Query 003377
Match_columns 824
No_of_seqs 382 out of 1517
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 22:21:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003377.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003377hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1079 Transcriptional repres 100.0 8E-121 2E-125 1021.0 27.0 681 21-820 36-739 (739)
2 KOG4442 Clathrin coat binding 100.0 1.1E-43 2.4E-48 402.3 14.3 189 575-807 64-257 (729)
3 KOG1080 Histone H3 (Lys4) meth 100.0 6.5E-31 1.4E-35 314.4 10.7 134 674-807 865-1002(1005)
4 KOG1082 Histone H3 (Lys9) meth 99.9 3.6E-28 7.7E-33 268.0 12.1 140 643-792 154-322 (364)
5 smart00317 SET SET (Su(var)3-9 99.9 8.9E-24 1.9E-28 191.0 11.5 113 677-789 2-116 (116)
6 KOG1083 Putative transcription 99.9 8.5E-25 1.8E-29 255.3 6.1 132 663-794 1165-1298(1306)
7 KOG1085 Predicted methyltransf 99.8 1.5E-18 3.3E-23 181.8 8.4 123 670-792 251-379 (392)
8 KOG1141 Predicted histone meth 99.7 4.4E-17 9.6E-22 187.3 10.1 73 736-808 1179-1260(1262)
9 COG2940 Proteins containing SE 99.6 6.6E-16 1.4E-20 176.5 2.8 143 664-806 321-476 (480)
10 PF00856 SET: SET domain; Int 99.5 3.3E-14 7.2E-19 133.5 5.2 105 686-790 1-162 (162)
11 KOG1081 Transcription factor N 98.9 3.7E-10 8E-15 129.0 2.1 115 662-792 301-417 (463)
12 KOG2589 Histone tail methylase 98.5 5.5E-08 1.2E-12 106.2 4.1 114 685-804 137-254 (453)
13 KOG2461 Transcription factor B 98.1 2.9E-06 6.4E-11 95.6 6.0 108 673-792 26-145 (396)
14 KOG1141 Predicted histone meth 97.6 1.7E-05 3.7E-10 93.6 0.9 75 634-717 767-841 (1262)
15 PF00249 Myb_DNA-binding: Myb- 93.3 0.097 2.1E-06 41.9 3.6 46 174-221 1-48 (48)
16 smart00717 SANT SANT SWI3, AD 93.2 0.067 1.5E-06 41.1 2.5 47 174-222 1-48 (49)
17 PF13921 Myb_DNA-bind_6: Myb-l 93.2 0.071 1.5E-06 44.3 2.7 43 177-222 1-45 (60)
18 smart00717 SANT SANT SWI3, AD 92.5 0.31 6.8E-06 37.3 5.3 43 458-502 2-45 (49)
19 cd00167 SANT 'SWI3, ADA2, N-Co 92.4 0.32 6.9E-06 36.8 5.1 41 459-501 1-42 (45)
20 KOG1171 Metallothionein-like p 91.5 0.043 9.2E-07 62.4 -0.9 62 576-638 131-243 (406)
21 KOG4442 Clathrin coat binding 90.4 0.31 6.7E-06 58.5 4.8 35 584-618 83-120 (729)
22 smart00570 AWS associated with 90.2 0.11 2.5E-06 43.1 0.8 11 663-673 40-50 (51)
23 cd00167 SANT 'SWI3, ADA2, N-Co 90.0 0.24 5.2E-06 37.5 2.4 43 176-220 1-44 (45)
24 PF09111 SLIDE: SLIDE; InterP 88.9 0.3 6.5E-06 47.1 2.7 49 174-222 49-111 (118)
25 PF03638 TCR: Tesmin/TSO1-like 87.3 0.31 6.8E-06 39.0 1.4 28 612-639 3-30 (42)
26 PF00249 Myb_DNA-binding: Myb- 81.0 4.4 9.4E-05 32.4 5.5 43 458-501 2-45 (48)
27 KOG1337 N-methyltransferase [G 79.4 1.3 2.8E-05 51.6 2.8 40 749-791 239-278 (472)
28 smart00570 AWS associated with 78.4 0.78 1.7E-05 38.2 0.4 8 606-613 20-27 (51)
29 PF05033 Pre-SET: Pre-SET moti 78.3 1.3 2.8E-05 40.7 1.9 37 575-611 45-103 (103)
30 PF05033 Pre-SET: Pre-SET moti 77.6 1.7 3.6E-05 40.0 2.3 47 610-667 44-103 (103)
31 PF03638 TCR: Tesmin/TSO1-like 76.6 1.5 3.2E-05 35.3 1.5 37 575-612 2-40 (42)
32 PF13921 Myb_DNA-bind_6: Myb-l 74.8 6.4 0.00014 32.6 4.9 41 460-502 1-41 (60)
33 KOG2084 Predicted histone tail 68.3 6.1 0.00013 44.7 4.5 38 749-790 208-246 (482)
34 TIGR01557 myb_SHAQKYF myb-like 63.1 18 0.00039 30.7 5.2 44 458-502 4-52 (57)
35 PLN03091 hypothetical protein; 61.8 7.5 0.00016 45.2 3.6 54 168-224 61-115 (459)
36 PLN03212 Transcription repress 61.0 8.7 0.00019 41.6 3.7 53 168-223 72-125 (249)
37 PF14774 FAM177: FAM177 family 58.5 15 0.00032 36.0 4.5 66 143-211 18-97 (123)
38 KOG1082 Histone H3 (Lys9) meth 56.2 8.3 0.00018 43.7 2.7 42 573-614 104-171 (364)
39 PLN03212 Transcription repress 52.5 12 0.00025 40.7 2.9 46 174-221 25-72 (249)
40 COG5259 RSC8 RSC chromatin rem 45.6 20 0.00042 42.1 3.5 43 456-500 278-321 (531)
41 KOG3813 Uncharacterized conser 44.7 11 0.00023 44.5 1.3 21 576-596 307-328 (640)
42 PLN03142 Probable chromatin-re 43.1 21 0.00046 45.9 3.7 48 174-221 926-984 (1033)
43 KOG1081 Transcription factor N 38.5 10 0.00022 44.6 -0.0 106 683-790 121-242 (463)
44 PF08271 TF_Zn_Ribbon: TFIIB z 34.3 47 0.001 26.2 3.1 33 144-177 7-43 (43)
45 KOG4167 Predicted DNA-binding 33.6 48 0.001 41.0 4.4 41 457-499 619-659 (907)
46 PF00856 SET: SET domain; Int 31.2 27 0.00059 32.5 1.5 17 771-787 2-18 (162)
47 KOG1079 Transcriptional repres 29.8 28 0.0006 42.5 1.6 28 28-55 19-51 (739)
48 PF08666 SAF: SAF domain; Int 28.5 32 0.00069 28.4 1.4 15 772-786 3-17 (63)
49 KOG0457 Histone acetyltransfer 28.4 82 0.0018 36.9 4.9 40 457-498 72-112 (438)
50 PLN03091 hypothetical protein; 27.8 40 0.00087 39.5 2.4 47 173-221 13-61 (459)
51 TIGR02726 phenyl_P_delta pheny 27.5 36 0.00078 34.6 1.8 49 147-195 22-74 (169)
52 KOG1338 Uncharacterized conser 26.1 46 0.00099 38.6 2.4 44 745-794 217-263 (466)
53 KOG3813 Uncharacterized conser 24.4 34 0.00073 40.6 1.0 29 622-650 316-348 (640)
54 PF14100 PmoA: Methane oxygena 22.8 70 0.0015 35.0 3.0 43 748-791 204-252 (271)
55 smart00760 Bac_DnaA_C Bacteria 22.0 75 0.0016 26.7 2.4 21 196-216 3-23 (60)
56 PRK05988 formate dehydrogenase 20.6 1E+02 0.0023 31.1 3.5 40 183-222 27-70 (156)
57 KOG3988 Protein-tyrosine sulfo 20.4 67 0.0015 35.9 2.2 21 186-206 122-143 (378)
58 cd00150 PlantTI Plant trypsin 20.2 69 0.0015 23.7 1.5 20 576-595 5-24 (27)
59 smart00286 PTI Plant trypsin i 20.1 71 0.0015 23.9 1.6 20 576-595 7-26 (29)
60 PRK09430 djlA Dna-J like membr 20.1 98 0.0021 33.9 3.4 49 176-224 145-228 (267)
No 1
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=100.00 E-value=8.1e-121 Score=1020.99 Aligned_cols=681 Identities=35% Similarity=0.535 Sum_probs=530.5
Q ss_pred cCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhccccchhhhccCCCCCc-------CCccccCCC
Q 003377 21 NDGLGNLTYKLNQLKKQVQAERVVSVKDKIEKNRKKIENDISQLLSTTSRKSVIFAMDNGFGNM-------PLCKYSGFP 93 (824)
Q Consensus 21 ~~~~~~L~~~i~~lKkqi~~~R~~~ik~k~e~n~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~-------~l~~~~g~~ 93 (824)
++.++.+...+..+|+ ++..++.+++++-..++.+...||+-+- +++.+ ........+++ |++++||+.
T Consensus 36 ~~~~e~i~~~~~E~k~-~~~~~~~~~~~~~~~~r~k~~~~~~~~~-~~~~~--~~i~~~n~~~~v~~~~~~~~~q~nfmv 111 (739)
T KOG1079|consen 36 ADRLEKIKILNCEWKK-RRLKPVRSAKEVDGDIRVKVDLDTSIFD-FPSQK--SPINELNAVAQVPIMYSWPPLQQNFMV 111 (739)
T ss_pred HHHHHHHHHHHHHHhh-hhcccccccccccccccccccccccccc-Ccccc--cchhhhcccccccccccCChhhhccee
Confidence 3456666666666666 8888888888888888888888888875 55552 22222222222 999999999
Q ss_pred CCCCCCCCccccccccccccccccCCCCCCCceeEEeeccccccccccccccceeeEeCCCCeEEEeCCCccccCCCccc
Q 003377 94 QGLGDRDYVNSHEVVLSTSSKLSHVQKIPPYTTWIFLDKNQRMAEDQSVVGRRRIYYDQHGSEALVCSDSEEDIIEPEEE 173 (824)
Q Consensus 94 ~~~~d~d~~~~~~v~~~~~iklp~v~klPpYTtWifldrNqrMaedqsvvgrrriYyd~~g~EalicSdseee~~e~eee 173 (824)
++..+.+++...++. +..||+|++|.|+|||+|||+||||||++||+|||+|+||| |.|||++| ||+||| ++++||
T Consensus 112 ~~~~~~~~ip~~~~~-v~~~k~~~ieel~~y~~~v~~dr~~~~~~d~v~ve~~~a~~-Q~~~e~dg-~D~~~e-~~~~~e 187 (739)
T KOG1079|consen 112 EDETVLHNIPYMGDE-VLDIKGPFIEELIKYDGKVHGDRNQRFMEDQVFVELVVALY-QYGGEHDG-SDDEEE-EVLEEE 187 (739)
T ss_pred cccceeccccccccc-ccccccchhhhcccccceeeccccccchhhhhHHHHHHHHH-hcCCcccc-CCCccc-cchhhh
Confidence 999999988887754 67899999999999999999999999999999999999999 99999999 999999 889999
Q ss_pred cccCCcccch-hhhhhHhhcCCcHHHHHHHHHHhC--CCchHHHHHHHHhHhhcCCCCcccccccccccccchhhh-hhh
Q 003377 174 KHEFSDGEDR-ILWTVFEEHGLGEEVINAVSQFIG--IATSEVQDRYSTLKEKYDGKNLKEFEDAGHERGIALEKS-LSA 249 (824)
Q Consensus 174 K~eF~e~eD~-ii~m~~qe~Gls~~Vl~~l~q~~~--~~~seI~eRy~~L~~k~~~~~~~~~~~~~~~~~~~l~K~-l~a 249 (824)
|++|.|+||. |+|++.+.+++++.|+.++++++. ++++||++||.+|+++. ....+.........++.+++. +.+
T Consensus 188 kr~~~e~~~~~~~~~~~~~~~~~~~if~~~~~~f~~k~~~~~lke~~~~l~~~~-~p~~~e~~~~~~id~~~ae~~~r~~ 266 (739)
T KOG1079|consen 188 KRDFLEGEDDDIIESINKLSFPADKIFQAISSMFPDKLTASELKERYGELTSKS-LPVAEEPECTPNIDGSSAEPVQREQ 266 (739)
T ss_pred cccccCcccchhhHhhhhhccchHHHHHHHhhhcccccchhhhhHHHhhhhhcc-ccccCCcccccCCCccccChHHHHh
Confidence 9999999999 899999999999999999999998 99999999999999863 232333332334567788888 999
Q ss_pred hhhcccccccccccccc-----CCcccccCCCCCCCCCcCCCCCcc----ceeeeccCCccccccccccCCCccCCCccc
Q 003377 250 ALDSFDNLFCRRCLSRA-----VQDTVEGSAGNISSIITNTEGTLL----HCNAEVPGAHSDIMAGERCNSKRVLPVTSE 320 (824)
Q Consensus 250 aLDSFDNLFCRRCLvFD-----sQ~li~p~e~~kq~~~~~~~~~~~----~Cy~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (824)
||||||||||||||+|| ||.++||.+ +.-.|.++-.... .||..+.+.....+ +.
