BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003378
(824 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 1041 bits (2692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/816 (60%), Positives = 627/816 (76%), Gaps = 18/816 (2%)
Query: 23 GKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYR 82
GKSTLTDSLV AGII+ AG+ R TDTR+DE ERGITIKST ISLY EM+D +K +
Sbjct: 31 GKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIK 90
Query: 83 GERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGER 142
+ GN +LINLIDSPGHVDFSSEVTAALR+TDGALVVVD IEGVCVQTETVLRQALGER
Sbjct: 91 QKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGER 150
Query: 143 IRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVA 202
I+PV+ +NK+DR LELQV E+ YQTF + +E+ NVI++TY D +LGDVQVYP +GTVA
Sbjct: 151 IKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVA 210
Query: 203 FSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRKWTSRNT---GSPTC 259
F +GLHGWAFT+ FA YA KFGVD++KMM+RLWG++FF+P T+KWT+++T G P
Sbjct: 211 FGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAEGKP-L 269
Query: 260 KRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLP 319
+R F F +PI ++ MN +KD++ +L+KL + +K +EK+L GKAL+K VM+ +LP
Sbjct: 270 ERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLP 329
Query: 320 ASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPAS 379
A+ ALLEM++ HLPSP TAQ YR E LYEGP DDA AI+NCDP+ LMLYVSKM+P S
Sbjct: 330 AADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTS 389
Query: 380 DKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVP 439
DKGRF+AFGRVF+G V +G KVRI GPNYVPG+K DL++K++QR V+ MG+ E ++D P
Sbjct: 390 DKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCP 449
Query: 440 CGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEG 499
GN + +VG+DQ++ K TLT + AH ++ MKFSVSPVV+VAV+ K A+DLPKLVEG
Sbjct: 450 AGNIIGLVGIDQFLLKTGTLTTSET--AHNMKVMKFSVSPVVQVAVEVKNANDLPKLVEG 507
Query: 500 LKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRET 559
LKRL+KSDP V+ M ESGEHI+AG GELHLEICL+DL+ D G + S PVV++RET
Sbjct: 508 LKRLSKSDPCVLTYMSESGEHIVAGTGELHLEICLQDLEHDH-AGVPLKISPPVVAYRET 566
Query: 560 VLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWD 619
V +S +T +SKSPNKHNR+Y++A P++E ++ AI++G I PRDD K R++I+++++GWD
Sbjct: 567 VESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWD 626
Query: 620 KDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICF 679
A+KIWCFGP+ GPN+V+D K VQYL+EIKDSVVA FQWA+KEG + E MR +
Sbjct: 627 VTDARKIWCFGPDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRV 686
Query: 680 EVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEP-----------ALGGIYSV 728
+ DV LHADAIHRGGGQ+IPT RR YA L A P++ EP A+GGIYSV
Sbjct: 687 NILDVTLHADAIHRGGGQIIPTMRRATYAGFLLADPKIQEPVFLVEIQCPEQAVGGIYSV 746
Query: 729 LNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSS 788
LN+KRG V E QRPGTPL+ +KAYLPV ESFGF+ LR AT GQAFPQ VFDHW + S
Sbjct: 747 LNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTLGS 806
Query: 789 DPLEPGSQASQLVLDIRKRKGLKEQMTPLSEYEDKL 824
DPL+P S+A ++VL RKR G+KE++ EY DKL
Sbjct: 807 DPLDPTSKAGEIVLAARKRHGMKEEVPGWQEYYDKL 842
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 1037 bits (2682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/816 (60%), Positives = 626/816 (76%), Gaps = 18/816 (2%)
Query: 23 GKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYR 82
GKSTLTDSLV AGII+ AG+ R TDTR+DE ERGITIKST ISLY EM+D +K +
Sbjct: 31 GKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIK 90
Query: 83 GERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGER 142
+ GN +LINLIDSPGHVDFSSEVTAALR+TDGALVVVD IEGVCVQTETVLRQALGER
Sbjct: 91 QKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGER 150
Query: 143 IRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVA 202
I+PV+ +NK+DR LELQV E+ YQTF + +E+ NVI++TY D +LGDVQVYP +GTVA
Sbjct: 151 IKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVA 210
Query: 203 FSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRKWTSRNT---GSPTC 259
F +GLHGWAFT+ FA YA KFGVD++KMM+RLWG++FF+P T+KWT+++T G P
Sbjct: 211 FGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAEGKP-L 269
Query: 260 KRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLP 319
+R F F +PI ++ MN +KD++ +L+KL + +K +EK+L GKAL+K VM+ +LP
Sbjct: 270 ERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLP 329
Query: 320 ASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPAS 379
A+ ALLEM++ HLPSP TAQ YR E LYEGP DDA AI+NCDP+ LMLYVSKM+P S
Sbjct: 330 AADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTS 389
Query: 380 DKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVP 439
DKGRF+AFGRVF+G V +G KVRI GPNYVPG+K DL++K++QR V+ MG+ E ++D P
Sbjct: 390 DKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCP 449
Query: 440 CGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEG 499
GN + +VG+DQ++ K TLT + AH ++ MKFSVSPVV+VAV+ K A+DLPKLVEG
Sbjct: 450 AGNIIGLVGIDQFLLKTGTLTTSET--AHNMKVMKFSVSPVVQVAVEVKNANDLPKLVEG 507
Query: 500 LKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRET 559
LKRL+KSDP V+ M ESGEHI+AG GELHLEICL+DL+ D G + S PVV++RET
Sbjct: 508 LKRLSKSDPCVLTYMSESGEHIVAGTGELHLEICLQDLEHDH-AGVPLKISPPVVAYRET 566
Query: 560 VLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWD 619
V +S +T +SKSPNKHNR+Y++A P++E ++ AI++G I PRDD K R++I+++++GWD
Sbjct: 567 VESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWD 626
Query: 620 KDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICF 679
A+KIWCFGP+ GPN+V+D K VQYL+EIKDSVVA FQWA+KEG + E MR +
Sbjct: 627 VTDARKIWCFGPDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRV 686
Query: 680 EVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEP-----------ALGGIYSV 728
+ DV LHADAI RGGGQ+IPT RR YA L A P++ EP A+GGIYSV
Sbjct: 687 NILDVTLHADAIXRGGGQIIPTMRRATYAGFLLADPKIQEPVFLVEIQCPEQAVGGIYSV 746
Query: 729 LNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSS 788
LN+KRG V E QRPGTPL+ +KAYLPV ESFGF+ LR AT GQAFPQ VFDHW + S
Sbjct: 747 LNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTLGS 806
Query: 789 DPLEPGSQASQLVLDIRKRKGLKEQMTPLSEYEDKL 824
DPL+P S+A ++VL RKR G+KE++ EY DKL
Sbjct: 807 DPLDPTSKAGEIVLAARKRHGMKEEVPGWQEYYDKL 842
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 132/490 (26%), Positives = 214/490 (43%), Gaps = 82/490 (16%)
Query: 304 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCD 363
+G AL + +Q LL+ ++ +LPSP + EG + + + D
Sbjct: 259 FLGSALKNKGVQL-------LLDAVVDYLPSPLDIPPIK-GTTPEGEVVEIHP------D 304
Query: 364 PEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQR 423
P GPL K++ GR F RV+SG + +G V N G K+ V R
Sbjct: 305 PNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVY----NTTKGRKE-----RVAR 354
Query: 424 TVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSV-SPVVR 482
+ +E VE++ G+ A+VGL + IT + TL E DA + V PV+
Sbjct: 355 LLRMHANHREEVEELKAGDLGAVVGLKETITGD-TLVGE---DAPRVILESIEVPEPVID 410
Query: 483 VAVQCKVASDLPKLVEGLKRLAKSDPMV-VCSMEESGEHIIAGAGELHLEICLKDLQDDF 541
VA++ K +D KL + L RLA+ DP V + E+G+ II+G GELHLEI + L+ +F
Sbjct: 411 VAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREF 470
Query: 542 MGGAEIIKSDPVVSFRETVLE------KSCRTVMSKSPNKHNRLYMEARPLEEG--LAEA 593
A + K P V++RET+ + K R + H ++ +E P G A
Sbjct: 471 KVDANVGK--PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNA 528
Query: 594 IDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIK 653
I G I P V+ I ++ GP P VVD+
Sbjct: 529 IVGGVIPKEYIPAVQKGI------------EEAMQSGPLIGFP--VVDI----------- 563
Query: 654 DSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTA 713
+ +G+ AE + + F++ + +A+ +G ++ RV ++T
Sbjct: 564 -------KVTLYDGSYAEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRV----EVTT 612
Query: 714 KPRLLEPALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQ 773
E +G + LN +RG + R + I+A++P+ E FG+++ LR+ T G+
Sbjct: 613 P----EEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEMFGYATDLRSKTQGR 666
Query: 774 AFPQCVFDHW 783
FDH+
Sbjct: 667 GSFVMFFDHY 676
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 77/140 (55%), Gaps = 18/140 (12%)
Query: 22 AGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALK 79
AGK+T T+ ++ G I + EV D + E ERGITI + + +++
Sbjct: 23 AGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK------- 75
Query: 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL 139
++ IN+ID+PGHVDF+ EV ++R+ DGA+VV D +GV Q+ETV RQA
Sbjct: 76 ---------DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE 126
Query: 140 GERIRPVLTVNKMDRCFLEL 159
++ + NKMD+ +L
Sbjct: 127 KYKVPRIAFANKMDKTGADL 146
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 132/490 (26%), Positives = 213/490 (43%), Gaps = 82/490 (16%)
Query: 304 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCD 363
+G AL + +Q LL+ ++ +LPSP + G + I + D
Sbjct: 226 FLGSALKNKGVQL-------LLDAVVDYLPSPLDIPPIK------GTTPEGEVVEI-HPD 271
Query: 364 PEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQR 423
P GPL K++ GR F RV+SG + +G V N G K+ V R
Sbjct: 272 PNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVY----NTTKGRKE-----RVAR 321
Query: 424 TVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSV-SPVVR 482
+ +E VE++ G+ A+VGL + IT + TL E DA + V PV+
Sbjct: 322 LLRMHANHREEVEELKAGDLGAVVGLKETITGD-TLVGE---DAPRVILESIEVPEPVID 377
Query: 483 VAVQCKVASDLPKLVEGLKRLAKSDPMV-VCSMEESGEHIIAGAGELHLEICLKDLQDDF 541
VA++ K +D KL + L RLA+ DP V + E+G+ II+G GELHLEI + L+ +F
Sbjct: 378 VAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREF 437
Query: 542 MGGAEIIKSDPVVSFRETVLE------KSCRTVMSKSPNKHNRLYMEARPLEEG--LAEA 593
A + K P V++RET+ + K R + H ++ +E P G A
