356)
T 3q6d_A 121 SGLVEKLRLIKTDSEIKILKE 141 (356)
T ss_dssp CSHHHHHHTSCCHHHHHHHHH
T ss_pred hhhhhhhccCCCHHHHHHHHH
Confidence 999999999999999999987
No 8
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A
Probab=97.75 E-value=6.5e-05 Score=81.63 Aligned_cols=136 Identities=13% Similarity=0.126 Sum_probs=92.0
Q ss_pred HHHHHHHHHHccCCCCCCCCCCEEEEEcCCCCccccchhhhhhhHhhcCCccc-----ceeeEeecCe-EEEEechhhhh
Q 003374 30 TRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIWLLGYEFP-----ETVMVFMKKQ-IQFLCSQKKAS 103 (825)
Q Consensus 30 ~RLk~L~~~Wk~~~~~~~~~~dai~i~~G~~~ed~~Y~KStaLq~WLlGYEFp-----dTlivftk~~-i~~LtS~KKa~ 103 (825)
+|+++|.+.++. .++|+++|..+. =..||+||..+ .+++|++++. .+++|...+..
T Consensus 1 ~R~~~l~~~m~~------~~~d~~li~~~~------------n~~yltG~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~ 62 (356)
T 1wn1_A 1 MRLEKFIHLLGE------RGFDGALISPGT------------NLYYLTGLRLHEVGERLAILAVSAEGDYRFLAPSLYEN 62 (356)
T ss_dssp CHHHHHHHHHHH------TTCSEEEECSSH------------HHHHHHCCCCSCCTTSCCEEEEETTSCEEEEEEGGGTT
T ss_pred CHHHHHHHHHHH------CCCcEEEECCCc------------cceeecCCcCCCCCCceEEEEEeCCCcEEEEECcccHH
Confidence 388999999987 478898876542 23899999743 5778888875 88888887654
Q ss_pred hhhhhhccCCCCccEEEEEeecCCCCChHHHHHHHHHHHhccCCCCCCCCCeEEEeeCCCCCCchHHHHHHHHhccCCce
Q 003374 104 LLGMVKRSAKDAVGADVVIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWADRLQNSGFQL 183 (825)
Q Consensus 104 ~Le~l~~~~~~~~~Veilvr~Kd~~~n~~~~fekli~~ik~~~~~~s~~g~kVGvl~Kdk~~G~F~~~W~~~l~~~~~e~ 183 (825)
.+.. ++++... + .. ..++.|.+.++.. ...+++||+- +.....++..|.+. .+.+.
T Consensus 63 ---~~~~-------~~v~~~~-~-~~---~~~~~l~~~l~~~----~~~~~~i~~~--~~~~~~~~~~l~~~---~~~~~ 118 (356)
T 1wn1_A 63 ---VVNN-------FPATFWH-D-GE---NPYAKLREILEEL----GISKGRILIE--DTMRADWLIGIMKL---GKFTF 118 (356)
T ss_dssp ---TTTT-------SCEEEEC-T-TS---CHHHHHHHHHHHT----TCSSEEEEEC--TTSBHHHHHHHGGG---SCEEE
T ss_pred ---HhhC-------CeEEEEc-C-CC---CHHHHHHHHHHHh----cCCCCEEEEe--CCcCHHHHHHHHcC---CCCeE
Confidence 2321 2333331 1 11 2356666666531 0135689986 44555555555432 35688
Q ss_pred eccchhhHhHhhccChhhhhceee
Q 003374 184 SDVTNGLSELFAVKDQEEIMNVKK 207 (825)
Q Consensus 184 VDVS~~iS~llavKDe~Ei~~ikk 207 (825)
+|++..|..+.++|++.||..||.
T Consensus 119 ~~~~~~i~~~R~iK~~~Ei~~~r~ 142 (356)
T 1wn1_A 119 QPLSSLIKELRMIKDKEEVKMMEH 142 (356)
T ss_dssp EETHHHHHHHHTSCCHHHHHHHHH
T ss_pred EEcHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999987
No 9
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken structural genomics/PR initiative, RSGI, hydrolase; 1.70A {Pyrococcus horikoshii} PDB: 1pv9_A
Probab=97.67 E-value=0.00011 Score=79.58 Aligned_cols=133 Identities=14% Similarity=0.178 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCCEEEEEcCCCCccccchhhhhhhHhhcCCcccce-e-eEeecCeEEEEechhhhhhh
Q 003374 28 FSTRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIWLLGYEFPET-V-MVFMKKQIQFLCSQKKASLL 105 (825)
Q Consensus 28 F~~RLk~L~~~Wk~~~~~~~~~~dai~i~~G~~~ed~~Y~KStaLq~WLlGYEFpdT-l-ivftk~~i~~LtS~KKa~~L 105 (825)
|..|+++|.+.+++ .++|+++|..+. =..||+||..++. . ++++++..++++..++ ...
T Consensus 4 m~~R~~~l~~~m~~------~~~da~li~~~~------------n~~yltg~~~~~~~~~llv~~~~~~l~~~~~~-~~~ 64 (351)
T 1wy2_A 4 MNEKVKKIIEFMDK------NSIDAVLIAKNP------------NVYYISGASPLAGGYILITGESATLYVPELEY-EMA 64 (351)
T ss_dssp CCHHHHHHHHHHHH------TTCSEEEECSHH------------HHHHHHSCCCSSCCEEEEETTEEEEEEEHHHH-HHH
T ss_pred HHHHHHHHHHHHHH------CCCCEEEECCCC------------CceEecCCCCCCCcEEEEEECCCcEEEECchH-HHH
Confidence 35899999999987 478898876442 2379999999887 5 7778888888888776 322
Q ss_pred hhhhccCCCCccEEEEEeecCCCCChHHHHHHHHHHHhccCCCCCCCCCeEEEeeCCCCCCchHHHHHHHHhccCCceec
Q 003374 106 GMVKRSAKDAVGADVVIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWADRLQNSGFQLSD 185 (825)
Q Consensus 106 e~l~~~~~~~~~Veilvr~Kd~~~n~~~~fekli~~ik~~~~~~s~~g~kVGvl~Kdk~~G~F~~~W~~~l~~~~~e~VD 185 (825)
+.. ..++++... . ++.+.+.++ ..++||+- +..+..+.+.|.+.+. ..+.+|
T Consensus 65 ~~~-------~~~~v~~~~----~-----~~~l~~~l~--------~~~~ig~e--~~~~~~~~~~l~~~~~--~~~~~~ 116 (351)
T 1wy2_A 65 KEE-------SNIPVEKFK----K-----MDEFYKALE--------GIKSLGIE--SSLPYGFIEELKKKAN--IKEFKK 116 (351)
T ss_dssp HHH-------CSSCEEEES----S-----HHHHHHHHT--------TCSEEEEC--TTCBHHHHHHHHHHSC--CCEEEE
T ss_pred hhc-------CCCeEEEeC----c-----HHHHHHHHc--------cCCEEEEc--CcCCHHHHHHHHhhCC--CCeEEE
Confidence 211 123343331 1 556666665 13589987 5667777777776653 348999
Q ss_pred cchhhHhHhhccChhhhhceee
Q 003374 186 VTNGLSELFAVKDQEEIMNVKK 207 (825)
Q Consensus 186 VS~~iS~llavKDe~Ei~~ikk 207 (825)
++..|..+.++|++.||+.||+
T Consensus 117 ~~~~i~~~r~iK~~~Ei~~~r~ 138 (351)
T 1wy2_A 117 VDDVIRDMRIIKSEKEIKIIEK 138 (351)
T ss_dssp CHHHHHHHHTSCCHHHHHHHHH
T ss_pred cHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999999987
No 10
>4fkc_A XAA-Pro aminopeptidase; PITA-bread structure, prolidase, hydrolase; 2.60A {Thermococcus sibiricus}
Probab=97.61 E-value=0.00012 Score=79.58 Aligned_cols=143 Identities=17% Similarity=0.235 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCCEEEEEcCCCCccccchhhhhhhHhhcCCcccce-----eeEeecC-eEEEEech
Q 003374 26 ENFSTRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIWLLGYEFPET-----VMVFMKK-QIQFLCSQ 99 (825)
Q Consensus 26 ~~F~~RLk~L~~~Wk~~~~~~~~~~dai~i~~G~~~ed~~Y~KStaLq~WLlGYEFpdT-----livftk~-~i~~LtS~ 99 (825)
-.|.+||++|.+..++ .++|+++|..+. | ..||+||..+++ +++++.+ .+++++..
T Consensus 13 ~Ey~~Rl~rlr~~m~~------~glDalli~~~~----n--------i~YLTG~~~~~~~~~~~~lvv~~~g~~~~~~~~ 74 (377)
T 4fkc_A 13 MDYKRRIHKFQAHFGK------KGFEGALVAPGS----N--------FYYLTGFNPLGTLERLFVLILPSEGLLTAIAPR 74 (377)
T ss_dssp SCHHHHHHHHHHHHHH------TTCCEEEECSSH----H--------HHHHHSCCCCCCSSSCCEEEEESSSCCEEEEEG
T ss_pred HHHHHHHHHHHHHHHH------CCCCEEEECCCh----h--------heeecCCCCCCCCcceEEEEEcCCCcEEEEecc
Confidence 3489999999999988 478898875442 2 369999988876 4555554 55666554
Q ss_pred hhhhhhhhhhccCCCCccEEEEEeecCCCCChHHHHHHHHHHHhccCCCCCCCCCeEEEeeCCCCCCchHHHHHHHHhcc
Q 003374 100 KKASLLGMVKRSAKDAVGADVVIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWADRLQNS 179 (825)
Q Consensus 100 KKa~~Le~l~~~~~~~~~Veilvr~Kd~~~n~~~~fekli~~ik~~~~~~s~~g~kVGvl~Kdk~~G~F~~~W~~~l~~~ 179 (825)
-....++.+ +.+++... + ..+. +..+.+.++.. ...+++||+= +..+-.+...+.+.+ .
