BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003377
(824 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine.
pdb|2W5Z|A Chain A, Ternary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine
And Histone Peptide
Length = 192
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
Query: 681 KSDVAGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYD-RANSSFLFDLNDQYVLD 739
+S + G G F K ++ + + EY G +I + DKR K YD + ++F ++D V+D
Sbjct: 58 RSPIHGRGLFCKRNIDAGEMVIEYAGNVIRSIQTDKREKYYDSKGIGCYMFRIDDSEVVD 117
Query: 740 AYRKGDKLKFANHSSNPNCFAKVMLVAGDHRVGIFAKEHIEASEELFYDYRYGPDQA 796
A G+ +F NHS PNC+++V+ + G + IFA I EEL YDY++ + A
Sbjct: 118 ATMHGNAARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKFPIEDA 174
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of
Variegation 3-9 Homolog 2
Length = 300
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 67/118 (56%), Gaps = 11/118 (9%)
Query: 682 SDVAGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLN---DQYVL 738
S+ GWG + + ++ EY GE+I+ EA++RG+ YD ++LFDL+ D++ +
Sbjct: 148 SNGRGWGVKTLVKIKRMSFVMEYVGEVITSEEAERRGQFYDNKGITYLFDLDYESDEFTV 207
Query: 739 DAYRKGDKLKFANHSSNPNCFAKVMLVAGDH------RVGIFAKEHIEASEELFYDYR 790
DA R G+ F NHS +PN +V V D+ R+ +F+ I A EEL +DY+
Sbjct: 208 DAARYGNVSHFVNHSCDPN--LQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFDYQ 263
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
pdb|3OPE|B Chain B, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
Length = 222
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 85/190 (44%), Gaps = 36/190 (18%)
Query: 603 GCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGSLGEPPKRGDG 662
GC C NR ++C CPC + C+ + R+ WV C +
Sbjct: 37 GCVDDCLNRM-----IFAECSPNTCPC--GEQCCNQRIQRHEWVQCLE------------ 77
Query: 663 QCGNMXXXXXXXXXXXXAKSDVAGWGAFLKNSVSKNDYLGEYTGELISHREADKRG-KIY 721
+++ GWG K + ++ EY GE++S +E R + Y
Sbjct: 78 ----------------RFRAEEKGWGIRTKEPLKAGQFIIEYLGEVVSEQEFRNRMIEQY 121
Query: 722 DRANSSFLFDLNDQYVLDAYRKGDKLKFANHSSNPNCFAKVMLVAGDHRVGIFAKEHIEA 781
+ + +L+ V+D+YR G++ +F NHS +PNC + V G +R+G++A + + A
Sbjct: 122 HNHSDHYCLNLDSGMVIDSYRMGNEARFINHSCDPNCEMQKWSVNGVYRIGLYALKDMPA 181
Query: 782 SEELFYDYRY 791
EL YDY +
Sbjct: 182 GTELTYDYNF 191
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine
N-Methyltransferase Nsd1 Set Domain In Complex With
S-Adenosyl-L-Methionine
Length = 232
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 2/130 (1%)
Query: 662 GQCGNMXXXXXXXXXXXXAKSDVAGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIY 721
G+C N ++ GWG K + K +++ EY GELI E R +
Sbjct: 79 GRCQNQCFSKRQYPEVEIFRTLQRGWGLRTKTDIKKGEFVNEYVGELIDEEECRARIRYA 138
Query: 722 DRANSS--FLFDLNDQYVLDAYRKGDKLKFANHSSNPNCFAKVMLVAGDHRVGIFAKEHI 779
+ + ++ L+ ++DA KG+ +F NH PNC + V GD RVG+FA I
Sbjct: 139 QEHDITNFYMLTLDKDRIIDAGPKGNYARFMNHCCQPNCETQKWSVNGDTRVGLFALSDI 198
Query: 780 EASEELFYDY 789
+A EL ++Y
Sbjct: 199 KAGTELTFNY 208
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set
Domain- Containing Protein 2 Compound: Pr-Snf
pdb|4H12|A Chain A, The Crystal Structure Of Methyltransferase Domain Of Human
Set Domain- Containing Protein 2 In Complex With
S-Adenosyl-L-Homocysteine
Length = 278
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 5/118 (4%)
Query: 682 SDVAGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRANS--SFLFDLNDQYVLD 739
++ GWG + N ++ EY GE++ H+E R K Y R + + L + ++D
