Query 003378
Match_columns 824
No_of_seqs 292 out of 2577
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 22:22:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003378.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003378hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0469 Elongation factor 2 [T 100.0 9E-174 2E-178 1365.3 47.4 811 8-824 19-842 (842)
2 PLN00116 translation elongatio 100.0 3E-150 7E-155 1357.8 83.0 816 5-824 16-843 (843)
3 PTZ00416 elongation factor 2; 100.0 7E-149 2E-153 1343.0 79.1 807 6-824 17-836 (836)
4 KOG0468 U5 snRNP-specific prot 100.0 2E-135 5E-140 1103.9 54.0 802 3-823 123-954 (971)
5 KOG0467 Translation elongation 100.0 5E-126 1E-130 1050.8 45.8 789 5-824 6-884 (887)
6 PRK07560 elongation factor EF- 100.0 1E-122 2E-127 1107.7 67.6 697 6-822 18-731 (731)
7 COG0480 FusA Translation elong 100.0 1E-122 3E-127 1071.4 61.9 655 6-810 8-697 (697)
8 TIGR00490 aEF-2 translation el 100.0 3E-117 7E-122 1057.2 64.4 689 6-813 17-720 (720)
9 KOG0465 Mitochondrial elongati 100.0 4E-119 8E-124 976.9 39.8 648 7-802 38-719 (721)
10 PRK12739 elongation factor G; 100.0 1E-109 3E-114 989.7 65.2 653 6-803 6-687 (691)
11 PRK00007 elongation factor G; 100.0 5E-109 1E-113 983.8 62.2 651 6-803 8-690 (693)
12 TIGR00484 EF-G translation elo 100.0 3E-106 7E-111 961.5 61.2 646 6-803 8-687 (689)
13 PRK13351 elongation factor G; 100.0 2E-103 5E-108 940.0 64.6 647 7-801 7-685 (687)
14 PRK12740 elongation factor G; 100.0 1.5E-98 3E-103 897.3 62.4 634 17-801 1-667 (668)
15 KOG0464 Elongation factor G [T 100.0 3.2E-92 6.9E-97 731.4 27.6 644 9-789 38-740 (753)
16 TIGR01394 TypA_BipA GTP-bindin 100.0 5.2E-73 1.1E-77 657.1 47.4 463 9-790 2-475 (594)
17 PRK10218 GTP-binding protein; 100.0 1.8E-71 4E-76 642.6 46.3 463 8-789 5-479 (607)
18 PRK05433 GTP-binding protein L 100.0 1.1E-69 2.4E-74 631.8 47.2 473 7-805 6-519 (600)
19 TIGR01393 lepA GTP-binding pro 100.0 1.4E-68 3.1E-73 622.0 49.2 473 8-805 3-516 (595)
20 PRK00741 prfC peptide chain re 100.0 7.5E-65 1.6E-69 582.1 40.5 436 6-562 8-473 (526)
21 COG1217 TypA Predicted membran 100.0 1.3E-64 2.8E-69 535.6 35.4 463 9-790 6-479 (603)
22 TIGR00503 prfC peptide chain r 100.0 8.2E-63 1.8E-67 565.4 39.3 430 6-556 9-468 (527)
23 KOG0462 Elongation factor-type 100.0 5E-62 1.1E-66 526.0 30.0 469 6-790 58-536 (650)
24 COG0481 LepA Membrane GTPase L 100.0 8E-57 1.7E-61 478.0 32.7 467 6-785 7-483 (603)
25 COG4108 PrfC Peptide chain rel 100.0 1.4E-51 3.1E-56 435.0 25.0 432 7-553 11-466 (528)
26 cd01885 EF2 EF2 (for archaea a 100.0 2.4E-39 5.2E-44 332.9 22.8 204 9-221 1-209 (222)
27 cd01886 EF-G Elongation factor 100.0 8.1E-37 1.7E-41 324.1 22.1 255 10-335 1-270 (270)
28 cd01683 EF2_IV_snRNP EF-2_doma 100.0 9.9E-37 2.2E-41 301.2 16.7 170 551-720 1-174 (178)
29 CHL00071 tufA elongation facto 100.0 5.3E-33 1.2E-37 313.1 28.3 293 6-462 10-306 (409)
30 cd04168 TetM_like Tet(M)-like 100.0 4.3E-33 9.2E-38 290.7 23.3 222 10-335 1-237 (237)
31 COG5256 TEF1 Translation elong 100.0 1.5E-32 3.2E-37 292.4 26.7 287 6-464 5-317 (428)
32 PRK12736 elongation factor Tu; 100.0 3.8E-32 8.3E-37 304.7 28.3 284 6-463 10-297 (394)
33 cd04169 RF3 RF3 subfamily. Pe 100.0 1.7E-32 3.8E-37 290.8 22.4 249 8-335 2-267 (267)
34 PLN00043 elongation factor 1-a 100.0 6E-32 1.3E-36 305.8 27.9 288 5-462 4-317 (447)
35 PTZ00141 elongation factor 1- 100.0 1.5E-31 3.3E-36 302.9 28.0 288 5-462 4-317 (446)
36 PRK12735 elongation factor Tu; 100.0 4.5E-31 9.7E-36 296.3 28.4 285 6-462 10-298 (396)
37 cd01681 aeEF2_snRNP_like_IV Th 100.0 4.4E-32 9.6E-37 270.3 17.0 171 551-721 1-175 (177)
38 PLN03126 Elongation factor Tu; 100.0 8.1E-31 1.7E-35 297.6 28.9 294 5-462 78-375 (478)
39 TIGR00485 EF-Tu translation el 100.0 9.4E-31 2E-35 293.9 28.5 284 5-462 9-296 (394)
40 KOG0460 Mitochondrial translat 100.0 5.7E-32 1.2E-36 277.6 15.6 282 7-463 53-341 (449)
41 PRK00049 elongation factor Tu; 100.0 1.7E-30 3.8E-35 291.3 27.9 285 6-462 10-298 (396)
42 cd04170 EF-G_bact Elongation f 100.0 7.2E-31 1.6E-35 280.4 21.9 251 10-335 1-268 (268)
43 PLN03127 Elongation factor Tu; 100.0 1.1E-29 2.5E-34 287.0 30.2 288 5-462 58-349 (447)
44 PRK05306 infB translation init 100.0 1.5E-29 3.2E-34 299.6 32.3 314 6-529 288-628 (787)
45 COG0050 TufB GTPases - transla 100.0 1.3E-30 2.8E-35 263.1 18.2 282 6-461 10-295 (394)
46 TIGR02034 CysN sulfate adenyly 100.0 2.6E-29 5.7E-34 282.7 26.6 128 9-155 1-146 (406)
47 PRK12317 elongation factor 1-a 100.0 3.4E-29 7.5E-34 284.6 26.6 285 6-462 4-309 (425)
48 PRK05124 cysN sulfate adenylyl 100.0 9.6E-29 2.1E-33 282.1 28.1 135 5-162 24-176 (474)
49 cd04167 Snu114p Snu114p subfam 100.0 6.5E-29 1.4E-33 256.2 22.1 196 10-221 2-200 (213)
50 TIGR00483 EF-1_alpha translati 100.0 3.4E-28 7.4E-33 276.3 27.4 286 5-462 4-311 (426)
51 TIGR00487 IF-2 translation ini 100.0 3.4E-27 7.3E-32 274.0 33.2 306 6-514 85-419 (587)
52 PTZ00327 eukaryotic translatio 100.0 3.2E-27 7E-32 266.3 28.4 134 6-155 32-184 (460)
53 CHL00189 infB translation init 100.0 3E-26 6.6E-31 269.0 30.3 318 6-529 242-583 (742)
54 PRK05506 bifunctional sulfate 99.9 1.9E-26 4.1E-31 273.8 27.7 132 5-155 21-170 (632)
55 KOG0458 Elongation factor 1 al 99.9 2.1E-26 4.6E-31 253.3 24.2 286 7-461 176-488 (603)
56 PF00009 GTP_EFTU: Elongation 99.9 1.3E-26 2.8E-31 234.4 14.7 168 7-212 2-175 (188)
57 PRK10512 selenocysteinyl-tRNA- 99.9 2.4E-25 5.1E-30 260.6 26.5 115 10-155 2-117 (614)
58 PRK04000 translation initiatio 99.9 7.4E-25 1.6E-29 246.6 27.8 134 6-155 7-152 (411)
59 cd01884 EF_Tu EF-Tu subfamily. 99.9 5.5E-26 1.2E-30 230.1 16.4 168 8-211 2-170 (195)
60 TIGR03680 eif2g_arch translati 99.9 3E-24 6.5E-29 241.9 29.0 133 7-155 3-147 (406)
61 COG5257 GCD11 Translation init 99.9 6.9E-24 1.5E-28 217.2 26.5 334 6-528 8-363 (415)
62 COG2895 CysN GTPases - Sulfate 99.9 2.8E-24 6.1E-29 222.9 17.9 151 6-183 4-172 (431)
63 TIGR00475 selB selenocysteine- 99.9 2E-23 4.3E-28 243.9 26.2 115 9-155 1-116 (581)
64 cd01883 EF1_alpha Eukaryotic e 99.9 1.2E-23 2.6E-28 217.8 15.8 170 10-212 1-193 (219)
65 KOG1145 Mitochondrial translat 99.9 6.1E-23 1.3E-27 223.1 21.3 129 4-170 149-277 (683)
66 cd04166 CysN_ATPS CysN_ATPS su 99.9 2.6E-23 5.7E-28 213.6 15.9 127 10-155 1-143 (208)
67 COG3276 SelB Selenocysteine-sp 99.9 3.4E-22 7.4E-27 215.0 21.3 114 10-155 2-116 (447)
68 COG5258 GTPBP1 GTPase [General 99.9 3.7E-22 7.9E-27 208.5 20.2 296 5-457 114-430 (527)
69 COG0532 InfB Translation initi 99.9 2.8E-21 6.2E-26 213.4 27.4 131 6-172 3-133 (509)
70 PRK04004 translation initiatio 99.9 2.9E-20 6.2E-25 216.9 28.0 131 6-155 4-136 (586)
71 KOG0459 Polypeptide release fa 99.8 2.8E-21 6E-26 203.5 11.6 290 5-464 76-391 (501)
72 cd01891 TypA_BipA TypA (tyrosi 99.8 7.5E-20 1.6E-24 185.9 18.0 142 9-173 3-144 (194)
73 KOG0461 Selenocysteine-specifi 99.8 1.3E-19 2.7E-24 186.9 17.9 130 7-155 6-135 (522)
74 TIGR00491 aIF-2 translation in 99.8 4.1E-18 8.9E-23 197.9 29.3 130 7-155 3-134 (590)
75 cd01890 LepA LepA subfamily. 99.8 6.9E-19 1.5E-23 176.0 18.1 131 10-155 2-132 (179)
76 PF03764 EFG_IV: Elongation fa 99.8 8.2E-20 1.8E-24 170.6 9.6 99 614-714 22-120 (120)
77 cd01888 eIF2_gamma eIF2-gamma 99.8 1.2E-19 2.7E-24 185.6 11.8 131 9-155 1-150 (203)
78 PF14492 EFG_II: Elongation Fa 99.8 1.2E-19 2.5E-24 153.7 7.7 73 477-551 2-75 (75)
79 cd04165 GTPBP1_like GTPBP1-lik 99.8 6.1E-19 1.3E-23 182.5 13.3 140 10-155 1-151 (224)
80 cd01889 SelB_euk SelB subfamil 99.8 4.2E-18 9.2E-23 172.8 17.3 133 9-155 1-133 (192)
81 cd00881 GTP_translation_factor 99.7 5E-17 1.1E-21 163.5 17.0 127 10-155 1-127 (189)
82 cd04098 eEF2_C_snRNP eEF2_C_sn 99.7 5.7E-18 1.2E-22 145.6 5.5 67 721-787 14-80 (80)
83 cd04090 eEF2_II_snRNP Loc2 eEF 99.7 7.3E-17 1.6E-21 143.5 11.3 94 368-461 1-94 (94)
84 PRK14845 translation initiatio 99.7 5.4E-15 1.2E-19 179.5 28.1 116 24-155 474-591 (1049)
85 KOG0463 GTP-binding protein GP 99.7 6.7E-17 1.5E-21 168.3 9.8 310 5-463 130-456 (641)
86 cd01684 Tet_like_IV EF-G_domai 99.7 2E-16 4.3E-21 146.0 11.5 112 554-714 1-115 (115)
87 cd03690 Tet_II Tet_II: This su 99.7 3.1E-16 6.7E-21 136.7 10.0 83 365-460 1-84 (85)
88 cd04171 SelB SelB subfamily. 99.7 1.1E-15 2.4E-20 150.0 14.5 115 10-155 2-117 (164)
89 cd01680 EFG_like_IV Elongation 99.6 2.2E-15 4.7E-20 139.9 11.8 112 556-714 1-116 (116)
90 smart00838 EFG_C Elongation fa 99.6 3E-16 6.6E-21 136.9 4.5 68 721-790 16-83 (85)
91 cd04092 mtEFG2_II_like mtEFG2_ 99.6 2.5E-15 5.4E-20 130.6 9.7 82 368-461 1-83 (83)
92 PF00679 EFG_C: Elongation fac 99.6 4.2E-16 9.2E-21 137.2 4.1 74 716-790 1-85 (89)
93 COG1160 Predicted GTPases [Gen 99.6 4.5E-15 9.8E-20 162.0 12.5 115 7-155 177-302 (444)
94 cd04096 eEF2_snRNP_like_C eEF2 99.6 1.5E-15 3.3E-20 131.0 5.8 67 721-787 14-80 (80)
95 cd04097 mtEFG1_C mtEFG1_C: C-t 99.6 1.8E-15 3.9E-20 129.7 5.1 65 721-787 14-78 (78)
96 cd03700 eEF2_snRNP_like_II EF2 99.6 1.5E-14 3.2E-19 128.6 11.1 91 368-461 1-92 (93)
97 cd03689 RF3_II RF3_II: this su 99.6 9.2E-15 2E-19 127.2 9.3 80 370-461 1-84 (85)
98 PRK00093 GTP-binding protein D 99.6 2.9E-14 6.4E-19 163.2 16.1 115 7-155 172-297 (435)
99 KOG0466 Translation initiation 99.6 1E-14 2.3E-19 148.6 10.5 146 7-174 37-205 (466)
100 cd04088 EFG_mtEFG_II EFG_mtEFG 99.6 1.3E-14 2.8E-19 126.2 9.6 81 368-460 1-82 (83)
101 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 4.1E-14 8.9E-19 139.6 14.5 113 11-155 3-115 (168)
102 cd04091 mtEFG1_II_like mtEFG1_ 99.6 1.7E-14 3.7E-19 124.7 9.8 80 368-461 1-81 (81)
103 cd03711 Tet_C Tet_C: C-terminu 99.5 3.4E-15 7.3E-20 128.1 4.3 65 721-787 14-78 (78)
104 cd01434 EFG_mtEFG1_IV EFG_mtEF 99.5 3.6E-14 7.8E-19 131.6 11.6 76 636-714 40-116 (116)
105 TIGR03594 GTPase_EngA ribosome 99.5 2.2E-14 4.8E-19 164.0 12.3 116 6-155 170-296 (429)
106 cd03713 EFG_mtEFG_C EFG_mtEFG_ 99.5 5.5E-15 1.2E-19 126.8 4.7 65 721-787 14-78 (78)
107 cd01895 EngA2 EngA2 subfamily. 99.5 3.9E-13 8.4E-18 132.8 15.3 114 8-155 2-126 (174)
108 cd03710 BipA_TypA_C BipA_TypA_ 99.5 2.3E-14 5E-19 123.1 5.1 65 721-786 14-78 (79)
109 cd03691 BipA_TypA_II BipA_TypA 99.5 1.4E-13 2.9E-18 120.6 10.0 84 368-460 1-85 (86)
110 cd01514 Elongation_Factor_C El 99.5 2.3E-14 5E-19 123.3 5.0 66 721-787 14-79 (79)
111 COG1159 Era GTPase [General fu 99.5 4.3E-13 9.2E-18 139.3 14.5 116 6-155 4-127 (298)
112 cd01693 mtEFG2_like_IV mtEF-G2 99.5 2.1E-13 4.6E-18 127.3 10.7 116 554-714 1-120 (120)
113 PRK03003 GTP-binding protein D 99.5 2.1E-12 4.5E-17 148.9 21.2 115 7-155 210-335 (472)
114 cd01894 EngA1 EngA1 subfamily. 99.5 2.5E-13 5.4E-18 132.1 11.5 108 17-155 3-118 (157)
115 cd04160 Arfrp1 Arfrp1 subfamil 99.5 3.7E-13 7.9E-18 132.8 12.0 115 10-155 1-120 (167)
116 COG2229 Predicted GTPase [Gene 99.5 7.3E-13 1.6E-17 127.6 13.4 132 6-165 8-141 (187)
117 COG1160 Predicted GTPases [Gen 99.4 4E-13 8.7E-18 146.9 11.6 113 9-155 4-125 (444)
118 cd03709 lepA_C lepA_C: This fa 99.4 7.1E-14 1.5E-18 120.3 4.4 65 721-786 14-79 (80)
119 cd03699 lepA_II lepA_II: This 99.4 4.4E-13 9.5E-18 117.3 9.2 81 368-461 1-86 (86)
120 PRK15494 era GTPase Era; Provi 99.4 1.3E-12 2.8E-17 143.9 14.8 116 6-155 50-173 (339)
121 TIGR00436 era GTP-binding prot 99.4 1.8E-12 3.9E-17 138.7 14.4 111 10-155 2-120 (270)
122 KOG1144 Translation initiation 99.4 2.2E-13 4.8E-18 152.8 7.3 131 7-156 474-606 (1064)
123 PRK09554 feoB ferrous iron tra 99.4 7.3E-12 1.6E-16 150.4 20.8 111 8-155 3-125 (772)
124 KOG1143 Predicted translation 99.4 8.8E-13 1.9E-17 137.9 10.5 160 6-182 165-333 (591)
125 TIGR03598 GTPase_YsxC ribosome 99.4 3.3E-12 7.2E-17 128.0 14.4 114 6-155 16-142 (179)
126 TIGR03594 GTPase_EngA ribosome 99.4 1.5E-12 3.2E-17 149.0 12.7 112 10-155 1-120 (429)
127 cd01879 FeoB Ferrous iron tran 99.4 1.8E-12 3.9E-17 126.4 10.6 105 17-155 2-114 (158)
128 cd01864 Rab19 Rab19 subfamily. 99.4 2.7E-12 5.9E-17 126.5 11.4 116 7-155 2-121 (165)
129 PRK09518 bifunctional cytidyla 99.4 3.6E-12 7.8E-17 153.8 13.9 115 7-155 449-574 (712)
130 PRK03003 GTP-binding protein D 99.4 4.8E-12 1E-16 145.9 13.6 114 8-155 38-159 (472)
131 TIGR00231 small_GTP small GTP- 99.4 2E-12 4.4E-17 124.8 8.9 114 8-155 1-121 (161)
132 PF02421 FeoB_N: Ferrous iron 99.3 1.8E-12 3.9E-17 125.3 8.1 110 9-155 1-118 (156)
133 cd04124 RabL2 RabL2 subfamily. 99.3 9.8E-12 2.1E-16 122.3 13.3 114 9-155 1-117 (161)
134 cd04164 trmE TrmE (MnmE, ThdF, 99.3 5.5E-12 1.2E-16 122.5 11.4 111 9-155 2-120 (157)
135 PRK00093 GTP-binding protein D 99.3 5.5E-12 1.2E-16 144.5 13.3 113 9-155 2-122 (435)
136 PRK00089 era GTPase Era; Revie 99.3 2.1E-11 4.7E-16 132.1 15.9 115 7-155 4-126 (292)
137 cd04145 M_R_Ras_like M-Ras/R-R 99.3 1.1E-11 2.4E-16 121.7 12.3 113 8-155 2-120 (164)
138 cd04105 SR_beta Signal recogni 99.3 2.3E-11 5E-16 124.5 15.0 130 10-177 2-141 (203)
139 cd04154 Arl2 Arl2 subfamily. 99.3 1.6E-11 3.5E-16 122.2 12.4 112 6-155 12-128 (173)
140 cd04151 Arl1 Arl1 subfamily. 99.3 2E-11 4.4E-16 119.5 12.7 108 10-155 1-113 (158)
141 cd04113 Rab4 Rab4 subfamily. 99.3 1.4E-11 3E-16 120.8 11.6 114 9-155 1-118 (161)
142 cd00878 Arf_Arl Arf (ADP-ribos 99.3 1.5E-11 3.2E-16 120.2 11.7 108 10-155 1-113 (158)
143 cd01898 Obg Obg subfamily. Th 99.3 2.3E-11 5E-16 120.2 13.0 111 10-155 2-127 (170)
144 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.3 1.7E-11 3.8E-16 123.3 12.2 116 7-155 2-122 (183)
145 cd01866 Rab2 Rab2 subfamily. 99.3 1.7E-11 3.8E-16 121.3 11.8 115 8-155 4-122 (168)
146 cd04157 Arl6 Arl6 subfamily. 99.3 3.1E-11 6.7E-16 118.3 13.3 110 10-155 1-117 (162)
147 PRK15467 ethanolamine utilizat 99.3 2.3E-11 5.1E-16 119.3 12.2 98 10-155 3-104 (158)
148 cd04114 Rab30 Rab30 subfamily. 99.3 2.8E-11 6E-16 119.6 12.8 114 7-155 6-125 (169)
149 cd04115 Rab33B_Rab33A Rab33B/R 99.3 1.8E-11 3.8E-16 121.5 11.4 116 7-155 1-122 (170)
150 TIGR00450 mnmE_trmE_thdF tRNA 99.3 1.9E-11 4E-16 138.9 13.0 114 7-155 202-323 (442)
151 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.3 3.5E-11 7.5E-16 120.0 13.5 111 7-155 14-129 (174)
152 cd04106 Rab23_lke Rab23-like s 99.3 2E-11 4.2E-16 119.7 11.1 116 9-155 1-119 (162)
153 PRK09518 bifunctional cytidyla 99.3 2.3E-11 5E-16 146.9 13.8 113 9-155 276-396 (712)
154 smart00178 SAR Sar1p-like memb 99.3 3E-11 6.6E-16 121.6 12.5 112 6-155 15-131 (184)
155 cd01893 Miro1 Miro1 subfamily. 99.3 7.6E-11 1.6E-15 116.5 14.6 112 9-155 1-116 (166)
156 smart00175 RAB Rab subfamily o 99.3 3E-11 6.6E-16 118.5 11.6 114 9-155 1-118 (164)
157 cd00879 Sar1 Sar1 subfamily. 99.3 3.1E-11 6.8E-16 122.0 11.9 112 6-155 17-133 (190)
158 cd04161 Arl2l1_Arl13_like Arl2 99.3 5.4E-11 1.2E-15 117.8 13.2 107 11-155 2-113 (167)
159 cd04163 Era Era subfamily. Er 99.3 1.1E-10 2.3E-15 114.2 15.1 114 8-155 3-124 (168)
160 PF01926 MMR_HSR1: 50S ribosom 99.3 5.3E-11 1.2E-15 110.3 12.0 107 10-151 1-116 (116)
161 cd01862 Rab7 Rab7 subfamily. 99.2 3.6E-11 7.8E-16 119.0 11.5 112 9-155 1-122 (172)
162 PRK05291 trmE tRNA modificatio 99.2 3.3E-11 7.2E-16 137.6 11.7 112 8-155 215-334 (449)
163 smart00173 RAS Ras subfamily o 99.2 5.9E-11 1.3E-15 116.6 11.9 111 10-155 2-118 (164)
164 cd01882 BMS1 Bms1. Bms1 is an 99.2 1.1E-10 2.4E-15 121.3 14.2 108 7-155 38-146 (225)
165 cd04162 Arl9_Arfrp2_like Arl9/ 99.2 7.1E-11 1.5E-15 116.6 12.0 108 11-155 2-112 (164)
166 cd01860 Rab5_related Rab5-rela 99.2 6E-11 1.3E-15 116.4 11.2 115 8-155 1-119 (163)
167 cd00877 Ran Ran (Ras-related n 99.2 5.3E-11 1.2E-15 117.7 10.9 114 9-155 1-117 (166)
168 cd01861 Rab6 Rab6 subfamily. 99.2 6.2E-11 1.4E-15 116.0 11.1 113 10-155 2-118 (161)
169 cd01863 Rab18 Rab18 subfamily. 99.2 5E-11 1.1E-15 116.8 10.4 114 9-155 1-119 (161)
170 cd00880 Era_like Era (E. coli 99.2 9.4E-11 2E-15 113.2 11.9 109 17-155 2-117 (163)
171 cd01867 Rab8_Rab10_Rab13_like 99.2 7.9E-11 1.7E-15 116.4 11.5 116 7-155 2-121 (167)
172 cd04122 Rab14 Rab14 subfamily. 99.2 1.3E-10 2.7E-15 114.8 12.7 112 9-155 3-120 (166)
173 cd04159 Arl10_like Arl10-like 99.2 1E-10 2.2E-15 113.5 11.9 108 11-155 2-114 (159)
174 cd04123 Rab21 Rab21 subfamily. 99.2 1.8E-10 4E-15 112.5 13.7 114 9-155 1-118 (162)
175 cd04149 Arf6 Arf6 subfamily. 99.2 1.5E-10 3.3E-15 114.8 13.1 112 6-155 7-123 (168)
176 cd04175 Rap1 Rap1 subgroup. T 99.2 1.5E-10 3.3E-15 113.9 13.0 112 9-155 2-119 (164)
177 PTZ00369 Ras-like protein; Pro 99.2 8.1E-11 1.8E-15 119.0 11.1 113 8-155 5-123 (189)
178 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.2 1.4E-10 3E-15 114.4 12.4 115 8-155 2-120 (166)
179 cd04138 H_N_K_Ras_like H-Ras/N 99.2 1.3E-10 2.8E-15 113.6 11.9 112 9-155 2-119 (162)
180 cd04119 RJL RJL (RabJ-Like) su 99.2 1.2E-10 2.5E-15 114.6 11.4 114 9-155 1-123 (168)
181 PRK04213 GTP-binding protein; 99.2 1.8E-10 3.9E-15 117.6 13.2 110 7-155 8-143 (201)
182 cd04116 Rab9 Rab9 subfamily. 99.2 2.5E-10 5.5E-15 113.0 13.9 117 6-155 3-127 (170)
183 cd04150 Arf1_5_like Arf1-Arf5- 99.2 2.4E-10 5.3E-15 112.2 13.5 109 9-155 1-114 (159)
184 cd00154 Rab Rab family. Rab G 99.2 1.2E-10 2.5E-15 112.9 11.1 114 9-155 1-118 (159)
185 PLN00223 ADP-ribosylation fact 99.2 2.6E-10 5.6E-15 114.6 14.0 112 6-155 15-131 (181)
186 smart00176 RAN Ran (Ras-relate 99.2 1.2E-10 2.6E-15 118.7 11.7 109 17-155 1-112 (200)
187 cd04147 Ras_dva Ras-dva subfam 99.2 7.1E-11 1.5E-15 120.4 9.9 111 10-155 1-117 (198)
188 cd04107 Rab32_Rab38 Rab38/Rab3 99.2 3.1E-10 6.7E-15 116.0 14.5 113 9-155 1-123 (201)
189 PLN03118 Rab family protein; P 99.2 1.6E-10 3.6E-15 119.0 12.6 116 6-155 12-133 (211)
190 cd04140 ARHI_like ARHI subfami 99.2 1.2E-10 2.6E-15 114.9 11.1 112 9-155 2-121 (165)
191 PRK00454 engB GTP-binding prot 99.2 3.8E-10 8.2E-15 114.5 15.1 115 5-155 21-148 (196)
192 smart00177 ARF ARF-like small 99.2 2.4E-10 5.2E-15 114.1 13.3 112 6-155 11-127 (175)
193 cd04139 RalA_RalB RalA/RalB su 99.2 3.1E-10 6.8E-15 111.2 13.7 113 9-155 1-118 (164)
194 cd01897 NOG NOG1 is a nucleola 99.2 1.7E-10 3.6E-15 114.0 11.7 111 10-155 2-126 (168)
195 cd04120 Rab12 Rab12 subfamily. 99.2 1.9E-10 4.2E-15 117.4 12.5 111 10-155 2-118 (202)
196 COG0486 ThdF Predicted GTPase 99.2 1.5E-10 3.3E-15 127.2 12.2 114 7-155 216-337 (454)
197 cd04155 Arl3 Arl3 subfamily. 99.2 1.9E-10 4.1E-15 114.2 11.7 112 6-155 12-128 (173)
198 cd04146 RERG_RasL11_like RERG/ 99.2 1.1E-10 2.3E-15 115.1 9.9 112 10-155 1-119 (165)
199 KOG0084 GTPase Rab1/YPT1, smal 99.2 2.2E-10 4.7E-15 111.6 11.5 120 3-155 4-127 (205)
200 cd01878 HflX HflX subfamily. 99.2 1.7E-10 3.6E-15 118.2 11.4 114 8-155 41-166 (204)
201 cd04158 ARD1 ARD1 subfamily. 99.2 2.9E-10 6.4E-15 112.7 12.6 108 10-155 1-113 (169)
202 cd04177 RSR1 RSR1 subgroup. R 99.1 2.6E-10 5.7E-15 112.8 11.9 112 9-155 2-119 (168)
203 cd04156 ARLTS1 ARLTS1 subfamil 99.1 2.1E-10 4.5E-15 112.3 11.0 109 10-155 1-114 (160)
204 cd04112 Rab26 Rab26 subfamily. 99.1 2E-10 4.3E-15 116.4 11.2 113 9-155 1-119 (191)
205 cd01868 Rab11_like Rab11-like. 99.1 2.4E-10 5.3E-15 112.5 11.5 115 8-155 3-121 (165)
206 cd01865 Rab3 Rab3 subfamily. 99.1 2.3E-10 4.9E-15 112.9 11.1 114 9-155 2-119 (165)
207 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.1 3.2E-10 6.9E-15 112.9 12.2 113 8-155 2-120 (172)
208 TIGR02528 EutP ethanolamine ut 99.1 1.5E-10 3.3E-15 111.0 9.5 96 10-155 2-101 (142)
209 cd04110 Rab35 Rab35 subfamily. 99.1 3.1E-10 6.8E-15 115.8 12.3 116 7-155 5-123 (199)
210 cd04101 RabL4 RabL4 (Rab-like4 99.1 2.5E-10 5.5E-15 112.2 11.3 117 9-155 1-120 (164)
211 cd04137 RheB Rheb (Ras Homolog 99.1 3E-10 6.4E-15 113.7 11.7 113 9-155 2-119 (180)
212 PLN03071 GTP-binding nuclear p 99.1 2.9E-10 6.3E-15 117.8 12.0 117 6-155 11-130 (219)
213 PTZ00133 ADP-ribosylation fact 99.1 4.5E-10 9.7E-15 113.0 12.8 112 6-155 15-131 (182)
214 cd04136 Rap_like Rap-like subf 99.1 3.4E-10 7.3E-15 111.0 11.6 112 9-155 2-119 (163)
215 COG0218 Predicted GTPase [Gene 99.1 8E-10 1.7E-14 109.3 13.9 113 6-155 22-148 (200)
216 TIGR03156 GTP_HflX GTP-binding 99.1 2.8E-10 6.1E-15 125.7 11.8 113 8-155 189-314 (351)
217 cd04144 Ras2 Ras2 subfamily. 99.1 4.8E-10 1E-14 113.5 12.4 111 10-155 1-119 (190)
218 PRK12298 obgE GTPase CgtA; Rev 99.1 7.4E-10 1.6E-14 123.8 14.7 112 10-155 161-288 (390)
219 cd04176 Rap2 Rap2 subgroup. T 99.1 4.6E-10 1E-14 110.2 11.5 112 9-155 2-119 (163)
220 cd04127 Rab27A Rab27a subfamil 99.1 4.9E-10 1.1E-14 112.1 11.5 126 7-155 3-133 (180)
221 cd04126 Rab20 Rab20 subfamily. 99.1 5.3E-10 1.2E-14 115.5 12.0 109 9-155 1-113 (220)
222 cd04142 RRP22 RRP22 subfamily. 99.1 4E-10 8.6E-15 114.9 10.8 114 9-155 1-129 (198)
223 PF09439 SRPRB: Signal recogni 99.1 5.3E-10 1.2E-14 110.6 11.0 128 10-178 5-145 (181)
224 cd04132 Rho4_like Rho4-like su 99.1 7.8E-10 1.7E-14 111.4 12.5 113 9-155 1-118 (187)
225 PLN03110 Rab GTPase; Provision 99.1 6.8E-10 1.5E-14 114.8 12.2 117 6-155 10-130 (216)
226 cd00876 Ras Ras family. The R 99.1 5.3E-10 1.2E-14 108.9 10.8 112 10-155 1-117 (160)
227 cd00882 Ras_like_GTPase Ras-li 99.1 4E-10 8.6E-15 107.4 9.7 109 17-155 2-115 (157)
228 cd04108 Rab36_Rab34 Rab34/Rab3 99.1 7.8E-10 1.7E-14 109.9 12.1 113 10-155 2-119 (170)
229 cd01881 Obg_like The Obg-like 99.1 4.9E-10 1.1E-14 111.3 10.3 108 17-155 2-133 (176)
230 cd04118 Rab24 Rab24 subfamily. 99.1 7.9E-10 1.7E-14 112.0 11.8 115 9-155 1-118 (193)
231 cd01874 Cdc42 Cdc42 subfamily. 99.1 7.6E-10 1.7E-14 110.5 11.4 113 8-155 1-118 (175)
232 cd04135 Tc10 TC10 subfamily. 99.1 3.9E-10 8.5E-15 112.0 8.9 112 9-155 1-117 (174)
233 cd01852 AIG1 AIG1 (avrRpt2-ind 99.1 1.9E-09 4.1E-14 109.7 14.0 113 9-155 1-129 (196)
234 cd04109 Rab28 Rab28 subfamily. 99.1 7.1E-10 1.5E-14 114.6 11.0 113 9-155 1-122 (215)
235 cd04121 Rab40 Rab40 subfamily. 99.1 1E-09 2.2E-14 110.9 11.8 116 7-155 5-123 (189)
236 cd00157 Rho Rho (Ras homology) 99.1 5.2E-10 1.1E-14 110.6 9.3 113 9-155 1-117 (171)
237 PLN03108 Rab family protein; P 99.0 1.7E-09 3.7E-14 111.4 12.8 116 7-155 5-124 (210)
238 cd04128 Spg1 Spg1p. Spg1p (se 99.0 2E-09 4.3E-14 108.2 12.5 112 9-155 1-117 (182)
239 cd04111 Rab39 Rab39 subfamily. 99.0 1.4E-09 3E-14 112.1 11.4 116 8-155 2-122 (211)
240 PRK11058 GTPase HflX; Provisio 99.0 1.2E-09 2.7E-14 123.4 11.8 112 9-155 198-322 (426)
241 cd01875 RhoG RhoG subfamily. 99.0 2.3E-09 5E-14 108.7 12.3 114 8-155 3-120 (191)
242 cd04125 RabA_like RabA-like su 99.0 1.6E-09 3.5E-14 109.4 10.9 114 9-155 1-118 (188)
243 cd01850 CDC_Septin CDC/Septin. 99.0 4.4E-09 9.4E-14 112.6 14.7 124 8-155 4-156 (276)
244 cd01892 Miro2 Miro2 subfamily. 99.0 2.5E-09 5.4E-14 106.2 12.0 115 6-155 2-121 (169)
245 KOG0052 Translation elongation 99.0 8E-11 1.7E-15 126.4 1.3 128 6-155 5-155 (391)
246 TIGR02729 Obg_CgtA Obg family 99.0 3E-09 6.5E-14 116.5 13.7 113 9-155 158-286 (329)
247 PF08477 Miro: Miro-like prote 99.0 7.1E-10 1.5E-14 102.9 7.3 113 10-153 1-119 (119)
248 cd04133 Rop_like Rop subfamily 99.0 1.8E-09 3.9E-14 107.9 10.6 113 9-155 2-118 (176)
249 PF00025 Arf: ADP-ribosylation 99.0 2.1E-09 4.6E-14 107.3 11.1 112 6-155 12-128 (175)
250 cd01871 Rac1_like Rac1-like su 99.0 2E-09 4.4E-14 107.4 10.8 112 9-155 2-118 (174)
251 cd04130 Wrch_1 Wrch-1 subfamil 99.0 1.3E-09 2.7E-14 108.5 9.1 113 9-155 1-117 (173)
252 PTZ00132 GTP-binding nuclear p 99.0 3.7E-09 8E-14 109.2 12.9 117 6-155 7-126 (215)
253 cd04131 Rnd Rnd subfamily. Th 99.0 3.9E-09 8.5E-14 105.7 12.5 112 9-155 2-118 (178)
254 smart00174 RHO Rho (Ras homolo 99.0 3.5E-09 7.5E-14 105.2 12.1 68 88-155 44-115 (174)
255 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.0 2.6E-09 5.6E-14 110.6 11.4 112 9-155 2-118 (222)
256 cd04143 Rhes_like Rhes_like su 99.0 2.7E-09 5.9E-14 112.4 11.8 112 9-155 1-126 (247)
257 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.0 2.9E-09 6.2E-14 107.1 11.4 115 6-155 3-122 (182)
258 cd04102 RabL3 RabL3 (Rab-like3 99.0 3.1E-09 6.7E-14 108.4 11.6 117 9-155 1-142 (202)
259 TIGR00437 feoB ferrous iron tr 99.0 1.6E-09 3.6E-14 127.4 10.7 104 18-155 1-112 (591)
260 PRK12299 obgE GTPase CgtA; Rev 99.0 3.8E-09 8.2E-14 115.8 12.8 112 10-155 160-284 (335)
261 KOG0095 GTPase Rab30, small G 99.0 9.9E-09 2.1E-13 94.7 13.3 135 1-175 1-139 (213)
262 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.9 5.8E-09 1.3E-13 108.5 12.6 115 7-155 12-130 (232)
263 KOG0080 GTPase Rab18, small G 98.9 1.4E-09 2.9E-14 101.8 6.9 118 5-155 8-130 (209)
264 PF10662 PduV-EutP: Ethanolami 98.9 4.1E-09 8.9E-14 99.8 10.2 60 93-155 39-102 (143)
265 cd04117 Rab15 Rab15 subfamily. 98.9 7E-09 1.5E-13 102.0 12.3 112 9-155 1-118 (161)
266 cd04134 Rho3 Rho3 subfamily. 98.9 4.3E-09 9.2E-14 106.5 10.4 112 10-155 2-117 (189)
267 COG1084 Predicted GTPase [Gene 98.9 1.4E-08 3E-13 106.8 14.3 116 4-155 164-293 (346)
268 KOG0092 GTPase Rab5/YPT51 and 98.9 2.6E-09 5.7E-14 103.7 8.2 116 7-155 4-123 (200)
269 KOG1423 Ras-like GTPase ERA [C 98.9 4.2E-09 9.1E-14 108.9 10.1 117 5-155 69-198 (379)
270 cd01876 YihA_EngB The YihA (En 98.9 1.3E-08 2.9E-13 99.6 13.3 109 11-155 2-123 (170)
271 PRK12296 obgE GTPase CgtA; Rev 98.9 1.4E-08 3E-13 115.7 14.7 112 9-155 160-297 (500)
272 cd01870 RhoA_like RhoA-like su 98.9 4.3E-09 9.2E-14 104.7 9.4 112 9-155 2-118 (175)
273 cd04104 p47_IIGP_like p47 (47- 98.9 6.3E-09 1.4E-13 106.0 10.5 115 8-155 1-120 (197)
274 PLN00023 GTP-binding protein; 98.9 6.7E-09 1.5E-13 111.4 11.0 127 7-155 20-164 (334)
275 cd04148 RGK RGK subfamily. Th 98.9 7.9E-09 1.7E-13 107.3 11.1 111 9-155 1-119 (221)
276 PRK12297 obgE GTPase CgtA; Rev 98.9 2.3E-08 4.9E-13 112.5 14.8 112 10-155 160-287 (424)
277 KOG0094 GTPase Rab6/YPT6/Ryh1, 98.8 2.3E-08 5.1E-13 97.1 11.4 116 7-155 21-141 (221)
278 KOG0078 GTP-binding protein SE 98.8 2.1E-08 4.6E-13 99.3 10.6 117 6-155 10-130 (207)
279 KOG0394 Ras-related GTPase [Ge 98.8 1.5E-08 3.2E-13 97.5 9.1 122 1-155 1-131 (210)
280 PRK09866 hypothetical protein; 98.8 6.1E-08 1.3E-12 110.8 15.0 67 89-155 229-302 (741)
281 COG3596 Predicted GTPase [Gene 98.8 7.2E-08 1.6E-12 99.3 13.7 160 5-212 36-210 (296)
282 KOG0098 GTPase Rab2, small G p 98.8 3.8E-08 8.2E-13 94.9 10.2 115 8-155 6-124 (216)
283 PF00071 Ras: Ras family; Int 98.8 1.2E-07 2.6E-12 92.9 14.1 113 10-155 1-117 (162)
284 COG1100 GTPase SAR1 and relate 98.8 5.5E-08 1.2E-12 100.5 12.1 115 8-155 5-124 (219)
285 KOG1191 Mitochondrial GTPase [ 98.8 3.5E-08 7.6E-13 108.5 10.7 116 6-155 266-402 (531)
286 KOG0086 GTPase Rab4, small G p 98.7 3.4E-08 7.5E-13 91.5 8.6 116 7-155 8-127 (214)
287 KOG0073 GTP-binding ADP-ribosy 98.7 1.1E-07 2.4E-12 89.8 11.6 113 5-155 13-130 (185)
288 KOG0070 GTP-binding ADP-ribosy 98.7 3.8E-08 8.3E-13 95.5 7.9 114 4-155 13-131 (181)
289 cd01853 Toc34_like Toc34-like 98.7 4.1E-07 9E-12 95.7 15.6 116 6-155 29-162 (249)
290 cd01873 RhoBTB RhoBTB subfamil 98.7 1E-07 2.2E-12 96.9 10.7 68 86-155 62-133 (195)
291 KOG0087 GTPase Rab11/YPT3, sma 98.7 8.3E-08 1.8E-12 94.7 9.0 117 6-155 12-132 (222)
292 cd04129 Rho2 Rho2 subfamily. 98.7 1E-07 2.3E-12 96.1 10.2 112 9-155 2-118 (187)
293 smart00053 DYNc Dynamin, GTPas 98.6 4.2E-07 9E-12 94.7 14.1 67 89-155 124-205 (240)
294 cd04103 Centaurin_gamma Centau 98.6 1.7E-07 3.6E-12 92.0 10.4 107 9-155 1-112 (158)
295 PF03144 GTP_EFTU_D2: Elongati 98.6 2.2E-08 4.9E-13 84.8 3.5 71 385-460 3-74 (74)
296 KOG0075 GTP-binding ADP-ribosy 98.6 9E-08 1.9E-12 88.5 7.0 114 7-161 19-137 (186)
297 PF04670 Gtr1_RagA: Gtr1/RagA 98.6 4E-07 8.8E-12 94.2 12.7 134 10-182 1-145 (232)
298 COG0370 FeoB Fe2+ transport sy 98.6 1.4E-07 3.1E-12 108.4 9.9 109 9-155 4-121 (653)
299 cd01896 DRG The developmentall 98.6 7.3E-07 1.6E-11 93.2 13.8 98 10-143 2-106 (233)
300 KOG0090 Signal recognition par 98.6 2.8E-07 6E-12 91.2 9.5 127 10-178 40-178 (238)
301 COG1163 DRG Predicted GTPase [ 98.5 3.6E-07 7.8E-12 95.9 10.5 84 9-127 64-154 (365)
302 KOG0079 GTP-binding protein H- 98.5 5.3E-07 1.1E-11 83.5 9.9 114 9-155 9-125 (198)
303 TIGR02836 spore_IV_A stage IV 98.5 1.2E-06 2.5E-11 95.7 13.8 131 8-154 17-192 (492)
304 TIGR00991 3a0901s02IAP34 GTP-b 98.5 1.7E-06 3.7E-11 92.5 14.1 117 5-155 35-166 (313)
305 KOG0088 GTPase Rab21, small G 98.5 9.4E-08 2E-12 89.3 3.2 115 8-155 13-131 (218)
306 KOG4252 GTP-binding protein [S 98.4 3E-07 6.4E-12 87.8 5.4 117 6-155 18-137 (246)
307 KOG0395 Ras-related GTPase [Ge 98.4 1.2E-06 2.5E-11 88.9 9.5 115 7-155 2-121 (196)
308 KOG0093 GTPase Rab3, small G p 98.4 2.2E-06 4.9E-11 79.4 9.6 114 9-155 22-139 (193)
309 KOG0074 GTP-binding ADP-ribosy 98.4 1.3E-06 2.9E-11 80.3 8.0 112 5-155 14-132 (185)
310 KOG0071 GTP-binding ADP-ribosy 98.4 2E-06 4.4E-11 79.1 9.2 120 4-165 13-138 (180)
311 COG2262 HflX GTPases [General 98.4 1.8E-06 3.9E-11 93.9 10.4 113 9-155 193-317 (411)
312 PF00350 Dynamin_N: Dynamin fa 98.3 9.5E-07 2.1E-11 87.3 6.4 64 89-152 100-168 (168)
313 PRK13768 GTPase; Provisional 98.3 1.7E-06 3.7E-11 91.6 8.6 67 89-155 96-175 (253)
314 PRK09435 membrane ATPase/prote 98.3 3E-06 6.6E-11 92.4 10.3 62 85-155 144-207 (332)
315 cd01342 Translation_Factor_II_ 98.2 6E-06 1.3E-10 70.3 8.8 78 368-457 1-78 (83)
316 KOG1489 Predicted GTP-binding 98.2 1.1E-05 2.3E-10 84.7 11.8 108 10-155 198-325 (366)
317 PF04548 AIG1: AIG1 family; I 98.2 2.2E-05 4.7E-10 81.0 14.2 113 9-155 1-129 (212)
318 KOG1532 GTPase XAB1, interacts 98.2 1.8E-06 3.8E-11 88.4 5.8 88 89-176 115-215 (366)
319 COG5192 BMS1 GTP-binding prote 98.2 4E-06 8.7E-11 92.6 8.8 107 6-155 67-176 (1077)
320 PTZ00099 rab6; Provisional 98.2 4.2E-06 9E-11 83.6 8.1 69 87-155 26-98 (176)
321 PF05049 IIGP: Interferon-indu 98.1 8.4E-06 1.8E-10 89.6 9.5 134 6-172 33-177 (376)
322 PF03029 ATP_bind_1: Conserved 98.1 1.2E-06 2.6E-11 91.6 2.4 65 91-155 92-169 (238)
323 KOG0097 GTPase Rab14, small G 98.1 2.4E-05 5.3E-10 71.8 10.4 114 9-155 12-129 (215)
324 PF00735 Septin: Septin; Inte 98.1 4.4E-05 9.4E-10 81.9 13.9 124 8-155 4-155 (281)
325 KOG2486 Predicted GTPase [Gene 98.1 1.5E-05 3.2E-10 82.3 9.2 114 7-155 135-261 (320)
326 KOG0077 Vesicle coat complex C 98.0 2.6E-05 5.6E-10 74.2 8.2 70 89-162 63-137 (193)
327 PRK14722 flhF flagellar biosyn 98.0 2.2E-05 4.7E-10 86.9 8.9 67 89-155 215-294 (374)
328 cd03698 eRF3_II_like eRF3_II_l 98.0 5.9E-05 1.3E-09 65.4 9.6 79 367-460 1-82 (83)
329 cd03110 Fer4_NifH_child This p 97.9 0.00012 2.5E-09 73.3 12.8 66 88-155 91-156 (179)
330 KOG0076 GTP-binding ADP-ribosy 97.9 2.2E-05 4.8E-10 75.3 6.9 118 7-155 16-139 (197)
331 TIGR00993 3a0901s04IAP86 chlor 97.9 0.00021 4.6E-09 82.8 15.5 115 7-155 117-249 (763)
332 cd03693 EF1_alpha_II EF1_alpha 97.9 9.2E-05 2E-09 65.4 9.7 84 365-462 2-88 (91)
333 TIGR00073 hypB hydrogenase acc 97.9 6.1E-05 1.3E-09 77.3 9.9 137 8-155 22-161 (207)
334 PTZ00258 GTP-binding protein; 97.9 5.1E-05 1.1E-09 84.4 9.6 99 7-124 20-126 (390)
335 KOG1954 Endocytosis/signaling 97.9 0.00019 4.1E-09 76.5 13.1 79 89-173 146-236 (532)
336 COG4917 EutP Ethanolamine util 97.8 3.1E-05 6.8E-10 70.3 6.0 59 94-155 41-103 (148)
337 cd01900 YchF YchF subfamily. 97.8 6.1E-05 1.3E-09 80.2 8.2 96 11-125 1-104 (274)
338 cd03115 SRP The signal recogni 97.8 0.00014 3.1E-09 72.3 10.2 66 88-155 81-152 (173)
339 PRK09601 GTP-binding protein Y 97.8 0.00012 2.6E-09 80.6 10.1 98 9-125 3-108 (364)
340 cd03114 ArgK-like The function 97.7 6.6E-05 1.4E-09 72.7 7.0 59 88-153 90-148 (148)
341 COG0536 Obg Predicted GTPase [ 97.7 0.00031 6.7E-09 74.9 12.1 108 10-155 161-288 (369)
342 TIGR00750 lao LAO/AO transport 97.7 0.00011 2.3E-09 80.1 7.8 63 86-155 123-185 (300)
343 KOG3883 Ras family small GTPas 97.6 0.00045 9.8E-09 64.9 9.9 117 7-155 8-131 (198)
344 KOG0096 GTPase Ran/TC4/GSP1 (n 97.6 0.00014 3E-09 70.9 6.5 116 7-155 9-127 (216)
345 KOG0091 GTPase Rab39, small G 97.6 0.00034 7.4E-09 66.4 8.9 112 9-155 9-129 (213)
346 KOG0081 GTPase Rab27, small G 97.6 4.5E-05 9.9E-10 71.7 2.9 67 89-155 66-137 (219)
347 TIGR01425 SRP54_euk signal rec 97.6 0.00042 9.1E-09 78.0 11.1 65 88-155 181-252 (429)
348 KOG3886 GTP-binding protein [S 97.6 0.00016 3.6E-09 72.5 6.9 120 9-165 5-135 (295)
349 cd02036 MinD Bacterial cell di 97.5 0.00087 1.9E-08 66.6 12.2 63 91-155 64-127 (179)
350 PRK09602 translation-associate 97.5 0.00029 6.3E-09 79.2 9.5 37 89-125 71-114 (396)
351 cd01899 Ygr210 Ygr210 subfamil 97.5 0.00029 6.2E-09 76.9 8.8 37 89-125 68-111 (318)
352 cd04089 eRF3_II eRF3_II: domai 97.5 0.00078 1.7E-08 58.2 9.8 65 367-447 1-65 (82)
353 KOG0072 GTP-binding ADP-ribosy 97.5 0.00012 2.5E-09 68.1 4.7 111 7-155 17-132 (182)
354 cd01858 NGP_1 NGP-1. Autoanti 97.5 0.00012 2.6E-09 71.6 5.2 27 7-36 101-127 (157)
355 COG5019 CDC3 Septin family pro 97.5 0.0011 2.5E-08 71.5 12.7 124 8-155 23-175 (373)
356 KOG0083 GTPase Rab26/Rab37, sm 97.4 6.1E-05 1.3E-09 68.7 2.1 70 86-155 43-116 (192)
357 PF03193 DUF258: Protein of un 97.4 8.1E-05 1.8E-09 72.5 3.0 18 17-34 41-58 (161)
358 PF03308 ArgK: ArgK protein; 97.4 0.00014 3.1E-09 75.4 4.7 73 88-175 120-194 (266)
359 KOG1707 Predicted Ras related/ 97.4 0.0008 1.7E-08 76.2 10.9 118 3-155 4-128 (625)
360 TIGR00101 ureG urease accessor 97.4 0.00052 1.1E-08 70.0 8.6 58 89-155 91-150 (199)
361 KOG1490 GTP-binding protein CR 97.4 0.00026 5.6E-09 78.5 6.5 117 3-155 163-294 (620)
362 KOG2655 Septin family protein 97.4 0.00095 2.1E-08 72.6 10.6 123 8-155 21-171 (366)
363 cd02038 FleN-like FleN is a me 97.4 0.0016 3.4E-08 62.4 11.2 79 90-175 45-125 (139)
364 TIGR00064 ftsY signal recognit 97.4 0.00095 2.1E-08 71.4 10.3 65 88-155 153-230 (272)
365 cd03112 CobW_like The function 97.3 0.0011 2.3E-08 65.0 9.7 63 89-154 86-158 (158)
366 PRK14974 cell division protein 97.3 0.00084 1.8E-08 73.6 9.7 63 88-155 221-292 (336)
367 PRK10416 signal recognition pa 97.3 0.00076 1.7E-08 73.7 9.4 131 8-155 114-272 (318)
368 KOG0448 Mitofusin 1 GTPase, in 97.3 0.0018 3.9E-08 74.6 12.4 137 5-155 106-274 (749)
369 cd04178 Nucleostemin_like Nucl 97.3 0.00027 5.9E-09 70.2 5.2 25 7-34 116-140 (172)
370 PF00448 SRP54: SRP54-type pro 97.3 0.00069 1.5E-08 68.8 7.9 66 88-155 82-153 (196)
371 TIGR00959 ffh signal recogniti 97.3 0.00087 1.9E-08 75.9 9.1 64 87-155 180-252 (428)
372 cd03694 GTPBP_II Domain II of 97.3 0.0018 4E-08 56.6 9.2 74 374-457 7-82 (87)
373 PRK13849 putative crown gall t 97.3 0.001 2.3E-08 69.4 8.9 64 88-153 82-151 (231)
374 PRK11889 flhF flagellar biosyn 97.2 0.0013 2.8E-08 72.7 9.6 64 89-155 320-390 (436)
375 PRK00771 signal recognition pa 97.2 0.0012 2.7E-08 74.8 9.5 61 90-155 176-245 (437)
376 COG0523 Putative GTPases (G3E 97.2 0.002 4.2E-08 70.3 10.2 150 17-179 7-175 (323)
377 cd02037 MRP-like MRP (Multiple 97.2 0.0018 3.9E-08 64.1 9.2 66 88-155 66-134 (169)
378 PRK10867 signal recognition pa 97.1 0.0015 3.2E-08 74.1 9.3 64 87-155 181-253 (433)
379 cd01849 YlqF_related_GTPase Yl 97.1 0.00064 1.4E-08 66.3 5.6 26 7-35 99-124 (155)
380 cd03697 EFTU_II EFTU_II: Elong 97.1 0.0024 5.1E-08 55.9 8.5 78 372-461 5-85 (87)
381 cd03111 CpaE_like This protein 97.1 0.0034 7.4E-08 57.1 9.8 59 91-151 44-106 (106)
382 KOG0393 Ras-related small GTPa 97.1 0.00046 9.9E-09 69.1 4.1 116 7-155 3-122 (198)
383 cd01857 HSR1_MMR1 HSR1/MMR1. 97.1 0.0007 1.5E-08 64.9 5.2 21 10-33 85-105 (141)
384 PRK10463 hydrogenase nickel in 97.0 0.0013 2.8E-08 70.2 7.2 133 7-155 103-243 (290)
385 cd03696 selB_II selB_II: this 97.0 0.0042 9.2E-08 53.7 9.0 63 371-447 4-66 (83)
386 PRK12726 flagellar biosynthesi 97.0 0.0021 4.6E-08 70.8 8.6 64 88-155 284-355 (407)
387 cd01857 HSR1_MMR1 HSR1/MMR1. 97.0 0.0012 2.6E-08 63.3 6.1 51 105-155 3-55 (141)
388 PRK12727 flagellar biosynthesi 97.0 0.0046 1E-07 70.9 11.6 65 89-155 428-497 (559)
389 COG3640 CooC CO dehydrogenase 97.0 0.0017 3.6E-08 66.1 7.0 69 84-155 128-198 (255)
390 KOG1534 Putative transcription 97.0 0.0011 2.4E-08 65.9 5.4 67 89-155 97-177 (273)