T Consensus 75 ~~~~~~~~~--------~~~~~~~~-~-~~~~---~~~~~~~l~~~----~~~~~~i~~d--~~~~~~~~~~l~~~~--~ 133 (377)
T 4fkc_A 75 LYEKELEEF--------NGEVVLWS-D-SENP---YKIFATKIKET----FKEGEKLLID--DTMPVGVFLKAKDIF--D 133 (377)
T ss_dssp GGHHHHTTC--------SSEEEEEC-T-TSCH---HHHHHHHHHHH----SCSSCEEEEC--TTSCHHHHHHTHHHH--T
T ss_pred chHHHHHhc--------CCCEEEec-c-ccCH---HHHHHHHHHHh----hhccceeeee--ccccHHHHHHHHhhC--C
Confidence 433323322 12333332 1 2222 33344444321 1356788873 233333333344433 2
Q ss_pred CCceeccchhhHhHhhccChhhhhceee
Q 003374 180 GFQLSDVTNGLSELFAVKDQEEIMNVKK 207 (825)
Q Consensus 180 ~~e~VDVS~~iS~llavKDe~Ei~~ikk 207 (825)
+.+.+|++..|..+-+||++.||+.||+
T Consensus 134 ~~~~~d~~~~i~~lR~iKs~~EI~~~r~ 161 (377)
T 4fkc_A 134 KYSLHPISPVISELREIKDKDEIKAHKK 161 (377)
T ss_dssp TSEEEESHHHHHHHHTSCCHHHHHHHHH
T ss_pred CCeEEEhHHHHHHHHhcCCHHHHHHHHH
Confidence 6889999999999999999999999987
No 11
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich; 2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Probab=97.43 E-value=0.00047 Score=75.51 Aligned_cols=146 Identities=13% Similarity=0.117 Sum_probs=96.8
Q ss_pred ccCHHHHHHHHHHHHHHHccCCCCCCCCCCEEEEEcCCCCccccchhhhhhhHhhcCC-----cccceeeEeecCeEEEE
Q 003374 22 SINLENFSTRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIWLLGY-----EFPETVMVFMKKQIQFL 96 (825)
Q Consensus 22 ~ID~~~F~~RLk~L~~~Wk~~~~~~~~~~dai~i~~G~~~ed~~Y~KStaLq~WLlGY-----EFpdTlivftk~~i~~L 96 (825)
.|..+.|..||++|.+.+++ .++|+++|..+. + -.||+|+ +.|.+++| +++..+++
T Consensus 18 ~~~~~e~~~Rl~~Lr~~m~~------~~lDa~li~~~~---n---------i~yltgf~~s~~~~p~~llV-~~~~~~l~ 78 (402)
T 1kp0_A 18 PFSZAEMTRRZBRLRAWMAK------SBIDAVLFTSYH---N---------INYYSGWLYCYFGRKYAZVI-BZVKAVTI 78 (402)
T ss_dssp SSCHHHHHHHHHHHHHHHHH------HTCSEEEECSHH---H---------HHHHHSCCCCCTTCCCEEEE-CSSCEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHH------CCCCEEEEcCCC---C---------ceEecCCCCCCCCceEEEEE-eCCCCEEE
Confidence 37889999999999999987 478898887542 2 3455554 55777655 55667777
Q ss_pred echhhhhhhhhhhccCCCCccEEEEEeecCCCCChHHHHHHHHHHHhccCCCCCCCCCeEEEeeCCCCCCchHHHHHHHH
Q 003374 97 CSQKKASLLGMVKRSAKDAVGADVVIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWADRL 176 (825)
Q Consensus 97 tS~KKa~~Le~l~~~~~~~~~Veilvr~Kd~~~n~~~~fekli~~ik~~~~~~s~~g~kVGvl~Kdk~~G~F~~~W~~~l 176 (825)
|...+... ..... ....+.... -.+. ..++.|.+.++ .+++||+-.. ..+..+...|.+.+
T Consensus 79 ~~~~~~~~--a~~~~----~~~~v~~~~---~~~~-~~~~~l~~~l~--------~~~~igvd~~-~~~~~~~~~l~~~l 139 (402)
T 1kp0_A 79 SKGIDGGM--PWRRS----FGBNIVYTD---WKRD-NFYSAVKKLVK--------GAKZIGIEHD-HVTLBHRRZLZKAL 139 (402)
T ss_dssp EEGGGTTH--HHHHC----SSEEEEECS---SSTT-HHHHHHHHHHT--------TCSEEEECTT-TCBHHHHHHHHHHS
T ss_pred eccchhhh--hHHhc----cCcceEecc---cccc-CHHHHHHHHhc--------cCCEEEEecC-CCCHHHHHHHHHhC
Confidence 77665431 12211 112233221 1122 45666766664 2568998543 44555666666654
Q ss_pred hccCCceeccchhhHhHhhccChhhhhceee
Q 003374 177 QNSGFQLSDVTNGLSELFAVKDQEEIMNVKK 207 (825)
Q Consensus 177 ~~~~~e~VDVS~~iS~llavKDe~Ei~~ikk 207 (825)
. +.+.+|++..|..+-+||++.||..||.
T Consensus 140 ~--~~~~v~~~~~i~~lR~iKs~~Ei~~~r~ 168 (402)
T 1kp0_A 140 P--GTEFVDVGZPVMWZRVIKSSEEZBLIRZ 168 (402)
T ss_dssp T--TCEEEECHHHHHHHHTSCCHHHHHHHHH
T ss_pred C--CCEEEECHHHHHHHHHcCCHHHHHHHHH
Confidence 3 6789999999999999999999999987
No 12
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 2.20A {Mycobacterium ulcerans}
Probab=97.27 E-value=0.0012 Score=72.57 Aligned_cols=152 Identities=20% Similarity=0.163 Sum_probs=97.7
Q ss_pred CcccccCHHHHHHHHHHHHHHHccCCCCCCCCCCEEEEEcCCCCccccchhhhhhhHhhcCCcccc----eeeEeecC-e
Q 003374 18 ANAYSINLENFSTRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIWLLGYEFPE----TVMVFMKK-Q 92 (825)
Q Consensus 18 Ms~v~ID~~~F~~RLk~L~~~Wk~~~~~~~~~~dai~i~~G~~~ed~~Y~KStaLq~WLlGYEFpd----Tlivftk~-~ 92 (825)
|-...+..+.|..||.+|...-++ .++|+++|..+. | ..||+||.-.. +.+|++.+ .
T Consensus 5 ~~~~~~~~~e~~~R~~~l~~~m~~------~g~da~li~~~~----n--------i~YltG~~~~~~~r~~~l~v~~~g~ 66 (378)
T 4ege_A 5 MDSGRFDTAVYARRLAAAAAATEQ------AGLAGLVITPGY----D--------LRYLIGSRADTFERLTALVLPASGV 66 (378)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHH------TTCSEEEECSSH----H--------HHHHHCCCCCCSSSCCEEEEESSSC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHH------cCCCEEEECCcc----h--------hHHhhCCCCCCCcceEEEEEEeCCc
Confidence 445668889999999999998887 478898776432 2 25999987643 45666665 6
Q ss_pred EEEEechhhhhhhhhhhccCCCCccEEEEEeecCCCCChHHHHHHHHHHHhccCCCCCCCCCeEEEeeCCCCCCchHHHH
Q 003374 93 IQFLCSQKKASLLGMVKRSAKDAVGADVVIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETW 172 (825)
Q Consensus 93 i~~LtS~KKa~~Le~l~~~~~~~~~Veilvr~Kd~~~n~~~~fekli~~ik~~~~~~s~~g~kVGvl~Kdk~~G~F~~~W 172 (825)
.+++|...-.. .+....-....+++..-. + .. ..+..+.+.+. ...++||+= +..+-.+...+
T Consensus 67 ~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~-~-~~---~~~~~l~~~l~-------~~~~~igve--~~~~~~~~~~l 129 (378)
T 4ege_A 67 PTIVLPRLELA---SLKESAASDLGVCVRDWV-D-GD---DPYQLVAVALG-------GAPAATAVT--DSMPALHLLPL 129 (378)
T ss_dssp CEEEEEGGGGG---GGGTSSTTTTTCEEEEEC-T-TS---CHHHHHHHHTT-------SSSCCEEEC--TTCCHHHHHHH
T ss_pred EEEEEChhhHH---HHHhcccCCCCeEEEEec-C-CC---CHHHHHHHHHh-------cCCCEEEEc--CCCcHHHHHHH
Confidence 77777543332 222110001224444331 1 11 23566666665 223579986 34444455556
Q ss_pred HHHHhccCCceeccchhhHhHhhccChhhhhceee
Q 003374 173 ADRLQNSGFQLSDVTNGLSELFAVKDQEEIMNVKK 207 (825)
Q Consensus 173 ~~~l~~~~~e~VDVS~~iS~llavKDe~Ei~~ikk 207 (825)
.+.| +.+.+|++..|..+-++|++.||..||.
T Consensus 130 ~~~~---~~~~~~~~~~i~~~R~iKs~~Ei~~~r~ 161 (378)
T 4ege_A 130 ADAL---GVLPVLATDVLRQLRMVKEAAEVDALAK 161 (378)
T ss_dssp HHHH---TSCCEESHHHHHHHHTBCCHHHHHHHHH
T ss_pred HHHc---CCeEEEcHHHHHHHHHcCCHHHHHHHHH
Confidence 5555 6899999999999999999999999987
No 13
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific enzyme, aminopeptidas manganese enzyme, protease, manganese; HET: CSO; 1.56A {Escherichia coli} SCOP: c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A* 1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A* 2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A* 2bwu_A* 2bww_A* ...
Probab=96.03 E-value=0.012 Score=65.87 Aligned_cols=159 Identities=18% Similarity=0.232 Sum_probs=92.5
Q ss_pred CHHHHHHHHHHHHHHHccCCCCCCCCCCEEEEEcCC---CCccccch-hhhhhhHhhcCCcccceeeEeec-----CeEE
Q 003374 24 NLENFSTRLKALYSHWNKHKSDYWGSADVLAIATPP---ASEDLRYL-KSSALNIWLLGYEFPETVMVFMK-----KQIQ 94 (825)
Q Consensus 24 D~~~F~~RLk~L~~~Wk~~~~~~~~~~dai~i~~G~---~~ed~~Y~-KStaLq~WLlGYEFpdTlivftk-----~~i~ 94 (825)
..+.|..|+++|.+.-+.. + ++ +|.++. ...|.+|. .+.+=..||+||.-|+.++|+++ ++.+
T Consensus 4 ~~~e~~~R~~~l~~~m~~~------~-~~-ll~~~~~~~r~~D~~y~frq~~n~~YltG~~~~~~~lvi~~~~~~~~~~~ 75 (440)
T 2v3z_A 4 SRQEFQRRRQALVEQMQPG------S-AA-LIFAAPEVTRSADSEYPYRQNSDFWYFTGFNEPEAVLVLIKSDDTHNHSV 75 (440)
T ss_dssp CHHHHHHHHHHHHHHSCSS------E-EE-EEECCCCCEEETTEECCCCCCHHHHHHHCCCCSSCEEEEEECSSSCEEEE
T ss_pred CHHHHHHHHHHHHHhcccC------C-EE-EEECCCccccCCCCCCcccCCCCEEEecCCCCCCEEEEEEecCCCCceEE
Confidence 5678999999999887652 2 33 344443 12344553 33455689999999998888876 3566
Q ss_pred EEechhhhhhhhhh-hcc------CCCCccEEEEEeecCCCCChHHHHHHHHHHHhccCCCCCCCCCeEEEeeCC-CCCC
Q 003374 95 FLCSQKKASLLGMV-KRS------AKDAVGADVVIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARE-TPEG 166 (825)
Q Consensus 95 ~LtS~KKa~~Le~l-~~~------~~~~~~Veilvr~Kd~~~n~~~~fekli~~ik~~~~~~s~~g~kVGvl~Kd-k~~G 166 (825)
+++...+... .+ .+. +.....++.+ +. - ..+.+++..+- ...++||.-... ....