Sbjct: 124 TEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEIID 183
Query: 740 AYRKGDKLKFANHSSNPNCFAKVMLVAGDHRVGIFAKEHIEASEELFYDY---RYGPD 794
A +KG+ +F NHS PNC + V G RVG F + + + EL +DY RYG +
Sbjct: 184 ATQKGNCSRFMNHSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRYGKE 241
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3K5K|B Chain B, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3RJW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
pdb|3RJW|B Chain B, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
Length = 283
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 14/112 (12%)
Query: 686 GWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNDQ----YVLDAY 741
GWG ++ + ++ EY GELIS EAD R + S+LFDL+++ Y +DA
Sbjct: 139 GWGVRALQTIPQGTFICEYVGELISDAEADV------REDDSYLFDLDNKDGEVYCIDAR 192
Query: 742 RKGDKLKFANHSSNPNCF-AKVMLVAGD---HRVGIFAKEHIEASEELFYDY 789
G+ +F NH +PN +V ++ D R+ F+ I EEL +DY
Sbjct: 193 YYGNISRFINHLCDPNIIPVRVFMLHQDLRFPRIAFFSSRDIRTGEELGFDY 244
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|B Chain B, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|C Chain C, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|D Chain D, Human Euchromatic Histone Methyltransferase 2
Length = 281
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 14/112 (12%)
Query: 686 GWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNDQ----YVLDAY 741
GWG ++ + ++ EY GELIS EAD R + S+LFDL+++ Y +DA
Sbjct: 137 GWGVRALQTIPQGTFICEYVGELISDAEADV------REDDSYLFDLDNKDGEVYCIDAR 190
Query: 742 RKGDKLKFANHSSNPNCF-AKVMLVAGD---HRVGIFAKEHIEASEELFYDY 789
G+ +F NH +PN +V ++ D R+ F+ I EEL +DY
Sbjct: 191 YYGNISRFINHLCDPNIIPVRVFMLHQDLRFPRIAFFSSRDIRTGEELGFDY 242
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
pdb|1MVX|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
Length = 299
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 9/136 (6%)
Query: 681 KSDVAGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLN-----DQ 735
K+ GWG ++ Y GE+I+ EA KR K YD ++LFDL+ +
Sbjct: 143 KTKEKGWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNYDDDGITYLFDLDMFDDASE 202
Query: 736 YVLDAYRKGDKLKFANHSSNPNCFAKVMLVAGDHR----VGIFAKEHIEASEELFYDYRY 791
Y +DA GD +F NHS +PN + R + FA + I+ EEL +DY
Sbjct: 203 YTVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAG 262
Query: 792 GPDQAPAWARKPEGSK 807
D +P ++K + ++
Sbjct: 263 AKDFSPVQSQKSQQNR 278
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1
pdb|2IGQ|B Chain B, Human Euchromatic Histone Methyltransferase 1
pdb|2RFI|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|2RFI|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|3MO0|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO0|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO2|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO5|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3SWC|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SWC|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SW9|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
pdb|3SW9|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
Length = 285
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 14/112 (12%)
Query: 686 GWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNDQ----YVLDAY 741
GWG + ++ EY GELIS EAD R + S+LFDL+++ Y +DA
Sbjct: 156 GWGVRSLQDIPPGTFVCEYVGELISDSEADVREE------DSYLFDLDNKDGEVYCIDAR 209