Sbjct: 438 KVDANVGK--PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNA 495
Query: 594 IDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIK 653
I G I P V+ I ++ GP P VVD+
Sbjct: 496 IVGGVIPKEYIPAVQKGI------------EEAMQSGPLIGFP--VVDI----------- 530
Query: 654 DSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTA 713
+ +G+ AE + + F++ + +A+ +G ++ RV ++T
Sbjct: 531 -------KVTLYDGSYAEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRV----EVTT 579
Query: 714 KPRLLEPALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQ 773
E +G + LN +RG + R + I+A++P+ E FG+++ LR+ T G+
Sbjct: 580 P----EEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEMFGYATDLRSKTQGR 633
Query: 774 AFPQCVFDHW 783
FDH+
Sbjct: 634 GSFVMFFDHY 643
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 49/72 (68%)
Query: 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVL 147
++ IN+ID+PGHVDF+ EV ++R+ DGA+VV D +GV Q+ETV RQA ++ +
Sbjct: 42 KDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIA 101
Query: 148 TVNKMDRCFLEL 159
NKMD+ +L
Sbjct: 102 FANKMDKTGADL 113
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 132/490 (26%), Positives = 214/490 (43%), Gaps = 82/490 (16%)
Query: 304 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCD 363
+G AL + +Q LL+ ++ +LPSP + EG + + + D
Sbjct: 259 FLGSALKNKGVQL-------LLDAVVDYLPSPLDIPPIK-GTTPEGEVVEIHP------D 304
Query: 364 PEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQR 423
P GPL K++ GR F RV+SG + +G V N G K+ V R
Sbjct: 305 PNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVY----NTTKGRKE-----RVAR 354
Query: 424 TVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSV-SPVVR 482
+ +E VE++ G+ A+VGL + IT + TL E DA + V PV+
Sbjct: 355 LLRMHANHREEVEELKAGDLGAVVGLKETITGD-TLVGE---DAPRVILESIEVPEPVID 410
Query: 483 VAVQCKVASDLPKLVEGLKRLAKSDPMV-VCSMEESGEHIIAGAGELHLEICLKDLQDDF 541
VA++ K +D KL + L RLA+ DP V + E+G+ II+G GELHLEI + L+ +F
Sbjct: 411 VAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREF 470
Query: 542 MGGAEIIKSDPVVSFRETVLE------KSCRTVMSKSPNKHNRLYMEARPLEEG--LAEA 593
A + K P V++RET+ + K R + H ++ +E P G A
Sbjct: 471 KVDANVGK--PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNA 528
Query: 594 IDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIK 653
I G I P V+ I ++ GP P VVD+
Sbjct: 529 IVGGVIPKEYIPAVQKGI------------EEAMQSGPLIGFP--VVDI----------- 563
Query: 654 DSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTA 713
+ +G+ AE + + F++ + +A+ +G ++ RV ++T
Sbjct: 564 -------KVTLYDGSYAEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRV----EVTT 612
Query: 714 KPRLLEPALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQ 773
E +G + LN +RG + R + I+A++P+ E FG+++ LR+ T G+
Sbjct: 613 P----EEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEMFGYATDLRSKTQGR 666
Query: 774 AFPQCVFDHW 783
FDH+
Sbjct: 667 GSFVMFFDHY 676
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 77/140 (55%), Gaps = 18/140 (12%)
Query: 22 AGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALK 79
AGK+T T+ ++ G I + EV D + E ERGITI + + +++
Sbjct: 23 AGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK------- 75
Query: 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL 139
++ IN+ID+PGHVDF+ EV ++R+ DGA+VV D +GV Q+ETV RQA
Sbjct: 76 ---------DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE 126
Query: 140 GERIRPVLTVNKMDRCFLEL 159
++ + NKMD+ +L
Sbjct: 127 KYKVPRIAFANKMDKTGADL 146
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 131/490 (26%), Positives = 213/490 (43%), Gaps = 82/490 (16%)
Query: 304 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCD 363
+G AL + +Q LL+ ++ +LPSP + EG + + + D
Sbjct: 259 FLGSALKNKGVQL-------LLDAVVDYLPSPLDIPPIK-GTTPEGEVVEIHP------D 304
Query: 364 PEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQR 423
P GPL K++ GR F RV+SG + +G V N G K+ V R
Sbjct: 305 PNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVY----NTTKGRKE-----RVAR 354
Query: 424 TVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSV-SPVVR 482
+ +E VE++ G+ A+VGL + IT + TL E DA + V PV+
Sbjct: 355 LLRMHANHREEVEELKAGDLGAVVGLKETITGD-TLVGE---DAPRVILESIEVPEPVID 410
Query: 483 VAVQCKVASDLPKLVEGLKRLAKSDPMV-VCSMEESGEHIIAGAGELHLEICLKDLQDDF 541
VA++ K +D KL + L RLA+ DP V + E+G+ II+G GELHLEI + L+ +F
Sbjct: 411 VAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREF 470
Query: 542 MGGAEIIKSDPVVSFRETVLE------KSCRTVMSKSPNKHNRLYMEARPLEEG--LAEA 593
A + K P V++RET+ + K R + H ++ +E P G A
Sbjct: 471 KVDANVGK--PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNA 528
Query: 594 IDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIK 653
I G I P V+ I ++ GP P VVD+
Sbjct: 529 IVGGVIPKEYIPAVQKGI------------EEAMQSGPLIGFP--VVDI----------- 563
Query: 654 DSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTA 713
+ +G+ E + + F++ + +A+ +G ++ RV ++T
Sbjct: 564 -------KVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRV----EVTT 612
Query: 714 KPRLLEPALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQ 773
E +G + LN +RG + R + I+A++P+ E FG+++ LR+ T G+
Sbjct: 613 P----EEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEMFGYATDLRSKTQGR 666
Query: 774 AFPQCVFDHW 783
FDH+
Sbjct: 667 GSFVMFFDHY 676
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 77/140 (55%), Gaps = 18/140 (12%)
Query: 22 AGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALK 79
AGK+T T+ ++ G I + EV D + E ERGITI + + +++
Sbjct: 23 AGKTTTTERILYYTGRIHKIAEVHEGAATMDFMEQERERGITITAAVTTCFWK------- 75
Query: 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL 139
++ IN+ID+PGHVDF+ EV ++R+ DGA+VV D +GV Q+ETV RQA
Sbjct: 76 ---------DHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE 126
Query: 140 GERIRPVLTVNKMDRCFLEL 159
++ + NKMD+ +L
Sbjct: 127 KYKVPRIAFANKMDKTGADL 146
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 131/490 (26%), Positives = 213/490 (43%), Gaps = 82/490 (16%)
Query: 304 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCD 363
+G AL + +Q LL+ ++ +LPSP + EG + + + D
Sbjct: 259 FLGSALKNKGVQL-------LLDAVVDYLPSPLDIPPIK-GTTPEGEVVEIHP------D 304
Query: 364 PEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQR 423
P GPL K++ GR F RV+SG + +G V N G K+ V R
Sbjct: 305 PNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVY----NTTKGRKE-----RVAR 354
Query: 424 TVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSV-SPVVR 482
+ +E VE++ G+ A+VGL + IT + TL E DA + V PV+
Sbjct: 355 LLRMHANHREEVEELKAGDLGAVVGLKETITGD-TLVGE---DAPRVILESIEVPEPVID 410
Query: 483 VAVQCKVASDLPKLVEGLKRLAKSDPMV-VCSMEESGEHIIAGAGELHLEICLKDLQDDF 541
VA++ K +D KL + L RLA+ DP V + E+G+ II+G GELHLEI + L+ +F
Sbjct: 411 VAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREF 470
Query: 542 MGGAEIIKSDPVVSFRETVLE------KSCRTVMSKSPNKHNRLYMEARPLEEG--LAEA 593
A + K P V++RET+ + K R + H ++ +E P G A
Sbjct: 471 KVDANVGK--PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNA 528
Query: 594 IDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIK 653
I G I P V+ I ++ GP P VVD+
Sbjct: 529 IVGGVIPKEYIPAVQKGI------------EEAMQSGPLIGFP--VVDI----------- 563
Query: 654 DSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTA 713
+ +G+ E + + F++ + +A+ +G ++ RV ++T
Sbjct: 564 -------KVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRV----EVTT 612
Query: 714 KPRLLEPALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQ 773
E +G + LN +RG + R + I+A++P+ E FG+++ LR+ T G+
Sbjct: 613 P----EEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEMFGYATDLRSKTQGR 666
Query: 774 AFPQCVFDHW 783
FDH+
Sbjct: 667 GSFVMFFDHY 676
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 77/140 (55%), Gaps = 18/140 (12%)
Query: 22 AGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALK 79
AGK+T T+ ++ G I + EV D + E ERGITI + + +++
Sbjct: 23 AGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK------- 75
Query: 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL 139
++ IN+ID+PGHVDF+ EV ++R+ DGA+VV D +GV Q+ETV RQA
Sbjct: 76 ---------DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE 126
Query: 140 GERIRPVLTVNKMDRCFLEL 159
++ + NKMD+ +L
Sbjct: 127 KYKVPRIAFANKMDKTGADL 146
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 131/490 (26%), Positives = 212/490 (43%), Gaps = 82/490 (16%)
Query: 304 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCD 363
+G AL + +Q LL+ ++ +LPSP + G + I + D
Sbjct: 259 FLGSALKNKGVQL-------LLDAVVDYLPSPLDIPPIK------GTTPEGEVVEI-HPD 304
Query: 364 PEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQR 423
P GPL K++ GR F RV+SG + +G V N G K+ V R
Sbjct: 305 PNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVY----NTTKGRKE-----RVAR 354
Query: 424 TVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSV-SPVVR 482
+ +E VE++ G+ A+VGL + IT + TL E DA + V PV+
Sbjct: 355 LLRMHANHREEVEELKAGDLGAVVGLKETITGD-TLVGE---DAPRVILESIEVPEPVID 410
Query: 483 VAVQCKVASDLPKLVEGLKRLAKSDPMV-VCSMEESGEHIIAGAGELHLEICLKDLQDDF 541
VA++ K +D KL + L RLA+ DP V + E+G+ II+G GELHLEI + L+ +F
Sbjct: 411 VAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREF 470
Query: 542 MGGAEIIKSDPVVSFRETVLE------KSCRTVMSKSPNKHNRLYMEARPLEEG--LAEA 593
A + K P V++RET+ + K R + H ++ +E P G A
Sbjct: 471 KVDANVGK--PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNA 528
Query: 594 IDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIK 653
I G I P V+ I ++ GP P VVD+
Sbjct: 529 IVGGVIPKEYIPAVQKGI------------EEAMQSGPLIGFP--VVDI----------- 563
Query: 654 DSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTA 713
+ +G+ E + + F++ + +A+ +G ++ RV ++T
Sbjct: 564 -------KVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRV----EVTT 612