T Consensus 267 ~l~sF~tlfCrrCl~ydC~lHg~~~~~~pn~--~~r~e~~~a~~~~pc~p~~~~~l~~~~~~~m--------------~~ 330 (739)
T KOG1079|consen 267 ALHSFHTLFCRRCLKYDCFLHGSQFHAFPNT--KKRKEDEPALENEPCGPGCYGLLEGAKEKTM--------------SA 330 (739)
T ss_pred hhcccccceeeeeeeeeccccCccccccccc--cccCCCCccccccCCCCchhhhhhccchhhh--------------hc
Confidence 99999999999999999 899999999 8888998775333 99988644321000 00
Q ss_pred cccCcccccCCCCCCccccccccchhhcccCccchhhHHHHHHHHHhhhccccccccccCCCCCCCCCCCCCcccccccc
Q 003377 321 AVDSSEVAIGNENTDTSMQSLGKRKALELNDSVKVFDEIEESLNKKQKKLLPLDVLTASSDGIPRPDTKSGHHVGAINDN 400 (824)
Q Consensus 321 ~~~ss~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 400 (824)
++ +.. .++++ .++||..-..++++... +. ..++....+
T Consensus 331 ~~-~~~------------~p~~g--------------------~~~qk~~~~~~~~s~~~--~~-------~~e~~g~~~ 368 (739)
T KOG1079|consen 331 VV-SKC------------PPIRG--------------------DIRQKLVKASSMDSDDE--HV-------EEEDKGHDD 368 (739)
T ss_pred cc-ccC------------CCCcc--------------------hhhhhhcccccCCcchh--hc-------cccccCccc
Confidence 00 000 00110 02233222222211111 00 001111111
Q ss_pred ccccccccccccccccccccccccccccccCCccCCCCcccccCCCCCCCccccccCCCCcHHHHHHHHHhhhhcCCchH
Q 003377 401 ELQMTSKNTIKKSVSAKVVSHNNIEHNIMDGAKDVNKEPEMKQSFSKGELPEGVLCSSEWKPIEKELYLKGVEIFGRNSC 480 (824)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~E~~l~~k~v~~fg~N~C 480 (824)
+....++..-..+. + ...++.........+.++...... ...+|+++|+.||++++.+||.|+|
T Consensus 369 d~~v~~~~~~~~~~----v---~~~~~~~~s~~~~~c~~~~~~~~~---------~~~ew~~~ek~~fr~~~~~~~~n~c 432 (739)
T KOG1079|consen 369 DDGVPRGFGGSVNF----V---GEDDTSTHSSTNSICQNPVHGKKD---------TNVEWNGAEKVLFRVGSTLYGTNRC 432 (739)
T ss_pred cccccccccccccc----c---cCCcccccccccccccCcccccCC---------cccccchhhhHHHHhccccccchhh
Confidence 11111110000000 0 001111111222222222111111 3568999999999999999999999
Q ss_pred HHHHhhhCCCCcHHHHHHHHHhcCCCCCCCCCCCCccccccccccchhhhhcCCCchHHHhhhhcccccccccCCCCCCc
Q 003377 481 LIARNLLSGLKTCMEVSTYMRDSSSSMPHKSVAPSSFLEETVKVDTDYAEQEMPARPRLLRRRGRARKLKYSWKSAGHPS 560 (824)
Q Consensus 481 ~iA~~ll~g~KTC~EV~~ym~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~r~~r~~~r~rklk~~~ks~~~p~ 560 (824)
+|||+| ++|||++||+||..+..... +.... .......+.|++.+|+.|+.|+..+.|+++.|+.
T Consensus 433 ~Iar~l--~~ktC~~v~~~~~~e~~~~~--------~~~~~-----~~~~~~~~~r~~~~r~~g~~r~k~q~kk~~~~~~ 497 (739)
T KOG1079|consen 433 SIARNL--LTKTCRQVYEYEQKEVLQGL--------YFDGR-----FRVELPGPKRARKLRLWGRHRRKIQNKKDSRHTV 497 (739)
T ss_pred HHHHHh--cchHHHHHHHHhhcchhhce--------ecccc-----cccccCcchhhHHHHhhhhHHHhhhcccccCCce
Confidence 999999 45999999999997653211 11100 0001233456888999999999999999999977
Q ss_pred cchhcccCCccCCccccCCCCCCCC--CCCCcccCCCcccCCCCCCCcccccccCCcccCCCCccCCCcccccccCccCc
Q 003377 561 IWKRIADGKNQSCKQYTPCGCQSMC--GKQCPCLHNGTCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDP 638 (824)
Q Consensus 561 ~~kri~~~k~~~~~~y~PC~c~~~C--~~~C~C~~~g~~Ce~~CgC~~~C~nRf~GC~C~~~~C~t~~CpC~~a~rECdP 638 (824)
+|. |+||+|+++| +.+|+|+.++++||++|+|+.+|.|||+||+| ++||++++|||++|.|||||
T Consensus 498 v~~------------~qpC~hp~~c~c~~~C~C~~n~~~CEk~C~C~~dC~nrF~GC~C-k~QC~tkqCpC~~A~rECdP 564 (739)
T KOG1079|consen 498 VWN------------YQPCDHPGPCNCGVGCPCIDNETFCEKFCYCSPDCRNRFPGCRC-KAQCNTKQCPCYLAVRECDP 564 (739)
T ss_pred eee------------cCcccCCCCCCCCCCCcccccCcchhhcccCCHHHHhcCCCCCc-ccccccCcCchhhhccccCc
Confidence 764 7777777555 68999999999999999999999999999999 99999999999999999999
Q ss_pred ccCCCCcccCCCCCCCCCCCCCCC-CCCchhhhhcccccEEEEecCCCCcceeeccccCCCCeeeeecccccCHHHHHHH
Q 003377 639 DVCRNCWVSCGDGSLGEPPKRGDG-QCGNMRLLLRQQQRILLAKSDVAGWGAFLKNSVSKNDYLGEYTGELISHREADKR 717 (824)
Q Consensus 639 d~C~~C~~sCg~g~l~~p~~~~~~-~C~N~~lqrg~~~~l~V~kS~~kG~GLfA~edI~kGefI~EY~GEIIs~~Ea~~R 717 (824)
++|..||+ | +..++.. .|+|+.+|++++++|.|++|.+.|||||+++.+.|++||.||+||+|+++||++|
T Consensus 565 d~Cl~cg~-~-------~~~d~~~~~C~N~~l~~~~qkr~llapSdVaGwGlFlKe~v~KnefisEY~GE~IS~dEADrR 636 (739)
T KOG1079|consen 565 DVCLMCGN-V-------DHFDSSKISCKNTNLQRGEQKRVLLAPSDVAGWGLFLKESVSKNEFISEYTGEIISHDEADRR 636 (739)
T ss_pred hHHhccCc-c-------cccccCccccccchhhhhhhcceeechhhccccceeeccccCCCceeeeecceeccchhhhhc
Confidence 99999986 1 2233444 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCcccccCCCcEEEeccccCCccccccCCCCCCcceeEEEEcCeeEEEEEEccCCCCCCeEEEecCCCCCCCC
Q 003377 718 GKIYDRANSSFLFDLNDQYVLDAYRKGDKLKFANHSSNPNCFAKVMLVAGDHRVGIFAKEHIEASEELFYDYRYGPDQAP 797 (824)
Q Consensus 718 ~k~yd~~~~sYlf~L~~~~~IDA~~~GN~aRFINHSC~PNc~~~~v~V~G~~rI~~fA~RDI~aGEELTfDYgy~~d~~p 797 (824)
+++||..+.+|+|+|+.+++|||+++||.+||+|||-+|||++++++|+|++||||||+|+|.+||||||||+|+++.++
T Consensus 637 GkiYDr~~cSflFnln~dyviDs~rkGnk~rFANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYrYs~~~~~ 716 (739)
T KOG1079|consen 637 GKIYDRYMCSFLFNLNNDYVIDSTRKGNKIRFANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYRYSPEHAL 716 (739)
T ss_pred ccccccccceeeeeccccceEeeeeecchhhhccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeeccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCcccccccc
Q 003377 798 AWARKPEGSKREDSSVSQGRAKK 820 (824)
Q Consensus 798 cwCg~pe~~k~d~~~~s~gra~k 820 (824)
-|-+.+..+++++....+.+++|
T Consensus 717 k~~~~~~~s~k~e~~~~q~~~~~ 739 (739)
T KOG1079|consen 717 KFVGIERESYKVELKIFQATQQK 739 (739)
T ss_pred cccccCccccccchhhhhhhcCC
Confidence 99999999999998888888775
No 2
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-43 Score=402.28 Aligned_cols=189 Identities=31% Similarity=0.601 Sum_probs=170.3
Q ss_pred cccCCCCCCCCCCCCcccCCCcccCCCCCCCcccccccCCcccCCCCccCCCcccccccCccCcccCCCCcccCCCCCCC
Q 003377 575 QYTPCGCQSMCGKQCPCLHNGTCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGSLG 654 (824)
Q Consensus 575 ~y~PC~c~~~C~~~C~C~~~g~~Ce~~CgC~~~C~nRf~GC~C~~~~C~t~~CpC~~a~rECdPd~C~~C~~sCg~g~l~ 654 (824)
..+-|+|...-+. --...|.|+.+|.||+. ..||.++.|..|++
T Consensus 64 ~~m~Cdc~~~~~d---------~~n~~~~cg~~CiNr~t-------------------~iECs~~~C~~cg~-------- 107 (729)
T KOG4442|consen 64 DEMICDCKPKTGD---------GANGACACGEDCINRMT-------------------SIECSDRECPRCGV-------- 107 (729)
T ss_pred cceeeeccccccc---------ccccccccCccccchhh-------------------hcccCCccCCCccc--------
Confidence 5667777643221 12467999999999986 46788888887643
Q ss_pred CCCCCCCCCCCchhhhhcccccEEEEecCCCCcceeeccccCCCCeeeeecccccCHHHHHHHhhhhcccC--CcccccC
Q 003377 655 EPPKRGDGQCGNMRLLLRQQQRILLAKSDVAGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRAN--SSFLFDL 732 (824)
Q Consensus 655 ~p~~~~~~~C~N~~lqrg~~~~l~V~kS~~kG~GLfA~edI~kGefI~EY~GEIIs~~Ea~~R~k~yd~~~--~sYlf~L 732 (824)
.|+|++||+.++.+|+||.+..+||||+|.++|++|+||+||+||||+..|+++|.+.|+..+ ++|+|.|
T Consensus 108 --------~C~NQRFQkkqyA~vevF~Te~KG~GLRA~~dI~~g~FI~EY~GEVI~~~Ef~kR~~~Y~~d~~kh~Yfm~L 179 (729)
T KOG4442|consen 108 --------YCKNQRFQKKQYAKVEVFLTEKKGCGLRAEEDIPKGQFILEYIGEVIEEKEFEKRVKRYAKDGIKHYYFMAL 179 (729)
T ss_pred --------cccchhhhhhccCceeEEEecCcccceeeccccCCCcEEeeeccccccHHHHHHHHHHHHhcCCceEEEEEe
Confidence 799999999999999999999999999999999999999999999999999999999999875 5788899
Q ss_pred CCcEEEeccccCCccccccCCCCCCcceeEEEEcCeeEEEEEEccCCCCCCeEEEecC---CCCCCCCcccCCCCCCC
Q 003377 733 NDQYVLDAYRKGDKLKFANHSSNPNCFAKVMLVAGDHRVGIFAKEHIEASEELFYDYR---YGPDQAPAWARKPEGSK 807 (824)
Q Consensus 733 ~~~~~IDA~~~GN~aRFINHSC~PNc~~~~v~V~G~~rI~~fA~RDI~aGEELTfDYg---y~~d~~pcwCg~pe~~k 807 (824)
....+||||.+||++|||||||+|||+++.|+|.|..||||||.|.|.+||||||||+ |+.+.++|+||.++|+.