Query: 742 RKGDKLKFANHSSNPNCF-AKVMLVAGD---HRVGIFAKEHIEASEELFYDY 789
G+ +F NH PN +V + D R+ F+ IEA E+L +DY
Sbjct: 210 FYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDY 261
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
pdb|3HNA|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
Length = 287
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 14/112 (12%)
Query: 686 GWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNDQ----YVLDAY 741
GWG + ++ EY GELIS EAD R + S+LFDL+++ Y +DA
Sbjct: 158 GWGVRSLQDIPPGTFVCEYVGELISDSEADVREE------DSYLFDLDNKDGEVYCIDAR 211
Query: 742 RKGDKLKFANHSSNPNCF-AKVMLVAGD---HRVGIFAKEHIEASEELFYDY 789
G+ +F NH PN +V + D R+ F+ IEA E+L +DY
Sbjct: 212 FYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDY 263
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
pdb|3FPD|B Chain B, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
Length = 261
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 14/112 (12%)
Query: 686 GWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNDQ----YVLDAY 741
GWG + ++ EY GELIS EAD R + S+LFDL+++ Y +DA
Sbjct: 132 GWGVRSLQDIPPGTFVCEYVGELISDSEADVREE------DSYLFDLDNKDGEVYCIDAR 185
Query: 742 RKGDKLKFANHSSNPNCF-AKVMLVAGD---HRVGIFAKEHIEASEELFYDY 789
G+ +F NH PN +V + D R+ F+ IEA E+L +DY
Sbjct: 186 FYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDY 237
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human
Histone-Lysine N-Methyltransferase Setmar
Length = 290
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 76/194 (39%), Gaps = 19/194 (9%)
Query: 612 FRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGSLGEPPK-------RGDGQC 664
F GC C K+ C C C G D + +C G G P R C
Sbjct: 59 FPGCICVKTPCLPGTCSCLRHGENYDDN---SCLRDIGSGGKYAEPVFECNVLCRCSDHC 115
Query: 665 GNMXXXXXXXXXXXXAKSDVAGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRA 724
N K+ GWG + K ++ EY GE++ E +R + ++
Sbjct: 116 RNRVVQKGLQFHFQVFKTHKKGWGLRTLEFIPKGRFVCEYAGEVLGFSEVQRRIHLQTKS 175
Query: 725 NSSFLFDLND--------QYVLDAYRKGDKLKFANHSSNPNCFA-KVMLVAGDHRVGIFA 775
+S+++ + + + +D G+ +F NHS PN V + + ++ +FA
Sbjct: 176 DSNYIIAIREHVYNGQVMETFVDPTYIGNIGRFLNHSCEPNLLMIPVRIDSMVPKLALFA 235
Query: 776 KEHIEASEELFYDY 789
+ I EEL YDY
Sbjct: 236 AKDIVPEEELSYDY 249
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
pdb|4I51|B Chain B, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
Length = 286
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 55/111 (49%), Gaps = 14/111 (12%)
Query: 686 GWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNDQ----YVLDAY 741
GWG + ++ EY GELIS EAD R + S+LFDL+++ Y +DA
Sbjct: 157 GWGVRSLQDIPPGTFVCEYVGELISDSEADVREE------DSYLFDLDNKDGEVYCIDAR 210
Query: 742 RKGDKLKFANHSSNPNCF-AKVMLVAGD---HRVGIFAKEHIEASEELFYD 788
G+ +F NH PN +V + D R+ F+ IEA E+L +D
Sbjct: 211 FYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFD 261
>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam
pdb|4IJ8|B Chain B, Crystal Structure Of The Complex Of Setd8 With Sam
Length = 165
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 683 DVAGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRANSS----FLFD-LNDQYV 737
D G G S+ D++ EY G+LI +A KR +Y + S+ + F L+ Y
Sbjct: 37 DGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYC 96
Query: 738 LDAYRKGDKL-KFANHSSNPNCFAKVMLVAGDHRVGIFAKEHIEASEELFYDY 789
+DA R+ ++L + NHS + NC K+ + G + + A I A EEL YDY