Query: 714 KPRLLEPALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQ 773
E +G + LN +RG + R + I+A++P+ E FG+++ LR+ T G+
Sbjct: 613 P----EEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEMFGYATDLRSKTQGR 666
Query: 774 AFPQCVFDHW 783
FDH+
Sbjct: 667 GSFVMFFDHY 676
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 77/140 (55%), Gaps = 18/140 (12%)
Query: 22 AGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALK 79
AGK+T T+ ++ G I + EV D + E ERGITI + + +++
Sbjct: 23 AGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK------- 75
Query: 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL 139
++ IN+ID+PGHVDF+ EV ++R+ DGA+VV D +GV Q+ETV RQA
Sbjct: 76 ---------DHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE 126
Query: 140 GERIRPVLTVNKMDRCFLEL 159
++ + NKMD+ +L
Sbjct: 127 KYKVPRIAFANKMDKTGADL 146
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 131/490 (26%), Positives = 212/490 (43%), Gaps = 82/490 (16%)
Query: 304 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCD 363
+G AL + +Q LL+ ++ +LPSP + G + I + D
Sbjct: 259 FLGSALKNKGVQL-------LLDAVVDYLPSPLDIPPIK------GTTPEGEVVEI-HPD 304
Query: 364 PEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQR 423
P GPL K++ GR F RV+SG + +G V N G K+ V R
Sbjct: 305 PNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVY----NTTKGRKE-----RVAR 354
Query: 424 TVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSV-SPVVR 482
+ +E VE++ G+ A+VGL + IT + TL E DA + V PV+
Sbjct: 355 LLRMHANHREEVEELKAGDLGAVVGLKETITGD-TLVGE---DAPRVILESIEVPEPVID 410
Query: 483 VAVQCKVASDLPKLVEGLKRLAKSDPMV-VCSMEESGEHIIAGAGELHLEICLKDLQDDF 541
VA++ K +D KL + L RLA+ DP V + E+G+ II+G GELHLEI + L+ +F
Sbjct: 411 VAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREF 470
Query: 542 MGGAEIIKSDPVVSFRETVLE------KSCRTVMSKSPNKHNRLYMEARPLEEG--LAEA 593
A + K P V++RET+ + K R + H ++ +E P G A
Sbjct: 471 KVDANVGK--PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNA 528
Query: 594 IDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIK 653
I G I P V+ I ++ GP P VVD+
Sbjct: 529 IVGGVIPKEYIPAVQKGI------------EEAMQSGPLIGFP--VVDI----------- 563
Query: 654 DSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTA 713
+ +G+ E + + F++ + +A+ +G ++ RV ++T
Sbjct: 564 -------KVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRV----EVTT 612
Query: 714 KPRLLEPALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQ 773
E +G + LN +RG + R + I+A++P+ E FG+++ LR+ T G+
Sbjct: 613 P----EEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEMFGYATDLRSKTQGR 666
Query: 774 AFPQCVFDHW 783
FDH+
Sbjct: 667 GSFVMFFDHY 676
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 77/140 (55%), Gaps = 18/140 (12%)
Query: 22 AGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALK 79
AGK+T T+ ++ G I + EV D + E ERGITI + + +++
Sbjct: 23 AGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK------- 75
Query: 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL 139
++ IN+ID+PGHVDF+ EV ++R+ DGA+VV D +GV Q+ETV RQA
Sbjct: 76 ---------DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE 126
Query: 140 GERIRPVLTVNKMDRCFLEL 159
++ + NKMD+ +L
Sbjct: 127 KYKVPRIAFANKMDKTGADL 146
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 131/490 (26%), Positives = 212/490 (43%), Gaps = 82/490 (16%)
Query: 304 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCD 363
+G AL + +Q LL+ ++ +LPSP + G + I + D
Sbjct: 259 FLGSALKNKGVQL-------LLDAVVDYLPSPLDIPPIK------GTTPEGEVVEI-HPD 304
Query: 364 PEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQR 423
P GPL K++ GR F RV+SG + +G V N G K+ V R
Sbjct: 305 PNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVY----NTTKGRKE-----RVAR 354
Query: 424 TVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSV-SPVVR 482
+ +E VE++ G+ A+VGL + IT + TL E DA + V PV+
Sbjct: 355 LLRMHANHREEVEELKAGDLGAVVGLKETITGD-TLVGE---DAPRVILESIEVPEPVID 410
Query: 483 VAVQCKVASDLPKLVEGLKRLAKSDPMV-VCSMEESGEHIIAGAGELHLEICLKDLQDDF 541
VA++ K +D KL + L RLA+ DP V + E+G+ II+G GELHLEI + L+ +F
Sbjct: 411 VAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREF 470
Query: 542 MGGAEIIKSDPVVSFRETVLE------KSCRTVMSKSPNKHNRLYMEARPLEEG--LAEA 593
A + K P V++RET+ + K R + H ++ +E P G A
Sbjct: 471 KVDANVGK--PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNA 528
Query: 594 IDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIK 653
I G I P V+ I ++ GP P VVD+
Sbjct: 529 IVGGVIPKEYIPAVQKGI------------EEAMQSGPLIGFP--VVDI----------- 563
Query: 654 DSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTA 713
+ +G+ E + + F++ + +A+ +G ++ RV ++T
Sbjct: 564 -------KVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRV----EVTT 612
Query: 714 KPRLLEPALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQ 773
E +G + LN +RG + R + I+A++P+ E FG+++ LR+ T G+
Sbjct: 613 P----EEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEMFGYATDLRSKTQGR 666
Query: 774 AFPQCVFDHW 783
FDH+
Sbjct: 667 GSFVMFFDHY 676
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 77/140 (55%), Gaps = 18/140 (12%)
Query: 22 AGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALK 79
AGK+T T+ ++ G I + EV D + E ERGITI + + +++
Sbjct: 23 AGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK------- 75
Query: 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL 139
++ IN+ID+PGHVDF+ EV ++R+ DGA+VV D +GV Q+ETV RQA
Sbjct: 76 ---------DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE 126
Query: 140 GERIRPVLTVNKMDRCFLEL 159
++ + NKMD+ +L
Sbjct: 127 KYKVPRIAFANKMDKTGADL 146
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 129/490 (26%), Positives = 210/490 (42%), Gaps = 82/490 (16%)
Query: 304 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCD 363
+G AL + +Q LL+ ++ +LPSP + EG + + + D
Sbjct: 259 FLGSALKNKGVQL-------LLDAVVDYLPSPLDIPPIK-GTTPEGEVVEIHP------D 304
Query: 364 PEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQR 423
P GPL K++ GR F RV+SG + +G V N G K+ V R
Sbjct: 305 PNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVY----NTTKGRKE-----RVAR 354
Query: 424 TVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSV-SPVVR 482
+ +E VE++ G+ A+VGL + IT + TL E DA + V PV+
Sbjct: 355 LLRMHANHREEVEELKAGDLGAVVGLKETITGD-TLVGE---DAPRVILESIEVPEPVID 410
Query: 483 VAVQCKVASDLPKLVEGLKRLAKSDPMV-VCSMEESGEHIIAGAGELHLEICLKDLQDDF 541
VA++ K +D KL + L RLA+ P V + E+G II+G GEL LEI + L+ +F
Sbjct: 411 VAIEPKTKADQEKLSQALARLAEESPTFSVSTHPETGSTIISGMGELSLEIIVDRLKREF 470
Query: 542 MGGAEIIKSDPVVSFRETVLE------KSCRTVMSKSPNKHNRLYMEARPLEEG--LAEA 593
A + K P V++RET+ + K R + H ++ +E P G A
Sbjct: 471 KVDANVGK--PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNA 528
Query: 594 IDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIK 653
I G I P V+ I ++ GP P VVD+
Sbjct: 529 IVGGVIPKEYIPAVQKGI------------EEAMQSGPLIGFP--VVDI----------- 563
Query: 654 DSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTA 713
+ +G+ E + + F++ + +A+ +G ++ RV ++T
Sbjct: 564 -------KVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRV----EVTT 612
Query: 714 KPRLLEPALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQ 773
E +G + LN +RG + R + I+A++P+ E FG+++ LR+ T G+
Sbjct: 613 P----EEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEMFGYATDLRSKTQGR 666
Query: 774 AFPQCVFDHW 783
FDH+
Sbjct: 667 GSFVMFFDHY 676
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 77/140 (55%), Gaps = 18/140 (12%)
Query: 22 AGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALK 79
AGK+T T+ ++ G I + EV D + E ERGITI + + +++
Sbjct: 23 AGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK------- 75
Query: 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL 139
++ IN+ID+PGHVDF+ EV ++R+ DGA+VV D +GV Q+ETV RQA
Sbjct: 76 ---------DHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE 126
Query: 140 GERIRPVLTVNKMDRCFLEL 159
++ + NKMD+ +L
Sbjct: 127 KYKVPRIAFANKMDKTGADL 146
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 132/512 (25%), Positives = 208/512 (40%), Gaps = 111/512 (21%)
Query: 323 ALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYAN-AIRNCDPEGPLMLYVSKMIPASDK 381
A+L+ +I +LPSP G LDD A R+ + P K+
Sbjct: 277 AMLDAVIDYLPSPVDVPAIN------GILDDGKDTPAERHASDDEPFSALAFKIATDPFV 330
Query: 382 GRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCG 441
G F RV+SG V +G V N V ++ R V K+E +++V G
Sbjct: 331 GNL-TFFRVYSGVVNSGDTVL----NSVKAARERF-----GRIVQMHANKREEIKEVRAG 380
Query: 442 NTVAMVGLDQYITKNATLTNEKEVDAHPI--RAMKFSVSPVVRVAVQCKVASDLPKLVEG 499
+ A +GL +T TL + DA PI M+F PV+ +AV+ K +D K+
Sbjct: 381 DIAAAIGLKD-VTTGDTLCDP---DA-PIILERMEFP-EPVISIAVEPKTKADQEKMGLA 434
Query: 500 LKRLAKSDPMV-VCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRE 558
L RLAK DP V + EES + IIAG GELHL+I + ++ +F A + K P V++RE
Sbjct: 435 LGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEANVGK--PQVAYRE 492
Query: 559 TVLEKSC-----RTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILS 613
T+ +K S ++ + ++ PLE P +P
Sbjct: 493 TIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLE-------------PGSNP-------- 531
Query: 614 EEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEEN 673
KG +++N+IK V+ G + + + E+
Sbjct: 532 ------------------------------KGYEFINDIKGGVIPGEYIPAVDKGIQEQL 561
Query: 674 MRG--ICFEVCD--VVLHADAIHRGGGQ--VIPTARRVIYASQL-TAKPRLLEPAL---- 722
G + V D + LH + H A + + AKP LLEP +
Sbjct: 562 KAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEV 621
Query: 723 -------GGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAF 775
G + L+++RG + + Q I A +P+ E FG+++ LR+ T G+A