391 KOG1547 Septin CDC10 and relat 97.0 0.0071 1.5E-07 61.3 11.1 123 8-155 46-197 (336)
392 KOG1673 Ras GTPases [General f 96.9 0.0041 9E-08 58.7 8.6 117 6-155 18-137 (205)
393 PRK12288 GTPase RsgA; Reviewed 96.9 0.00064 1.4E-08 75.1 3.9 22 11-35 208-229 (347)
394 cd01855 YqeH YqeH. YqeH is an 96.9 0.001 2.3E-08 67.1 5.1 24 9-35 128-151 (190)
395 TIGR03596 GTPase_YlqF ribosome 96.9 0.0017 3.7E-08 69.8 7.0 24 7-33 117-140 (276)
396 PRK09563 rbgA GTPase YlqF; Rev 96.9 0.0012 2.7E-08 71.3 5.9 26 6-34 119-144 (287)
397 cd01858 NGP_1 NGP-1. Autoanti 96.8 0.0028 6.1E-08 61.9 7.1 49 107-155 2-52 (157)
398 COG1162 Predicted GTPases [Gen 96.8 0.0012 2.6E-08 70.2 4.3 17 17-33 170-186 (301)
399 COG1703 ArgK Putative periplas 96.8 0.0095 2.1E-07 62.9 10.6 62 85-155 139-202 (323)
400 COG0378 HypB Ni2+-binding GTPa 96.7 0.0036 7.9E-08 62.1 7.0 130 9-155 14-155 (202)
401 cd01856 YlqF YlqF. Proteins o 96.7 0.0023 5.1E-08 63.5 5.6 25 7-34 114-138 (171)
402 cd03695 CysN_NodQ_II CysN_NodQ 96.7 0.01 2.2E-07 51.2 8.5 50 385-447 17-66 (81)
403 cd01851 GBP Guanylate-binding 96.7 0.0047 1E-07 64.2 7.6 90 6-124 5-102 (224)
404 PRK12724 flagellar biosynthesi 96.7 0.0053 1.1E-07 68.7 8.3 65 88-155 298-372 (432)
405 TIGR00157 ribosome small subun 96.6 0.002 4.3E-08 67.9 4.7 22 10-34 122-143 (245)
406 cd01859 MJ1464 MJ1464. This f 96.6 0.0036 7.8E-08 61.0 6.1 51 105-155 4-54 (156)
407 COG1161 Predicted GTPases [Gen 96.6 0.0024 5.2E-08 70.1 5.3 59 6-101 130-188 (322)
408 cd02042 ParA ParA and ParB of 96.6 0.011 2.3E-07 53.3 8.8 45 90-136 40-84 (104)
409 cd03688 eIF2_gamma_II eIF2_gam 96.6 0.011 2.3E-07 53.4 8.3 89 364-457 2-102 (113)
410 PRK12289 GTPase RsgA; Reviewed 96.6 0.0017 3.7E-08 71.8 3.8 22 11-35 175-196 (352)
411 cd00066 G-alpha G protein alph 96.6 0.0046 9.9E-08 67.8 7.1 67 89-155 160-241 (317)
412 PRK06731 flhF flagellar biosyn 96.5 0.013 2.7E-07 62.5 9.6 64 88-155 153-224 (270)
413 smart00275 G_alpha G protein a 96.5 0.0077 1.7E-07 66.6 8.1 67 89-155 183-264 (342)
414 cd01854 YjeQ_engC YjeQ/EngC. 96.4 0.0028 6.1E-08 68.5 4.2 22 10-34 163-184 (287)
415 COG0541 Ffh Signal recognition 96.4 0.0089 1.9E-07 66.2 7.8 140 7-155 99-252 (451)
416 TIGR03597 GTPase_YqeH ribosome 96.4 0.0039 8.4E-08 69.6 5.2 114 9-155 155-279 (360)
417 PRK06995 flhF flagellar biosyn 96.4 0.0098 2.1E-07 68.2 8.5 21 10-33 258-278 (484)
418 PF02492 cobW: CobW/HypB/UreG, 96.4 0.0035 7.5E-08 62.7 4.2 82 89-179 84-172 (178)
419 cd01859 MJ1464 MJ1464. This f 96.3 0.0049 1.1E-07 60.0 5.1 22 8-32 101-122 (156)
420 PRK14721 flhF flagellar biosyn 96.3 0.0079 1.7E-07 67.9 7.2 64 89-155 269-339 (420)
421 TIGR03596 GTPase_YlqF ribosome 96.3 0.0061 1.3E-07 65.5 5.9 56 98-155 5-61 (276)
422 cd01856 YlqF YlqF. Proteins o 96.3 0.0058 1.3E-07 60.6 5.3 57 97-155 2-59 (171)
423 PRK11537 putative GTP-binding 96.3 0.027 5.9E-07 61.7 10.9 133 17-155 10-163 (318)
424 PRK05703 flhF flagellar biosyn 96.2 0.02 4.3E-07 65.2 9.4 65 89-155 299-370 (424)
425 TIGR00092 GTP-binding protein 96.1 0.022 4.8E-07 63.0 9.4 98 9-125 3-109 (368)
426 TIGR02475 CobW cobalamin biosy 96.1 0.038 8.2E-07 61.2 11.3 63 89-155 92-186 (341)
427 cd02032 Bchl_like This family 96.1 0.021 4.5E-07 61.0 9.0 65 89-154 115-184 (267)
428 PRK12723 flagellar biosynthesi 96.1 0.039 8.4E-07 61.9 11.3 66 88-155 253-325 (388)
429 cd03692 mtIF2_IVc mtIF2_IVc: t 96.0 0.04 8.6E-07 47.8 8.6 57 380-447 13-69 (84)
430 PRK10818 cell division inhibit 96.0 0.023 5E-07 60.7 8.5 66 88-155 112-186 (270)
431 KOG0410 Predicted GTP binding 96.0 0.021 4.5E-07 60.7 7.6 112 10-155 180-307 (410)
432 cd01849 YlqF_related_GTPase Yl 95.9 0.015 3.2E-07 56.7 6.2 41 115-155 1-42 (155)
433 TIGR03371 cellulose_yhjQ cellu 95.9 0.079 1.7E-06 55.6 12.2 64 90-155 115-181 (246)
434 PRK13796 GTPase YqeH; Provisio 95.8 0.01 2.3E-07 66.3 5.3 24 9-35 161-184 (365)
435 COG0552 FtsY Signal recognitio 95.8 0.026 5.7E-07 60.7 7.6 136 6-154 137-296 (340)
436 COG0012 Predicted GTPase, prob 95.7 0.031 6.7E-07 61.1 7.9 93 9-125 3-109 (372)
437 KOG1486 GTP-binding protein DR 95.7 0.011 2.3E-07 60.5 4.0 83 9-126 63-152 (364)
438 cd04178 Nucleostemin_like Nucl 95.6 0.03 6.5E-07 55.7 6.7 41 115-155 1-43 (172)
439 PRK00098 GTPase RsgA; Reviewed 95.6 0.013 2.9E-07 63.6 4.6 21 10-33 166-186 (298)
440 PRK14723 flhF flagellar biosyn 95.5 0.028 6.2E-07 67.5 7.6 66 89-155 263-336 (767)
441 PRK09563 rbgA GTPase YlqF; Rev 95.5 0.016 3.5E-07 62.6 5.0 57 97-155 7-64 (287)
442 cd01855 YqeH YqeH. YqeH is an 95.4 0.018 3.8E-07 58.2 4.8 56 98-155 19-74 (190)
443 PRK08099 bifunctional DNA-bind 95.4 0.1 2.3E-06 58.9 11.3 30 6-38 217-246 (399)
444 TIGR01007 eps_fam capsular exo 95.4 0.043 9.2E-07 56.1 7.5 67 88-155 126-193 (204)
445 TIGR01281 DPOR_bchL light-inde 95.4 0.062 1.3E-06 57.4 8.9 67 88-155 114-185 (268)
446 COG1419 FlhF Flagellar GTP-bin 95.3 0.04 8.6E-07 61.1 7.1 130 8-155 203-351 (407)
447 KOG0447 Dynamin-like GTP bindi 95.2 0.23 5.1E-06 56.0 12.7 100 58-175 393-507 (980)
448 KOG0780 Signal recognition par 95.2 0.076 1.6E-06 57.8 8.7 131 17-155 107-253 (483)
449 PF07015 VirC1: VirC1 protein; 95.1 0.09 2E-06 54.2 8.6 67 86-154 80-152 (231)
450 KOG2743 Cobalamin synthesis pr 95.0 0.23 4.9E-06 52.4 11.2 82 89-181 145-243 (391)
451 TIGR03348 VI_IcmF type VI secr 95.0 0.057 1.2E-06 69.5 8.3 44 112-155 200-256 (1169)
452 PRK13695 putative NTPase; Prov 94.9 0.16 3.5E-06 50.4 9.8 39 112-152 95-136 (174)
453 KOG2485 Conserved ATP/GTP bind 94.9 0.035 7.6E-07 58.9 5.1 64 7-100 142-206 (335)
454 cd01983 Fer4_NifH The Fer4_Nif 94.9 0.16 3.5E-06 44.2 8.8 44 91-134 35-79 (99)
455 KOG2423 Nucleolar GTPase [Gene 94.9 0.018 4E-07 62.3 3.0 25 5-32 304-328 (572)
456 CHL00072 chlL photochlorophyll 94.8 0.09 2E-06 56.9 8.1 65 89-154 115-184 (290)
457 KOG2484 GTPase [General functi 94.5 0.039 8.5E-07 60.3 4.5 59 6-101 250-308 (435)
458 KOG4423 GTP-binding protein-li 94.5 0.0026 5.6E-08 62.0 -4.1 115 9-155 26-148 (229)
459 PF06858 NOG1: Nucleolar GTP-b 94.5 0.1 2.2E-06 41.4 5.4 48 106-153 5-58 (58)
460 cd02117 NifH_like This family 94.4 0.15 3.3E-06 52.4 8.5 66 88-154 115-187 (212)
461 TIGR03597 GTPase_YqeH ribosome 94.1 0.11 2.5E-06 57.9 7.3 54 100-155 50-103 (360)
462 cd03702 IF2_mtIF2_II This fami 94.1 0.29 6.2E-06 43.5 8.3 67 371-452 4-70 (95)
463 KOG1424 Predicted GTP-binding 94.0 0.048 1E-06 61.4 3.9 24 8-34 314-337 (562)
464 cd02040 NifH NifH gene encodes 94.0 0.17 3.7E-06 53.9 8.0 38 88-125 115-153 (270)
465 TIGR01969 minD_arch cell divis 93.8 0.18 3.8E-06 53.1 7.7 66 88-155 107-173 (251)
466 KOG3887 Predicted small GTPase 93.7 0.16 3.5E-06 51.8 6.7 65 91-155 76-148 (347)
467 TIGR00157 ribosome small subun 93.7 0.1 2.2E-06 55.0 5.5 47 109-155 32-80 (245)
468 PRK05800 cobU adenosylcobinami 93.6 0.49 1.1E-05 46.9 10.0 139 10-185 3-155 (170)
469 KOG3022 Predicted ATPase, nucl 93.6 0.25 5.4E-06 51.8 8.0 77 79-155 146-223 (300)
470 PHA02518 ParA-like protein; Pr 93.4 0.32 6.9E-06 49.6 8.5 65 88-154 75-145 (211)
471 PF06564 YhjQ: YhjQ protein; 93.3 0.64 1.4E-05 48.7 10.6 62 87-155 115-176 (243)
472 KOG1533 Predicted GTPase [Gene 93.3 0.054 1.2E-06 55.2 2.5 71 85-155 92-176 (290)
473 PF09547 Spore_IV_A: Stage IV 93.3 0.67 1.5E-05 51.6 11.1 128 9-153 18-191 (492)
474 KOG1491 Predicted GTP-binding 93.2 0.26 5.6E-06 53.0 7.6 100 7-125 19-126 (391)
475 COG3523 IcmF Type VI protein s 93.1 0.18 3.9E-06 63.4 7.2 66 90-155 174-269 (1188)
476 COG1618 Predicted nucleotide k 93.0 1.2 2.5E-05 43.3 10.9 49 105-155 92-143 (179)
477 PRK01889 GTPase RsgA; Reviewed 92.9 0.13 2.7E-06 57.5 5.0 24 10-36 197-220 (356)
478 COG1149 MinD superfamily P-loo 92.9 0.25 5.5E-06 51.7 6.7 64 90-155 164-227 (284)
479 cd02034 CooC The accessory pro 92.9 0.15 3.3E-06 47.1 4.6 21 11-34 2-22 (116)
480 PRK12289 GTPase RsgA; Reviewed 92.8 0.17 3.7E-06 56.2 5.8 47 109-155 85-133 (352)
481 TIGR01968 minD_bact septum sit 92.7 0.24 5.2E-06 52.3 6.7 65 89-155 111-176 (261)
482 KOG0082 G-protein alpha subuni 92.5 0.32 6.9E-06 53.4 7.2 82 58-155 179-275 (354)
483 PRK13232 nifH nitrogenase redu 92.5 0.39 8.4E-06 51.4 8.0 66 88-153 115-185 (273)
484 PRK01889 GTPase RsgA; Reviewed 92.3 0.28 6.2E-06 54.7 6.9 45 111-155 110-155 (356)
485 PRK14493 putative bifunctional 92.1 0.2 4.3E-06 53.6 5.1 20 11-33 4-23 (274)
486 PF13555 AAA_29: P-loop contai 92.0 0.15 3.2E-06 41.4 3.0 17 17-33 29-45 (62)
487 CHL00175 minD septum-site dete 91.9 0.35 7.5E-06 52.0 6.8 65 89-155 126-191 (281)
488 TIGR01287 nifH nitrogenase iro 91.8 0.46 9.9E-06 50.9 7.5 63 89-151 115-183 (275)
489 cd03701 IF2_IF5B_II IF2_IF5B_I 91.6 0.99 2.1E-05 40.1 8.1 71 371-457 4-74 (95)
490 cd01854 YjeQ_engC YjeQ/EngC. 91.4 0.19 4.1E-06 54.3 4.1 45 111-155 76-122 (287)
491 PRK00098 GTPase RsgA; Reviewed 91.1 0.25 5.4E-06 53.7 4.7 46 110-155 77-124 (298)
492 PRK13230 nitrogenase reductase 91.0 0.36 7.7E-06 51.9 5.7 39 88-126 115-154 (279)
493 PRK13796 GTPase YqeH; Provisio 91.0 0.64 1.4E-05 52.1 7.9 51 102-155 58-109 (365)
494 TIGR03029 EpsG chain length de 90.8 0.6 1.3E-05 50.0 7.2 63 88-151 211-274 (274)
495 TIGR03815 CpaE_hom_Actino heli 90.7 0.79 1.7E-05 50.4 8.2 66 88-155 203-268 (322)
496 PF01656 CbiA: CobQ/CobB/MinD/ 90.5 0.74 1.6E-05 46.1 7.2 64 90-155 95-161 (195)
497 cd02035 ArsA ArsA ATPase funct 90.4 1.3 2.9E-05 45.6 9.1 67 89-155 113-183 (217)
498 PRK12288 GTPase RsgA; Reviewed 90.3 0.84 1.8E-05 50.6 7.9 45 111-155 118-163 (347)
499 smart00010 small_GTPase Small 89.8 0.61 1.3E-05 42.7 5.4 19 10-31 2-20 (124)
500 cd03703 aeIF5B_II aeIF5B_II: T 89.8 1.6 3.5E-05 39.7 7.8 68 377-452 10-86 (110)
No 1
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9e-174 Score=1365.30 Aligned_cols=811 Identities=65% Similarity=1.076 Sum_probs=787.5
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
-.++.+ ++|+|||||||+++|...+|+|+...+|.+|++|.+.+||+|||||+++.+++.++..+..++.+..+.++
T Consensus 19 iRNmSV---IAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 19 IRNMSV---IAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred cccceE---EEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 356777 99999999999999999999999777999999999999999999999999999988666666666677788
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCHHHHH
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAY 167 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~ 167 (824)
+++.|||||+|||+||++|+..|||+.|||++|||+++|++.||+++++|+..+++.+++|+|||||.++||+.+.+++|
T Consensus 96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRAlLELq~~~EeLy 175 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRALLELQLSQEELY 175 (842)
T ss_pred cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHHHHhhcCCHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcccCCCCC
Q 003378 168 QTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATR 247 (824)
Q Consensus 168 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~~~~~~ 247 (824)
+.|+++++.+|.+++.|.+.++|++.+.|.+|+|.|+||+|||+|+++|||++|.+||++|+.+|..+|||++|++++++
T Consensus 176 qtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LWg~~~f~~ktk 255 (842)
T KOG0469|consen 176 QTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLWGDNFFNPKTK 255 (842)
T ss_pred HHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHHHHHhhcccccCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecC--CCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhhhccchHHHH
Q 003378 248 KWTSRN--TGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALL 325 (824)
Q Consensus 248 ~~~~~~--~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LL 325 (824)
+|..+. ++++..++.|+.|+|.|||++++++++...+.+..+|+.+++.+..++....+++|++.+|++|+|...+||
T Consensus 256 k~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~eGK~LlK~vMr~wLPAadall 335 (842)
T KOG0469|consen 256 KWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEGKALLKVVMRKWLPAADALL 335 (842)
T ss_pred cccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceeccccccccchHHHHHHHHHhcchHHHHH
Confidence 998765 366778999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred HHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEEcC
Q 003378 326 EMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMG 405 (824)
Q Consensus 326 d~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~~ 405 (824)
++|.-+||||..+|.||...+|+||.+++.+-++++|||++|+.+||+|+.++.++|+|++|+|||||++..|+.+++.|
T Consensus 336 emIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFGRVFsG~v~~G~KvRiqg 415 (842)
T KOG0469|consen 336 EMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVFTGLKVRIQG 415 (842)
T ss_pred HHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCceEEEEeeeecceeccCcEEEEeC
Confidence 99999999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccccccccceeeecCCCCCccccccccccCCceEEEEE
Q 003378 406 PNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAV 485 (824)
Q Consensus 406 ~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~~~~~~tgTl~~~~~~~~~~~~~~~~~~~Pv~~~aV 485 (824)
|||.+|++++.+...|.+..+|||+..++|+.++||||+++.|++++..+|||+++.+. +..++.++|+.+|++.++|
T Consensus 416 PnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlvGvDqfLvKtGTiTt~e~--AHNmrvMKFSVSPVV~VAV 493 (842)
T KOG0469|consen 416 PNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLVGVDQFLVKTGTITTSEA--AHNMRVMKFSVSPVVRVAV 493 (842)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEeehhHhhhccCceeehhh--hccceEEEeeccceEEEEE
Confidence 99999999888888899999999999999999999999999999999999999999887 8889999999999999999
Q ss_pred EeCCCCCHhHHHHHHHHHHhcCCceEEEecCCCcEEEEecchHHHHHHHHHHHhhccCCeEEEEeCCeEeEEeccccccc
Q 003378 486 QCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSC 565 (824)
Q Consensus 486 ep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g~GElHLei~~~rL~~~~~~~v~v~~s~p~V~yrETi~~~~~ 565 (824)
|++|+.|++||.++|++|++.||.+.+..+|+||++|.|.||||||||+++|++.| ++|.++.|+|.|+||||+.+.++
T Consensus 494 e~Knp~DLpKLvEGLkrLakSDP~v~~~~~esGehiiAgaGeLHLEICLkDLeedh-A~iPlk~sdPvVsYrEtvs~~ss 572 (842)
T KOG0469|consen 494 EAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGAGELHLEICLKDLEEDH-ACIPLKKSDPVVSYRETVSEESS 572 (842)
T ss_pred ecCChhhhHHHHHHHHHHhccCCeEEEEeccCCceEEeccchhhHHHHHhhHhhcc-cCCceecCCCeeeeecccccccc
Confidence 99999999999999999999999999999999999999999999999999999999 89999999999999999999999
Q ss_pred ceeeeecCCCeeEEEEEEeeCchhhhhhhcCCcCCCCCChhhHHHhhhhhcCCchhccCeEEEeccCCCCCceEEecccC
Q 003378 566 RTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKG 645 (824)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gp~~~g~n~~~~~~~g 645 (824)
..++++|+|+||+++++++||++++.+.|+.|.++++|++|.|+..+.+.|+||.+++++||||||+..|+|+++|.|+|
T Consensus 573 ~~~lsKSpNKHNRi~mtaeP~~~~l~~~i~~g~v~~rd~fK~rAr~~aeky~~dvt~aRKIWCfgPd~tg~Nll~D~TK~ 652 (842)
T KOG0469|consen 573 QTCLSKSPNKHNRIYMTAEPMDDGLSDDIENGKVNARDEFKARARILAEKYGWDVTEARKIWCFGPDGTGPNLLVDQTKG 652 (842)
T ss_pred hhhhccCCcccceeEEecccCCchhhhhhhcCccChhHHHHHHHHHHHHHhCCchhhhheeeEeCCCCCCCcEEEecchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHcCCccCCCcceeEEEEeeeeecccccccCCCChHHHHHHHHHHHHHhcCCccccc-----
Q 003378 646 VQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEP----- 720 (824)
Q Consensus 646 ~~~~~~~~~~i~~Gf~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~a~~~a~~~LlEP----- 720 (824)
.+|++++++++.+|||||+++|||+||.|++|+|.+.|..+|+|.+|++++|+++.+|++|+.+++.|+|+|+||
T Consensus 653 vqylnEIKdsVvagFqwA~keG~l~~E~mRgvrfni~DvtLHADAIHRGggQiipt~rr~~ya~~l~A~P~l~EPvylvE 732 (842)
T KOG0469|consen 653 VQYLNEIKDSVVAGFQWATKEGPLFGENMRGVRFNILDVTLHADAIHRGGGQIIPTARRVLYASVLTAGPILQEPVYLVE 732 (842)
T ss_pred hHHHHHHHHHHHHHHHHHhccCCcccccccceeEEeeeeeeehhhhhcCCCeechHHHHHHHHHHHhcCceecCceEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ------cccchheccccccceeeeeeccCCCCceEEEEEechhhhcCchHHHhhhCCCceEeEeEecceeecCCCCCCCc
Q 003378 721 ------ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPG 794 (824)
Q Consensus 721 ------~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~~~~ 794 (824)
++|.||++|++|||++.+++...|++++.|+|++|+.|||||..+|||.|+|+|.+||.|+||+++|+||+|.+
T Consensus 733 Iq~pe~avGgiy~vLn~kRG~v~~e~q~~Gtp~f~vkayLPVnESFgFt~dLrs~t~GqAfpq~vFdHws~lpgdp~dp~ 812 (842)
T KOG0469|consen 733 IQCPEQAVGGIYGVLNRKRGHVFEEEQVPGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQMVFDHWSILPGDPLDPT 812 (842)
T ss_pred EeCchhhhchhhheeeccccceecccccCCCcceEEEEEeecccccccchhhhcccCCccccceeeeccccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCcccccccC
Q 003378 795 SQASQLVLDIRKRKGLKEQMTPLSEYEDKL 824 (824)
Q Consensus 795 ~~a~~~i~~~r~rkGl~~~i~~~~~~~~~~ 824 (824)
|..-+++.++||||||.|.+|.+.+|.|||
T Consensus 813 sk~~~iV~~~RKrkglke~~P~~~~y~Dkl 842 (842)
T KOG0469|consen 813 SKPGQIVLATRKRKGLKEGVPDLDEYLDKL 842 (842)
T ss_pred ccchHHHHHHHHhcCCCCCCCChHHHhhcC
Confidence 999999999999999999999999999997
No 2
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=100.00 E-value=3.2e-150 Score=1357.81 Aligned_cols=816 Identities=92% Similarity=1.417 Sum_probs=738.8
Q ss_pred CceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccc
Q 003378 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 5 ~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (824)
..+-.+||| +||+|||||||+++|++.+|.+++...|.++++|++++|++||+|++++.+++.|......+++....
T Consensus 16 ~~~Irni~i---iGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~ 92 (843)
T PLN00116 16 KHNIRNMSV---IAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGE 92 (843)
T ss_pred ccCccEEEE---EcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccc
Confidence 456679999 99999999999999999999998877888889999999999999999999999996322112222222
Q ss_pred cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCHH
Q 003378 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGE 164 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~ 164 (824)
.+++++.|||||||||.||..++.+|++.+|+||+|||+.+|++.||+.+|+++.+.++|+|+|+||||++++|++.+++
T Consensus 93 ~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~~~~~~~~~ 172 (843)
T PLN00116 93 RDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGE 172 (843)
T ss_pred cCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccchhhcCCHH
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcccCC
Q 003378 165 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 244 (824)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~~~ 244 (824)
++|..++++++++|.++..|..+..+.++|+|.++||.|+|+++||+|++++|+.+|.++|+++...+.+++||++||++
T Consensus 173 ~~~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~~~~~ 252 (843)
T PLN00116 173 EAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 252 (843)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccceEcC
Confidence 99999999999999998888755556678999999999999999999999999999999999989999999999999998
Q ss_pred CCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhhhccchHHH
Q 003378 245 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSAL 324 (824)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~L 324 (824)
+++++...+.......+.|.+++++|+|+|++++++.|+++|++|+++++++|+.+|+....+++++.++..|+|.++.|
T Consensus 253 ~~~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~~~~~l~~~~~~pv~~~s~~L 332 (843)
T PLN00116 253 ATKKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKELMGKALMKRVMQTWLPASDAL 332 (843)
T ss_pred CCceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhhhhHHHHHHHHHhhcCChHHH
Confidence 77767655422234467899999999999999999999999999999988899999997788999999999999999999
Q ss_pred HHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEEc
Q 003378 325 LEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIM 404 (824)
Q Consensus 325 Ld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~ 404 (824)
||+|++|+|||.+++.+++..++.++.+++....+..||+++|++|+|||+..+++.|++++|+|||||+|++||.|+++
T Consensus 333 ld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVysGtL~~g~~v~v~ 412 (843)
T PLN00116 333 LEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGTVATGMKVRIM 412 (843)
T ss_pred HHHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEeeeecCCCEEEEe
Confidence 99999999999998888888777765444445678899999999999999998888887799999999999999999999
Q ss_pred CCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccccccccceeeecCCCCCccccccccccCCceEEEE
Q 003378 405 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSVSPVVRVA 484 (824)
Q Consensus 405 ~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~~~~~~tgTl~~~~~~~~~~~~~~~~~~~Pv~~~a 484 (824)
++|+++++++....++|++||.++|++.+++++|+|||||+|.|++.+.++++||++.....+.+++++.++.+|+++++
T Consensus 413 ~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~gl~~~~~~gdTL~~~~~~~~~~l~~~~~~~~Pv~~~a 492 (843)
T PLN00116 413 GPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIKAMKFSVSPVVRVA 492 (843)
T ss_pred CCCCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEEeecccccCCceecCCcccCCccccccccCCCceEEEE
Confidence 99887765544555799999999999999999999999999999998644444998876111566778877669999999
Q ss_pred EEeCCCCCHhHHHHHHHHHHhcCCceEEEecCCCcEEEEecchHHHHHHHHHHHhhccC-CeEEEEeCCeEeEEeccccc
Q 003378 485 VQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMG-GAEIIKSDPVVSFRETVLEK 563 (824)
Q Consensus 485 Vep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g~GElHLei~~~rL~~~~~~-~v~v~~s~p~V~yrETi~~~ 563 (824)
|||.+++|+++|.+||++|++|||+|++..++|||++|+||||+|||||++||+++| + +|++++|+|+|+|||||.++
T Consensus 493 IeP~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g~GElHLEi~~~rL~~~f-~~~vev~~s~p~V~yrETI~~~ 571 (843)
T PLN00116 493 VQCKNASDLPKLVEGLKRLAKSDPMVQCTIEESGEHIIAGAGELHLEICLKDLQDDF-MGGAEIKVSDPVVSFRETVLEK 571 (843)
T ss_pred EEECChhhHHHHHHHHHHHHHhCCCeEEEEcCCCCEEEEEccHHHHHHHHHHHHHHh-hCCCcEEEcCCeEEEEeccccc
Confidence 999999999999999999999999999977799999999999999999999999999 7 89999999999999999998
Q ss_pred ccceeeeecCCCeeEEEEEEeeCchhhhhhhcCCcCCCCCChhhHHHhhhhhcCCchhccCeEEEeccCCCCCceEEecc
Q 003378 564 SCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMC 643 (824)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gp~~~g~n~~~~~~ 643 (824)
++..+..+.+++|++++++++|++.++.+.|+.+.+...++.+.+...+...|+|+...++++|+|||+..|+|+|++.+
T Consensus 572 ~~~~~~~~~~~~~~~v~l~iePl~~~~~~~ie~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~gp~~~~~~~~~~~~ 651 (843)
T PLN00116 572 SCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLAKKIWCFGPETTGPNMVVDMC 651 (843)
T ss_pred ccCcEEEecCCceEEEEEEEEECCHHHHHHHHcCCcccCcchHHHHHHhhhhcCcchhhhcCeeeecCCCCCceEEEECC
Confidence 76554456688899999999999999888888887766666555556666679999999999999999888899999999
Q ss_pred cCccchHHHHHHHHHHHHHHHHcCCccCCCcceeEEEEeeeeecccccccCCCChHHHHHHHHHHHHHhcCCccccc---
Q 003378 644 KGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEP--- 720 (824)
Q Consensus 644 ~g~~~~~~~~~~i~~Gf~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~a~~~a~~~LlEP--- 720 (824)
.|.+|+++++++|++||++||++|||||+||+||+|+|+|+++|.|+.++.+++|++|+++||++|+++|+|+||||
T Consensus 652 ~g~~~~~~i~~ai~~G~~~a~~~GpL~g~Pv~~V~v~l~d~~~h~d~~~~~~~~f~~A~~~a~~~Al~~a~p~LlEPi~~ 731 (843)
T PLN00116 652 KGVQYLNEIKDSVVAGFQWATKEGALAEENMRGICFEVCDVVLHADAIHRGGGQIIPTARRVIYASQLTAKPRLLEPVYL 731 (843)
T ss_pred cchhhHHHHHHHHHHHHHHHHhcCCccCCeeeeEEEEEEEeeccCcccccchhhHHHHHHHHHHHHHHhCCCEEeeceeE
Confidence 99999999999999999999999999999999999999999999988888889999999999999999999999999
Q ss_pred --------cccchheccccccceeeeeeccCCCCceEEEEEechhhhcCchHHHhhhCCCceEeEeEecceeecCCCCCC
Q 003378 721 --------ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLE 792 (824)
Q Consensus 721 --------~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~~ 792 (824)
++|+|++||++|||+|+++++.+++..++|+|++|++|||||+++|||+|+|+|+|+|+|+||++||+||||
T Consensus 732 veI~~p~~~~G~V~~dL~~RRG~i~~~~~~~~t~~~~I~A~vPl~e~~gy~~~LRs~T~G~g~~~~~f~~y~~v~~dp~~ 811 (843)
T PLN00116 732 VEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLE 811 (843)
T ss_pred EEEEccHHHHhHHHHHHHhcCCccceeeecCCCceEEEEEEeeHHHHcCCCHHHHhhCCCCCeEEEEeceeEECCCCCCC
Confidence 999999999999999999998777667999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHhcCCCCCCCCcccccccC
Q 003378 793 PGSQASQLVLDIRKRKGLKEQMTPLSEYEDKL 824 (824)
Q Consensus 793 ~~~~a~~~i~~~r~rkGl~~~i~~~~~~~~~~ 824 (824)
++|+|+++|+++||||||+|++|.+.+|+|||
T Consensus 812 ~~~~a~~~~~~~R~rKGl~~~~~~~~~~~d~~ 843 (843)
T PLN00116 812 AGSQAAQLVADIRKRKGLKEQMPPLSEYEDKL 843 (843)
T ss_pred chhHHHHHHHHHHhhCCCCCCCCCHHHhcccC
Confidence 99999999999999999999999999999997
No 3
>PTZ00416 elongation factor 2; Provisional
Probab=100.00 E-value=7.3e-149 Score=1342.96 Aligned_cols=807 Identities=68% Similarity=1.115 Sum_probs=730.6
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+..+||+ +||+|||||||+++|++.+|.+++...|.++++|++++|++||+||+++.+++.|.... ....
T Consensus 17 ~~irni~i---iGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~------~~~~ 87 (836)
T PTZ00416 17 DQIRNMSV---IAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDL------EDGD 87 (836)
T ss_pred cCcCEEEE---ECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeeccc------cccc
Confidence 45579999 99999999999999999999998877888888999999999999999999999996210 1122
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCHHH
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 165 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~ 165 (824)
+++++.|||||||||.||..++.++++.+|+||+|||+++|++.||+.+|+++...++|+|+|+||||+++++++.++++
T Consensus 88 ~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~ 167 (836)
T PTZ00416 88 DKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILELQLDPEE 167 (836)
T ss_pred CCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcCCCHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcccCCC
Q 003378 166 AYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 245 (824)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~~~~ 245 (824)
+|..++++++++|..+..|..+......|+|..+||||+|+.+||+|++++|+..|.++|+++...+.+++||++||+++
T Consensus 168 ~~~~~~~ii~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l~~~~wg~~~~~~~ 247 (836)
T PTZ00416 168 IYQNFVKTIENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKMMERLWGDNFFDAK 247 (836)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHHHHHHhccccccCC
Confidence 99999999999999988665433223468999999999999999999999999999999999999999999999999887
Q ss_pred CCceeecC--CCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhhhccchHH
Q 003378 246 TRKWTSRN--TGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSA 323 (824)
Q Consensus 246 ~~~~~~~~--~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~ 323 (824)
++++...+ ......++.|++++++|+|+|++++++.|+++|++||+++|+++++++++...+.++++++++|+|++++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~~~~~~~Pv~~~ 327 (836)
T PTZ00416 248 TKKWIKDETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLLKAVMQKWLPAADT 327 (836)
T ss_pred CCEEEeccCCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHHHHHHHHHhchHHH
Confidence 77665543 2233457899999999999999999999999999999988899999997555568999999999999999
Q ss_pred HHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEE
Q 003378 324 LLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRI 403 (824)
Q Consensus 324 LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v 403 (824)
|||+|++|+|||.+++..+...++.++.++.....++.|++++|++|+|||+..+++.|++++|+|||||+|++||.||+
T Consensus 328 Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV~SGtL~~g~~v~v 407 (836)
T PTZ00416 328 LLEMIVDHLPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSGTVATGQKVRI 407 (836)
T ss_pred HHHHHHHhCCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEEEeeeecCCCEEEE
Confidence 99999999999999887777666655433333456789999999999999999999888878999999999999999999
Q ss_pred cCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccccccccceeeecCCCCCccccccccccCCceEEE
Q 003378 404 MGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSVSPVVRV 483 (824)
Q Consensus 404 ~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~~~~~~tgTl~~~~~~~~~~~~~~~~~~~Pv~~~ 483 (824)
+++|++.+.+++++..+|++||.++|++..++++|+|||||+|.|+++++++||||++... +..+.++.++++|++++
T Consensus 408 ~~~~~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~gl~~~~~~tgTL~~~~~--~~~l~~i~~~~~Pv~~v 485 (836)
T PTZ00416 408 QGPNYVPGKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLVGVDQYLVKSGTITTSET--AHNIRDMKYSVSPVVRV 485 (836)
T ss_pred eCCCCCCCCcccchheecceeEEecCCCceECcEECCCCEEEEEecccceecceeecCCCC--cccccccccCCCCeEEE
Confidence 9998877655433334699999999999999999999999999999986668999988765 66777888766999999
Q ss_pred EEEeCCCCCHhHHHHHHHHHHhcCCceEEEecCCCcEEEEecchHHHHHHHHHHHhhccCCeEEEEeCCeEeEEeccccc
Q 003378 484 AVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEK 563 (824)
Q Consensus 484 aVep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g~GElHLei~~~rL~~~~~~~v~v~~s~p~V~yrETi~~~ 563 (824)
+|||.+++|+++|.+||++|.+|||++.++.++|||++|+||||+|||+|++||+++| ++|++++|+|+|+|||||.+.
T Consensus 486 aIep~~~~d~~kL~~aL~~L~~eDPsl~~~~~etgE~il~g~GElHLei~l~~L~~~f-~~vev~~s~P~V~yrETI~~~ 564 (836)
T PTZ00416 486 AVEPKNPKDLPKLVEGLKRLAKSDPLVVCTTEESGEHIVAGCGELHVEICLKDLEDDY-ANIDIIVSDPVVSYRETVTEE 564 (836)
T ss_pred EEEECCHHHHHHHHHHHHHHHhhCCceEEEEcCCCCeEEEeCcHhHHHHHHHHHHHHh-cCcceEecCCEEEEEEEeccc
Confidence 9999999999999999999999999999987899999999999999999999999999 789999999999999999999
Q ss_pred ccceeeeecCCCeeEEEEEEeeCchhhhhhhcCCcCCCCCChhhHHHhhhhhcCCchhccCeEEEeccCCCCCceEEecc
Q 003378 564 SCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMC 643 (824)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gp~~~g~n~~~~~~ 643 (824)
++..+..+.++++++++++++||+.++.+.++.+.+......+.+...+...|+|++..++++|+|+|...|+|+++|.+
T Consensus 565 s~~~~~~~~~~~~~~v~~~~ePl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~g~nil~~~~ 644 (836)
T PTZ00416 565 SSQTCLSKSPNKHNRLYMKAEPLTEELAEAIEEGKVGPEDDPKERANFLADKYEWDKNDARKIWCFGPENKGPNVLVDVT 644 (836)
T ss_pred ccceEEEECCCCCeeEEEEEEECCHHHHhHhhcCccccccchhHHHhhhhcccCcchhhhhCeeeccCCCCCCcEEEecC
Confidence 87777777788889999999999999888888887655555544444555689999999999999999988999999999
Q ss_pred cCccchHHHHHHHHHHHHHHHHcCCccCCCcceeEEEEeeeeecccccccCCCChHHHHHHHHHHHHHhcCCccccc---
Q 003378 644 KGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEP--- 720 (824)
Q Consensus 644 ~g~~~~~~~~~~i~~Gf~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~a~~~a~~~LlEP--- 720 (824)
.+.+|.+.++++|++||++|+++|||||+||+||+|+|+|+++|.|+.++..++|++|+++||++|+++|+|+||||
T Consensus 645 ~~~~~~~~~~~av~~G~~~a~~~GpL~g~pv~dv~v~l~d~~~h~~~~~~~~~~f~~a~~~a~~~a~~~a~p~LlEPi~~ 724 (836)
T PTZ00416 645 KGVQYMNEIKDSCVSAFQWATKEGVLCDENMRGIRFNILDVTLHADAIHRGAGQIIPTARRVFYACELTASPRLLEPMFL 724 (836)
T ss_pred CcccchHHHHHHHHHHHHHHHhcCcccCCcccceEEEEEEeeccccccccchHHHHHHHHHHHHHHHhhCCCEEEeeeEE
Confidence 99999999999999999999999999999999999999999999877788889999999999999999999999999
Q ss_pred --------cccchheccccccceeeeeeccCCCCceEEEEEechhhhcCchHHHhhhCCCceEeEeEecceeecCCCCCC
Q 003378 721 --------ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLE 792 (824)
Q Consensus 721 --------~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~~ 792 (824)
++|+|++||++|||+|+++++.+++..++|+|++|++|||||+++|||+|+|+|+|+|+|+||++||+||||
T Consensus 725 veI~~p~~~lg~V~~dL~~RRG~i~~~~~~~~t~~~~I~a~vP~~e~~gy~~~LRs~T~G~g~~~~~F~~y~~vp~dp~~ 804 (836)
T PTZ00416 725 VDITAPEDAMGGIYSVLNRRRGVVIGEEQRPGTPLSNIKAYLPVAESFGFTAALRAATSGQAFPQCVFDHWQVVPGDPLE 804 (836)
T ss_pred EEEEEcHHHHhHHHHHHHhcCCCccCcccCCCCCcEEEEEEEehHHhcCCCHHHHhhCcCCceEEEEeccEEECCCCCCC
Confidence 999999999999999999998777667999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHhcCCCCCCCCcccccccC
Q 003378 793 PGSQASQLVLDIRKRKGLKEQMTPLSEYEDKL 824 (824)
Q Consensus 793 ~~~~a~~~i~~~r~rkGl~~~i~~~~~~~~~~ 824 (824)
.+|+|++||+++||||||++++|.+.+|+|||
T Consensus 805 ~~~~a~~~~~~~R~rKGl~~~~~~~~~~~~~~ 836 (836)
T PTZ00416 805 PGSKANEIVLSIRKRKGLKPEIPDLDNYLDKL 836 (836)
T ss_pred chhHHHHHHHHHHHhCCCCCCCCCHHHhcccC
Confidence 99999999999999999999999999999997
No 4
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-135 Score=1103.92 Aligned_cols=802 Identities=39% Similarity=0.698 Sum_probs=741.4
Q ss_pred CCCceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcc-cccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcc
Q 003378 3 SYCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIA-QEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSY 81 (824)
Q Consensus 3 ~~~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~-~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~ 81 (824)
+...+-++|++ +||-+||||+|.+.|..+++.-- +......+++|.+..|++||+||++...++....
T Consensus 123 ~~p~~irnV~l---~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D-------- 191 (971)
T KOG0468|consen 123 DNPERIRNVGL---VGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSD-------- 191 (971)
T ss_pred cCcceEEEEEE---eeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEec--------
Confidence 34567789999 99999999999999988877221 1111125799999999999999999999887653
Q ss_pred ccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccC
Q 003378 82 RGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQV 161 (824)
Q Consensus 82 ~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~ 161 (824)
.+++++.+|++|||||++|+.|+.++++.+|++|+|||+.+|++.+|+++++++.+.++|+++||||+||+++||+.
T Consensus 192 ---~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLilELkL 268 (971)
T KOG0468|consen 192 ---SKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLILELKL 268 (971)
T ss_pred ---CcCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHHHHHhcC
Confidence 46689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcC-CChHHHHHHhhcCc
Q 003378 162 DGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFG-VDESKMMERLWGEN 240 (824)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~-id~~~l~~~l~~~~ 240 (824)
.|.++|.+++.+++++|..+.+|.... ..-++|..|||+|+|+..||+|++.+||.+|.+.++ ++...+..++||+-
T Consensus 269 PP~DAY~KLrHii~~iN~~is~~s~~~--~~~~sP~~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~Fa~RLWGdv 346 (971)
T KOG0468|consen 269 PPMDAYYKLRHIIDEINNLISTFSKDD--NPVVSPILGNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFAKRLWGDV 346 (971)
T ss_pred ChHHHHHHHHHHHHHhcchhhhccccc--ccccccccCceeeeccccceeeehHHHHHHHHHhcCCcchhhhhhhhhccc
Confidence 999999999999999999988775431 245789999999999999999999999999999887 88999999999999
Q ss_pred ccCCCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhhhccc
Q 003378 241 FFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPA 320 (824)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~ 320 (824)
||+.++.+|+.++.++ ...++|++|+|+|+|+++..+....++.+...|.++|+.|+.++++.+.+.|++-++++|+..
T Consensus 347 Yf~~ktrkF~kk~~~~-~~~rsFVeFILePlYKi~sq~igd~~~~l~~~l~e~~v~ls~e~~k~n~rPll~lvc~~ffg~ 425 (971)
T KOG0468|consen 347 YFHSKTRKFVKKPPDG-SGSRSFVEFILEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKEAYKLNPRPLLRLVCKSFFGI 425 (971)
T ss_pred cccccccccccCCCCC-cccchhhhhhHhHHHHHHHHHhcchhhhhhhhhhhhcccccHHHhhcCccHHHHHHHHHhccc
Confidence 9999998898877533 346799999999999999999988889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEEeeeecCCCE
Q 003378 321 SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLK 400 (824)
Q Consensus 321 ~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~ 400 (824)
...+.|+++.++|||.+....++...|.|+.+......+..|++++|++.++.|+++..+.-.|.+|+||+||+++.|+.