Sbjct: 97 VDATRETNRLGRLINHSKSGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDY 149
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|B Chain B, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|C Chain C, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|D Chain D, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
Length = 167
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 683 DVAGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRANSS----FLFD-LNDQYV 737
D G G S+ D++ EY G+LI +A KR +Y + S+ + F L+ Y
Sbjct: 39 DGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYC 98
Query: 738 LDAYRKGDKL-KFANHSSNPNCFAKVMLVAGDHRVGIFAKEHIEASEELFYDY 789
+DA R+ ++L + NHS NC K+ + G + + A I A EEL YDY
Sbjct: 99 VDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDY 151
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
pdb|2BQZ|E Chain E, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
Length = 161
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 683 DVAGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRANSS----FLFD-LNDQYV 737
D G G S+ D++ EY G+LI +A KR +Y + S+ + F L+ Y
Sbjct: 33 DGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYC 92
Query: 738 LDAYRKGDKL-KFANHSSNPNCFAKVMLVAGDHRVGIFAKEHIEASEELFYDY 789
+DA R+ ++L + NHS NC K+ + G + + A I A EEL YDY
Sbjct: 93 VDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDY 145
>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
Length = 166
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 683 DVAGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRANSS----FLFD-LNDQYV 737
D G G S+ D++ E+ G+LI +A KR +Y + S+ + F L+ Y
Sbjct: 38 DGKGRGVIATKQFSRGDFVVEFHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYC 97
Query: 738 LDAYRKGDKL-KFANHSSNPNCFAKVMLVAGDHRVGIFAKEHIEASEELFYDY 789
+DA R+ ++L + NHS NC K+ + G + + A I A EEL YDY
Sbjct: 98 VDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDY 150
>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9X|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9Y|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
pdb|3F9Y|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
Length = 166
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 683 DVAGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRANSS----FLFD-LNDQYV 737
D G G S+ D++ EY G+LI +A KR +Y + S+ + F L+ Y
Sbjct: 38 DGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYC 97
Query: 738 LDAYRKGDKL-KFANHSSNPNCFAKVMLVAGDHRVGIFAKEHIEASEELFYDY 789
+DA R+ ++L + NHS NC K+ + G + + A I A EEL +DY
Sbjct: 98 VDATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLFDY 150
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
Histone Lysine Methyltransferase
pdb|1PEG|A Chain A, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|B Chain B, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
Length = 302
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 57/131 (43%), Gaps = 28/131 (21%)
Query: 686 GWGAFLKNSVSKNDYLGEYTGELISHREADKRG--KIYDRANSSFLFDLN---DQYVLDA 740
GWG ++ + ++ Y GE+I+ EAD+R R +LF L+ D LD
Sbjct: 144 GWGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAESTIARRKDVYLFALDKFSDPDSLDP 203
Query: 741 YRKGDKL-----------KFANHSSNPN--CFAKVMLVAGDHR------VGIFAKEHIEA 781
G L +F NHS +PN FA+V GDH + +FA + I
Sbjct: 204 LLAGQPLEVDGEYMSGPTRFINHSCDPNMAIFARV----GDHADKHIHDLALFAIKDIPK 259
Query: 782 SEELFYDYRYG 792