T Consensus 180 ~~~e~IDAT~KGnlaRFiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYqf~rYGr~AQ~CyCgeanC~G 257 (729)
T KOG4442|consen 180 QGGEYIDATKKGNLARFINHSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQFDRYGRDAQPCYCGEANCRG 257 (729)
T ss_pred cCCceecccccCcHHHhhcCCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEecccccccccccccccCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999995 78899999999999983
No 3
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=6.5e-31 Score=314.39 Aligned_cols=134 Identities=40% Similarity=0.755 Sum_probs=127.1
Q ss_pred cccEEEEecCCCCcceeeccccCCCCeeeeecccccCHHHHHHHhhhhcccC--CcccccCCCcEEEeccccCCcccccc
Q 003377 674 QQRILLAKSDVAGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRAN--SSFLFDLNDQYVLDAYRKGDKLKFAN 751 (824)
Q Consensus 674 ~~~l~V~kS~~kG~GLfA~edI~kGefI~EY~GEIIs~~Ea~~R~k~yd~~~--~sYlf~L~~~~~IDA~~~GN~aRFIN 751 (824)
.++|..+++.+|||||||+++|.+|++|+||+||+|.+.-|+.|+..|...+ .+|||.++...||||+.+||+|||||
T Consensus 865 kk~~~F~~s~iH~wglfa~~~i~~~dmViEY~Ge~vR~~iad~RE~~Y~~~gi~~sYlfrid~~~ViDAtk~gniAr~In 944 (1005)
T KOG1080|consen 865 KKYVKFGRSGIHGWGLFAMENIAAGDMVIEYRGELVRSSIADLREARYERMGIGDSYLFRIDDEVVVDATKKGNIARFIN 944 (1005)
T ss_pred hhhhccccccccccceeeccCccccceEEEeeceehhhhHHHHHHHHHhccCcccceeeecccceEEeccccCchhheee
Confidence 3458899999999999999999999999999999999999999999999875 79999999999999999999999999
Q ss_pred CCCCCCcceeEEEEcCeeEEEEEEccCCCCCCeEEEecCCCC--CCCCcccCCCCCCC
Q 003377 752 HSSNPNCFAKVMLVAGDHRVGIFAKEHIEASEELFYDYRYGP--DQAPAWARKPEGSK 807 (824)
Q Consensus 752 HSC~PNc~~~~v~V~G~~rI~~fA~RDI~aGEELTfDYgy~~--d~~pcwCg~pe~~k 807 (824)
|||+|||+++++.|+|+.+|+|||.|+|.+||||||||.|.. +..||+||.|+|++
T Consensus 945 HsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYkF~~e~~kipClCgap~Crg 1002 (1005)
T KOG1080|consen 945 HSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYKFPTEDDKIPCLCGAPNCRG 1002 (1005)
T ss_pred cccCCCceeeEEEecCeeEEEEEEecccccCceeeeeccccccccccccccCCCcccc
Confidence 999999999999999999999999999999999999999854 45799999999985
No 4
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=3.6e-28 Score=268.03 Aligned_cols=140 Identities=26% Similarity=0.482 Sum_probs=119.0
Q ss_pred CCcccCCCCCCCCCCCCCCCCCCchhhhhcccccEEEEecCCCCcceeeccccCCCCeeeeecccccCHHHHHHHhhhhc
Q 003377 643 NCWVSCGDGSLGEPPKRGDGQCGNMRLLLRQQQRILLAKSDVAGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYD 722 (824)
Q Consensus 643 ~C~~sCg~g~l~~p~~~~~~~C~N~~lqrg~~~~l~V~kS~~kG~GLfA~edI~kGefI~EY~GEIIs~~Ea~~R~k~yd 722 (824)
+|+..|+|+ ..|.|+.+|.+.+.+|+|++++.+||||++.+.|++|+||+||+||+++..++++|...++
T Consensus 154 EC~~~C~C~----------~~C~nRv~q~g~~~~leIfrt~~kGwgvRs~~~I~~G~fvcEyaGe~~t~~e~~~~~~~~~ 223 (364)
T KOG1082|consen 154 ECSVACGCH----------PDCANRVVQKGLQFHLEVFRTPEKGWGVRTLDPIPAGEFVCEYAGEVLTSEEAQRRTHLRE 223 (364)
T ss_pred ccccCCCCC----------CcCcchhhccccccceEEEecCCceeeecccccccCCCeeEEEeeEecChHHhhhcccccc
Confidence 577778875 5899999999999999999999999999999999999999999999999999998843332
Q ss_pred cc----CCcccc---------------------cCCCcEEEeccccCCccccccCCCCCCcceeEEEEcCe----eEEEE
Q 003377 723 RA----NSSFLF---------------------DLNDQYVLDAYRKGDKLKFANHSSNPNCFAKVMLVAGD----HRVGI 773 (824)
Q Consensus 723 ~~----~~sYlf---------------------~L~~~~~IDA~~~GN~aRFINHSC~PNc~~~~v~V~G~----~rI~~ 773 (824)
.. +..+.+ .....+.|||...||++|||||||.||+.+..+..++. .+|+|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ida~~~GNv~RfinHSC~PN~~~~~v~~~~~~~~~~~i~f 303 (364)
T KOG1082|consen 224 YLDDDCDAYSIADREWVDESPVGNTFVAPSLPGGPGRELLIDAKPHGNVARFINHSCSPNLLYQAVFQDEFVLLYLRIGF 303 (364)
T ss_pred ccccccccchhhhccccccccccccccccccccCCCcceEEchhhcccccccccCCCCccceeeeeeecCCccchheeee
Confidence 21 111111 12345999999999999999999999999988887743 59999
Q ss_pred EEccCCCCCCeEEEecCCC
Q 003377 774 FAKEHIEASEELFYDYRYG 792 (824)
Q Consensus 774 fA~RDI~aGEELTfDYgy~ 792 (824)
||+++|.||||||||||..
T Consensus 304 fa~~~I~p~~ELT~dYg~~ 322 (364)
T KOG1082|consen 304 FALRDISPGEELTLDYGKA 322 (364)
T ss_pred eeccccCCCcccchhhccc
Confidence 9999999999999999965
No 5
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=99.90 E-value=8.9e-24 Score=191.02 Aligned_cols=113 Identities=41% Similarity=0.736 Sum_probs=102.7
Q ss_pred EEEEecCCCCcceeeccccCCCCeeeeecccccCHHHHHHHhhhhcccC--CcccccCCCcEEEeccccCCccccccCCC
Q 003377 677 ILLAKSDVAGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRAN--SSFLFDLNDQYVLDAYRKGDKLKFANHSS 754 (824)
Q Consensus 677 l~V~kS~~kG~GLfA~edI~kGefI~EY~GEIIs~~Ea~~R~k~yd~~~--~sYlf~L~~~~~IDA~~~GN~aRFINHSC 754 (824)
++++.++.+|+||||+.+|++|++|++|.|.++...++..+...|.... ..|+|.+...++||+...||++|||||||
T Consensus 2 ~~~~~~~~~G~gl~a~~~i~~g~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~iNHsc 81 (116)
T smart00317 2 LEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERSKAYDTDGADSFYLFEIDSDLCIDARRKGNIARFINHSC 81 (116)
T ss_pred cEEEecCCCcEEEEECCccCCCCEEEEEEeEEECHHHHHHHHHHHHhcCCCCEEEEECCCCEEEeCCccCcHHHeeCCCC
Confidence 5677888999999999999999999999999999998888765555554 38899988889999999999999999999
Q ss_pred CCCcceeEEEEcCeeEEEEEEccCCCCCCeEEEec
Q 003377 755 NPNCFAKVMLVAGDHRVGIFAKEHIEASEELFYDY 789 (824)
Q Consensus 755 ~PNc~~~~v~V~G~~rI~~fA~RDI~aGEELTfDY 789 (824)
.|||.+..+..++..+|.|+|+|||++|||||+||
T Consensus 82 ~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 82 EPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred CCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 99999998888888899999999999999999999
No 6
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=99.90 E-value=8.5e-25 Score=255.32 Aligned_cols=132 Identities=29% Similarity=0.572 Sum_probs=123.6
Q ss_pred CCCchhhhh-cccccEEEEecCCCCcceeeccccCCCCeeeeecccccCHHHHHHH-hhhhcccCCcccccCCCcEEEec
Q 003377 663 QCGNMRLLL-RQQQRILLAKSDVAGWGAFLKNSVSKNDYLGEYTGELISHREADKR-GKIYDRANSSFLFDLNDQYVLDA 740 (824)
Q Consensus 663 ~C~N~~lqr-g~~~~l~V~kS~~kG~GLfA~edI~kGefI~EY~GEIIs~~Ea~~R-~k~yd~~~~sYlf~L~~~~~IDA 740 (824)
.|.|+++++ +..++|.|++.+.+||||.|+++|++|+||+||+||||+..+++.| +..|.....+|+..+..+.+||+
T Consensus 1165 ~c~nqrm~r~e~cp~L~v~~gp~~G~~v~tk~PikagtfI~EYvGeVit~ke~e~~mmtl~~~d~~~~cL~I~p~l~id~ 1244 (1306)
T KOG1083|consen 1165 SCSNQRMQRHEECPPLEVFRGPKKGWGVRTKEPIKAGTFIMEYVGEVITEKEFEPRMMTLYHNDDDHYCLVIDPGLFIDI 1244 (1306)
T ss_pred hhhhHHhhhhccCCCcceeccCCCCccccccccccccchHHHHHHHHHHHHhhcccccccCCCCCcccccccCccccCCh
Confidence 478888886 4678899999999999999999999999999999999999999988 66788888999999999999999
Q ss_pred cccCCccccccCCCCCCcceeEEEEcCeeEEEEEEccCCCCCCeEEEecCCCCC
Q 003377 741 YRKGDKLKFANHSSNPNCFAKVMLVAGDHRVGIFAKEHIEASEELFYDYRYGPD 794 (824)
Q Consensus 741 ~~~GN~aRFINHSC~PNc~~~~v~V~G~~rI~~fA~RDI~aGEELTfDYgy~~d 794 (824)
.++||.+||+||+|.|||.++.|.|+|..||++||+|||.+||||||||++...
T Consensus 1245 ~R~~n~~RfinhscKPNc~~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN~ks~ 1298 (1306)
T KOG1083|consen 1245 PRMGNGARFINHSCKPNCEMQKWSVNGEYRVGLFALRDLPKGEELTYDYNFKSF 1298 (1306)
T ss_pred hhccccccccccccCCCCccccccccceeeeeeeecCCCCCCceEEEecccccc
Confidence 999999999999999999999999999999999999999999999999976543
No 7
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=99.75 E-value=1.5e-18 Score=181.75 Aligned_cols=123 Identities=28% Similarity=0.424 Sum_probs=108.1
Q ss_pred hhcccccEEEEecCCCCcceeeccccCCCCeeeeecccccCHHHHHHHhhhhcccCC----ccccc-CCCcEEEecccc-
Q 003377 670 LLRQQQRILLAKSDVAGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRANS----SFLFD-LNDQYVLDAYRK- 743 (824)
Q Consensus 670 qrg~~~~l~V~kS~~kG~GLfA~edI~kGefI~EY~GEIIs~~Ea~~R~k~yd~~~~----sYlf~-L~~~~~IDA~~~- 743 (824)
..+....+.+..-.++|.||+|+..+.+|+||.||.|.+|.-.|+..|+..|..... .|+|. ++..|+|||+.-
T Consensus 251 l~g~~egl~~~~~dgKGRGv~a~~~F~rgdFVVEY~Gdliei~eAk~rE~~Ya~De~~GcYMYyF~h~sk~yCiDAT~et 330 (392)
T KOG1085|consen 251 LKGTNEGLLEVYKDGKGRGVRAKVNFERGDFVVEYRGDLIEISEAKVREEQYANDEEIGCYMYYFEHNSKKYCIDATKET 330 (392)
T ss_pred HhccccceeEEeeccccceeEeecccccCceEEEEecceeeechHHHHHHHhccCcccceEEEeeeccCeeeeeeccccc
Confidence 345556777887888999999999999999999999999999999999999976632 35554 567799999976
Q ss_pred CCccccccCCCCCCcceeEEEEcCeeEEEEEEccCCCCCCeEEEecCCC
Q 003377 744 GDKLKFANHSSNPNCFAKVMLVAGDHRVGIFAKEHIEASEELFYDYRYG 792 (824)
Q Consensus 744 GN~aRFINHSC~PNc~~~~v~V~G~~rI~~fA~RDI~aGEELTfDYgy~ 792 (824)
+-++|.||||--+||..+++.++|.+++.++|.|||.+||||+||||-.