T Consensus 76 Lf~~~~~~~~--~~w~~~~~~~~~~~~~~~~~~~-~~------~-~~~~~~l~~~~-------~~~~~i~~~~~~~~~~~ 138 (440)
T 2v3z_A 76 LFNRVRDLTA--EIWFGRRLGQDAAPEKLGVDRA-LA------F-SEINQQLYQLL-------NGLDVVYHAQGEYAYAD 138 (440)
T ss_dssp EEECCCCHHH--HHHHCCCCHHHHHHHHHTCSEE-EE------G-GGHHHHHHHHH-------TTCSEEECCTTSCHHHH
T ss_pred EEecCCCccc--ceecCCCCCHHHHHHhcCCCEE-ee------H-HHHHHHHHHHH-------cCCCEEEEeCCcccchh
Confidence 6666554321 11 000 0000112111 21 1 23445554443 124578753321 1122
Q ss_pred chHHHHHHHHhcc-------CCceeccchhhHhHhhccChhhhhceee
Q 003374 167 RLLETWADRLQNS-------GFQLSDVTNGLSELFAVKDQEEIMNVKK 207 (825)
Q Consensus 167 ~F~~~W~~~l~~~-------~~e~VDVS~~iS~llavKDe~Ei~~ikk 207 (825)
.+...|...+.+. +.+.+|++..|..+.+||++.||..||+
T Consensus 139 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~R~iKs~~Ei~~~r~ 186 (440)
T 2v3z_A 139 VIVNSALEKLRKGSRQNLTAPATMIDWRPVVHEMRLFKSPEEIAVLRR 186 (440)
T ss_dssp HHHHHHHHHHHTCGGGTCCCCSEEECCHHHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccccCCcceeeeHHHHHHHHHhcCCHHHHHHHHH
Confidence 3345566655332 3578999999999999999999999987
No 14
>3il0_A Aminopeptidase P; XAA-Pro aminopeptidase; structural genomics MCSG, protein structure initiative, midwest center for STRU genomics; HET: GOL; 2.20A {Streptococcus thermophilus}
Probab=95.54 E-value=0.061 Score=49.21 Aligned_cols=128 Identities=18% Similarity=0.217 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCCEEEEEcCCCCccccchhhhhhhHhhcCCcccceeeEeecCeEEEEechhhhhhhhh
Q 003374 28 FSTRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIWLLGYEFPETVMVFMKKQIQFLCSQKKASLLGM 107 (825)
Q Consensus 28 F~~RLk~L~~~Wk~~~~~~~~~~dai~i~~G~~~ed~~Y~KStaLq~WLlGYEFpdTlivftk~~i~~LtS~KKa~~Le~ 107 (825)
|..||.+|...-++ .++|+++|..+. + -.||.||.-.+..+|+|++..+++|...-.. +
T Consensus 4 ~~~Rl~~lr~~m~~------~~~da~li~~~~----n--------i~YltGf~~~~~~llv~~~~~~l~~d~r~~~---~ 62 (131)
T 3il0_A 4 MQRRLERFDAKLVQ------SGLDALLVTGQN----N--------IYYLTDFWGTNATVFITKNRRLFLTDSRYTL---I 62 (131)
T ss_dssp GGGHHHHHHHHHHH------HTCSEEEECSHH----H--------HHHHHSCCCSSEEEEEESSCEEEEECTTSHH---H
T ss_pred HHHHHHHHHHHHHH------cCCCEEEEeccc----c--------cEEEeCcccCCeEEEEECCCCEEEECchhHH---H
Confidence 45799999888876 468898776642 1 3699999888888899999888888766433 3
Q ss_pred hhccCCCCccEEEEEeecCCCCChHHHHHHHHHHHhccCCCCCCCCCeEEEeeCCCCCCchHHHHHHHHhccCCceeccc
Q 003374 108 VKRSAKDAVGADVVIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWADRLQNSGFQLSDVT 187 (825)
Q Consensus 108 l~~~~~~~~~Veilvr~Kd~~~n~~~~fekli~~ik~~~~~~s~~g~kVGvl~Kdk~~G~F~~~W~~~l~~~~~e~VDVS 187 (825)
..... ..++|+.. + ..++.|.+.++. ...++||+=.. .+-.+...+.+.+ .+++.||++
T Consensus 63 a~~~~---~~~~v~~~-----~---~~~~~l~~~l~~------~~~~~ig~e~~--~~~~~~~~L~~~~--~~~~~v~~~ 121 (131)
T 3il0_A 63 AKQSV---HGFDIIES-----K---DPLKDIVKFVEV------DKLETIGFDNQ--VSFAYYQALQAIF--EGYTLSPQT 121 (131)
T ss_dssp HHHHC---CSSEEEEC-----S---CHHHHHHHHHHH------TTCCEEEEETT--SCHHHHHHHHHHT--TTSEEEEES
T ss_pred HHHhC---CCcEEEEe-----C---CHHHHHHHHHHh------cCCCEEEEcCC--CCHHHHHHHHhhc--CCCEEEECc
Confidence 33221 12445433 1 235566666663 22267886544 5444555555544 368899999
Q ss_pred hhhHhHhhcc
Q 003374 188 NGLSELFAVK 197 (825)
Q Consensus 188 ~~iS~llavK 197 (825)
..|..+=+||
T Consensus 122 ~~v~~lR~iK 131 (131)
T 3il0_A 122 NFMEELRMIK 131 (131)
T ss_dssp SHHHHHHC--
T ss_pred hHHHHhccCC
Confidence 8887777766
No 15
>4b28_A Metallopeptidase, family M24, putative; lyase, imethylsulfonioproionate, acrylate, dimethylsulfide; 2.15A {Roseobacter denitrificans och 114}
Probab=95.52 E-value=0.014 Score=66.05 Aligned_cols=148 Identities=14% Similarity=0.097 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCCEEEEEcCCCCccccchhhhhhhHhhcCCcc--------cceeeEeecCeEEEEe
Q 003374 26 ENFSTRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIWLLGYEF--------PETVMVFMKKQIQFLC 97 (825)
Q Consensus 26 ~~F~~RLk~L~~~Wk~~~~~~~~~~dai~i~~G~~~ed~~Y~KStaLq~WLlGYEF--------pdTlivftk~~i~~Lt 97 (825)
..|..||.+|...-++ .++|+++|..+. . -.||+||.- |...+|++.+.-.+++
T Consensus 77 ~~~~~Rl~rlr~~m~~------~glDalli~~~~-----------n-i~YlTGf~g~~~~~~~~~~~~llV~~dg~~~l~ 138 (470)
T 4b28_A 77 AMRRFRHRRLTDHVVA------RGYAGLLMFDPL-----------N-IRYATDSTNMQLWNTHNPFRATLLCADGYMVMW 138 (470)
T ss_dssp HHHHHHHHHHHHHHHH------TTCSEEEECSHH-----------H-HHHHHCCCSSHHHHHHSCCCEEEEETTSCEEEE
T ss_pred HHHHHHHHHHHHHHHH------cCCCEEEEcCCC-----------c-ceeecCCCCCcccccCCCCEEEEEECCCCEEEE
Confidence 4577899999999887 478897776652 1 368888863 4556667776555555
Q ss_pred chhhhhhhhhhhccCCCCccEEEEEee----cCCCCC----hHHHHHHHHHHHhccCCCCCCCCCeEEEeeCCCCCCchH
Q 003374 98 SQKKASLLGMVKRSAKDAVGADVVIHV----KAKTDD----GVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLL 169 (825)
Q Consensus 98 S~KKa~~Le~l~~~~~~~~~Veilvr~----Kd~~~n----~~~~fekli~~ik~~~~~~s~~g~kVGvl~Kdk~~G~F~ 169 (825)
-.+.+..|....... -++.... -+.... .....+.|.+.|++. ...+++||+ |.. .+
T Consensus 139 d~r~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~~igv---e~~---~~ 203 (470)
T 4b28_A 139 DYKNSPFLSEFNPLV-----REQRAGADLFYFDRGDKVDVAADVFANEVRILLRDH----APGLRRLAV---DKV---ML 203 (470)
T ss_dssp CCTTCGGGGTTCTTS-----CEEECCCCCSHHHHGGGHHHHHHHHHHHHHHHHHHH----STTCCEEEE---SSC---CH
T ss_pred ecchhhhhhhhhhHH-----HHHHhcCCeeeeccCccccccchhHHHHHHHHHHHh----CccCceeee---Ccc---hH
Confidence 555455453221100 0111000 000000 012334455555531 123578997 221 23
Q ss_pred HHHHHHHhccCCceeccchhhHhHhhccChhhhhceee
Q 003374 170 ETWADRLQNSGFQLSDVTNGLSELFAVKDQEEIMNVKK 207 (825)
Q Consensus 170 ~~W~~~l~~~~~e~VDVS~~iS~llavKDe~Ei~~ikk 207 (825)
.. ...|.+.++++||++..|..+-+||++.||..||+
T Consensus 204 ~~-~~~L~~~~~~~vd~~~~v~~lR~iKs~~EI~~mr~ 240 (470)
T 4b28_A 204 HG-LRALQAQGFEIMDGEEVTEKARSVKGPDEIRAMRC 240 (470)
T ss_dssp HH-HHHHHHTTCEEEEHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HH-HHHHHcCCCEEEEcHHHHHHHHhCCCHHHHHHHHH
Confidence 33 33455568999999999999999999999999987
No 16
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center for structural genomics of infectious DISE; HET: SO4; 2.89A {Bacillus anthracis}
Probab=95.41 E-value=0.062 Score=60.10 Aligned_cols=159 Identities=14% Similarity=0.156 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHHHHHHccCCCCCCCCCCEEEEEcCCC---Cccccch-hhhhhhHhhcCCcccceeeEeec-----CeEE
Q 003374 24 NLENFSTRLKALYSHWNKHKSDYWGSADVLAIATPPA---SEDLRYL-KSSALNIWLLGYEFPETVMVFMK-----KQIQ 94 (825)
Q Consensus 24 D~~~F~~RLk~L~~~Wk~~~~~~~~~~dai~i~~G~~---~ed~~Y~-KStaLq~WLlGYEFpdTlivftk-----~~i~ 94 (825)
+.+.|.+|-++|.+.-... ..++|..|.. +.|..|. .+.+=..||+|+.-|+.++|+++ +.+.