EL +DY G
Sbjct: 260 GTELTFDYVNG 270
>pdb|1XQH|A Chain A, Crystal Structure Of A Ternary Complex Of The
Methyltransferase Set9 (Also Known As Set79) WITH A P53
Peptide And Sah
pdb|1XQH|E Chain E, Crystal Structure Of A Ternary Complex Of The
Methyltransferase Set9 (Also Known As Set79) WITH A P53
Peptide And Sah
Length = 264
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 58/135 (42%), Gaps = 21/135 (15%)
Query: 685 AGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNDQYVLDAYRKG 744
AG G F K +V N + Y G I+H+E D R D A + L+++ V+D
Sbjct: 124 AGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSR----DWALNGNTLSLDEETVIDVPEPY 179
Query: 745 DKL-KF-------ANHSSNPNCFAKVMLVAGDHRVG----IFAKEHIEASEELFYDYRYG 792
+ + K+ ANHS PNC + + R G I +EA EEL Y Y
Sbjct: 180 NHVSKYCASLGHKANHSFTPNCIYDMFV---HPRFGPIKCIRTLRAVEADEELTVAYGY- 235
Query: 793 PDQAPAWARKPEGSK 807
D +P PE +
Sbjct: 236 -DHSPPGKSGPEAPE 249
>pdb|3CBM|A Chain A, Set79-Er-Adomet Complex
pdb|3CBO|A Chain A, Set7/9-er-adohcy Complex
pdb|3CBP|A Chain A, Set7/9-er-sinefungin Complex
pdb|3OS5|A Chain A, Set79-Dnmt1 K142me1 Complex
Length = 256
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 58/135 (42%), Gaps = 21/135 (15%)
Query: 685 AGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNDQYVLDAYRKG 744
AG G F K +V N + Y G I+H+E D R D A + L+++ V+D
Sbjct: 116 AGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSR----DWALNGNTLSLDEETVIDVPEPY 171
Query: 745 DKL-KF-------ANHSSNPNCFAKVMLVAGDHRVG----IFAKEHIEASEELFYDYRYG 792
+ + K+ ANHS PNC + + R G I +EA EEL Y Y
Sbjct: 172 NHVSKYCASLGHKANHSFTPNCIYDMFV---HPRFGPIKCIRTLRAVEADEELTVAYGY- 227
Query: 793 PDQAPAWARKPEGSK 807
D +P PE +
Sbjct: 228 -DHSPPGKSGPEAPE 241
>pdb|1O9S|A Chain A, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Set79
pdb|1O9S|B Chain B, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Set79
Length = 259
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 58/135 (42%), Gaps = 21/135 (15%)
Query: 685 AGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNDQYVLDAYRKG 744
AG G F K +V N + Y G I+H+E D R D A + L+++ V+D
Sbjct: 119 AGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSR----DWALNGNTLSLDEETVIDVPEPY 174
Query: 745 DKL-KF-------ANHSSNPNCFAKVMLVAGDHRVG----IFAKEHIEASEELFYDYRYG 792
+ + K+ ANHS PNC + + R G I +EA EEL Y Y
Sbjct: 175 NHVSKYCASLGHKANHSFTPNCIYDMFV---HPRFGPIKCIRTLRAVEADEELTVAYGY- 230
Query: 793 PDQAPAWARKPEGSK 807
D +P PE +
Sbjct: 231 -DHSPPGKSGPEAPE 244
>pdb|2F69|A Chain A, Ternary Complex Of Set79 BOUND TO ADOHCY AND A TAF10
Peptide
pdb|3M53|A Chain A, Set79 IN COMPLEX WITH TAF10 PEPTIDE AND ADOHCY
Length = 261
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 58/135 (42%), Gaps = 21/135 (15%)
Query: 685 AGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNDQYVLDAYRKG 744
AG G F K +V N + Y G I+H+E D R D A + L+++ V+D
Sbjct: 121 AGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSR----DWALNGNTLSLDEETVIDVPEPY 176
Query: 745 DKL-KF-------ANHSSNPNCFAKVMLVAGDHRVG----IFAKEHIEASEELFYDYRYG 792
+ + K+ ANHS PNC + + R G I +EA EEL Y Y
Sbjct: 177 NHVSKYCASLGHKANHSFTPNCIYDMFV---HPRFGPIKCIRTLRAVEADEELTVAYGY- 232
Query: 793 PDQAPAWARKPEGSK 807
D +P PE +
Sbjct: 233 -DHSPPGKSGPEAPE 246
>pdb|4E47|A Chain A, Set79 IN COMPLEX WITH INHIBITOR
(R)-(3-(3-Cyanophenyl)-1-Oxo-1-
(Pyrrolidin-1-Yl)propan-2-Yl)-1,2,3,
4-Tetrahydroisoquinoline-6- Sulfonamide And