T Consensus 426 ~sgfvd~~v~hi~sP~e~a~~K~~hsy~G~~~~~i~~~m~~c~~~~pLm~h~tklyp~dD~~~f~~f~rv~Sg~~~~~q~ 505 (971)
T KOG0468|consen 426 ESGFVDMPVEHIPSPRENAARKAEHSYTGTKDSLIYEGMVECNASGPLMVHVTKLYPRDDTVQFHVFGRVYSGQVVTGQD 505 (971)
T ss_pred hhhhhHhhHhhcCChhhhhccccceeecCCCcchHHHHHHhhCCCCceeEEeecceecCCceeeeeeeeeeecceeecce
Confidence 99999999999999999888888888899877777788899999999999999999988877889999999999999999
Q ss_pred EEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccccccccceeeecCCCC-CccccccccccCCc
Q 003378 401 VRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEV-DAHPIRAMKFSVSP 479 (824)
Q Consensus 401 v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~~~~~~tgTl~~~~~~-~~~~~~~~~~~~~P 479 (824)
|.+++.|++....++.....|+++++..+++..+|..|+||.++.|.|+++.+.+|.|+++.+.+ ....|+++.|.+.|
T Consensus 506 V~vlgeny~leDEeD~~~~~v~el~v~~arY~i~V~~~~~G~~VLI~Gidq~i~KtaTi~~~~~ked~yiFrpl~~~t~~ 585 (971)
T KOG0468|consen 506 VRVLGENYSLEDEEDMVICEVGELWVVRARYRIPVSRAPAGLWVLIEGVDQSIVKTATIKSLEYKEDVYIFRPLKFNTEP 585 (971)
T ss_pred eeEeeccccCCCcccceeeeeeeeeeeeeeEEEEecccCCCcEEEEeccchHHhhhhheeccccccceeeccchhcCCcc
Confidence 99999999887777777789999999999999999999999999999999999999999886532 14567899998999
Q ss_pred eEEEEEEeCCCCCHhHHHHHHHHHHhcCCceEEEecCCCcEEEEecchHHHHHHHHHHHhhccCCeEEEEeCCeEeEEec
Q 003378 480 VVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRET 559 (824)
Q Consensus 480 v~~~aVep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g~GElHLei~~~rL~~~~~~~v~v~~s~p~V~yrET 559 (824)
+++++|||.+|++++||.+||++.++.+|.+....+++||++|.|.|||.|++++++||+-| +.|++++++|.|.|.||
T Consensus 586 VvKiaveP~nPsELPKmldgLrKinKsYPl~~tkVEESGEHvilGtGElYmDcvlyDLR~~y-seieikvaDPvv~F~Et 664 (971)
T KOG0468|consen 586 VVKVAVEPLNPSELPKMLDGLRKINKSYPLVITKVEESGEHVILGTGELYMDCVLYDLRKSY-SEIEIKVADPVVRFCET 664 (971)
T ss_pred eEEEEeccCChhhhhHHHHHHHhhcccCCcEEEehhhcCceEEecCchhhHHHHHHHHHHHH-hhhceeecCceeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred ccccccceeeeecCCCeeEEEEEEeeCchhhhhhhcCCcCCCCCChhhHHHhhhhhcCCchhccCeEEEeccCCCCCceE
Q 003378 560 VLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMV 639 (824)
Q Consensus 560 i~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gp~~~g~n~~ 639 (824)
+.++++..|..+++|+.|+|+|.+|||+..+.+.|++|.+......+...+.+...|+||...+++||+|||+..|+|++
T Consensus 665 ~vetssikcfaetpnkknkItmiaEPlek~l~eDiEng~v~I~wn~krl~effqt~YdWDlLAaRsiWaFgpd~~GpNiL 744 (971)
T KOG0468|consen 665 VVETSSIKCFAETPNKKNKITMIAEPLEKGLAEDIENGVVVIDWNRKRLGEFFQTKYDWDLLAARSIWAFGPDYTGPNIL 744 (971)
T ss_pred eecccchhhhccCCCccCceeeeechhhhhhhHHhhcCeEEeccchhhhhhhhhcccchhhhhhcceeccCCCCCCCcee
Confidence 99999999999999999999999999999999999998865556677777888899999999999999999999999999
Q ss_pred Eecc----cCccchHHHHHHHHHHHHHHHHcCCccCCCcceeEEEEeeeeecccccccCCCChHHHHHHHHHHHHHhcCC
Q 003378 640 VDMC----KGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKP 715 (824)
Q Consensus 640 ~~~~----~g~~~~~~~~~~i~~Gf~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~a~~~a~~ 715 (824)
+|+| ...+++..++++|.+||||++++||||+||+++|+|+|.|+.+.++..+++++|+++++|++|+.|++.|.|
T Consensus 745 ~dDTLp~evdk~ll~~vkesivQGFqW~trEGPLc~EpIr~VkfKlld~~ia~e~l~rgggQiIPtaRrv~YsafL~AtP 824 (971)
T KOG0468|consen 745 LDDTLPTEVDKNLLSSVKESIVQGFQWGTREGPLCDEPIRNVKFKLLDAVIAPEPLHRGGGQIIPTARRVAYSAFLMATP 824 (971)
T ss_pred ecCcCcchhhHHHHHHHHHHHHHHHHHHhccCCccCCcccceeEEEeecccCccccccCCCccchHHHHHHHHHHHhhch
Confidence 9988 346688899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc-----------cccchheccccccceeeeeeccCCCCceEEEEEechhhhcCchHHHhhhCCCceEeEeEeccee
Q 003378 716 RLLEP-----------ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWD 784 (824)
Q Consensus 716 ~LlEP-----------~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~ 784 (824)
+|||| ++..||.+|++|||+|....+..|++.+.|+|++|+.|||||.++||-.|+|+|.+++.|.||+
T Consensus 825 rLmEP~Y~VEi~apad~v~~Vy~vl~rRRGhV~~d~p~pGSPly~v~a~iPvieSfGFETDLR~hTqGqa~C~~vF~HW~ 904 (971)
T KOG0468|consen 825 RLMEPVYLVEITAPADCVPAVYTVLSRRRGHVTQDIPVPGSPLYTVKAYLPVIESFGFETDLRVHTQGQAFCLSVFDHWR 904 (971)
T ss_pred hhcCceEEEEEecccchHHHHHHHHHhhcCceeecCCCCCCchhheeeecccccccCcccceeeeccchhHHHHhhhhcc
Confidence 99999 7888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCC------------chHHHHHHHHHHHhcCCCCCCCCccccccc
Q 003378 785 MMSSDPLEP------------GSQASQLVLDIRKRKGLKEQMTPLSEYEDK 823 (824)
Q Consensus 785 ~v~~~~~~~------------~~~a~~~i~~~r~rkGl~~~i~~~~~~~~~ 823 (824)
+|||||+|+ +++||+++-++||||||+|+ ++..+|+|+
T Consensus 905 ~VPGDpLDKsi~i~~Lep~p~~~LaReFmiKTRRRKGlsed-vS~~kffd~ 954 (971)
T KOG0468|consen 905 IVPGDPLDKSIAIRPLEPAPIRHLAREFMIKTRRRKGLSED-VSINKFFDD 954 (971)
T ss_pred cCCCCccccccccccCCCCCcchhHHHHHHHhhhhcccccc-cccCcccch
Confidence 999999995 57899999999999999999 588888874
No 5
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.5e-126 Score=1050.82 Aligned_cols=789 Identities=37% Similarity=0.651 Sum_probs=671.0
Q ss_pred CceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccc
Q 003378 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 5 ~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (824)
.....+||+ ++|+|||||||+++|+..+|.|+.+.+|+.|++|++++||.||||++++.+++..+
T Consensus 6 ~~~irn~~~---vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~------------ 70 (887)
T KOG0467|consen 6 SEGIRNICL---VAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHK------------ 70 (887)
T ss_pred CCceeEEEE---EEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccC------------
Confidence 356679999 99999999999999999999999999999999999999999999999999997665
Q ss_pred cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCHH
Q 003378 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGE 164 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~ 164 (824)
+|.+||||+|||+||.+|+.+|.+.+|+|+++||+++|++.||..+++|++..++.+|+|||||||++.||+++|.
T Consensus 71 ----~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~ 146 (887)
T KOG0467|consen 71 ----DYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQ 146 (887)
T ss_pred ----ceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhHHHHHhcChH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCC-----------CCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHH
Q 003378 165 EAYQTFQKVIENANVIMATYEDPL-----------LGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMM 233 (824)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~ 233 (824)
++|.++-++++++|.++.+|.... ...++|.|.++||.|+|+.+||+|.+++||+.|.++.+.+...+.
T Consensus 147 ea~~~l~r~i~~vn~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~~~kl~~k~~al~ 226 (887)
T KOG0467|consen 147 EAYEHLLRVIEQVNGVIGQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFGIEQFAKFYAKKLGLKDAALL 226 (887)
T ss_pred HHHHHHHHHHHHhhhHHHHhhcchhhccchhhhhhhcceeecCCCCcEEEEEecccccccHHHHHHHHHHhcChhhhhhh
Confidence 999999999999999998753110 113679999999999999999999999999999999999999999
Q ss_pred HHhhcCcccCCCCCceeecCCCCCccchhhhHhhhchhHHHHHH-HhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHH
Q 003378 234 ERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINI-CMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKR 312 (824)
Q Consensus 234 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~-~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~ 312 (824)
+.+||++|++++++++.... ..+..+++|.+++|+|+|++|+. +.+.|.+.+++....+|+.+-.++++ .++.+
T Consensus 227 k~lwgd~y~~~ktk~I~~~~-~~~grkplf~~~vle~lw~iy~~~~~~~d~~~~~ki~k~l~i~~l~r~~~----~ll~~ 301 (887)
T KOG0467|consen 227 KFLWGDRYIDPKTKRICEGK-KLKGRKPLFVQFVLENLWRIYELALKSRDKEKLEKIAKSLNIKLLPRDLR----NLLDA 301 (887)
T ss_pred hhhccceeecchhhhhhccc-CcccCCCccceeehhhHHHHHHHHhccchHHHHHHHhhhcccccchHHHH----HHHHH
Confidence 99999999999887665433 22344899999999999999995 56668899999999999999998886 78999
Q ss_pred HHhhhccchHHHHHHHHhcCCCchhhhhhhhccccCCCC---cccccccccccCCCCCeEEEEEEeeecCCCC----cce
Q 003378 313 VMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPL---DDAYANAIRNCDPEGPLMLYVSKMIPASDKG----RFF 385 (824)
Q Consensus 313 i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g----~~l 385 (824)
+|++|+|+.++.+-+++..+|+|.+.+..+...+...+. +.+...+++.|++++|.++||+|+...+.+. .++
T Consensus 302 im~~wLPls~avll~a~~~lp~pl~~~~~r~~rl~~s~~~~~~~~~~~~v~~~~~~~pviv~Vskm~~~~~k~lp~~~l~ 381 (887)
T KOG0467|consen 302 IMSTWLPLSDAVLLTVVYKLPDPIRSQAERGLRLLSSSDHRSDPPLTKAVKSCSKESPVLVFVSKMLATPLKYLPQSRLL 381 (887)
T ss_pred HHHhhcccccchHHHHHHhcCCHHHHHHHhhceeccCcccccChHhhhhhhcCCCCCcEEEEEEeeeccchhhCchhhhe
Confidence 999999999999999999999999999888877654321 1233456777999999999999998765443 258
Q ss_pred eEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccccccccceeeecCCCC
Q 003378 386 AFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEV 465 (824)
Q Consensus 386 ~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~~~~~~tgTl~~~~~~ 465 (824)
+|+||||||++.|+.+|+.++ .+...+.+...+|.++|+++|++..+.+++++|++++|.| ...+.+++|||+...
T Consensus 382 ~~ari~sgTlr~g~~v~v~~p--d~~~~e~i~~~~ie~lyl~mgqelv~~d~v~~gnv~~I~g-~~~vlks~TL~s~~~- 457 (887)
T KOG0467|consen 382 AFARIFSGTLRVGQVVYVLGP--DPLSPEHITECTVESLYLFMGQELVPLDEVPSGNVVAIGG-AGIVLKSATLCSKVP- 457 (887)
T ss_pred eeeeeccCceeeccEeeecCC--CCCCcceeeeeeehhhHHhhcccceeeeccCCCcEEEecc-cceEeccceecccCC-
Confidence 999999999999999999887 3333334557899999999999999999999999999999 777778889999754
Q ss_pred CccccccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCceEEEecCCCcEEEEecchHHHHHHHHHHHhhccCCe
Q 003378 466 DAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGA 545 (824)
Q Consensus 466 ~~~~~~~~~~~~~Pv~~~aVep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g~GElHLei~~~rL~~~~~~~v 545 (824)
+.++....|..+|+++++|+|.+|.++++|.++|+.|++.||++++..+++||+++.+.||+|||.|+.+|+. | +++
T Consensus 458 -~~p~~~~~f~~tp~vrvaiep~~p~em~~L~~glkll~~adp~v~i~v~~~gEhvl~~aGevhlerc~kDL~e-f-a~i 534 (887)
T KOG0467|consen 458 -CGPNLVVNFQITPIVRVAIEPDDPDEMDKLVEGLKLLNQADPFVKIRVEENGEHVLVTAGEVHLERCLKDLKE-F-AKI 534 (887)
T ss_pred -CcceeeeeeeeeeEEEEEeecCChHHhHHHHHHHHhhcccchhhHHHHhhccceeeeeccHHHHHHHHHHHhh-h-hce
Confidence 4444446777799999999999999999999999999999999999999999999999999999999999999 8 899
Q ss_pred EEEEeCCeEeEEecccccccce-------eeeecCCCeeEEEEEEeeCchhhhhhhcCCcCC------------CCC---
Q 003378 546 EIIKSDPVVSFRETVLEKSCRT-------VMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIG------------PRD--- 603 (824)
Q Consensus 546 ~v~~s~p~V~yrETi~~~~~~~-------~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~------------~~~--- 603 (824)
++++++|.|+||||+.+.+... .....+.+.-++.+++.|+...+.+.+..+... +.+
T Consensus 535 ~i~vSeP~vpfrET~~e~s~l~~~~~I~~~~~~~~~~~~ki~~~~~pl~~~~v~~l~~~~~ti~~i~~~~~~~~~i~e~~ 614 (887)
T KOG0467|consen 535 EISVSEPLVPFRETIIEDSDLLANLSIGQETKCLPRGQLKIKLRVVPLSGAVVDLLDKNSSLISNILRGESRQVPIDESQ 614 (887)
T ss_pred EEEecCCccchhhhccccchhhhhhhcCcccccccccceeEEeeecccccceeccccccchhccchhccccccccccccc
Confidence 9999999999999996654321 000112222356777888764433332211110 000
Q ss_pred -----ChhhHHHhhhhhcCCc------hhccCeEEEeccCCCCCceEEecccC--------ccchHHHHHHHHHHHHHHH
Q 003378 604 -----DPKVRSKILSEEFGWD------KDLAKKIWCFGPETIGPNMVVDMCKG--------VQYLNEIKDSVVAGFQWAS 664 (824)
Q Consensus 604 -----~~~~~~~~~~~~~~~~------~~~~~~v~~~gp~~~g~n~~~~~~~g--------~~~~~~~~~~i~~Gf~~a~ 664 (824)
+.......+...+... .....++|+|||.+.|+|+|++.... ..+...+-+++..|||.++
T Consensus 615 k~~~~e~ls~~~s~~~~~~~ek~~e~~~~~~~~~~Afgp~r~g~nilf~~~~~~~~s~~~~t~~~~~l~~~ivsgfql~~ 694 (887)
T KOG0467|consen 615 KGSFEENLSLLISLERLYEFEKPREKLGSFKDQIIAFGPRRVGPNILFNKDSKLYRSVRRGTPFVARLSESIVSGFQLAT 694 (887)
T ss_pred cccccccccHHHHHHHHhhccccHHHHHHHHhhhhcccccccCCceeeccccchhhhhhhcchHHHHHHHHHhhhHhhhh
Confidence 0000011111221111 11234688999999999999986532 2223336789999999999
Q ss_pred HcCCccCCCcceeEEEEeeeeecc-cccccCCCChHHHHHHHHHHHHHhcCCccccc-----------cccchheccccc
Q 003378 665 KEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQLTAKPRLLEP-----------ALGGIYSVLNQK 732 (824)
Q Consensus 665 ~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~~a~~~a~~~LlEP-----------~~g~v~~~L~~R 732 (824)
.+||||.||++|++|.+..+.... ++...-.||+++|++.+||+|++...|||+.| ++|+||++|++|
T Consensus 695 ~sGPlc~Ep~~g~~~~~es~~~e~~e~~~~~~GQviTa~Kescr~Afl~~~pRl~~aMYsC~I~t~~e~LGkvYAVlskR 774 (887)
T KOG0467|consen 695 SSGPLCNEPMQGICFVLESGSAEEMESDGNIGGQLITAVKDSCRAAFLCWSPRIMAAMYSCDIQTASEVLGKVYAVLSKR 774 (887)
T ss_pred ccCcccccCcccEEEEeeccCcccccccCCcCceeHHHHHHHHHHHHhcCCHHHhhhheeeeeeehHHHhhhHHhhhhhh
Confidence 999999999999999999865443 23222338999999999999999999999999 999999999999
Q ss_pred cceeeeeeccCCCCceEEEEEechhhhcCchHHHhhhCCCceEeEeEecceeecCCCCCCC----------------chH
Q 003378 733 RGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEP----------------GSQ 796 (824)
Q Consensus 733 Rg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~~~----------------~~~ 796 (824)
+|+|+++++++||+.|.|+|.+|+.|+|||+.++|..|||.|++++.|+|||.++.||||. +|+
T Consensus 775 ~gkVLsEem~EgT~~F~V~aliPVvESFgFadeiRK~TSG~A~pQLvFShwEvId~DPFWvPtTEEEleefGekADs~N~ 854 (887)
T KOG0467|consen 775 HGKVLSEEMKEGTGFFIVTALIPVVESFGFADEIRKGTSGAASPQLVFSHWEVIDEDPFWVPTTEEELEEFGEKADSENI 854 (887)
T ss_pred cchhhhhhhhCCCCcEEEEEEeeeeccccHHHHHhhccccccchhhhccccEEecCCCccCCCcHHHHHHhhhcccchhH
Confidence 9999999999999999999999999999999999999999999999999999999999983 689
Q ss_pred HHHHHHHHHHhcCC--CCCCCCcccccccC
Q 003378 797 ASQLVLDIRKRKGL--KEQMTPLSEYEDKL 824 (824)
Q Consensus 797 a~~~i~~~r~rkGl--~~~i~~~~~~~~~~ 824 (824)
|++||+++|||||| +|+||+++|||++|
T Consensus 855 ArkYMdaVRRRKGLfVEEkIVE~AEKQRTL 884 (887)
T KOG0467|consen 855 ARKYMDAVRRRKGLFVEEKIVEHAEKQRTL 884 (887)
T ss_pred HHHHHHHHHhhcCCchHHHHhhhHHhhccc
Confidence 99999999999999 99999999999987
No 6
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=9.8e-123 Score=1107.66 Aligned_cols=697 Identities=42% Similarity=0.693 Sum_probs=610.6
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+-.+|++ +||+|||||||+++|++.+|.+++...|.++++|+.++|++|||||+++.+++.|..
T Consensus 18 ~~iRni~i---igh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~------------ 82 (731)
T PRK07560 18 EQIRNIGI---IAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEY------------ 82 (731)
T ss_pred hcccEEEE---EEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEe------------
Confidence 45578999 999999999999999999999988767778899999999999999999999998852
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCHHH
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 165 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~ 165 (824)
+++++.|||||||||.||..++.++++.+|+||+|||+.+|++.||+.+|+++.+.++|+|+|+||||+.+.+++.++++
T Consensus 83 ~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~~~~~~~~~ 162 (731)
T PRK07560 83 EGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIKELKLTPQE 162 (731)
T ss_pred cCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcccccCCHHH
Confidence 23578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCC-CCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcccCC
Q 003378 166 AYQTFQKVIENANVIMATYEDPLL-GDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 244 (824)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~~~ 244 (824)
+++++.+++++++.++..|..+.. +.+.+.|..++|.|+|++++|+|.++.+.... .
T Consensus 163 ~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~-----~----------------- 220 (731)
T PRK07560 163 MQQRLLKIIKDVNKLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTG-----I----------------- 220 (731)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhC-----C-----------------
Confidence 999999999999988876643321 23457788899999999999999876432111 0
Q ss_pred CCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhhhccchHHH
Q 003378 245 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSAL 324 (824)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~L 324 (824)
.| +++++.|+++ +.+++ .+|+|+.+.|
T Consensus 221 -----------------~~-------------------~~l~e~~~~~-----~~~~l------------~~~~Pv~~~L 247 (731)
T PRK07560 221 -----------------KF-------------------KDIIDYYEKG-----KQKEL------------AEKAPLHEVV 247 (731)
T ss_pred -----------------CH-------------------HHHHHHHhcC-----CHHHH------------HhhccchhHH
Confidence 01 1122223111 11221 3579999999
Q ss_pred HHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEEc
Q 003378 325 LEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIM 404 (824)
Q Consensus 325 Ld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~ 404 (824)
||+|++|+|||.++++++...++.+....+..+..+.|++++|++|+|||+..+++.|. ++|+|||||+|++||.|++.
T Consensus 248 ld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~-va~~RV~sGtL~~Gd~v~~~ 326 (731)
T PRK07560 248 LDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGE-VATGRVFSGTLRKGQEVYLV 326 (731)
T ss_pred HHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCe-EEEEEEEEeEEcCCCEEEEc
Confidence 99999999999998888777777654333334566789999999999999999998886 99999999999999999975
Q ss_pred CCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCCCccccccccccCCceEEE
Q 003378 405 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRV 483 (824)
Q Consensus 405 ~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~ 483 (824)
+. +.+ ++|++|+.++|++..++++|.|||||+|.|+++. .+| ||++... ..+++++.+.++|++++
T Consensus 327 ~~----~~~-----~~v~~i~~~~g~~~~~v~~a~AGdIv~i~gl~~~--~~GdtL~~~~~--~~~~~~~~~~p~Pv~~~ 393 (731)
T PRK07560 327 GA----KKK-----NRVQQVGIYMGPEREEVEEIPAGNIAAVTGLKDA--RAGETVVSVED--MTPFESLKHISEPVVTV 393 (731)
T ss_pred CC----CCc-----eEeheehhhhcCCCceeeeECCCCEEEEEccccc--ccCCEEeCCCc--cccccccccCCCCeEEE
Confidence 42 333 7999999999999999999999999999999887 577 9988765 56677775445999999
Q ss_pred EEEeCCCCCHhHHHHHHHHHHhcCCceEEEec-CCCcEEEEecchHHHHHHHHHHHhhccCCeEEEEeCCeEeEEecccc
Q 003378 484 AVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLE 562 (824)
Q Consensus 484 aVep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~il~g~GElHLei~~~rL~~~~~~~v~v~~s~p~V~yrETi~~ 562 (824)
+|+|.++.|++||.+||++|++|||+|+|..+ +|||++|+||||+|||++++||+++| ++++++++|+|+|||||.+
T Consensus 394 aI~p~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~~l~g~GElHLei~~~rL~~~~--~vev~~~~p~V~yrETI~~ 471 (731)
T PRK07560 394 AIEAKNPKDLPKLIEVLRQLAKEDPTLVVKINEETGEHLLSGMGELHLEVITYRIKRDY--GIEVVTSEPIVVYRETVRG 471 (731)
T ss_pred EEEECCHHHHHHHHHHHHHHHhhCCcEEEEEcCCCCCeEEEcCCHHHHHHHHHHHHHHh--CCceEecCCEEEEEEeccc
Confidence 99999999999999999999999999999997 89999999999999999999999999 9999999999999999998
Q ss_pred cccceeeeecCCCeeEEEEEEeeCchhhhhhhcCCcCCCCCChhhHHHhhhh---hcCCchhccCeEEEeccCCCCCceE
Q 003378 563 KSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSE---EFGWDKDLAKKIWCFGPETIGPNMV 639 (824)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~gp~~~g~n~~ 639 (824)
++. .+...++++|++++++++|+|.+..+.++.|.+...++.+.+ ..+.. +|||+...++++|+|+ ++|+|
T Consensus 472 ~~~-~~~~~~~~~~~~v~l~iePl~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~~~~~i~~~~----~~~~f 545 (731)
T PRK07560 472 KSQ-VVEGKSPNKHNRFYISVEPLEEEVIEAIKEGEISEDMDKKEA-KILREKLIEAGMDKDEAKRVWAIY----NGNVF 545 (731)
T ss_pred Ccc-ceEEECCCCceEEEEEEEECCHHHHHHHhcCCcccccchHHH-HHHHHhhhhcCCchhhhhceeecc----CCeEE
Confidence 863 123456788999999999999988888888876544444444 44444 8999999999999994 57999
Q ss_pred EecccCccchHHHHHHHHHHHHHHHHcCCccCCCcceeEEEEeeeeecccccccCCCChHHHHHHHHHHHHHhcCCcccc
Q 003378 640 VDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLE 719 (824)
Q Consensus 640 ~~~~~g~~~~~~~~~~i~~Gf~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~a~~~a~~~LlE 719 (824)
+|.+.|+.++++++++|++||+|||++|||||+||+||+|+|+|+++|.|+.++..+||++|+++||++|+++|+|+|||
T Consensus 546 ~~~~~gg~~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~d~~~~~~~~~~~a~~~a~~~a~~~a~p~LlE 625 (731)
T PRK07560 546 IDMTKGIQYLNEVMELIIEGFREAMKEGPLAAEPVRGVKVRLHDAKLHEDAIHRGPAQVIPAVRNAIFAAMLTAKPTLLE 625 (731)
T ss_pred EECCCCccCHHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEEeeecccccccccchHHHHHHHHHHHHHHhCCCEEee
Confidence 99999999999999999999999999999999999999999999999988888888999999999999999999999999
Q ss_pred c-----------cccchheccccccceeeeeeccCCCCceEEEEEechhhhcCchHHHhhhCCCceEeEeEecceeecCC
Q 003378 720 P-----------ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSS 788 (824)
Q Consensus 720 P-----------~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~ 788 (824)
| ++|+||++|++|||+|++++..+ ++++|+|++|++|||||+++|||+|+|+|+|+|+|+||++||+
T Consensus 626 Pi~~veI~~p~~~~g~v~~~L~~rrg~i~~~~~~~--~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~ 703 (731)
T PRK07560 626 PIQKVDINVPQDYMGAVTREIQGRRGKILDMEQEG--DMAIIEAEAPVAEMFGFAGEIRSATEGRALWSTEFAGFEPVPD 703 (731)
T ss_pred cEEEEEEEecHHHhhHHHHHHHhcCCeeeeeecCC--CcEEEEEEEehHHhcCCchHHHhhCcCCceEEEEeccceeCCH
Confidence 9 99999999999999999987643 5799999999999999999999999999999999999999997
Q ss_pred CCCCCchHHHHHHHHHHHhcCCCCCCCCcccccc
Q 003378 789 DPLEPGSQASQLVLDIRKRKGLKEQMTPLSEYED 822 (824)
Q Consensus 789 ~~~~~~~~a~~~i~~~r~rkGl~~~i~~~~~~~~ 822 (824)
+ +|+++|+++||||||+++||.+++|+|
T Consensus 704 ~------~~~~ii~~~r~rKGl~~~~~~~~~~~~ 731 (731)
T PRK07560 704 S------LQLDIVRQIRERKGLKPELPKPEDFLS 731 (731)
T ss_pred H------HHHHHHHHHHhhCCCCCCCCChhhhcC
Confidence 5 599999999999999999999999986
No 7
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-122 Score=1071.41 Aligned_cols=655 Identities=35% Similarity=0.517 Sum_probs=554.7
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCcee----ecCChhhHhHhccceeeceEEEEEeechhhhhcc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVR----MTDTRQDEAERGITIKSTGISLYYEMTDAALKSY 81 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~----~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~ 81 (824)
.+..||+| +||+|||||||+++||+++|.+++ .|+++ +||++++||+|||||+++.+++.|+
T Consensus 8 ~~~RNigI---~aHidaGKTTltE~lL~~tG~i~k--~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~--------- 73 (697)
T COG0480 8 ERIRNIGI---VAHIDAGKTTLTERILFYTGIISK--IGEVHDGAATMDWMEQEQERGITITSAATTLFWK--------- 73 (697)
T ss_pred ccceEEEE---EeccCCChHHHHHHHHHHcCCcCC--CccccCCCccCCCcHHHHhcCCEEeeeeeEEEEc---------
Confidence 46689999 999999999999999999999998 78766 9999999999999999999999997
Q ss_pred ccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccC
Q 003378 82 RGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQV 161 (824)
Q Consensus 82 ~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~ 161 (824)
.+++|||||||||+||..|+.+++|++|+||+||||++|+++||+++|+||.++++|+|+|+|||||. ++
T Consensus 74 ------~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~----~a 143 (697)
T COG0480 74 ------GDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRL----GA 143 (697)
T ss_pred ------CceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECcccc----cc
Confidence 14999999999999999999999999999999999999999999999999999999999999999999 66
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccC--ccceeeehhhHHHHhhhhcCCChHHHHHHhhcC
Q 003378 162 DGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAG--LHGWAFTLTNFAKMYASKFGVDESKMMERLWGE 239 (824)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~--~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~ 239 (824)
+...+. +++...+.. .|..-++|+++. +.|| +|+..+..+.|++
T Consensus 144 ~~~~~~-------~~l~~~l~~-----------~~~~v~~pIg~~~~f~g~----------------idl~~~~~~~~~~ 189 (697)
T COG0480 144 DFYLVV-------EQLKERLGA-----------NPVPVQLPIGAEEEFEGV----------------IDLVEMKAVAFGD 189 (697)
T ss_pred ChhhhH-------HHHHHHhCC-----------CceeeeccccCccccCce----------------eEhhhcCeEEEcC
Confidence 533322 222222211 122225555542 2333 5666777777763
Q ss_pred cccCCCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-hhhc
Q 003378 240 NFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWL 318 (824)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~ 318 (824)
.....|...| ....+...+.+.++++++++.|++++++||++ .+++.+++. ++|++.++ ..++
T Consensus 190 ----~~~~~~~~ip-------~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g--~e~~~~~i~---~~i~~~~~~~~~~ 253 (697)
T COG0480 190 ----GAKYEWIEIP-------ADLKEIAEEAREKLLEALAEFDEELMEKYLEG--EEPTEEEIK---KALRKGTIAGKIV 253 (697)
T ss_pred ----CcccceeeCC-------HHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcC--CCccHHHHH---HHHHHhhhcccee
Confidence 1111232222 22333334566789999999999999999998 778888887 35555544 3566
Q ss_pred cc----------hHHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccc-cccCCCCCeEEEEEEeeecCCCCcceeE
Q 003378 319 PA----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAI-RNCDPEGPLMLYVSKMIPASDKGRFFAF 387 (824)
Q Consensus 319 P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~p~va~VfK~~~~~~~g~~l~~ 387 (824)
|+ ++.|||+|++|||+|.+.+.+ .|..+++....+ ..+++++|++|+|||+..+++.|. ++|
T Consensus 254 pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~------~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g~-l~~ 326 (697)
T COG0480 254 PVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPI------KGDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFVGK-LTF 326 (697)
T ss_pred eEEeeecccCCcHHHHHHHHHHHCCChhhcccc------cccCCccccchhcccCCCCCceEEEEEEeEecCCCCe-EEE
Confidence 64 899999999999999998743 333222222222 244568999999999999999887 999
Q ss_pred EEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCCC
Q 003378 388 GRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVD 466 (824)
Q Consensus 388 ~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~~ 466 (824)
+|||||+|++|+.+++. +.+++ +||.+|+.++|.+++++++++||||+++.||+++ .|| |+|+.+.
T Consensus 327 ~RvysGtl~~G~~v~n~----~~~~~-----erv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl~~~--~tGdTl~~~~~-- 393 (697)
T COG0480 327 VRVYSGTLKSGSEVLNS----TKGKK-----ERVGRLLLMHGNEREEVDEVPAGDIVALVGLKDA--TTGDTLCDENK-- 393 (697)
T ss_pred EEEeccEEcCCCEEEeC----CCCcc-----EEEEEEEEccCCceeecccccCccEEEEEccccc--ccCCeeecCCC--
Confidence 99999999999999953 33333 8999999999999999999999999999999997 788 9998774
Q ss_pred ccccccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCceEEEec-CCCcEEEEecchHHHHHHHHHHHhhccCCe
Q 003378 467 AHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGA 545 (824)
Q Consensus 467 ~~~~~~~~~~~~Pv~~~aVep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~il~g~GElHLei~~~rL~~~~~~~v 545 (824)
+..+..+.++ +|+++++|+|++++|++||.+||++|++|||+++++.| ||||++|+|||||||||+++||+++| +|
T Consensus 394 ~v~~~~~~~p-ePVi~vavepk~~~d~~Kl~~aL~~l~~eDPt~~v~~d~Etge~iIsGmGELHLei~~drl~~~~--~V 470 (697)
T COG0480 394 PVILESMEFP-EPVISVAVEPKTKADQEKLSEALNKLAEEDPTFRVETDEETGETIISGMGELHLEIIVDRLKREF--GV 470 (697)
T ss_pred ccccccccCC-CceEEEEEeECChhhHHHHHHHHHHHHhhCCceEEEEcCCcccEEEEecchhhHHHHHHHHHhhc--Cc
Confidence 6788999998 99999999999999999999999999999999999997 99999999999999999999999999 99
Q ss_pred EEEEeCCeEeEEeccccccccee----eeecCCCeeEEEEEEeeCchhhhhhhcCCcCCCCCChhhHHHhhhhhcCCchh
Q 003378 546 EIIKSDPVVSFRETVLEKSCRTV----MSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKD 621 (824)
Q Consensus 546 ~v~~s~p~V~yrETi~~~~~~~~----~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~ 621 (824)
++++++|+|+|||||.+.+.... .++++++|+++++++||++.+.
T Consensus 471 ev~~~~PqV~YrETi~~~~~~~~~~~kqsgg~~q~~~v~i~~EP~~~~~------------------------------- 519 (697)
T COG0480 471 EVEVGKPQVAYRETIRKKSEVEGKHKKQSGGPGQYGHVYIEIEPLEDGS------------------------------- 519 (697)
T ss_pred eEEecCCeeEEEEeecccccceeeeeeccCCCCcccEEEEEEEeCCCCc-------------------------------
Confidence 99999999999999998865321 1456788888888888876431
Q ss_pred ccCeEEEeccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCcceeEEEEeeeeecccccccCCCChHHH
Q 003378 622 LAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPT 701 (824)
Q Consensus 622 ~~~~v~~~gp~~~g~n~~~~~~~g~~~~~~~~~~i~~Gf~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a 701 (824)
.+.|.+.+.|+.+++++++++++||++|+++|||+||||+||+|+|.|+++|.+. +...+|..|
T Consensus 520 --------------~~~f~~~i~~g~~P~~yi~~ve~G~~~a~~~GpLag~pv~dvkv~L~dgs~h~vd--ss~~af~~a 583 (697)
T COG0480 520 --------------GFEFVDKIVGGVVPKEYIPAVEKGFREALKSGPLAGYPVVDVKVTLLDGSYHEVD--SSEMAFKIA 583 (697)
T ss_pred --------------ceEEEeecccCcCchhhhHHHHHHHHHHHhcCCCCCCceEeeEEEEEcCccccCC--CCHHHHHHH
Confidence 3667777788888999999999999999999999999999999999999999732 334567899
Q ss_pred HHHHHHHHHHhcCCccccc-----------cccchheccccccceeeeeeccCCCCceEEEEEechhhhcCchHHHhhhC
Q 003378 702 ARRVIYASQLTAKPRLLEP-----------ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAAT 770 (824)
Q Consensus 702 ~~~a~~~a~~~a~~~LlEP-----------~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T 770 (824)
+++||++|+++|+|+|||| ++|+|+++|++|||+|++++..+++.++.|+|++|++|||||+++|||+|
T Consensus 584 ~~~a~~~a~~~a~P~lLEPi~~veI~~P~d~~G~V~~~l~~rRG~I~~~~~~~~~~~~~i~A~vPl~Emfgya~dLRs~T 663 (697)
T COG0480 584 ASLAFKEAMLKAKPVLLEPIMKVEITTPEEYMGDVIGDLNSRRGQILGMEQRPGGGLDVIKAEVPLAEMFGYATDLRSAT 663 (697)
T ss_pred HHHHHHHHHhhCCceEecceEEEEEEcchhhhchhHHhhhhcceEEeceeeccCCceEEEEEEechHHhccchhhhHhhc
Confidence 9999999999999999999 99999999999999999999986667899999999999999999999999
Q ss_pred CCceEeEeEecceeecCCCCCCCchHHHHHHHHHHHhcCC
Q 003378 771 SGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGL 810 (824)
Q Consensus 771 ~G~~~~~~~f~~y~~v~~~~~~~~~~a~~~i~~~r~rkGl 810 (824)
+|+|+|+|+|+||+++|. |+|++|+.+.|+|||+
T Consensus 664 ~Gra~~~m~f~~y~~vp~------~~a~~ii~~~~~~~~~ 697 (697)
T COG0480 664 QGRASFSMEFDHYEEVPS------SVAEEIIAKRRKRKGL 697 (697)
T ss_pred CCceeEEEEecccEeCCH------HHHHHHHHHhhhhcCC
Confidence 999999999999999996 4699999999999986
No 8
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=100.00 E-value=3.2e-117 Score=1057.18 Aligned_cols=689 Identities=39% Similarity=0.655 Sum_probs=593.4
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
....||++ +||+|||||||+++|++.+|.+++...|..+++|+.++|++||+|+.++..++.|. .
T Consensus 17 ~~irnI~i---vGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~------------~ 81 (720)
T TIGR00490 17 KFIRNIGI---VAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHE------------Y 81 (720)
T ss_pred ccccEEEE---EEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEe------------e
Confidence 45679999 99999999999999999999998876777789999999999999999998876553 2
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCHHH
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 165 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~ 165 (824)
+++++++||||||||.+|..++..+++.+|+||+|+|+.+|+..+|+.+|+++...++|+++|+||||+...+++..+++
T Consensus 82 ~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~ 161 (720)
T TIGR00490 82 EGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQE 161 (720)
T ss_pred cCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHHH
Confidence 33589999999999999999999999999999999999999999999999999999999999999999998888889999
Q ss_pred HHHHHHHHHHHhhhhhhhccCC-CCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcccCC
Q 003378 166 AYQTFQKVIENANVIMATYEDP-LLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 244 (824)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~~~ 244 (824)
+++++.+++..++..+..+..+ ..+.+.+.|..+++.|+|+..+|+|++++|.... ++.
T Consensus 162 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~-----~~~--------------- 221 (720)
T TIGR00490 162 LQERFIKIITEVNKLIKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTG-----IGF--------------- 221 (720)
T ss_pred HHHHHhhhhHHHHhhhhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcC-----CCH---------------
Confidence 9999999999999887543211 1123456788889999999999999887541110 100
Q ss_pred CCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhhhccchHHH
Q 003378 245 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSAL 324 (824)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~L 324 (824)
++ |.++++. .. .++ +.+|+|++++|
T Consensus 222 ---------------------------~~------------l~~~~~~--~~--~~~------------~~~~~Pv~~~L 246 (720)
T TIGR00490 222 ---------------------------KD------------IYKYCKE--DK--QKE------------LAKKSPLHQVV 246 (720)
T ss_pred ---------------------------HH------------HHHHHHh--cc--HHH------------HhhhhhHHHHH
Confidence 11 2233322 00 111 12589999999
Q ss_pred HHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEEc
Q 003378 325 LEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIM 404 (824)
Q Consensus 325 Ld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~ 404 (824)
||+|++|+|||.+++.+++..++.++.+.+.......|++++|++|+|||+..+++.|. ++|+|||||+|++||.|++.
T Consensus 247 ld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~-ia~~RV~sGtL~~G~~l~~~ 325 (720)
T TIGR00490 247 LDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGE-VAVGRLYSGTIRPGMEVYIV 325 (720)
T ss_pred HHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcE-EEEEEEEeCEEcCCCEEEEc
Confidence 99999999999988877777666553233333467789999999999999999888887 99999999999999999975
Q ss_pred CCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCCCccccccccccCCceEEE
Q 003378 405 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRV 483 (824)
Q Consensus 405 ~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~ 483 (824)
++ +.+ ++|++|+.++|.+.+++++|.|||||+|.|++++ .+| |||+.... ..+++++.+.++|++++
T Consensus 326 ~~----~~~-----~kv~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~--~~GdtL~~~~~~-~~~~~~~~~~~~Pv~~~ 393 (720)
T TIGR00490 326 DR----KAK-----ARIQQVGVYMGPERVEVDEIPAGNIVAVIGLKDA--VAGETICTTVEN-ITPFESIKHISEPVVTV 393 (720)
T ss_pred CC----CCe-----eEeeEEEEeccCCccCccEECCCCEEEEECcccc--ccCceeecCCcc-cccCcccccCCCceEEE
Confidence 43 333 7999999999999999999999999999999887 567 99876531 34456665445999999
Q ss_pred EEEeCCCCCHhHHHHHHHHHHhcCCceEEEec-CCCcEEEEecchHHHHHHHHHHHhhccCCeEEEEeCCeEeEEecccc
Q 003378 484 AVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLE 562 (824)
Q Consensus 484 aVep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~il~g~GElHLei~~~rL~~~~~~~v~v~~s~p~V~yrETi~~ 562 (824)
+|+|+++.|+++|.++|++|++|||+|+|..+ +|||++|+||||+|||+|++||+++| ++++.+++|+|+|||||.+
T Consensus 394 ~i~p~~~~d~~kL~~aL~~L~~eDPsl~v~~d~etge~il~g~GElHLei~~~rL~~~~--~vev~~~~P~V~YrETi~~ 471 (720)
T TIGR00490 394 AIEAKNTKDLPKLIEVLRQVAKEDPTVHVEINEETGEHLISGMGELHLEIIVEKIREDY--GLDVETSPPIVVYRETVTG 471 (720)
T ss_pred EEEECCHHHHHHHHHHHHHHHhhCCeEEEEECCCCCCeEEEEccceeHHHHHHHHHHHh--CCceeecCCEEEEEEeccc
Confidence 99999999999999999999999999999997 89999999999999999999999999 9999999999999999998
Q ss_pred cccceeeeecCCCeeEEEEEEeeCchhhhhhhcCCcCCCC-CChhhHHHhhhhhcCCchhccCeEEEeccCCCCCceEEe
Q 003378 563 KSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPR-DDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVD 641 (824)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~gp~~~g~n~~~~ 641 (824)
.++. .....+++|++++++++|++.++.+.|++|.+... ...+.+...+ ..|||+..+++++|+|+ ++|+|+|
T Consensus 472 ~~~~-~~~~~~~~~~~v~l~iePl~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~----~~~~f~~ 545 (720)
T TIGR00490 472 TSPV-VEGKSPNKHNRFYIVVEPLEESVIQAFKEGKIVDMKMKKKERRRLL-IEAGMDSEEAARVEEYY----EGNLFIN 545 (720)
T ss_pred cccc-eEEEcCCCcEEEEEEEEECCcchhhhhhcccccccccchHHHHHHH-HhcCCchhhhcCEEEec----CCeEEEE
Confidence 8652 12334678999999999999998889988876432 3445555666 46999999999999997 4799999
Q ss_pred cccCccchHHHHHHHHHHHHHHHHcCCccCCCcceeEEEEeeeeecccccccCCCChHHHHHHHHHHHHHhcCCccccc-
Q 003378 642 MCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEP- 720 (824)
Q Consensus 642 ~~~g~~~~~~~~~~i~~Gf~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~a~~~a~~~LlEP- 720 (824)
.+.|+.++++|++||++||+||+++||||||||+||+|+|+|+++|.|+.++..++|++|+++||++|+++|+|+||||
T Consensus 546 ~~~gg~i~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~~vds~~~~f~~a~~~a~~~a~~~a~p~LlEPi 625 (720)
T TIGR00490 546 MTRGIQYLDETKELILEGFREAMRNGPIAREKCMGVKVKLMDAKLHEDAVHRGPAQVIPAVRSGIFAAMMQAKPVLLEPY 625 (720)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCcCCCcccceEEEEEeeccccccccCccchHHHHHHHHHHHHHHhCCCeEecce
Confidence 9999999999999999999999999999999999999999999999877777788999999999999999999999999
Q ss_pred ----------cccchheccccccceeeeeeccCCCCceEEEEEechhhhcCchHHHhhhCCCceEeEeEecceeecCCCC
Q 003378 721 ----------ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDP 790 (824)
Q Consensus 721 ----------~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~ 790 (824)
++|+|+++|++|||+|++++..+ +.++|+|++|++|||||+++|||+|+|+|+|+|+|+||+++|++
T Consensus 626 ~~~ei~~p~~~~g~v~~~L~~RRg~i~~~~~~~--~~~~I~A~vP~~e~fgy~~~Lrs~T~G~a~~~~~f~~y~~vp~~- 702 (720)
T TIGR00490 626 QKVFINVPQDMMGAATREIQNRRGQILEMKQEG--DMVTIIAKAPVAEMFGFAGAIRGATSGRCLWSTEHAGFELVPQN- 702 (720)
T ss_pred EEEEEEccHHHHhHHHHHHhhCCceeeeeccCC--CcEEEEEEEehHHhcCCcHHHHhhCCCCceEEEEecccccCCHH-
Confidence 99999999999999999886532 57999999999999999999999999999999999999999976
Q ss_pred CCCchHHHHHHHHHHHhcCCCCC
Q 003378 791 LEPGSQASQLVLDIRKRKGLKEQ 813 (824)
Q Consensus 791 ~~~~~~a~~~i~~~r~rkGl~~~ 813 (824)
++++++.++||||||+|+
T Consensus 703 -----~~~~ii~~~r~rkgl~~~ 720 (720)
T TIGR00490 703 -----LQQEFVMEVRKRKGLKLE 720 (720)
T ss_pred -----HHHHHHHHHHhhcCCCCC
Confidence 599999999999999875
No 9
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.7e-119 Score=976.89 Aligned_cols=648 Identities=25% Similarity=0.384 Sum_probs=551.8
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccc--cCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccc
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~--~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (824)
+..+|+| ++|.|+|||||++++||++|.+... ..|....||+.+.||+|||||++++..+.|.
T Consensus 38 k~RNIgi---~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~------------ 102 (721)
T KOG0465|consen 38 KIRNIGI---SAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWR------------ 102 (721)
T ss_pred hhcccce---EEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeec------------
Confidence 4568888 9999999999999999999987662 1222468999999999999999999999997
Q ss_pred cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCHH
Q 003378 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGE 164 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~ 164 (824)
+++||+||||||+||..||++|+|+.||||+|+|++.||+.||..+|+|+.++++|.|.|||||||. ++++.
T Consensus 103 ----~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRm----Ga~~~ 174 (721)
T KOG0465|consen 103 ----DYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRM----GASPF 174 (721)
T ss_pred ----cceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhc----CCChH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 99966
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcC--CChHHHHHHhhcCccc
Q 003378 165 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFG--VDESKMMERLWGENFF 242 (824)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~--id~~~l~~~l~~~~~~ 242 (824)
.+..++ +..+.. .|...++|+++. .+|. +|+...++.+|...
T Consensus 175 ~~l~~i-------~~kl~~-----------~~a~vqiPig~e----------------~~f~GvvDlv~~kai~~~g~-- 218 (721)
T KOG0465|consen 175 RTLNQI-------RTKLNH-----------KPAVVQIPIGSE----------------SNFKGVVDLVNGKAIYWDGE-- 218 (721)
T ss_pred HHHHHH-------HhhcCC-----------chheeEcccccc----------------ccchhHHhhhhceEEEEcCC--
Confidence 554443 333321 344457888766 3443 78888888888521
Q ss_pred CCCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-hhhccc-
Q 003378 243 DPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA- 320 (824)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~- 320 (824)
.+..+... +.+....+...+.+.+|+|.+++.|+++.+.||++ ..++.++|+ .+++++.+ +.|+|+
T Consensus 219 --~g~~i~~~-----eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee--~~ps~~~l~---~aIRr~Ti~r~fvPVl 286 (721)
T KOG0465|consen 219 --NGEIVRKD-----EIPEDLEELAEEKRQALIETLADVDETLAEMFLEE--EEPSAQQLK---AAIRRATIKRSFVPVL 286 (721)
T ss_pred --CCceeEec-----cCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcc--CCCCHHHHH---HHHHHHHhhcceeeEE
Confidence 11222222 34567788888999999999999999999999998 778999887 57777766 789997
Q ss_pred ---------hHHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCC-CeEEEEEEeeecCCCCcceeEEEE
Q 003378 321 ---------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEG-PLMLYVSKMIPASDKGRFFAFGRV 390 (824)
Q Consensus 321 ---------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-p~va~VfK~~~~~~~g~~l~~~RV 390 (824)
+|+|||+|++|||||.|..++.+.+ .. +.+ ++....+.++. ||+|++||+..+++ |+ ++|+||
T Consensus 287 ~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~k--e~--~~~-ekv~l~~~~d~~Pfv~LAFKle~g~f-Gq-LTyvRv 359 (721)
T KOG0465|consen 287 CGSALKNKGVQPLLDAVVDYLPSPSEVENYALNK--ET--NSK-EKVTLSPSRDKDPFVALAFKLEEGRF-GQ-LTYVRV 359 (721)
T ss_pred echhhcccCcchHHHHHHHhCCChhhhccccccc--CC--CCc-cceEeccCCCCCceeeeEEEeeecCc-cc-eEEEEE
Confidence 8999999999999999998876652 11 111 13344444444 99999999999888 77 999999
Q ss_pred EeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCCCccc
Q 003378 391 FSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHP 469 (824)
Q Consensus 391 ~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~~~~~ 469 (824)
|+|+|++||.|| |.+++++ +|+.+|+.||+++.++|+++.||||||+.|++. .|| |+++... ....