T Consensus 2 ~~~~~~~RR~~l~~~l~~~--------~~~i~~~~~~~~~~~d~~~~frq~s~f~YltG~~~~~~~~v~~~~~~~~~~~l 73 (427)
T 3ig4_A 2 KSKFFAQNRERLVNTLPDE--------SITILFAGQAPHMSADAHYKFVPNRNFYYVTGIDEPNVIFMLKKFGNSVEETL 73 (427)
T ss_dssp CHHHHHHHHHHHHTTSCSS--------EEEEEECCCCCEEETTEECCCCCCHHHHHHHCCCSTTCEEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHHHhCcCC--------CEEEEECCCccccCCCCCCcccCCCCeEEeeCCCCCCEEEEEEccCCCceEEE
Confidence 5788999999998775432 1334444432 2233342 44455699999999999999977 2455
Q ss_pred EEechhh-hhh-------hhhhhccCCCCccEEEEEeecCCCCChHHHHHHHHHHHhccCCCCCCCCCeEEEeeCCCCC-
Q 003374 95 FLCSQKK-ASL-------LGMVKRSAKDAVGADVVIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPE- 165 (825)
Q Consensus 95 ~LtS~KK-a~~-------Le~l~~~~~~~~~Veilvr~Kd~~~n~~~~fekli~~ik~~~~~~s~~g~kVGvl~Kdk~~- 165 (825)
|+.-.-. .++ ++..+. ..+++..... ..|.+.+..+-. ..+.++||.-......
T Consensus 74 fv~~~~~~~~~w~g~r~~~~~a~~----~~~~~~v~~~--------~~~~~~l~~~~~-----~~~~~~i~~~~~~~~~~ 136 (427)
T 3ig4_A 74 FIEKSDPVMEKWVGKTVSNEEAEK----ISGIKKVIYL--------DSFEKTMSNIFF-----TENVKHLYLDLECREWK 136 (427)
T ss_dssp EECCCCTTGGGTTCCCCCHHHHHH----HHCCSEEEEG--------GGHHHHHHHHHT-----TTCCCEEEECCCCCCTT
T ss_pred EecCCCccceEEeCCCCcHHHHHh----cCCCCEEEEh--------hhHHHHHHHHHh-----cCCCcEEEEeCCccccc
Confidence 5543111 111 111111 1224332221 235544444431 1235678876543211
Q ss_pred --CchHHHHHHHHhcc--CCceeccchhhHhHhhccChhhhhceee
Q 003374 166 --GRLLETWADRLQNS--GFQLSDVTNGLSELFAVKDQEEIMNVKK 207 (825)
Q Consensus 166 --G~F~~~W~~~l~~~--~~e~VDVS~~iS~llavKDe~Ei~~ikk 207 (825)
-.+.-.|...|.+. +.+.+|++..|..+-+||++.||..||+
T Consensus 137 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~lR~iKs~~EI~~mr~ 182 (427)
T 3ig4_A 137 GTETKTLAFAKHVREQYPHVTIGNVYPNICELRVFKTDEEIEIIKE 182 (427)
T ss_dssp CCCCHHHHHHHHHHHHCTTCEEEECHHHHHHHHTSCCHHHHHHHHH
T ss_pred cccccCHHHHHHHHhhCCCCeEeEhHHHHHHHHhcCCHHHHHHHHH
Confidence 11222333444332 5789999999999999999999999987
No 17
>3ovk_A Aminopeptidase P, XAA-Pro dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.00A {Streptococcus pyogenes}
Probab=93.94 E-value=0.28 Score=45.26 Aligned_cols=123 Identities=11% Similarity=0.152 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCCEEEEEcCCCCccccchhhhhhhHhhcCCcccceeeEeecCeEEEEechhhhhhhh
Q 003374 27 NFSTRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIWLLGYEFPETVMVFMKKQIQFLCSQKKASLLG 106 (825)
Q Consensus 27 ~F~~RLk~L~~~Wk~~~~~~~~~~dai~i~~G~~~ed~~Y~KStaLq~WLlGYEFpdTlivftk~~i~~LtS~KKa~~Le 106 (825)
.|..||.+|...-++ .++|+++|..+. =-.||.||.-...+.|+|+++.+++|... +.+
T Consensus 7 ~~~~Rl~~l~~~m~~------~~~da~li~~~~------------n~~YltGf~~~~~~~vv~~~~~~l~td~r---y~~ 65 (132)
T 3ovk_A 7 FLEQRLGHCLRQMAE------KGLEALLVTHLT------------NSYYLTGFSGTAATVLITAKRRVLITDSR---YTL 65 (132)
T ss_dssp HHHHHHHHHHHHHHH------HTCCEEEECSHH------------HHHHHHCCCCSCCEEEEESSCEEEEECTT---THH
T ss_pred HHHHHHHHHHHHHHH------CCCCEEEEcCcc------------cceeeeCccCCCEEEEEECCccEEEECch---hHH
Confidence 578999999998887 368898776642 15799999888888889999988888754 233
Q ss_pred hhhccCCCCccEEEEEeecCCCCChHHHHHHHHHHHhccCCCCCCCCCeEEEeeCCCCCCchHHHHHHHHhccCCceecc
Q 003374 107 MVKRSAKDAVGADVVIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWADRLQNSGFQLSDV 186 (825)
Q Consensus 107 ~l~~~~~~~~~Veilvr~Kd~~~n~~~~fekli~~ik~~~~~~s~~g~kVGvl~Kdk~~G~F~~~W~~~l~~~~~e~VDV 186 (825)
+..... ...+|+... + . ++.|.+.++. ..+++||+=.. .+-.+...+.+.+. +.++||+
T Consensus 66 qa~~~~---~~~~v~~~~----~-~---~~~l~~~l~~------~~~~~ig~e~~--~~~~~~~~L~~~l~--~~~~v~~ 124 (132)
T 3ovk_A 66 LAKASV---EGFDIIESR----T-P---LKVVAELLEA------DQIDCLGFEDQ--VSFSFYQAMQAELS--GITLLAQ 124 (132)
T ss_dssp HHHHHC---TTCEEEECS----C-H---HHHHHHHHHH------HTCCEEEEETT--SBHHHHHHHHHHCT--TCEEEEE
T ss_pred HHHHhC---CCcEEEEeC----C-C---HHHHHHHHHH------cCCCEEEEcCC--CCHHHHHHHHhhCC--CCeEEEC
Confidence 433221 124454331 1 1 2445555552 13578997544 55555666665553 6788888
Q ss_pred chhhH
Q 003374 187 TNGLS 191 (825)
Q Consensus 187 S~~iS 191 (825)
+..|.
T Consensus 125 ~~~v~ 129 (132)
T 3ovk_A 125 SGFVE 129 (132)
T ss_dssp SSTTG
T ss_pred chHHH
Confidence 77653
No 18
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida} SCOP: c.55.2.1 d.127.1.1
Probab=93.74 E-value=0.37 Score=52.80 Aligned_cols=147 Identities=15% Similarity=0.213 Sum_probs=84.8
Q ss_pred cccCHHHHHHHHHHHHHHHccCCCCCCCCCCEEEEEcCCCCccccchhhhhhhHhhcCCcc-----cceeeEeecCeEEE
Q 003374 21 YSINLENFSTRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIWLLGYEF-----PETVMVFMKKQIQF 95 (825)
Q Consensus 21 v~ID~~~F~~RLk~L~~~Wk~~~~~~~~~~dai~i~~G~~~ed~~Y~KStaLq~WLlGYEF-----pdTlivftk~~i~~ 95 (825)
+.+..+.|..|+.+|.+.-++ .++|+++|.... + ..||.||.. |. .+|++.+..++
T Consensus 16 ~~~~~~e~~~R~~~l~~~m~~------~~~da~li~~~~---n---------i~yltg~~~~~~~~~~-~llv~~~~~~l 76 (401)
T 1chm_A 16 STFSAQEYANRQARLRAHLAA------ENIDAAIFTSYH---N---------INYYSDFLYCSFGRPY-ALVVTEDDVIS 76 (401)
T ss_dssp CSSCHHHHHHHHHHHHHHHHH------TTCSEEEECSHH---H---------HHHHHSCCCCCTTCCC-EEEECSSCEEE
T ss_pred cCCCHHHHHHHHHHHHHHHHH------CCCCEEEEeCcc---c---------ceeeCCCCcCCCCCeE-EEEEecCCCEE
Confidence 457889999999999998887 478887776431 1 357777642 33 34456666666
Q ss_pred EechhhhhhhhhhhccCCCCcc-EEEEEeecCCCCChHHHHHHHHHHHhccCCCCCCCCCeEEEeeCCCCCCchHHHHHH
Q 003374 96 LCSQKKASLLGMVKRSAKDAVG-ADVVIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWAD 174 (825)
Q Consensus 96 LtS~KKa~~Le~l~~~~~~~~~-Veilvr~Kd~~~n~~~~fekli~~ik~~~~~~s~~g~kVGvl~Kdk~~G~F~~~W~~ 174 (825)
++...-... .+... .. -.+....- ... ..++.|.+.+. .+++||+=.. ...-.+.....+
T Consensus 77 ~~~~~~~~~--~~~~~----~~~~~v~~~~~---~~~-~~~~~l~~~l~--------~~~~i~ve~~-~~~~~~~~~l~~ 137 (401)
T 1chm_A 77 ISANIDGGQ--PWRRT----VGTDNIVYTDW---QRD-NYFAAIQQALP--------KARRIGIEHD-HLNLQNRDKLAA 137 (401)
T ss_dssp EEEGGGTTH--HHHHC----CSSEEEEECTT---STT-HHHHHHHHHCS--------CCSEEEECTT-TCBHHHHHHHHH
T ss_pred Eecccchhh--HHHhh----cccceeeeccc---ccc-CHHHHHHHHhc--------cCCeEEEecC-CCCHHHHHHHHh
Confidence 654321111 11111 11 12222211 112 34444444432 3567987422 222122222222
Q ss_pred HHhccCCceeccchhhHhHhhccChhhhhceee
Q 003374 175 RLQNSGFQLSDVTNGLSELFAVKDQEEIMNVKK 207 (825)
Q Consensus 175 ~l~~~~~e~VDVS~~iS~llavKDe~Ei~~ikk 207 (825)
.+ .+.+.+|++..+..+.+||++.||..||.