S-Adenosylmethionine
pdb|4E47|B Chain B, Set79 IN COMPLEX WITH INHIBITOR
(R)-(3-(3-Cyanophenyl)-1-Oxo-1-
(Pyrrolidin-1-Yl)propan-2-Yl)-1,2,3,
4-Tetrahydroisoquinoline-6- Sulfonamide And
S-Adenosylmethionine
pdb|4E47|C Chain C, Set79 IN COMPLEX WITH INHIBITOR
(R)-(3-(3-Cyanophenyl)-1-Oxo-1-
(Pyrrolidin-1-Yl)propan-2-Yl)-1,2,3,
4-Tetrahydroisoquinoline-6- Sulfonamide And
S-Adenosylmethionine
pdb|4E47|D Chain D, Set79 IN COMPLEX WITH INHIBITOR
(R)-(3-(3-Cyanophenyl)-1-Oxo-1-
(Pyrrolidin-1-Yl)propan-2-Yl)-1,2,3,
4-Tetrahydroisoquinoline-6- Sulfonamide And
S-Adenosylmethionine
Length = 264
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 58/135 (42%), Gaps = 21/135 (15%)
Query: 685 AGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNDQYVLDAYRKG 744
AG G F K +V N + Y G I+H+E D R D A + L+++ V+D
Sbjct: 118 AGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSR----DWALNGNTLSLDEETVIDVPEPY 173
Query: 745 DKL-KF-------ANHSSNPNCFAKVMLVAGDHRVG----IFAKEHIEASEELFYDYRYG 792
+ + K+ ANHS PNC + + R G I +EA EEL Y Y
Sbjct: 174 NHVSKYCASLGHKANHSFTPNCIYDMFV---HPRFGPIKCIRTLRAVEADEELTVAYGY- 229
Query: 793 PDQAPAWARKPEGSK 807
D +P PE +
Sbjct: 230 -DHSPPGKSGPEAPE 243
>pdb|3M54|A Chain A, Set79 Y305F IN COMPLEX WITH TAF10 PEPTIDE AND ADOHCY
pdb|3M55|A Chain A, Set79 Y305F IN COMPLEX WITH TAF10-K189me1 Peptide And
Adohcy
pdb|3M56|A Chain A, Set79 Y305F IN COMPLEX WITH TAF10-K189me2 Peptide And
Adohcy
Length = 261
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 58/135 (42%), Gaps = 21/135 (15%)
Query: 685 AGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNDQYVLDAYRKG 744
AG G F K +V N + Y G I+H+E D R D A + L+++ V+D
Sbjct: 121 AGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSR----DWALNGNTLSLDEETVIDVPEPY 176
Query: 745 DKL-KF-------ANHSSNPNCFAKVMLVAGDHRVG----IFAKEHIEASEELFYDYRYG 792
+ + K+ ANHS PNC + + R G I +EA EEL Y Y
Sbjct: 177 NHVSKYCASLGHKANHSFTPNCIFDMFV---HPRFGPIKCIRTLRAVEADEELTVAYGY- 232
Query: 793 PDQAPAWARKPEGSK 807
D +P PE +
Sbjct: 233 -DHSPPGKSGPEAPE 246
>pdb|1N6C|A Chain A, Structure Of Set79
Length = 297
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 58/135 (42%), Gaps = 21/135 (15%)
Query: 685 AGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNDQYVLDAYRKG 744
AG G F K +V N + Y G I+H+E D R D A + L+++ V+D
Sbjct: 157 AGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSR----DWALNGNTLSLDEETVIDVPEPY 212
Query: 745 DKL-KF-------ANHSSNPNCFAKVMLVAGDHRVG----IFAKEHIEASEELFYDYRYG 792
+ + K+ ANHS PNC + + R G I +EA EEL Y Y
Sbjct: 213 NHVSKYCASLGHKANHSFTPNCIYDMFV---HPRFGPIKCIRTLRAVEADEELTVAYGY- 268
Query: 793 PDQAPAWARKPEGSK 807
D +P PE +
Sbjct: 269 -DHSPPGKSGPEAPE 282
>pdb|1N6A|A Chain A, Structure Of Set7/9
Length = 259
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 56/135 (41%), Gaps = 21/135 (15%)
Query: 685 AGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNDQYVLDAYRKG 744
AG G F K +V N Y G I+H+E D R D A + L+++ V+D
Sbjct: 119 AGEGLFSKVAVGPNTVXSFYNGVRITHQEVDSR----DWALNGNTLSLDEETVIDVPEPY 174
Query: 745 DKL-KF-------ANHSSNPNCFAKVMLVAGDHRVG----IFAKEHIEASEELFYDYRYG 792
+ + K+ ANHS PNC + R G I +EA EEL Y Y
Sbjct: 175 NHVSKYCASLGHKANHSFTPNCIYDXFV---HPRFGPIKCIRTLRAVEADEELTVAYGY- 230
Query: 793 PDQAPAWARKPEGSK 807
D +P PE +
Sbjct: 231 -DHSPPGKSGPEAPE 244
>pdb|3M57|A Chain A, Set79 Y245A IN COMPLEX WITH TAF10 PEPTIDE AND ADOHCY
pdb|3M58|A Chain A, Set79 Y245A IN COMPLEX WITH TAF10-K189me1 Peptide And