T Consensus 331 ~~lGRLINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDR 379 (392)
T KOG1085|consen 331 PWLGRLINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYGDR 379 (392)
T ss_pred ccchhhhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhcccc
Confidence 5578999999999999999999999999999999999999999999843
No 8
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=99.69 E-value=4.4e-17 Score=187.31 Aligned_cols=73 Identities=30% Similarity=0.517 Sum_probs=66.0
Q ss_pred EEEeccccCCccccccCCCCCCcceeEEEEcCe----eEEEEEEccCCCCCCeEEEecCCCCCC-----CCcccCCCCCC
Q 003377 736 YVLDAYRKGDKLKFANHSSNPNCFAKVMLVAGD----HRVGIFAKEHIEASEELFYDYRYGPDQ-----APAWARKPEGS 806 (824)
Q Consensus 736 ~~IDA~~~GN~aRFINHSC~PNc~~~~v~V~G~----~rI~~fA~RDI~aGEELTfDYgy~~d~-----~pcwCg~pe~~ 806 (824)
|+|||...||++||+||||.||+.++.++|+.. +.|+|||.+-|+||+||||||+|..++ ..|.||.-+|+
T Consensus 1179 yvIDAk~eGNlGRfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~g~v~~keL~C~CGa~~Cr 1258 (1262)
T KOG1141|consen 1179 YVIDAKQEGNLGRFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQGQVATKELTCHCGAENCR 1258 (1262)
T ss_pred EEEecccccchhhhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeeccccccccccceEEEecChhhhh
Confidence 899999999999999999999999999999753 679999999999999999999997654 46999988887
Q ss_pred CC
Q 003377 807 KR 808 (824)
Q Consensus 807 k~ 808 (824)
++
T Consensus 1259 gr 1260 (1262)
T KOG1141|consen 1259 GR 1260 (1262)
T ss_pred cc
Confidence 54
No 9
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=99.57 E-value=6.6e-16 Score=176.50 Aligned_cols=143 Identities=32% Similarity=0.503 Sum_probs=115.3
Q ss_pred CCchhhhhcccccEEEEecCCCCcceeeccccCCCCeeeeecccccCHHHHHHHhhhhcccCCcccc-cCCC-cEEEecc
Q 003377 664 CGNMRLLLRQQQRILLAKSDVAGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRANSSFLF-DLND-QYVLDAY 741 (824)
Q Consensus 664 C~N~~lqrg~~~~l~V~kS~~kG~GLfA~edI~kGefI~EY~GEIIs~~Ea~~R~k~yd~~~~sYlf-~L~~-~~~IDA~ 741 (824)
+.|..-.........+..+...|||+||.+.|++|++|.+|.|+++...++..|...|...+..+.| .+.. ..++|+.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~g~fa~~~i~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 400 (480)
T COG2940 321 LLNSNGCKKRREPNVVQESEIKGYGVFALESIKKGEFIIEYHGEIIRRKEAREREENYDLLGNEFSFGLLEDKDKVRDSQ 400 (480)
T ss_pred hhhhcccccccchhhhhhhcccccceeehhhccchHHHHHhcCcccchHHHHhhhccccccccccchhhccccchhhhhh
Confidence 3333333444556667788889999999999999999999999999999999998877555554444 3333 7899999
Q ss_pred ccCCccccccCCCCCCcceeEEEEcCeeEEEEEEccCCCCCCeEEEecCCCCCC-----------CCcccCCCCCC
Q 003377 742 RKGDKLKFANHSSNPNCFAKVMLVAGDHRVGIFAKEHIEASEELFYDYRYGPDQ-----------APAWARKPEGS 806 (824)
Q Consensus 742 ~~GN~aRFINHSC~PNc~~~~v~V~G~~rI~~fA~RDI~aGEELTfDYgy~~d~-----------~pcwCg~pe~~ 806 (824)
..|+.+||+||||.|||.+....+.|..++.++|+|||.+||||++||+...+. .+|-|+.+.++
T Consensus 401 ~~g~~~r~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (480)
T COG2940 401 KAGDVARFINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPSLEDNRELKKLLEKRWGCACGEDRCS 476 (480)
T ss_pred hcccccceeecCCCCCcceecccccccceeeecccccchhhhhhccccccccccchhhhhhhhhhhccccCCCccC
Confidence 999999999999999999988888888899999999999999999999864432 34556655544
No 10
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.47 E-value=3.3e-14 Score=133.47 Aligned_cols=105 Identities=17% Similarity=0.187 Sum_probs=74.1
Q ss_pred CcceeeccccCCCCeeeeecccccCHHHHHHH---hhhhccc--------------------------------------
Q 003377 686 GWGAFLKNSVSKNDYLGEYTGELISHREADKR---GKIYDRA-------------------------------------- 724 (824)
Q Consensus 686 G~GLfA~edI~kGefI~EY~GEIIs~~Ea~~R---~k~yd~~-------------------------------------- 724 (824)
|+||||+++|++|++|+++.+.+++..+.... ...+...
T Consensus 1 GrGl~At~dI~~Ge~I~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF00856_consen 1 GRGLFATRDIKAGEVILIPRPAILTPDEVSPQPELLRLQLSKALEEQSRSDFSIQKKQKAEKSERSPQLESLHSISLRSE 80 (162)
T ss_dssp SEEEEESS-B-TTEEEEEESEEEEEHHHHHCHHHHSHHTTCSSSCSHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCHTTT
T ss_pred CEEEEECccCCCCCEEEEECcceEEehhhhhcccchhhhhhhhhcccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999988776441 0000000
Q ss_pred -CC---------------cccccCCCcEEEeccccCCccccccCCCCCCcceeEEEEcCeeEEEEEEccCCCCCCeEEEe
Q 003377 725 -NS---------------SFLFDLNDQYVLDAYRKGDKLKFANHSSNPNCFAKVMLVAGDHRVGIFAKEHIEASEELFYD 788 (824)
Q Consensus 725 -~~---------------sYlf~L~~~~~IDA~~~GN~aRFINHSC~PNc~~~~v~V~G~~rI~~fA~RDI~aGEELTfD 788 (824)
.. ............++......+.|+||||.|||.+......+...+.|+|.|+|++|||||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~is 160 (162)
T PF00856_consen 81 LQFSQAFQWSWFISWTRSDFSSRSFSEDDRDGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFIS 160 (162)
T ss_dssp CCTCCHHHHHHHHHHHHHEEEEEEETTEEEEEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEE
T ss_pred ccccccccchhhccccceeeeccccccccccccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEE
Confidence 00 00001112245566677889999999999999887777677889999999999999999999
Q ss_pred cC
Q 003377 789 YR 790 (824)
Q Consensus 789 Yg 790 (824)
||
T Consensus 161 YG 162 (162)
T PF00856_consen 161 YG 162 (162)
T ss_dssp ST
T ss_pred EC
Confidence 97
No 11
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=98.91 E-value=3.7e-10 Score=129.02 Aligned_cols=115 Identities=30% Similarity=0.458 Sum_probs=92.1
Q ss_pred CCCCchhhhhcccccEEEEecCCCCcceeeccccCCCCeeeeecccccCHHHHHHHhhhhccc--CCcccccCCCcEEEe
Q 003377 662 GQCGNMRLLLRQQQRILLAKSDVAGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRA--NSSFLFDLNDQYVLD 739 (824)
Q Consensus 662 ~~C~N~~lqrg~~~~l~V~kS~~kG~GLfA~edI~kGefI~EY~GEIIs~~Ea~~R~k~yd~~--~~sYlf~L~~~~~ID 739 (824)
..|.|+.+....... . .+ +|..+|.+| +|++|...+...|...-... ...|+..+..+..||
T Consensus 301 ~~~~~~~~sk~~~~e------~-~~---~~~~~~~k~------vg~~i~~~e~~~~~~~~~~~~~~~~~~~~~e~~~~id 364 (463)
T KOG1081|consen 301 ERCHNQQFSKESYPE------P-QK---TAKADIRKG------VGEVIDDKECKARLQRVKESDLVDFYMVFIQKDRIID 364 (463)
T ss_pred cccccchhhhhcccc------c-ch---hhHHhhhcc------cCcccchhhheeehhhhhccchhhhhhhhhhcccccc
Confidence 478888876554443 1 12 889999998 99999999988775433222 223444444444999
Q ss_pred ccccCCccccccCCCCCCcceeEEEEcCeeEEEEEEccCCCCCCeEEEecCCC
Q 003377 740 AYRKGDKLKFANHSSNPNCFAKVMLVAGDHRVGIFAKEHIEASEELFYDYRYG 792 (824)
Q Consensus 740 A~~~GN~aRFINHSC~PNc~~~~v~V~G~~rI~~fA~RDI~aGEELTfDYgy~ 792 (824)
+..+||..||+||||+|||....|.+.+..++++||.+.|++||||||+|.+.
T Consensus 365 ~~~~~n~sr~~nh~~~~~v~~~k~~~~~~t~~~~~a~~~i~~g~e~t~~~n~~ 417 (463)
T KOG1081|consen 365 AGPKGNYSRFLNHSCQPNVETEKWQVIGDTRVGLFAPRQIEAGEELTFNYNGN 417 (463)
T ss_pred cccccchhhhhcccCCCceeechhheecccccccccccccccchhhhheeecc
Confidence 99999999999999999999999999999999999999999999999999865
No 12
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=98.53 E-value=5.5e-08 Score=106.19 Aligned_cols=114 Identities=23% Similarity=0.267 Sum_probs=80.0
Q ss_pred CCcceeeccccCCCCeeeeecccccCHHHHHHHhhhhcccC-CcccccCCCcEEEeccccCCccccccCCCCCCcceeEE
Q 003377 685 AGWGAFLKNSVSKNDYLGEYTGELISHREADKRGKIYDRAN-SSFLFDLNDQYVLDAYRKGDKLKFANHSSNPNCFAKVM 763 (824)
Q Consensus 685 kG~GLfA~edI~kGefI~EY~GEIIs~~Ea~~R~k~yd~~~-~sYlf~L~~~~~IDA~~~GN~aRFINHSC~PNc~~~~v 763 (824)
.|--|.+++.+.+|+=|--.+|-|+...+++++.-.....+ .+-||.-... -|...=..|+||||.|.|||.+
T Consensus 137 ~gAkivst~~w~~ndkIe~LvGcIaeLse~eE~~ll~~g~nDFSvmyStRk~---caqLwLGPaafINHDCrpnCkF--- 210 (453)
T KOG2589|consen 137 NGAKIVSTKSWSRNDKIELLVGCIAELSEAEERSLLRGGGNDFSVMYSTRKR---CAQLWLGPAAFINHDCRPNCKF--- 210 (453)
T ss_pred CCceEEeeccccCCccHHHhhhhhhhcChhhhHHHHhccCCceeeeeecccc---hhhheeccHHhhcCCCCCCcee---
Confidence 46678899999999999999999988888887743332222 2333322111 0111225679999999999954
Q ss_pred EEcCeeEEEEEEccCCCCCCeEEEecC---CCCCCCCcccCCCC
Q 003377 764 LVAGDHRVGIFAKEHIEASEELFYDYR---YGPDQAPAWARKPE 804 (824)
Q Consensus 764 ~V~G~~rI~~fA~RDI~aGEELTfDYg---y~~d~~pcwCg~pe 804 (824)
...|..++.+-++|||+||||||--|| |++...-|.|-.++
T Consensus 211 vs~g~~tacvkvlRDIePGeEITcFYgs~fFG~~N~~CeC~TCE 254 (453)
T KOG2589|consen 211 VSTGRDTACVKVLRDIEPGEEITCFYGSGFFGENNEECECVTCE 254 (453)
T ss_pred ecCCCceeeeehhhcCCCCceeEEeecccccCCCCceeEEeecc
Confidence 235778899999999999999999997 45555556554433
No 13
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=98.13 E-value=2.9e-06 Score=95.65 Aligned_cols=108 Identities=19% Similarity=0.294 Sum_probs=83.3
Q ss_pred ccccEEEEecCC--CCcceeeccccCCCCeeeeecccc-cCHHHHHHHhhhhcccCCcccccCC----CcEEEeccc--c
Q 003377 673 QQQRILLAKSDV--AGWGAFLKNSVSKNDYLGEYTGEL-ISHREADKRGKIYDRANSSFLFDLN----DQYVLDAYR--K 743 (824)
Q Consensus 673 ~~~~l~V~kS~~--kG~GLfA~edI~kGefI~EY~GEI-Is~~Ea~~R~k~yd~~~~sYlf~L~----~~~~IDA~~--~ 743 (824)
....+.|..+.+ .|.||++...|.+|+-.|-|.|++ ++... ...+..|+|.+- ..++||++. .