T Consensus 138 ~~--~~~~~~~~~~~i~~~R~iKs~~Ei~~~r~ 168 (401)
T 1chm_A 138 RY--PDAELVDVAAACMRMRMIKSAEEHVMIRH 168 (401)
T ss_dssp HC--TTCEEEECHHHHHHHHTSCCHHHHHHHHH
T ss_pred hC--CCCEEEEhHHHHHHHHhcCCHHHHHHHHH
Confidence 22 25789999999999999999999999987
No 19
>3pn9_A Proline dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, hydrolase; 2.00A {Streptococcus pneumoniae}
Probab=93.53 E-value=0.32 Score=44.67 Aligned_cols=129 Identities=12% Similarity=0.108 Sum_probs=78.9
Q ss_pred HHHHHHHHHHccCCCCCCCCCCEEEEEcCCCCccccchhhhhhhHhhcCCcccce----eeEeecC-eEEEEechhhhhh
Q 003374 30 TRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIWLLGYEFPET----VMVFMKK-QIQFLCSQKKASL 104 (825)
Q Consensus 30 ~RLk~L~~~Wk~~~~~~~~~~dai~i~~G~~~ed~~Y~KStaLq~WLlGYEFpdT----livftk~-~i~~LtS~KKa~~ 104 (825)
.||.+|...-++ .++|+++|..+. + -.||+||.-.+. .+|++.+ +.+++|......-
T Consensus 5 ~Rl~~lr~~m~~------~~~da~li~~~~----n--------i~yltGf~g~~~er~~~lli~~~g~~~l~~d~~~~~~ 66 (138)
T 3pn9_A 5 SKLQQILTYLES------EKLDVAVVSDPV----T--------INYLTGFYSDPHERQMFLFVLADQEPLLFVPALEVER 66 (138)
T ss_dssp CHHHHHHHHHHH------HTCSEEEECCHH----H--------HHHHHSCCCCCTTSCCEEEEESSSCCEEEEEGGGHHH
T ss_pred HHHHHHHHHHHH------CCCCEEEEcCcC----c--------eeeecCCCCCCccceEEEEEeCCCCEEEEEeccchhh
Confidence 478888887776 468898776431 1 379999977662 5666776 8888888776553
Q ss_pred hhhhhccCCCCccEEEEEeecCCCCChHHHHHHHHHHHhccCCCCCCCCCeEEEeeCCCCCCchHHHHHHHHhccCCcee
Q 003374 105 LGMVKRSAKDAVGADVVIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWADRLQNSGFQLS 184 (825)
Q Consensus 105 Le~l~~~~~~~~~Veilvr~Kd~~~n~~~~fekli~~ik~~~~~~s~~g~kVGvl~Kdk~~G~F~~~W~~~l~~~~~e~V 184 (825)
.+ + . ..++|.... + .+ ..++.|.+.++. ..+++||+=.. ..+-.+...+.+.+. +.+.|
T Consensus 67 a~--~-~----~~~~v~~~~-~-~~---~~~~~l~~~l~~------~~~~~vg~e~~-~~~~~~~~~l~~~~~--~~~~v 125 (138)
T 3pn9_A 67 AS--S-T----VSFPVVGYV-D-SE---NPWQKIKHALPQ------LDFKRVAVEFD-NLILTKYHGLKTVFE--TAEFD 125 (138)
T ss_dssp HH--H-H----CSSCEEEEC-T-TS---CHHHHHHHHSCC------CCCCEEEECTT-TCCHHHHHHHHHHST--TCEEE
T ss_pred hh--c-c----CCCcEEEEc-C-CC---CHHHHHHHHHHh------ccCCeEEEecC-cCCHHHHHHHHHHCC--CCeee
Confidence 33 1 1 123444332 1 11 335666677763 23567886543 333334444444332 57899
Q ss_pred ccchhhHhHhhcc
Q 003374 185 DVTNGLSELFAVK 197 (825)
Q Consensus 185 DVS~~iS~llavK 197 (825)
|++..|..+=+||
T Consensus 126 ~~~~~i~~lR~iK 138 (138)
T 3pn9_A 126 NLTPRIQRMRLIK 138 (138)
T ss_dssp ECHHHHHHHTTCC
T ss_pred ehHHHHHHHhhcC
Confidence 9999888777776
No 20
>3ooo_A Proline dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, hydrolase; HET: MSE; 1.57A {Streptococcus agalactiae} PDB: 3peb_A*
Probab=89.43 E-value=1.1 Score=40.95 Aligned_cols=122 Identities=11% Similarity=0.084 Sum_probs=71.1
Q ss_pred HHHHHHHHHHccCCCCCCCCCCEEEEEcCCCCccccchhhhhhhHhhcCCcccce----eeEeecC-eEEEEechhhhhh
Q 003374 30 TRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIWLLGYEFPET----VMVFMKK-QIQFLCSQKKASL 104 (825)
Q Consensus 30 ~RLk~L~~~Wk~~~~~~~~~~dai~i~~G~~~ed~~Y~KStaLq~WLlGYEFpdT----livftk~-~i~~LtS~KKa~~ 104 (825)
.||.+|...-++ .++|+++|..+. =-.||.||.-... .+|++.+ ..+++|..- +
T Consensus 3 ~Rl~~l~~~m~~------~glDa~li~~~~------------ni~YlTGf~~~~~er~~~l~v~~~g~~~l~~~~~---y 61 (132)
T 3ooo_A 3 SKLNRIRHHLHS------VQAELAVFSDPV------------TVNYLTGFFCDPHERQMFLFVYEDRDPILFVPAL---E 61 (132)
T ss_dssp HHHHHHHHHHHH------TTCSEEEECCHH------------HHHHHHSCCCCCTTSCCEEEEESSSCCEEEEEGG---G
T ss_pred hHHHHHHHHHHH------CCCCEEEEcCcc------------hHHHHhCCCCCCCcceEEEEEeCCCCEEEEEecc---c
Confidence 588888888776 478898885321 1589999976552 5566665 567776554 2
Q ss_pred hhhhhccCCCCccEEEEEeecCCCCChHHHHHHHHHHHhccCCCCCCCCCeEEEeeCCCCCCchHHHHHHHHhccCCcee
Q 003374 105 LGMVKRSAKDAVGADVVIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWADRLQNSGFQLS 184 (825)
Q Consensus 105 Le~l~~~~~~~~~Veilvr~Kd~~~n~~~~fekli~~ik~~~~~~s~~g~kVGvl~Kdk~~G~F~~~W~~~l~~~~~e~V 184 (825)
.++..... ..+|+... + .+ ..++.|.+.++. ...++||+=. +..+-.+...+.+.+. .+.|
T Consensus 62 ~~~a~~~~----~~~v~~~~-d-~~---~~~~~l~~~l~~------~~~~~ig~e~-~~~~~~~~~~L~~~~~---~~~~ 122 (132)
T 3ooo_A 62 VSRAKQSV----PFPVFGYI-D-SE---NPWQKIASNLPS------FSVSKVLAEF-DNLNVTKFQGLQTVFD---GHFE 122 (132)
T ss_dssp HHHHHHHC----SSCEEEEC-T-TS---CHHHHHHHHCSC------CCCSEEEECT-TTCCHHHHHHHHHHCC---SEEE
T ss_pred hHHHHhcC----CCcEEEEe-C-CC---CHHHHHHHHHhh------ccCCeEEEec-CCcCHHHHHHHHHhCC---ccee
Confidence 33443321 23344332 1 12 235666666652 2335788643 3455555556655542 6789
Q ss_pred ccchhhH
Q 003374 185 DVTNGLS 191 (825)
Q Consensus 185 DVS~~iS 191 (825)
|++..|.
T Consensus 123 ~~~~~v~ 129 (132)
T 3ooo_A 123 NLTPYIQ 129 (132)
T ss_dssp ECCHHHH
T ss_pred chHHHHH
Confidence 9888664
No 21
>3o5v_A X-Pro dipeptidase; creatinase, N-terminal, PSI, MCSG, structural G midwest center for structural genomics; 1.85A {Streptococcus pyogenes m1 gas}
Probab=89.05 E-value=0.85 Score=41.87 Aligned_cols=122 Identities=8% Similarity=0.064 Sum_probs=69.4
Q ss_pred HHHHHHHHHHccCCCCCCCCCCEEEEEcCCCCccccchhhhhhhHhhcCCcccce----eeEeecC-eEEEEechhhhhh
Q 003374 30 TRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIWLLGYEFPET----VMVFMKK-QIQFLCSQKKASL 104 (825)
Q Consensus 30 ~RLk~L~~~Wk~~~~~~~~~~dai~i~~G~~~ed~~Y~KStaLq~WLlGYEFpdT----livftk~-~i~~LtS~KKa~~ 104 (825)
.||.+|...-++ .++|+++|..+ +=-.||.||.-... .+|++++ +.+++|..- +
T Consensus 3 ~Rl~~l~~~m~~------~glDa~li~~~------------~ni~YltGf~~~~~er~~~l~v~~~g~~~l~~~~~---y 61 (132)
T 3o5v_A 3 AKLDQIRLYLDQ------KGAELAIFSDP------------VTINYLTGFFCDPHERQLFLFVYHDLAPVLFVPAL---E 61 (132)
T ss_dssp HHHHHHHHHHHH------TTCCEEEECCH------------HHHHHHHSCCCCCTTSCCEEEEESSSCCEEEEEGG---G
T ss_pred HHHHHHHHHHHH------CCCCEEEEcCc------------chhhHhhCCCCCCccceEEEEEeCCCCEEEEeehh---h
Confidence 588888888776 47889888532 11589999976552 5666765 677777654 2
Q ss_pred hhhhhccCCCCccEEEEEeecCCCCChHHHHHHHHHHHhccCCCCCCCCCeEEEeeCCCCCCchHHHHHHHHhccCCcee
Q 003374 105 LGMVKRSAKDAVGADVVIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWADRLQNSGFQLS 184 (825)
Q Consensus 105 Le~l~~~~~~~~~Veilvr~Kd~~~n~~~~fekli~~ik~~~~~~s~~g~kVGvl~Kdk~~G~F~~~W~~~l~~~~~e~V 184 (825)
.++..... ..+|+... + .+ ..++.|.+.++. ...++||+=.. ..+-.+...+.+.+ ..+.|
T Consensus 62 ~~~a~~~~----~~~i~~~~-d-~~---~~~~~l~~~l~~------~~~~~ig~e~~-~~~~~~~~~L~~~~---~~~~~ 122 (132)
T 3o5v_A 62 VARASQAI----SFPVFGYV-D-SE---NPWEKIKAVLPN------TAAKTIYAEFD-HLNVNKFHGLQTIF---SGQFN 122 (132)
T ss_dssp HHHHHHHC----CSCEEEEC-T-TS---CHHHHHHHHCSC------CCCSEEEECTT-TCCHHHHHHHHTTC---CSEEE
T ss_pred hHHHHhcC----CCcEEEEE-C-CC---CHHHHHHHHHhh------ccCCeEEEecC-CCCHHHHHHHHHhC---CCcee
Confidence 33443221 13344332 1 12 235666666662 23457886433 34444444444333 26788
Q ss_pred ccchhhH
Q 003374 185 DVTNGLS 191 (825)
Q Consensus 185 DVS~~iS 191 (825)
|++..|.