Adohcy
pdb|3M59|A Chain A, Set79 Y245A IN COMPLEX WITH TAF10-K189me2 Peptide And
Adohcy
pdb|3M5A|A Chain A, Set79 Y245A IN COMPLEX WITH TAF10-K189me3 Peptide And
Adohcy
Length = 261
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 57/135 (42%), Gaps = 21/135 (15%)
Query: 685 AGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNDQYVLDAYRKG 744
AG G F K +V N + G I+H+E D R D A + L+++ V+D
Sbjct: 121 AGEGLFSKVAVGPNTVMSFANGVRITHQEVDSR----DWALNGNTLSLDEETVIDVPEPY 176
Query: 745 DKL-KF-------ANHSSNPNCFAKVMLVAGDHRVG----IFAKEHIEASEELFYDYRYG 792
+ + K+ ANHS PNC + + R G I +EA EEL Y Y
Sbjct: 177 NHVSKYCASLGHKANHSFTPNCIYDMFV---HPRFGPIKCIRTLRAVEADEELTVAYGY- 232
Query: 793 PDQAPAWARKPEGSK 807
D +P PE +
Sbjct: 233 -DHSPPGKSGPEAPE 246
>pdb|1H3I|A Chain A, Crystal Structure Of The Histone Methyltransferase Set79
pdb|1H3I|B Chain B, Crystal Structure Of The Histone Methyltransferase Set79
Length = 293
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 55/125 (44%), Gaps = 21/125 (16%)
Query: 685 AGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNDQYVLDAYRKG 744
AG G F K +V N + Y G I+H+E D R D A + L+++ V+D
Sbjct: 175 AGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSR----DWALNGNTLSLDEETVIDVPEPY 230
Query: 745 DKL-KF-------ANHSSNPNCFAKVMLVAGDHRVG----IFAKEHIEASEELFYDYRYG 792
+ + K+ ANHS PNC + + R G I +EA EEL YG
Sbjct: 231 NHVSKYCASLGHKANHSFTPNCIYDMFV---HPRFGPIKCIRTLRAVEADEEL--TVAYG 285
Query: 793 PDQAP 797
D +P
Sbjct: 286 YDHSP 290
>pdb|1MT6|A Chain A, Structure Of Histone H3 K4-Specific Methyltransferase
Set79 WITH ADOHCY
Length = 280
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 19/119 (15%)
Query: 685 AGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNDQYVLDAYRKG 744
AG G F K +V N + Y G I+H+E D R D A + L+++ V+D
Sbjct: 169 AGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSR----DWALNGNTLSLDEETVIDVPEPY 224
Query: 745 DKL-KF-------ANHSSNPNCFAKVMLVAGDHRVG----IFAKEHIEASEELFYDYRY 791
+ + K+ ANHS PNC + + R G I +EA EEL Y Y
Sbjct: 225 NHVSKYCASLGHKANHSFTPNCIYDMFV---HPRFGPIKCIRTLRAVEADEELTVAYGY 280
>pdb|1MUF|A Chain A, Structure Of Histone H3 K4-Specific Methyltransferase
Set79
Length = 257
Score = 35.8 bits (81), Expect = 0.088, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 19/119 (15%)
Query: 685 AGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNDQYVLDAYRKG 744
AG G F K +V N Y G I+H+E D R D A + L+++ V+D
Sbjct: 146 AGEGLFSKVAVGPNTVXSFYNGVRITHQEVDSR----DWALNGNTLSLDEETVIDVPEPY 201
Query: 745 DKL-KF-------ANHSSNPNCFAKVMLVAGDHRVG----IFAKEHIEASEELFYDYRY 791
+ + K+ ANHS PNC + R G I +EA EEL Y Y
Sbjct: 202 NHVSKYCASLGHKANHSFTPNCIYDXFV---HPRFGPIKCIRTLRAVEADEELTVAYGY 257
>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp
pdb|3KX2|A Chain A, Crystal Structure Of Prp43p In Complex With Adp
Length = 767
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 332 ENTDTSMQSLGKRKALELN----DSVKVFDEIEESLN--------KKQKKLLPLDVLTAS 379
+N + ++ L R LELN +S K FD I ++L KK+ + +
Sbjct: 617 DNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKALASGFFMQVAKKRSGAKGYITVKDN 676
Query: 380 SDGIPRPDTKSGHHVGAINDNELQMTSKNTIKKSVSAK 417
D + P T GH + NE +TSKN I+ S +
Sbjct: 677 QDVLIHPSTVLGHDAEWVIYNEFVLTSKNYIRTVTSVR 714
>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
pdb|2XAU|B Chain B, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
Length = 773