Sbjct: 622 ETPEENTGDVIGDLSRRRGML--KGQESEVTGVKIHAEVPLSEMFGYATQLRSLTKGRAS 679
Query: 776 PQCVFDHWDMMSSDPLEPGSQASQLVLDIRKR 807
F +D E S +Q V++ R +
Sbjct: 680 YTMEFLKYD-------EAPSNVAQAVIEARGK 704
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 75/135 (55%), Gaps = 11/135 (8%)
Query: 22 AGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALK 79
AGK+T T+ ++ G+ + EV D + E ERGITI S + ++ K
Sbjct: 21 AGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFW---SGMAK 77
Query: 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL 139
Y R IN+ID+PGHVDF+ EV ++R+ DGA++V + GV Q+ETV RQA
Sbjct: 78 QYEPHR------INIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQAN 131
Query: 140 GERIRPVLTVNKMDR 154
++ + VNKMDR
Sbjct: 132 KYKVPRIAFVNKMDR 146
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 132/510 (25%), Positives = 207/510 (40%), Gaps = 111/510 (21%)
Query: 323 ALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYAN-AIRNCDPEGPLMLYVSKMIPASDK 381
A+L+ +I +LPSP G LDD A R+ + P K+
Sbjct: 276 AMLDAVIDYLPSPVDVPAIN------GILDDGKDTPAERHASDDEPFSALAFKIATDPFV 329
Query: 382 GRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCG 441
G F RV+SG V +G V N V ++ R V K+E +++V G
Sbjct: 330 GNL-TFFRVYSGVVNSGDTVL----NSVKAARERF-----GRIVQMHANKREEIKEVRAG 379
Query: 442 NTVAMVGLDQYITKNATLTNEKEVDAHPI--RAMKFSVSPVVRVAVQCKVASDLPKLVEG 499
+ A +GL +T TL + DA PI M+F PV+ +AV+ K +D K+
Sbjct: 380 DIAAAIGLKD-VTTGDTLCDP---DA-PIILERMEFP-EPVISIAVEPKTKADQEKMGLA 433
Query: 500 LKRLAKSDPMV-VCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRE 558
L RLAK DP V + EES + IIAG GELHL+I + ++ +F A + K P V++RE
Sbjct: 434 LGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEANVGK--PQVAYRE 491
Query: 559 TVLEKSC-----RTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILS 613
T+ +K S ++ + ++ PLE P +P
Sbjct: 492 TIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLE-------------PGSNP-------- 530
Query: 614 EEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEEN 673
KG +++N+IK V+ G + + + E+
Sbjct: 531 ------------------------------KGYEFINDIKGGVIPGEYIPAVDKGIQEQL 560
Query: 674 MRG--ICFEVCD--VVLHADAIHRGGGQ--VIPTARRVIYASQL-TAKPRLLEPAL---- 722
G + V D + LH + H A + + AKP LLEP +
Sbjct: 561 KAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEV 620
Query: 723 -------GGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAF 775
G + L+++RG + + Q I A +P+ E FG+++ LR+ T G+A
Sbjct: 621 ETPEENTGDVIGDLSRRRGML--KGQESEVTGVKIHAEVPLSEMFGYATQLRSLTKGRAS 678
Query: 776 PQCVFDHWDMMSSDPLEPGSQASQLVLDIR 805
F +D E S +Q V++ R
Sbjct: 679 YTMEFLKYD-------EAPSNVAQAVIEAR 701
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 75/135 (55%), Gaps = 11/135 (8%)
Query: 22 AGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALK 79
AGK+T T+ ++ G+ + EV D + E ERGITI S + ++ K
Sbjct: 20 AGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFW---SGMAK 76
Query: 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL 139
Y R IN+ID+PGHVDF+ EV ++R+ DGA++V + GV Q+ETV RQA
Sbjct: 77 QYEPHR------INIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQAN 130
Query: 140 GERIRPVLTVNKMDR 154
++ + VNKMDR
Sbjct: 131 KYKVPRIAFVNKMDR 145
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 83/151 (54%), Gaps = 16/151 (10%)
Query: 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRQDEAERGITIK 63
+ I +C DA GK+T T+ ++ G+ + EV TD E ERGITI
Sbjct: 13 YRNIGICAHVDA-----GKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITIT 67
Query: 64 STGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDC 123
S ++ ++ K RG Q + Y +N+ID+PGHVDF+ EV +LR+ DGA+VV
Sbjct: 68 SAAVTTFW-------KGSRG--QYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCG 118
Query: 124 IEGVCVQTETVLRQALGERIRPVLTVNKMDR 154
GV Q+ETV RQA + ++ VNKMDR
Sbjct: 119 TSGVEPQSETVWRQANKYGVPRIVYVNKMDR 149
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 113/482 (23%), Positives = 214/482 (44%), Gaps = 73/482 (15%)
Query: 324 LLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGR 383
+L+ +I +LP+P + + DD R+ D P K+ G
Sbjct: 281 VLDAVIDYLPAPT-----EIPAIKGVSPDDETVEDERHADDNEPFSSLAFKIATDPFVGT 335
Query: 384 FFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNT 443
F RV+SG +++G V N V G+K+ V R V ++E +++V G+
Sbjct: 336 L-TFARVYSGVLSSGDSVL----NSVKGKKE-----RVGRMVQMHANQREEIKEVRAGDI 385
Query: 444 VAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRL 503
A++G+ T + + EK + + M F PV+ VAV+ K +D K+ L +L
Sbjct: 386 AALIGMKDVTTGDTLCSIEKPI---ILERMDFP-EPVISVAVEPKTKADQEKMGIALGKL 441
Query: 504 AKSDPMV-VCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLE 562
A+ DP V + EESG+ II+G GELHL+I + ++ +F G E P V++RET+ +
Sbjct: 442 AQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMKREF--GVEANIGKPQVAYRETITK 499
Query: 563 -------KSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEE 615
K R + H + A ++E I +G + + +V ++ +E
Sbjct: 500 DNVEIEGKFVRQSGGRGQFGHCWIRFSAADVDE--KGNITEGLVF---ENEVVGGVVPKE 554
Query: 616 FGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGF-----QWASKEGALA 670
+ + + KG++ ++K+ VVAG+ + +G+
Sbjct: 555 Y----------------------IPAIQKGIE--EQMKNGVVAGYPLIGLKATVFDGSYH 590
Query: 671 EENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPALGGIYSVLN 730
+ + + F++ + +GGG+V+ +V + E +G + LN
Sbjct: 591 DVDSNEMAFKIAASMATKQLAQKGGGKVLEPIMKVEVVTP--------EDYMGDVMGDLN 642
Query: 731 QKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDP 790
++RG + + M+ + I+A +P+ E FG+++ +R+ + G+A F + S+
Sbjct: 643 RRRG-LIQGMEDTVSGKV-IRAEVPLGEMFGYATDVRSMSQGRASYSMEFSKYAEAPSNI 700
Query: 791 LE 792
+E
Sbjct: 701 VE 702
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 76/131 (58%), Gaps = 12/131 (9%)
Query: 23 GKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYR 82
GKSTL D L+ G I++ + ++ DT E ERGIT+K + ++Y+ D
Sbjct: 18 GKSTLADRLLEYTGAISEREKRE-QLLDTLDVERERGITVKMQAVRMFYKAKD------- 69
Query: 83 GERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGER 142
GN Y ++LID+PGHVDFS EV+ AL +GAL+++D +G+ QT +A+ +
Sbjct: 70 ----GNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQD 125
Query: 143 IRPVLTVNKMD 153
+ + +NK+D
Sbjct: 126 LVIIPVINKID 136
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 84/207 (40%), Gaps = 31/207 (14%)
Query: 363 DPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIM--GPNYVPGE------KK 414
DP+ PL + +G AF R+F G+V G K+ +M G Y E K
Sbjct: 188 DPQKPLKALIFDSYYDPYRGAV-AFVRIFDGEVKPGDKIMLMSTGKEYEVTEVGAQTPKM 246
Query: 415 DLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMK 474
+ K V ++ + V D+ G+T+ T+ K P+ +
Sbjct: 247 TKFDKLSAGDVGYIAASIKDVRDIRIGDTI---------------THAKNPTKEPVPGFQ 291
Query: 475 FSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEES---GEHIIAG-AGELHL 530
P+V + + +L + L++ A +D +V E S G G G LH+
Sbjct: 292 -PAKPMVYAGIYPAEDTTYEELRDALEKYAINDAAIVYEPESSPALGMGFRVGFLGLLHM 350
Query: 531 EICLKDLQDDFMGGAEIIKSDPVVSFR 557
EI + L+ ++ G +II + P V +R
Sbjct: 351 EIVQERLEREY--GVKIITTAPNVIYR 375
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 75/131 (57%), Gaps = 12/131 (9%)
Query: 23 GKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYR 82
GKSTL D L+ G I++ + ++ DT E ERGIT+K + +Y+ D
Sbjct: 18 GKSTLADRLLEYTGAISEREKRE-QLLDTLDVERERGITVKXQAVRXFYKAKD------- 69
Query: 83 GERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGER 142
GN Y ++LID+PGHVDFS EV+ AL +GAL+++D +G+ QT +A+ +
Sbjct: 70 ----GNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQD 125
Query: 143 IRPVLTVNKMD 153
+ + +NK+D
Sbjct: 126 LVIIPVINKID 136
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 81/207 (39%), Gaps = 31/207 (14%)
Query: 363 DPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRI--MGPNYVPGE------KK 414
DP+ PL + +G AF R+F G+V G K+ + G Y E K
Sbjct: 188 DPQKPLKALIFDSYYDPYRGAV-AFVRIFDGEVKPGDKIXLXSTGKEYEVTEVGAQTPKX 246
Query: 415 DLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMK 474
+ K V ++ + V D+ G+T+ T+ K P+ +
Sbjct: 247 TKFDKLSAGDVGYIAASIKDVRDIRIGDTI---------------THAKNPTKEPVPGFQ 291
Query: 475 FSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEES---GEHIIAG-AGELHL 530
P V + + +L + L++ A +D +V E S G G G LH
Sbjct: 292 -PAKPXVYAGIYPAEDTTYEELRDALEKYAINDAAIVYEPESSPALGXGFRVGFLGLLHX 350
Query: 531 EICLKDLQDDFMGGAEIIKSDPVVSFR 557
EI + L+ ++ G +II + P V +R
Sbjct: 351 EIVQERLEREY--GVKIITTAPNVIYR 375
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 113/474 (23%), Positives = 200/474 (42%), Gaps = 82/474 (17%)
Query: 324 LLEMMIFHLPSPATAQK---YRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASD 380
+L+ +I +LPSP + +R N P ++ A A + E + + P
Sbjct: 270 MLDAVIDYLPSPLDVKPIIGHRASN----PEEEVIAKA--DDSAEFAALAFKVMTDPYVG 323
Query: 381 KGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPC 440
K FF RV+SG + +G V+ N G+++ V R + ++ ++ V
Sbjct: 324 KLTFF---RVYSGTMTSGSYVK----NSTKGKRE-----RVGRLLQMHANSRQEIDTVYS 371
Query: 441 GNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGL 500
G+ A VGL T + TL EK + + +M+F PV+ ++V+ K +D K+ + L
Sbjct: 372 GDIAAAVGLKDTGTGD-TLCGEK--NDIILESMEFP-EPVIHLSVEPKSKADQDKMTQAL 427
Query: 501 KRLAKSDPMVVCSM-EESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRET 559
+L + DP EE+G+ II G GELHL+I + ++ +F E P+VS+RET
Sbjct: 428 VKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEF--NVECNVGAPMVSYRET 485
Query: 560 VLEKSCRTVMSK------SPNKHNRLYMEARPLEEGLAEAIDDGRIG---PRDDPKVRSK 610
KS V K ++ +++E P E G ++ +G PR+
Sbjct: 486 F--KSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPRE------Y 537
Query: 611 ILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALA 670
I S E G + +++ V+AG+ + L
Sbjct: 538 IPSVEAGLK------------------------------DAMENGVLAGYPLIDVKAKLY 567