T Consensus 123 ~~~~~v~ 129 (132)
T 3o5v_A 123 NLTPYVQ 129 (132)
T ss_dssp ECHHHHH
T ss_pred ccHHHHH
Confidence 8887664
No 22
>3i7m_A XAA-Pro dipeptidase; structural genomics, APC64794.2, metall peptidase, creatinase/prolidase N-terminal domain, PSI-2; HET: MSE; 1.46A {Lactobacillus brevis}
Probab=88.08 E-value=1.3 Score=40.97 Aligned_cols=126 Identities=13% Similarity=0.136 Sum_probs=70.1
Q ss_pred HHHHHHHHHccCCCCCCCCCCEEEEEcCCCCccccchhhhhhhHhhcCCcccce----eeEeecC-eEEEEechhhhhhh
Q 003374 31 RLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIWLLGYEFPET----VMVFMKK-QIQFLCSQKKASLL 105 (825)
Q Consensus 31 RLk~L~~~Wk~~~~~~~~~~dai~i~~G~~~ed~~Y~KStaLq~WLlGYEFpdT----livftk~-~i~~LtS~KKa~~L 105 (825)
||.+|...-++ .++|+++|..+. =-.||.||..... .+|++++ ..+++|..- +.
T Consensus 5 Rl~~l~~~m~~------~glDa~li~~~~------------ni~YlTGf~~~~~er~~~llv~~~g~~~l~~~~~---~~ 63 (140)
T 3i7m_A 5 KLEQIQQWTAQ------HHASMTYLSNPK------------TIEYLTGFGSDPIERVLALVVFPDQDPFIFAPAL---EV 63 (140)
T ss_dssp HHHHHHHHHHH------TTCSEEEECCHH------------HHHHHHCCCCCCCSSCCEEEECSSSCCEEEEEGG---GH
T ss_pred HHHHHHHHHHH------cCCCEEEECCCC------------cceeecCCCCCCccceEEEEEeCCCCEEEEEecc---cH
Confidence 88888887776 478898876432 1589999986663 5666665 677777654 23
Q ss_pred hhhhccCCCCccEEEEEeecCCCCChHHHHHHHHHHHhccCCCCCCCCCeEEEeeCCCCCCchHHHHHHHHhccCCcee-
Q 003374 106 GMVKRSAKDAVGADVVIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWADRLQNSGFQLS- 184 (825)
Q Consensus 106 e~l~~~~~~~~~Veilvr~Kd~~~n~~~~fekli~~ik~~~~~~s~~g~kVGvl~Kdk~~G~F~~~W~~~l~~~~~e~V- 184 (825)
.+.+... ...+|+... + .+ ..++.|.+.++.. ....++||+=.. ..+-.+...+.+.+ .+.+.|
T Consensus 64 ~~a~~~~---~~~~i~~~~-d-~~---~~~~~l~~~l~~~----~~~~~~ig~e~~-~~~~~~~~~L~~~l--~~~~~v~ 128 (140)
T 3i7m_A 64 EVIKETG---WQFPVIGYL-D-HE---NPWAMIADQVKQR----HVNPEHVAIEKG-QLQVARMEALAAQF--SAPSFDL 128 (140)
T ss_dssp HHHHTTT---CCSCEEEEC-T-TS---CHHHHHHHHHHHT----TCCCSEEEECTT-TSCHHHHHHHHTTS--SSCEEEE
T ss_pred HHHHhcc---CcCcEEEEc-C-CC---CHHHHHHHHHHHh----CCCCCeEEEccC-CCCHHHHHHHHHHC--CCCEEec
Confidence 3443221 123344332 1 12 2355566666630 013467886432 33333333333332 257889
Q ss_pred ccchhhHh
Q 003374 185 DVTNGLSE 192 (825)
Q Consensus 185 DVS~~iS~ 192 (825)
|++..|..
T Consensus 129 ~~~~~i~~ 136 (140)
T 3i7m_A 129 DITSFIEH 136 (140)
T ss_dssp ECHHHHHH
T ss_pred CHHHHHHH
Confidence 99887643
No 23
>3f5r_A FACT complex subunit POB3; APC7736, FACT complex (SPT16P-POB3P), saccharomyces cerevisi structural genomics, PSI-2; 1.70A {Saccharomyces cerevisiae}
Probab=88.03 E-value=0.99 Score=45.57 Aligned_cols=88 Identities=20% Similarity=0.277 Sum_probs=66.2
Q ss_pred eeEeEeeCcccceeccc---c-------CceEEecCceeEEEEEeecCCcceeeEEEEEecCCCCeEEEecccCCChHhH
Q 003374 600 ASAFIVPTSSCLVELIE---T-------PFLVVTLGEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSSSLDSI 669 (825)
Q Consensus 600 s~v~l~Pt~~cLv~l~e---~-------P~~vitl~eIeiV~fERV~~~~knFDmvfvfKd~~~~~~~i~~Ip~~~ld~I 669 (825)
..|.|.-+..-|..=.. - .++.|+=+||..|...|+. +.|-|.|.+|+ +.+++|+..+.++++.|
T Consensus 36 ~~G~lkla~~glgWK~~~~tG~~~~~~~k~~~i~~sdI~~a~W~r~~---rg~~LrI~~K~--g~~~~fdGF~~~D~~~L 110 (191)
T 3f5r_A 36 FSGRFRIADSGLGWKISTSGGSAANQARKPFLLPATELSTVQWSRGC---RGYDLKINTKN--QGVIQLDGFSQDDYNLI 110 (191)
T ss_dssp SCEEEEEETTEEEEEECCSSTTTHHHHCCCEEEEGGGEEEEEEEECS---SSEEEEEEESS--SCEEEEEEECGGGHHHH
T ss_pred cccEEEEcCCceEEeecCCCCccccccCceEEEcHHHcCeEEEEEcc---CCcEEEEEECC--CceEEecCCCHHHHHHH
Confidence 45555555555544432 2 5689999999999999976 88999999997 78999999999999999
Q ss_pred HHHhhhc-CeEEEeccccc---ChHHH
Q 003374 670 KEWLDTT-DIKYYESRLNL---NWRQI 692 (825)
Q Consensus 670 k~wL~s~-~I~~~Eg~~nl---nW~~i 692 (825)
+++|... +|...+-.+++ ||..+
T Consensus 111 ~~~fk~~f~i~Le~kEls~kGwNWG~~ 137 (191)
T 3f5r_A 111 KNDFHRRFNIQVEQREHSLRGWNWGKT 137 (191)
T ss_dssp HHHHHHHHCCCCEECSSTTTTC-----
T ss_pred HHHHHHHcCCCceeeeeecccccceec
Confidence 9999987 77777766554 67654
No 24
>3qoc_A Putative metallopeptidase; MCSG, PSI-2, structural genomics, midwest center for structu genomics, hydrolase; HET: MSE; 2.15A {Corynebacterium diphtheriae}
Probab=85.08 E-value=2.4 Score=39.41 Aligned_cols=123 Identities=12% Similarity=0.144 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCCEEEEEcCCCCccccchhhhhhhHhhcCCcccceeeEee-cCeEEEEechhhhhh
Q 003374 26 ENFSTRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIWLLGYEFPETVMVFM-KKQIQFLCSQKKASL 104 (825)
Q Consensus 26 ~~F~~RLk~L~~~Wk~~~~~~~~~~dai~i~~G~~~ed~~Y~KStaLq~WLlGYEFpdTlivft-k~~i~~LtS~KKa~~ 104 (825)
..+..||.+|...-++ .++|+++|.. ..+ -.||.||.-.....|+| +++-+++|-.. +
T Consensus 8 ~~~~~Rl~~l~~~m~~------~~~da~li~~----~~n--------~~yltGf~~s~g~lvv~~~~~a~l~td~R---y 66 (135)
T 3qoc_A 8 TRFLQRRRALSAQLAA------KRIDAMLVTH----LTH--------IRYLSGFTGSNAALIINKDLSARISTDGR---Y 66 (135)
T ss_dssp CHHHHHHHHHHHTHHH------HTCSEEEECC----HHH--------HHHHHCCCSSCCEEEEETTSCEEEEECGG---G
T ss_pred HHHHHHHHHHHHHHHH------CCCCEEEEcC----hhh--------CeeeecccCCCeEEEEeeCCccEEEeCcH---H
Confidence 4578999999988876 3688988842 111 37999998766777788 78888888654 3
Q ss_pred hhhhhccCCCCccEEEEEeecCCCCChHHHHHHHHHHHhccCCCCCCCCCeEEEeeCCCCCCchHHHHHHHHhccCCcee
Q 003374 105 LGMVKRSAKDAVGADVVIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWADRLQNSGFQLS 184 (825)
Q Consensus 105 Le~l~~~~~~~~~Veilvr~Kd~~~n~~~~fekli~~ik~~~~~~s~~g~kVGvl~Kdk~~G~F~~~W~~~l~~~~~e~V 184 (825)
.++.+... ..++++... ..++.|.+.+ ..+++||+=.. ..+-.+...+.+.|.. +.++|
T Consensus 67 ~~qA~~~~---~~~~i~~~~--------~~~~~l~~~~--------~~~~~vG~e~~-~ls~~~~~~L~~~l~~-~~~lv 125 (135)
T 3qoc_A 67 ITQIAEQV---PDIESLMAR--------NCAPALLSDI--------NGPKRVGFEAD-YLSVSQCEELRKSAGS-DVELI 125 (135)
T ss_dssp HHHHHHHC---TTSEEEECS--------SHHHHHHHTC--------CSSEEEEEETT-TSBHHHHHHHHHHSCT-TEEEE
T ss_pred HHHHHHhC---CCcEEEEeC--------cHHHHHHhcC--------cCCCeEEECCC-cccHHHHHHHHHhccC-CcEEE
Confidence 44444321 135555431 1133343311 34567886544 4454555555555532 36788
Q ss_pred ccchhh
Q 003374 185 DVTNGL 190 (825)
Q Consensus 185 DVS~~i 190 (825)
+++..|
T Consensus 126 ~~~~~v 131 (135)
T 3qoc_A 126 PVTGAI 131 (135)
T ss_dssp EECSCC
T ss_pred ECccHH
Confidence 887655
No 25
>3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea center, BI-functional, prolidase, nerve agents, XAA-Pro DIP hydrolase; 1.80A {Alteromonas macleodii}
Probab=79.50 E-value=2.8 Score=47.20 Aligned_cols=150 Identities=15% Similarity=0.125 Sum_probs=82.2
Q ss_pred ccCHHHHHHHHHHHHHHHccCCCCCCCCCCEEEEEcCCC----Cccccch-hhhhhhHhhcCCc-ccceeeEeecC--eE
Q 003374 22 SINLENFSTRLKALYSHWNKHKSDYWGSADVLAIATPPA----SEDLRYL-KSSALNIWLLGYE-FPETVMVFMKK--QI 93 (825)
Q Consensus 22 ~ID~~~F~~RLk~L~~~Wk~~~~~~~~~~dai~i~~G~~----~ed~~Y~-KStaLq~WLlGYE-FpdTlivftk~--~i 93 (825)
.-+...|.+|++.+...= +.|+++|..|.. +.|..|. ....-+.||+|.. .|+..+++..+ ..