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 332 ENTDTSMQSLGKRKALELN----DSVKVFDEIEESLN--------KKQKKLLPLDVLTAS 379
+N + ++ L R LELN +S K FD I ++L KK+ + +
Sbjct: 617 DNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKALASGFFMQVAKKRSGAKGYITVKDN 676
Query: 380 SDGIPRPDTKSGHHVGAINDNELQMTSKNTIKKSVSAK 417
D + P T GH + NE +TSKN I+ S +
Sbjct: 677 QDVLIHPSTVLGHDAEWVIYNEFVLTSKNYIRTVTSVR 714
>pdb|1OWS|A Chain A, Crystal Structure Of A C49 Phospholipase A2 From Indian
Cobra Reveals Carbohydrate Binding In The Hydrophobic
Channel
Length = 118
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 10/68 (14%)
Query: 580 GCQSMCGKQCPCLHNGTCCEKYCGCSKS------CKNRFRG----CHCAKSQCRSRQCPC 629
GC CG P CC+ +C C + C+ +F+ C C+ C
Sbjct: 25 GCYCGCGSGTPTDDLDRCCQVHCNCYRQAGEISGCRPKFKTYTYQCSGGTLTCKGNNNAC 84
Query: 630 FAAGRECD 637
A+ +CD
Sbjct: 85 AASSCDCD 92
>pdb|1Y75|A Chain A, A New Form Of Catalytically Inactive Phospholipase A2 With
An Unusual Disulphide Bridge Cys 32- Cys 49 Reveals
Recognition For N- Acetylglucosmine
Length = 118
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 10/68 (14%)
Query: 580 GCQSMCGKQCPCLHNGTCCEKYCGCSKS------CKNRFRG----CHCAKSQCRSRQCPC 629
GC CG P CC+ +C C + C+ +F+ C C+ C
Sbjct: 25 GCYCGCGSGTPVDDLDRCCQVHCNCYRQAGEISGCRPKFKTYTYECSGGTLTCKGDNNAC 84
Query: 630 FAAGRECD 637
A+ +CD
Sbjct: 85 AASSCDCD 92
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 29.6 bits (65), Expect = 7.6, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 459 EWKPIEKELYLKGVEIFGRNSCLIARNLLSGLKTCMEVSTYMR 501
+W EKEL+ +G+ FGR I++ L G +T ++V +Y R
Sbjct: 11 KWTIEEKELFEQGLAKFGRRWTKISK--LIGSRTVLQVKSYAR 51
>pdb|1PU6|A Chain A, Crystal Structure Of H.Pylori 3-Methyladenine Dna
Glycosylase (Magiii)
pdb|1PU6|B Chain B, Crystal Structure Of H.Pylori 3-Methyladenine Dna
Glycosylase (Magiii)
pdb|1PU7|A Chain A, Crystal Structure Of H.pylori 3-methyladenine Dna
Glycosylase (magiii) Bound To 3,9-dimethyladenine
pdb|1PU7|B Chain B, Crystal Structure Of H.pylori 3-methyladenine Dna
Glycosylase (magiii) Bound To 3,9-dimethyladenine
pdb|1PU8|A Chain A, Crystal Structure Of H.Pylori 3-Methyladenine Dna
Glycosylase (Magiii) Bound To 1,N6-Ethenoadenine
pdb|1PU8|B Chain B, Crystal Structure Of H.Pylori 3-Methyladenine Dna
Glycosylase (Magiii) Bound To 1,N6-Ethenoadenine
Length = 218
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 188 VFEEHGLGEEVINAVSQFIGIATSEVQDRYSTLKEKYDGKNLKEFEDAGH--ERGIALEK 245
+ ++ G+G+E +A+ + V D+YS L K G ++++++ H E+G+ ++
Sbjct: 123 LLDQKGIGKESADAILCYACAKEVMVVDKYSYLFLKKLGIEIEDYDELQHFFEKGV--QE 180
Query: 246 SLSAALDSFDN 256
+L++AL ++N
Sbjct: 181 NLNSALALYEN 191
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 590 PCLHNGTCCEKYCGCSKSCKNRFRGCHC--AKSQC 622
PCLHNG+C + G + +C + G +C AK++C
Sbjct: 12 PCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNEC 46
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,219,254
Number of Sequences: 62578
Number of extensions: 940969
Number of successful extensions: 2546
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 2421
Number of HSP's gapped (non-prelim): 104
length of query: 824
length of database: 14,973,337
effective HSP length: 107
effective length of query: 717
effective length of database: 8,277,491
effective search space: 5934961047
effective search space used: 5934961047
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 56 (26.2 bits)