T Consensus 360 YqG~L~kG~~iy----N~rtgKK-----vrv~RL~rmHa~~medV~~v~AG~I~alfGidc---asGDTftd~~~-~~~~ 426 (721)
T KOG0465|consen 360 YQGTLSKGDTIY----NVRTGKK-----VRVGRLVRMHANDMEDVNEVLAGDICALFGIDC---ASGDTFTDKQN-LALS 426 (721)
T ss_pred eeeeecCCcEEE----ecCCCce-----eEhHHHhHhcccccchhhhhhccceeeeecccc---ccCceeccCcc-ccce
Confidence 999999999999 6777766 899999999999999999999999999999954 588 9988732 1556
Q ss_pred cccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCceEEEec-CCCcEEEEecchHHHHHHHHHHHhhccCCeEEE
Q 003378 470 IRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEII 548 (824)
Q Consensus 470 ~~~~~~~~~Pv~~~aVep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~il~g~GElHLei~~~rL~~~~~~~v~v~ 548 (824)
+..+..| +||+++||+|.+..|.+++.+||.++.+|||++++..+ |+||++|+|||||||||..+||+++| ++++.
T Consensus 427 m~si~vP-ePVis~aikP~~k~d~~~fskaL~rf~~EDPtFrv~~d~E~kqTvIsGMGELHLEIy~eRl~rEy--~~~~~ 503 (721)
T KOG0465|consen 427 MESIHIP-EPVISVAIKPVNKKDADNFSKALNRFTKEDPTFRVSLDPEMKQTVISGMGELHLEIYVERLVREY--KVDAE 503 (721)
T ss_pred eeeeecC-CCeeEEEecccccccHHHHHHHHHhhcccCCceEEEeccccccchhhccchhhHHHHHHHHHHHh--CCccc
Confidence 7788776 99999999999999999999999999999999999998 99999999999999999999999999 99999
Q ss_pred EeCCeEeEEecccccccceeeeecCCCeeEEEEEEeeCchhhhhhhcCCcCCCCCChhhHHHhhhhhcCCchhccCeEE-
Q 003378 549 KSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIW- 627 (824)
Q Consensus 549 ~s~p~V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~- 627 (824)
+|+|+|+|||||..+++... .|++ |+|+. +||+- +.
T Consensus 504 ~Gkp~VayRETi~~~~~f~~------~hKk----------------qSgG~--------------gqy~k-------v~g 540 (721)
T KOG0465|consen 504 LGKPQVAYRETITSPVEFDY------THKK----------------QSGGA--------------GQYGK-------VEG 540 (721)
T ss_pred cCCceeeehhhcCCccccee------eecc----------------ccCCC--------------ccccc-------eee
Confidence 99999999999998875432 2333 44443 44442 11
Q ss_pred EeccCCC---CCceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCcceeEEEEeeeeecc-cccccCCCChHHHHH
Q 003378 628 CFGPETI---GPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTAR 703 (824)
Q Consensus 628 ~~gp~~~---g~n~~~~~~~g~~~~~~~~~~i~~Gf~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~ 703 (824)
-+.|-+. ....|.+.+.|++.+.+|++++++||.++|+.|||+|+|+.|++|.|.||.+|+ ||++.+ |+.|++
T Consensus 541 ~~epl~~~~~~~~eF~~~~~g~~~P~~f~pa~ekg~~e~~~~G~L~ghpl~~~r~~l~Dga~h~vds~ela---f~~at~ 617 (721)
T KOG0465|consen 541 VIEPLPPGSNEKFEFSDEIVGGNVPKQFIPAVEKGFEEIVAKGPLIGHPLSNLRIVLQDGAHHPVDSSELA---FMKATR 617 (721)
T ss_pred EEeecCCCCCceEEEEecccCCCCchhHHHHHHHHHHHHHhcCCccCCcccceEEEEecCCcCcccccHHH---HHHHHH
Confidence 1233211 235788999999999999999999999999999999999999999999999998 888877 568999
Q ss_pred HHHHHHHHhcCCccccc-----------cccchheccccccceeeeeeccCCCCceEEEEEechhhhcCchHHHhhhCCC
Q 003378 704 RVIYASQLTAKPRLLEP-----------ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSG 772 (824)
Q Consensus 704 ~a~~~a~~~a~~~LlEP-----------~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G 772 (824)
.|+++|+.+|+|++||| ++|.|+++|++|+|.|.+.+..+ ++++|.|.|||.+||||+++|||+|+|
T Consensus 618 ~a~r~a~~~a~p~iLEPIM~Vevt~P~EfqG~Vi~~L~kR~a~I~~~d~~~--~~~ti~A~VPL~~mfgYss~LRslTqG 695 (721)
T KOG0465|consen 618 NAFREAFKRAPPRILEPIMNVEVTTPEEFQGTVIGDLNKRKAQITGIDSSE--DYKTIKAEVPLNEMFGYSSELRSLTQG 695 (721)
T ss_pred HHHHHHHHhCCcceeecceeeEEecchhhhhhhhhhhhhcccEEecccCCC--ceEEEEecccHHHHhhhhhhhhhhhcC
Confidence 99999999999999999 99999999999999999998765 599999999999999999999999999
Q ss_pred ceEeEeEecceeecCCCCCCCchHHHHHHH
Q 003378 773 QAFPQCVFDHWDMMSSDPLEPGSQASQLVL 802 (824)
Q Consensus 773 ~~~~~~~f~~y~~v~~~~~~~~~~a~~~i~ 802 (824)
+|.|+|+|++|+++|.+. +++++.
T Consensus 696 kgeftMEys~y~p~~~~v------q~~~~~ 719 (721)
T KOG0465|consen 696 KGEFTMEYSRYSPVPPDV------QDQLVH 719 (721)
T ss_pred cceEEEeecccCCCchHH------HHHhhc
Confidence 999999999999999985 667654
No 10
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=1.4e-109 Score=989.67 Aligned_cols=653 Identities=28% Similarity=0.411 Sum_probs=545.4
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccc--cCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG 83 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~--~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 83 (824)
.+.++|+| +||+|||||||+++|++.+|.+.+. ..+..+++|+.++|++||+|++++..++.|.
T Consensus 6 ~~irni~i---iGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~----------- 71 (691)
T PRK12739 6 EKTRNIGI---MAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK----------- 71 (691)
T ss_pred cCeeEEEE---ECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC-----------
Confidence 35578999 9999999999999999999977552 1112579999999999999999999999996
Q ss_pred ccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCH
Q 003378 84 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDG 163 (824)
Q Consensus 84 ~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~ 163 (824)
+++++|||||||.+|..++.++++.+|+||+|||+.+|++.||+.+|+++.+.++|+|+|+||||+. +++.
T Consensus 72 -----~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~----~~~~ 142 (691)
T PRK12739 72 -----GHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRI----GADF 142 (691)
T ss_pred -----CEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCC----CCCH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 7774
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcccC
Q 003378 164 EEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFD 243 (824)
Q Consensus 164 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~~ 243 (824)
++. +++++..+.. .+...++|++.. .++.- .+|+..+..++|++...
T Consensus 143 ~~~-------~~~i~~~l~~-----------~~~~~~iPis~~-~~f~g-------------~vd~~~~~~~~~~~~~~- 189 (691)
T PRK12739 143 FRS-------VEQIKDRLGA-----------NAVPIQLPIGAE-DDFKG-------------VIDLIKMKAIIWDDETL- 189 (691)
T ss_pred HHH-------HHHHHHHhCC-----------CceeEEeccccc-ccceE-------------EEEcchhhhhhccCCCC-
Confidence 433 3333333321 122225565433 22110 16777888899986411
Q ss_pred CCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-hhhccc--
Q 003378 244 PATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA-- 320 (824)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~-- 320 (824)
++++... +.+..+.+++++++++|++.+++.|+++|++||++ ..++.+++. ..+.+.++ .+|+|+
T Consensus 190 --~~~~~~~-----~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~--~~~~~~~l~---~~l~~~~~~~~~~Pv~~ 257 (691)
T PRK12739 190 --GAKYEEE-----DIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEG--EEITEEEIK---AAIRKATINMEFFPVLC 257 (691)
T ss_pred --CCeeEEc-----CCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhcc--CCCCHHHHH---HHHHHHHHcCCEEEEEe
Confidence 2223332 23456788999999999999999999999999987 678888886 35555555 589997
Q ss_pred --------hHHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEEe
Q 003378 321 --------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFS 392 (824)
Q Consensus 321 --------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~s 392 (824)
+++|||+|++++|+|.+++..+.....+ . ....+.|++++|++|+|||+.++++.|+ ++|+||||
T Consensus 258 gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~----~--~~~~~~~~~~~pl~a~VfK~~~d~~~G~-i~~~RV~s 330 (691)
T PRK12739 258 GSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDT----E--EEIERPASDDEPFAALAFKIMTDPFVGR-LTFFRVYS 330 (691)
T ss_pred ccccCCccHHHHHHHHHHHCCChhhccccccccCCC----C--cceeeccCCCCCeEEEEEEeeeCCCCCe-EEEEEEee
Confidence 7999999999999998876654432211 1 2356789999999999999999999887 99999999
Q ss_pred eeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCCCccccc
Q 003378 393 GKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIR 471 (824)
Q Consensus 393 G~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~~~~~~~ 471 (824)
|+|++||.|++ .+++++ ++|.+||.++|++..++++++|||||+|.|++++ ++| ||++... +..++
T Consensus 331 GtL~~g~~v~~----~~~~~~-----~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~gdtl~~~~~--~~~l~ 397 (691)
T PRK12739 331 GVLESGSYVLN----TTKGKK-----ERIGRLLQMHANKREEIKEVYAGDIAAAVGLKDT--TTGDTLCDEKA--PIILE 397 (691)
T ss_pred eEEcCCCEEEe----CCCCce-----EEecceEEEecCCcccccccCCCCEEEEeCCCcc--cCCCEEeCCCC--ccccC
Confidence 99999999984 434433 7999999999999999999999999999999986 788 9988765 56778
Q ss_pred cccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCceEEEec-CCCcEEEEecchHHHHHHHHHHHhhccCCeEEEEe
Q 003378 472 AMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKS 550 (824)
Q Consensus 472 ~~~~~~~Pv~~~aVep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~il~g~GElHLei~~~rL~~~~~~~v~v~~s 550 (824)
++.++ +|+++++|+|.+++|+++|.+||++|+++||+|+|+++ +|||++|+||||||||+|++||+++| +++++++
T Consensus 398 ~~~~~-~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~f--~vev~~s 474 (691)
T PRK12739 398 SMEFP-EPVISLAVEPKTKADQDKMGLALQKLAEEDPTFRVETDEETGQTIISGMGELHLDIIVDRMKREF--KVEANVG 474 (691)
T ss_pred CCCCC-CceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHHHHHHHHHHHHHh--CCeeEec
Confidence 88885 99999999999999999999999999999999999997 89999999999999999999999999 9999999
Q ss_pred CCeEeEEecccccccceeeeecCCCeeEEEEEEeeCchhhhhhhcCCcCCCCCChhhHHHhhhhhcCCchhccCeEE-Ee
Q 003378 551 DPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIW-CF 629 (824)
Q Consensus 551 ~p~V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~ 629 (824)
+|+|+|||||.+.++.. ++|++ ++|+. ++|+ .+| .+
T Consensus 475 ~p~V~yrEti~~~~~~~------~~~~~----------------~s~g~--------------~~~~-------~v~l~~ 511 (691)
T PRK12739 475 APQVAYRETITKSVEAE------GKYKK----------------QSGGR--------------GQYG-------DVWIEF 511 (691)
T ss_pred CCEEEEeeccCCccccc------ceecc----------------ccCCC--------------Ccee-------EEEEEE
Confidence 99999999999876322 22322 22211 2222 122 24
Q ss_pred ccCCCC-CceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCcceeEEEEeeeeecc-cccccCCCChHHHHHHHHH
Q 003378 630 GPETIG-PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIY 707 (824)
Q Consensus 630 gp~~~g-~n~~~~~~~g~~~~~~~~~~i~~Gf~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~ 707 (824)
+|...| ++.|.+++.|+.++++|++||++||+|||++|||||+||+||+|+|.|+++|. |+++ ++++.|+++||+
T Consensus 512 ~P~~~~~~~~~~~~i~~g~~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~~s~~---~~~~~a~~~a~~ 588 (691)
T PRK12739 512 EPNEEGKGFEFVNKIVGGVIPKEYIPAVEKGLEEAMKNGVLAGYPMVDVKATLYDGSYHDVDSSE---LAFKIAASMALK 588 (691)
T ss_pred EECCCCCCcEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEEeccCCCCCcH---HHHHHHHHHHHH
Confidence 553332 58899999999999999999999999999999999999999999999999997 5544 346789999999
Q ss_pred HHHHhcCCccccc-----------cccchheccccccceeeeeeccCCCCceEEEEEechhhhcCchHHHhhhCCCceEe
Q 003378 708 ASQLTAKPRLLEP-----------ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFP 776 (824)
Q Consensus 708 ~a~~~a~~~LlEP-----------~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~ 776 (824)
+|+++|+|+|||| ++|+||++|++|||+|++++..++ ++.|+|++|++|+|||+++||++|+|+|+|
T Consensus 589 ~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~~~~~--~~~i~a~vP~~e~~g~~~~Lr~~T~G~a~~ 666 (691)
T PRK12739 589 EAAKKAGPVILEPIMKVEVVTPEEYMGDVIGDLNRRRGQIQGMEARGG--AQIVKAFVPLSEMFGYATDLRSATQGRATF 666 (691)
T ss_pred HHHHhCCCeeecceEEEEEEEchHhhhhHHHHHHhcCCeEECccccCC--cEEEEEEeCHHHhhccHHHHHhhccCceEE
Confidence 9999999999999 999999999999999999987664 678999999999999999999999999999
Q ss_pred EeEecceeecCCCCCCCchHHHHHHHH
Q 003378 777 QCVFDHWDMMSSDPLEPGSQASQLVLD 803 (824)
Q Consensus 777 ~~~f~~y~~v~~~~~~~~~~a~~~i~~ 803 (824)
+|+|+||+++|++. +++++.+
T Consensus 667 ~~~f~~y~~v~~~~------~~~ii~~ 687 (691)
T PRK12739 667 SMEFDHYEEVPKNI------AEEIIKK 687 (691)
T ss_pred EEEeccceECCHHH------HHHHHHH
Confidence 99999999999864 8888755
No 11
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=5.4e-109 Score=983.82 Aligned_cols=651 Identities=28% Similarity=0.388 Sum_probs=541.6
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccc--cCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG 83 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~--~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 83 (824)
.+-++|+| +||+|||||||+++|++.+|.+... ..+.++++|+.++|++||+|++++.+++.|.
T Consensus 8 ~~Irni~i---iG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~----------- 73 (693)
T PRK00007 8 ERYRNIGI---MAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK----------- 73 (693)
T ss_pred cceeEEEE---ECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC-----------
Confidence 45679999 9999999999999999999987651 1122579999999999999999999999997
Q ss_pred ccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCH
Q 003378 84 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDG 163 (824)
Q Consensus 84 ~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~ 163 (824)
+++|||||||||.||..++.++++.+|+||+|||+.+|++.||+.+|+++.+.++|+|+|+||||+. +++.
T Consensus 74 -----~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~----~~~~ 144 (693)
T PRK00007 74 -----DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRT----GADF 144 (693)
T ss_pred -----CeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCC----CCCH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 7774
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccce-eeehhhHHHHhhhhcCCChHHHHHHhhcCccc
Q 003378 164 EEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGW-AFTLTNFAKMYASKFGVDESKMMERLWGENFF 242 (824)
Q Consensus 164 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~-~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~ 242 (824)
.++.+.+++ .+.. .+....+|++ +..|+ ++ +|+..+..++|++..
T Consensus 145 ~~~~~~i~~-------~l~~-----------~~~~~~ipis-a~~~f~g~--------------~d~~~~~~~~~~~~~- 190 (693)
T PRK00007 145 YRVVEQIKD-------RLGA-----------NPVPIQLPIG-AEDDFKGV--------------VDLVKMKAIIWNEAD- 190 (693)
T ss_pred HHHHHHHHH-------HhCC-----------CeeeEEecCc-cCCcceEE--------------EEcceeeeeecccCC-
Confidence 444333322 2211 1111245553 33321 11 456666778887421
Q ss_pred CCCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-hhhccc-
Q 003378 243 DPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA- 320 (824)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~- 320 (824)
.+.++...+ .+....+++.+++++|++.+++.|+++|++||++ ++++.+++. .++.++++ .+|+|+
T Consensus 191 --~~~~~~~~~-----~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~--~~l~~~~l~---~~l~~~~~~~~~~Pv~ 258 (693)
T PRK00007 191 --LGATFEYEE-----IPADLKDKAEEYREKLIEAAAEADEELMEKYLEG--EELTEEEIK---AALRKATIANEIVPVL 258 (693)
T ss_pred --CCCcceEcc-----CCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCc--CCCCHHHHH---HHHHHHHhcCcEEEEE
Confidence 122233222 2345677888999999999999999999999986 889999987 45555555 589998
Q ss_pred ---------hHHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEE
Q 003378 321 ---------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVF 391 (824)
Q Consensus 321 ---------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~ 391 (824)
+++|||+|++++|+|.+++..+.. ..+.+.....+.|++++|++|||||+.++++.|+ ++|+|||
T Consensus 259 ~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~-ia~~RV~ 332 (693)
T PRK00007 259 CGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGI-----LPDGEEEEVERKASDDEPFSALAFKIMTDPFVGK-LTFFRVY 332 (693)
T ss_pred ecccccCcCHHHHHHHHHHHCCChhhccccccc-----CCCccccceeecCCCCCCeEEEEEEeeecCCCCc-EEEEEEe
Confidence 599999999999999876543210 0011123456789999999999999999999887 9999999
Q ss_pred eeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCCCcccc
Q 003378 392 SGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPI 470 (824)
Q Consensus 392 sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~~~~~~ 470 (824)
||+|++||.|++ .+++++ ++|++||.++|++..++++|.|||||+|.|+++. ++| ||++.+. +..+
T Consensus 333 sGtl~~g~~v~~----~~~~~~-----eki~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~GdtL~~~~~--~~~l 399 (693)
T PRK00007 333 SGVLESGSYVLN----STKGKK-----ERIGRILQMHANKREEIKEVRAGDIAAAVGLKDT--TTGDTLCDEKN--PIIL 399 (693)
T ss_pred eeEEcCCCEEEe----CCCCce-----eEeceeEEeccCCcccccccCCCcEEEEeCCccC--CcCCEeeCCCC--cccc
Confidence 999999999994 333333 7999999999999999999999999999999886 688 9988765 5667
Q ss_pred ccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCceEEEec-CCCcEEEEecchHHHHHHHHHHHhhccCCeEEEE
Q 003378 471 RAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIK 549 (824)
Q Consensus 471 ~~~~~~~~Pv~~~aVep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~il~g~GElHLei~~~rL~~~~~~~v~v~~ 549 (824)
+++.++ +|+++++|+|.++.|.+||.+||++|++|||+|+|..+ +|||++|+||||||||||++||+++| ++++++
T Consensus 400 ~~~~~~-~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~~l~g~GelHLei~~~rL~~~~--~vev~~ 476 (693)
T PRK00007 400 ESMEFP-EPVISVAVEPKTKADQEKMGIALQKLAEEDPSFRVSTDEETGQTIIAGMGELHLDIIVDRMKREF--KVEANV 476 (693)
T ss_pred CCCCCC-CceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHhHHHHHHHHHHHh--CCeeEe
Confidence 778775 99999999999999999999999999999999999997 89999999999999999999999999 999999
Q ss_pred eCCeEeEEecccccccceee----eecCCCeeEEEEEEeeCchhhhhhhcCCcCCCCCChhhHHHhhhhhcCCchhccCe
Q 003378 550 SDPVVSFRETVLEKSCRTVM----SKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKK 625 (824)
Q Consensus 550 s~p~V~yrETi~~~~~~~~~----~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (824)
++|+|+|||||.++++.... ....+++..++++++|++.+
T Consensus 477 s~p~V~yrETi~~~~~~~~~~~~~~gg~~~~~~v~l~~eP~~~~------------------------------------ 520 (693)
T PRK00007 477 GKPQVAYRETIRKKVEVEGKFVKQSGGRGQYGHVVIEFEPNEPG------------------------------------ 520 (693)
T ss_pred cCCEEEEeecccCccccCcccccccCCCCceEEEEEEEEeCCCC------------------------------------
Confidence 99999999999987532111 11223345566666665321
Q ss_pred EEEeccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCcceeEEEEeeeeecc-cccccCCCChHHHHHH
Q 003378 626 IWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARR 704 (824)
Q Consensus 626 v~~~gp~~~g~n~~~~~~~g~~~~~~~~~~i~~Gf~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~ 704 (824)
.++.|.+.+.|+.++++|++||++||++|+++|||||+||+||+|+|+|+.+|. |+++. ++..|+++
T Consensus 521 ---------~~~~f~~~i~~g~~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~~~~ds~~~---~~~~a~~~ 588 (693)
T PRK00007 521 ---------KGYEFVNKIVGGVIPKEYIPAVDKGIQEAMESGVLAGYPVVDVKVTLFDGSYHDVDSSEM---AFKIAGSM 588 (693)
T ss_pred ---------CCcEEeecccCCcCcHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEecccCCCCCcHH---HHHHHHHH
Confidence 246788888899999999999999999999999999999999999999999997 66543 46789999
Q ss_pred HHHHHHHhcCCccccc-----------cccchheccccccceeeeeeccCCCCceEEEEEechhhhcCchHHHhhhCCCc
Q 003378 705 VIYASQLTAKPRLLEP-----------ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQ 773 (824)
Q Consensus 705 a~~~a~~~a~~~LlEP-----------~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~ 773 (824)
||++|+++|+|+|||| ++|+||++|++|||+|++++..+ +++.|+|.+|++|||||+++|||+|+|+
T Consensus 589 a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~~~~--~~~~i~a~vP~~e~~g~~~~Lrs~T~G~ 666 (693)
T PRK00007 589 AFKEAAKKANPVLLEPIMKVEVVTPEEYMGDVIGDLNSRRGQIEGMEDRG--GAKVIRAEVPLSEMFGYATDLRSMTQGR 666 (693)
T ss_pred HHHHHHHHCCCEEecCcEEEEEEechhhhhhHHHHHHhCCCeEecccccC--CcEEEEEEcCHHHhhccHHHHHhhcCCc
Confidence 9999999999999999 99999999999999999987654 4789999999999999999999999999
Q ss_pred eEeEeEecceeecCCCCCCCchHHHHHHHH
Q 003378 774 AFPQCVFDHWDMMSSDPLEPGSQASQLVLD 803 (824)
Q Consensus 774 ~~~~~~f~~y~~v~~~~~~~~~~a~~~i~~ 803 (824)
|+|+++|+||++||++. +++++.+
T Consensus 667 a~~~~~f~~y~~v~~~~------~~~~~~~ 690 (693)
T PRK00007 667 ATYSMEFDHYEEVPKNV------AEEIIKK 690 (693)
T ss_pred eEEEEEeceeeECCHHH------HHHHHHH
Confidence 99999999999999875 7777654
No 12
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=3.4e-106 Score=961.45 Aligned_cols=646 Identities=27% Similarity=0.362 Sum_probs=535.7
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCc----eeecCChhhHhHhccceeeceEEEEEeechhhhhcc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGD----VRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSY 81 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~----~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~ 81 (824)
.+-.+|+| +||+|||||||+++|++.+|.+.+ .|+ ++++|+.++|++||+|++++..++.|+
T Consensus 8 ~~irni~i---iG~~~~GKsTL~~~ll~~~g~~~~--~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--------- 73 (689)
T TIGR00484 8 NRFRNIGI---SAHIDAGKTTTTERILFYTGRIHK--IGEVHDGAATMDWMEQEKERGITITSAATTVFWK--------- 73 (689)
T ss_pred ccccEEEE---ECCCCCCHHHHHHHHHHhCCCccc--cccccCCccccCCCHHHHhcCCCEecceEEEEEC---------
Confidence 34569999 999999999999999999998755 332 478999999999999999999999997
Q ss_pred ccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccC
Q 003378 82 RGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQV 161 (824)
Q Consensus 82 ~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~ 161 (824)
+++++|||||||.+|..++..+++.+|++|+|||+.+|++.|++.+|+++.+.++|+++|+||||+. ++
T Consensus 74 -------~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~----~~ 142 (689)
T TIGR00484 74 -------GHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKT----GA 142 (689)
T ss_pred -------CeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCC----CC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 87
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcc
Q 003378 162 DGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENF 241 (824)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~ 241 (824)
+.++..+.++ ..+.. .+....+|++. ..++.- + +|+..+..++|
T Consensus 143 ~~~~~~~~i~-------~~l~~-----------~~~~~~ipis~-~~~~~~------------~-id~~~~~~~~~---- 186 (689)
T TIGR00484 143 NFLRVVNQIK-------QRLGA-----------NAVPIQLPIGA-EDNFIG------------V-IDLVEMKAYFF---- 186 (689)
T ss_pred CHHHHHHHHH-------HHhCC-----------CceeEEecccc-CCCceE------------E-EECccceEEec----
Confidence 7444443333 33211 12222455533 222210 0 34444433333
Q ss_pred cCCCC-CceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-hhhcc
Q 003378 242 FDPAT-RKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLP 319 (824)
Q Consensus 242 ~~~~~-~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P 319 (824)
+... ..+.. ......+.+++.+++++|+|++++.|+++|++||++ .+++.+++. +++.++++ .+++|
T Consensus 187 -~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~--~~~~~~~l~---~~l~~~~~~~~~~P 255 (689)
T TIGR00484 187 -NGDKGTKAIE-----KEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEG--EELTIEEIK---NAIRKGVLNCEFFP 255 (689)
T ss_pred -ccCCCceeee-----ccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCC--CCCCHHHHH---HHHHHHHhcCCEEE
Confidence 3211 11221 234567888999999999999999999999999996 788888886 45666655 57888
Q ss_pred c----------hHHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEE
Q 003378 320 A----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGR 389 (824)
Q Consensus 320 ~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~R 389 (824)
+ +++|||+|++++|+|.+++..+... .+......+.|++++|++|+|||+..+++.|. ++|+|
T Consensus 256 V~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~------~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~-i~~~R 328 (689)
T TIGR00484 256 VLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGID------PDTEKEIERKASDDEPFSALAFKVATDPFVGQ-LTFVR 328 (689)
T ss_pred EEeccccCCccHHHHHHHHHHHCCCchhcccccccC------CCCCceeeecCCCCCceEEEEEEeeecCCCCe-EEEEE
Confidence 7 5999999999999998765432211 01112345788999999999999999999886 99999
Q ss_pred EEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCCCcc
Q 003378 390 VFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAH 468 (824)
Q Consensus 390 V~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~~~~ 468 (824)
||||+|++||.|++ .+.+.+ ++|++|+.++|++..++++++|||||+|.|++++ .+| ||++... ..
T Consensus 329 V~sGtL~~g~~v~~----~~~~~~-----~~i~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~gdtl~~~~~--~~ 395 (689)
T TIGR00484 329 VYSGVLKSGSYVKN----SRKNKK-----ERVGRLVKMHANNREEIKEVRAGDICAAIGLKDT--TTGDTLCDPKI--DV 395 (689)
T ss_pred EEEeEEcCCCEEEe----CCCCce-----EEecceEEeecCCcccccccCCCCEEEEcCCCCC--CCCCEEeCCCC--cc
Confidence 99999999999994 333333 7999999999999999999999999999999887 677 9988765 56
Q ss_pred ccccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCceEEEec-CCCcEEEEecchHHHHHHHHHHHhhccCCeEE
Q 003378 469 PIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEI 547 (824)
Q Consensus 469 ~~~~~~~~~~Pv~~~aVep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~il~g~GElHLei~~~rL~~~~~~~v~v 547 (824)
.++++.++ +|+++++|+|.++.|++||.+||++|+++||+|+|+.+ +|||++|+||||||||||++||+++| ++++
T Consensus 396 ~~~~~~~~-~Pvl~~~i~p~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~~L~~~~--~vev 472 (689)
T TIGR00484 396 ILERMEFP-EPVISLAVEPKTKADQEKMGIALGKLAEEDPTFRTFTDPETGQTIIAGMGELHLDIIVDRMKREF--KVEA 472 (689)
T ss_pred ccCCCCCC-CceEEEEEEECCcccHHHHHHHHHHHHHhCCEEEEEECCCCCCEEEEEeeHHHHHHHHHHHHHHh--CCee
Confidence 67777775 99999999999999999999999999999999999997 89999999999999999999999999 9999
Q ss_pred EEeCCeEeEEecccccccceeee----ecCCCeeEEEEEEeeCchhhhhhhcCCcCCCCCChhhHHHhhhhhcCCchhcc
Q 003378 548 IKSDPVVSFRETVLEKSCRTVMS----KSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLA 623 (824)
Q Consensus 548 ~~s~p~V~yrETi~~~~~~~~~~----~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (824)
++++|+|+|||||.++++..... ...+.++.++++++|++
T Consensus 473 ~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~l~~eP~~------------------------------------ 516 (689)
T TIGR00484 473 NVGAPQVAYRETIRSKVEVEGKHAKQSGGRGQYGHVKIRFEPLE------------------------------------ 516 (689)
T ss_pred EecCCEEEEeecccCccccccccccccCCCCceEEEEEEEEECC------------------------------------
Confidence 99999999999998876431111 12233456666666654
Q ss_pred CeEEEeccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCcceeEEEEeeeeecc-cccccCCCChHHHH
Q 003378 624 KKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTA 702 (824)
Q Consensus 624 ~~v~~~gp~~~g~n~~~~~~~g~~~~~~~~~~i~~Gf~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~ 702 (824)
.+++.|.+.+.++.++++|++||++||+||+++|||||+||+||+|+|+|+++|. |++.. +++.|+
T Consensus 517 ----------~~g~~~~~~i~~g~~~~~~~~av~~g~~~a~~~GpL~g~pv~~v~v~l~~~~~~~~~s~~~---~~~~a~ 583 (689)
T TIGR00484 517 ----------PKGYEFVNEIKGGVIPREYIPAVDKGLQEAMESGPLAGYPVVDIKATLFDGSYHDVDSSEM---AFKLAA 583 (689)
T ss_pred ----------CCCcEEEEeccCCcCCHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEEeecCCCCCCHH---HHHHHH
Confidence 2345677777888899999999999999999999999999999999999999997 55433 456899
Q ss_pred HHHHHHHHHhcCCccccc-----------cccchheccccccceeeeeeccCCCCceEEEEEechhhhcCchHHHhhhCC
Q 003378 703 RRVIYASQLTAKPRLLEP-----------ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATS 771 (824)
Q Consensus 703 ~~a~~~a~~~a~~~LlEP-----------~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~ 771 (824)
++||++|+++|+|+|||| ++|+|+++|++|||+|.+++..+ +++.|+|++|++|||||+++||++|+
T Consensus 584 ~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~--~~~~I~a~vP~~e~~g~~~~Lrs~T~ 661 (689)
T TIGR00484 584 SLAFKEAGKKANPVLLEPIMKVEVEVPEEYMGDVMGDLSSRRGIIEGMEARG--NVQKIKAEVPLSEMFGYATDLRSFTQ 661 (689)
T ss_pred HHHHHHHHHhCCCeeecCcEEEEEEecHHHhHhHHHHHHhcCCeEecccccC--CcEEEEEEeCHHHHhChHHHHHHhcC
Confidence 999999999999999999 99999999999999999987654 57999999999999999999999999
Q ss_pred CceEeEeEecceeecCCCCCCCchHHHHHHHH
Q 003378 772 GQAFPQCVFDHWDMMSSDPLEPGSQASQLVLD 803 (824)
Q Consensus 772 G~~~~~~~f~~y~~v~~~~~~~~~~a~~~i~~ 803 (824)
|+|+|+|+|+||++||+++ +++++.+
T Consensus 662 G~~~~~~~f~~y~~v~~~~------~~~ii~~ 687 (689)
T TIGR00484 662 GRGTYSMEFLHYGEVPSSV------ANEIIEK 687 (689)
T ss_pred CceEEEEEeccceeCCHHH------HHHHHHh
Confidence 9999999999999999986 8887754
No 13
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=2.2e-103 Score=940.03 Aligned_cols=647 Identities=28% Similarity=0.394 Sum_probs=538.2
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCccccc--CCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccc
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV--AGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~--~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (824)
+..+|+| +||+|||||||+++|++.+|.+.+.. .+.++++|+.++|++||+|+.++..++.|.
T Consensus 7 ~irni~i---iG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~------------ 71 (687)
T PRK13351 7 QIRNIGI---LAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD------------ 71 (687)
T ss_pred cccEEEE---ECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEEC------------
Confidence 4579999 99999999999999999998876521 112468999999999999999999999996
Q ss_pred cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCHH
Q 003378 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGE 164 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~ 164 (824)
++.++|||||||.||..++..+++.+|++|+|+|+.+|++.++..+|+++...++|+++|+||+|+. +++.
T Consensus 72 ----~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~----~~~~- 142 (687)
T PRK13351 72 ----NHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRV----GADL- 142 (687)
T ss_pred ----CEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCC----CCCH-
Confidence 8899999999999999999999999999999999999999999999999999999999999999999 8874
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecc--cCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCccc
Q 003378 165 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFS--AGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFF 242 (824)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~--s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~ 242 (824)
.+.+++++..+.. .+...++|.. +.+.|| +|+..+..+.|+..
T Consensus 143 ------~~~~~~i~~~l~~-----------~~~~~~~P~~~~~~~~g~----------------id~~~~~~~~~~~~-- 187 (687)
T PRK13351 143 ------FKVLEDIEERFGK-----------RPLPLQLPIGSEDGFEGV----------------VDLITEPELHFSEG-- 187 (687)
T ss_pred ------HHHHHHHHHHHCC-----------CeEEEEeccccCCceEEE----------------EECccceEEecccC--
Confidence 4444555444421 1111133332 233444 34444445667532
Q ss_pred CCCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-hhhccc-
Q 003378 243 DPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA- 320 (824)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~- 320 (824)
..+..+... +.+..+.+++++++++|++.+++.|++++++||++ ++++.+++.. .+.+.++ ++|+|+
T Consensus 188 -~~~~~~~~~-----~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~--~~l~~~~l~~---~~~~~~~~~~~~PV~ 256 (687)
T PRK13351 188 -DGGSTVEEG-----PIPEELLEEVEEAREKLIEALAEFDDELLELYLEG--EELSAEQLRA---PLREGTRSGHLVPVL 256 (687)
T ss_pred -CCCCceEEc-----cCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCC--CCCCHHHHHH---HHHHHHHhCCEEEEE
Confidence 112233332 23457889999999999999999999999999985 8899999864 3444433 689997
Q ss_pred ---------hHHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEE
Q 003378 321 ---------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVF 391 (824)
Q Consensus 321 ---------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~ 391 (824)
++.|||+|++++|+|.+++..+... + +. ....+.|++++|++|+|||+..+++.|. ++|+|||
T Consensus 257 ~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~---~---~~-~~~~~~~~~~~pl~a~VfK~~~d~~~G~-i~~~RV~ 328 (687)
T PRK13351 257 FGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSK---D---NG-KPVKVDPDPEKPLLALVFKVQYDPYAGK-LTYLRVY 328 (687)
T ss_pred ecccCcCccHHHHHHHHHHHCCChhhcccccccC---C---CC-CceeecCCCCCCeEEEEEEeeecCCCce-EEEEEEe
Confidence 5899999999999998766544321 0 00 1223678999999999999999998887 9999999
Q ss_pred eeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCCCcccc
Q 003378 392 SGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPI 470 (824)
Q Consensus 392 sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~~~~~~ 470 (824)
||+|++||.|++.+ ++.+ ++|++||.++|.+..++++|.||||++|.|+++. .+| ||++... ...+
T Consensus 329 sGtl~~g~~v~~~~----~~~~-----~~i~~i~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~gdtl~~~~~--~~~~ 395 (687)
T PRK13351 329 SGTLRAGSQLYNGT----GGKR-----EKVGRLFRLQGNKREEVDRAKAGDIVAVAGLKEL--ETGDTLHDSAD--PVLL 395 (687)
T ss_pred EEEEcCCCEEEeCC----CCCc-----eEeeeEEEEccCCeeECCccCCCCEEEEECcccC--ccCCEEeCCCC--cccc
Confidence 99999999999754 2333 7999999999999999999999999999999987 567 9988765 4566
Q ss_pred ccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCceEEEec-CCCcEEEEecchHHHHHHHHHHHhhccCCeEEEE
Q 003378 471 RAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIK 549 (824)
Q Consensus 471 ~~~~~~~~Pv~~~aVep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~il~g~GElHLei~~~rL~~~~~~~v~v~~ 549 (824)
+++.++ +|+++++|+|.++.|.++|.+||++|.+|||+|+|+.+ +|||++|+||||||||++++||+++| ++++++
T Consensus 396 ~~~~~~-~pv~~~~Iep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~ii~g~GelHLei~~~rL~~~~--~vev~~ 472 (687)
T PRK13351 396 ELLTFP-EPVVSLAVEPERRGDEQKLAEALEKLVWEDPSLRVEEDEETGQTILSGMGELHLEVALERLRREF--KLEVNT 472 (687)
T ss_pred CCCCCC-CccEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHh--CCceEe
Confidence 676664 99999999999999999999999999999999999997 89999999999999999999999999 999999
Q ss_pred eCCeEeEEecccccccceeee----ecCCCeeEEEEEEeeCchhhhhhhcCCcCCCCCChhhHHHhhhhhcCCchhccCe
Q 003378 550 SDPVVSFRETVLEKSCRTVMS----KSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKK 625 (824)
Q Consensus 550 s~p~V~yrETi~~~~~~~~~~----~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (824)
++|+|+|||||.+.++..... ...+++..++++++|++.+
T Consensus 473 ~~p~V~y~Eti~~~~~~~~~~~~~~~~~~~~~~v~~~~ep~~~~------------------------------------ 516 (687)
T PRK13351 473 GKPQVAYRETIRKMAEGVYRHKKQFGGKGQFGEVHLRVEPLERG------------------------------------ 516 (687)
T ss_pred cCCeEEEEeeccccccccceeeeccCCCceEEEEEEEEEECCCC------------------------------------
Confidence 999999999999876432111 1233456677777776421
Q ss_pred EEEeccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCcceeEEEEeeeeecccccccCCCChHHHHHHH
Q 003378 626 IWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRV 705 (824)
Q Consensus 626 v~~~gp~~~g~n~~~~~~~g~~~~~~~~~~i~~Gf~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a 705 (824)
.+++|.+.+.|+.++++|++||++||++||++|||||+||+||+|+|+|+.+|.+.+ ..++|++|+++|
T Consensus 517 ---------~g~~~~~~~~~~~~~~~~~~ai~~g~~~a~~~GpL~~~pv~~v~v~l~~~~~~~~~s--~~~~~~~a~~~a 585 (687)
T PRK13351 517 ---------AGFIFVSKVVGGAIPEELIPAVEKGIREALASGPLAGYPVTDLRVTVLDGKYHPVDS--SESAFKAAARKA 585 (687)
T ss_pred ---------CCcEEeecccCCcCCHHHHHHHHHHHHHHHhcCCCCCCceeeEEEEEEEecCCCCCC--CHHHHHHHHHHH
Confidence 137788888889999999999999999999999999999999999999999997332 357899999999
Q ss_pred HHHHHHhcCCccccc-----------cccchheccccccceeeeeeccCCCCceEEEEEechhhhcCchHHHhhhCCCce
Q 003378 706 IYASQLTAKPRLLEP-----------ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQA 774 (824)
Q Consensus 706 ~~~a~~~a~~~LlEP-----------~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~ 774 (824)
|++|+++|+|+|||| ++|+|+++|++|||+|++++..+++ .+.|+|++|++|||||+++||++|+|+|
T Consensus 586 ~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~-~~~i~a~vP~~e~~~~~~~Lrs~T~G~a 664 (687)
T PRK13351 586 FLEAFRKANPVLLEPIMELEITVPTEHVGDVLGDLSQRRGRIEGTEPRGDG-EVLVKAEAPLAELFGYATRLRSMTKGRG 664 (687)
T ss_pred HHHHHHhCCCeeecceEEEEEEechHhhhhHHHHHHhCCcEEeceecCCCc-EEEEEEEECHHHhhChHHHHHhhcCCce
Confidence 999999999999999 9999999999999999999876543 3349999999999999999999999999
Q ss_pred EeEeEecceeecCCCCCCCchHHHHHH
Q 003378 775 FPQCVFDHWDMMSSDPLEPGSQASQLV 801 (824)
Q Consensus 775 ~~~~~f~~y~~v~~~~~~~~~~a~~~i 801 (824)
+|+|+|+||++||+++ +++++
T Consensus 665 ~~~~~f~~y~~v~~~~------~~~~~ 685 (687)
T PRK13351 665 SFTMEFSHFDPVPPAV------QKKVG 685 (687)
T ss_pred EEEEEeccceeCCHHH------HHHHh
Confidence 9999999999999986 66664
No 14
>PRK12740 elongation factor G; Reviewed
Probab=100.00 E-value=1.5e-98 Score=897.27 Aligned_cols=634 Identities=29% Similarity=0.424 Sum_probs=524.9
Q ss_pred ccCCCCCHHHHHHHHHHHcCCcccccCCc----eeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCceeE
Q 003378 17 ANSTFAGKSTLTDSLVAAAGIIAQEVAGD----VRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 92 (824)
Q Consensus 17 ~G~~~~GKTTL~~~ll~~~g~i~~~~~g~----~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 92 (824)
+||+|||||||+++|++.+|.+++ .|+ .+++|+.+.|++||+|+.++..++.|. ++.+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~--~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~----------------~~~i 62 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHR--IGEVEDGTTTMDFMPEERERGISITSAATTCEWK----------------GHKI 62 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCcc--CccccCCcccCCCChHHHhcCCCeeeceEEEEEC----------------CEEE
Confidence 599999999999999999998876 332 479999999999999999999999996 8999
Q ss_pred EEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCHHHHHHHHHH
Q 003378 93 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQK 172 (824)
Q Consensus 93 ~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~~~~~ 172 (824)
+|||||||.+|..++..+++.+|++|+|+|+.+|+..++..+|+++...++|+++|+||+|+. +.+..++.+
T Consensus 63 ~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~----~~~~~~~~~---- 134 (668)
T PRK12740 63 NLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRA----GADFFRVLA---- 134 (668)
T ss_pred EEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCC----CCCHHHHHH----
Confidence 999999999999999999999999999999999999999999999999999999999999998 776444333
Q ss_pred HHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcccCCCCCceeec
Q 003378 173 VIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRKWTSR 252 (824)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~~~~~~~~~~~ 252 (824)
+++..+.. .. .....|... ++++.|| +|+.....+. |+ .++.+...
T Consensus 135 ---~l~~~l~~---~~--~~~~~p~~~----~~~~~~~----------------id~~~~~~~~-----~~-~~~~~~~~ 180 (668)
T PRK12740 135 ---QLQEKLGA---PV--VPLQLPIGE----GDDFTGV----------------VDLLSMKAYR-----YD-EGGPSEEI 180 (668)
T ss_pred ---HHHHHHCC---Cc--eeEEecccC----CCCceEE----------------EECccceEEE-----ec-CCCeeEEe
Confidence 33333221 00 011122211 2334444 2222222222 33 23333332
Q ss_pred CCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-hhhccc----------h
Q 003378 253 NTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA----------S 321 (824)
Q Consensus 253 ~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~----------~ 321 (824)
+ .+..+.+++.+++++|++.+++.|++++++||++ ++++.+++.. .+.+.+. ++|+|+ +
T Consensus 181 ~-----~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~--~~l~~~~~~~---~~~~~~~~~~~~Pv~~gSA~~~~Gv 250 (668)
T PRK12740 181 E-----IPAELLDRAEEAREELLEALAEFDDELMEKYLEG--EELSEEEIKA---GLRKATLAGEIVPVFCGSALKNKGV 250 (668)
T ss_pred c-----CCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCC--CCCCHHHHHH---HHHHHHHcCCEEEEEeccccCCccH
Confidence 2 2356778899999999999999999999999987 7889988863 3444433 689998 8
Q ss_pred HHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEEeeeecCCCEE
Q 003378 322 SALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKV 401 (824)
Q Consensus 322 ~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v 401 (824)
+.|||+|++++|+|.+++.+. +. .........|++++|++|+|||++++++.|. ++|+|||||+|++||.|
T Consensus 251 ~~LLd~i~~~lPsp~~~~~~~------~~--~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~-i~~~RV~sG~L~~g~~v 321 (668)
T PRK12740 251 QRLLDAVVDYLPSPLEVPPVD------GE--DGEEGAELAPDPDGPLVALVFKTMDDPFVGK-LSLVRVYSGTLKKGDTL 321 (668)
T ss_pred HHHHHHHHHHCCChhhccccc------CC--CCccccccccCCCCCeEEEEEEeeecCCCCc-EEEEEEeeeEEcCCCEE
Confidence 999999999999998765421 11 0112244678999999999999999998886 99999999999999999
Q ss_pred EEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCCCccccccccccCCce
Q 003378 402 RIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRAMKFSVSPV 480 (824)
Q Consensus 402 ~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv 480 (824)
++.+ ++++ ++|++|+.++|++.+++++|.|||||++.|++.. .+| ||++... ...++++.++ +|+
T Consensus 322 ~~~~----~~~~-----~~i~~l~~l~g~~~~~v~~~~aGdI~~i~gl~~~--~~Gdtl~~~~~--~~~~~~~~~~-~P~ 387 (668)
T PRK12740 322 YNSG----TGKK-----ERVGRLYRMHGKQREEVDEAVAGDIVAVAKLKDA--ATGDTLCDKGD--PILLEPMEFP-EPV 387 (668)
T ss_pred EeCC----CCCc-----EEecceeeecCCCccccCccCCCCEEEEeccCcc--CCCCEEeCCCC--ccccCCCCCC-Ccc
Confidence 9753 2222 7999999999999999999999999999999865 678 9987665 5677788876 999
Q ss_pred EEEEEEeCCCCCHhHHHHHHHHHHhcCCceEEEec-CCCcEEEEecchHHHHHHHHHHHhhccCCeEEEEeCCeEeEEec
Q 003378 481 VRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRET 559 (824)
Q Consensus 481 ~~~aVep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~il~g~GElHLei~~~rL~~~~~~~v~v~~s~p~V~yrET 559 (824)
++++|+|.++.|.++|.+||++|+++||+|+|..+ ++||++|+||||||||+|++||+++| ++++.+++|+|+||||
T Consensus 388 ~~~~i~p~~~~d~~~L~~aL~~l~~~Dpsl~v~~~~~~ge~~l~g~GelhLei~~~~L~~~~--~~~v~~~~p~V~yrEt 465 (668)
T PRK12740 388 ISLAIEPKDKGDEEKLSEALGKLAEEDPTLRVERDEETGQTILSGMGELHLDVALERLKREY--GVEVETGPPQVPYRET 465 (668)
T ss_pred eEEEEEECCcchHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHh--CceeEecCCeeEEeec
Confidence 99999999999999999999999999999999997 89999999999999999999999999 9999999999999999
Q ss_pred ccccccceeeee----cCCCeeEEEEEEeeCchhhhhhhcCCcCCCCCChhhHHHhhhhhcCCchhccCeEEEeccCCCC
Q 003378 560 VLEKSCRTVMSK----SPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIG 635 (824)
Q Consensus 560 i~~~~~~~~~~~----~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gp~~~g 635 (824)
|.++++...... ..+++..++++++|++.+ .
T Consensus 466 i~~~~~~~~~~~~~~~~~~~~~~v~l~~ep~~~~---------------------------------------------~ 500 (668)
T PRK12740 466 IRKKAEGHGRHKKQSGGHGQFGDVWLEVEPLPRG---------------------------------------------E 500 (668)
T ss_pred cCCCccccceeccccCCCCceEEEEEEEEECCCC---------------------------------------------C
Confidence 998764321111 223445788888887632 1
Q ss_pred CceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCcceeEEEEeeeeecc-cccccCCCChHHHHHHHHHHHHHhcC
Q 003378 636 PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQLTAK 714 (824)
Q Consensus 636 ~n~~~~~~~g~~~~~~~~~~i~~Gf~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~~a~~~a~ 714 (824)
++.|.+.+.++.++++|++||++||++|+++|||||+||+||+|+|+++.+|. |+ ..++|+.|+++||++|+++|+
T Consensus 501 ~~~f~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g~p~~~v~v~l~~~~~~~~~s---~~~~~~~a~~~a~~~a~~~a~ 577 (668)
T PRK12740 501 GFEFVDKVVGGAVPRQYIPAVEKGVREALEKGVLAGYPVVDVKVTLTDGSYHSVDS---SEMAFKIAARLAFREALPKAK 577 (668)
T ss_pred ceEEeecccCCCccHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEecccccCCC---CHHHHHHHHHHHHHHHHHhcC
Confidence 25566777788899999999999999999999999999999999999999996 43 344688999999999999999
Q ss_pred Cccccc-----------cccchheccccccceeeeeeccCCCCceEEEEEechhhhcCchHHHhhhCCCceEeEeEecce
Q 003378 715 PRLLEP-----------ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHW 783 (824)
Q Consensus 715 ~~LlEP-----------~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y 783 (824)
|+|||| ++|+|+++|++|||+|++++..++ .+.|+|++|++|||||+++||++|+|+|+|+++|+||
T Consensus 578 ~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~--~~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y 655 (668)
T PRK12740 578 PVLLEPIMKVEVSVPEEFVGDVIGDLSSRRGRILGMESRGG--GDVVRAEVPLAEMFGYATDLRSLTQGRGSFSMEFSHY 655 (668)
T ss_pred CeeecceEEEEEEechhhhhhHHHHHHhCCCeEeccccCCC--CEEEEEEcCHHHhhchHHHHHHhcCCeEEEEEEeccc
Confidence 999999 999999999999999999987664 3899999999999999999999999999999999999
Q ss_pred eecCCCCCCCchHHHHHH
Q 003378 784 DMMSSDPLEPGSQASQLV 801 (824)
Q Consensus 784 ~~v~~~~~~~~~~a~~~i 801 (824)
+++|+++ +++++
T Consensus 656 ~~~~~~~------~~~~~ 667 (668)
T PRK12740 656 EEVPGNV------AEKVI 667 (668)
T ss_pred ccCCHHH------HHHHh
Confidence 9999875 66654
No 15
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.2e-92 Score=731.41 Aligned_cols=644 Identities=25% Similarity=0.343 Sum_probs=507.9
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCc----eeecCChhhHhHhccceeeceEEEEEeechhhhhccccc
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGD----VRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~----~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (824)
.+|+| ++|+|+||||.++++||.+|.+.. .|. .+++|+...||+|||||.++.+.|.|+
T Consensus 38 rnigi---iahidagktttterily~ag~~~s--~g~vddgdtvtdfla~erergitiqsaav~fdwk------------ 100 (753)
T KOG0464|consen 38 RNIGI---IAHIDAGKTTTTERILYLAGAIHS--AGDVDDGDTVTDFLAIERERGITIQSAAVNFDWK------------ 100 (753)
T ss_pred hccee---EEEecCCCchhHHHHHHHhhhhhc--ccccCCCchHHHHHHHHHhcCceeeeeeeecccc------------
Confidence 47888 999999999999999999999877 454 368999999999999999999999997
Q ss_pred cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCHH
Q 003378 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGE 164 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~ 164 (824)
+|+||+||||||+||.-|+++++|+.||+|.|+|++.||++||.++|+|+.+.++|.+.|+||||+. .++.