T Consensus 26 LP~~l~i~~Ssv~~~~lgV~s~~~i~~G~~FGP~~G~~~~~~~~--------~~~n~~y~W~I~~~d~~~~~iDg~d~~~ 97 (396)
T KOG2461|consen 26 LPPELRIKPSSVPVTGLGVWSNASILPGTSFGPFEGEIIASIDS--------KSANNRYMWEIFSSDNGYEYIDGTDEEH 97 (396)
T ss_pred CCCceEeeccccCCccccccccccccCcccccCccCcccccccc--------ccccCcceEEEEeCCCceEEeccCChhh
Confidence 677899998877 788999999999999999999998 22211 123445666542 348999984 6
Q ss_pred CCccccccCCCC---CCcceeEEEEcCeeEEEEEEccCCCCCCeEEEecCCC
Q 003377 744 GDKLKFANHSSN---PNCFAKVMLVAGDHRVGIFAKEHIEASEELFYDYRYG 792 (824)
Q Consensus 744 GN~aRFINHSC~---PNc~~~~v~V~G~~rI~~fA~RDI~aGEELTfDYgy~ 792 (824)
.|+.||+|=+++ -|+.+- .....|.++|+|+|.+||||.++|+-+
T Consensus 98 sNWmRYV~~Ar~~eeQNL~A~----Q~~~~Ifyrt~r~I~p~eELlVWY~~e 145 (396)
T KOG2461|consen 98 SNWMRYVNSARSEEEQNLLAF----QIGENIFYRTIRDIRPNEELLVWYGSE 145 (396)
T ss_pred cceeeeecccCChhhhhHHHH----hccCceEEEecccCCCCCeEEEEeccc
Confidence 899999998885 687652 233468999999999999999999743
No 14
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=97.61 E-value=1.7e-05 Score=93.64 Aligned_cols=75 Identities=23% Similarity=0.343 Sum_probs=62.1
Q ss_pred CccCcccCCCCcccCCCCCCCCCCCCCCCCCCchhhhhcccccEEEEecCCCCcceeeccccCCCCeeeeecccccCHHH
Q 003377 634 RECDPDVCRNCWVSCGDGSLGEPPKRGDGQCGNMRLLLRQQQRILLAKSDVAGWGAFLKNSVSKNDYLGEYTGELISHRE 713 (824)
Q Consensus 634 rECdPd~C~~C~~sCg~g~l~~p~~~~~~~C~N~~lqrg~~~~l~V~kS~~kG~GLfA~edI~kGefI~EY~GEIIs~~E 713 (824)
.||-|.--.+|...|.|. ...|.|+.+|-|.+.++.++++..+|||++...+|.+|.||+-|.|.++++.-
T Consensus 767 ~e~~ptg~yEc~k~ckc~---------~~~C~nrmvqhg~qvRlq~fkt~~kGWg~rclddi~~g~fVciy~g~~l~~~~ 837 (1262)
T KOG1141|consen 767 IEIRPTGPYECLKACKCC---------GPDCLNRMVQHGYQVRLQRFKTIHKGWGRRCLDDITGGNFVCIYPGGALLHQI 837 (1262)
T ss_pred HHhcCCCHHHHHHhhccC---------cHHHHHHHhhcCceeEeeeccccccccceEeeeecCCceEEEEecchhhhhhh
Confidence 355555555666666653 13899999999999999999999999999999999999999999999988776
Q ss_pred HHHH
Q 003377 714 ADKR 717 (824)
Q Consensus 714 a~~R 717 (824)
++.-
T Consensus 838 sdks 841 (1262)
T KOG1141|consen 838 SDKS 841 (1262)
T ss_pred chhh
Confidence 6553
No 15
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=93.34 E-value=0.097 Score=41.95 Aligned_cols=46 Identities=15% Similarity=0.292 Sum_probs=39.2
Q ss_pred cccCCcccchhhhhhHhhcCCcHHHHHHHHHHhC--CCchHHHHHHHHhH
Q 003377 174 KHEFSDGEDRILWTVFEEHGLGEEVINAVSQFIG--IATSEVQDRYSTLK 221 (824)
Q Consensus 174 K~eF~e~eD~ii~m~~qe~Gls~~Vl~~l~q~~~--~~~seI~eRy~~L~ 221 (824)
|..||+.||.+|.-++++||-. -...||+.|+ +++.+++.||..|.
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~--~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKD--NWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTT--HHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCc--HHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 4579999999999999999998 6678888887 99999999998873
No 16
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=93.25 E-value=0.067 Score=41.12 Aligned_cols=47 Identities=17% Similarity=0.383 Sum_probs=39.5
Q ss_pred cccCCcccchhhhhhHhhcCCcHHHHHHHHHHhC-CCchHHHHHHHHhHh
Q 003377 174 KHEFSDGEDRILWTVFEEHGLGEEVINAVSQFIG-IATSEVQDRYSTLKE 222 (824)
Q Consensus 174 K~eF~e~eD~ii~m~~qe~Gls~~Vl~~l~q~~~-~~~seI~eRy~~L~~ 222 (824)
+..||+.||.+|-.++.+||..+ .+.||..|. +++.+|+.||..|..
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~--w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNN--WEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCC--HHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999522 677777776 999999999998764
No 17
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=93.23 E-value=0.071 Score=44.32 Aligned_cols=43 Identities=16% Similarity=0.452 Sum_probs=36.5
Q ss_pred CCcccchhhhhhHhhcCCcHHHHHHHHHHhC-CCchHHHHHHHH-hHh
Q 003377 177 FSDGEDRILWTVFEEHGLGEEVINAVSQFIG-IATSEVQDRYST-LKE 222 (824)
Q Consensus 177 F~e~eD~ii~m~~qe~Gls~~Vl~~l~q~~~-~~~seI~eRy~~-L~~ 222 (824)
||+.||.+|....++||-+ -..||++|+ +++.+|+.||.. |..
T Consensus 1 WT~eEd~~L~~~~~~~g~~---W~~Ia~~l~~Rt~~~~~~r~~~~l~~ 45 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGND---WKKIAEHLGNRTPKQCRNRWRNHLRP 45 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS----HHHHHHHSTTS-HHHHHHHHHHTTST
T ss_pred CCHHHHHHHHHHHHHHCcC---HHHHHHHHCcCCHHHHHHHHHHHCcc
Confidence 6889999999999999963 788999999 999999999999 753
No 18
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=92.47 E-value=0.31 Score=37.34 Aligned_cols=43 Identities=28% Similarity=0.382 Sum_probs=38.5
Q ss_pred CCCcHHHHHHHHHhhhhcC-CchHHHHHhhhCCCCcHHHHHHHHHh
Q 003377 458 SEWKPIEKELYLKGVEIFG-RNSCLIARNLLSGLKTCMEVSTYMRD 502 (824)
Q Consensus 458 ~~W~~~E~~l~~k~v~~fg-~N~C~iA~~ll~g~KTC~EV~~ym~~ 502 (824)
..|++-|..++..++..|| .++..||..| +.+|-.+|..+...
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~--~~rt~~~~~~~~~~ 45 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKEL--PGRTAEQCRERWNN 45 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHc--CCCCHHHHHHHHHH
Confidence 4799999999999999999 9999999987 68999999887653
No 19
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=92.37 E-value=0.32 Score=36.80 Aligned_cols=41 Identities=32% Similarity=0.407 Sum_probs=36.9
Q ss_pred CCcHHHHHHHHHhhhhcC-CchHHHHHhhhCCCCcHHHHHHHHH
Q 003377 459 EWKPIEKELYLKGVEIFG-RNSCLIARNLLSGLKTCMEVSTYMR 501 (824)
Q Consensus 459 ~W~~~E~~l~~k~v~~fg-~N~C~iA~~ll~g~KTC~EV~~ym~ 501 (824)
.||.-|..++..++..|| .+...||+.+ +.||-.+|..|..
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~--~~rs~~~~~~~~~ 42 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKEL--PGRTPKQCRERWR 42 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHc--CCCCHHHHHHHHH
Confidence 499999999999999999 8999999987 6699999988764
No 20
>KOG1171 consensus Metallothionein-like protein [Inorganic ion transport and metabolism]
Probab=91.50 E-value=0.043 Score=62.41 Aligned_cols=62 Identities=37% Similarity=1.012 Sum_probs=51.5
Q ss_pred ccCCCCC-CCCC-CCCcccCCCcccCCCCCCCcccccc------------------------------------------
Q 003377 576 YTPCGCQ-SMCG-KQCPCLHNGTCCEKYCGCSKSCKNR------------------------------------------ 611 (824)
Q Consensus 576 y~PC~c~-~~C~-~~C~C~~~g~~Ce~~CgC~~~C~nR------------------------------------------ 611 (824)
-.+|.|. ..|- -.|.|...|.+|..+|.|- +|.|.
T Consensus 131 k~~~~ck~SkclklYCeCFAsG~yC~~~CnCv-nC~N~~~~e~~r~~a~k~~l~RNP~AFkPKia~s~~~~~da~~~~~~ 209 (406)
T KOG1171|consen 131 KKKCNCKKSKCLKLYCECFASGVYCTGPCNCV-NCFNNPEHESVRLKARKQILERNPNAFKPKIAASSSGIADASEEASK 209 (406)
T ss_pred ccCCCchHHHHHHHhHHHHhhcccccCCccee-eccCCCcchHHHHHHHHHHhhcCccccccccccCCcccchhhhhhhc
Confidence 4466665 5665 4899999999999999998 47664
Q ss_pred -------cCCcccCCCCccCCCcccccccCccCc
Q 003377 612 -------FRGCHCAKSQCRSRQCPCFAAGRECDP 638 (824)
Q Consensus 612 -------f~GC~C~~~~C~t~~CpC~~a~rECdP 638 (824)
-.||+|.+..|..+.|.||.++.-|..
T Consensus 210 ~~~sa~hkkGC~CkkSgClKkYCECyQa~vlCS~ 243 (406)
T KOG1171|consen 210 TPASARHKKGCNCKKSGCLKKYCECYQAGVLCSS 243 (406)
T ss_pred cchhhhhcCCCCCccccchHHHHHHHhcCCCccc
Confidence 279999999999999999999988854
No 21
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.42 E-value=0.31 Score=58.47 Aligned_cols=35 Identities=34% Similarity=0.752 Sum_probs=29.9
Q ss_pred CCCCCCcccCCCcccCC-CCC-CCccccc-ccCCcccC
Q 003377 584 MCGKQCPCLHNGTCCEK-YCG-CSKSCKN-RFRGCHCA 618 (824)
Q Consensus 584 ~C~~~C~C~~~g~~Ce~-~Cg-C~~~C~n-Rf~GC~C~ 618 (824)
.||.+|.|....+.|.. .|. |+..|.| ||+-|.|+
T Consensus 83 ~cg~~CiNr~t~iECs~~~C~~cg~~C~NQRFQkkqyA 120 (729)
T KOG4442|consen 83 ACGEDCINRMTSIECSDRECPRCGVYCKNQRFQKKQYA 120 (729)
T ss_pred ccCccccchhhhcccCCccCCCccccccchhhhhhccC
Confidence 46789999999999999 999 9999988 78766663
No 22
>smart00570 AWS associated with SET domains. subdomain of PRESET
Probab=90.23 E-value=0.11 Score=43.06 Aligned_cols=11 Identities=45% Similarity=0.709 Sum_probs=9.7
Q ss_pred CCCchhhhhcc
Q 003377 663 QCGNMRLLLRQ 673 (824)
Q Consensus 663 ~C~N~~lqrg~ 673 (824)
.|+|++||+++
T Consensus 40 ~C~NqrFqk~~ 50 (51)
T smart00570 40 YCSNQRFQKRQ 50 (51)
T ss_pred CccCcccccCc
Confidence 79999999875
No 23
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=90.03 E-value=0.24 Score=37.46 Aligned_cols=43 Identities=14% Similarity=0.338 Sum_probs=36.9
Q ss_pred cCCcccchhhhhhHhhcCCcHHHHHHHHHHhC-CCchHHHHHHHHh
Q 003377 176 EFSDGEDRILWTVFEEHGLGEEVINAVSQFIG-IATSEVQDRYSTL 220 (824)
Q Consensus 176 eF~e~eD~ii~m~~qe~Gls~~Vl~~l~q~~~-~~~seI~eRy~~L 220 (824)
.||+.||.+|-.++.+||.. -...||++|+ ++..+|+.||..+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~--~w~~Ia~~~~~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKN--NWEKIAKELPGRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcC--CHHHHHhHcCCCCHHHHHHHHHHh
Confidence 38899999999999999952 2678888886 9999999999876
No 24
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=88.94 E-value=0.3 Score=47.09 Aligned_cols=49 Identities=29% Similarity=0.435 Sum_probs=36.4
Q ss_pred cccCCcccchhhhhhHhhcCC-----cHHHHHHHHH---------HhCCCchHHHHHHHHhHh
Q 003377 174 KHEFSDGEDRILWTVFEEHGL-----GEEVINAVSQ---------FIGIATSEVQDRYSTLKE 222 (824)
Q Consensus 174 K~eF~e~eD~ii~m~~qe~Gl-----s~~Vl~~l~q---------~~~~~~seI~eRy~~L~~ 222 (824)
++.||+.||++|=+.+-+||+ =|.+...+.+ |-++|+.||+.|++.|..
T Consensus 49 ~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~ 111 (118)
T PF09111_consen 49 KKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIK 111 (118)
T ss_dssp -SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHH
T ss_pred CCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHH
Confidence 789999999999999999999 2333343333 239999999999999953
No 25
>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin Q9Y4I5 from SWISSPROT [] and TSO1 Q9LE32 from SWISSPROT []. This group of proteins is called a CXC domain in [].
Probab=87.32 E-value=0.31 Score=39.01 Aligned_cols=28 Identities=50% Similarity=1.220 Sum_probs=26.1
Q ss_pred cCCcccCCCCccCCCcccccccCccCcc
Q 003377 612 FRGCHCAKSQCRSRQCPCFAAGRECDPD 639 (824)
Q Consensus 612 f~GC~C~~~~C~t~~CpC~~a~rECdPd 639 (824)
..||.|.++.|....|.||+++..|.+.