T Consensus 9 ~~~~~~~~~r~~~~l~~~---------~~~~~~i~~~~~~~~~~~D~~~~frq~~~f~yl~g~~e~p~~~L~~~~~~~~~ 79 (451)
T 3rva_A 9 QQHIEELQARTREALQRE---------GLDGLVIHSGQGKRLFLDDNHYPFKVNPQFKAWVPVIDNPNCWLVVNGVDKPT 79 (451)
T ss_dssp HHHHHHHHHHHHHHHHHH---------TCSEEEEECCCCCBCTTSSCBCCCCCCHHHHTTCSCCSCSSCEEEECSSSCCE
T ss_pred HHHHHHHHHHHHHHHHhC---------CCCEEEEECCCceEEecCCCCCCcccCCCceEEeccCCCCCEEEEEecCCCeE
Confidence 344556677777666542 346888888863 2333332 4566778999985 49998888553 45
Q ss_pred EEEechhhhhhhhhhhccCC----CCccEEEEEeecCCCCChHHHHHHHHHHHhccCCCCCCCCCeEEEeeCCCCCCchH
Q 003374 94 QFLCSQKKASLLGMVKRSAK----DAVGADVVIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLL 169 (825)
Q Consensus 94 ~~LtS~KKa~~Le~l~~~~~----~~~~Veilvr~Kd~~~n~~~~fekli~~ik~~~~~~s~~g~kVGvl~Kdk~~G~F~ 169 (825)
.+++-++ .+-........ ....|.-+ + + . ..+.+ .+. ....+++.+ |.-.
T Consensus 80 l~~~~~~--d~w~~~~~~~~~~~~~~~~v~~~-~--~----~-~~~~~---~l~-------~~~~~~~~~------g~~~ 133 (451)
T 3rva_A 80 LIFYRPE--DFWHKVPPEPNDFWTDSFDIKLL-Q--Q----A-DAVEK---FLP-------YDKSRFAYV------GEYI 133 (451)
T ss_dssp EEEECCC--CTTSCCCCSCCSTTGGGSEEEEE-S--S----G-GGGGG---GSC-------SCGGGEEEE------SSCH
T ss_pred EEeeccH--HhhhccccCcchhHHhccCeEEE-e--c----H-HHHHH---HHh-------hccCceEEE------ccCc
Confidence 5666543 22211110000 11233221 2 1 1 11222 222 122345544 2222
Q ss_pred HHHHHHHhccCCceeccchhhHhHhhccChhhhhceee
Q 003374 170 ETWADRLQNSGFQLSDVTNGLSELFAVKDQEEIMNVKK 207 (825)
Q Consensus 170 ~~W~~~l~~~~~e~VDVS~~iS~llavKDe~Ei~~ikk 207 (825)
+ |..++.-...+.+|++..|..+-+||++.||..||.
T Consensus 134 ~-~~~~~~~~~~~~~~~~~~l~~lR~iKs~~EI~~mr~ 170 (451)
T 3rva_A 134 E-VAKALGFDNVNPDRVLHYLHYQRAYKTDYELDCMRE 170 (451)
T ss_dssp H-HHHHHTCSCBSCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred C-HHHhhhhcccCchHHHHHHHHHHhcCCHHHHHHHHH
Confidence 2 333332223567899999999999999999999987
No 26
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing, cytoplasm, hydrolase, manganese, metal-binding, metalloprotease, protease; HET: P6G; 1.60A {Homo sapiens}
Probab=77.14 E-value=8.4 Score=44.98 Aligned_cols=149 Identities=7% Similarity=0.011 Sum_probs=83.4
Q ss_pred cccCHHHHHHHHHHHHHHHccCCCCCCCCCCEEEEEcCCCCccccchhhhhhhHhhcCCccc--------ceeeEeecCe
Q 003374 21 YSINLENFSTRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIWLLGYEFP--------ETVMVFMKKQ 92 (825)
Q Consensus 21 v~ID~~~F~~RLk~L~~~Wk~~~~~~~~~~dai~i~~G~~~ed~~Y~KStaLq~WLlGYEFp--------dTlivftk~~ 92 (825)
..+-...|..||.+|...-++ .++|+++|..+. + -.||+|+.=. -..++++.+.
T Consensus 171 ~~~ag~~~~~rl~~lr~~m~e------~~~dallit~~~----~--------i~yl~~~~G~dv~~~pi~~~~llv~~~~ 232 (623)
T 3ctz_A 171 LDYTGISWKDKVADLRLKMAE------RNVMWFVVTALD----E--------IAWLFNLRGSDVEHNPVFFSYAIIGLET 232 (623)
T ss_dssp HHHHSSCHHHHHHHHHHHHHT------TTEEEEEECCHH----H--------HHHHHTEECCSSSSSCCCSCEEEEESSC
T ss_pred hhhcChhHHHHHHHHHHHHHH------cCCCEEEECCHH----H--------HHHHhCCCCccCCCCcceeEEEEEecCC
Confidence 345566789999999888776 367786664431 1 1488887411 1335678888
Q ss_pred EEEEechhhhh---hhhhhhccCC--CCccEEEEEeecCCCCChHHHHHHHHHHHhccCCCCCCCCCeEEEeeCCCCCCc
Q 003374 93 IQFLCSQKKAS---LLGMVKRSAK--DAVGADVVIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGR 167 (825)
Q Consensus 93 i~~LtS~KKa~---~Le~l~~~~~--~~~~Veilvr~Kd~~~n~~~~fekli~~ik~~~~~~s~~g~kVGvl~Kdk~~G~ 167 (825)
.++++...|.. .-..+..... ....|+|..- . . +...+..+... ...+++||+=.. .
T Consensus 233 ~~l~v~~~~~~~~~~~~~l~~~~~~p~~~~v~v~~y-------~-~-~~~~l~~l~~~----~~~~~~i~id~~-~---- 294 (623)
T 3ctz_A 233 IMLFIDGDRIDAPSVKEHLLLDLGLEAEYRIQVHPY-------K-S-ILSELKALCAD----LSPREKVWVSDK-A---- 294 (623)
T ss_dssp EEEECCSGGGGSHHHHHHTTTTSCCCGGGCEEEECG-------G-G-HHHHHHHHHHT----CCTTCEEEEETT-S----
T ss_pred cEEEEechhcCHHHHHHHHhhccccccCCceEEEEh-------H-H-HHHHHHHHHhc----ccCCeEEEECch-h----
Confidence 88888776542 1222210000 0012554311 1 2 23333433210 012467886432 1
Q ss_pred hHHHHHHHHhccCCceeccchhhHhHhhccChhhhhceee
Q 003374 168 LLETWADRLQNSGFQLSDVTNGLSELFAVKDQEEIMNVKK 207 (825)
Q Consensus 168 F~~~W~~~l~~~~~e~VDVS~~iS~llavKDe~Ei~~ikk 207 (825)
.-.....|. .+.+.+|.+..+..+.+||++.||..||.
T Consensus 295 -~~~l~~~l~-~~~~~v~~~~~i~~~R~iK~~~EI~~~r~ 332 (623)
T 3ctz_A 295 -SYAVSETIP-KDHRCCMPYTPICIAKAVKNSAESEGMRR 332 (623)
T ss_dssp -BHHHHHHSC-GGGEEEESSCHHHHHHHSCCHHHHHHHHH
T ss_pred -hHHHHHhcc-ccceEEecccHHHHHHhcCCHHHHHHHHH
Confidence 112223332 12367899889999999999999999987
No 27
>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase, manganese, metal-binding, metalloprotease, protease; 2.30A {Alteromonas SP} PDB: 3l7g_A*
Probab=76.68 E-value=4.5 Score=46.46 Aligned_cols=149 Identities=16% Similarity=0.127 Sum_probs=82.5
Q ss_pred cCHHHHHHHHHHHHHHHccCCCCCCCCCCEEEEEcCCC----Cccccch-hhhhhhHhhcCC-cccceeeEeecC--eEE
Q 003374 23 INLENFSTRLKALYSHWNKHKSDYWGSADVLAIATPPA----SEDLRYL-KSSALNIWLLGY-EFPETVMVFMKK--QIQ 94 (825)
Q Consensus 23 ID~~~F~~RLk~L~~~Wk~~~~~~~~~~dai~i~~G~~----~ed~~Y~-KStaLq~WLlGY-EFpdTlivftk~--~i~ 94 (825)
-+...|.+|++.+... .+.|+++|..|.. +.|..|. ....-+.||+|. |.|+.++++..+ ...