T Consensus 101 ----g~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~----~anf- 171 (753)
T KOG0464|consen 101 ----GHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKL----AANF- 171 (753)
T ss_pred ----cceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhh----hhhh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 8874
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccc-eeeehhhHHHHhhhhcCCChHHHHHHhhcCcccC
Q 003378 165 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHG-WAFTLTNFAKMYASKFGVDESKMMERLWGENFFD 243 (824)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g-~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~~ 243 (824)
+..++.+...+. ..|.+-++|++.+... -+| +|+..-.+.+|+-+.-|
T Consensus 172 ------e~avdsi~ekl~-----------ak~l~l~lpi~eak~fnkg~--------------ldil~ke~l~~ncnsnd 220 (753)
T KOG0464|consen 172 ------ENAVDSIEEKLG-----------AKALKLQLPIGEAKGFNKGF--------------LDILHKEKLLGNCNSND 220 (753)
T ss_pred ------hhHHHHHHHHhC-----------CceEEEEecccccccccchH--------------HHHHHHhhccCCCCCCc
Confidence 444444444442 1344557788776211 011 45544445667422212
Q ss_pred CCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCC---CCHHHHHHhHHHHHHH-HHhhhcc
Q 003378 244 PATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVT---MKSEEKELMGKALMKR-VMQTWLP 319 (824)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~---l~~~el~~~~~~l~~~-i~~~~~P 319 (824)
++.|...|- ...-.++..+...+....|.+.+++.|++...++|+++... ++.++++ .++.+- +.++..|
T Consensus 221 --gkd~e~~pl-le~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~d~i~a~elk---sai~~lt~aq~a~~ 294 (753)
T KOG0464|consen 221 --GKDFENKPL-LEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENFDKIDAEELK---SAIHELTCAQKAAP 294 (753)
T ss_pred --cccccCCcc-cccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhccccccCHHHHH---HHHHHHhhhhhhcc
Confidence 233554441 11123555666777788999999999999999999887543 6677775 234332 3367777
Q ss_pred c----------hHHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEE
Q 003378 320 A----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGR 389 (824)
Q Consensus 320 ~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~R 389 (824)
+ +|+|||++.-|+|||.|++ |.+-.||. ..++|+.||+.++..+|+ ++|.|
T Consensus 295 i~cgsaiknkgiqplldavtmylpspeern-yeflqwyk-----------------ddlcalafkvlhdkqrg~-l~fmr 355 (753)
T KOG0464|consen 295 ILCGSAIKNKGIQPLLDAVTMYLPSPEERN-YEFLQWYK-----------------DDLCALAFKVLHDKQRGP-LSFMR 355 (753)
T ss_pred eehhhhhcccCccchhhhhhhccCChhhcc-hHHHhhhh-----------------hhHHHHhhhhhcccccCc-eeEEE
Confidence 5 7999999999999998875 44555554 347899999999999998 99999
Q ss_pred EEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCC---
Q 003378 390 VFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEV--- 465 (824)
Q Consensus 390 V~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~--- 465 (824)
||||+|+++..+++.+.+ . ++++.+++.+.++++.+|+++.||+|....||+.. .|| |+.+++.+
T Consensus 356 iysgsi~~~~ai~nin~~----~-----se~~~kl~~pfade~~~i~qlsagnialt~glk~t--atgdtivaskasa~a 424 (753)
T KOG0464|consen 356 IYSGSIHNNLAIFNINGM----C-----SEGILKLFLPFADEHREIEQLSAGNIALTAGLKHT--ATGDTIVASKASAEA 424 (753)
T ss_pred EecccccCceeeeecccc----c-----ccchHhhhccchhhhhhhhhcccccEEEEecceee--ccCCeEEecchhHHH
Confidence 999999999999965322 2 37999999999999999999999999999999987 678 87665431
Q ss_pred -------------------CccccccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCceEEEec-CCCcEEEEec
Q 003378 466 -------------------DAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGA 525 (824)
Q Consensus 466 -------------------~~~~~~~~~~~~~Pv~~~aVep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~il~g~ 525 (824)
+...|.++..| .|||+|.|||.+...++.+..||+.|.+||||++++.+ ++||+++.||
T Consensus 425 a~qk~~~egekk~~q~~daerll~agie~p-d~vffc~iepps~~k~~d~ehale~lqredpslkir~d~dsgqtil~~~ 503 (753)
T KOG0464|consen 425 AAQKAAGEGEKKHLQNKDAERLLFAGIEIP-DAVFFCCIEPPSLRKLNDFEHALECLQREDPSLKIRFDPDSGQTILCGM 503 (753)
T ss_pred HHHHhhccchhhccCCccccceeeecccCC-CceEEEeccCcccccchhHHHHHHHHhccCCceeEEecCCCCceEEecc
Confidence 12335566665 99999999999999999999999999999999999998 9999999999
Q ss_pred chHHHHHHHHHHHhhccCCeEEEEeCCeEeEEecccccccceeee---ecCCCee-EEEEEEeeCchhhhhhhcCCcCCC
Q 003378 526 GELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMS---KSPNKHN-RLYMEARPLEEGLAEAIDDGRIGP 601 (824)
Q Consensus 526 GElHLei~~~rL~~~~~~~v~v~~s~p~V~yrETi~~~~~~~~~~---~~~~~~~-~~~~~~ePl~~~~~~~i~~g~~~~ 601 (824)
||||+|++.+|++++| |+++-+++.+|+|||+|.+....+... -+..+|- -+.++++|.+. +-.+|.
T Consensus 504 gelhie~ihdrikrey--~ldtfig~lqvayre~i~~~lr~t~~ld~~lgdkk~~~~velear~~~t-------qa~ip~ 574 (753)
T KOG0464|consen 504 GELHIEAIHDRIKREY--GLDTFIGKLQVAYREMILEELRATAKLDDGLGDKKHLEFVELEARLEET-------QAHIPF 574 (753)
T ss_pred chhhHHHHHHHHHhhc--CchheehhHHHHHHHHHHHHhhhhhhhhccccccccceEEEEEeeeccc-------cccccc
Confidence 9999999999999999 999999999999999998864332111 1222221 12233333211 001110
Q ss_pred CCChhhHHHhhhhhcCCchhccCeEEEeccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCcceeEEEE
Q 003378 602 RDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEV 681 (824)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~gp~~~g~n~~~~~~~g~~~~~~~~~~i~~Gf~~a~~~Gpl~~~pv~~v~v~l 681 (824)
+ +|- |+ +... .....+.--+.||+.|...||..|||+|+|+++|+++|
T Consensus 575 k----------------------kie-fe--------~~es-~n~~~l~~sqeaie~g~~na~~~gpl~g~pi~~v~itl 622 (753)
T KOG0464|consen 575 K----------------------KIE-FE--------LAES-ANEGLLDVSQEAIEEGCHNACLNGPLAGSPIHAVAITL 622 (753)
T ss_pred e----------------------eEE-ee--------cccc-ccchhhhhHHHHHHhhHHHHHhcCCccCCchhheeEee
Confidence 0 000 00 0000 00112232367999999999999999999999999999
Q ss_pred eeeeecccccccCCCChHHHHHHHHHHHHHhcCCccccc------------cccchheccccccceeeeeeccCCCCceE
Q 003378 682 CDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEP------------ALGGIYSVLNQKRGHVFEEMQRPGTPLYN 749 (824)
Q Consensus 682 ~d~~~~~ds~~~~~~~~~~a~~~a~~~a~~~a~~~LlEP------------~~g~v~~~L~~RRg~i~~~~~~~g~~~~~ 749 (824)
+.+.+|.... .+..+.+|+.+|+.+|+++|.-+|+|| ++..|+++|.+|||.+.+.+..+.+....
T Consensus 623 ~~~~i~~gk~--n~alisac~qkcvqealkkad~~l~eplm~lei~i~~dd~~qpiladl~qrr~~~e~~~aredneirr 700 (753)
T KOG0464|consen 623 HECIIHGGKI--NPALISACAQKCVQEALKKADKQLLEPLMELEIEIANDDPLQPILADLAQRRAHFEEIDAREDNEIRR 700 (753)
T ss_pred EEEEecCCcC--CHHHHHHHHHHHHHHHHhhhhHHHhhhhhheEEEEecCCCccHHHHHHHHhhccchhcccccccchhe
Confidence 9999996422 233456789999999999999999999 88999999999999999998877656678
Q ss_pred EEEEechhhhcCchHHHhhhCCCceEeEeEecceeecCCC
Q 003378 750 IKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSD 789 (824)
Q Consensus 750 I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~ 789 (824)
|.|.+|++|..||++.||.+|||.|.|.++|++|+.+.+.
T Consensus 701 i~~~lplaei~~~s~~lrtltsg~a~~ale~~~yqamn~~ 740 (753)
T KOG0464|consen 701 ICAFLPLAEIEGLSKTLRTLTSGFADFALEFRGYQAMNEH 740 (753)
T ss_pred eeEeeeHHHhhcHHHHHHHHhcccceEEEEecchhhcChH
Confidence 9999999999999999999999999999999999999885
No 16
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=5.2e-73 Score=657.14 Aligned_cols=463 Identities=24% Similarity=0.427 Sum_probs=384.8
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
.||+| +||+|||||||+++|++.+|.+.....-..+++|+.++|++||+|+.++..++.|+
T Consensus 2 RNIaI---iGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~---------------- 62 (594)
T TIGR01394 2 RNIAI---IAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYN---------------- 62 (594)
T ss_pred cEEEE---EcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEEC----------------
Confidence 47899 99999999999999999999887632223468999999999999999999999996
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCHHHHHH
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 168 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~ 168 (824)
+++|||||||||.||..++.++++.+|+||+|||+.+|+..||+.+|..+.+.++|+|+|+||||+. +++++++.+
T Consensus 63 ~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~----~a~~~~v~~ 138 (594)
T TIGR01394 63 GTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRP----SARPDEVVD 138 (594)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCC----CcCHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999998 777666665
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcccCCCCCc
Q 003378 169 TFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRK 248 (824)
Q Consensus 169 ~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~~~~~~~ 248 (824)
.+.+.+..+.. .++ -...++.++|+..||++... +.
T Consensus 139 ei~~l~~~~g~-----~~e--------~l~~pvl~~SA~~g~~~~~~---------------------------~~---- 174 (594)
T TIGR01394 139 EVFDLFAELGA-----DDE--------QLDFPIVYASGRAGWASLDL---------------------------DD---- 174 (594)
T ss_pred HHHHHHHhhcc-----ccc--------cccCcEEechhhcCcccccC---------------------------cc----
Confidence 55555443211 000 00114667788777743000 00
Q ss_pred eeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhhhccchHHHHHHH
Q 003378 249 WTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEMM 328 (824)
Q Consensus 249 ~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~i 328 (824)
. . . .+.+||+++
T Consensus 175 -------------------------------~-----------~--~------------------------gi~~Lld~I 186 (594)
T TIGR01394 175 -------------------------------P-----------S--D------------------------NMAPLFDAI 186 (594)
T ss_pred -------------------------------c-----------c--c------------------------CHHHHHHHH
Confidence 0 0 0 125789999
Q ss_pred HhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEEcCCCC
Q 003378 329 IFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNY 408 (824)
Q Consensus 329 ~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~~~~~ 408 (824)
++++|+|. .++++||+++|||++.+++.|+ ++++||+||+|++||.|++.+.+
T Consensus 187 v~~lP~P~-------------------------~~~~~pl~~~V~~i~~d~~~Gr-v~~gRV~sG~lk~G~~V~~~~~~- 239 (594)
T TIGR01394 187 VRHVPAPK-------------------------GDLDEPLQMLVTNLDYDEYLGR-IAIGRVHRGTVKKGQQVALMKRD- 239 (594)
T ss_pred HHhCCCCC-------------------------CCCCCCEEEEEEEEEeeCCCce-EEEEEEEeCEEccCCEEEEecCC-
Confidence 99999993 1356899999999999999997 99999999999999999976421
Q ss_pred CCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCCCccccccccccCCceEEEEEEe
Q 003378 409 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQC 487 (824)
Q Consensus 409 ~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~aVep 487 (824)
+. ...++|++|+.+.|.+..++++|.|||||++.|+++. ++| |||+... +.+++++.++ +|+++++++|
T Consensus 240 --~~---~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~gl~~i--~~Gdtl~~~~~--~~~l~~~~~~-~P~~~~~~~~ 309 (594)
T TIGR01394 240 --GT---IENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDI--NIGETIADPEV--PEALPTITVD-EPTLSMTFSV 309 (594)
T ss_pred --Cc---eeEEEEEEEEEccCCCceECCEECCCCEEEEeCCccc--CCCCEEeCCCc--cccCCCCCCC-CCeEEEEEEe
Confidence 11 1237999999999999999999999999999999887 788 9999877 6778888876 9999999999
Q ss_pred CCC---CCHhH------HHHHHHHHHhcCCceEEEec-CCCcEEEEecchHHHHHHHHHHHhhccCCeEEEEeCCeEeEE
Q 003378 488 KVA---SDLPK------LVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFR 557 (824)
Q Consensus 488 ~~~---~d~~k------L~~aL~~L~~eDPsl~v~~~-etge~il~g~GElHLei~~~rL~~~~~~~v~v~~s~p~V~yr 557 (824)
.+. .+..| |.++|.++.++||+|+|+.+ +++|++|+|||||||+|++++|+++ |+|+.+++|+|+||
T Consensus 310 ~~~p~~~~e~k~~t~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrre---g~e~~~~~P~V~yr 386 (594)
T TIGR01394 310 NDSPLAGKEGKKVTSRHIRDRLMRELETNVALRVEDTESADKFEVSGRGELHLSILIETMRRE---GFELQVGRPQVIYK 386 (594)
T ss_pred cCCCcccccchhhhHHHHHHHHHHhhccCCeEEEEEecCCCeEEEEEECHHHHHHHHHHHhcc---CceEEEeCCEEEEE
Confidence 754 44444 99999999999999999987 8999999999999999999999997 99999999999999
Q ss_pred ecccccccceeeeecCCCeeEEEEEEeeCchhhhhhhcCCcCCCCCChhhHHHhhhhhcCCchhccCeEEEeccCCCCCc
Q 003378 558 ETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPN 637 (824)
Q Consensus 558 ETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gp~~~g~n 637 (824)
| |.+ ..+||
T Consensus 387 e-i~g------------------~llEP---------------------------------------------------- 395 (594)
T TIGR01394 387 E-IDG------------------KKLEP---------------------------------------------------- 395 (594)
T ss_pred e-CCC------------------eEECC----------------------------------------------------
Confidence 9 632 11222
Q ss_pred eEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCcceeEEEEeeeeecccccccCCCChHHHHHHHHHHHHHhcCCcc
Q 003378 638 MVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRL 717 (824)
Q Consensus 638 ~~~~~~~g~~~~~~~~~~i~~Gf~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~a~~~a~~~L 717 (824)
+..+.|.+-+
T Consensus 396 ------------------------------------i~~~~i~vp~---------------------------------- 405 (594)
T TIGR01394 396 ------------------------------------IEELTIDVPE---------------------------------- 405 (594)
T ss_pred ------------------------------------EEEEEEEech----------------------------------
Confidence 2222222111
Q ss_pred ccccccchheccccccceeeeeeccCCCCceEEEEEechhhhcCchHHHhhhCCCceEeEeEecceeecCCCC
Q 003378 718 LEPALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDP 790 (824)
Q Consensus 718 lEP~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~ 790 (824)
-|+|+|+++|++|||++++++..++ ++..|+|.+|++|++||.++|||+|+|+|+|+++|+||+++|++.
T Consensus 406 --e~~G~v~~~l~~RrG~~~~~~~~~~-~~~~i~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~~~i 475 (594)
T TIGR01394 406 --EHVGAVIEKLGKRKGEMVDMEPSGN-GRTRLEFKIPSRGLIGFRTEFLTDTRGTGIMNHVFDEYEPWKGEI 475 (594)
T ss_pred --HHHHHHHHHHHHhCCEEeccEECCC-CEEEEEEEeChHHhhhHHHHHHhhcCCeEEEEEEeccceeCCCcC
Confidence 0788999999999999999998543 588999999999999999999999999999999999999999875
No 17
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=1.8e-71 Score=642.65 Aligned_cols=463 Identities=24% Similarity=0.421 Sum_probs=385.6
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
-.+|+| +||+|||||||+++|++.+|.+........+++|+.++|++||+|+.+...++.|.
T Consensus 5 iRnIaI---iGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~--------------- 66 (607)
T PRK10218 5 LRNIAI---IAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWN--------------- 66 (607)
T ss_pred ceEEEE---ECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecC---------------
Confidence 468999 99999999999999999999886632223479999999999999999999999886
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCHHHHH
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAY 167 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~ 167 (824)
++++||||||||.+|..++.++++.+|++|+|||+.+|++.||+.+|+.+...++|+|+|+||||+. +++++++.
T Consensus 67 -~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~----~a~~~~vl 141 (607)
T PRK10218 67 -DYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRP----GARPDWVV 141 (607)
T ss_pred -CEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCC----CCchhHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 88877776
Q ss_pred HHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcccCCCCC
Q 003378 168 QTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATR 247 (824)
Q Consensus 168 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~~~~~~ 247 (824)
+.+.+.+..+... + .....+|.++|+..||+- ++...
T Consensus 142 ~ei~~l~~~l~~~-----~--------~~~~~PVi~~SA~~G~~~--------------~~~~~---------------- 178 (607)
T PRK10218 142 DQVFDLFVNLDAT-----D--------EQLDFPIVYASALNGIAG--------------LDHED---------------- 178 (607)
T ss_pred HHHHHHHhccCcc-----c--------cccCCCEEEeEhhcCccc--------------CCccc----------------
Confidence 6666655432111 0 001125777888877742 00000
Q ss_pred ceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhhhccchHHHHHH
Q 003378 248 KWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEM 327 (824)
Q Consensus 248 ~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~ 327 (824)
. .+ .+.+|||+
T Consensus 179 ---------------------------------~--------~~----------------------------~i~~Lld~ 189 (607)
T PRK10218 179 ---------------------------------M--------AE----------------------------DMTPLYQA 189 (607)
T ss_pred ---------------------------------c--------cc----------------------------chHHHHHH
Confidence 0 00 12578999
Q ss_pred HHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEEcCCC
Q 003378 328 MIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPN 407 (824)
Q Consensus 328 i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~~~~ 407 (824)
|++++|+|. +++++||.++|||++.+++.|+ ++++|||||+|+.||.|++....
T Consensus 190 Ii~~iP~P~-------------------------~~~~~Pl~~~V~k~~~d~~~G~-i~~gRV~sG~lk~Gd~v~~~~~~ 243 (607)
T PRK10218 190 IVDHVPAPD-------------------------VDLDGPFQMQISQLDYNSYVGV-IGIGRIKRGKVKPNQQVTIIDSE 243 (607)
T ss_pred HHHhCCCCC-------------------------CCCCCCeEEEEEeeEecCCCcE-EEEEEEEeCcCcCCCEEEEecCC
Confidence 999999993 2457899999999999999997 99999999999999999975321
Q ss_pred CCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCCCccccccccccCCceEEEEEE
Q 003378 408 YVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQ 486 (824)
Q Consensus 408 ~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~aVe 486 (824)
+. ...+||++||.++|.+..++++|.|||||++.|+++. .+| |||+... +.+++.+.++ +|++++++.
T Consensus 244 ---~~---~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~--~~GdTl~~~~~--~~~l~~~~~~-~P~~~~~~~ 312 (607)
T PRK10218 244 ---GK---TRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGEL--NISDTVCDTQN--VEALPALSVD-EPTVSMFFC 312 (607)
T ss_pred ---Cc---EeeEEEEEEEEEecCCceECCEEcCCCEEEEECcccc--ccCcEEecCCC--cccCCCCCCC-CCeEEEEEE
Confidence 11 1137999999999999999999999999999999987 788 9998776 6677788876 999999999
Q ss_pred eCC---CCCHhHHHH---HHHHHHh---cCCceEEEec-CCCcEEEEecchHHHHHHHHHHHhhccCCeEEEEeCCeEeE
Q 003378 487 CKV---ASDLPKLVE---GLKRLAK---SDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSF 556 (824)
Q Consensus 487 p~~---~~d~~kL~~---aL~~L~~---eDPsl~v~~~-etge~il~g~GElHLei~~~rL~~~~~~~v~v~~s~p~V~y 556 (824)
|.+ ..|+.|+.. +|++|.+ +||+|+|+.+ +++|++|+|+|||||+|++++|+++ |+|+.+++|+|+|
T Consensus 313 ~~~sp~~g~e~k~~t~~~~~~rL~~~~~~D~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrre---g~e~~~~~P~V~y 389 (607)
T PRK10218 313 VNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRRE---GFELAVSRPKVIF 389 (607)
T ss_pred eCCCccccchhhhhhHHHHHHHHHHhhCCCCeEEEEEcCCCCeEEEEEEcHHHHHHHHHHHHhC---CceEEEeCCEEEE
Confidence 999 889999865 5666666 9999999987 8999999999999999999999998 9999999999999
Q ss_pred EecccccccceeeeecCCCeeEEEEEEeeCchhhhhhhcCCcCCCCCChhhHHHhhhhhcCCchhccCeEEEeccCCCCC
Q 003378 557 RETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGP 636 (824)
Q Consensus 557 rETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gp~~~g~ 636 (824)
||| + . + + .
T Consensus 390 ret--~-g----------~--k----l----------------------------------------------------- 397 (607)
T PRK10218 390 REI--D-G----------R--K----Q----------------------------------------------------- 397 (607)
T ss_pred EEE--C-C----------E--E----e-----------------------------------------------------
Confidence 998 1 0 0 1 2
Q ss_pred ceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCcceeEEEEeeeeecccccccCCCChHHHHHHHHHHHHHhcCCc
Q 003378 637 NMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPR 716 (824)
Q Consensus 637 n~~~~~~~g~~~~~~~~~~i~~Gf~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~a~~~a~~~ 716 (824)
||+..+.+.+-+-
T Consensus 398 -----------------------------------EPi~~v~i~vP~e-------------------------------- 410 (607)
T PRK10218 398 -----------------------------------EPYENVTLDVEEQ-------------------------------- 410 (607)
T ss_pred -----------------------------------CCeEEEEEEechh--------------------------------
Confidence 3333333332110
Q ss_pred cccccccchheccccccceeeeeeccCCCCceEEEEEechhhhcCchHHHhhhCCCceEeEeEecceeecC-CC
Q 003378 717 LLEPALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMS-SD 789 (824)
Q Consensus 717 LlEP~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~-~~ 789 (824)
|+|+|+++|++|||++++++..++ ++..|+|.+|++|++||.++|||+|+|+|+|++.|+||+++| |+
T Consensus 411 ----~~G~V~~~l~~RrG~~~~m~~~~~-~~~~l~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~~g~ 479 (607)
T PRK10218 411 ----HQGSVMQALGERKGDLKNMNPDGK-GRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPGE 479 (607)
T ss_pred ----hHHHHHHHHHhcCCEEeccEECCC-CEEEEEEEcCHHHHhhHHHHhhhhCCCeEEEEEEecCccCCCCCC
Confidence 788999999999999999997543 589999999999999999999999999999999999999999 55
No 18
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=1.1e-69 Score=631.84 Aligned_cols=473 Identities=26% Similarity=0.412 Sum_probs=381.4
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
.-.||+| +||+|||||||+++|++.+|.++....+ .+++|+.++|++||+|+++..+++.|.. .+
T Consensus 6 ~iRNi~I---iGhvd~GKTTL~~rLl~~tg~i~~~~~~-~~~lD~~~~ErerGiTi~~~~v~~~~~~-----------~d 70 (600)
T PRK05433 6 NIRNFSI---IAHIDHGKSTLADRLIELTGTLSEREMK-AQVLDSMDLERERGITIKAQAVRLNYKA-----------KD 70 (600)
T ss_pred cCCEEEE---ECCCCCCHHHHHHHHHHhcCCCcccccc-cccccCchHHhhcCCcccccEEEEEEEc-----------cC
Confidence 3468999 9999999999999999999998774333 5799999999999999999999998852 13
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCHHHH
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 166 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~ 166 (824)
++++.+||||||||.||..++.++++.+|++|+|||+++|++.||...|..+...++|+|+|+||+|+. +++.+++
T Consensus 71 g~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~----~a~~~~v 146 (600)
T PRK05433 71 GETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLP----AADPERV 146 (600)
T ss_pred CCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC----cccHHHH
Confidence 457899999999999999999999999999999999999999999999999988999999999999998 6664433
Q ss_pred HHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcccCCCC
Q 003378 167 YQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPAT 246 (824)
Q Consensus 167 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~~~~~ 246 (824)
.+.+++ .+.. .+ ..+..+|+..|+
T Consensus 147 ~~ei~~-------~lg~-----------~~--~~vi~iSAktG~------------------------------------ 170 (600)
T PRK05433 147 KQEIED-------VIGI-----------DA--SDAVLVSAKTGI------------------------------------ 170 (600)
T ss_pred HHHHHH-------HhCC-----------Cc--ceEEEEecCCCC------------------------------------
Confidence 222221 1110 00 012333332111
Q ss_pred CceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhhhccchHHHHH
Q 003378 247 RKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLE 326 (824)
Q Consensus 247 ~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd 326 (824)
| +..||+
T Consensus 171 -----------------------------------------------G--------------------------I~~Ll~ 177 (600)
T PRK05433 171 -----------------------------------------------G--------------------------IEEVLE 177 (600)
T ss_pred -----------------------------------------------C--------------------------HHHHHH
Confidence 0 246788
Q ss_pred HHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEEcCC
Q 003378 327 MMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGP 406 (824)
Q Consensus 327 ~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~~~ 406 (824)
++++++|+|. .++++|+.++|||++.+++.|. ++++||++|+|++||.|++..
T Consensus 178 ~I~~~lp~P~-------------------------~~~~~pl~~~Vfd~~~d~~~G~-v~~~rV~sG~Lk~Gd~i~~~~- 230 (600)
T PRK05433 178 AIVERIPPPK-------------------------GDPDAPLKALIFDSWYDNYRGV-VVLVRVVDGTLKKGDKIKMMS- 230 (600)
T ss_pred HHHHhCcccc-------------------------CCCCCCceEEEEEEEecCCCce-EEEEEEEcCEEecCCEEEEec-
Confidence 8888999983 1356899999999999999997 999999999999999999653
Q ss_pred CCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEe-cc---ccccccce-eeecCCCCCccccccccccCCceE
Q 003378 407 NYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-GL---DQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVV 481 (824)
Q Consensus 407 ~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~-gl---~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~ 481 (824)
++.. ++|.+|+.+.+ +..+++++.||||+++. |+ ++. ++| ||++.......+++++.++ +|++
T Consensus 231 ---~~~~-----~~V~~i~~~~~-~~~~v~~~~aGdIg~i~~~ik~~~~~--~~Gdtl~~~~~~~~~~l~~~~~~-~P~v 298 (600)
T PRK05433 231 ---TGKE-----YEVDEVGVFTP-KMVPVDELSAGEVGYIIAGIKDVRDA--RVGDTITLAKNPAEEPLPGFKEV-KPMV 298 (600)
T ss_pred ---CCce-----EEEEEeeccCC-CceECcEEcCCCEEEEeccccccccc--CCCCEEECCCCccccCCCCCCCC-CcEE
Confidence 2332 79999996665 88999999999998885 44 444 788 9988765111467777775 9999
Q ss_pred EEEEEeCCCCCHhHHHHHHHHHHhcCCceEEEecCCCcEEEEe-----cchHHHHHHHHHHHhhccCCeEEEEeCCeEeE
Q 003378 482 RVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAG-----AGELHLEICLKDLQDDFMGGAEIIKSDPVVSF 556 (824)
Q Consensus 482 ~~aVep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g-----~GElHLei~~~rL~~~~~~~v~v~~s~p~V~y 556 (824)
+++|+|.+..|.++|.+||++|+.+||||.+. .+|+|.+++| ||+|||||+++||+++| ++++.+++|.|+|
T Consensus 299 ~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~-~e~~~~l~~g~r~gf~G~lHlev~~erL~~e~--~~~v~~~~P~V~Y 375 (600)
T PRK05433 299 FAGLYPVDSDDYEDLRDALEKLQLNDASLTYE-PETSQALGFGFRCGFLGLLHMEIIQERLEREF--DLDLITTAPSVVY 375 (600)
T ss_pred EEEEEECCccCHHHHHHHHHHHHHhCCeEEEE-ecCCcceecceEeecHHHHHHHHHHHHHHHhh--CceEEEecCEEEE
Confidence 99999999999999999999999999999997 6899999998 99999999999999999 9999999999999
Q ss_pred EecccccccceeeeecCCCeeEEEEEEeeCchhhhhhhcCCcCCCCCChhhHHHhhhhhcCCchhccCeEEEeccCCCCC
Q 003378 557 RETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGP 636 (824)
Q Consensus 557 rETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gp~~~g~ 636 (824)
||||.+.. . +.++
T Consensus 376 reti~~g~-----------~----~~~~---------------------------------------------------- 388 (600)
T PRK05433 376 EVTLTDGE-----------V----IEVD---------------------------------------------------- 388 (600)
T ss_pred EEEEeCCc-----------E----EEEE----------------------------------------------------
Confidence 99987521 0 0010
Q ss_pred ceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCcceeEEEEeeeeecccccccCCCChHHHHHHHHHHHHHhcCCc
Q 003378 637 NMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPR 716 (824)
Q Consensus 637 n~~~~~~~g~~~~~~~~~~i~~Gf~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~a~~~a~~~ 716 (824)
| | .|+| |+++.+ .
T Consensus 389 ----~--------------------------p-~~~p---------------ds~~~~---------------------~ 401 (600)
T PRK05433 389 ----N--------------------------P-SKLP---------------DPGKIE---------------------E 401 (600)
T ss_pred ----C--------------------------c-ccCC---------------Cccccc---------------------e
Confidence 0 1 1222 333221 6
Q ss_pred cccc-----------cccchheccccccceeeeeeccCCCCceEEEEEechhhh-cCchHHHhhhCCCceEeEeEeccee
Q 003378 717 LLEP-----------ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVES-FGFSSTLRAATSGQAFPQCVFDHWD 784 (824)
Q Consensus 717 LlEP-----------~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~ 784 (824)
|||| |+|+||+++++|||++++++..+ ++..|+|.+|++|+ ++|.++|||+|+|+|+|.++|+||+
T Consensus 402 llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~--~~~~i~~~~Pl~e~~~~~~~~Lks~T~G~gs~~~~~~~Y~ 479 (600)
T PRK05433 402 IEEPIVKATIIVPQEYVGAVMELCQEKRGVQKDMEYLG--NRVELTYELPLAEIVFDFFDRLKSVSRGYASLDYEFIGYR 479 (600)
T ss_pred EECCEEEEEEEecHHHHHHHHHHHHHcCCEEeCcEecC--CeEEEEEEechHHhhhhHHHHhHhhcCCEEEEEEEECCcc
Confidence 7888 99999999999999999999865 47899999999999 9999999999999999999999999
Q ss_pred ec---------CCCCCCC----------chHHHHHHHHHH
Q 003378 785 MM---------SSDPLEP----------GSQASQLVLDIR 805 (824)
Q Consensus 785 ~v---------~~~~~~~----------~~~a~~~i~~~r 805 (824)
+. .++|.|. .+.+++++.+.+
T Consensus 480 ~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 519 (600)
T PRK05433 480 ESDLVKLDILINGEPVDALSFIVHRDKAYERGRALVEKLK 519 (600)
T ss_pred cccEEEEEEEECCcccceeEEeeeHHHHHHHHHHHHHHHH
Confidence 85 4555552 346677776643
No 19
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=1.4e-68 Score=622.03 Aligned_cols=473 Identities=25% Similarity=0.399 Sum_probs=379.1
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
-.||+| +||+|||||||+++|++.+|.++....+ .+++|+.++|++||+|+.+..+++.|.. .++
T Consensus 3 iRNi~I---IGh~d~GKTTL~~rLl~~~g~i~~~~~~-~~~~D~~~~ErerGiTi~~~~v~~~~~~-----------~~g 67 (595)
T TIGR01393 3 IRNFSI---IAHIDHGKSTLADRLLEYTGAISEREMR-EQVLDSMDLERERGITIKAQAVRLNYKA-----------KDG 67 (595)
T ss_pred eeEEEE---ECCCCCCHHHHHHHHHHHcCCCcccccc-ccccCCChHHHhcCCCeeeeEEEEEEEc-----------CCC
Confidence 468999 9999999999999999999988764333 5789999999999999999999998851 123
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCHHHHH
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAY 167 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~ 167 (824)
+.+.++|||||||.||..++.++++.+|++|+|+|+++|++.||...|..+...++|+|+|+||+|+. +.+.++..
T Consensus 68 ~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~----~~~~~~~~ 143 (595)
T TIGR01393 68 ETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLP----SADPERVK 143 (595)
T ss_pred CEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCC----ccCHHHHH
Confidence 46899999999999999999999999999999999999999999999988888999999999999998 66543332
Q ss_pred HHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcccCCCCC
Q 003378 168 QTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATR 247 (824)
Q Consensus 168 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~~~~~~ 247 (824)
+.+.+ .+.. .+ ..+.+.|+..|+
T Consensus 144 ~el~~-------~lg~-----------~~--~~vi~vSAktG~------------------------------------- 166 (595)
T TIGR01393 144 KEIEE-------VIGL-----------DA--SEAILASAKTGI------------------------------------- 166 (595)
T ss_pred HHHHH-------HhCC-----------Cc--ceEEEeeccCCC-------------------------------------
Confidence 22221 1100 00 012223331110
Q ss_pred ceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhhhccchHHHHHH
Q 003378 248 KWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEM 327 (824)
Q Consensus 248 ~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~ 327 (824)
| ++.||+.
T Consensus 167 ----------------------------------------------G--------------------------I~~Lle~ 174 (595)
T TIGR01393 167 ----------------------------------------------G--------------------------IEEILEA 174 (595)
T ss_pred ----------------------------------------------C--------------------------HHHHHHH
Confidence 0 2467888
Q ss_pred HHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEEcCCC
Q 003378 328 MIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPN 407 (824)
Q Consensus 328 i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~~~~ 407 (824)
+++++|+|. .++++|+.++|||++.+++.|. ++++||++|+|++||.|++++
T Consensus 175 I~~~lp~p~-------------------------~~~~~pl~~~V~~~~~d~~~G~-v~~~rV~sG~lk~Gd~v~~~~-- 226 (595)
T TIGR01393 175 IVKRVPPPK-------------------------GDPDAPLKALIFDSHYDNYRGV-VALVRVFEGTIKPGDKIRFMS-- 226 (595)
T ss_pred HHHhCCCCC-------------------------CCCCCCeEEEEEEEEEeCCCcE-EEEEEEECCEEecCCEEEEec--
Confidence 888999983 1356899999999999999997 999999999999999999653
Q ss_pred CCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEe-cc---ccccccce-eeecCCCCCccccccccccCCceEE
Q 003378 408 YVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-GL---DQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVVR 482 (824)
Q Consensus 408 ~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~-gl---~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~ 482 (824)
.+.. ++|.+|+.+.+.. .+++++.||||+++. |+ ++. ++| ||++..+....+++++.++ +|+++
T Consensus 227 --~~~~-----~~v~~i~~~~~~~-~~v~~~~aGdIg~i~~~~~~~~~~--~~Gdtl~~~~~~~~~~l~~~~~~-~P~v~ 295 (595)
T TIGR01393 227 --TGKE-----YEVDEVGVFTPKL-TKTDELSAGEVGYIIAGIKDVSDV--RVGDTITHVKNPAKEPLPGFKEV-KPMVF 295 (595)
T ss_pred --CCCe-----eEEeEEEEecCCc-eECCEEcCCCEEEEeccccccCcc--CCCCEEECCCCccccCCCCCcCC-CcEEE
Confidence 2332 7999999777665 999999999998875 44 444 788 9988765111367777775 99999
Q ss_pred EEEEeCCCCCHhHHHHHHHHHHhcCCceEEEecCCCcEEEE-----ecchHHHHHHHHHHHhhccCCeEEEEeCCeEeEE
Q 003378 483 VAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIA-----GAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFR 557 (824)
Q Consensus 483 ~aVep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~-----g~GElHLei~~~rL~~~~~~~v~v~~s~p~V~yr 557 (824)
++|+|.+..|.++|.+||++|+.+||||.++. +|+|.+++ |||+|||||+++||+++| ++++.+++|+|+||
T Consensus 296 ~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~~-e~~~~l~~g~r~g~lG~lHlei~~erL~re~--~~~v~~~~P~V~Yr 372 (595)
T TIGR01393 296 AGLYPIDTEDYEDLRDALEKLKLNDASLTYEP-ESSPALGFGFRCGFLGLLHMEIIQERLEREF--NLDLITTAPSVIYR 372 (595)
T ss_pred EEEEECCcccHHHHHHHHHHHhccCCeEEEEe-cCCcccccccEEeeeeHHHHHHHHHHHHHHh--CCeeEEecCEEEEE
Confidence 99999999999999999999999999999974 78887777 599999999999999999 99999999999999
Q ss_pred ecccccccceeeeecCCCeeEEEEEEeeCchhhhhhhcCCcCCCCCChhhHHHhhhhhcCCchhccCeEEEeccCCCCCc
Q 003378 558 ETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPN 637 (824)
Q Consensus 558 ETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gp~~~g~n 637 (824)
|||.+.. .+.++
T Consensus 373 eti~~g~---------------~~~~~----------------------------------------------------- 384 (595)
T TIGR01393 373 VYLTNGE---------------VIEVD----------------------------------------------------- 384 (595)
T ss_pred EEecCCc---------------EEEEE-----------------------------------------------------
Confidence 9986421 01110
Q ss_pred eEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCcceeEEEEeeeeecccccccCCCChHHHHHHHHHHHHHhcCCcc
Q 003378 638 MVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRL 717 (824)
Q Consensus 638 ~~~~~~~g~~~~~~~~~~i~~Gf~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~a~~~a~~~L 717 (824)
| | .|+|+.++ -|.|
T Consensus 385 ---~--------------------------p-~~~p~~~~------------------------------------~~~l 398 (595)
T TIGR01393 385 ---N--------------------------P-SDLPDPGK------------------------------------IEHV 398 (595)
T ss_pred ---C--------------------------c-ccCCCccc------------------------------------ccce
Confidence 0 1 25554431 1567
Q ss_pred ccc-----------cccchheccccccceeeeeeccCCCCceEEEEEechhhh-cCchHHHhhhCCCceEeEeEecceee
Q 003378 718 LEP-----------ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVES-FGFSSTLRAATSGQAFPQCVFDHWDM 785 (824)
Q Consensus 718 lEP-----------~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~~ 785 (824)
||| |+|+||+++++|||++++++..++ ++..|+|.+|++|+ ++|.++|||+|+|.|+|.++|+||++
T Consensus 399 lEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~~-~~~~i~~~~Plae~~~~~~~~Lks~T~G~gs~~~~~~~Y~~ 477 (595)
T TIGR01393 399 EEPYVKATIITPTEYLGPIMTLCQEKRGVQTNMEYLDP-NRVELIYEMPLAEIVYDFFDKLKSISRGYASFDYELIGYRP 477 (595)
T ss_pred eCCeEEEEEEccHHHHHHHHHHHHHcCCEEeCcEEcCC-CeEEEEEEeccchhhhchhHHhhhhcCCEEEEEEEECCccc
Confidence 888 999999999999999999997543 37899999999997 99999999999999999999999997
Q ss_pred ---------cCCCCCCC----------chHHHHHHHHHH
Q 003378 786 ---------MSSDPLEP----------GSQASQLVLDIR 805 (824)
Q Consensus 786 ---------v~~~~~~~----------~~~a~~~i~~~r 805 (824)
+.++|.|. .+.+++++++.+
T Consensus 478 ~~~~~~~~~~n~~~~d~l~~~~~~~~~~~~~~~~~~~l~ 516 (595)
T TIGR01393 478 SDLVKLDILINGEPVDALSFIVHRDKAYSRGREICEKLK 516 (595)
T ss_pred cceEEEEEEECCcccceeEEeeeHHHHHHHHHHHHHHHH
Confidence 45566552 345677776643
No 20
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=7.5e-65 Score=582.09 Aligned_cols=436 Identities=23% Similarity=0.289 Sum_probs=344.9
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCccccc------CCceeecCChhhHhHhccceeeceEEEEEeechhhhh
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV------AGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALK 79 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~------~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~ 79 (824)
.+..+|+| +||+|||||||+++|++.+|.+.... .|...++|+.+.|++||+|+.++..++.|+
T Consensus 8 ~~~Rni~I---iGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~------- 77 (526)
T PRK00741 8 AKRRTFAI---ISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYR------- 77 (526)
T ss_pred hcCCEEEE---ECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEEC-------
Confidence 34579999 99999999999999999999886620 122346899999999999999999999996
Q ss_pred ccccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcc
Q 003378 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLEL 159 (824)
Q Consensus 80 ~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~ 159 (824)
++++|+||||||.||..++.++++.+|+||+|||+++|+..+|+.+|+++...++|+++|+||||+.
T Consensus 78 ---------~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~---- 144 (526)
T PRK00741 78 ---------DCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRD---- 144 (526)
T ss_pred ---------CEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCccc----
Confidence 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcC
Q 003378 160 QVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGE 239 (824)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~ 239 (824)
++++.++.+.+++.+. . .+...++|++.+...-++ +|+.....+.|..
T Consensus 145 ~a~~~~~l~~i~~~l~-------~-----------~~~p~~~Pig~~~~f~Gv--------------vdl~~~~~~~~~~ 192 (526)
T PRK00741 145 GREPLELLDEIEEVLG-------I-----------ACAPITWPIGMGKRFKGV--------------YDLYNDEVELYQP 192 (526)
T ss_pred ccCHHHHHHHHHHHhC-------C-----------CCeeEEeccccCCceeEE--------------EEeecceeeeccc
Confidence 8886655554444322 0 112236777665221111 4454444444421
Q ss_pred cccCCCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHh--------HHHHHH
Q 003378 240 NFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELM--------GKALMK 311 (824)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~--------~~~l~~ 311 (824)
..+.. .++.+.+++.|+++|++||++ ..+ +++... .....+
T Consensus 193 ----~~~~~-----------------------~~~~e~~~~~dd~lle~~l~~--~~~--~~l~~~lel~~~~~~~~~~~ 241 (526)
T PRK00741 193 ----GEGHT-----------------------IQEVEIIKGLDNPELDELLGE--DLA--EQLREELELVQGASNEFDLE 241 (526)
T ss_pred ----CCCCc-----------------------ceeeeeccCCCHHHHHHHhcc--cHH--HHHHHHHHhhhhcccchhHH
Confidence 00000 022445677788899999876 322 222110 011133
Q ss_pred HHH-hhhccc----------hHHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeee---
Q 003378 312 RVM-QTWLPA----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIP--- 377 (824)
Q Consensus 312 ~i~-~~~~P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~--- 377 (824)
++. ++++|+ +++|||+|++|+|+|.++... . ....+ .+.|++|+|||+..
T Consensus 242 ~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~------~---------~~~~~-~~~~~~~~VFK~~~~m~ 305 (526)
T PRK00741 242 AFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTD------E---------REVEP-TEEKFSGFVFKIQANMD 305 (526)
T ss_pred HHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCccccc------c---------eeecC-CCCceEEEEEEEEecCC
Confidence 333 578997 799999999999999754321 0 01112 34579999999984
Q ss_pred cCCCCcceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccccccccce
Q 003378 378 ASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA 457 (824)
Q Consensus 378 ~~~~g~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~~~~~~tg 457 (824)
+++.|+ ++|+|||||+|++|+.|+ |.+++++ +|+++++.++|.++.++++|.|||||++.|++++ ++|
T Consensus 306 ~~~~gr-lafvRV~sG~l~~g~~v~----~~~~~k~-----~ri~~~~~~~g~~~~~v~~a~aGDIv~v~~l~~~--~~G 373 (526)
T PRK00741 306 PKHRDR-IAFVRVCSGKFEKGMKVR----HVRTGKD-----VRISNALTFMAQDREHVEEAYAGDIIGLHNHGTI--QIG 373 (526)
T ss_pred CCcCce-EEEEEEeccEECCCCEEE----eccCCce-----EEecceEEEecCCceECceeCCCCEEEEECCCCC--ccC
Confidence 456776 999999999999999999 4445544 8999999999999999999999999999999987 889
Q ss_pred -eeecCCCCCccccccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCceEEEec-CCCcEEEEecchHHHHHHHH
Q 003378 458 -TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLK 535 (824)
Q Consensus 458 -Tl~~~~~~~~~~~~~~~~~~~Pv~~~aVep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~il~g~GElHLei~~~ 535 (824)
|||+.+ +..+++++++ +|+++++|+|+++.|.+||.+||++|++||| +++..+ +|||++|+|||||||||+++
T Consensus 374 DTL~~~~---~~~~~~i~~~-~P~~~~~v~p~~~~d~~kl~~aL~~L~eED~-l~~~~~~~t~e~il~g~G~lhleV~~~ 448 (526)
T PRK00741 374 DTFTQGE---KLKFTGIPNF-APELFRRVRLKNPLKQKQLQKGLVQLSEEGA-VQVFRPLDNNDLILGAVGQLQFEVVAH 448 (526)
T ss_pred CCccCCC---ccccCCCCCC-CccEEEEEEECCchhHHHHHHHHHHHhhcCC-eEEEECCCCCCEEEEEEeHHHHHHHHH
Confidence 998744 4567888887 9999999999999999999999999999995 999987 89999999999999999999
Q ss_pred HHHhhccCCeEEEEeCCeEeEEecccc
Q 003378 536 DLQDDFMGGAEIIKSDPVVSFRETVLE 562 (824)
Q Consensus 536 rL~~~~~~~v~v~~s~p~V~yrETi~~ 562 (824)
||+++| |+++.+++|+|++-.-|..
T Consensus 449 RL~~ey--~v~v~~~~~~v~~~rw~~~ 473 (526)
T PRK00741 449 RLKNEY--NVEAIYEPVGVATARWVEC 473 (526)
T ss_pred HHHHHh--CCEEEEecCCccEEEEEeC
Confidence 999999 9999999999998877653
No 21
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-64 Score=535.63 Aligned_cols=463 Identities=23% Similarity=0.416 Sum_probs=389.4
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
.|||| ++|+|||||||+++||.++|.......-.-|+||+...|+||||||-+....+.|+
T Consensus 6 RNIAI---IAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~---------------- 66 (603)
T COG1217 6 RNIAI---IAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYN---------------- 66 (603)
T ss_pred ceeEE---EEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecC----------------
Confidence 58999 99999999999999999999887632222479999999999999999999999997
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCHHHHHH
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 168 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~ 168 (824)
+++||++|||||.||-+|+++.+...|+++|+|||.+|..+||+.+++.|.+.++++|+||||+||+ ++.|+++..
T Consensus 67 ~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp----~Arp~~Vvd 142 (603)
T COG1217 67 GTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRP----DARPDEVVD 142 (603)
T ss_pred CeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCC----CCCHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 999999888
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcccCCCCCc
Q 003378 169 TFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRK 248 (824)
Q Consensus 169 ~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~~~~~~~ 248 (824)
+.-+++-++.+--.+ . .-++.++|+..||+..- +..
T Consensus 143 ~vfDLf~~L~A~deQ--------L-----dFPivYAS~~~G~a~~~-----------------------------~~~-- 178 (603)
T COG1217 143 EVFDLFVELGATDEQ--------L-----DFPIVYASARNGTASLD-----------------------------PED-- 178 (603)
T ss_pred HHHHHHHHhCCChhh--------C-----CCcEEEeeccCceeccC-----------------------------ccc--
Confidence 877777665543322 1 11689999999985410 000
Q ss_pred eeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhhhccchHHHHHHH
Q 003378 249 WTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEMM 328 (824)
Q Consensus 249 ~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~i 328 (824)
.+ .. .++|+++|
T Consensus 179 --------------------------------~~------------~~------------------------m~pLfe~I 190 (603)
T COG1217 179 --------------------------------EA------------DD------------------------MAPLFETI 190 (603)
T ss_pred --------------------------------cc------------cc------------------------hhHHHHHH
Confidence 00 00 16899999
Q ss_pred HhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEEcCCCC
Q 003378 329 IFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNY 408 (824)
Q Consensus 329 ~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~~~~~ 408 (824)
+++.|+|. .++++||.++|+-+-.+++.|+ ++++||++|++|+|+.|.++...