T Consensus 3 ~~gC~Ckks~Clk~YC~Cf~~g~~C~~~ 30 (42)
T PF03638_consen 3 KKGCNCKKSKCLKLYCECFQAGRFCTPN 30 (42)
T ss_pred CCCCcccCcChhhhhCHHHHCcCcCCCC
Confidence 5799999999999999999999999986
No 26
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=81.00 E-value=4.4 Score=32.41 Aligned_cols=43 Identities=23% Similarity=0.426 Sum_probs=34.8
Q ss_pred CCCcHHHHHHHHHhhhhcCCc-hHHHHHhhhCCCCcHHHHHHHHH
Q 003377 458 SEWKPIEKELYLKGVEIFGRN-SCLIARNLLSGLKTCMEVSTYMR 501 (824)
Q Consensus 458 ~~W~~~E~~l~~k~v~~fg~N-~C~iA~~ll~g~KTC~EV~~ym~ 501 (824)
..||.-|..+|..++..||.+ .=.||..+ ++.+|=.++-.+..
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~-~~~Rt~~qc~~~~~ 45 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKDNWKKIAKRM-PGGRTAKQCRSRYQ 45 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTTHHHHHHHHH-SSSSTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHHHHHc-CCCCCHHHHHHHHH
Confidence 469999999999999999998 89999877 23899888876543
No 27
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=79.38 E-value=1.3 Score=51.60 Aligned_cols=40 Identities=30% Similarity=0.416 Sum_probs=31.0
Q ss_pred cccCCCCCCcceeEEEEcCeeEEEEEEccCCCCCCeEEEecCC
Q 003377 749 FANHSSNPNCFAKVMLVAGDHRVGIFAKEHIEASEELFYDYRY 791 (824)
Q Consensus 749 FINHSC~PNc~~~~v~V~G~~rI~~fA~RDI~aGEELTfDYgy 791 (824)
+.||++.+ ....+..-+..+.+++.++|.+||||+++||-
T Consensus 239 ~~NH~~~~---~~~~~~~~d~~~~l~~~~~v~~geevfi~YG~ 278 (472)
T KOG1337|consen 239 LLNHSPEV---IKAGYNQEDEAVELVAERDVSAGEEVFINYGP 278 (472)
T ss_pred hhccCchh---ccccccCCCCcEEEEEeeeecCCCeEEEecCC
Confidence 67999998 12233333448899999999999999999973
No 28
>smart00570 AWS associated with SET domains. subdomain of PRESET
Probab=78.40 E-value=0.78 Score=38.24 Aligned_cols=8 Identities=38% Similarity=0.746 Sum_probs=4.0
Q ss_pred cccccccC
Q 003377 606 KSCKNRFR 613 (824)
Q Consensus 606 ~~C~nRf~ 613 (824)
++|.||+.
T Consensus 20 sdClNR~l 27 (51)
T smart00570 20 SDCLNRML 27 (51)
T ss_pred hHHHHHHH
Confidence 44555543
No 29
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=78.29 E-value=1.3 Score=40.68 Aligned_cols=37 Identities=41% Similarity=1.062 Sum_probs=21.0
Q ss_pred cccCCCCCCCC--CCCCcccCCC--------------------cccCCCCCCCcccccc
Q 003377 575 QYTPCGCQSMC--GKQCPCLHNG--------------------TCCEKYCGCSKSCKNR 611 (824)
Q Consensus 575 ~y~PC~c~~~C--~~~C~C~~~g--------------------~~Ce~~CgC~~~C~nR 611 (824)
....|+|.+.| ...|.|.... ..|...|+|+..|.||
T Consensus 45 ~~~~C~C~~~C~~~~~C~C~~~~~~~~~Y~~~g~l~~~~~~~i~EC~~~C~C~~~C~NR 103 (103)
T PF05033_consen 45 FLQGCDCSGDCSNPSNCECLQRNGGIFAYDSNGRLRIPDKPPIFECNDNCGCSPSCRNR 103 (103)
T ss_dssp GTS----SSSSTCTTTSHHHCCTSSS-SB-TTSSBSSSSTSEEE---TTSSS-TTSTT-
T ss_pred cCccCccCCCCCCCCCCcCccccCccccccCCCcCccCCCCeEEeCCCCCCCCCCCCCC
Confidence 45589999889 4689997654 2488888888888886
No 30
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=77.58 E-value=1.7 Score=40.00 Aligned_cols=47 Identities=26% Similarity=0.675 Sum_probs=22.6
Q ss_pred cccCCcccCCCCc-cCCCcccccccCc------------cCcccCCCCcccCCCCCCCCCCCCCCCCCCch
Q 003377 610 NRFRGCHCAKSQC-RSRQCPCFAAGRE------------CDPDVCRNCWVSCGDGSLGEPPKRGDGQCGNM 667 (824)
Q Consensus 610 nRf~GC~C~~~~C-~t~~CpC~~a~rE------------CdPd~C~~C~~sCg~g~l~~p~~~~~~~C~N~ 667 (824)
....||.| .+.| ....|.|...... -.+..-.+|+..|+|+ ..|.||
T Consensus 44 ~~~~~C~C-~~~C~~~~~C~C~~~~~~~~~Y~~~g~l~~~~~~~i~EC~~~C~C~----------~~C~NR 103 (103)
T PF05033_consen 44 EFLQGCDC-SGDCSNPSNCECLQRNGGIFAYDSNGRLRIPDKPPIFECNDNCGCS----------PSCRNR 103 (103)
T ss_dssp GGTS-----SSSSTCTTTSHHHCCTSSS-SB-TTSSBSSSSTSEEE---TTSSS-----------TTSTT-
T ss_pred ccCccCcc-CCCCCCCCCCcCccccCccccccCCCcCccCCCCeEEeCCCCCCCC----------CCCCCC
Confidence 34456666 3446 5566777655433 2344445888888885 379886
No 31
>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin Q9Y4I5 from SWISSPROT [] and TSO1 Q9LE32 from SWISSPROT []. This group of proteins is called a CXC domain in [].
Probab=76.63 E-value=1.5 Score=35.26 Aligned_cols=37 Identities=35% Similarity=0.942 Sum_probs=31.3
Q ss_pred cccCCCCC-CCCC-CCCcccCCCcccCCCCCCCccccccc
Q 003377 575 QYTPCGCQ-SMCG-KQCPCLHNGTCCEKYCGCSKSCKNRF 612 (824)
Q Consensus 575 ~y~PC~c~-~~C~-~~C~C~~~g~~Ce~~CgC~~~C~nRf 612 (824)
+..+|.|. ..|. ..|.|...|.+|...|.|. +|.|..
T Consensus 2 ~~~gC~Ckks~Clk~YC~Cf~~g~~C~~~C~C~-~C~N~~ 40 (42)
T PF03638_consen 2 KKKGCNCKKSKCLKLYCECFQAGRFCTPNCKCQ-NCKNTE 40 (42)
T ss_pred CCCCCcccCcChhhhhCHHHHCcCcCCCCcccC-CCCCcC
Confidence 35689996 8887 5899999999999999995 688864
No 32
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=74.81 E-value=6.4 Score=32.59 Aligned_cols=41 Identities=32% Similarity=0.443 Sum_probs=33.0
Q ss_pred CcHHHHHHHHHhhhhcCCchHHHHHhhhCCCCcHHHHHHHHHh
Q 003377 460 WKPIEKELYLKGVEIFGRNSCLIARNLLSGLKTCMEVSTYMRD 502 (824)
Q Consensus 460 W~~~E~~l~~k~v~~fg~N~C~iA~~ll~g~KTC~EV~~ym~~ 502 (824)
||.-|..++..++..||.+...||..| |.+|=.+|......
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l--~~Rt~~~~~~r~~~ 41 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHL--GNRTPKQCRNRWRN 41 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHS--TTS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHH--CcCCHHHHHHHHHH
Confidence 999999999999999999999999986 67888888765544
No 33
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=68.33 E-value=6.1 Score=44.68 Aligned_cols=38 Identities=32% Similarity=0.496 Sum_probs=28.1
Q ss_pred cccCCCCCCcceeEEEEcCeeEEEEEEccCCCCCC-eEEEecC
Q 003377 749 FANHSSNPNCFAKVMLVAGDHRVGIFAKEHIEASE-ELFYDYR 790 (824)
Q Consensus 749 FINHSC~PNc~~~~v~V~G~~rI~~fA~RDI~aGE-ELTfDYg 790 (824)
++||||.||+. +...+.. ..+++...+.+++ ||+..|-
T Consensus 208 ~~~hsC~pn~~---~~~~~~~-~~~~~~~~~~~~~~~l~~~y~ 246 (482)
T KOG2084|consen 208 LFNHSCFPNIS---VIFDGRG-LALLVPAGIDAGEEELTISYT 246 (482)
T ss_pred hcccCCCCCeE---EEECCce-eEEEeecccCCCCCEEEEeec
Confidence 88999999996 3334444 4466777777776 9999994
No 34
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=63.10 E-value=18 Score=30.72 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=35.7
Q ss_pred CCCcHHHHHHHHHhhhhcCC-ch---HHHHHhhhCCCC-cHHHHHHHHHh
Q 003377 458 SEWKPIEKELYLKGVEIFGR-NS---CLIARNLLSGLK-TCMEVSTYMRD 502 (824)
Q Consensus 458 ~~W~~~E~~l~~k~v~~fg~-N~---C~iA~~ll~g~K-TC~EV~~ym~~ 502 (824)
-.||+-|-..|+.+++.||. +. =.|+.++. .++ |-.+|.++++.
T Consensus 4 ~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~-~~~lT~~qV~SH~QK 52 (57)
T TIGR01557 4 VVWTEDLHDRFLQAVQKLGGPDWATPKRILELMV-VDGLTRDQVASHLQK 52 (57)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcC-CCCCCHHHHHHHHHH
Confidence 46999999999999999998 77 77777653 355 88899887763
No 35
>PLN03091 hypothetical protein; Provisional
Probab=61.84 E-value=7.5 Score=45.19 Aligned_cols=54 Identities=15% Similarity=0.342 Sum_probs=44.6
Q ss_pred CCCccccccCCcccchhhhhhHhhcCCcHHHHHHHHHHh-CCCchHHHHHHHHhHhhc
Q 003377 168 IEPEEEKHEFSDGEDRILWTVFEEHGLGEEVINAVSQFI-GIATSEVQDRYSTLKEKY 224 (824)
Q Consensus 168 ~e~eeeK~eF~e~eD~ii~m~~qe~Gls~~Vl~~l~q~~-~~~~seI~eRy~~L~~k~ 224 (824)
..|.--|..||..||.+|....+++|-. -..||++| ||+.-.||.||..+.+|+
T Consensus 61 LdP~IkKgpWT~EED~lLLeL~k~~GnK---WskIAk~LPGRTDnqIKNRWnslLKKk 115 (459)
T PLN03091 61 LRPDLKRGTFSQQEENLIIELHAVLGNR---WSQIAAQLPGRTDNEIKNLWNSCLKKK 115 (459)
T ss_pred cCCcccCCCCCHHHHHHHHHHHHHhCcc---hHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 4666678899999999999999999953 56677766 999999999999876553
No 36
>PLN03212 Transcription repressor MYB5; Provisional
Probab=61.00 E-value=8.7 Score=41.64 Aligned_cols=53 Identities=15% Similarity=0.303 Sum_probs=43.7
Q ss_pred CCCccccccCCcccchhhhhhHhhcCCcHHHHHHHHHHh-CCCchHHHHHHHHhHhh
Q 003377 168 IEPEEEKHEFSDGEDRILWTVFEEHGLGEEVINAVSQFI-GIATSEVQDRYSTLKEK 223 (824)
Q Consensus 168 ~e~eeeK~eF~e~eD~ii~m~~qe~Gls~~Vl~~l~q~~-~~~~seI~eRy~~L~~k 223 (824)
..|.=-|..||+.||.+|.-..+++|-. -..||++| ||+.-.||.||+.+..+
T Consensus 72 L~P~I~kgpWT~EED~lLlel~~~~GnK---Ws~IAk~LpGRTDnqIKNRWns~LrK 125 (249)
T PLN03212 72 LRPSVKRGGITSDEEDLILRLHRLLGNR---WSLIAGRIPGRTDNEIKNYWNTHLRK 125 (249)
T ss_pred hchhcccCCCChHHHHHHHHHHHhcccc---HHHHHhhcCCCCHHHHHHHHHHHHhH
Confidence 4566678899999999999999999953 56677776 99999999999877654
No 37
>PF14774 FAM177: FAM177 family
Probab=58.53 E-value=15 Score=35.99 Aligned_cols=66 Identities=20% Similarity=0.233 Sum_probs=40.6
Q ss_pred cccceeeEeCCCCeEEE-eCCCccccCCCccccccC----Ccccc--h-------hhhhhHhhcCCcHHHHHHHHHHhCC
Q 003377 143 VGRRRIYYDQHGSEALV-CSDSEEDIIEPEEEKHEF----SDGED--R-------ILWTVFEEHGLGEEVINAVSQFIGI 208 (824)
Q Consensus 143 vgrrriYyd~~g~Eali-cSdseee~~e~eeeK~eF----~e~eD--~-------ii~m~~qe~Gls~~Vl~~l~q~~~~ 208 (824)
.=||-||+ ..||+|- .|..||| .+.++.+.+. .+... . ++|+...=+.--|=|=..||-|||.