Query: 671 EENMRGI-CFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPALGGIYSVL 729
+ + + E+ + + A+ + P VI + + E +G I +
Sbjct: 568 DGSYHDVDSSEMAFKIAASLALKEAAKKCDP----VILEPMMKVTIEMPEEYMGDIMGDV 623
Query: 730 NQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHW 783
+RG V + P + AY+P+ E FG++++LR+ T G+ FDH+
Sbjct: 624 TSRRGRV--DGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQGRGTYTMYFDHY 675
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 72/135 (53%), Gaps = 18/135 (13%)
Query: 22 AGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALK 79
AGK+T T+ ++ G I + E D + E +RGITI S + +E
Sbjct: 21 AGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE------- 73
Query: 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL 139
G R +N+ID+PGHVD + EV +LR+ DGA+ V+D GV QTETV RQA
Sbjct: 74 ---GHR------VNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQAT 124
Query: 140 GERIRPVLTVNKMDR 154
+ ++ VNKMD+
Sbjct: 125 TYGVPRIVFVNKMDK 139
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 113/474 (23%), Positives = 200/474 (42%), Gaps = 82/474 (17%)
Query: 324 LLEMMIFHLPSPATAQK---YRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASD 380
+L+ +I +LPSP + +R N P ++ A A + E + + P
Sbjct: 270 MLDAVIDYLPSPLDVKPIIGHRASN----PEEEVIAKA--DDSAEFAALAFKVMTDPYVG 323
Query: 381 KGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPC 440
K FF RV+SG + +G V+ N G+++ V R + ++ ++ V
Sbjct: 324 KLTFF---RVYSGTMTSGSYVK----NSTKGKRE-----RVGRLLQMHANSRQEIDTVYS 371
Query: 441 GNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGL 500
G+ A VGL T + TL EK + + +M+F PV+ ++V+ K +D K+ + L
Sbjct: 372 GDIAAAVGLKDTGTGD-TLCGEK--NDIILESMEFP-EPVIHLSVEPKSKADQDKMTQAL 427
Query: 501 KRLAKSDPMVVCSM-EESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRET 559
+L + DP EE+G+ II G GELHL+I + ++ +F E P+VS+RET
Sbjct: 428 VKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEF--NVECNVGAPMVSYRET 485
Query: 560 VLEKSCRTVMSK------SPNKHNRLYMEARPLEEGLAEAIDDGRIG---PRDDPKVRSK 610
KS V K ++ +++E P E G ++ +G PR+
Sbjct: 486 F--KSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPRE------Y 537
Query: 611 ILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALA 670
I S E G + +++ V+AG+ + L
Sbjct: 538 IPSVEAGLK------------------------------DAMENGVLAGYPLIDVKAKLY 567
Query: 671 EENMRGI-CFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPALGGIYSVL 729
+ + + E+ + + A+ + P VI + + E +G I +
Sbjct: 568 DGSYHDVDSSEMAFKIAASLALKEAAKKCDP----VILEPMMKVTIEMPEEYMGDIMGDV 623
Query: 730 NQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHW 783
+RG V + P + AY+P+ E FG++++LR+ T G+ FDH+
Sbjct: 624 TSRRGRV--DGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQGRGTYTMYFDHY 675
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 73/135 (54%), Gaps = 18/135 (13%)
Query: 22 AGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALK 79
AGK+T T+ ++ G I + E D + E +RGITI S + +E
Sbjct: 21 AGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE------- 73
Query: 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL 139
G R +N+ID+PGHVDF+ EV +LR+ DGA+ V+D GV QTETV RQA
Sbjct: 74 ---GHR------VNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQAT 124
Query: 140 GERIRPVLTVNKMDR 154
+ ++ VNKMD+
Sbjct: 125 TYGVPRIVFVNKMDK 139
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 113/474 (23%), Positives = 200/474 (42%), Gaps = 82/474 (17%)
Query: 324 LLEMMIFHLPSPATAQK---YRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASD 380
+L+ +I +LPSP + +R N P ++ A A + E + + P
Sbjct: 270 MLDAVIDYLPSPLDVKPIIGHRASN----PEEEVIAKA--DDSAEFAALAFKVMTDPYVG 323
Query: 381 KGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPC 440
K FF RV+SG + +G V+ N G+++ V R + ++ ++ V
Sbjct: 324 KLTFF---RVYSGTMTSGSYVK----NSTKGKRE-----RVGRLLQMHANSRQEIDTVYS 371
Query: 441 GNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGL 500
G+ A VGL T + TL EK + + +M+F PV+ ++V+ K +D K+ + L
Sbjct: 372 GDIAAAVGLKDTGTGD-TLCGEK--NDIILESMEFP-EPVIHLSVEPKSKADQDKMTQAL 427
Query: 501 KRLAKSDPMVVCSM-EESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRET 559
+L + DP EE+G+ II G GELHL+I + ++ +F E P+VS+RET
Sbjct: 428 VKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEF--NVECNVGAPMVSYRET 485
Query: 560 VLEKSCRTVMSK------SPNKHNRLYMEARPLEEGLAEAIDDGRIG---PRDDPKVRSK 610
KS V K ++ +++E P E G ++ +G PR+
Sbjct: 486 F--KSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPRE------Y 537
Query: 611 ILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALA 670
I S E G + +++ V+AG+ + L
Sbjct: 538 IPSVEAGLK------------------------------DAMENGVLAGYPLIDVKAKLY 567
Query: 671 EENMRGI-CFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPALGGIYSVL 729
+ + + E+ + + A+ + P VI + + E +G I +
Sbjct: 568 DGSYHDVDSSEMAFKIAASLALKEAAKKCDP----VILEPMMKVTIEMPEEYMGDIMGDV 623
Query: 730 NQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHW 783
+RG V + P + AY+P+ E FG++++LR+ T G+ FDH+
Sbjct: 624 TSRRGRV--DGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQGRGTYTMYFDHY 675
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 73/135 (54%), Gaps = 18/135 (13%)
Query: 22 AGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALK 79
AGK+T T+ ++ G I + E D + E +RGITI S + +E
Sbjct: 21 AGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE------- 73
Query: 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL 139
G R +N+ID+PGHVDF+ EV +LR+ DGA+ V+D GV QTETV RQA
Sbjct: 74 ---GHR------VNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQAT 124
Query: 140 GERIRPVLTVNKMDR 154
+ ++ VNKMD+
Sbjct: 125 TYGVPRIVFVNKMDK 139
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 113/474 (23%), Positives = 200/474 (42%), Gaps = 82/474 (17%)
Query: 324 LLEMMIFHLPSPATAQK---YRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASD 380
+L+ +I +LPSP + +R N P ++ A A + E + + P
Sbjct: 270 MLDAVIDYLPSPLDVKPIIGHRASN----PEEEVIAKA--DDSAEFAALAFKVMTDPYVG 323
Query: 381 KGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPC 440
K FF RV+SG + +G V+ N G+++ V R + ++ ++ V
Sbjct: 324 KLTFF---RVYSGTMTSGSYVK----NSTKGKRE-----RVGRLLQMHANSRQEIDTVYS 371
Query: 441 GNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGL 500
G+ A VGL T + TL EK + + +M+F PV+ ++V+ K +D K+ + L
Sbjct: 372 GDIAAAVGLKDTGTGD-TLCGEK--NDIILESMEFP-EPVIHLSVEPKSKADQDKMTQAL 427
Query: 501 KRLAKSDPMVVCSM-EESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRET 559
+L + DP EE+G+ II G GELHL+I + ++ +F E P+VS+RET
Sbjct: 428 VKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEF--NVECNVGAPMVSYRET 485
Query: 560 VLEKSCRTVMSK------SPNKHNRLYMEARPLEEGLAEAIDDGRIG---PRDDPKVRSK 610
KS V K ++ +++E P E G ++ +G PR+
Sbjct: 486 F--KSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPRE------Y 537
Query: 611 ILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALA 670
I S E G + +++ V+AG+ + L
Sbjct: 538 IPSVEAGLK------------------------------DAMENGVLAGYPLIDVKAKLY 567
Query: 671 EENMRGI-CFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPALGGIYSVL 729
+ + + E+ + + A+ + P VI + + E +G I +
Sbjct: 568 DGSYHDVDSSEMAFKIAASLALKEAAKKCDP----VILEPMMKVTIEMPEEYMGDIMGDV 623
Query: 730 NQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHW 783
+RG V + P + AY+P+ E FG++++LR+ T G+ FDH+
Sbjct: 624 TSRRGRV--DGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQGRGTYTMYFDHY 675
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 72/135 (53%), Gaps = 18/135 (13%)
Query: 22 AGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALK 79
AGK+T T+ ++ G I + E D + E +RGITI S + +E
Sbjct: 21 AGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE------- 73
Query: 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL 139
G R +N+ID+PGHVD + EV +LR+ DGA+ V+D GV QTETV RQA
Sbjct: 74 ---GHR------VNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQAT 124
Query: 140 GERIRPVLTVNKMDR 154
+ ++ VNKMD+
Sbjct: 125 TYGVPRIVFVNKMDK 139
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 74/131 (56%), Gaps = 12/131 (9%)
Query: 23 GKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYR 82
GKSTL+D ++ G ++ + ++ D+ E ERGITIK+ ++L Y+ +D
Sbjct: 16 GKSTLSDRIIQICGGLSDR-EMEAQVLDSMDLERERGITIKAQSVTLDYKASD------- 67
Query: 83 GERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGER 142
G Y +N ID+PGHVDFS EV+ +L +GAL+VVD +GV QT A+
Sbjct: 68 ----GETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMD 123
Query: 143 IRPVLTVNKMD 153
+ V +NK+D
Sbjct: 124 LEVVPVLNKID 134
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 74/131 (56%), Gaps = 12/131 (9%)
Query: 23 GKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYR 82
GKSTL+D ++ G ++ + ++ D+ E ERGITIK+ ++L Y+ +D
Sbjct: 16 GKSTLSDRIIQICGGLSDR-EMEAQVLDSMDLERERGITIKAQSVTLDYKASD------- 67
Query: 83 GERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGER 142
G Y +N ID+PGHVDFS EV+ +L +GAL+VVD +GV QT A+
Sbjct: 68 ----GETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMD 123
Query: 143 IRPVLTVNKMD 153
+ V +NK+D
Sbjct: 124 LEVVPVLNKID 134
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 75/142 (52%), Gaps = 22/142 (15%)
Query: 22 AGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQD----EAERGITIKSTGISLYYEMTDAA 77
AGK+TLT+SL+ +G I + G V TR D E +RGITI++ S +E T
Sbjct: 13 AGKTTLTESLLYNSGAITE--LGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTK-- 68
Query: 78 LKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ 137
+N+ID+PGH+DF +EV +L + DGA++++ +GV QT +
Sbjct: 69 --------------VNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHA 114
Query: 138 ALGERIRPVLTVNKMDRCFLEL 159
I + +NK+D+ ++L
Sbjct: 115 LRKMGIPTIFFINKIDQNGIDL 136