T Consensus 191 ~~hvp~P~-------------------------~~~d~PlQ~qvt~Ldyn~y~Gr-IgigRi~~G~vk~~q~V~~i~~~- 243 (603)
T COG1217 191 LDHVPAPK-------------------------GDLDEPLQMQVTQLDYNSYVGR-IGIGRIFRGTVKPNQQVALIKSD- 243 (603)
T ss_pred HHhCCCCC-------------------------CCCCCCeEEEEEeeccccccce-eEEEEEecCcccCCCeEEEEcCC-
Confidence 99999993 2578999999999999999998 99999999999999999987532
Q ss_pred CCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCCCccccccccccCCceEEEEEEe
Q 003378 409 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQC 487 (824)
Q Consensus 409 ~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~aVep 487 (824)
+.. ...||++++-+.|-++.++++|.||||+||+|+++. ..| |+|+..+ +.+++.+... +|.+++.+..
T Consensus 244 --g~~---~~gri~kllgf~GL~R~ei~eA~AGDIVaiaG~~~~--~igdTi~d~~~--~~aLp~l~iD-ePTlsMtf~v 313 (603)
T COG1217 244 --GTT---ENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDI--NIGDTICDPDN--PEALPALSVD-EPTLSMTFSV 313 (603)
T ss_pred --CcE---EeeEEEeeeeccceeeeecccccccCEEEEcCcccc--cccccccCCCC--ccCCCCcccC-CCceEEEEEe
Confidence 222 237999999999999999999999999999999997 567 9999988 6677777766 8888887754
Q ss_pred CC---------CCCHhHHHHHHHHHHhcCCceEEEec-CCCcEEEEecchHHHHHHHHHHHhhccCCeEEEEeCCeEeEE
Q 003378 488 KV---------ASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFR 557 (824)
Q Consensus 488 ~~---------~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~il~g~GElHLei~~~rL~~~~~~~v~v~~s~p~V~yr 557 (824)
.+ .-...++.+.|.+-.+.+-+|+|+.. +-..+.++|.|||||-|+++.+|++ |.|+.+|.|+|.||
T Consensus 314 N~SPfAG~EGk~vTSR~i~dRL~~El~~NValrVe~t~~pd~f~VsGRGELhLsILiE~MRRE---GfEl~VsrP~Vi~k 390 (603)
T COG1217 314 NDSPFAGKEGKFVTSRQIRDRLNKELETNVALRVEETESPDAFEVSGRGELHLSILIENMRRE---GFELQVSRPEVIIK 390 (603)
T ss_pred cCCCCCCcCCceeeHHHHHHHHHHHhhhceeEEEeecCCCCeEEEeccceeehHHHHHHhhhc---ceEEEecCceEEEE
Confidence 32 23457899999999999999999875 5688999999999999999999997 99999999999999
Q ss_pred ecccccccceeeeecCCCeeEEEEEEeeCchhhhhhhcCCcCCCCCChhhHHHhhhhhcCCchhccCeEEEeccCCCCCc
Q 003378 558 ETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPN 637 (824)
Q Consensus 558 ETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gp~~~g~n 637 (824)
| |.+.. +||.+.
T Consensus 391 e-idG~~------------------~EP~E~------------------------------------------------- 402 (603)
T COG1217 391 E-IDGVK------------------CEPFEE------------------------------------------------- 402 (603)
T ss_pred e-cCCcC------------------cCccee-------------------------------------------------
Confidence 9 54321 222210
Q ss_pred eEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCcceeEEEEeeeeecccccccCCCChHHHHHHHHHHHHHhcCCcc
Q 003378 638 MVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRL 717 (824)
Q Consensus 638 ~~~~~~~g~~~~~~~~~~i~~Gf~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~a~~~a~~~L 717 (824)
+.+.+.+
T Consensus 403 ---------------------------------------v~iDv~e---------------------------------- 409 (603)
T COG1217 403 ---------------------------------------VTIDVPE---------------------------------- 409 (603)
T ss_pred ---------------------------------------EEecCch----------------------------------
Confidence 1110000
Q ss_pred ccccccchheccccccceeeeeeccCCCCceEEEEEechhhhcCchHHHhhhCCCceEeEeEecceeecCCCC
Q 003378 718 LEPALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDP 790 (824)
Q Consensus 718 lEP~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~ 790 (824)
-+.|.|+..|..|+|+..+|.+.+ .++.++...+|.+-++||.+++-++|+|.|.+...|+||+++.++.
T Consensus 410 --e~~G~Vie~lg~RKgem~~M~~~g-~G~~Rlef~iPaRGLIGfrteFlt~TrG~Gi~n~~F~~Y~p~~g~i 479 (603)
T COG1217 410 --EHQGAVIEKLGERKGEMKDMAPDG-KGRVRLEFVIPARGLIGFRTEFLTMTRGTGIMNHSFDHYRPVKGEI 479 (603)
T ss_pred --hhhhHHHHHHhhhhHhHhhcccCC-CCeEEEEEEccCcceeccchheeeccccceeeeecccccccccccc
Confidence 066788899999999999998864 4799999999999999999999999999999999999999999864
No 22
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=8.2e-63 Score=565.40 Aligned_cols=430 Identities=20% Similarity=0.272 Sum_probs=328.1
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCccccc----CC--ceeecCChhhHhHhccceeeceEEEEEeechhhhh
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV----AG--DVRMTDTRQDEAERGITIKSTGISLYYEMTDAALK 79 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~----~g--~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~ 79 (824)
.+..+|+| +||+|||||||+++|++.+|.+.... .| ..+++|+.+.|++||+|+.++...+.|.
T Consensus 9 ~~~Rniai---iGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~------- 78 (527)
T TIGR00503 9 DKRRTFAI---ISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYR------- 78 (527)
T ss_pred ccCCEEEE---EcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeC-------
Confidence 45679999 99999999999999999999886520 11 1368999999999999999999999986
Q ss_pred ccccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcc
Q 003378 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLEL 159 (824)
Q Consensus 80 ~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~ 159 (824)
++.+||||||||.||..++.++++.+|+||+|||+..|+..+|+.+|+.+...++|+++|+||||+.
T Consensus 79 ---------~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~---- 145 (527)
T TIGR00503 79 ---------DCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRD---- 145 (527)
T ss_pred ---------CeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc----
Confidence 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcC--CChHHHHHHhh
Q 003378 160 QVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFG--VDESKMMERLW 237 (824)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~--id~~~l~~~l~ 237 (824)
+++++++.+.+++.+.. .+...++|++.+. .|. +|+.....++|
T Consensus 146 ~~~~~~ll~~i~~~l~~------------------~~~~~~~PIg~~~----------------~f~gv~d~l~~~~~~y 191 (527)
T TIGR00503 146 IRDPLELLDEVENELKI------------------NCAPITWPIGCGK----------------LFKGVYHLLKDETYLY 191 (527)
T ss_pred CCCHHHHHHHHHHHhCC------------------CCccEEEEecCCC----------------ceeEEEEcccCcceec
Confidence 88876666555543321 1112256665441 111 33333333433
Q ss_pred cCcccCCCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHH------HHhcCCCCCHHHHHHhHHHHHH
Q 003378 238 GENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPM------LQKLGVTMKSEEKELMGKALMK 311 (824)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~------l~~~~~~l~~~el~~~~~~l~~ 311 (824)
.+ ..++....... ..+... .+.+.++. .+.++++ +++.+.+++. +
T Consensus 192 ~~----~~~~~~~~~~~-~~~~~~-----------~~~e~~~~--~~~~~~~~~~le~~~~~~~~~~~-----------~ 242 (527)
T TIGR00503 192 QS----GTGGTIQAVRQ-VKGLNN-----------PALDSAVG--SDLAQQLRDELELVEGASNEFDL-----------A 242 (527)
T ss_pred Cc----cCCCceeEeeh-hccCCC-----------hhhhhhhh--HHHHHHHHHHHHHHhhhccccCH-----------H
Confidence 21 01111111100 000000 00111111 1122222 2221222221 1
Q ss_pred HHH-hhhccc----------hHHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeee--c
Q 003378 312 RVM-QTWLPA----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIP--A 378 (824)
Q Consensus 312 ~i~-~~~~P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~--~ 378 (824)
++. ++++|+ ++.|||++++|+|+|.++.... ....+ .++|++|+|||+.. +
T Consensus 243 ~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~~---------------~~~~~-~~~~~~~~VFK~~~~md 306 (527)
T TIGR00503 243 AFHGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSDT---------------RTVEP-TEEKFSGFVFKIQANMD 306 (527)
T ss_pred HHhcCCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCCc---------------eecCC-CCCCeeEEEEEEEeccC
Confidence 222 578887 8999999999999997543110 01122 45789999999998 6
Q ss_pred -CCCCcceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccccccccce
Q 003378 379 -SDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA 457 (824)
Q Consensus 379 -~~~g~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~~~~~~tg 457 (824)
++.|+ ++|+|||||+|++|++|+ |.+++++ +|+++++.++|++++++++|.|||||++.|++.+ ++|
T Consensus 307 p~~~gr-iaf~RV~sG~l~~g~~v~----~~~~~k~-----~ri~~~~~~~g~~~~~v~~a~aGDI~~~~~~~~~--~~G 374 (527)
T TIGR00503 307 PKHRDR-VAFMRVVSGKYEKGMKLK----HVRTGKD-----VVISDALTFMAGDREHVEEAYAGDIIGLHNHGTI--QIG 374 (527)
T ss_pred cccCce-EEEEEEeeeEEcCCCEEE----ecCCCCc-----EEecchhhhhcCCceEcceeCCCCEEEEECCCCc--ccC
Confidence 46787 999999999999999999 4445544 8999999999999999999999999999999987 889
Q ss_pred -eeecCCCCCccccccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCceEEEec-CCCcEEEEecchHHHHHHHH
Q 003378 458 -TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLK 535 (824)
Q Consensus 458 -Tl~~~~~~~~~~~~~~~~~~~Pv~~~aVep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~il~g~GElHLei~~~ 535 (824)
|||+ .. ...+++++++ .|+++++|+|+++.|++||.+||++|++||| +++..+ +|+|++|+|||||||||+++
T Consensus 375 Dtl~~-~~--~~~~~~i~~~-~P~~~~~v~~~~~~d~~kl~~aL~~L~eED~-l~v~~~~~t~e~il~g~GelhleV~~~ 449 (527)
T TIGR00503 375 DTFTQ-GE--KIKFTGIPNF-APELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPLDNNDLIVGAVGVLQFDVVVY 449 (527)
T ss_pred CEecC-CC--ceeecCCCCC-CcceEEEEEECChhhHHHHHHHHHHHHhhCC-eEEEEcCCCCCEEEEEEeHHHHHHHHH
Confidence 9988 33 5667788876 9999999999999999999999999999998 999987 89999999999999999999
Q ss_pred HHHhhccCCeEEEEeCCeEeE
Q 003378 536 DLQDDFMGGAEIIKSDPVVSF 556 (824)
Q Consensus 536 rL~~~~~~~v~v~~s~p~V~y 556 (824)
||+++| ||++.+++|+|+.
T Consensus 450 RL~~ey--~v~v~~~~~~v~~ 468 (527)
T TIGR00503 450 RLKEEY--NVEARYEPVNVAT 468 (527)
T ss_pred HHHHHh--CCeEEEeCCCceE
Confidence 999999 9999999999884
No 23
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5e-62 Score=525.95 Aligned_cols=469 Identities=27% Similarity=0.363 Sum_probs=378.1
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
++-.|++| ++|+|||||||+++||..+|.++.. .+..+++|+.+-||||||||++.+.++.|.
T Consensus 58 ~~iRNfsI---IAHVDHGKSTLaDrLLe~tg~i~~~-~~q~q~LDkl~vERERGITIkaQtasify~------------- 120 (650)
T KOG0462|consen 58 ENIRNFSI---IAHVDHGKSTLADRLLELTGTIDNN-IGQEQVLDKLQVERERGITIKAQTASIFYK------------- 120 (650)
T ss_pred hhccceEE---EEEecCCcchHHHHHHHHhCCCCCC-CchhhhhhhhhhhhhcCcEEEeeeeEEEEE-------------
Confidence 45578999 9999999999999999999988774 556789999999999999999999999997
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCHHH
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 165 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~ 165 (824)
+++.|.+|+||||||+||..|+.+++..||||||||||.+|+++||...+..|.+.++.+|.|+||+|++ .+++++
T Consensus 121 ~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp----~adpe~ 196 (650)
T KOG0462|consen 121 DGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLP----SADPER 196 (650)
T ss_pred cCCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCC----CCCHHH
Confidence 3567999999999999999999999999999999999999999999999999999999999999999999 999998
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcccCCC
Q 003378 166 AYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 245 (824)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~~~~ 245 (824)
+..++.+.++. .|. .+.+.|+..||+
T Consensus 197 V~~q~~~lF~~------------------~~~--~~i~vSAK~G~~---------------------------------- 222 (650)
T KOG0462|consen 197 VENQLFELFDI------------------PPA--EVIYVSAKTGLN---------------------------------- 222 (650)
T ss_pred HHHHHHHHhcC------------------Ccc--ceEEEEeccCcc----------------------------------
Confidence 87776665542 111 456666655441
Q ss_pred CCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhhhccchHHHH
Q 003378 246 TRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALL 325 (824)
Q Consensus 246 ~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LL 325 (824)
+..+|
T Consensus 223 ---------------------------------------------------------------------------v~~lL 227 (650)
T KOG0462|consen 223 ---------------------------------------------------------------------------VEELL 227 (650)
T ss_pred ---------------------------------------------------------------------------HHHHH
Confidence 13578
Q ss_pred HHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEEcC
Q 003378 326 EMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMG 405 (824)
Q Consensus 326 d~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~~ 405 (824)
++|++.+|.|. ...++||.+++|..+.|.+.|. ++++||..|.+++||.|..+.
T Consensus 228 ~AII~rVPpP~-------------------------~~~d~plr~Lifds~yD~y~G~-I~~vrv~~G~vrkGdkV~~~~ 281 (650)
T KOG0462|consen 228 EAIIRRVPPPK-------------------------GIRDAPLRMLIFDSEYDEYRGV-IALVRVVDGVVRKGDKVQSAA 281 (650)
T ss_pred HHHHhhCCCCC-------------------------CCCCcchHHHhhhhhhhhhcce-EEEEEEeeeeeecCCEEEEee
Confidence 89999999993 2357899999999999999997 999999999999999998642
Q ss_pred CCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEec-cccccccce-eeecCCC-CCccccccccccCCceEE
Q 003378 406 PNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVG-LDQYITKNA-TLTNEKE-VDAHPIRAMKFSVSPVVR 482 (824)
Q Consensus 406 ~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~g-l~~~~~~tg-Tl~~~~~-~~~~~~~~~~~~~~Pv~~ 482 (824)
++++ .+.+.-.++....-...++....+|+|++..+ +++. ..| |+++... +....++.... +.|+++
T Consensus 282 ----t~~~---yev~~vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea--~IGdTi~~~~~~~~v~tl~~~~~-~~pMvF 351 (650)
T KOG0462|consen 282 ----TGKS---YEVKVVGVMRPEMTPVVELDAGQVGYIICNMRNVKEA--QIGDTIAHKSVTKAVETLPGFEP-TKPMVF 351 (650)
T ss_pred ----cCcc---eEeEEeEEeccCceeeeeecccccceeEecccccccc--cccceeeecccCcccCcCCCCCC-CcceEE
Confidence 2322 34566667766666667777788888888777 8777 678 9988653 11234445443 499999
Q ss_pred EEEEeCCCCCHhHHHHHHHHHHhcCCceEEEecCCC---c-EEEEecchHHHHHHHHHHHhhccCCeEEEEeCCeEeEEe
Q 003378 483 VAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESG---E-HIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRE 558 (824)
Q Consensus 483 ~aVep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etg---e-~il~g~GElHLei~~~rL~~~~~~~v~v~~s~p~V~yrE 558 (824)
+...|.+..|...|.+++.+|+.+|+++.+..+.++ + +.+++.|.|||+|.++||+++| |.++.+++|.|+||=
T Consensus 352 vg~fP~dgsd~~~l~~a~erL~lnd~sv~v~~~~s~aLg~gwr~gflG~LHm~Vf~erle~Ey--g~elivt~PtV~Yr~ 429 (650)
T KOG0462|consen 352 VGLFPLDGSDYETLRDAIERLVLNDESVTVIKESSGALGQGWRLGFLGLLHMEVFIERLEREY--GAELIVTPPTVPYRV 429 (650)
T ss_pred eccccCccchhhhHHHHHHHHhcccccceeeecCCcccccceEeeccceeeHHHHHHHHHHhc--CceeeecCCcceEEE
Confidence 999999999999999999999999999999886444 3 7999999999999999999999 999999999999995
Q ss_pred cccccccceeeeecCCCeeEEEEEEeeCchhhhhhhcCCcCCCCCChhhHHHhhhhhcCCchhccCeEEEeccCCCCCce
Q 003378 559 TVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNM 638 (824)
Q Consensus 559 Ti~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gp~~~g~n~ 638 (824)
-.....+. .+ . . |+.
T Consensus 430 ~~~~~~~~---------------~i-----------~----------------------------------n-----p~~ 444 (650)
T KOG0462|consen 430 VYSNGDEI---------------LI-----------S----------------------------------N-----PAL 444 (650)
T ss_pred EecCCcee---------------ee-----------c----------------------------------C-----hhh
Confidence 43322100 00 0 0 111
Q ss_pred EEecccCccchHHHHHHHHHHHHHHHHcCCccCCCcceeEEEEeeeeecccccccCCCChHHHHHHHHHHHHHhcCCccc
Q 003378 639 VVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLL 718 (824)
Q Consensus 639 ~~~~~~g~~~~~~~~~~i~~Gf~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~a~~~a~~~Ll 718 (824)
|-|.. =++. .-||+..+.+.
T Consensus 445 fp~~~------------~v~~----------~lEP~v~~tii-------------------------------------- 464 (650)
T KOG0462|consen 445 FPDPS------------DVKE----------FLEPYVEATII-------------------------------------- 464 (650)
T ss_pred CCCcc------------cchh----------hcCceEEEEEE--------------------------------------
Confidence 11100 0000 02333222221
Q ss_pred cc--cccchheccccccceeeeeeccCCCCceEEEEEechhhhcC-chHHHhhhCCCceEeEeEecceeecCCCC
Q 003378 719 EP--ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFG-FSSTLRAATSGQAFPQCVFDHWDMMSSDP 790 (824)
Q Consensus 719 EP--~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~~g-y~~~Lrs~T~G~~~~~~~f~~y~~v~~~~ 790 (824)
-| |+|.|+..++.|||+..++...++ +...++-++|++|+.| |...|.|.|+|.|+|..+|++|+ ++|.
T Consensus 465 ~P~Ey~G~Vi~Lc~~rRgeq~dm~~i~~-nr~~lky~lPl~elv~df~~~lks~tsGyAs~dye~~gY~--~sdL 536 (650)
T KOG0462|consen 465 TPDEYVGAVIELCSERRGEQKDMTYIDG-NRVMLKYQLPLRELVGDFFDRLKSLTSGYASFDYEDAGYQ--ASDL 536 (650)
T ss_pred CcHHHHHHHHHHHHHhhhheecceeccC-CeEEEEEecChHHHHHHHHHHHhccccceeEEeecccccc--cccc
Confidence 13 999999999999999999998876 4888999999999998 99999999999999999999999 4543
No 24
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=8e-57 Score=477.97 Aligned_cols=467 Identities=26% Similarity=0.385 Sum_probs=371.5
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+-.|++| ++|+|||||||+++|+..+|.++.+... ..++|+++-||||||||++..+.+.|.. .
T Consensus 7 ~~IRNFsI---IAHIDHGKSTLaDRlle~t~~~~~Rem~-~Q~LDsMdiERERGITIKaq~v~l~Yk~-----------~ 71 (603)
T COG0481 7 KNIRNFSI---IAHIDHGKSTLADRLLELTGGLSEREMR-AQVLDSMDIERERGITIKAQAVRLNYKA-----------K 71 (603)
T ss_pred hhccceEE---EEEecCCcchHHHHHHHHhcCcChHHHH-HHhhhhhhhHhhcCceEEeeEEEEEEEe-----------C
Confidence 34468999 9999999999999999999988875332 5699999999999999999999999974 3
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCHHH
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 165 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~ 165 (824)
+++.|.+||||||||+||..|+.+++..|.||+|||||+.|+++||..-..+|...++-+|-|+||+|++ .++|+.
T Consensus 72 ~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP----~Adper 147 (603)
T COG0481 72 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLP----AADPER 147 (603)
T ss_pred CCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCC----CCCHHH
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcccCCC
Q 003378 166 AYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 245 (824)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~~~~ 245 (824)
+.+++++++.- ++. ..+..|+..
T Consensus 148 vk~eIe~~iGi------------------d~~--dav~~SAKt------------------------------------- 170 (603)
T COG0481 148 VKQEIEDIIGI------------------DAS--DAVLVSAKT------------------------------------- 170 (603)
T ss_pred HHHHHHHHhCC------------------Ccc--hheeEeccc-------------------------------------
Confidence 88777765540 000 111222210
Q ss_pred CCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhhhccchHHHH
Q 003378 246 TRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALL 325 (824)
Q Consensus 246 ~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LL 325 (824)
++|+ ..+|
T Consensus 171 ----------------------------------------------G~gI--------------------------~~iL 178 (603)
T COG0481 171 ----------------------------------------------GIGI--------------------------EDVL 178 (603)
T ss_pred ----------------------------------------------CCCH--------------------------HHHH
Confidence 0122 5689
Q ss_pred HHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEEcC
Q 003378 326 EMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMG 405 (824)
Q Consensus 326 d~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~~ 405 (824)
++|++.+|+|. .++++|+-|++|.-+.|++.|- ++++||+.|++++||+|.+++
T Consensus 179 e~Iv~~iP~P~-------------------------g~~~~pLkALifDS~yD~Y~GV-v~~vRi~dG~ik~gdki~~m~ 232 (603)
T COG0481 179 EAIVEKIPPPK-------------------------GDPDAPLKALIFDSWYDNYLGV-VVLVRIFDGTLKKGDKIRMMS 232 (603)
T ss_pred HHHHhhCCCCC-------------------------CCCCCcceEEEEeccccccceE-EEEEEEeeceecCCCEEEEEe
Confidence 99999999992 3678999999999999999997 999999999999999999864
Q ss_pred CCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEe-ccccc-cccce-eeecCCCCCccccccccccCCceEE
Q 003378 406 PNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-GLDQY-ITKNA-TLTNEKEVDAHPIRAMKFSVSPVVR 482 (824)
Q Consensus 406 ~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~-gl~~~-~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~ 482 (824)
++++ ..|.++.++.- ...+.+++.||+++-+. |+++. -++.| |+++..+....++++.+.. .|+++
T Consensus 233 ----tg~~-----y~V~evGvftP-~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~~p~~e~LpGfk~~-~P~Vf 301 (603)
T COG0481 233 ----TGKE-----YEVDEVGIFTP-KMVKVDELKAGEVGYIIAGIKDVRDARVGDTITLASNPATEPLPGFKEV-KPMVF 301 (603)
T ss_pred ----cCCE-----EEEEEEeeccC-CccccccccCCceeEEEEeeeecccCcccceEeccCCCccccCCCCCcC-CceEE
Confidence 3433 67788877765 67889999999997653 44432 11556 7774443225567777764 99999
Q ss_pred EEEEeCCCCCHhHHHHHHHHHHhcCCceEEEecCC---C-cEEEEecchHHHHHHHHHHHhhccCCeEEEEeCCeEeEEe
Q 003378 483 VAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEES---G-EHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRE 558 (824)
Q Consensus 483 ~aVep~~~~d~~kL~~aL~~L~~eDPsl~v~~~et---g-e~il~g~GElHLei~~~rL~~~~~~~v~v~~s~p~V~yrE 558 (824)
+.+.|.+..|.+.|.+||.+|.-.|.+|.++.+.+ | -+-+...|-|||||+.+||+++| ++++....|.|.|+=
T Consensus 302 ~GlyPid~~dye~LrdAleKL~LNDasl~~E~EtS~ALGfGfRcGFLGlLHmeiiqERLeREf--~ldlI~TaPsV~Y~v 379 (603)
T COG0481 302 AGLYPVDSDDYEDLRDALEKLQLNDASLTYEPETSQALGFGFRCGFLGLLHMEIIQERLEREF--DLDLITTAPSVVYKV 379 (603)
T ss_pred EeecccChhHHHHHHHHHHhcccccceeeeccccchhccCceeehhhhHHHHHHHHHHHHHhh--CcceEecCCceEEEE
Confidence 99999999999999999999999999999976532 2 36788899999999999999999 999999999999996
Q ss_pred cccccccceeeeecCCCeeEEEEEEeeCchhhhhhhcCCcCCCCCChhhHHHhhhhhcCCchhccCeEEEeccCCCCCce
Q 003378 559 TVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNM 638 (824)
Q Consensus 559 Ti~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gp~~~g~n~ 638 (824)
..+...+.. ..|+. . -|+. +.
T Consensus 380 ~~~~g~~~~----i~NPs---------------------~-------------------------------~P~~---~~ 400 (603)
T COG0481 380 ELTDGEEIE----VDNPS---------------------D-------------------------------LPDP---NK 400 (603)
T ss_pred EEcCCcEEE----ecChH---------------------h-------------------------------CCCh---hh
Confidence 654321100 00000 0 0100 00
Q ss_pred EEecccCccchHHHHHHHHHHHHHHHHcCCccCCCcceeEEEEeeeeecccccccCCCChHHHHHHHHHHHHHhcCCccc
Q 003378 639 VVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLL 718 (824)
Q Consensus 639 ~~~~~~g~~~~~~~~~~i~~Gf~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~a~~~a~~~Ll 718 (824)
|. -..||...+. ++
T Consensus 401 -----------------I~-----------~i~EP~v~~~--------------------------------------ii 414 (603)
T COG0481 401 -----------------IE-----------EIEEPYVKAT--------------------------------------II 414 (603)
T ss_pred -----------------hh-----------eeeCceeEEE--------------------------------------Ee
Confidence 00 0123332211 23
Q ss_pred cc--cccchheccccccceeeeeeccCCCCceEEEEEechhhhc-CchHHHhhhCCCceEeEeEecceee
Q 003378 719 EP--ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESF-GFSSTLRAATSGQAFPQCVFDHWDM 785 (824)
Q Consensus 719 EP--~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~~-gy~~~Lrs~T~G~~~~~~~f~~y~~ 785 (824)
-| |+|.||...+++||...+++..+. ....+.-.+|++|.. +|.+.|.|.|+|.|+|..+|.+|++
T Consensus 415 ~P~eylG~vm~Lcq~kRG~~~~m~yl~~-~rv~l~Y~lPl~Eiv~DFfDkLKS~skGYAS~DYe~~~y~~ 483 (603)
T COG0481 415 TPQEYLGNVMELCQEKRGIQIDMEYLDQ-NRVMLTYELPLAEIVFDFFDKLKSISKGYASFDYEFIGYRE 483 (603)
T ss_pred CcHHHHHHHHHHHHHhcCceecceEecC-ceEEEEEecchHHHHHHHhHhhhccccceeeeccccccccc
Confidence 35 999999999999999999988753 588999999999975 9999999999999999999999986
No 25
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-51 Score=435.05 Aligned_cols=432 Identities=24% Similarity=0.334 Sum_probs=313.7
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCc--------eeecCChhhHhHhccceeeceEEEEEeechhhh
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGD--------VRMTDTRQDEAERGITIKSTGISLYYEMTDAAL 78 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~--------~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~ 78 (824)
+..+.|| |.|+|+|||||++.||...|.|.. +|. ...+|++.-|++|||+|.+++..|.|.
T Consensus 11 rRRTFAI---ISHPDAGKTTlTEkLLlfGgaIq~--AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~------ 79 (528)
T COG4108 11 RRRTFAI---ISHPDAGKTTLTEKLLLFGGAIQE--AGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYA------ 79 (528)
T ss_pred hhcceeE---EecCCCCcccHHHHHHHhcchhhh--cceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccC------
Confidence 4467888 999999999999999998887765 443 358999999999999999999999986
Q ss_pred hccccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhc
Q 003378 79 KSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLE 158 (824)
Q Consensus 79 ~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~ 158 (824)
++.+||+|||||.||+..+.+.|..+|.||+||||..|+.+||..+++-|+.+++|++=|||||||.
T Consensus 80 ----------~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~--- 146 (528)
T COG4108 80 ----------DCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDRE--- 146 (528)
T ss_pred ----------CeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccc---
Confidence 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhc
Q 003378 159 LQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWG 238 (824)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~ 238 (824)
+-+|-++.+.+++.+. +.. .|. +.|+|.|.. |...|.-.-+ . -.+
T Consensus 147 -~rdP~ELLdEiE~~L~-i~~---------------~Pi--tWPIG~gk~--------F~Gvy~l~~~--~----v~~-- 191 (528)
T COG4108 147 -GRDPLELLDEIEEELG-IQC---------------API--TWPIGMGKD--------FKGVYHLYND--E----VEL-- 191 (528)
T ss_pred -cCChHHHHHHHHHHhC-cce---------------ecc--cccccCCcc--------cceeeeeccC--E----EEE--
Confidence 9998887776666544 111 222 567777632 2222210000 0 001
Q ss_pred CcccCCCCC--ceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhh
Q 003378 239 ENFFDPATR--KWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQT 316 (824)
Q Consensus 239 ~~~~~~~~~--~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~ 316 (824)
|.++.. ........+- ..+...+..-+..| +.+.+ +-+++... +-+.+.+ +.+. ..
T Consensus 192 ---y~~~~~~~~~~~~~~~~~-~~p~~~~~l~~~~~---~~~~e-e~EL~~~a----~~~Fd~~-------~fl~---G~ 249 (528)
T COG4108 192 ---YESGHTDQERRADIVKGL-DNPELDALLGEDLA---EQLRE-ELELVQGA----GNEFDLE-------AFLA---GE 249 (528)
T ss_pred ---eccCCCccccccccccCC-CChhHHhhhchHHH---HHHHH-HHHHHHhh----ccccCHH-------HHhc---CC
Confidence 111110 0000000000 00011111111110 10000 01111111 1111111 1111 34
Q ss_pred hccc----------hHHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCC-CCCeEEEEEEeeecCCCCc--
Q 003378 317 WLPA----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDP-EGPLMLYVSKMIPASDKGR-- 383 (824)
Q Consensus 317 ~~P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~p~va~VfK~~~~~~~g~-- 383 (824)
..|+ ++.+|++++++.|+|..++... +...| +..|.++|||+....+..+
T Consensus 250 ~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~-----------------~~v~p~e~kfsGFVFKIQANMDp~HRD 312 (528)
T COG4108 250 LTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADT-----------------REVEPTEDKFSGFVFKIQANMDPKHRD 312 (528)
T ss_pred ccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCc-----------------CcccCCCCccceEEEEEEcCCCccccc
Confidence 5554 8999999999999997554210 01222 3459999999998655443
Q ss_pred ceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccccccccce-eeecC
Q 003378 384 FFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNE 462 (824)
Q Consensus 384 ~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~ 462 (824)
+++|.||.||.+.+|+.+. +.++|++ .+++.-..+++++++.+++|+||||++|..-... +.| |++..
T Consensus 313 RIAFmRv~SGkferGMkv~----h~rtGK~-----~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG~~--~IGDT~t~G 381 (528)
T COG4108 313 RIAFMRVCSGKFERGMKVT----HVRTGKD-----VKLSDALTFMAQDRETVEEAYAGDIIGLHNHGTI--QIGDTFTEG 381 (528)
T ss_pred ceeEEEeccccccCCceee----eeecCCc-----eEecchHhhhhhhhhhhhhccCCCeEeccCCCce--eecceeecC
Confidence 3999999999999999998 5667765 8999999999999999999999999999765555 677 88765
Q ss_pred CCCCccccccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCceEEEecCCCcEEEEecchHHHHHHHHHHHhhcc
Q 003378 463 KEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFM 542 (824)
Q Consensus 463 ~~~~~~~~~~~~~~~~Pv~~~aVep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g~GElHLei~~~rL~~~~~ 542 (824)
. ...|.+++.. .|-+...|..+++....+|.+||++|++|-..--++...+.++||...|.||+||+.+||+++|
T Consensus 382 -e--~l~f~giP~F-aPE~frrvr~kd~~K~Kql~Kgl~QL~eEGavQ~f~p~~~~d~IlGAVG~LQFeV~~~RL~~EY- 456 (528)
T COG4108 382 -E--KLKFTGIPNF-APELFRRVRLKDPLKQKQLKKGLEQLAEEGAVQVFKPLDGNDLILGAVGQLQFEVVQARLKNEY- 456 (528)
T ss_pred -c--eeeecCCCCC-CHHHHHHHhcCChHHHHHHHHHHHHHhhcCeeEEEecCCCCCceEEeeeeeehHHHHHHHHhhh-
Confidence 3 5678888877 8999999999999999999999999999985544444488999999999999999999999999
Q ss_pred CCeEEEEeCCe
Q 003378 543 GGAEIIKSDPV 553 (824)
Q Consensus 543 ~~v~v~~s~p~ 553 (824)
++++.+.+..
T Consensus 457 -~ve~~~e~~~ 466 (528)
T COG4108 457 -NVEAVFEPVN 466 (528)
T ss_pred -CCeEEEeecc
Confidence 9999886543
No 26
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=100.00 E-value=2.4e-39 Score=332.94 Aligned_cols=204 Identities=59% Similarity=0.958 Sum_probs=182.4
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
.+||+ +||+|||||||+++|++.+|.+.+...|..+++|++++|++||+|++++.+++.|..... ...+++
T Consensus 1 RNvai---iGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~------~~~~~~ 71 (222)
T cd01885 1 RNICI---IAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEE------DKADGN 71 (222)
T ss_pred CeEEE---ECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcc------cccCCC
Confidence 37899 999999999999999999998887667778999999999999999999999998863110 012345
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCHHHHHH
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 168 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~ 168 (824)
++.++|||||||.+|..++..+++.+|+|++|||+.+|+..||+.+|+++...++|+|+|+||||+.+.+++.+++++|.
T Consensus 72 ~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~~e~~~~~~~~~~ 151 (222)
T cd01885 72 EYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLILELKLSPEEAYQ 151 (222)
T ss_pred ceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhhcCCHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhccCCC-----CCCceeecccceeecccCccceeeehhhHHHHh
Q 003378 169 TFQKVIENANVIMATYEDPL-----LGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMY 221 (824)
Q Consensus 169 ~~~~~~~~~~~~l~~~~~~~-----~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~ 221 (824)
+++++++++|.++..+..+. ...+.|+|.+|||.|+|+.+||+|++++||++|
T Consensus 152 ~~~~ii~~~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f~~~~f~~~~ 209 (222)
T cd01885 152 RLARIIEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFTIIKFARIY 209 (222)
T ss_pred HHHHHHHHHhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEeccccccchH
Confidence 99999999999998774331 134678999999999999999999998887777
No 27
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=100.00 E-value=8.1e-37 Score=324.08 Aligned_cols=255 Identities=29% Similarity=0.410 Sum_probs=204.4
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccc--cCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~--~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
||++ +||+|||||||+++|++.+|.+.+. ....++++|+.++|++||+|++++..++.|.
T Consensus 1 nv~i---vGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--------------- 62 (270)
T cd01886 1 NIGI---IAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK--------------- 62 (270)
T ss_pred CEEE---EcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC---------------
Confidence 5888 9999999999999999999987662 1112578999999999999999999999997
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCHHHHH
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAY 167 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~ 167 (824)
+++++|||||||.+|..++.++++.+|++|+|||+.+|++.+|+.+|+.+...++|+++|+||||+. +++++++.
T Consensus 63 -~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~----~a~~~~~~ 137 (270)
T cd01886 63 -DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRT----GADFFRVV 137 (270)
T ss_pred -CEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCC----CCCHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 88865554
Q ss_pred HHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcC--CChHHHHHHhhcCcccCCC
Q 003378 168 QTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFG--VDESKMMERLWGENFFDPA 245 (824)
Q Consensus 168 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~--id~~~l~~~l~~~~~~~~~ 245 (824)
+.+++.+.. .+....+|++.. ..|. +|+..++.|.|.+. .
T Consensus 138 ~~l~~~l~~------------------~~~~~~~Pisa~----------------~~f~g~vd~~~~~a~~~~~~----~ 179 (270)
T cd01886 138 EQIREKLGA------------------NPVPLQLPIGEE----------------DDFRGVVDLIEMKALYWDGE----L 179 (270)
T ss_pred HHHHHHhCC------------------CceEEEeccccC----------------CCceEEEEccccEEEecccC----C
Confidence 444443321 122225566443 2222 67777777766321 1
Q ss_pred CCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-hhhccc----
Q 003378 246 TRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA---- 320 (824)
Q Consensus 246 ~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~---- 320 (824)
++++...+ .+..+.+.+.+.+.+|+|++++.|+++|++||++ .+++.+|+. ++|.+++. ++++|+
T Consensus 180 ~~~~~~~~-----ip~~~~~~~~~~r~~l~e~vae~dd~L~e~yl~~--~~~~~~el~---~~l~~~~~~~~~~PV~~gS 249 (270)
T cd01886 180 GEKIEETE-----IPEDLLEEAEEAREELIETLAEFDDELMEKYLEG--EEITEEEIK---AAIRKGTIANKIVPVLCGS 249 (270)
T ss_pred CceeEEec-----CCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhCC--CCCCHHHHH---HHHHHHHHcCcEEEEEeCc
Confidence 22232222 2345666677778899999999999999999998 789999997 46666665 689997
Q ss_pred ------hHHHHHHHHhcCCCc
Q 003378 321 ------SSALLEMMIFHLPSP 335 (824)
Q Consensus 321 ------~~~LLd~i~~~lPsP 335 (824)
++.|||++++|+|+|
T Consensus 250 a~~~~Gi~~lld~i~~~~p~p 270 (270)
T cd01886 250 AFKNKGVQPLLDAVVDYLPSP 270 (270)
T ss_pred CCCCcCHHHHHHHHHHhcCCC
Confidence 799999999999998
No 28
>cd01683 EF2_IV_snRNP EF-2_domain IV_snRNP domain is a part of 116kD U5-specific protein of the U5 small nucleoprotein (snRNP) particle, essential component of the spliceosome. The protein is structurally closely related to the eukaryotic translational elongation factor EF2. This domain has been also identified in 114kD U5-specific protein of Saccharomyces cerevisiae and may play an important role either in splicing process itself or the recycling of spliceosomal snRNP.
Probab=100.00 E-value=9.9e-37 Score=301.25 Aligned_cols=170 Identities=46% Similarity=0.846 Sum_probs=162.8
Q ss_pred CCeEeEEecccccccceeeeecCCCeeEEEEEEeeCchhhhhhhcCCcCCCCCChhhHHHhhhhhcCCchhccCeEEEec
Q 003378 551 DPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFG 630 (824)
Q Consensus 551 ~p~V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g 630 (824)
+|.|+|||||.+.+...+..+++|+|++++++++||++++.+.|+.|.+...++.+.+.+.|...||||.+++++||+||
T Consensus 1 ~P~V~f~ETv~~~s~~~~~~ks~nk~n~i~~~aepL~~~l~~~i~~g~~~~~~~~~~~~~~l~~~~~wd~~~~~~iw~fg 80 (178)
T cd01683 1 DPVVTFCETVVETSSAKCFAETPNKKNKITMIAEPLDKGLAEDIENGQLKLSWNRKKLGKFLRTKYGWDALAARSIWAFG 80 (178)
T ss_pred CCcceEEeeccccCCCceeeECCCcccEEEEEEEeCCHHHHHHHHcCCCCcCcCHHHHHHHHHHHhCCCHHHhcCeEEEc
Confidence 69999999999998888889999999999999999999999999999998888999999999999999999999999999
Q ss_pred cCCCCCceEEeccc----CccchHHHHHHHHHHHHHHHHcCCccCCCcceeEEEEeeeeecccccccCCCChHHHHHHHH
Q 003378 631 PETIGPNMVVDMCK----GVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVI 706 (824)
Q Consensus 631 p~~~g~n~~~~~~~----g~~~~~~~~~~i~~Gf~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~ 706 (824)
|++.|+|+|+|.+. +.+|+++++++|++||++|+++||||||||+||+|+|.|+.+|.|+.+++.+|+++|+|+||
T Consensus 81 P~~~g~Nilvd~t~~~~~~~~~~~~~~~sI~~Gf~~a~~~GPL~gepv~gv~v~l~d~~~~~d~~~~~~~qi~~aar~a~ 160 (178)
T cd01683 81 PDTKGPNVLIDDTLPEEVDKNLLNSVKESIVQGFQWAVREGPLCEEPIRNVKFKLLDADIASEPIDRGGGQIIPTARRAC 160 (178)
T ss_pred CCCCCCeEEEecCcCcccchhhHHHHHHHHHHHHHHHHHcCCcCCCeeecEEEEEEEeeeccccCCCchHHHHHHHHHHH
Confidence 99999999999987 55688999999999999999999999999999999999999998888888999999999999
Q ss_pred HHHHHhcCCccccc
Q 003378 707 YASQLTAKPRLLEP 720 (824)
Q Consensus 707 ~~a~~~a~~~LlEP 720 (824)
++|+++|+|+||||
T Consensus 161 ~~a~l~a~prLLEP 174 (178)
T cd01683 161 YSAFLLATPRLMEP 174 (178)
T ss_pred HHHHHHCCCEEEcc
Confidence 99999999999999
No 29
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=5.3e-33 Score=313.10 Aligned_cols=293 Identities=21% Similarity=0.333 Sum_probs=218.4
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
..+++|++ +||+|||||||+++|++..|.++.........+|+.++|++||+|++++...+.++
T Consensus 10 ~~~~~i~i---~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~------------- 73 (409)
T CHL00071 10 KPHVNIGT---IGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETE------------- 73 (409)
T ss_pred CCeEEEEE---ECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccC-------------
Confidence 66799999 99999999999999999988775432223457999999999999999988776654
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCc-eEEEEeCCCcchhcccCCHH
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQVDGE 164 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p-~ilviNKiD~~~~~~~~~~~ 164 (824)
+..++|+|||||.+|..++.++++.+|+|++|||+.+|+..||++++.++...++| +|+|+||||+. . .+
T Consensus 74 ---~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~----~--~~ 144 (409)
T CHL00071 74 ---NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQV----D--DE 144 (409)
T ss_pred ---CeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCC----C--HH
Confidence 77899999999999999999999999999999999999999999999999999999 56899999997 3 23
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcccCC
Q 003378 165 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 244 (824)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~~~ 244 (824)
+.++. +.++++..+..+. +.+...++.++|++.||+.....
T Consensus 145 ~~~~~---~~~~l~~~l~~~~--------~~~~~~~ii~~Sa~~g~n~~~~~---------------------------- 185 (409)
T CHL00071 145 ELLEL---VELEVRELLSKYD--------FPGDDIPIVSGSALLALEALTEN---------------------------- 185 (409)
T ss_pred HHHHH---HHHHHHHHHHHhC--------CCCCcceEEEcchhhcccccccC----------------------------
Confidence 33333 3334555554322 11112256677888777431100
Q ss_pred CCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhhhccchHHH
Q 003378 245 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSAL 324 (824)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~L 324 (824)
. .+. .. . ..|......|
T Consensus 186 -~-~~~-----------------------------~~-------------~-------------------~~w~~~~~~l 202 (409)
T CHL00071 186 -P-KIK-----------------------------RG-------------E-------------------NKWVDKIYNL 202 (409)
T ss_pred -c-ccc-----------------------------cc-------------C-------------------CchhhhHHHH
Confidence 0 000 00 0 0122223578
Q ss_pred HHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEEc
Q 003378 325 LEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIM 404 (824)
Q Consensus 325 Ld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~ 404 (824)
|+++.+++|+|.. +.+.||.++|++++..++.|. ++++||+||+++.||.|.++
T Consensus 203 l~~l~~~~~~p~~-------------------------~~~~p~r~~I~~v~~~~g~G~-Vv~G~V~sG~l~~Gd~v~i~ 256 (409)
T CHL00071 203 MDAVDSYIPTPER-------------------------DTDKPFLMAIEDVFSITGRGT-VATGRIERGTVKVGDTVEIV 256 (409)
T ss_pred HHHHHhhCCCCCC-------------------------CCCCCEEEEEEEEEEeCCCeE-EEEEEEecCEEeeCCEEEEe
Confidence 8899888888721 245799999999999888887 89999999999999999876
Q ss_pred CCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEe--ccccccccce-eeecC
Q 003378 405 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TLTNE 462 (824)
Q Consensus 405 ~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~--gl~~~~~~tg-Tl~~~ 462 (824)
++. .+. ..+|++|... .+++++|.|||+|++. |++...++.| +|++.
T Consensus 257 p~~--~~~-----~~~VksI~~~----~~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~~ 306 (409)
T CHL00071 257 GLR--ETK-----TTTVTGLEMF----QKTLDEGLAGDNVGILLRGIQKEDIERGMVLAKP 306 (409)
T ss_pred eCC--CCc-----EEEEEEEEEc----CcCCCEECCCceeEEEEcCCCHHHcCCeEEEecC
Confidence 532 111 2688888764 2478999999999664 6654444678 77764
No 30
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=100.00 E-value=4.3e-33 Score=290.68 Aligned_cols=222 Identities=30% Similarity=0.411 Sum_probs=181.6
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCc----eeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGD----VRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~----~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
||++ +||+|+|||||+++|++.+|.+.+ .|+ ++++|+.++|++||+|+..+...+.|.
T Consensus 1 ni~i---~G~~~~GKTtL~~~ll~~~g~i~~--~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~------------- 62 (237)
T cd04168 1 NIGI---LAHVDAGKTTLTESLLYTSGAIRK--LGSVDKGTTRTDTMELERQRGITIFSAVASFQWE------------- 62 (237)
T ss_pred CEEE---EcCCCCCHHHHHHHHHHHcCCccc--cccccCCcccCCCchhHhhCCCceeeeeEEEEEC-------------
Confidence 5788 999999999999999999998876 332 568999999999999999999999996
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCHHH
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 165 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~ 165 (824)
+++++|||||||.+|..++..+++.+|++++|+|+.+|++.+++.+|+++.+.++|+++|+||+|+. ++++++
T Consensus 63 ---~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~----~a~~~~ 135 (237)
T cd04168 63 ---DTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRA----GADLEK 135 (237)
T ss_pred ---CEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccc----CCCHHH
Confidence 8899999999999999999999999999999999999999999999999999999999999999999 888666
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcccCCC
Q 003378 166 AYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 245 (824)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~~~~ 245 (824)
+++.+++.+.. . +...++| +|.+. ++
T Consensus 136 ~~~~i~~~~~~---~---------------~~~~~~p------~~~~~---------------------------~~--- 161 (237)
T cd04168 136 VYQEIKEKLSS---D---------------IVPMQKV------GLAPN---------------------------IC--- 161 (237)
T ss_pred HHHHHHHHHCC---C---------------eEEEECC------cEeee---------------------------ee---
Confidence 55554443321 1 1111222 11110 00
Q ss_pred CCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-hhhccc----
Q 003378 246 TRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA---- 320 (824)
Q Consensus 246 ~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~---- 320 (824)
...+ ...+|+|++++.|+++||+||++ .+++.+|+. ++|.+++. ++++|+
T Consensus 162 ----~~~~----------------~~~~l~e~vae~dd~l~e~yl~~--~~~~~~el~---~~l~~~~~~~~~~Pv~~gs 216 (237)
T cd04168 162 ----ETNE----------------IDDEFWETLAEGDDELLEKYLEG--GPIEELELD---NELSARIAKRKVFPVYHGS 216 (237)
T ss_pred ----eeee----------------ccHHHHHHHhcCCHHHHHHHhCC--CCCCHHHHH---HHHHHHHHhCCeEEEEEcc
Confidence 0000 01478999999999999999997 889999997 46666665 689997
Q ss_pred ------hHHHHHHHHhcCCCc
Q 003378 321 ------SSALLEMMIFHLPSP 335 (824)
Q Consensus 321 ------~~~LLd~i~~~lPsP 335 (824)
++.|||++++|+|||
T Consensus 217 a~~~~Gv~~ll~~~~~~~p~~ 237 (237)
T cd04168 217 ALKGIGIEELLEGITKLFPTS 237 (237)
T ss_pred ccCCcCHHHHHHHHHHhcCCC
Confidence 899999999999998
No 31
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-32 Score=292.43 Aligned_cols=287 Identities=26% Similarity=0.359 Sum_probs=212.3
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccc----------cCCc-----eeecCChhhHhHhccceeeceEEEE
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRQDEAERGITIKSTGISLY 70 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~----------~~g~-----~~~~D~~~~E~~rgiTi~~~~~~~~ 70 (824)
...+++++ +||+|||||||+.+|||..|.++.+ ..|+ .++||+.++||+||+||+.+..+|+
T Consensus 5 Kph~nl~~---iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fe 81 (428)
T COG5256 5 KPHLNLVF---IGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFE 81 (428)
T ss_pred CCceEEEE---EcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEee
Confidence 45689999 9999999999999999999999774 2343 5799999999999999999999988
Q ss_pred EeechhhhhccccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCC-------cchhHHHHHHHHHhCCC
Q 003378 71 YEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQALGERI 143 (824)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~g-------v~~~t~~~l~~~~~~~~ 143 (824)
.. .+.++|+|||||.||..+++.++..||.|||||||..| +..||++++-.+...++
T Consensus 82 t~----------------k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi 145 (428)
T COG5256 82 TD----------------KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGI 145 (428)
T ss_pred cC----------------CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCC
Confidence 75 78899999999999999999999999999999999998 99999999999999999
Q ss_pred c-eEEEEeCCCcchhcccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhh
Q 003378 144 R-PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYA 222 (824)
Q Consensus 144 p-~ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~ 222 (824)
. .|+++||||.+ .+| .++++++.++++.++..++..+. ++.|.| .||+.|.+.+-.