T Consensus 18 ~prRiihF--sdGetmEE~StdeEe-~e~d~~~~d~~~~~~dp~~l~w~~~~~~~~~~~~~~~l~~~d~~Ge~lA~~fGi 94 (123)
T PF14774_consen 18 KPRRIIHF--SDGETMEEYSTDEEE-EEQDEDQPDKLSVQVDPSKLTWGPWLWFWAWRVGTKSLSGCDYLGEKLASFFGI 94 (123)
T ss_pred CchheeEe--cCCceeeeecccccc-ccccccccccccccCCcccCCcHHHHHHHHHHHHHhHhhHHhhhhhHHHHHhCC
Confidence 35899999 9998776 6666665 3333333332 22222 1 3344444444455566889999999
Q ss_pred Cch
Q 003377 209 ATS 211 (824)
Q Consensus 209 ~~s 211 (824)
+.+
T Consensus 95 t~~ 97 (123)
T PF14774_consen 95 TSP 97 (123)
T ss_pred Cch
Confidence 987
No 38
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=56.18 E-value=8.3 Score=43.71 Aligned_cols=42 Identities=36% Similarity=0.859 Sum_probs=30.3
Q ss_pred CccccCCCCCCCCCCC----CcccCC----------------------CcccCCCCCCCcccccccCC
Q 003377 573 CKQYTPCGCQSMCGKQ----CPCLHN----------------------GTCCEKYCGCSKSCKNRFRG 614 (824)
Q Consensus 573 ~~~y~PC~c~~~C~~~----C~C~~~----------------------g~~Ce~~CgC~~~C~nRf~G 614 (824)
+..-..|.|...|... |.|... ...|...|+|..+|.||+..
T Consensus 104 ~~~~~~c~C~~~~~~~~~~~C~C~~~n~~~~~~~~~~~~~~~~~~~~~i~EC~~~C~C~~~C~nRv~q 171 (364)
T KOG1082|consen 104 CENSTGCRCCSSCSSVLPLTCLCERHNGGLVAYTCDGDCGTLGKFKEPVFECSVACGCHPDCANRVVQ 171 (364)
T ss_pred CccccCCCccCCCCCCCCccccChHhhCCccccccCCccccccccCccccccccCCCCCCcCcchhhc
Confidence 4456678887666532 888761 24688899999999999863
No 39
>PLN03212 Transcription repressor MYB5; Provisional
Probab=52.53 E-value=12 Score=40.72 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=38.7
Q ss_pred cccCCcccchhhhhhHhhcCCcHHHHHHHHHHh--CCCchHHHHHHHHhH
Q 003377 174 KHEFSDGEDRILWTVFEEHGLGEEVINAVSQFI--GIATSEVQDRYSTLK 221 (824)
Q Consensus 174 K~eF~e~eD~ii~m~~qe~Gls~~Vl~~l~q~~--~~~~seI~eRy~~L~ 221 (824)
|.-||..||.+|..++++||-.. -..||+.+ +|+.-+..+||...-
T Consensus 25 Rg~WT~EEDe~L~~lV~kyG~~n--W~~IAk~~g~gRT~KQCReRW~N~L 72 (249)
T PLN03212 25 RGPWTVEEDEILVSFIKKEGEGR--WRSLPKRAGLLRCGKSCRLRWMNYL 72 (249)
T ss_pred CCCCCHHHHHHHHHHHHHhCccc--HHHHHHhhhcCCCcchHHHHHHHhh
Confidence 56699999999999999999643 56788876 699999999997654
No 40
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=45.63 E-value=20 Score=42.09 Aligned_cols=43 Identities=28% Similarity=0.537 Sum_probs=35.9
Q ss_pred cCCCCcHHHHHHHHHhhhhcCCchHHHHHhhhCCCCcHHH-HHHHH
Q 003377 456 CSSEWKPIEKELYLKGVEIFGRNSCLIARNLLSGLKTCME-VSTYM 500 (824)
Q Consensus 456 ~~~~W~~~E~~l~~k~v~~fg~N~C~iA~~ll~g~KTC~E-V~~ym 500 (824)
....|+.-|.-|++.|+++||..+-.||+++ |+||=-| ++.|+
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygDdW~kVA~HV--gtKt~EqCIl~FL 321 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGDDWDKVARHV--GTKTKEQCILHFL 321 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhhhHHHHHHHh--CCCCHHHHHHHHH
Confidence 4568999999999999999999999999987 8898544 34444
No 41
>KOG3813 consensus Uncharacterized conserved protein (tumor-suppressor AXUD1 in humans) [General function prediction only]
Probab=44.69 E-value=11 Score=44.55 Aligned_cols=21 Identities=29% Similarity=0.999 Sum_probs=13.1
Q ss_pred ccCCCCCCCCC-CCCcccCCCc
Q 003377 576 YTPCGCQSMCG-KQCPCLHNGT 596 (824)
Q Consensus 576 y~PC~c~~~C~-~~C~C~~~g~ 596 (824)
--.|+|.+.|+ ..|.|.+.|.
T Consensus 307 eCGCsCr~~CdPETCaCSqaGI 328 (640)
T KOG3813|consen 307 ECGCSCRGVCDPETCACSQAGI 328 (640)
T ss_pred hhCCcccceeChhhcchhccCc
Confidence 34566666776 4677766665
No 42
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=43.08 E-value=21 Score=45.91 Aligned_cols=48 Identities=21% Similarity=0.296 Sum_probs=37.2
Q ss_pred cccCCcccchhhhhhHhhcCCcH--HHHHHHHHH---------hCCCchHHHHHHHHhH
Q 003377 174 KHEFSDGEDRILWTVFEEHGLGE--EVINAVSQF---------IGIATSEVQDRYSTLK 221 (824)
Q Consensus 174 K~eF~e~eD~ii~m~~qe~Gls~--~Vl~~l~q~---------~~~~~seI~eRy~~L~ 221 (824)
++.|++.||++|=..+..||+.. ++...+.+. -+++|.||+.|+..|.
T Consensus 926 ~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~ 984 (1033)
T PLN03142 926 GKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLI 984 (1033)
T ss_pred CCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHH
Confidence 46799999999999999999854 333333221 2999999999999984
No 43
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=38.48 E-value=10 Score=44.55 Aligned_cols=106 Identities=10% Similarity=-0.012 Sum_probs=70.3
Q ss_pred CCCCcc---eeeccccCCCCeeeeecccccCHH--HHHHHhhhhc-ccCC-cccccCC---CcEEEeccccCCccccccC
Q 003377 683 DVAGWG---AFLKNSVSKNDYLGEYTGELISHR--EADKRGKIYD-RANS-SFLFDLN---DQYVLDAYRKGDKLKFANH 752 (824)
Q Consensus 683 ~~kG~G---LfA~edI~kGefI~EY~GEIIs~~--Ea~~R~k~yd-~~~~-sYlf~L~---~~~~IDA~~~GN~aRFINH 752 (824)
+..+|+ ..|-..+..|++|+.++|+..-.. -...+. +. .... .-+|... .....++...|+..++++|
T Consensus 121 ~~c~~~~~d~~~~~~~~~~~~vw~~vg~~~~~~c~vc~~~~--~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~l~~ 198 (463)
T KOG1081|consen 121 EKCSKRCTDCRAFKKREVGDLVWSKVGEYPWWPCMVCHDPL--LPKGMKHDHVNFFGCYAWTHEKRVFPYEGQSSKLIPH 198 (463)
T ss_pred cccccCCcceeeeccccceeEEeEEcCcccccccceecCcc--cchhhccccceeccchhhHHHhhhhhccchHHHhhhh
Confidence 334555 777779999999999999986443 111110 00 0000 0111111 1122333449999999999
Q ss_pred CCCCCcceeEEEEcCeeEEEEEEccCCCCCCe------EEEecC
Q 003377 753 SSNPNCFAKVMLVAGDHRVGIFAKEHIEASEE------LFYDYR 790 (824)
Q Consensus 753 SC~PNc~~~~v~V~G~~rI~~fA~RDI~aGEE------LTfDYg 790 (824)
++.|+-....+...+..|++.++.+-++-+.- ++.+|.
T Consensus 199 ~~~~~s~~~~~~~~~~~r~~~~~~q~~~~~~~~e~k~~~~~~~~ 242 (463)
T KOG1081|consen 199 SKKPASTMSEKIKEAKARFGKLKAQWEAGIKQKELKPEEYKRIK 242 (463)
T ss_pred ccccchhhhhhhhcccchhhhcccchhhccchhhcccccccccc
Confidence 99999999999999999999999998888877 666663
No 44
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=34.27 E-value=47 Score=26.24 Aligned_cols=33 Identities=39% Similarity=0.721 Sum_probs=24.7
Q ss_pred ccceeeEeCCCCeEEEeCCC----ccccCCCccccccC
Q 003377 144 GRRRIYYDQHGSEALVCSDS----EEDIIEPEEEKHEF 177 (824)
Q Consensus 144 grrriYyd~~g~EalicSds----eee~~e~eeeK~eF 177 (824)
|.+.|++|...||. ||+.= ||.++.++-|.++|
T Consensus 7 g~~~~~~D~~~g~~-vC~~CG~Vl~e~~i~~~~e~r~f 43 (43)
T PF08271_consen 7 GSKEIVFDPERGEL-VCPNCGLVLEENIIDEGPEWREF 43 (43)
T ss_dssp SSSEEEEETTTTEE-EETTT-BBEE-TTBSCCCSCCHC
T ss_pred cCCceEEcCCCCeE-ECCCCCCEeecccccCCcccccC
Confidence 55669999999997 99875 66667777677666
No 45
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=33.58 E-value=48 Score=40.95 Aligned_cols=41 Identities=22% Similarity=0.556 Sum_probs=34.7
Q ss_pred CCCCcHHHHHHHHHhhhhcCCchHHHHHhhhCCCCcHHHHHHH
Q 003377 457 SSEWKPIEKELYLKGVEIFGRNSCLIARNLLSGLKTCMEVSTY 499 (824)
Q Consensus 457 ~~~W~~~E~~l~~k~v~~fg~N~C~iA~~ll~g~KTC~EV~~y 499 (824)
..-||++|+-||.|++..|-+++-+|+..| .+||=+|--+|
T Consensus 619 Sd~WTp~E~~lF~kA~y~~~KDF~~v~km~--~~KtVaqCVey 659 (907)
T KOG4167|consen 619 SDKWTPLERKLFNKALYTYSKDFIFVQKMV--KSKTVAQCVEY 659 (907)
T ss_pred cccccHHHHHHHHHHHHHhcccHHHHHHHh--ccccHHHHHHH
Confidence 356999999999999999999999999977 67886665444
No 46
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=31.18 E-value=27 Score=32.49 Aligned_cols=17 Identities=35% Similarity=0.618 Sum_probs=12.9
Q ss_pred EEEEEccCCCCCCeEEE
Q 003377 771 VGIFAKEHIEASEELFY 787 (824)
Q Consensus 771 I~~fA~RDI~aGEELTf 787 (824)
.|+||+|||++||-|.+
T Consensus 2 rGl~At~dI~~Ge~I~~ 18 (162)
T PF00856_consen 2 RGLFATRDIKAGEVILI 18 (162)
T ss_dssp EEEEESS-B-TTEEEEE
T ss_pred EEEEECccCCCCCEEEE
Confidence 47999999999998874
No 47
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=29.82 E-value=28 Score=42.53 Aligned_cols=28 Identities=14% Similarity=-0.004 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHH-----HHHHHHHHHHHHHHHh
Q 003377 28 TYKLNQLKKQVQ-----AERVVSVKDKIEKNRK 55 (824)
Q Consensus 28 ~~~i~~lKkqi~-----~~R~~~ik~k~e~n~~ 55 (824)
.-++..++.+-+ ++|+..||+++.++++
T Consensus 19 ~r~~~~~~~K~~~~~~~~~~~e~i~~~~~E~k~ 51 (739)
T KOG1079|consen 19 KRVREADEGKSAKSKNPADRLEKIKILNCEWKK 51 (739)
T ss_pred HHHHHHhhhhhhcccCHHHHHHHHHHHHHHHhh
Confidence 334444455555 7899999999999998
No 48
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=28.54 E-value=32 Score=28.37 Aligned_cols=15 Identities=20% Similarity=0.171 Sum_probs=11.3
Q ss_pred EEEEccCCCCCCeEE
Q 003377 772 GIFAKEHIEASEELF 786 (824)
Q Consensus 772 ~~fA~RDI~aGEELT 786 (824)
.++|.|||++|+.|+
T Consensus 3 vvVA~~di~~G~~i~ 17 (63)
T PF08666_consen 3 VVVAARDIPAGTVIT 17 (63)
T ss_dssp EEEESSTB-TT-BEC
T ss_pred EEEEeCccCCCCEEc
Confidence 378999999999995
No 49
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=28.41 E-value=82 Score=36.87 Aligned_cols=40 Identities=33% Similarity=0.430 Sum_probs=34.2
Q ss_pred CCCCcHHHHHHHHHhhhhcC-CchHHHHHhhhCCCCcHHHHHH
Q 003377 457 SSEWKPIEKELYLKGVEIFG-RNSCLIARNLLSGLKTCMEVST 498 (824)
Q Consensus 457 ~~~W~~~E~~l~~k~v~~fg-~N~C~iA~~ll~g~KTC~EV~~ 498 (824)
...||.-|..++++++++|| .|+=-||..+ |+||=-|+-.