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 77/156 (49%), Gaps = 33/156 (21%)
Query: 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVR--------MTDTRQDEAERG 59
T ++ PDA GK+TLT+ L+ G I ++AG V+ +D E ERG
Sbjct: 33 TFAIISHPDA-----GKTTLTEKLLLFGGAI--QMAGSVKARKAARHATSDWMAMERERG 85
Query: 60 ITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALV 119
I++ ++ + Y + ++NL+D+PGH DFS + L D ALV
Sbjct: 86 ISVTTSVMQFPY----------------RDRVVNLLDTPGHQDFSEDTYRVLTAVDSALV 129
Query: 120 VVDCIEGVCVQTETVLRQALGERIRPVLT-VNKMDR 154
V+D +GV QT ++ R PV+T VNKMDR
Sbjct: 130 VIDAAKGVEAQTRKLM-DVCRMRATPVMTFVNKMDR 164
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 72/154 (46%), Gaps = 29/154 (18%)
Query: 8 TISVCLGPDANSTFAGKSTLTDSL------VAAAGIIAQEVAGDVRMTDTRQDEAERGIT 61
T ++ PDA GK+TLT+ L + AG I A +D + E +RGI+
Sbjct: 15 TFAIISHPDA-----GKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWXELEKQRGIS 69
Query: 62 IKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVV 121
+ ++ Y+ +YLINL+D+PGH DF+ + L D AL V+
Sbjct: 70 VTTSVXQFPYK----------------DYLINLLDTPGHADFTEDTYRTLTAVDSALXVI 113
Query: 122 DCIEGVCVQTETVLRQALGERIRPVLT-VNKMDR 154
D +GV +T L + R P+ T +NK DR
Sbjct: 114 DAAKGVEPRT-IKLXEVCRLRHTPIXTFINKXDR 146
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 19/149 (12%)
Query: 8 TISVCLGPDA-NSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG 66
T ++ PDA +T K L + AG + + +D + E +RGI+I ++
Sbjct: 15 TFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSV 74
Query: 67 ISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 126
+ Y ++ L+NL+D+PGH DFS + L D L+V+D +G
Sbjct: 75 MQFPY----------------HDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKG 118
Query: 127 VCVQTETVLRQALGERIRPVLT-VNKMDR 154
V +T ++ + R P+LT +NK+DR
Sbjct: 119 VEDRTRKLM-EVTRLRDTPILTFMNKLDR 146
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 29/154 (18%)
Query: 8 TISVCLGPDANSTFAGKSTLTDSL------VAAAGIIAQEVAGDVRMTDTRQDEAERGIT 61
T ++ PDA GK+T+T+ + + AG + + +D + E +RGI+
Sbjct: 15 TFAIISHPDA-----GKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGIS 69
Query: 62 IKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVV 121
I ++ + Y ++ L+NL+D+PGH DFS + L D L+V+
Sbjct: 70 ITTSVMQFPY----------------HDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVI 113
Query: 122 DCIEGVCVQTETVLRQALGERIRPVLT-VNKMDR 154
D +GV +T ++ + R P+LT +NK+DR
Sbjct: 114 DAAKGVEDRTRKLM-EVTRLRDTPILTFMNKLDR 146
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 479 PVVRVAVQCKVASDLPKLVEGLKRLAKSDP-MVVCSMEESGEHIIAGAGELHLEICLKDL 537
P V VA+ K +D +L E L++L + DP + + EE+GE ++ G GELHL + L
Sbjct: 381 PNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERL 440
Query: 538 QDDFMGGAEIIKSDPVVSFRETV 560
QD G E+ S P V +RET+
Sbjct: 441 QDY---GVEVEFSVPKVPYRETI 460
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 64/136 (47%), Gaps = 20/136 (14%)
Query: 22 AGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQD---EAERGITIKSTGISLYYEMTDAAL 78
+GK+TLT++L+ G A+E G V T D EA+ T TG++
Sbjct: 20 SGKTTLTEALLYKTG--AKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLL------- 70
Query: 79 KSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA 138
+RG R + L+D+PG+ DF E+ AL D ALV V GV V TE A
Sbjct: 71 --FRGHR------VFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVA 122
Query: 139 LGERIRPVLTVNKMDR 154
+ ++ V K+D+
Sbjct: 123 ERLGLPRMVVVTKLDK 138
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 47/109 (43%), Gaps = 25/109 (22%)
Query: 23 GKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYR 82
GK+TL+ L A A D + +RGITI D +++
Sbjct: 31 GKTTLSKVLTEIASTSAH---------DKLPESQKRGITI------------DIGFSAFK 69
Query: 83 GERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT 131
E Y I L+D+PGH D V +A I D AL+VVD EG QT
Sbjct: 70 LEN----YRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQT 114
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%)
Query: 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVL 147
N+ I +D+PGH F++ ++TD ++VV +GV QT + A + ++
Sbjct: 53 NDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIV 112
Query: 148 TVNKMDR 154
+NKMD+
Sbjct: 113 AINKMDK 119
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 66/155 (42%), Gaps = 41/155 (26%)
Query: 23 GKSTLTDSLVAAAGII-------AQEVAGDVR--------MTDTRQDEAERGITIKSTGI 67
GKSTL L+ G I A+E A + + D ++E ERG+TI T +
Sbjct: 18 GKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFM 77
Query: 68 SLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-- 125
+ +Y +ID+PGH DF + D A++VV +
Sbjct: 78 RF----------------ETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGE 121
Query: 126 ---GVCVQTET----VLRQALGERIRPVLTVNKMD 153
G+ V+ +T +L + +G + ++ VNKMD
Sbjct: 122 YEAGMSVEGQTREHIILAKTMGLD-QLIVAVNKMD 155
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 92 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNK 151
I +D+PGH FS+ ++TD ++VV +GV QT ++ A + VL +NK
Sbjct: 54 ITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINK 113
Query: 152 MDRC 155
D+
Sbjct: 114 CDKA 117
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 28/116 (24%)
Query: 48 MTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEV 107
+ D ++E ERGITI T + + +Y+ +ID+PGH DF +
Sbjct: 58 ILDKMKEERERGITIDLTFMKF----------------ETKKYVFTIIDAPGHRDFVKNM 101
Query: 108 TAALRITDGALVVVDCIEG---VCVQTETVLRQAL-------GERIRPVLTVNKMD 153
D A++VV +G + TE R+ L E+I ++ VNKMD
Sbjct: 102 ITGASQADAAILVVSARKGEFEAGMSTEGQTREHLLLARTMGIEQI--IVAVNKMD 155
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 28/116 (24%)
Query: 48 MTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEV 107
+ D ++E ERGITI T + + +Y+ +ID+PGH DF +
Sbjct: 61 ILDKMKEERERGITIDLTFMKF----------------ETKKYVFTIIDAPGHRDFVKNM 104
Query: 108 TAALRITDGALVVVDCIEG---VCVQTETVLRQAL-------GERIRPVLTVNKMD 153
D A++VV +G + TE R+ L E+I ++ VNKMD
Sbjct: 105 ITGASQADAAILVVSARKGEFEAGMSTEGQTREHLLLARTMGIEQI--IVAVNKMD 158
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 32/164 (19%)
Query: 23 GKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKS-------TGISLYYEMTD 75
GK+TLT +L TDT +E RGITIK S +
Sbjct: 23 GKTTLTKALTGV-------------WTDTHSEELRRGITIKIGFADAEIRRCSNCGRYST 69
Query: 76 AALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-- 133
+ + Y G ++ IDSPGH + + A + DGA++V+ E C + +T
Sbjct: 70 SPICPYCGHETEFIRRVSFIDSPGHEALMTTMLAGASLMDGAILVIAANE-PCPRPQTRE 128
Query: 134 --VLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIE 175
+ Q +G++ ++ NK++ VD E+A + ++++ E
Sbjct: 129 HLMALQIIGQK-NIIIAQNKIE------LVDKEKALENYRQIKE 165
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 26/137 (18%)
Query: 23 GKSTLTDSLVAAAGIIAQEVAGDVR---MTDTRQDEAERGITIKSTGISLYYEMTDAALK 79
GK+TLT ++ ++A+ G R D +E RGITI ++ + D +
Sbjct: 308 GKTTLTAAITT---VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY-----DTPTR 359
Query: 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQA 138
Y +D PGH D+ + DGA++VV +G QT E +L
Sbjct: 360 HYAH-----------VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL--- 405
Query: 139 LGERIRPVLTVNKMDRC 155
LG ++ + +++C
Sbjct: 406 LGRQVGVPYIIVFLNKC 422
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 26/137 (18%)
Query: 23 GKSTLTDSLVAAAGIIAQEVAGDVR---MTDTRQDEAERGITIKSTGISLYYEMTDAALK 79
GK+TLT ++ ++A+ G R D +E RGITI ++ + D +
Sbjct: 24 GKTTLTAAITT---VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY-----DTPTR 75
Query: 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQA 138
Y +D PGH D+ + DGA++VV +G QT E +L
Sbjct: 76 HY-----------AHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL--- 121
Query: 139 LGERIRPVLTVNKMDRC 155
LG ++ + +++C
Sbjct: 122 LGRQVGVPYIIVFLNKC 138
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 52/113 (46%), Gaps = 23/113 (20%)
Query: 23 GKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRQDEAERGITIKSTGISLYYEMTDAAL 78
GK+TLT +L VAAA EV GD+ D +E RGITI + + YE A
Sbjct: 23 GKTTLTAALTYVAAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE--YE---TAK 74
Query: 79 KSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT 131
+ Y + +D PGH D+ + DGA++VV +G QT
Sbjct: 75 RHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQT 116
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 26/137 (18%)
Query: 23 GKSTLTDSLVAAAGIIAQEVAGDVR---MTDTRQDEAERGITIKSTGISLYYEMTDAALK 79
GK+TLT ++ ++A+ G R D +E RGITI ++ + D +
Sbjct: 23 GKTTLTAAITT---VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY-----DTPTR 74
Query: 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQA 138
Y +D PGH D+ + DGA++VV +G QT E +L
Sbjct: 75 HY-----------AHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL--- 120
Query: 139 LGERIRPVLTVNKMDRC 155
LG ++ + +++C
Sbjct: 121 LGRQVGVPYIIVFLNKC 137
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 52/113 (46%), Gaps = 23/113 (20%)
Query: 23 GKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRQDEAERGITIKSTGISLYYEMTDAAL 78
GK+TLT +L VAAA EV GD+ D +E RGITI + + YE A
Sbjct: 24 GKTTLTAALTYVAAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE--YE---TAK 75
Query: 79 KSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT 131
+ Y + +D PGH D+ + DGA++VV +G QT
Sbjct: 76 RHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQT 117
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 52/113 (46%), Gaps = 23/113 (20%)
Query: 23 GKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRQDEAERGITIKSTGISLYYEMTDAAL 78
GK+TLT +L VAAA EV GD+ D +E RGITI + + YE A
Sbjct: 23 GKTTLTAALTYVAAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE--YE---TAK 74
Query: 79 KSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT 131
+ Y + +D PGH D+ + DGA++VV +G QT