T Consensus 10 ~h~~~~~~r~~~~l~~---------~~~~~~~i~~~~~~~~~~~D~~~pFrq~s~F~yl~g~~e~p~~~l~~~~~~~~~l 80 (517)
T 3l24_A 10 EHIATLQKRTREIIER---------ENLDGVVFHSGQAKRQFLDDMYYPFKVNPQFKAWLPVIDNPHCWIVANGTDKPKL 80 (517)
T ss_dssp HHHHHHHHHHHHHHHH---------TTCSEEEEECCCCCBCTTSSCBCCCCCCHHHHTTSSCCSCSSCEEEECSSSCCEE
T ss_pred HHHHHHHHHHHHHHHh---------CCCCEEEEECCCceEEecCCCCCCceecCCceEEeccCCCCCEEEEEecCCCeEE
Confidence 4455666777766554 2456888888864 2333333 556677899999 559998888553 455
Q ss_pred EEechhhhhhhhhhhccCC----CCccEEEEEeecCCCCChHHHHHHHHHHHhccCCCCCCCCCeEEEeeCCCCCCchHH
Q 003374 95 FLCSQKKASLLGMVKRSAK----DAVGADVVIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLE 170 (825)
Q Consensus 95 ~LtS~KKa~~Le~l~~~~~----~~~~Veilvr~Kd~~~n~~~~fekli~~ik~~~~~~s~~g~kVGvl~Kdk~~G~F~~ 170 (825)
+++-.+ .+-........ ....|.-. + +. +.+. +.+. ....+++.+ |.-.+
T Consensus 81 ~~~~~~--d~w~g~~~~~~~~~~~~~~v~~~-~--~~-----~~~~---~~L~-------~~~~~~~~~------g~~~~ 134 (517)
T 3l24_A 81 IFYRPV--DFWHKVPDEPNEYWADYFDIELL-V--KP-----DQVE---KLLP-------YDKARFAYI------GEYLE 134 (517)
T ss_dssp EEECCC--CSSSCCCCCCCSGGGGGSEEEEE-S--SG-----GGCG---GGSC-------SCCTTEEEE------SSCHH
T ss_pred EEecch--hhhhccccCchhhhhhccCeEEE-c--CH-----HHHH---HHHh-------hccCceEEE------cCCcC
Confidence 666543 22211110000 11233221 2 11 1112 2222 123345544 22222
Q ss_pred HHHHHHhccCCceeccchhhHhHhhccChhhhhceee
Q 003374 171 TWADRLQNSGFQLSDVTNGLSELFAVKDQEEIMNVKK 207 (825)
Q Consensus 171 ~W~~~l~~~~~e~VDVS~~iS~llavKDe~Ei~~ikk 207 (825)
|..++.-...+.+|++..|..+-+||++.||+.||+
T Consensus 135 -~~~~~~~~~~~~~~~~~~l~~lR~iKs~~EIe~mR~ 170 (517)
T 3l24_A 135 -VAQALGFELMNPEPVMNFYHYHRAYKTQYELACMRE 170 (517)
T ss_dssp -HHHHHTCCCBSCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred -HHHhhhhccCCchhHHHHHHHHHhcCCHHHHHHHHH
Confidence 333333233567899999999999999999999987
No 28
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=67.46 E-value=1.4 Score=46.76 Aligned_cols=6 Identities=17% Similarity=0.418 Sum_probs=2.3
Q ss_pred EEEEEe
Q 003374 381 LKEVSF 386 (825)
Q Consensus 381 ikelt~ 386 (825)
++.|.+
T Consensus 124 L~~L~L 129 (386)
T 2ca6_A 124 LEHLYL 129 (386)
T ss_dssp CCEEEC
T ss_pred CCEEEC
Confidence 333433
No 29
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing, cytoplasm, hydrolase, manganese, metal-binding, metalloprotease, protease; HET: P6G; 1.60A {Homo sapiens}
Probab=57.68 E-value=76 Score=36.96 Aligned_cols=145 Identities=12% Similarity=0.142 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHccCCCCCCCCCCEEEEEcCCCCccccch-hhhhhhHhhcCCcccceeeEeecCeEEEEechhhhhhhhh
Q 003374 29 STRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYL-KSSALNIWLLGYEFPETVMVFMKKQIQFLCSQKKASLLGM 107 (825)
Q Consensus 29 ~~RLk~L~~~Wk~~~~~~~~~~dai~i~~G~~~ed~~Y~-KStaLq~WLlGYEFpdTlivftk~~i~~LtS~KKa~~Le~ 107 (825)
..||.+|...-++.... -+.+||++|..... -.+.|. -.-.=-.||.||-=.....|+|+++-+++|-.. +..|
T Consensus 7 ~~Rl~~LR~~m~~~~~~-~~~lda~lv~~~D~-h~sey~~~~~~~~~ylsGFtGSaG~~vVt~~~a~l~tDgR---Y~~Q 81 (623)
T 3ctz_A 7 SELLRQLRQAMRNSEYV-TEPIQAYIIPSGDA-HQSEYIAPCDCRRAFVSGFDGSAGTAIITEEHAAMWTDGR---YFLQ 81 (623)
T ss_dssp HHHHHHHHHHTTCTTTC-SSCCSEEEECSCCT-TCCSSCCGGGCHHHHHHSCCSSCCEEEEESSCEEEEECGG---GHHH
T ss_pred HHHHHHHHHHHHhcCCC-CCceeEEEECCCCc-cccccccchhccceeccCcCCCceEEEEecCeeEEEECcH---HHHH
Confidence 45899988877663200 12389988876542 112343 112233699998777788899999888887554 4444
Q ss_pred hhccCCCCccEEEEEeecCCCCChHHHHHHHH-HHHhccCCCCCCCCCeEEEeeCCCCCCchHHHHHHHHhccCCceecc
Q 003374 108 VKRSAKDAVGADVVIHVKAKTDDGVELMDAIF-NAVRSQSNVDSGDGPIVGSIARETPEGRLLETWADRLQNSGFQLSDV 186 (825)
Q Consensus 108 l~~~~~~~~~Veilvr~Kd~~~n~~~~fekli-~~ik~~~~~~s~~g~kVGvl~Kdk~~G~F~~~W~~~l~~~~~e~VDV 186 (825)
...... .+++++.. ..++ . ..+...+ +.+ ..|++||+=.. -.+-.....+.+.|...++++|++
T Consensus 82 A~~ql~--~~~~l~~~-~~~~--~-~~~~~~l~~~l--------~~~~~vG~d~~-~~s~~~~~~l~~~l~~~~~~lv~~ 146 (623)
T 3ctz_A 82 AAKQMD--SNWTLMKM-GLKD--T-PTQEDWLVSVL--------PEGSRVGVDPL-IIPTDYWKKMAKVLRSAGHHLIPV 146 (623)
T ss_dssp HHHHBC--TTEEEEET-TSTT--C-CCHHHHHHHHC--------CTTCEEEECGG-GSBHHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHhcC--CceEEEEe-cCCC--C-ccHHHHHHHhC--------cCCCEEEECcc-cccHHHHHHHHHHHHhcCCEEEec
Confidence 433211 23566532 1111 1 1222333 322 24789998665 556677778888887778899999
Q ss_pred c-hhhHhH
Q 003374 187 T-NGLSEL 193 (825)
Q Consensus 187 S-~~iS~l 193 (825)
. ..|-.+
T Consensus 147 ~~~lvd~i 154 (623)
T 3ctz_A 147 KENLVDKI 154 (623)
T ss_dssp SSCHHHHH
T ss_pred CCCcHHHH
Confidence 4 666555
No 30
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=30.59 E-value=83 Score=29.01 Aligned_cols=54 Identities=20% Similarity=0.309 Sum_probs=41.7
Q ss_pred CccCCceEEEEeceeeeeeCCCCc-eEEeeccccceeeeccCCCccEEEEEEEccC
Q 003374 452 GRKIPGTLEAHLNGFRFATSRPEE-RVDIMFGNIKHAFFQPAEKEMITLVHFHLHN 506 (825)
Q Consensus 452 ~kr~~G~lE~H~NG~Ry~s~~k~~-~idIly~NIKh~FfqP~~~E~ivlihfhLk~ 506 (825)
.||..|+|.+....+-.+...++. .+.+.|.+|++..-=|.-. --|.|-+.|++
T Consensus 17 yKK~dGtL~l~~d~i~W~p~~~~~~~vs~~~~~I~~qq~SP~~k-~KVqLqi~l~~ 71 (108)
T 1pfj_A 17 QKKQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGK-AKIQLQLVLHA 71 (108)
T ss_dssp CSSCBCEEEEETTEEEEECSSSSSCSEEEETTTCCCEEECCSSS-SSCEEEEECSS
T ss_pred eecCCceEEEEcceEEEccCCCCCceEEEehhhhhcceeCCCCC-ccEEEEEEEeC
Confidence 388899999999988887643332 4888999999987766655 45777888887
No 31
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=28.99 E-value=9 Score=45.17 Aligned_cols=8 Identities=38% Similarity=0.376 Sum_probs=0.0
Q ss_pred eeeeeEEe
Q 003374 517 DVQFYVEV 524 (825)
Q Consensus 517 dvQFy~E~ 524 (825)
-|+|-.++
T Consensus 47 ~v~f~~~~ 54 (649)
T 3tj1_A 47 KVQFSDST 54 (649)
T ss_dssp --------
T ss_pred cccccccc
Confidence 35554443
No 32
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=25.03 E-value=15 Score=43.34 Aligned_cols=12 Identities=25% Similarity=0.398 Sum_probs=7.2
Q ss_pred ccccceeeeccC
Q 003374 481 FGNIKHAFFQPA 492 (825)
Q Consensus 481 y~NIKh~FfqP~ 492 (825)
|..+++.|-.|.
T Consensus 93 Yd~L~~~~~~~~ 104 (649)
T 3tj1_A 93 IGIIANQVALPS 104 (649)
T ss_dssp HHHHHHHHHSCT
T ss_pred HHHHHHHhcCCC
Confidence 566666665554
No 33
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=24.12 E-value=14 Score=41.33 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003374 394 IGEVVGAIKTLRRQVMA 410 (825)
Q Consensus 394 ~~~~~~~Ikelkk~~~~ 410 (825)
....+..|+.||++..+
T Consensus 92 v~~rI~aLk~lQ~e~~~ 108 (417)
T 2ayu_A 92 VKEKLLSLKTLQSELFE 108 (417)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344455555544443
No 34
>3fm2_A Uncharacterized protein, distantly related to A H binding/degrading HEMS (PF05171)...; structural genomics; HET: MSE; 1.80A {Anabaena variabilis atcc 29413}
Probab=21.49 E-value=1.3e+02 Score=28.40 Aligned_cols=71 Identities=21% Similarity=0.441 Sum_probs=47.4
Q ss_pred CceEEeeccccceeeeccCCCccEEEEEEEccCceeeCceecceeeeeEEeeeeEEe--cCCCCCCCCChhHHHHHHHHH
Q 003374 474 EERVDIMFGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDVQFYVEVMDVVQT--LGGGKRSAYDPDEIEEEQRER 551 (825)
Q Consensus 474 ~~~idIly~NIKh~FfqP~~~E~ivlihfhLk~PI~~Gkkk~~dvQFy~E~~e~~~d--l~~~r~~~~D~dEle~Eq~Er 551 (825)
+-..-|.+++++|+||...+.. .|.....-||||...+++.+- ++.++.+-++++.++
T Consensus 56 ~idlrlf~~~w~~~~~v~~~~~--------------~G~~~~~SiqFFD~~G~av~Kvyl~~~~~~~l~~~~~~------ 115 (135)
T 3fm2_A 56 GFEFHLNMEKITQVKFETGEAK--------------RGNFTTYAIRFLDEKQESALSLFLQWGKPGEYEPGQVE------ 115 (135)
T ss_dssp SEEEEEEGGGCCEEEEEEEECT--------------TTCCEEEEEEEECTTSCEEEEEEECCSSTTCCCTTHHH------
T ss_pred CeeEEEEhhHeeEEEEEEeccc--------------CCCcceEEEEEECCCCCEEEEEEEecCccCCCCHHHHH------
Confidence 3456688999999999754321 155445679999988887664 444455557777774
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 003374 552 ARKNKINMDFQSFVNRVNDLW 572 (825)
Q Consensus 552 ~~r~klnk~F~~F~~~v~~~~ 572 (825)
.|+..+++....|
T Consensus 116 --------aw~aL~~k~~~~~ 128 (135)
T 3fm2_A 116 --------AWHTLKEKYGEVW 128 (135)
T ss_dssp --------HHHHHHHHHCSEE
T ss_pred --------HHHHHHHHHhccc
Confidence 4677766665544
Done!