T Consensus 72 ~~~WtadEEilLLea~~t~G~GNW~dIA~hI--GtKtkeeck~ 112 (438)
T KOG0457|consen 72 DPSWTADEEILLLEAAETYGFGNWQDIADHI--GTKTKEECKE 112 (438)
T ss_pred CCCCChHHHHHHHHHHHHhCCCcHHHHHHHH--cccchHHHHH
Confidence 56899999999999999999 6999999987 8888555533
No 50
>PLN03091 hypothetical protein; Provisional
Probab=27.82 E-value=40 Score=39.46 Aligned_cols=47 Identities=19% Similarity=0.172 Sum_probs=38.8
Q ss_pred ccccCCcccchhhhhhHhhcCCcHHHHHHHHHHh--CCCchHHHHHHHHhH
Q 003377 173 EKHEFSDGEDRILWTVFEEHGLGEEVINAVSQFI--GIATSEVQDRYSTLK 221 (824)
Q Consensus 173 eK~eF~e~eD~ii~m~~qe~Gls~~Vl~~l~q~~--~~~~seI~eRy~~L~ 221 (824)
-|.-||..||.+|..+++.||-. --..||+.+ +|+.-+..+||...-
T Consensus 13 rKg~WTpEEDe~L~~~V~kyG~~--nWs~IAk~~g~gRT~KQCRERW~NyL 61 (459)
T PLN03091 13 RKGLWSPEEDEKLLRHITKYGHG--CWSSVPKQAGLQRCGKSCRLRWINYL 61 (459)
T ss_pred cCCCCCHHHHHHHHHHHHHhCcC--CHHHHhhhhccCcCcchHhHHHHhcc
Confidence 35679999999999999999974 356777776 699999999996543
No 51
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=27.48 E-value=36 Score=34.64 Aligned_cols=49 Identities=12% Similarity=-0.014 Sum_probs=37.7
Q ss_pred eeeEeCCCCeEEEeCCCccccCCCcccc----ccCCcccchhhhhhHhhcCCc
Q 003377 147 RIYYDQHGSEALVCSDSEEDIIEPEEEK----HEFSDGEDRILWTVFEEHGLG 195 (824)
Q Consensus 147 riYyd~~g~EalicSdseee~~e~eeeK----~eF~e~eD~ii~m~~qe~Gls 195 (824)
+||||+.|+|.-.+|-.+...+.-=.++ --.|......+++.++.+|+.
T Consensus 22 ~~~~~~~g~~~~~~~~~D~~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~ 74 (169)
T TIGR02726 22 RIVINDEGIESRNFDIKDGMGVIVLQLCGIDVAIITSKKSGAVRHRAEELKIK 74 (169)
T ss_pred eEEEcCCCcEEEEEecchHHHHHHHHHCCCEEEEEECCCcHHHHHHHHHCCCc
Confidence 7999999999999998887754222122 356777888889999999986
No 52
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.14 E-value=46 Score=38.61 Aligned_cols=44 Identities=25% Similarity=0.272 Sum_probs=32.4
Q ss_pred CccccccCC---CCCCcceeEEEEcCeeEEEEEEccCCCCCCeEEEecCCCCC
Q 003377 745 DKLKFANHS---SNPNCFAKVMLVAGDHRVGIFAKEHIEASEELFYDYRYGPD 794 (824)
Q Consensus 745 N~aRFINHS---C~PNc~~~~v~V~G~~rI~~fA~RDI~aGEELTfDYgy~~d 794 (824)
-.+-|+||- |+.|... +..-+-+.|.|+|++|+|+.--||..+.
T Consensus 217 p~ad~lNhd~~k~nanl~y------~~NcL~mva~r~iekgdev~n~dg~~p~ 263 (466)
T KOG1338|consen 217 PIADFLNHDGLKANANLRY------EDNCLEMVADRNIEKGDEVDNSDGLKPM 263 (466)
T ss_pred chhhhhccchhhcccceec------cCcceeeeecCCCCCccccccccccCcc
Confidence 456789995 5555432 4455678999999999999999985443
No 53
>KOG3813 consensus Uncharacterized conserved protein (tumor-suppressor AXUD1 in humans) [General function prediction only]
Probab=24.41 E-value=34 Score=40.65 Aligned_cols=29 Identities=34% Similarity=0.904 Sum_probs=15.3
Q ss_pred ccCCCcccccccCccCcc----cCCCCcccCCC
Q 003377 622 CRSRQCPCFAAGRECDPD----VCRNCWVSCGD 650 (824)
Q Consensus 622 C~t~~CpC~~a~rECdPd----~C~~C~~sCg~ 650 (824)
|.+..|.|.+++..|.-| -|..|...||.
T Consensus 316 CdPETCaCSqaGIkCQvDr~~fPCgC~rEgCgN 348 (640)
T KOG3813|consen 316 CDPETCACSQAGIKCQVDRGEFPCGCFREGCGN 348 (640)
T ss_pred eChhhcchhccCceEeecCcccccccchhhcCC
Confidence 555556666666555332 25545555554
No 54
>PF14100 PmoA: Methane oxygenase PmoA
Probab=22.83 E-value=70 Score=34.98 Aligned_cols=43 Identities=28% Similarity=0.321 Sum_probs=33.2
Q ss_pred ccccCCCCCCcceeEEEEcCeeEEEE------EEccCCCCCCeEEEecCC
Q 003377 748 KFANHSSNPNCFAKVMLVAGDHRVGI------FAKEHIEASEELFYDYRY 791 (824)
Q Consensus 748 RFINHSC~PNc~~~~v~V~G~~rI~~------fA~RDI~aGEELTfDYgy 791 (824)
=|++|--+||- ...|.+.+...+++ ..--.|++||.|++.|+.
T Consensus 204 ~~~dhP~N~~~-P~~W~vR~~g~~~~~p~~~~~~~~~l~~G~~l~~rYr~ 252 (271)
T PF14100_consen 204 AILDHPSNPNY-PTPWHVRGYGLFGANPAPAFDGPLTLPPGETLTLRYRV 252 (271)
T ss_pred EEEeCCCCCCC-CcceEEeccCcceecccccccCceecCCCCeEEEEEEE
Confidence 48899998875 47888886655544 445689999999999974
No 55
>smart00760 Bac_DnaA_C Bacterial dnaA protein helix-turn-helix domain. Could be involved in DNA-binding.
Probab=22.00 E-value=75 Score=26.65 Aligned_cols=21 Identities=29% Similarity=0.773 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhCCCchHHHHH
Q 003377 196 EEVINAVSQFIGIATSEVQDR 216 (824)
Q Consensus 196 ~~Vl~~l~q~~~~~~seI~eR 216 (824)
|+|+++||++++.++.||...
T Consensus 3 ~~I~~~Va~~~~i~~~~i~s~ 23 (60)
T smart00760 3 EEIIEAVAEYFGVKPEDLKSK 23 (60)
T ss_pred HHHHHHHHHHhCCCHHHHhcC
Confidence 789999999999999998654
No 56
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=20.59 E-value=1e+02 Score=31.14 Aligned_cols=40 Identities=20% Similarity=0.484 Sum_probs=32.0
Q ss_pred hhhhhhHhhcC-CcHHHHHHHHHHhCCCchHHHH---HHHHhHh
Q 003377 183 RILWTVFEEHG-LGEEVINAVSQFIGIATSEVQD---RYSTLKE 222 (824)
Q Consensus 183 ~ii~m~~qe~G-ls~~Vl~~l~q~~~~~~seI~e---Ry~~L~~ 222 (824)
.+||.+=+++| +++++++.||+.++.++++|.+ -|..+..
T Consensus 27 ~~L~~vQ~~~G~Ip~e~~~~iA~~l~v~~~~V~~vatFY~~f~~ 70 (156)
T PRK05988 27 PILHAIQDEFGYVPEDAVPVIAEALNLSRAEVHGVITFYHDFRT 70 (156)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhccCC
Confidence 46777777888 6999999999999999999865 4555544
No 57
>KOG3988 consensus Protein-tyrosine sulfotransferase TPST1/TPST2 [Posttranslational modification, protein turnover, chaperones]
Probab=20.36 E-value=67 Score=35.94 Aligned_cols=21 Identities=43% Similarity=0.898 Sum_probs=19.0
Q ss_pred hhhHhhcCCcHHHH-HHHHHHh
Q 003377 186 WTVFEEHGLGEEVI-NAVSQFI 206 (824)
Q Consensus 186 ~m~~qe~Gls~~Vl-~~l~q~~ 206 (824)
|.-+||.|.++||+ +++++||
T Consensus 122 ~~rl~eaGvT~EV~d~AisaFi 143 (378)
T KOG3988|consen 122 WLRLQEAGVTDEVLDSAISAFI 143 (378)
T ss_pred HhhhhhccchHHHHHHHHHHHH
Confidence 66789999999999 7899997
No 58
>cd00150 PlantTI Plant trypsin inhibitors such as squash trypsin inhibitor. Plant proteinase inhibitors play important roles in natural plant defense. Proteinase inhibitors from squash seeds form an uniform family of small proteins cross-linked with three disulfide bridges.
Probab=20.17 E-value=69 Score=23.65 Aligned_cols=20 Identities=40% Similarity=0.846 Sum_probs=17.1
Q ss_pred ccCCCCCCCCCCCCcccCCC
Q 003377 576 YTPCGCQSMCGKQCPCLHNG 595 (824)
Q Consensus 576 y~PC~c~~~C~~~C~C~~~g 595 (824)
+++|...+.|-..|.|..+|
T Consensus 5 lm~Ck~DsDCl~~CiC~~~G 24 (27)
T cd00150 5 LMECKRDSDCLAECICLENG 24 (27)
T ss_pred heeccccccccCCCEEcccc
Confidence 56888888898999999876
No 59
>smart00286 PTI Plant trypsin inhibitors.
Probab=20.07 E-value=71 Score=23.93 Aligned_cols=20 Identities=40% Similarity=0.841 Sum_probs=17.4
Q ss_pred ccCCCCCCCCCCCCcccCCC
Q 003377 576 YTPCGCQSMCGKQCPCLHNG 595 (824)
Q Consensus 576 y~PC~c~~~C~~~C~C~~~g 595 (824)
+++|...+.|-..|.|..+|
T Consensus 7 lm~Ck~DsDCl~~CiC~~~G 26 (29)
T smart00286 7 LMECKRDSDCMAECICLANG 26 (29)
T ss_pred hhccccccCcccCCEEcccc
Confidence 67888889999999999876
No 60
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=20.06 E-value=98 Score=33.87 Aligned_cols=49 Identities=16% Similarity=0.308 Sum_probs=36.6
Q ss_pred cCCcccchhhhhhHhhcCCcHHHHHHHHHH-h----------------------------------CCCchHHHHHHHHh
Q 003377 176 EFSDGEDRILWTVFEEHGLGEEVINAVSQF-I----------------------------------GIATSEVQDRYSTL 220 (824)
Q Consensus 176 eF~e~eD~ii~m~~qe~Gls~~Vl~~l~q~-~----------------------------------~~~~seI~eRy~~L 220 (824)
+|++.|+.+||-+-+-.|+|..-++.+-+. . +.+.+||+..|+.|
T Consensus 145 ~l~~~E~~~L~~Ia~~Lgis~~df~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ay~vLgv~~~as~~eIk~aYr~L 224 (267)
T PRK09430 145 SLHPNERQVLYVIAEELGFSRFQFDQLLRMMQAGFRFQQQQGGGGYQQAQRGPTLEDAYKVLGVSESDDDQEIKRAYRKL 224 (267)
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcccccccccccccCCCcHHhHHHHcCCCCCCCHHHHHHHHHHH
Confidence 388899999999999999998666444322 1 23557899999999
Q ss_pred Hhhc
Q 003377 221 KEKY 224 (824)
Q Consensus 221 ~~k~ 224 (824)
..++
T Consensus 225 ~~~~ 228 (267)
T PRK09430 225 MSEH 228 (267)
T ss_pred HHHh
Confidence 7654
Done!