Sbjct: 75 RHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQT 116
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 52/113 (46%), Gaps = 23/113 (20%)
Query: 23 GKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRQDEAERGITIKSTGISLYYEMTDAAL 78
GK+TLT +L VAAA EV GD+ D +E RGITI + + YE A
Sbjct: 23 GKTTLTAALTYVAAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE--YE---TAK 74
Query: 79 KSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT 131
+ Y + +D PGH D+ + DGA++VV +G QT
Sbjct: 75 RHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQT 116
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 26/137 (18%)
Query: 23 GKSTLTDSLVAAAGIIAQEVAGDVR---MTDTRQDEAERGITIKSTGISLYYEMTDAALK 79
GK+TLT ++ ++A+ G R D +E RGITI ++ + D +
Sbjct: 23 GKTTLTAAITT---VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY-----DTPTR 74
Query: 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQA 138
Y +D PGH D+ + DGA++VV +G QT E +L
Sbjct: 75 HY-----------AHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL--- 120
Query: 139 LGERIRPVLTVNKMDRC 155
LG ++ + +++C
Sbjct: 121 LGRQVGVPYIIVFLNKC 137
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 52/113 (46%), Gaps = 23/113 (20%)
Query: 23 GKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRQDEAERGITIKSTGISLYYEMTDAAL 78
GK+TLT +L VAAA EV GD+ D +E RGITI + + YE A
Sbjct: 23 GKTTLTAALTYVAAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE--YE---TAK 74
Query: 79 KSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT 131
+ Y + +D PGH D+ + DGA++VV +G QT
Sbjct: 75 RHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQT 116
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 52/113 (46%), Gaps = 23/113 (20%)
Query: 23 GKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRQDEAERGITIKSTGISLYYEMTDAAL 78
GK+TLT +L VAAA EV GD+ D +E RGITI + + YE A
Sbjct: 23 GKTTLTAALTYVAAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE--YE---TAK 74
Query: 79 KSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT 131
+ Y + +D PGH D+ + DGA++VV +G QT
Sbjct: 75 RHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQT 116
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 26/137 (18%)
Query: 23 GKSTLTDSLVAAAGIIAQEVAGDVR---MTDTRQDEAERGITIKSTGISLYYEMTDAALK 79
GK+TLT ++ ++A+ G R D +E RGITI ++ + D +
Sbjct: 24 GKTTLTAAITT---VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY-----DTPTR 75
Query: 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQA 138
Y +D PGH D+ + DGA++VV +G QT E +L
Sbjct: 76 HY-----------AHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL--- 121
Query: 139 LGERIRPVLTVNKMDRC 155
LG ++ + +++C
Sbjct: 122 LGRQVGVPYIIVFLNKC 138
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 26/137 (18%)
Query: 23 GKSTLTDSLVAAAGIIAQEVAGDVR---MTDTRQDEAERGITIKSTGISLYYEMTDAALK 79
GK+TLT ++ ++A+ G R D +E RGITI ++ + D +
Sbjct: 23 GKTTLTAAITT---VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY-----DTPTR 74
Query: 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQA 138
Y +D PGH D+ + DGA++VV +G QT E +L
Sbjct: 75 HY-----------AHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL--- 120
Query: 139 LGERIRPVLTVNKMDRC 155
LG ++ + +++C
Sbjct: 121 LGRQVGVPYIIVFLNKC 137
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 26/137 (18%)
Query: 23 GKSTLTDSLVAAAGIIAQEVAGDVR---MTDTRQDEAERGITIKSTGISLYYEMTDAALK 79
GK+TLT ++ ++A+ G R D +E RGITI ++ + D +
Sbjct: 15 GKTTLTAAITT---VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY-----DTPTR 66
Query: 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQA 138
Y +D PGH D+ + DGA++VV +G QT E +L
Sbjct: 67 HY-----------AHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL--- 112
Query: 139 LGERIRPVLTVNKMDRC 155
LG ++ + +++C
Sbjct: 113 LGRQVGVPYIIVFLNKC 129
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 46/171 (26%)
Query: 23 GKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALK--- 79
GK+TLT +L TDT +E RGITIK DA ++
Sbjct: 22 GKTTLTKALTGV-------------WTDTHSEELRRGITIK-------IGFADAEIRRCP 61
Query: 80 -----------SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 128
Y G ++ ID+PGH + + A + DGA++V+ E C
Sbjct: 62 NCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANE-PC 120
Query: 129 VQTET----VLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIE 175
+ +T + Q +G++ ++ NK++ VD E+A + ++++ E
Sbjct: 121 PRPQTREHLMALQIIGQK-NIIIAQNKIE------LVDKEKALENYRQIKE 164
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 46/171 (26%)
Query: 23 GKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALK--- 79
GK+TLT +L TDT +E RGITIK DA ++
Sbjct: 22 GKTTLTKALTGV-------------WTDTHSEELRRGITIK-------IGFADAEIRRCP 61
Query: 80 -----------SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 128
Y G ++ ID+PGH + + A + DGA++V+ E C
Sbjct: 62 NCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANE-PC 120
Query: 129 VQTET----VLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIE 175
+ +T + Q +G++ ++ NK++ VD E+A + ++++ E
Sbjct: 121 PRPQTREHLMALQIIGQK-NIIIAQNKIE------LVDKEKALENYRQIKE 164
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 76/175 (43%), Gaps = 34/175 (19%)
Query: 48 MTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEV 107
+ DT ++E RG+T+ D A ++ +++ + + D+PGH DF S +
Sbjct: 229 LLDTTEEERARGVTM------------DVASTTFESDKK----IYEIGDAPGHRDFISGM 272
Query: 108 TAALRITDGALVVVDC---------IEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLE 158
A D A++VVD +E + L +ALG V++VNK+D
Sbjct: 273 IAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGIS-EIVVSVNKLD----- 326
Query: 159 LQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAF---SAGLHGW 210
L E+ +Q + ++ + + M ++ + V + GT S+ L+ W
Sbjct: 327 LMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKW 381
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 26/137 (18%)
Query: 23 GKSTLTDSLVAAAGIIAQEVAGDVR---MTDTRQDEAERGITIKSTGISLYYEMTDAALK 79
GK+TLT ++ ++A+ G R D +E RGITI ++ + D +
Sbjct: 308 GKTTLTAAITT---VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY-----DTPTR 359
Query: 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQA 138
Y +D PGH D+ + DGA++VV +G QT E +L
Sbjct: 360 HY-----------AHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL--- 405
Query: 139 LGERIRPVLTVNKMDRC 155
LG ++ + +++C
Sbjct: 406 LGRQVGVPYIIVFLNKC 422
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%)
Query: 94 LIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 153
ID+PGH F++ + D A+++VD EG QT+ L R V+ NK+D
Sbjct: 74 FIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRXYRTPFVVAANKID 133
Query: 154 RCFLELQVDGEEAYQTFQK 172
R +G +TF K
Sbjct: 134 RIHGWRVHEGRPFXETFSK 152
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%)
Query: 94 LIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 153
ID+PGH F++ + D A+++VD EG QT+ L R V+ NK+D
Sbjct: 74 FIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKID 133
Query: 154 RCFLELQVDGEEAYQTFQK 172
R +G +TF K
Sbjct: 134 RIHGWRVHEGRPFMETFSK 152
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 70/171 (40%), Gaps = 46/171 (26%)
Query: 23 GKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALK--- 79
GK+TLT +L TDT +E RGITIK DA ++
Sbjct: 22 GKTTLTKALTGV-------------WTDTHSEELRRGITIK-------IGFADAEIRRCP 61
Query: 80 -----------SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 128
Y G ++ ID+PGH + A + DGA++V+ E C
Sbjct: 62 NCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALXTTXLAGASLXDGAILVIAANE-PC 120
Query: 129 VQTET----VLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIE 175
+ +T Q +G++ ++ NK++ VD E+A + ++++ E
Sbjct: 121 PRPQTREHLXALQIIGQK-NIIIAQNKIE------LVDKEKALENYRQIKE 164
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 65/137 (47%), Gaps = 26/137 (18%)
Query: 23 GKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRQDEAERGITIKSTGISLYYEMTDAAL 78
GK+TLT +L VAAA EV GD+ D ++E RGITI + + YE A
Sbjct: 23 GKTTLTAALTYVAAAENRNVEVKDYGDI---DKAREERARGITINTAHVE--YE---TAK 74
Query: 79 KSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT--ETVLR 136
+ Y + +D GH D+ + DGA++VV +G QT +L
Sbjct: 75 RHY-----------SHVDCRGHADYIKNMITGAAQMDGAILVVSAADGRMRQTREHILLA 123
Query: 137 QALGERIRPVLTVNKMD 153
+ +G R V+ +NK+D
Sbjct: 124 RQVGVRY-IVVFMNKVD 139
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 45/117 (38%), Gaps = 31/117 (26%)
Query: 22 AGKSTLTDSLVAAAGIIAQ----------EVAGDVR-----MTDTRQDEAERGITIKSTG 66
AGKSTL L+ I+ Q E G + D +E ERG+T+
Sbjct: 44 AGKSTLXGRLLYDLNIVNQSQLRKLQRESETXGKSSFKFAWIXDQTNEERERGVTV---- 99
Query: 67 ISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDC 123
+ + ++R ++D+PGH DF + D A++ VDC
Sbjct: 100 -----SICTSHFSTHRAN-------FTIVDAPGHRDFVPNAIXGISQADXAILCVDC 144
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 35.8 bits (81), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 51/113 (45%), Gaps = 23/113 (20%)
Query: 23 GKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRQDEAERGITIKSTGISLYYEMTDAAL 78
GK+TLT +L V AA EV GD+ D +E RGITI + + YE A
Sbjct: 23 GKTTLTAALTYVTAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE--YE---TAK 74
Query: 79 KSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT 131
+ Y + +D PGH D+ + DGA++VV +G QT
Sbjct: 75 RHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQT 116
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 35.8 bits (81), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 51/113 (45%), Gaps = 23/113 (20%)
Query: 23 GKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRQDEAERGITIKSTGISLYYEMTDAAL 78
GK+TLT +L V AA EV GD+ D +E RGITI + + YE A
Sbjct: 23 GKTTLTAALTFVTAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE--YE---TAK 74