T Consensus 146 ~~lIVavNKMD~v----~wd----e~rf~ei~~~v~~l~k~~G~~~~-~v~FIP-------iSg~~G~Nl~~~------- 202 (428)
T COG5256 146 KQLIVAVNKMDLV----SWD----EERFEEIVSEVSKLLKMVGYNPK-DVPFIP-------ISGFKGDNLTKK------- 202 (428)
T ss_pred ceEEEEEEccccc----ccC----HHHHHHHHHHHHHHHHHcCCCcc-CCeEEe-------cccccCCccccc-------
Confidence 7 55789999999 777 34577777777776554332211 223333 455544322110
Q ss_pred hhcCCChHHHHHHhhcCcccCCCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHH
Q 003378 223 SKFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEK 302 (824)
Q Consensus 223 ~~~~id~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el 302 (824)
.+. .- | |. +
T Consensus 203 -------s~~--~p-----------------------------------W--Y~---------------G---------- 211 (428)
T COG5256 203 -------SEN--MP-----------------------------------W--YK---------------G---------- 211 (428)
T ss_pred -------CcC--Cc-----------------------------------C--cc---------------C----------
Confidence 000 00 1 10 0
Q ss_pred HHhHHHHHHHHHhhhccchHHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCC
Q 003378 303 ELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKG 382 (824)
Q Consensus 303 ~~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g 382 (824)
..||+++. .+..|.. .-+.||...|-.++.....|
T Consensus 212 -------------------pTLleaLd-~~~~p~~-------------------------~~d~Plr~pI~~v~~i~~~g 246 (428)
T COG5256 212 -------------------PTLLEALD-QLEPPER-------------------------PLDKPLRLPIQDVYSISGIG 246 (428)
T ss_pred -------------------ChHHHHHh-ccCCCCC-------------------------CCCCCeEeEeeeEEEecCCc
Confidence 12344443 3444410 13589999999998867778
Q ss_pred cceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEE--eccccccccce-ee
Q 003378 383 RFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TL 459 (824)
Q Consensus 383 ~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai--~gl~~~~~~tg-Tl 459 (824)
. +..+||.||.|++||.|++.+.. .. -.|+.+.. +.++++.+.+||.+.+ +|++...++.| .+
T Consensus 247 t-v~vGrVEsG~i~~g~~v~~~p~~----~~-----~evksie~----~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~ 312 (428)
T COG5256 247 T-VPVGRVESGVIKPGQKVTFMPAG----VV-----GEVKSIEM----HHEEISQAEPGDNVGFNVRGVEKNDIRRGDVI 312 (428)
T ss_pred e-EEEEEEeeeeeccCCEEEEecCc----ce-----EEEeeeee----cccccccCCCCCeEEEEecCCchhccCCccEe
Confidence 7 89999999999999999986532 11 46666664 2788999999999875 57665445778 44
Q ss_pred ecCCC
Q 003378 460 TNEKE 464 (824)
Q Consensus 460 ~~~~~ 464 (824)
++..+
T Consensus 313 ~~~~n 317 (428)
T COG5256 313 GHSDN 317 (428)
T ss_pred ccCCC
Confidence 44433
No 32
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=3.8e-32 Score=304.67 Aligned_cols=284 Identities=23% Similarity=0.338 Sum_probs=206.8
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +||+|||||||+++|+...+...+......+.+|..++|++||+|++++...+.+.
T Consensus 10 k~~~ni~i---~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~------------- 73 (394)
T PRK12736 10 KPHVNIGT---IGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETE------------- 73 (394)
T ss_pred CCeeEEEE---EccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCC-------------
Confidence 56789999 99999999999999986543211100001236899999999999999877665543
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCce-EEEEeCCCcchhcccCCHH
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRCFLELQVDGE 164 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~-ilviNKiD~~~~~~~~~~~ 164 (824)
++.++|||||||.+|..++.++++.+|++++|||+.+|+..||+++|.++...++|. |+|+||||+. . .+
T Consensus 74 ---~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~----~--~~ 144 (394)
T PRK12736 74 ---KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLV----D--DE 144 (394)
T ss_pred ---CcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCc----c--hH
Confidence 678999999999999999999999999999999999999999999999999999994 6889999987 3 22
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcccCC
Q 003378 165 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 244 (824)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~~~ 244 (824)
+.++. +.++++..+..+. +.+...++.+.|++.|+. +
T Consensus 145 ~~~~~---i~~~i~~~l~~~~--------~~~~~~~ii~vSa~~g~~--------------------------~------ 181 (394)
T PRK12736 145 ELLEL---VEMEVRELLSEYD--------FPGDDIPVIRGSALKALE--------------------------G------ 181 (394)
T ss_pred HHHHH---HHHHHHHHHHHhC--------CCcCCccEEEeecccccc--------------------------C------
Confidence 33322 2234444444321 111111344455533210 0
Q ss_pred CCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhhhccchHHH
Q 003378 245 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSAL 324 (824)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~L 324 (824)
. ..|.+.+..|
T Consensus 182 --------------------------------------------------~-------------------~~~~~~i~~L 192 (394)
T PRK12736 182 --------------------------------------------------D-------------------PKWEDAIMEL 192 (394)
T ss_pred --------------------------------------------------C-------------------CcchhhHHHH
Confidence 0 0122223678
Q ss_pred HHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEEc
Q 003378 325 LEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIM 404 (824)
Q Consensus 325 Ld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~ 404 (824)
++++.+++|.|. .+.++||.++|++++..++.|. ++++||++|+|+.||.|+++
T Consensus 193 l~~l~~~lp~~~-------------------------~~~~~p~r~~I~~~~~~~g~G~-Vv~G~v~~G~l~~gd~v~i~ 246 (394)
T PRK12736 193 MDAVDEYIPTPE-------------------------RDTDKPFLMPVEDVFTITGRGT-VVTGRVERGTVKVGDEVEIV 246 (394)
T ss_pred HHHHHHhCCCCC-------------------------CCCCCCeEEEEEEEEecCCcEE-EEEEEEeecEEecCCEEEEe
Confidence 888888999772 1245799999999999888887 99999999999999999987
Q ss_pred CCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEE--eccccccccce-eeecCC
Q 003378 405 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNEK 463 (824)
Q Consensus 405 ~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai--~gl~~~~~~tg-Tl~~~~ 463 (824)
+.+. +. ..+|++|... ..++++|.|||++++ .|++...++.| +||+.+
T Consensus 247 p~~~--~~-----~~~V~sI~~~----~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~~~~ 297 (394)
T PRK12736 247 GIKE--TQ-----KTVVTGVEMF----RKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAKPG 297 (394)
T ss_pred cCCC--Ce-----EEEEEEEEEC----CEEccEECCCCEEEEEECCCcHHhCCcceEEecCC
Confidence 5321 11 2688888763 467999999999966 67764434678 787643
No 33
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=100.00 E-value=1.7e-32 Score=290.75 Aligned_cols=249 Identities=22% Similarity=0.243 Sum_probs=188.0
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCccccc--C----CceeecCChhhHhHhccceeeceEEEEEeechhhhhcc
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV--A----GDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSY 81 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~--~----g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~ 81 (824)
..+|++ +||+|+|||||+++|++.+|.+++.. . ...+++|+.++|++||+|+..+..++.|.
T Consensus 2 ~Rni~i---vGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~--------- 69 (267)
T cd04169 2 RRTFAI---ISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYR--------- 69 (267)
T ss_pred ccEEEE---EcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeC---------
Confidence 368999 99999999999999999999887631 0 12357999999999999999999999996
Q ss_pred ccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccC
Q 003378 82 RGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQV 161 (824)
Q Consensus 82 ~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~ 161 (824)
+++++|||||||.+|..++..+++.+|++|+|+|++.|+..+++.+|+++...++|+++|+||||+. ++
T Consensus 70 -------~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~----~a 138 (267)
T cd04169 70 -------DCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDRE----GR 138 (267)
T ss_pred -------CEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccC----CC
Confidence 8999999999999999999999999999999999999999999999999998999999999999999 88
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcc
Q 003378 162 DGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENF 241 (824)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~ 241 (824)
+..++++.+++.+. . .+...++|++.+...-++ +|+..++.|.|.+.
T Consensus 139 ~~~~~~~~l~~~l~-------~-----------~~~~~~~Pi~~~~~~~g~--------------vd~~~~~a~~~~~~- 185 (267)
T cd04169 139 DPLELLDEIEEELG-------I-----------DCTPLTWPIGMGKDFKGV--------------YDRRTGEVELYDRG- 185 (267)
T ss_pred CHHHHHHHHHHHHC-------C-----------CceeEEecccCCCceEEE--------------EEhhhCEEEEecCC-
Confidence 75554444433221 1 111235677655221111 67776666655210
Q ss_pred cCCCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-hhhccc
Q 003378 242 FDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA 320 (824)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~ 320 (824)
.+++.....+. +. .+.|.+++.|+++||+|+++ .+++.+++. ..+.+++. ++++|+
T Consensus 186 --~~~~~~~~~~~-----p~-----------~~~e~~~e~~~~l~e~~~e~--~~~~~~~~~---~~~~~~~~~~~~~Pv 242 (267)
T cd04169 186 --AGGATIAPEET-----KG-----------LDDPKLDELGGDLAEQLREE--LELLEGAGP---EFDQEAFLAGELTPV 242 (267)
T ss_pred --CCCccceeccC-----Cc-----------ccHHHHHhcCHHHHHHHhCC--CccchhhhH---HHhHHHHHcCCEEEE
Confidence 01101111110 11 12377888999999999997 677777764 34444544 689997
Q ss_pred ----------hHHHHHHHHhcCCCc
Q 003378 321 ----------SSALLEMMIFHLPSP 335 (824)
Q Consensus 321 ----------~~~LLd~i~~~lPsP 335 (824)
++.|||+|++|+|+|
T Consensus 243 ~~gsa~~~~Gv~~Lld~i~~~~P~p 267 (267)
T cd04169 243 FFGSALNNFGVQELLDALVDLAPAP 267 (267)
T ss_pred EecccccCcCHHHHHHHHHHHCCCC
Confidence 899999999999998
No 34
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=6e-32 Score=305.84 Aligned_cols=288 Identities=22% Similarity=0.281 Sum_probs=209.7
Q ss_pred CceeeEEEeecCccCCCCCHHHHHHHHHHHcCCccccc----------CCc-----eeecCChhhHhHhccceeeceEEE
Q 003378 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRQDEAERGITIKSTGISL 69 (824)
Q Consensus 5 ~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~----------~g~-----~~~~D~~~~E~~rgiTi~~~~~~~ 69 (824)
+..+++|++ +||+|||||||+++||+.+|.+++.. .|+ .+++|..++|++||+|++.+...+
T Consensus 4 ~k~~~ni~i---~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~ 80 (447)
T PLN00043 4 EKVHINIVV---IGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKF 80 (447)
T ss_pred CCceEEEEE---EecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEe
Confidence 456799999 99999999999999999999876531 111 357999999999999999998888
Q ss_pred EEeechhhhhccccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCc-------chhHHHHHHHHHhCC
Q 003378 70 YYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-------CVQTETVLRQALGER 142 (824)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv-------~~~t~~~l~~~~~~~ 142 (824)
.|. ++.++|||||||.||..++..+++.+|+||+|||+.+|. ..||+++|.++...+
T Consensus 81 ~~~----------------~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~g 144 (447)
T PLN00043 81 ETT----------------KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLG 144 (447)
T ss_pred cCC----------------CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcC
Confidence 775 889999999999999999999999999999999999983 379999999999999
Q ss_pred Cce-EEEEeCCCcchhcccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHh
Q 003378 143 IRP-VLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMY 221 (824)
Q Consensus 143 ~p~-ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~ 221 (824)
+|. |+|+||||+. ..+ ...+++.+++++++..+..++ +.+....+...|++.|++..-.
T Consensus 145 i~~iIV~vNKmD~~----~~~--~~~~~~~~i~~ei~~~l~~~g--------~~~~~~~~ipiSa~~G~ni~~~------ 204 (447)
T PLN00043 145 VKQMICCCNKMDAT----TPK--YSKARYDEIVKEVSSYLKKVG--------YNPDKIPFVPISGFEGDNMIER------ 204 (447)
T ss_pred CCcEEEEEEcccCC----chh--hhHHHHHHHHHHHHHHHHHcC--------CCcccceEEEEecccccccccc------
Confidence 975 6789999986 322 223457777777777776432 1222223444566555432000
Q ss_pred hhhcCCChHHHHHHhhcCcccCCCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHH
Q 003378 222 ASKFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEE 301 (824)
Q Consensus 222 ~~~~~id~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~e 301 (824)
.. ..- | | ++
T Consensus 205 --------~~--~~~-----------------------------------W--y---------------~g--------- 213 (447)
T PLN00043 205 --------ST--NLD-----------------------------------W--Y---------------KG--------- 213 (447)
T ss_pred --------cc--CCc-----------------------------------c--c---------------ch---------
Confidence 00 000 1 0 00
Q ss_pred HHHhHHHHHHHHHhhhccchHHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCC
Q 003378 302 KELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDK 381 (824)
Q Consensus 302 l~~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~ 381 (824)
..||+++.+ +|.|. .+.+.||.+.|..++..++.
T Consensus 214 --------------------~tLl~~l~~-i~~p~-------------------------~~~~~plr~~I~~v~~~~g~ 247 (447)
T PLN00043 214 --------------------PTLLEALDQ-INEPK-------------------------RPSDKPLRLPLQDVYKIGGI 247 (447)
T ss_pred --------------------HHHHHHHhh-cCCCc-------------------------cccCCCcEEEEEEEEEeCCc
Confidence 234555533 34441 12357899999999887777
Q ss_pred CcceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEe--ccccccccce-e
Q 003378 382 GRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-T 458 (824)
Q Consensus 382 g~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~--gl~~~~~~tg-T 458 (824)
|. +..+||.+|+|+.||.|.+.+. +. ..+|+.|.. ...++++|.|||.+++. +++...++.| .
T Consensus 248 G~-vv~G~V~~G~l~~Gd~v~~~P~----~~-----~~~VksI~~----~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~v 313 (447)
T PLN00043 248 GT-VPVGRVETGVIKPGMVVTFGPT----GL-----TTEVKSVEM----HHESLQEALPGDNVGFNVKNVAVKDLKRGYV 313 (447)
T ss_pred EE-EEEEEEECCEEeeCCEEEEcCC----CC-----EEEEEEEEE----CCeEeCEecCCCeEEEEECCCCHhhCCCccE
Confidence 76 8999999999999999997532 22 268888875 35789999999998874 5543334667 6
Q ss_pred eecC
Q 003378 459 LTNE 462 (824)
Q Consensus 459 l~~~ 462 (824)
||+.
T Consensus 314 l~~~ 317 (447)
T PLN00043 314 ASNS 317 (447)
T ss_pred EccC
Confidence 6664
No 35
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=1.5e-31 Score=302.86 Aligned_cols=288 Identities=23% Similarity=0.293 Sum_probs=208.3
Q ss_pred CceeeEEEeecCccCCCCCHHHHHHHHHHHcCCccccc----------CC--ce---eecCChhhHhHhccceeeceEEE
Q 003378 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV----------AG--DV---RMTDTRQDEAERGITIKSTGISL 69 (824)
Q Consensus 5 ~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~----------~g--~~---~~~D~~~~E~~rgiTi~~~~~~~ 69 (824)
+..+++|++ +||+|||||||+++|++..|.++... .| .. +.+|+.++|++||+|++.+...+
T Consensus 4 ~k~~~nv~i---~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~ 80 (446)
T PTZ00141 4 EKTHINLVV---IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF 80 (446)
T ss_pred CCceEEEEE---EecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEE
Confidence 456799999 99999999999999999999887531 12 22 46999999999999999998888
Q ss_pred EEeechhhhhccccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCc-------chhHHHHHHHHHhCC
Q 003378 70 YYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-------CVQTETVLRQALGER 142 (824)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv-------~~~t~~~l~~~~~~~ 142 (824)
.|+ ++.++|||||||.+|..++..++..+|+||+|||+.+|+ ..||+++|.++...+
T Consensus 81 ~~~----------------~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~g 144 (446)
T PTZ00141 81 ETP----------------KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLG 144 (446)
T ss_pred ccC----------------CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcC
Confidence 775 889999999999999999999999999999999999998 589999999999999
Q ss_pred Cce-EEEEeCCCcchhcccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHh
Q 003378 143 IRP-VLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMY 221 (824)
Q Consensus 143 ~p~-ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~ 221 (824)
+|. |+|+||||+. ..++++ +++.++.+++...+.... +.+...++...|++.|.+..-.
T Consensus 145 i~~iiv~vNKmD~~----~~~~~~--~~~~~i~~~i~~~l~~~g--------~~~~~~~~ipiSa~~g~ni~~~------ 204 (446)
T PTZ00141 145 VKQMIVCINKMDDK----TVNYSQ--ERYDEIKKEVSAYLKKVG--------YNPEKVPFIPISGWQGDNMIEK------ 204 (446)
T ss_pred CCeEEEEEEccccc----cchhhH--HHHHHHHHHHHHHHHhcC--------CCcccceEEEeecccCCCcccC------
Confidence 996 5899999965 333222 346666666666665321 1122223444566544322000
Q ss_pred hhhcCCChHHHHHHhhcCcccCCCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHH
Q 003378 222 ASKFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEE 301 (824)
Q Consensus 222 ~~~~~id~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~e 301 (824)
.. ..- | | ++
T Consensus 205 --------~~--~~~-----------------------------------W--y---------------~G--------- 213 (446)
T PTZ00141 205 --------SD--NMP-----------------------------------W--Y---------------KG--------- 213 (446)
T ss_pred --------CC--CCc-----------------------------------c--c---------------ch---------
Confidence 00 000 1 0 00
Q ss_pred HHHhHHHHHHHHHhhhccchHHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCC
Q 003378 302 KELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDK 381 (824)
Q Consensus 302 l~~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~ 381 (824)
..|++++.++ +.|. .+.+.|+.++|..++..++.
T Consensus 214 --------------------~tL~~~l~~~-~~~~-------------------------~~~~~p~r~~I~~v~~v~g~ 247 (446)
T PTZ00141 214 --------------------PTLLEALDTL-EPPK-------------------------RPVDKPLRLPLQDVYKIGGI 247 (446)
T ss_pred --------------------HHHHHHHhCC-CCCC-------------------------cCCCCCeEEEEEEEEecCCc
Confidence 2345554333 3331 02357899999999887777
Q ss_pred CcceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEe--ccccccccce-e
Q 003378 382 GRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-T 458 (824)
Q Consensus 382 g~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~--gl~~~~~~tg-T 458 (824)
|. +..+||.+|+|+.||.|.+++. +. ..+|++|... ..++++|.|||.+++. +++...++.| .
T Consensus 248 Gt-vv~G~V~~G~l~~Gd~v~i~P~----~~-----~~~VksI~~~----~~~~~~a~aG~~v~i~L~~i~~~~v~rG~v 313 (446)
T PTZ00141 248 GT-VPVGRVETGILKPGMVVTFAPS----GV-----TTEVKSVEMH----HEQLAEAVPGDNVGFNVKNVSVKDIKRGYV 313 (446)
T ss_pred eE-EEEEEEEcceEecCCEEEEccC----Cc-----EEEEEEEEec----CcccCEECCCCEEEEEECCCCHHHcCCceE
Confidence 76 8999999999999999998642 11 2688888753 4679999999999874 4433334567 6
Q ss_pred eecC
Q 003378 459 LTNE 462 (824)
Q Consensus 459 l~~~ 462 (824)
|++.
T Consensus 314 l~~~ 317 (446)
T PTZ00141 314 ASDS 317 (446)
T ss_pred EecC
Confidence 6654
No 36
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=4.5e-31 Score=296.27 Aligned_cols=285 Identities=20% Similarity=0.294 Sum_probs=208.5
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +||+|||||||+++|++..+..........+.+|+.++|++||+|++++...+.+.
T Consensus 10 ~~~~~i~i---iGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~------------- 73 (396)
T PRK12735 10 KPHVNVGT---IGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETA------------- 73 (396)
T ss_pred CCeEEEEE---ECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCC-------------
Confidence 56789999 99999999999999987543211110111247899999999999999877666553
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceE-EEEeCCCcchhcccCCHH
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRCFLELQVDGE 164 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~i-lviNKiD~~~~~~~~~~~ 164 (824)
+..++|||||||.+|..++.+++..+|++++|||+.+|+..||++++..+...++|.+ +|+||||+. . .+
T Consensus 74 ---~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~----~--~~ 144 (396)
T PRK12735 74 ---NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMV----D--DE 144 (396)
T ss_pred ---CcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCc----c--hH
Confidence 6789999999999999999999999999999999999999999999999999999977 579999987 3 22
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcccCC
Q 003378 165 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 244 (824)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~~~ 244 (824)
+.++. +.++++..+..+.. .+...++.+.|++.||.... ..
T Consensus 145 ~~~~~---~~~ei~~~l~~~~~--------~~~~~~ii~~Sa~~g~n~~~-------------------~~--------- 185 (396)
T PRK12735 145 ELLEL---VEMEVRELLSKYDF--------PGDDTPIIRGSALKALEGDD-------------------DE--------- 185 (396)
T ss_pred HHHHH---HHHHHHHHHHHcCC--------CcCceeEEecchhccccCCC-------------------CC---------
Confidence 33332 33344555543221 11122455566665542100 00
Q ss_pred CCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhhhccchHHH
Q 003378 245 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSAL 324 (824)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~L 324 (824)
.|.+....|
T Consensus 186 -----------------------------------------------------------------------~w~~~~~~L 194 (396)
T PRK12735 186 -----------------------------------------------------------------------EWEAKILEL 194 (396)
T ss_pred -----------------------------------------------------------------------cccccHHHH
Confidence 011123568
Q ss_pred HHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEEc
Q 003378 325 LEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIM 404 (824)
Q Consensus 325 Ld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~ 404 (824)
++++.+++|.|.. +.++||.++|..++..++.|. ++.+||.+|+|+.||.|+++
T Consensus 195 l~~l~~~~~~p~~-------------------------~~~~p~r~~I~~~f~v~g~Gt-vv~G~v~~G~i~~gd~v~i~ 248 (396)
T PRK12735 195 MDAVDSYIPEPER-------------------------AIDKPFLMPIEDVFSISGRGT-VVTGRVERGIVKVGDEVEIV 248 (396)
T ss_pred HHHHHhcCCCCCc-------------------------cCCCCeEEEEEEEEecCCceE-EEEEEEEecEEeCCCEEEEe
Confidence 8888888987721 235799999999998888886 89999999999999999987
Q ss_pred CCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEE--eccccccccce-eeecC
Q 003378 405 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNE 462 (824)
Q Consensus 405 ~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai--~gl~~~~~~tg-Tl~~~ 462 (824)
+.+ .+. ..+|+.|... .+++++|.|||.+++ .|++....+.| +||+.
T Consensus 249 p~~--~~~-----~~~VksI~~~----~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~~~ 298 (396)
T PRK12735 249 GIK--ETQ-----KTTVTGVEMF----RKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKP 298 (396)
T ss_pred cCC--CCe-----EEEEEEEEEC----CeEeCEECCCCEEEEEeCCCcHHHCCcceEEEcC
Confidence 532 111 2678888752 478999999999988 57755444667 77764
No 37
>cd01681 aeEF2_snRNP_like_IV This family represents domain IV of archaeal and eukaryotic elongation factor 2 (aeEF-2) and of an evolutionarily conserved U5 snRNP-specific protein. U5 snRNP is a GTP-binding factor closely related to the ribosomal translocase EF-2. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Phe-tRNA, EF-1 (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=99.98 E-value=4.4e-32 Score=270.27 Aligned_cols=171 Identities=65% Similarity=1.081 Sum_probs=156.8
Q ss_pred CCeEeEEecccccccceeeeecCCCeeEEEEEEeeCchhhhhhhcCCcCCCCCChhhHHHhhhhhcCCchhccCeEEEec
Q 003378 551 DPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFG 630 (824)
Q Consensus 551 ~p~V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g 630 (824)
+|.|+|||||.+.+...+..+++++|++++++++|||.++.+.|++|........+.+.+.+...++|+...+++||+||
T Consensus 1 ~PiV~frETi~~~~~~~~~~~s~n~~~~i~~~a~PLp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~Iw~fG 80 (177)
T cd01681 1 DPVVSFRETVVETSSGTCLAKSPNKHNRLYMRAEPLPEELIEDIEKGKITLKDDKKKRARILLDKYGWDKLAARKIWAFG 80 (177)
T ss_pred CCCCCEeeecccCCCccEEEEcCCcceEEEEEEecCCHHHHHHHHcCCCCcchhHHHHHHHHHHHcCCCHHHhCcEEEEC
Confidence 69999999999988777788999999999999999999999999998876555555556677789999999999999999
Q ss_pred cCCCCCceEEecccCccc----hHHHHHHHHHHHHHHHHcCCccCCCcceeEEEEeeeeecccccccCCCChHHHHHHHH
Q 003378 631 PETIGPNMVVDMCKGVQY----LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVI 706 (824)
Q Consensus 631 p~~~g~n~~~~~~~g~~~----~~~~~~~i~~Gf~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~ 706 (824)
|++.|+|+|+|.+.+.++ +++++++|++||++|+++||||||||+||+|+|.++.+|.+..+...+|+++|+|+||
T Consensus 81 P~~~gpNiLi~~t~~~~~~~~~~~~~~~si~~Gf~~a~~~GpL~~ePv~gv~v~l~~~~~~~~~~~~~~~~~~~a~r~a~ 160 (177)
T cd01681 81 PDRTGPNILVDDTKGVQYDKSLLNEIKDSIVAGFQWATKEGPLCEEPMRGVKFKLEDATLHADAIHRGGGQIIPAARRAC 160 (177)
T ss_pred CCCCCceEEEeCCCCcccccccHHHHHHHHHHHHHHHHhcCCcCCCcccceEEEEEeeeecccccCCchhhHHHHHHHHH
Confidence 999999999999988777 8999999999999999999999999999999999999998767788899999999999
Q ss_pred HHHHHhcCCcccccc
Q 003378 707 YASQLTAKPRLLEPA 721 (824)
Q Consensus 707 ~~a~~~a~~~LlEP~ 721 (824)
++|+++|+|+||||.
T Consensus 161 ~~a~~~a~p~LlEPi 175 (177)
T cd01681 161 YAAFLLASPRLMEPM 175 (177)
T ss_pred HHHHhhCCCEEEccc
Confidence 999999999999993
No 38
>PLN03126 Elongation factor Tu; Provisional
Probab=99.98 E-value=8.1e-31 Score=297.57 Aligned_cols=294 Identities=22% Similarity=0.319 Sum_probs=215.0
Q ss_pred CceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccc
Q 003378 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 5 ~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (824)
+...++|++ +||+|||||||+++|++..+.+..........+|+.++|++||+|++.....+.++
T Consensus 78 ~k~~~ni~i---iGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~------------ 142 (478)
T PLN03126 78 KKPHVNIGT---IGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETE------------ 142 (478)
T ss_pred cCCeeEEEE---ECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecC------------
Confidence 456789999 99999999999999999988776543333568999999999999999988887775
Q ss_pred cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCc-eEEEEeCCCcchhcccCCH
Q 003378 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQVDG 163 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p-~ilviNKiD~~~~~~~~~~ 163 (824)
++.++|||||||.+|..++..++..+|+|++|||+.+|+..||+++|.++...++| +|+|+||||+. . .
T Consensus 143 ----~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~----~--~ 212 (478)
T PLN03126 143 ----NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV----D--D 212 (478)
T ss_pred ----CcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeccccc----C--H
Confidence 77999999999999999999999999999999999999999999999999999999 56899999987 3 3
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcccC
Q 003378 164 EEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFD 243 (824)
Q Consensus 164 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~~ 243 (824)
++.++. +.++++.++..++. .+...++.+.|++.||..... +..
T Consensus 213 ~~~~~~---i~~~i~~~l~~~g~--------~~~~~~~vp~Sa~~g~n~~~~-----------------------~~~-- 256 (478)
T PLN03126 213 EELLEL---VELEVRELLSSYEF--------PGDDIPIISGSALLALEALME-----------------------NPN-- 256 (478)
T ss_pred HHHHHH---HHHHHHHHHHhcCC--------CcCcceEEEEEcccccccccc-----------------------ccc--
Confidence 444433 33455555554221 111223455677766532100 000
Q ss_pred CCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhhhccchHH
Q 003378 244 PATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSA 323 (824)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~ 323 (824)
.. ..+. .|......
T Consensus 257 -----~~-----------------------------~g~~--------------------------------~wy~~i~~ 270 (478)
T PLN03126 257 -----IK-----------------------------RGDN--------------------------------KWVDKIYE 270 (478)
T ss_pred -----cc-----------------------------cCCC--------------------------------chhhhHHH
Confidence 00 0000 01111245
Q ss_pred HHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEE
Q 003378 324 LLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRI 403 (824)
Q Consensus 324 LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v 403 (824)
||+++.++.|.|.. +.+.||.++|..++..++.|. ++.+||.+|+|+.||.|++
T Consensus 271 Ll~~l~~~~~~p~r-------------------------~~~~p~r~~I~~vf~v~g~Gt-Vv~G~V~sG~i~~Gd~v~i 324 (478)
T PLN03126 271 LMDAVDSYIPIPQR-------------------------QTDLPFLLAVEDVFSITGRGT-VATGRVERGTVKVGETVDI 324 (478)
T ss_pred HHHHHHHhCCCCCC-------------------------ccccceeeEEEEEEEeCCceE-EEEEEEEcCeEecCCEEEE
Confidence 77777777776621 235789999999998888887 8999999999999999998
Q ss_pred cCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEE--eccccccccce-eeecC
Q 003378 404 MGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNE 462 (824)
Q Consensus 404 ~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai--~gl~~~~~~tg-Tl~~~ 462 (824)
.+. +.. ...+|+.|... ..++++|.|||.+++ .|++....+.| .||+.
T Consensus 325 ~p~----~~~---~~~~VksI~~~----~~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~~ 375 (478)
T PLN03126 325 VGL----RET---RSTTVTGVEMF----QKILDEALAGDNVGLLLRGIQKADIQRGMVLAKP 375 (478)
T ss_pred ecC----CCc---eEEEEEEEEEC----CeECCEEeCCceeeeeccCCcHHHcCCccEEecC
Confidence 632 111 12678888754 478999999999988 56655444567 77764
No 39
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.98 E-value=9.4e-31 Score=293.89 Aligned_cols=284 Identities=19% Similarity=0.293 Sum_probs=203.2
Q ss_pred CceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccc
Q 003378 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 5 ~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (824)
....++|++ +||+|||||||+++|++......+......+.+|..++|++||+|++++...+.+.
T Consensus 9 ~~~~~~i~i---~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~------------ 73 (394)
T TIGR00485 9 TKPHVNIGT---IGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETE------------ 73 (394)
T ss_pred CCceEEEEE---EeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCC------------
Confidence 367799999 99999999999999975532111100111347999999999999999887766543
Q ss_pred cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceE-EEEeCCCcchhcccCCH
Q 003378 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRCFLELQVDG 163 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~i-lviNKiD~~~~~~~~~~ 163 (824)
++.++|||||||.+|..++.+++..+|++++|||+.+|+..||++++..+...++|.+ +|+||||+. . .
T Consensus 74 ----~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~----~--~ 143 (394)
T TIGR00485 74 ----NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMV----D--D 143 (394)
T ss_pred ----CEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccC----C--H
Confidence 6789999999999999999999999999999999999999999999999999999977 689999987 3 2
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcccC
Q 003378 164 EEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFD 243 (824)
Q Consensus 164 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~~ 243 (824)
++.++ .+.++++..+..+.. .+...++.+.|++.|+.
T Consensus 144 ~~~~~---~~~~~i~~~l~~~~~--------~~~~~~ii~vSa~~g~~-------------------------------- 180 (394)
T TIGR00485 144 EELLE---LVEMEVRELLSEYDF--------PGDDTPIIRGSALKALE-------------------------------- 180 (394)
T ss_pred HHHHH---HHHHHHHHHHHhcCC--------CccCccEEECccccccc--------------------------------
Confidence 33332 233344444543221 11111333444432210
Q ss_pred CCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhhhccchHH
Q 003378 244 PATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSA 323 (824)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~ 323 (824)
+. . -| ++ ....
T Consensus 181 ------------g~---~---------~~--~~-------------------------------------------~~~~ 191 (394)
T TIGR00485 181 ------------GD---A---------EW--EA-------------------------------------------KILE 191 (394)
T ss_pred ------------cC---C---------ch--hH-------------------------------------------hHHH
Confidence 00 0 01 00 0145
Q ss_pred HHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEE
Q 003378 324 LLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRI 403 (824)
Q Consensus 324 LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v 403 (824)
||+++.+++|.|. .+.+.||.++|+.++..++.|. ++.+||.||+|+.||.|++
T Consensus 192 ll~~l~~~~~~~~-------------------------~~~~~p~r~~V~~vf~~~g~G~-Vv~G~v~~G~l~~gd~v~i 245 (394)
T TIGR00485 192 LMDAVDEYIPTPE-------------------------RETDKPFLMPIEDVFSITGRGT-VVTGRVERGIVKVGEEVEI 245 (394)
T ss_pred HHHHHHhcCCCCC-------------------------CCCCCCeEEEEEEEEeeCCceE-EEEEEEEeeEEeCCCEEEE
Confidence 7777877888772 1235799999999999888887 9999999999999999998
Q ss_pred cCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEE--eccccccccce-eeecC
Q 003378 404 MGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNE 462 (824)
Q Consensus 404 ~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai--~gl~~~~~~tg-Tl~~~ 462 (824)
.+.. .+. ..+|+.|... ..++++|.|||.|++ .|++....+.| +||+.
T Consensus 246 ~p~~--~~~-----~~~VksI~~~----~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~~~ 296 (394)
T TIGR00485 246 VGLK--DTR-----KTTVTGVEMF----RKELDEGRAGDNVGLLLRGIKREEIERGMVLAKP 296 (394)
T ss_pred ecCC--CCc-----EEEEEEEEEC----CeEEEEECCCCEEEEEeCCccHHHCCccEEEecC
Confidence 6421 111 2688888763 467899999999976 67654334667 77764
No 40
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=5.7e-32 Score=277.63 Aligned_cols=282 Identities=22% Similarity=0.340 Sum_probs=205.7
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHH---HHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccc
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLV---AAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG 83 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll---~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 83 (824)
..+||+. +||+|||||||+.++- ...|...- -+..-.|.-|+|+.|||||+++.+.++..
T Consensus 53 PHvNVGT---IGHVDHGKTTLTaAITkila~~g~A~~---~kydeID~APEEkaRGITIn~aHveYeTa----------- 115 (449)
T KOG0460|consen 53 PHVNVGT---IGHVDHGKTTLTAAITKILAEKGGAKF---KKYDEIDKAPEEKARGITINAAHVEYETA----------- 115 (449)
T ss_pred Ccccccc---cccccCCchhHHHHHHHHHHhcccccc---ccHhhhhcChhhhhccceEeeeeeeeecc-----------
Confidence 3466766 9999999999999983 23332111 11345788999999999999887665543
Q ss_pred ccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceE-EEEeCCCcchhcccCC
Q 003378 84 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRCFLELQVD 162 (824)
Q Consensus 84 ~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~i-lviNKiD~~~~~~~~~ 162 (824)
..++--+|||||.||.++|+.+....|||||||.|.+|..+||++++-+|++-+++.| +|+||.|.+ . |
T Consensus 116 -----~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V----~-d 185 (449)
T KOG0460|consen 116 -----KRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLV----D-D 185 (449)
T ss_pred -----ccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEeccccc----C-C
Confidence 6678899999999999999999999999999999999999999999999999999965 789999987 2 2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCccc
Q 003378 163 GEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFF 242 (824)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~ 242 (824)
.++.+-.+. +++..|..|.. +-.+.+|..||++- .| -|
T Consensus 186 -~e~leLVEm---E~RElLse~gf--------~Gd~~PvI~GSAL~----------------------AL----eg---- 223 (449)
T KOG0460|consen 186 -PEMLELVEM---EIRELLSEFGF--------DGDNTPVIRGSALC----------------------AL----EG---- 223 (449)
T ss_pred -HHHHHHHHH---HHHHHHHHcCC--------CCCCCCeeecchhh----------------------hh----cC----
Confidence 333322222 45666665542 22344677777720 00 00
Q ss_pred CCCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhhhccchH
Q 003378 243 DPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASS 322 (824)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~ 322 (824)
.+++ +|. + .+.
T Consensus 224 --------------------------------------~~pe--------ig~---------------~--------aI~ 234 (449)
T KOG0460|consen 224 --------------------------------------RQPE--------IGL---------------E--------AIE 234 (449)
T ss_pred --------------------------------------CCcc--------ccH---------------H--------HHH
Confidence 0000 000 0 136
Q ss_pred HHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEE
Q 003378 323 ALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVR 402 (824)
Q Consensus 323 ~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~ 402 (824)
.|||++.+|+|.|. .+-+.||+..|-.++..+.+|. ++.+|+..|+||+|+++.
T Consensus 235 kLldavDsyip~P~-------------------------R~~~~pFl~pie~vfsI~GRGT-VvtGrlERG~lKkG~e~e 288 (449)
T KOG0460|consen 235 KLLDAVDSYIPTPE-------------------------RDLDKPFLLPIEDVFSIPGRGT-VVTGRLERGVLKKGDEVE 288 (449)
T ss_pred HHHHHHhccCCCcc-------------------------cccCCCceeehhheeeecCCce-EEEEEEeecccccCCEEE
Confidence 79999999999993 1346799999998988899998 999999999999999999
Q ss_pred EcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEE--eccccccccce-eeecCC
Q 003378 403 IMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNEK 463 (824)
Q Consensus 403 v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai--~gl~~~~~~tg-Tl~~~~ 463 (824)
++|.+.+. ...|+.|-++ ++.+++|.|||-+++ +|++..-++-| .++.+.
T Consensus 289 ivG~~~~l-------kttvtgiemF----~K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~~pG 341 (449)
T KOG0460|consen 289 IVGHNKTL-------KTTVTGIEMF----RKSLDEAQAGDNLGALLRGIKREDVKRGMVLAKPG 341 (449)
T ss_pred EeccCcce-------eeEeehHHHH----HHHHHhcccccceehhhhcCCHHHHhcccEEecCC
Confidence 98754221 1456655544 366899999999875 68776555677 666544
No 41
>PRK00049 elongation factor Tu; Reviewed
Probab=99.97 E-value=1.7e-30 Score=291.26 Aligned_cols=285 Identities=20% Similarity=0.303 Sum_probs=205.8
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +||+|||||||+++|++...............+|+.++|++||+|++++...+.+.
T Consensus 10 ~~~~ni~i---iGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~------------- 73 (396)
T PRK00049 10 KPHVNVGT---IGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETE------------- 73 (396)
T ss_pred CCEEEEEE---EeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCC-------------
Confidence 67789999 99999999999999987532211100111237899999999999999887665543
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceE-EEEeCCCcchhcccCCHH
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRCFLELQVDGE 164 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~i-lviNKiD~~~~~~~~~~~ 164 (824)
++.++|||||||.+|..++..++..+|++++|||+.+|+..||+++|.++...++|.+ +++||||+. . .+
T Consensus 74 ---~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~----~--~~ 144 (396)
T PRK00049 74 ---KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMV----D--DE 144 (396)
T ss_pred ---CeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCc----c--hH
Confidence 6789999999999999999999999999999999999999999999999999999986 589999997 4 23
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcccCC
Q 003378 165 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 244 (824)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~~~ 244 (824)
+.++ .+.++++..+..+.. .+...++.+.|++.||...
T Consensus 145 ~~~~---~~~~~i~~~l~~~~~--------~~~~~~iv~iSa~~g~~~~------------------------------- 182 (396)
T PRK00049 145 ELLE---LVEMEVRELLSKYDF--------PGDDTPIIRGSALKALEGD------------------------------- 182 (396)
T ss_pred HHHH---HHHHHHHHHHHhcCC--------CccCCcEEEeecccccCCC-------------------------------
Confidence 3332 233345555543211 1111234445665443100
Q ss_pred CCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhhhccchHHH
Q 003378 245 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSAL 324 (824)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~L 324 (824)
.. ..|......|
T Consensus 183 ~~--------------------------------------------------------------------~~w~~~~~~l 194 (396)
T PRK00049 183 DD--------------------------------------------------------------------EEWEKKILEL 194 (396)
T ss_pred Cc--------------------------------------------------------------------ccccccHHHH
Confidence 00 0011112568
Q ss_pred HHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEEc
Q 003378 325 LEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIM 404 (824)
Q Consensus 325 Ld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~ 404 (824)
|+++.+++|.|.. +.+.||.++|..++..++.|. ++.+||.+|++++||.|+++
T Consensus 195 l~~l~~~~~~p~~-------------------------~~~~p~r~~I~~~f~v~g~G~-Vv~G~v~~G~i~~gd~v~i~ 248 (396)
T PRK00049 195 MDAVDSYIPTPER-------------------------AIDKPFLMPIEDVFSISGRGT-VVTGRVERGIIKVGEEVEIV 248 (396)
T ss_pred HHHHHhcCCCCCC-------------------------CCCCCeEEEEEEEEeeCCceE-EEEEEEeeeEEecCCEEEEe
Confidence 8888888887721 235799999999988888886 99999999999999999987
Q ss_pred CCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEE--eccccccccce-eeecC
Q 003378 405 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNE 462 (824)
Q Consensus 405 ~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai--~gl~~~~~~tg-Tl~~~ 462 (824)
+.. .+. ..+|+.|... .+++++|.|||.+++ .|++....+.| +||+.
T Consensus 249 p~~--~~~-----~~~VksI~~~----~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~~ 298 (396)
T PRK00049 249 GIR--DTQ-----KTTVTGVEMF----RKLLDEGQAGDNVGALLRGIKREDVERGQVLAKP 298 (396)
T ss_pred ecC--CCc-----eEEEEEEEEC----CcEeCEEcCCCEEEEEeCCCCHHHCCcceEEecC
Confidence 532 111 2678888753 367999999999988 56654334567 77764
No 42
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.97 E-value=7.2e-31 Score=280.37 Aligned_cols=251 Identities=26% Similarity=0.366 Sum_probs=195.2
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCc----eeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGD----VRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~----~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
+|++ +||+|+|||||+++|++..|.+.+ .|+ ++.+|+.++|++|++|+..+...+.|.
T Consensus 1 ni~i---vG~~gsGKStL~~~Ll~~~g~~~~--~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~------------- 62 (268)
T cd04170 1 NIAL---VGHSGSGKTTLAEALLYATGAIDR--LGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWK------------- 62 (268)
T ss_pred CEEE---ECCCCCCHHHHHHHHHHhcCCCcc--CCeecCCcccCCCCHHHHhhcccccceeEEEEEC-------------
Confidence 5788 999999999999999999987765 332 467899999999999999999999886
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCHHH
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 165 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~ 165 (824)
++.+++||||||.+|..++..+++.+|++++|+|+..|...++..+|+++...++|+++|+||+|+. +.+.++
T Consensus 63 ---~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~----~~~~~~ 135 (268)
T cd04170 63 ---GHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRE----RADFDK 135 (268)
T ss_pred ---CEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccC----CCCHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999999 877555
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccC--ccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcccC
Q 003378 166 AYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAG--LHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFD 243 (824)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~--~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~~ 243 (824)
..+.+++. +.. .+...++|...+ ..|+ +|......+.|.+
T Consensus 136 ~~~~l~~~-------~~~-----------~~~~~~ip~~~~~~~~~~----------------vd~~~~~~~~~~~---- 177 (268)
T cd04170 136 TLAALQEA-------FGR-----------PVVPLQLPIGEGDDFKGV----------------VDLLTEKAYIYSP---- 177 (268)
T ss_pred HHHHHHHH-------hCC-----------CeEEEEecccCCCceeEE----------------EEcccCEEEEccC----
Confidence 44443332 210 011124454443 1111 3444444444421
Q ss_pred CCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-hhhccc--
Q 003378 244 PATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA-- 320 (824)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~-- 320 (824)
+ +.... .+.+....+.+.+.+.+|+|.+++.|+++|++||++ .+++.+|+. +.|.+++. +.++|+
T Consensus 178 -~-~~~~~-----~~~p~~~~~~~~~~~~~l~e~~a~~dd~l~e~yl~~--~~~~~~~l~---~~l~~~~~~~~~~pv~~ 245 (268)
T cd04170 178 -G-APSEE-----IEIPEELKEEVAEAREELLEAVAETDDELMEKYLEG--GELTEEELH---AGLRRALRAGLLVPVLC 245 (268)
T ss_pred -C-Cccee-----ccCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhCC--CCCCHHHHH---HHHHHHHHhCCEEEEEE
Confidence 1 11111 123445566666778899999999999999999997 789999997 46666665 678887
Q ss_pred --------hHHHHHHHHhcCCCc
Q 003378 321 --------SSALLEMMIFHLPSP 335 (824)
Q Consensus 321 --------~~~LLd~i~~~lPsP 335 (824)
++.|||++.+|+|+|
T Consensus 246 gSa~~~~G~~~ll~~~~~~~p~p 268 (268)
T cd04170 246 GSALTNIGVRELLDALVHLLPSP 268 (268)
T ss_pred eeCCCCcCHHHHHHHHHHhCCCC
Confidence 899999999999998
No 43
>PLN03127 Elongation factor Tu; Provisional
Probab=99.97 E-value=1.1e-29 Score=286.96 Aligned_cols=288 Identities=20% Similarity=0.291 Sum_probs=202.0
Q ss_pred CceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccc
Q 003378 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 5 ~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (824)
+...++|++ +||+|||||||+++|.................+|..++|++||+|++++...+.+.
T Consensus 58 ~k~~~ni~i---iGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~------------ 122 (447)
T PLN03127 58 TKPHVNVGT---IGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETA------------ 122 (447)
T ss_pred CCceEEEEE---ECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCC------------
Confidence 367799999 99999999999999964321110000111226899999999999999987776654
Q ss_pred cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCce-EEEEeCCCcchhcccCCH
Q 003378 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRCFLELQVDG 163 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~-ilviNKiD~~~~~~~~~~ 163 (824)
+++++|||||||.+|..++.+++..+|++++|||+.+|+..||++++.++...++|. |+++||||+. . .
T Consensus 123 ----~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv----~--~ 192 (447)
T PLN03127 123 ----KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVV----D--D 192 (447)
T ss_pred ----CeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccC----C--H
Confidence 679999999999999999999999999999999999999999999999999999995 6889999987 3 2
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcccC
Q 003378 164 EEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFD 243 (824)
Q Consensus 164 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~~ 243 (824)
++.++.++ ++++..+..+.. .+..-++...|++.++. |+
T Consensus 193 ~~~~~~i~---~~i~~~l~~~~~--------~~~~vpiip~Sa~sa~~--------------------------g~---- 231 (447)
T PLN03127 193 EELLELVE---MELRELLSFYKF--------PGDEIPIIRGSALSALQ--------------------------GT---- 231 (447)
T ss_pred HHHHHHHH---HHHHHHHHHhCC--------CCCcceEEEeccceeec--------------------------CC----
Confidence 33333333 233333332111 01111222234421110 00
Q ss_pred CCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhhhccchHH
Q 003378 244 PATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSA 323 (824)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~ 323 (824)
|.....+ ....
T Consensus 232 --------------------------------------------------n~~~~~~-------------------~i~~ 242 (447)
T PLN03127 232 --------------------------------------------------NDEIGKN-------------------AILK 242 (447)
T ss_pred --------------------------------------------------Ccccccc-------------------hHHH
Confidence 0000000 0246
Q ss_pred HHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEE
Q 003378 324 LLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRI 403 (824)
Q Consensus 324 LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v 403 (824)
|++++.+++|.|.. +.++||.++|..++..++.|. ++.+||.+|+|+.||.|++
T Consensus 243 Ll~~l~~~lp~p~r-------------------------~~~~pfr~~I~~vf~v~g~Gt-VvtG~v~~G~i~~Gd~v~i 296 (447)
T PLN03127 243 LMDAVDEYIPEPVR-------------------------VLDKPFLMPIEDVFSIQGRGT-VATGRVEQGTIKVGEEVEI 296 (447)
T ss_pred HHHHHHHhCCCCCc-------------------------ccccceEeeEEEEEEcCCceE-EEEEEEEccEEecCCEEEE
Confidence 78888888998721 234789999999888888886 9999999999999999998
Q ss_pred cCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEE--eccccccccce-eeecC
Q 003378 404 MGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNE 462 (824)
Q Consensus 404 ~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai--~gl~~~~~~tg-Tl~~~ 462 (824)
++++.. +. ...+|+.|... ..++++|.|||.+++ .|++....+.| .||+.
T Consensus 297 ~p~~~~-g~----~~~~VksI~~~----~~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~~ 349 (447)
T PLN03127 297 VGLRPG-GP----LKTTVTGVEMF----KKILDQGQAGDNVGLLLRGLKREDVQRGQVICKP 349 (447)
T ss_pred cccCCC-Cc----EEEEEEEEEEE----CcEeCEEcCCCEEEEEeCCCCHHHCCCccEEecC
Confidence 764321 11 12688888764 356999999999987 56655444667 77764
No 44
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.97 E-value=1.5e-29 Score=299.55 Aligned_cols=314 Identities=18% Similarity=0.243 Sum_probs=225.9
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.++..|++ +||+|||||||+++|.. +.+.. ...+|+|+......+.|.