Query: 79 KSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT 131
+ Y + +D PGH D+ + DGA++VV +G QT
Sbjct: 75 RHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQT 116
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 35.8 bits (81), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 51/113 (45%), Gaps = 23/113 (20%)
Query: 23 GKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRQDEAERGITIKSTGISLYYEMTDAAL 78
GK+TLT +L V AA EV GD+ D +E RGITI + + YE A
Sbjct: 23 GKTTLTAALTYVTAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE--YE---TAK 74
Query: 79 KSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT 131
+ Y + +D PGH D+ + DGA++VV +G QT
Sbjct: 75 RHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQT 116
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 51/113 (45%), Gaps = 23/113 (20%)
Query: 23 GKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRQDEAERGITIKSTGISLYYEMTDAAL 78
GK+TLT +L V AA EV GD+ D +E RGITI + + YE A
Sbjct: 23 GKTTLTAALTFVTAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE--YE---TAK 74
Query: 79 KSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT 131
+ Y + +D PGH D+ + DGA++VV +G QT
Sbjct: 75 RHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQT 116
>pdb|1JQS|C Chain C, Fitting Of L11 Protein And Elongation Factor G (Domain G'
And V) In The Cryo-Em Map Of E. Coli 70s Ribosome Bound
With Ef-G And Gmppcp, A Nonhydrolysable Gtp Analog
Length = 68
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 719 EPALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQA 774
E +G + LN +RG + R + I+A++P+ E FG+++ LR+ T G+
Sbjct: 9 EEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEMFGYATDLRSKTQGRG 62
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 45/117 (38%), Gaps = 31/117 (26%)
Query: 22 AGKSTLTDSLVAAAGIIAQ----------EVAGDVR-----MTDTRQDEAERGITIKSTG 66
AGKSTL L+ I+ Q E G + D +E ERG+T+
Sbjct: 44 AGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTV---- 99
Query: 67 ISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDC 123
+ + ++R ++D+PGH DF + D A++ VDC
Sbjct: 100 -----SICTSHFSTHRAN-------FTIVDAPGHRDFVPNAIMGISQADMAILCVDC 144
>pdb|2R5T|A Chain A, Crystal Structure Of Inactive Serum And Glucocorticoid-
Regulated Kinase 1 In Complex With Amp-Pnp
pdb|3HDM|A Chain A, Crystal Structure Of Serum And Glucocorticoid-Regulated
Kinase 1 In Complex With Compound 1
pdb|3HDN|A Chain A, Crystal Structure Of Serum And Glucocorticoid-Regulated
Kinase 1 In Complex With Compound 2
Length = 373
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 583 ARPLEEGLAEAIDDGRIGPRDD-PKVRSKILSEEFGWDKDLAKKIW-CFGPETIGPN 637
AR L EGL + R+G +DD +++S + WD + KKI F P GPN
Sbjct: 266 ARHLLEGLLQKDRTKRLGAKDDFMEIKSHVFFSLINWDDLINKKITPPFNPNVSGPN 322
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 61/158 (38%), Gaps = 41/158 (25%)
Query: 22 AGKSTLTDSLVAAAGIIAQ----------EVAGDVR-----MTDTRQDEAERGITIKSTG 66
AGKSTL L+ I+ Q E G + D +E ERG+T+
Sbjct: 178 AGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVS--- 234
Query: 67 ISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCI-- 124
+ + ++R ++D+PGH DF + D A++ VDC
Sbjct: 235 ------ICTSHFSTHRAN-------FTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTN 281
Query: 125 ---EGVCVQTET----VLRQALGERIRPVLTVNKMDRC 155
G + +T +L +LG ++ +NKMD
Sbjct: 282 AFESGFDLDGQTKEHMLLASSLGIH-NLIIAMNKMDNV 318
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 80/191 (41%), Gaps = 50/191 (26%)
Query: 22 AGKSTLTDSLVAAAGII------------AQEVAGDVR---MTDTRQDEAERGITIKSTG 66
+GKST T L+ G I A+ G + + D + E ERGITI
Sbjct: 18 SGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITI---- 73
Query: 67 ISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVV----- 121
D AL + + Y + +ID+PGH DF + D A++++
Sbjct: 74 --------DIALWKFETPK----YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG 121
Query: 122 DCIEGVCVQTET----VLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVI-EN 176
+ G+ +T +L LG R + ++ VNKMD V +E+ FQ+++ E
Sbjct: 122 EFEAGISKDGQTREHALLAFTLGVR-QLIVAVNKMD------SVKWDES--RFQEIVKET 172
Query: 177 ANVIMATYEDP 187
+N I +P
Sbjct: 173 SNFIKKVGYNP 183
>pdb|3UJ3|X Chain X, Crystal Structure Of The Synaptic Tetramer Of The
G-Segment Invertase (Gin)
Length = 193
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 50/116 (43%), Gaps = 20/116 (17%)
Query: 491 SDLPKLVEGLKRLAKSDPMVVCSMEESG---EHIIAGAGELHLE-ICLKDLQDDFMGGAE 546
+D P L LKRL K D +VV ++ G +H+I+ GEL I + L D
Sbjct: 40 TDRPGLKRALKRLQKGDTLVVWKLDRLGRSMKHLISLVGELRERGINFRSLTD------S 93
Query: 547 IIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPR 602
I S P+ F VM L +E R + GLA A + GRIG R
Sbjct: 94 IDTSSPMGRF--------FFHVMGALAEVERELIIE-RTM-AGLAAARNKGRIGGR 139
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 91 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVN 150
+I +D+PGH F+S + TD ++VV +GV QT ++ A ++ V+ VN
Sbjct: 52 MITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVN 111
Query: 151 KMDR 154
K+D+
Sbjct: 112 KIDK 115
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 25/123 (20%)
Query: 48 MTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEV 107
+ D Q E E+GITI D A + + ++ +++I D+PGH ++
Sbjct: 78 LVDGLQAEREQGITI------------DVAYRYFSTAKR--KFII--ADTPGHEQYTRNX 121
Query: 108 TAALRITDGALVVVDCIEGVCVQT--ETVLRQALGERIRPVLTVNKMD------RCFLEL 159
D A+++VD GV QT + + LG + V+ +NK D R F +
Sbjct: 122 ATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIK-HIVVAINKXDLNGFDERVFESI 180
Query: 160 QVD 162
+ D
Sbjct: 181 KAD 183
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 34/134 (25%)
Query: 23 GKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYR 82
GK+TLT ++ ++A+ G A RGITI ++ + D + Y
Sbjct: 23 GKTTLTAAITT---VLAKTYGG-----------AARGITINTSHVEY-----DTPTRHY- 62
Query: 83 GERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALGE 141
+D PGH D+ + DGA++VV +G QT E +L LG
Sbjct: 63 ----------AHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL---LGR 109
Query: 142 RIRPVLTVNKMDRC 155
++ + +++C
Sbjct: 110 QVGVPYIIVFLNKC 123
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 56/137 (40%), Gaps = 27/137 (19%)
Query: 23 GKSTLTDSLVAAAGIIAQEVAGDVRM---TDTRQDEAERGITIKSTGISLYYEMTDAALK 79
GK+TLT A I+A+ + D +E RGITI + + E + AA +
Sbjct: 15 GKTTLT---AAITKILAEGGGAKFKKYEEIDNAPEERARGITINAA----HVEYSTAA-R 66
Query: 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL---R 136
Y D PGH D+ + DG ++VV +G QT L R
Sbjct: 67 HYAH-----------TDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLAR 115
Query: 137 QALGERIRPVLTVNKMD 153
Q E + V+ VNK D
Sbjct: 116 QIGVEHV--VVYVNKAD 130
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 95 IDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALGERIRPVLTVNKMD 153
+D PGH D+ + DGA++VV +G QT E +L LG ++ + ++
Sbjct: 21 VDXPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL---LGRQVGVPYIIVFLN 77
Query: 154 RC 155
+C
Sbjct: 78 KC 79
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 55/137 (40%), Gaps = 27/137 (19%)
Query: 23 GKSTLTDSLVAAAGIIAQEVAGDVRM---TDTRQDEAERGITIKSTGISLYYEMTDAALK 79
GK+TLT A I+A+ + D +E RGITI + + E + AA +
Sbjct: 26 GKTTLT---AAITKILAEGGGAKFKKYEEIDNAPEERARGITINAA----HVEYSTAA-R 77
Query: 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL---R 136
Y D PGH D+ DG ++VV +G QT L R
Sbjct: 78 HYAH-----------TDCPGHADYVKNXITGTAPLDGCILVVAANDGPXPQTREHLLLAR 126
Query: 137 QALGERIRPVLTVNKMD 153
Q E + V+ VNK D
Sbjct: 127 QIGVEHV--VVYVNKAD 141
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 95 IDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALGERIRPVLTVNKMD 153
+D PGH D+ + DGA++VV +G QT E +L LG ++ + ++
Sbjct: 21 VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL---LGRQVGVPYIIVFLN 77
Query: 154 RC 155
+C
Sbjct: 78 KC 79
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 512
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 18/184 (9%)
Query: 507 DPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDF--MGGAEI-IKSDP----VVSFRET 559
D + VC + SG H + LH + K+ + D + A+I + S P + + T
Sbjct: 184 DNIRVCKILGSGVH---SSSVLHGMVFKKETEGDVTSVKDAKIAVYSCPFDGMITETKGT 240
Query: 560 VLEKSCRTVMSKSPNKHNRLYMEARPLEE-GLAEAIDDGRIGP---RDDPKVRSKILSEE 615
VL KS +M+ S + N + + + + + G + GR+ K ++
Sbjct: 241 VLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKYNIMLVRLN 300
Query: 616 FGWD-KDLAKKIWCFGPETIGPNMVVDM--CKGVQYLNEIKDSVVAGFQWASKEGALAEE 672
WD + L K + + P ++ +M C V YL+E+ D+ V F+ ++GA++
Sbjct: 301 SKWDLRRLCKTVGATALPRLNPPVLEEMGHCDSV-YLSEVGDTQVVVFKHEKEDGAISTI 359
Query: 673 NMRG 676
+RG
Sbjct: 360 VLRG 363
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 18/105 (17%)
Query: 88 NEYL--INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET----VLRQALG- 140
E+L ++ +DSPGH + + + + DGA++V+ E C Q +T + + LG
Sbjct: 77 TEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANE-PCPQPQTKEHLMALEILGI 135
Query: 141 ERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVI-----ENANVI 180
++I ++ NK+D L + EE Y+ ++ + ENA +I
Sbjct: 136 DKI--IIVQNKID---LVDEKQAEENYEQIKEFVKGTIAENAPII 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,262,948
Number of Sequences: 62578
Number of extensions: 1021705
Number of successful extensions: 2503
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2320
Number of HSP's gapped (non-prelim): 128
length of query: 824
length of database: 14,973,337
effective HSP length: 107
effective length of query: 717
effective length of database: 8,277,491
effective search space: 5934961047
effective search space used: 5934961047
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)