T Consensus 288 ~R~pvV~I---mGhvd~GKTSLl~~Lr~--~~v~~--------------~e~~GIT~~iga~~v~~~------------- 335 (787)
T PRK05306 288 PRPPVVTI---MGHVDHGKTSLLDAIRK--TNVAA--------------GEAGGITQHIGAYQVETN------------- 335 (787)
T ss_pred cCCCEEEE---ECCCCCCHHHHHHHHHh--CCccc--------------cccCceeeeccEEEEEEC-------------
Confidence 57788999 99999999999999942 11111 114689998888888775
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCHHH
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 165 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~ 165 (824)
++.|+|||||||.+|...+.++++.+|++|||||+.+|+.+||.++|.++...++|+|+|+||||+. +++++.
T Consensus 336 ---~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~----~a~~e~ 408 (787)
T PRK05306 336 ---GGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKP----GANPDR 408 (787)
T ss_pred ---CEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECcccc----ccCHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999998 777555
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcccCCC
Q 003378 166 AYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 245 (824)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~~~~ 245 (824)
+...+.. .+.....|. ++ .++...|+..|++.
T Consensus 409 V~~eL~~----~~~~~e~~g----~~-------vp~vpvSAktG~GI--------------------------------- 440 (787)
T PRK05306 409 VKQELSE----YGLVPEEWG----GD-------TIFVPVSAKTGEGI--------------------------------- 440 (787)
T ss_pred HHHHHHH----hcccHHHhC----CC-------ceEEEEeCCCCCCc---------------------------------
Confidence 4433322 111111110 00 01222344332211
Q ss_pred CCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhhhccchHHHH
Q 003378 246 TRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALL 325 (824)
Q Consensus 246 ~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LL 325 (824)
..|+
T Consensus 441 ----------------------------------------------------------------------------~eLl 444 (787)
T PRK05306 441 ----------------------------------------------------------------------------DELL 444 (787)
T ss_pred ----------------------------------------------------------------------------hHHH
Confidence 0111
Q ss_pred HHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEEcC
Q 003378 326 EMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMG 405 (824)
Q Consensus 326 d~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~~ 405 (824)
+++... + +... ..++++.|+.++||++..+++.|. ++++||++|+|+.||.|++.
T Consensus 445 e~I~~~--~--e~~~-------------------l~~~~~~~~~g~V~es~~dkg~G~-v~~v~V~sGtLk~Gd~vv~g- 499 (787)
T PRK05306 445 EAILLQ--A--EVLE-------------------LKANPDRPARGTVIEAKLDKGRGP-VATVLVQNGTLKVGDIVVAG- 499 (787)
T ss_pred Hhhhhh--h--hhhh-------------------cccCCCCCcEEEEEEEEEcCCCeE-EEEEEEecCeEecCCEEEEC-
Confidence 111100 0 0000 013456889999999999998887 99999999999999999851
Q ss_pred CCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCC-------------------
Q 003378 406 PNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEV------------------- 465 (824)
Q Consensus 406 ~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~------------------- 465 (824)
.+.++|+.+.+....++++|.|||+|+|.||+... .+| ||+...+.
T Consensus 500 -------------~~~gkVr~m~~~~~~~v~~A~pGd~V~I~gl~~~p-~~Gd~l~~~~~e~~a~~~~~~r~~~~~~~~~ 565 (787)
T PRK05306 500 -------------TTYGRVRAMVDDNGKRVKEAGPSTPVEILGLSGVP-QAGDEFVVVEDEKKAREIAEYRQEKAREKKL 565 (787)
T ss_pred -------------CcEEEEEEEECCCCCCCCEEcCCCeEEEeCCCCCC-CCCCEEEEcCCHHHHHHHHHHHHHHHHHHHh
Confidence 24678888888888899999999999999998752 467 88733210
Q ss_pred ---Ccccccccccc----CCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCceEEEecCCCcEEEEecchHH
Q 003378 466 ---DAHPIRAMKFS----VSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELH 529 (824)
Q Consensus 466 ---~~~~~~~~~~~----~~Pv~~~aVep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g~GElH 529 (824)
....+..+..+ ..+.+.+.|.+...+..++|..+|.+|..+++.+++ +-+|.|.+.
T Consensus 566 ~~~~~~~l~~~~~~~~~~~~~~~~~iikad~~Gs~eai~~~l~~l~~~~v~~~i--------~~~~vG~it 628 (787)
T PRK05306 566 ARQQRVSLENLFEQMKEGEVKELNLIIKADVQGSVEALKDSLEKLSTDEVKVNI--------IHSGVGAIT 628 (787)
T ss_pred hhccccCHHHhhhhhhcCCceEEEEEEEeCCcchHHHHHHHHHhhcccCCceEE--------EeeccCCCC
Confidence 00112222111 123689999999999999999999999999999877 445666663
No 45
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.3e-30 Score=263.08 Aligned_cols=282 Identities=21% Similarity=0.334 Sum_probs=197.4
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...+||+. +||+|||||||+.++.......-....-.....|..|+|++|||||+.+.+.++..
T Consensus 10 kphVNigt---iGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~------------- 73 (394)
T COG0050 10 KPHVNVGT---IGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETA------------- 73 (394)
T ss_pred CCeeEEEE---eccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecC-------------
Confidence 44577777 99999999999999943211100000111335788999999999999998877664
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceE-EEEeCCCcchhcccCCHH
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRCFLELQVDGE 164 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~i-lviNKiD~~~~~~~~~~~ 164 (824)
+.++..+|||||.||.++|+.+...+|+|||||+|.+|.++||++++-.+++.++|.| +|+||+|++ . | .
T Consensus 74 ---~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmv----d-d-~ 144 (394)
T COG0050 74 ---NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMV----D-D-E 144 (394)
T ss_pred ---CceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEeccccc----C-c-H
Confidence 7789999999999999999999999999999999999999999999999999999865 789999998 3 2 2
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcccCC
Q 003378 165 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 244 (824)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~~~ 244 (824)
++.+- .-.+++.+|+.|.- .-...+|+.+|++. .
T Consensus 145 ellel---VemEvreLLs~y~f--------~gd~~Pii~gSal~--------------------------a--------- 178 (394)
T COG0050 145 ELLEL---VEMEVRELLSEYGF--------PGDDTPIIRGSALK--------------------------A--------- 178 (394)
T ss_pred HHHHH---HHHHHHHHHHHcCC--------CCCCcceeechhhh--------------------------h---------
Confidence 32222 22255666665431 11222455555520 0
Q ss_pred CCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhhhccchHHH
Q 003378 245 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSAL 324 (824)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~L 324 (824)
.+.++. |...+..|
T Consensus 179 ----------------------------------le~~~~--------------------------------~~~~i~eL 192 (394)
T COG0050 179 ----------------------------------LEGDAK--------------------------------WEAKIEEL 192 (394)
T ss_pred ----------------------------------hcCCcc--------------------------------hHHHHHHH
Confidence 000000 11123679
Q ss_pred HHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEEc
Q 003378 325 LEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIM 404 (824)
Q Consensus 325 Ld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~ 404 (824)
|+++.+|+|.|. .+.+.||.+.|-.++.....|. ++++||-.|+|+.|+++.+.
T Consensus 193 m~avd~yip~Pe-------------------------r~~dkPflmpvEdvfsIsgrgt-vvtGrVeRG~lkvg~eveiv 246 (394)
T COG0050 193 MDAVDSYIPTPE-------------------------RDIDKPFLMPVEDVFSISGRGT-VVTGRVERGILKVGEEVEIV 246 (394)
T ss_pred HHHHHhcCCCCC-------------------------CcccccccccceeeEEEcCcee-EEEEEEeeeeeccCCEEEEe
Confidence 999999999993 2346899999988888888887 99999999999999999987
Q ss_pred CCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEE--eccccccccce-eeec
Q 003378 405 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTN 461 (824)
Q Consensus 405 ~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai--~gl~~~~~~tg-Tl~~ 461 (824)
|-. .+ .+ ..+..+-++ ++..++..|||-+++ +|.+.--+.-| .|+-
T Consensus 247 G~~-~~-~k-----ttvtgvemf----rk~ld~~~AGdnvg~llRg~~r~~veRGqvLak 295 (394)
T COG0050 247 GIK-ET-QK-----TTVTGVEMF----RKLLDEGQAGDNVGVLLRGVKREDVERGQVLAK 295 (394)
T ss_pred ccc-cc-ce-----eEEEhHHHH----HHHHhccccCCCcceEEEeccccceecceEeec
Confidence 632 11 11 233333222 355788999998765 45543323345 5544
No 46
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.97 E-value=2.6e-29 Score=282.66 Aligned_cols=128 Identities=30% Similarity=0.330 Sum_probs=116.4
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCccccc----------CCc-------eeecCChhhHhHhccceeeceEEEEE
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV----------AGD-------VRMTDTRQDEAERGITIKSTGISLYY 71 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~----------~g~-------~~~~D~~~~E~~rgiTi~~~~~~~~~ 71 (824)
++|++ +||+|||||||+++||+.+|.++++. .|+ .+++|+.++|++||+|++.+...+.|
T Consensus 1 ~~~~~---vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~ 77 (406)
T TIGR02034 1 LRFLT---CGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST 77 (406)
T ss_pred CeEEE---ECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc
Confidence 47888 99999999999999999999887632 343 35899999999999999999988888
Q ss_pred eechhhhhccccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCc-eEEEEe
Q 003378 72 EMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVN 150 (824)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p-~ilviN 150 (824)
. +++++|||||||.+|..++..++..+|+||+|||+.+|+..||+++|..+...++| +|+|+|
T Consensus 78 ~----------------~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviN 141 (406)
T TIGR02034 78 D----------------KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVN 141 (406)
T ss_pred C----------------CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEE
Confidence 5 78999999999999999999999999999999999999999999999999988887 567999
Q ss_pred CCCcc
Q 003378 151 KMDRC 155 (824)
Q Consensus 151 KiD~~ 155 (824)
|||+.
T Consensus 142 K~D~~ 146 (406)
T TIGR02034 142 KMDLV 146 (406)
T ss_pred ecccc
Confidence 99998
No 47
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.97 E-value=3.4e-29 Score=284.57 Aligned_cols=285 Identities=23% Similarity=0.337 Sum_probs=206.6
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCccccc----------CCc-----eeecCChhhHhHhccceeeceEEEE
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRQDEAERGITIKSTGISLY 70 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~----------~g~-----~~~~D~~~~E~~rgiTi~~~~~~~~ 70 (824)
...++|++ +||+|||||||+++|++..|.++... .|. .+++|+.++|++||+|++.....+.
T Consensus 4 k~~~~v~i---iGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~ 80 (425)
T PRK12317 4 KPHLNLAV---IGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE 80 (425)
T ss_pred CCEEEEEE---ECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe
Confidence 56799999 99999999999999999999886531 243 3589999999999999999998887
Q ss_pred EeechhhhhccccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCC--CcchhHHHHHHHHHhCCCc-eEE
Q 003378 71 YEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE--GVCVQTETVLRQALGERIR-PVL 147 (824)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~--gv~~~t~~~l~~~~~~~~p-~il 147 (824)
++ ++.++|||||||.+|..++..+++.+|++|+|||+.+ |+..++..++..+...++| +++
T Consensus 81 ~~----------------~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iiv 144 (425)
T PRK12317 81 TD----------------KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIV 144 (425)
T ss_pred cC----------------CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEE
Confidence 75 7899999999999999999999999999999999999 9999999999999888875 678
Q ss_pred EEeCCCcchhcccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCC
Q 003378 148 TVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGV 227 (824)
Q Consensus 148 viNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~i 227 (824)
|+||||+. +.+.+ .+..+.++++..+..+. +.+...++...|+..|.+..-.
T Consensus 145 viNK~Dl~----~~~~~----~~~~~~~~i~~~l~~~g--------~~~~~~~ii~iSA~~g~gi~~~------------ 196 (425)
T PRK12317 145 AINKMDAV----NYDEK----RYEEVKEEVSKLLKMVG--------YKPDDIPFIPVSAFEGDNVVKK------------ 196 (425)
T ss_pred EEEccccc----cccHH----HHHHHHHHHHHHHHhhC--------CCcCcceEEEeecccCCCcccc------------
Confidence 99999998 54422 23334444444443221 1111113445566554322000
Q ss_pred ChHHHHHHhhcCcccCCCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHH
Q 003378 228 DESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGK 307 (824)
Q Consensus 228 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~ 307 (824)
.. ..- | | ++
T Consensus 197 --~~--~~~-----------------------------------w--y---------------~g--------------- 205 (425)
T PRK12317 197 --SE--NMP-----------------------------------W--Y---------------NG--------------- 205 (425)
T ss_pred --cc--CCC-----------------------------------c--c---------------cH---------------
Confidence 00 000 1 1 00
Q ss_pred HHHHHHHhhhccchHHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeE
Q 003378 308 ALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAF 387 (824)
Q Consensus 308 ~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~ 387 (824)
..|++++ +.+|.|.. +.+.||.++|..++..+..|. +..
T Consensus 206 --------------~~L~~~l-~~~~~~~~-------------------------~~~~p~r~~i~~~~~~~g~G~-vv~ 244 (425)
T PRK12317 206 --------------PTLLEAL-DNLKPPEK-------------------------PTDKPLRIPIQDVYSISGVGT-VPV 244 (425)
T ss_pred --------------HHHHHHH-hcCCCCcc-------------------------ccCCCcEEEEEEEEeeCCCeE-EEE
Confidence 3455554 34566510 235789999999988888786 899
Q ss_pred EEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEE--eccccccccce-eeecC
Q 003378 388 GRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNE 462 (824)
Q Consensus 388 ~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai--~gl~~~~~~tg-Tl~~~ 462 (824)
+||.+|+|+.||.|++++.+ . ..+|+.|... ..++++|.|||.|++ .|++....+.| .|++.
T Consensus 245 G~v~~G~v~~Gd~v~i~P~~----~-----~~~VksI~~~----~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~ 309 (425)
T PRK12317 245 GRVETGVLKVGDKVVFMPAG----V-----VGEVKSIEMH----HEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHP 309 (425)
T ss_pred EEEeeccEecCCEEEECCCC----C-----eEEEEEEEEC----CcccCEECCCCeEEEEECCCCHHHccCccEecCC
Confidence 99999999999999986432 1 2688888753 467999999999976 45543333567 66654
No 48
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.97 E-value=9.6e-29 Score=282.10 Aligned_cols=135 Identities=27% Similarity=0.287 Sum_probs=120.4
Q ss_pred CceeeEEEeecCccCCCCCHHHHHHHHHHHcCCccccc----------CCce-------eecCChhhHhHhccceeeceE
Q 003378 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV----------AGDV-------RMTDTRQDEAERGITIKSTGI 67 (824)
Q Consensus 5 ~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~----------~g~~-------~~~D~~~~E~~rgiTi~~~~~ 67 (824)
....++|++ +||+|||||||+++||+.+|.++... .|++ +++|+.++|++||+|++++..
T Consensus 24 ~~~~~~i~i---iGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~ 100 (474)
T PRK05124 24 HKSLLRFLT---CGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYR 100 (474)
T ss_pred ccCceEEEE---ECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEE
Confidence 467799999 99999999999999999999887631 3432 489999999999999999988
Q ss_pred EEEEeechhhhhccccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCc-eE
Q 003378 68 SLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PV 146 (824)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p-~i 146 (824)
.+.|. ++.++|||||||.+|..++..+++.+|+||+|||+.+|+..||++++..+...+++ +|
T Consensus 101 ~~~~~----------------~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iI 164 (474)
T PRK05124 101 YFSTE----------------KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLV 164 (474)
T ss_pred EeccC----------------CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceE
Confidence 88775 77999999999999999999999999999999999999999999999999888875 56
Q ss_pred EEEeCCCcchhcccCC
Q 003378 147 LTVNKMDRCFLELQVD 162 (824)
Q Consensus 147 lviNKiD~~~~~~~~~ 162 (824)
+|+||||+. +++
T Consensus 165 vvvNKiD~~----~~~ 176 (474)
T PRK05124 165 VAVNKMDLV----DYS 176 (474)
T ss_pred EEEEeeccc----cch
Confidence 899999998 655
No 49
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.96 E-value=6.5e-29 Score=256.22 Aligned_cols=196 Identities=42% Similarity=0.692 Sum_probs=172.7
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCccc---ccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQ---EVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~---~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
+|++ +||+|+|||||+++|++..+.+.. ...+..+++|..++|++||+|+......+.|.. .+
T Consensus 2 nv~i---iG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~-----------~~ 67 (213)
T cd04167 2 NVAI---AGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPD-----------SK 67 (213)
T ss_pred cEEE---EcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEc-----------CC
Confidence 6888 999999999999999999988763 223346789999999999999999999888752 12
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCHHHH
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 166 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~ 166 (824)
++.+.+++||||||.+|..++..+++.+|++|+|+|+.+|...+++.+++.+...++|.++|+||+|++..++..+.++.
T Consensus 68 ~~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~~ 147 (213)
T cd04167 68 GKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDA 147 (213)
T ss_pred CCEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHHH
Confidence 34689999999999999999999999999999999999999999998889888888999999999999877778888899
Q ss_pred HHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHh
Q 003378 167 YQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMY 221 (824)
Q Consensus 167 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~ 221 (824)
++++.++++++|..+..+..++ .+.|.|.++||.|+|+..||+|++++|+.+|
T Consensus 148 ~~~l~~~i~~~n~~~~~~~~~~--~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~ 200 (213)
T cd04167 148 YFKLRHIIDEVNNIIASFSTTL--SFLFSPENGNVCFASSKFGFCFTLESFAKKY 200 (213)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC--ceEeccCCCeEEEEecCCCeEEecHHHHhhh
Confidence 9999999999999987654332 3678999999999999999999999999988
No 50
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.96 E-value=3.4e-28 Score=276.32 Aligned_cols=286 Identities=23% Similarity=0.311 Sum_probs=204.6
Q ss_pred CceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccc----------cCCc-----eeecCChhhHhHhccceeeceEEE
Q 003378 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRQDEAERGITIKSTGISL 69 (824)
Q Consensus 5 ~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~----------~~g~-----~~~~D~~~~E~~rgiTi~~~~~~~ 69 (824)
+...++|++ +||+|||||||+++|++..|.++.. ..|. .+.+|..++|++||+|++.+...+
T Consensus 4 ~~~~~~v~i---~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~ 80 (426)
T TIGR00483 4 EKEHINVAF---IGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKF 80 (426)
T ss_pred CCceeEEEE---EeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEE
Confidence 467799999 9999999999999999999987642 1232 357999999999999999998888
Q ss_pred EEeechhhhhccccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCC---cchhHHHHHHHHHhCCCc-e
Q 003378 70 YYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG---VCVQTETVLRQALGERIR-P 145 (824)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~g---v~~~t~~~l~~~~~~~~p-~ 145 (824)
.+. ++.++|||||||.+|...+..+++.+|++|+|||+.+| ...++..++..+...+++ +
T Consensus 81 ~~~----------------~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~i 144 (426)
T TIGR00483 81 ETD----------------KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQL 144 (426)
T ss_pred ccC----------------CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeE
Confidence 775 78999999999999999999999999999999999999 888998888777777765 6
Q ss_pred EEEEeCCCcchhcccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhc
Q 003378 146 VLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKF 225 (824)
Q Consensus 146 ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~ 225 (824)
|+|+||+|+. +++.++ +..+.++++..+..+. +.+...++...|+..|++..-.
T Consensus 145 IVviNK~Dl~----~~~~~~----~~~~~~ei~~~~~~~g--------~~~~~~~~i~iSA~~g~ni~~~---------- 198 (426)
T TIGR00483 145 IVAINKMDSV----NYDEEE----FEAIKKEVSNLIKKVG--------YNPDTVPFIPISAWNGDNVIKK---------- 198 (426)
T ss_pred EEEEEChhcc----CccHHH----HHHHHHHHHHHHHHcC--------CCcccceEEEeecccccccccc----------
Confidence 6899999998 665332 3333444444443221 1111113444566555432000
Q ss_pred CCChHHHHHHhhcCcccCCCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHh
Q 003378 226 GVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELM 305 (824)
Q Consensus 226 ~id~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~ 305 (824)
+.. .| | | ++
T Consensus 199 -------------------------------------~~~---~~-w--~---------------~g------------- 207 (426)
T TIGR00483 199 -------------------------------------SEN---TP-W--Y---------------KG------------- 207 (426)
T ss_pred -------------------------------------ccC---Cc-c--c---------------cc-------------
Confidence 000 01 1 0 00
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcce
Q 003378 306 GKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFF 385 (824)
Q Consensus 306 ~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l 385 (824)
..|++++.+ +|.|. .+.+.||.++|..++..++.|. +
T Consensus 208 ----------------~~l~~~l~~-~~~~~-------------------------~~~~~p~r~~i~~v~~~~g~G~-v 244 (426)
T TIGR00483 208 ----------------KTLLEALDA-LEPPE-------------------------KPTDKPLRIPIQDVYSITGVGT-V 244 (426)
T ss_pred ----------------hHHHHHHhc-CCCCC-------------------------CccCCCcEEEEEEEEecCCCeE-E
Confidence 245666643 45441 1235799999999998888887 8
Q ss_pred eEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEE--eccccccccce-eeecC
Q 003378 386 AFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNE 462 (824)
Q Consensus 386 ~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai--~gl~~~~~~tg-Tl~~~ 462 (824)
+.+||.+|+|+.||.|.+.+.+ . ..+|+.|... ..++++|.|||.+++ .|++...++.| .|++.
T Consensus 245 v~G~v~~G~i~~gd~v~i~P~~----~-----~~~VksI~~~----~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~ 311 (426)
T TIGR00483 245 PVGRVETGVLKPGDKVVFEPAG----V-----SGEVKSIEMH----HEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHP 311 (426)
T ss_pred EEEEEccceeecCCEEEECCCC----c-----EEEEEEEEEC----CcccCEEcCCCEEEEEECCCChhhcccceEEecC
Confidence 9999999999999999986422 1 2688888753 367999999999987 45543334567 66654
No 51
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.96 E-value=3.4e-27 Score=274.00 Aligned_cols=306 Identities=20% Similarity=0.263 Sum_probs=213.3
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.++..|++ +||+|||||||+++|... .+.. ...+|+|+......+.|.
T Consensus 85 ~r~p~V~I---~Ghvd~GKTSLl~~l~~~--~v~~--------------~e~~GIT~~ig~~~v~~~------------- 132 (587)
T TIGR00487 85 ERPPVVTI---MGHVDHGKTSLLDSIRKT--KVAQ--------------GEAGGITQHIGAYHVENE------------- 132 (587)
T ss_pred cCCCEEEE---ECCCCCCHHHHHHHHHhC--Cccc--------------ccCCceeecceEEEEEEC-------------
Confidence 56778999 999999999999999421 1111 113578888887777774
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCHHH
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 165 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~ 165 (824)
++..++|||||||.+|...+.++++.+|++|+|||+.+|+.+||.++|+++...++|+|+++||+|+. ++++++
T Consensus 133 --~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~----~~~~e~ 206 (587)
T TIGR00487 133 --DGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKP----EANPDR 206 (587)
T ss_pred --CCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccc----cCCHHH
Confidence 13389999999999999999999999999999999999999999999999999999999999999998 777655
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcccCCC
Q 003378 166 AYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 245 (824)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~~~~ 245 (824)
+.+.+++ .......|. ++. ++...|++.|.++
T Consensus 207 v~~~L~~----~g~~~~~~~----~~~-------~~v~iSAktGeGI--------------------------------- 238 (587)
T TIGR00487 207 VKQELSE----YGLVPEDWG----GDT-------IFVPVSALTGDGI--------------------------------- 238 (587)
T ss_pred HHHHHHH----hhhhHHhcC----CCc-------eEEEEECCCCCCh---------------------------------
Confidence 4433322 111111110 000 1122233222110
Q ss_pred CCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhhhccchHHHH
Q 003378 246 TRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALL 325 (824)
Q Consensus 246 ~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LL 325 (824)
..|+
T Consensus 239 ----------------------------------------------------------------------------~eLl 242 (587)
T TIGR00487 239 ----------------------------------------------------------------------------DELL 242 (587)
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 0111
Q ss_pred HHHHh--cCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEE
Q 003378 326 EMMIF--HLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRI 403 (824)
Q Consensus 326 d~i~~--~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v 403 (824)
+.+.. .++.+ ..+++.|+.++|+++..+++.|. ++++||++|+|+.||.|.+
T Consensus 243 ~~I~~~~~~~~l-------------------------~~~~~~~~~~~V~ev~~~~g~G~-v~~~~V~~GtL~~Gd~iv~ 296 (587)
T TIGR00487 243 DMILLQSEVEEL-------------------------KANPNGQASGVVIEAQLDKGRGP-VATVLVQSGTLRVGDIVVV 296 (587)
T ss_pred Hhhhhhhhhccc-------------------------cCCCCCCceeEEEEEEEeCCCcE-EEEEEEEeCEEeCCCEEEE
Confidence 11110 00110 12456899999999999888887 9999999999999999975
Q ss_pred cCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCC-----------------
Q 003378 404 MGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEV----------------- 465 (824)
Q Consensus 404 ~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~----------------- 465 (824)
.+ . . .||..++...| ..+++|.||++|.|.|++.. ..+| +|+-..+.
T Consensus 297 ~~-~-----~-----~kVr~l~~~~g---~~v~~a~~g~~v~i~Gl~~~-p~aGd~~~~~~~e~~a~~~~~~r~~~~~~~ 361 (587)
T TIGR00487 297 GA-A-----Y-----GRVRAMIDENG---KSVKEAGPSKPVEILGLSDV-PAAGDEFIVFKDEKDARLVAEKRAGKLRQK 361 (587)
T ss_pred CC-C-----c-----cEEEEEECCCC---CCCCEECCCCEEEEeCCCCC-CCCCCEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 32 1 1 36666665444 56899999999999999875 2467 66522110
Q ss_pred -----Cccccccccc----cCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCceEEEe
Q 003378 466 -----DAHPIRAMKF----SVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSM 514 (824)
Q Consensus 466 -----~~~~~~~~~~----~~~Pv~~~aVep~~~~d~~kL~~aL~~L~~eDPsl~v~~ 514 (824)
....+..+.. ...|.+.+.|++...+..++|.++|.++..++|++.+..
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~viikad~~Gs~eal~~~l~~~~~~~~~~~v~~ 419 (587)
T TIGR00487 362 ALSRSVKVTLDNLFEQIKEGELKELNIILKADVQGSLEAIKNSLEKLNNEEVKVKVIH 419 (587)
T ss_pred hhhhccccchhHhhhhhhccCCceEEEEEEeCCcchHHHHHHHHHhhcccCCeEEEEE
Confidence 0011111111 124889999999999999999999999999999998753
No 52
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.96 E-value=3.2e-27 Score=266.28 Aligned_cols=134 Identities=23% Similarity=0.212 Sum_probs=105.5
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechh--hhh---c
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDA--ALK---S 80 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~--~~~---~ 80 (824)
..+++|++ +||+|||||||+.+| .| ..+|..++|++||||++..+..+.+...+. .+. .
T Consensus 32 ~~~~~ig~---~GHVDhGKTtLv~aL-----------tg--~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~ 95 (460)
T PTZ00327 32 QATINIGT---IGHVAHGKSTVVKAL-----------SG--VKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQS 95 (460)
T ss_pred CCcEEEEE---EccCCCCHHHHHHHH-----------hC--CCcccchhhHHhCCchhccccccccccCcccCCcccccc
Confidence 45678888 999999999999999 44 357888999999999998887664310000 000 0
Q ss_pred cc------c--ccC----CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCC-cchhHHHHHHHHHhCCCc-eE
Q 003378 81 YR------G--ERQ----GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-VCVQTETVLRQALGERIR-PV 146 (824)
Q Consensus 81 ~~------~--~~~----~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~g-v~~~t~~~l~~~~~~~~p-~i 146 (824)
+. . ... .-.+.++|||||||.+|..++.+++..+|+|++|||+.+| +++||++++..+...+++ +|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iI 175 (460)
T PTZ00327 96 YGSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHII 175 (460)
T ss_pred cCCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEE
Confidence 00 0 000 0135799999999999999999999999999999999997 899999999999889987 56
Q ss_pred EEEeCCCcc
Q 003378 147 LTVNKMDRC 155 (824)
Q Consensus 147 lviNKiD~~ 155 (824)
+|+||||+.
T Consensus 176 VvlNKiDlv 184 (460)
T PTZ00327 176 ILQNKIDLV 184 (460)
T ss_pred EEEeccccc
Confidence 899999987
No 53
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.95 E-value=3e-26 Score=268.96 Aligned_cols=318 Identities=18% Similarity=0.217 Sum_probs=215.9
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+...|++ +||+|||||||+++|....... +..+|+|.......+.|..
T Consensus 242 ~r~p~V~I---vGhvdvGKTSLld~L~~~~~~~----------------~e~~GiTq~i~~~~v~~~~------------ 290 (742)
T CHL00189 242 NRPPIVTI---LGHVDHGKTTLLDKIRKTQIAQ----------------KEAGGITQKIGAYEVEFEY------------ 290 (742)
T ss_pred ccCCEEEE---ECCCCCCHHHHHHHHHhccCcc----------------ccCCccccccceEEEEEEe------------
Confidence 56778999 9999999999999996543322 1235788877766666641
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCHHH
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 165 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~ 165 (824)
++.++.++|||||||.+|...+.++++.+|++|+|||+.+|+.+||.++|.++...++|+|+|+||+|++ +.+.++
T Consensus 291 ~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~----~~~~e~ 366 (742)
T CHL00189 291 KDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKA----NANTER 366 (742)
T ss_pred cCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCcc----ccCHHH
Confidence 2246899999999999999999999999999999999999999999999999999999999999999998 666443
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcccCCC
Q 003378 166 AYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 245 (824)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~~~~ 245 (824)
+.+.+.. .+.....+. + ..++...|+..|.+.
T Consensus 367 v~~eL~~----~~ll~e~~g----~-------~vpvv~VSAktG~GI--------------------------------- 398 (742)
T CHL00189 367 IKQQLAK----YNLIPEKWG----G-------DTPMIPISASQGTNI--------------------------------- 398 (742)
T ss_pred HHHHHHH----hccchHhhC----C-------CceEEEEECCCCCCH---------------------------------
Confidence 3322221 111110000 0 002223333222110
Q ss_pred CCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhhhccchHHHH
Q 003378 246 TRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALL 325 (824)
Q Consensus 246 ~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LL 325 (824)
..|+
T Consensus 399 ----------------------------------------------------------------------------deLl 402 (742)
T CHL00189 399 ----------------------------------------------------------------------------DKLL 402 (742)
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 1122
Q ss_pred HHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEEcC
Q 003378 326 EMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMG 405 (824)
Q Consensus 326 d~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~~ 405 (824)
+.++.+.+.+ + ..++++.|+.++||++..+++.|. ++++||++|+|+.||.|++.
T Consensus 403 e~I~~l~e~~-~----------------------lk~~~~~~~~g~V~e~~iD~~~G~-V~~~~V~sGtLr~GD~vv~g- 457 (742)
T CHL00189 403 ETILLLAEIE-D----------------------LKADPTQLAQGIILEAHLDKTKGP-VATILVQNGTLHIGDIIVIG- 457 (742)
T ss_pred Hhhhhhhhhh-c----------------------ccCCCCCCceEEEEEEEEcCCCce-EEEEEEEcCEEecCCEEEEC-
Confidence 2222111000 0 012456789999999999888887 99999999999999999852
Q ss_pred CCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCC-CCc----------------
Q 003378 406 PNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKE-VDA---------------- 467 (824)
Q Consensus 406 ~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~-~~~---------------- 467 (824)
.+.++++.+.+....++++|.||++|+|.||+.. ..+| +|.-..+ +.+
T Consensus 458 -------------~~~gkVr~m~~~~~~~v~~a~pgdiV~I~gl~~~-~~~Gd~l~v~~~e~~a~~~~~~~~~~~~~~~~ 523 (742)
T CHL00189 458 -------------TSYAKIRGMINSLGNKINLATPSSVVEIWGLSSV-PATGEHFQVFNSEKEAKLKIIKNKENNKKDTT 523 (742)
T ss_pred -------------CcceEEEEEEcCCCcCccEEcCCCceEecCcccC-CCCCCEEEEeCCHHHHHHHHHHHHHHHHHhhh
Confidence 1346777788888889999999999999999654 3677 5542221 000
Q ss_pred --cccc----cccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCceEEEecCCCcEEEEecchHH
Q 003378 468 --HPIR----AMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELH 529 (824)
Q Consensus 468 --~~~~----~~~~~~~Pv~~~aVep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g~GElH 529 (824)
..+. .+.....+.+.+-|.+...+-.+.|.++|.++..+.-.+. ++-+|.|.+.
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~EAi~~~l~~~~~~~v~i~--------i~~~~vG~it 583 (742)
T CHL00189 524 KRITLSTTKTINKKDNKKQINLIIKTDTQGSIEAIINSISQIPQKKVQLN--------ILYASLGEVT 583 (742)
T ss_pred cccchHHHHHHhhhcCCceeeEEEEeCCcchHHHHHHHHHhcCCCcEEEE--------EEEeecCCCC
Confidence 0000 0111124678888899999999999999988854432222 3556677664
No 54
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.95 E-value=1.9e-26 Score=273.83 Aligned_cols=132 Identities=29% Similarity=0.308 Sum_probs=118.0
Q ss_pred CceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccc----------cCCc-------eeecCChhhHhHhccceeeceE
Q 003378 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE----------VAGD-------VRMTDTRQDEAERGITIKSTGI 67 (824)
Q Consensus 5 ~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~----------~~g~-------~~~~D~~~~E~~rgiTi~~~~~ 67 (824)
....++|++ +||+|||||||+++|++..|.++.. ..|+ .+.+|..++|++||+|++.+..
T Consensus 21 ~~~~~~i~i---iGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~ 97 (632)
T PRK05506 21 RKSLLRFIT---CGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYR 97 (632)
T ss_pred CCCeeEEEE---ECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeee
Confidence 356689999 9999999999999999999988732 2443 2589999999999999999988
Q ss_pred EEEEeechhhhhccccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCc-eE
Q 003378 68 SLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PV 146 (824)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p-~i 146 (824)
.+.|. +.+++|||||||.+|..++..++..+|++++|||+.+|+..||++++..+...+++ +|
T Consensus 98 ~~~~~----------------~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~ii 161 (632)
T PRK05506 98 YFATP----------------KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVV 161 (632)
T ss_pred EEccC----------------CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEE
Confidence 88775 77899999999999999999999999999999999999999999999999888875 56
Q ss_pred EEEeCCCcc
Q 003378 147 LTVNKMDRC 155 (824)
Q Consensus 147 lviNKiD~~ 155 (824)
+|+||||+.
T Consensus 162 vvvNK~D~~ 170 (632)
T PRK05506 162 LAVNKMDLV 170 (632)
T ss_pred EEEEecccc
Confidence 799999998
No 55
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=2.1e-26 Score=253.33 Aligned_cols=286 Identities=23% Similarity=0.316 Sum_probs=209.1
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccc----------cCCc-----eeecCChhhHhHhccceeeceEEEEE
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRQDEAERGITIKSTGISLYY 71 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~----------~~g~-----~~~~D~~~~E~~rgiTi~~~~~~~~~ 71 (824)
-.++.++ +||+|+|||||..+|||..|.++.+ ..|+ .|++|...+||+||+|++.....|+-
T Consensus 176 ~~l~lvv---~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 176 DHLNLVV---LGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred cceEEEE---EeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 4567777 9999999999999999999988764 2343 57999999999999999999988875
Q ss_pred eechhhhhccccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCC-------cchhHHHHHHHHHhCCCc
Q 003378 72 EMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQALGERIR 144 (824)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~g-------v~~~t~~~l~~~~~~~~p 144 (824)
. .+.++|+|+|||-||..+|+.+...+|.|||||||+-| ...||+++...++..|+.
T Consensus 253 ~----------------~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~ 316 (603)
T KOG0458|consen 253 K----------------SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGIS 316 (603)
T ss_pred C----------------ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcc
Confidence 3 88999999999999999999999999999999999965 578999999999999996
Q ss_pred -eEEEEeCCCcchhcccCCHHHHHHHHHHHHHHhhhhhh-hccCCCCCCceeecccceeecccCccceeeehhhHHHHhh
Q 003378 145 -PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMA-TYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYA 222 (824)
Q Consensus 145 -~ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~ 222 (824)
.|++|||||.+ +|+ .++|++|...++.+|. +.+-. ..++.|.| +||+.|-+.
T Consensus 317 qlivaiNKmD~V----~Ws----q~RF~eIk~~l~~fL~~~~gf~-es~v~FIP-------iSGl~GeNL---------- 370 (603)
T KOG0458|consen 317 QLIVAINKMDLV----SWS----QDRFEEIKNKLSSFLKESCGFK-ESSVKFIP-------ISGLSGENL---------- 370 (603)
T ss_pred eEEEEeeccccc----Ccc----HHHHHHHHHHHHHHHHHhcCcc-cCCcceEe-------cccccCCcc----------
Confidence 56889999999 888 4568888888888883 32111 01233333 344433211
Q ss_pred hhcCCChHHHHHHhhcCcccCCCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHH
Q 003378 223 SKFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEK 302 (824)
Q Consensus 223 ~~~~id~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el 302 (824)
+ +. .++..+.++.++
T Consensus 371 -------------------~--------k~----------------------------~~~~~l~~WY~G---------- 385 (603)
T KOG0458|consen 371 -------------------I--------KI----------------------------EQENELSQWYKG---------- 385 (603)
T ss_pred -------------------c--------cc----------------------------ccchhhhhhhcC----------
Confidence 0 00 011122223333
Q ss_pred HHhHHHHHHHHHhhhccchHHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCC
Q 003378 303 ELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKG 382 (824)
Q Consensus 303 ~~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g 382 (824)
..||+.|-. +=.|. .+-+.||++-|..++..+..+
T Consensus 386 -------------------p~LL~~id~-~~~p~-------------------------~~~~kPl~ltIsdi~~~~~~~ 420 (603)
T KOG0458|consen 386 -------------------PTLLSQIDS-FKIPE-------------------------RPIDKPLRLTISDIYPLPSSG 420 (603)
T ss_pred -------------------ChHHHHHhh-ccCCC-------------------------CcccCCeEEEhhheeecCCCe
Confidence 356666655 33331 012359999999999887766
Q ss_pred cceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEe--ccccccccce-ee
Q 003378 383 RFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TL 459 (824)
Q Consensus 383 ~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~--gl~~~~~~tg-Tl 459 (824)
+..+|||.||.|++||+||++.+. . ...|..|.. ...+...|.|||-|.+. |+....++.| ++
T Consensus 421 -~~i~gkiesG~iq~gqkl~i~~s~-----e----~~~vk~l~~----~~~~~~~a~AGD~Vsl~L~~i~~n~v~~g~i~ 486 (603)
T KOG0458|consen 421 -VSISGKIESGYIQPGQKLYIMTSR-----E----DATVKGLTS----NDEPKTWAVAGDNVSLKLPGILPNLVQVGDIA 486 (603)
T ss_pred -eEEEEEEeccccccCCEEEEecCc-----c----eEEEEeeec----CCCcceeEeeCCEEEEecCccChhhcccceee
Confidence 589999999999999999986421 1 156777654 25678899999998764 6544445667 55
Q ss_pred ec
Q 003378 460 TN 461 (824)
Q Consensus 460 ~~ 461 (824)
++
T Consensus 487 ~~ 488 (603)
T KOG0458|consen 487 DS 488 (603)
T ss_pred ec
Confidence 53
No 56
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.94 E-value=1.3e-26 Score=234.37 Aligned_cols=168 Identities=31% Similarity=0.403 Sum_probs=136.5
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccC--CceeecCChhhHhHhccceeeceEEEE--Eeechhhhhccc
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVA--GDVRMTDTRQDEAERGITIKSTGISLY--YEMTDAALKSYR 82 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~--g~~~~~D~~~~E~~rgiTi~~~~~~~~--~~~~~~~~~~~~ 82 (824)
+.++|++ +||+|||||||+++|++..+.+..... +..+.+|..++|++||+|++++...+. +.
T Consensus 2 ~~~~I~i---~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~---------- 68 (188)
T PF00009_consen 2 NIRNIAI---IGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNEN---------- 68 (188)
T ss_dssp TEEEEEE---EESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTES----------
T ss_pred CEEEEEE---ECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccccccccc----------
Confidence 4689999 999999999999999999998765211 113468999999999999999999888 54
Q ss_pred cccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCC
Q 003378 83 GERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVD 162 (824)
Q Consensus 83 ~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~ 162 (824)
++.++|||||||.+|..++.++++.+|+||+|||+.+|++.||.++|.++...++|+|+|+||||+. ..+
T Consensus 69 ------~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~----~~~ 138 (188)
T PF00009_consen 69 ------NRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLI----EKE 138 (188)
T ss_dssp ------SEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSS----HHH
T ss_pred ------ccceeecccccccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccch----hhh
Confidence 8999999999999999999999999999999999999999999999999999999999999999998 433
Q ss_pred HHHHHHHHHHHHHHhh-hhhhhccCCCCCCceeec-ccceeecccCccceee
Q 003378 163 GEEAYQTFQKVIENAN-VIMATYEDPLLGDVQVYP-EKGTVAFSAGLHGWAF 212 (824)
Q Consensus 163 ~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~p-~~~~v~~~s~~~g~~~ 212 (824)
+++.++++. .++..+.. .+ ...++.+.|++.||++
T Consensus 139 -------~~~~~~~~~~~l~~~~~~--------~~~~~~~vi~~Sa~~g~gi 175 (188)
T PF00009_consen 139 -------LEEIIEEIKEKLLKEYGE--------NGEEIVPVIPISALTGDGI 175 (188)
T ss_dssp -------HHHHHHHHHHHHHHHTTS--------TTTSTEEEEEEBTTTTBTH
T ss_pred -------HHHHHHHHHHHhcccccc--------CccccceEEEEecCCCCCH
Confidence 334444444 22222111 01 1236888999999975
No 57
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.94 E-value=2.4e-25 Score=260.62 Aligned_cols=115 Identities=30% Similarity=0.354 Sum_probs=101.5
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
-|++ +||+|||||||+++| .| ..+|..++|++||+|++.....+... ++
T Consensus 2 ii~~---~GhvdhGKTtLi~aL-----------tg--~~~dr~~eE~~rGiTI~l~~~~~~~~---------------~g 50 (614)
T PRK10512 2 IIAT---AGHVDHGKTTLLQAI-----------TG--VNADRLPEEKKRGMTIDLGYAYWPQP---------------DG 50 (614)
T ss_pred EEEE---ECCCCCCHHHHHHHH-----------hC--CCCccchhcccCCceEEeeeEEEecC---------------CC
Confidence 4667 999999999999999 44 23678889999999999877655443 25
Q ss_pred eeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCce-EEEEeCCCcc
Q 003378 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRC 155 (824)
Q Consensus 90 ~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~-ilviNKiD~~ 155 (824)
..++|||||||.+|..++..++..+|++++|||+.+|+.+||++++..+...++|. |+|+||||+.
T Consensus 51 ~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv 117 (614)
T PRK10512 51 RVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRV 117 (614)
T ss_pred cEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccC
Confidence 67999999999999999999999999999999999999999999999998899986 6899999987
No 58
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.94 E-value=7.4e-25 Score=246.60 Aligned_cols=134 Identities=25% Similarity=0.303 Sum_probs=106.8
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechh--hhhcccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDA--ALKSYRG 83 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~--~~~~~~~ 83 (824)
...++|++ +||+|||||||+++| .| .++|..++|++||+|++.+...+.|..+.. ..+.+..
T Consensus 7 ~~~~ni~v---~Gh~d~GKSTL~~~L-----------~~--~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~ 70 (411)
T PRK04000 7 QPEVNIGM---VGHVDHGKTTLVQAL-----------TG--VWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTT 70 (411)
T ss_pred CCcEEEEE---EccCCCCHHHHHHHh-----------hC--eecccCHhHHhcCcEEEecccccccccccccCccccccc
Confidence 56799999 999999999999999 33 368999999999999998876666531100 0000000
Q ss_pred c--cC------CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCc-chhHHHHHHHHHhCCCc-eEEEEeCCC
Q 003378 84 E--RQ------GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQTETVLRQALGERIR-PVLTVNKMD 153 (824)
Q Consensus 84 ~--~~------~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv-~~~t~~~l~~~~~~~~p-~ilviNKiD 153 (824)
. .+ ...+.++|||||||.+|..++..++..+|++++|||+.+|+ ..++..++..+...+++ +++|+||+|
T Consensus 71 ~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~D 150 (411)
T PRK04000 71 EPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKID 150 (411)
T ss_pred cccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeec
Confidence 0 00 11468999999999999999999999999999999999998 89999999988888875 788999999
Q ss_pred cc
Q 003378 154 RC 155 (824)
Q Consensus 154 ~~ 155 (824)
+.
T Consensus 151 l~ 152 (411)
T PRK04000 151 LV 152 (411)
T ss_pred cc
Confidence 97
No 59
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.94 E-value=5.5e-26 Score=230.11 Aligned_cols=168 Identities=23% Similarity=0.284 Sum_probs=131.2
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
+++|++ +||+|||||||+++|++......+........+|+.++|++||+|++++...+.|+
T Consensus 2 ~~ni~i---iGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~--------------- 63 (195)
T cd01884 2 HVNVGT---IGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETA--------------- 63 (195)
T ss_pred cEEEEE---ECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCC---------------
Confidence 488999 99999999999999998753221110011347999999999999999988887764
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCc-eEEEEeCCCcchhcccCCHHHH
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQVDGEEA 166 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p-~ilviNKiD~~~~~~~~~~~~~ 166 (824)
++.++|||||||.+|..++.++++.+|+|++|||+.+|+..||+++|..+.+.++| +|+|+||||+. . + ++.
T Consensus 64 -~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~----~-~-~~~ 136 (195)
T cd01884 64 -NRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMV----D-D-EEL 136 (195)
T ss_pred -CeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCC----C-c-HHH
Confidence 78999999999999999999999999999999999999999999999999999998 56899999986 3 2 222
Q ss_pred HHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCcccee
Q 003378 167 YQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWA 211 (824)
Q Consensus 167 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~ 211 (824)
++.+.+++...+..+. +.+...++.+.|++.|+.
T Consensus 137 ---~~~~~~~i~~~l~~~g--------~~~~~v~iipiSa~~g~n 170 (195)
T cd01884 137 ---LELVEMEVRELLSKYG--------FDGDNTPIVRGSALKALE 170 (195)
T ss_pred ---HHHHHHHHHHHHHHhc--------ccccCCeEEEeeCccccC
Confidence 2333344555554322 223334677789988764
No 60
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.93 E-value=3e-24 Score=241.93 Aligned_cols=133 Identities=26% Similarity=0.306 Sum_probs=106.0
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechh--hhhcccc-
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDA--ALKSYRG- 83 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~--~~~~~~~- 83 (824)
..++|++ +||+|||||||+++| .| ..+|..++|++||+|++.+...+.|..... ....++.
T Consensus 3 ~~~~i~i---iG~~~~GKSTL~~~L-----------t~--~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 66 (406)
T TIGR03680 3 PEVNIGM---VGHVDHGKTTLTKAL-----------TG--VWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTE 66 (406)
T ss_pred ceEEEEE---EccCCCCHHHHHHHH-----------hC--eecccCHhHHHcCceeEecccccccccccccCcccccccc
Confidence 4689999 999999999999999 33 358899999999999998877665431000 0000000
Q ss_pred -ccCC------CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCc-chhHHHHHHHHHhCCCc-eEEEEeCCCc
Q 003378 84 -ERQG------NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQTETVLRQALGERIR-PVLTVNKMDR 154 (824)
Q Consensus 84 -~~~~------~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv-~~~t~~~l~~~~~~~~p-~ilviNKiD~ 154 (824)
..++ .+..++|||||||.+|..++..++..+|++|+|||+.+|+ ..||.+++..+...+++ +++++||+|+
T Consensus 67 ~~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl 146 (406)
T TIGR03680 67 PVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDL 146 (406)
T ss_pred ccccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEcccc
Confidence 0011 2578999999999999999999999999999999999998 89999999988888775 6789999998
Q ss_pred c
Q 003378 155 C 155 (824)
Q Consensus 155 ~ 155 (824)
.
T Consensus 147 ~ 147 (406)
T TIGR03680 147 V 147 (406)
T ss_pred C
Confidence 7
No 61
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=6.9e-24 Score=217.17 Aligned_cols=334 Identities=21% Similarity=0.256 Sum_probs=216.6
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEee-ch-----hhhh
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEM-TD-----AALK 79 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~-~~-----~~~~ 79 (824)
.-++||++ +||+|||||||+.+| .| .++|.+.+|.+|||||+..++...+.. .+ ....
T Consensus 8 Qp~vNIG~---vGHVdHGKtTlv~Al-----------sG--vwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~ 71 (415)
T COG5257 8 QPEVNIGM---VGHVDHGKTTLTKAL-----------SG--VWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTT 71 (415)
T ss_pred CcceEeee---eeecccchhhheehh-----------hc--eeeechhHHHhcCcEEEeccccCceEeCCCCCCCccccc
Confidence 35789988 999999999999999 67 689999999999999999876544321 00 0111
Q ss_pred ccccccC----CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCC-cchhHHHHHHHHHhCCCc-eEEEEeCCC
Q 003378 80 SYRGERQ----GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-VCVQTETVLRQALGERIR-PVLTVNKMD 153 (824)
Q Consensus 80 ~~~~~~~----~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~g-v~~~t~~~l~~~~~~~~p-~ilviNKiD 153 (824)
+..++.. .--.++.|+|+|||+-++..|.++....|+|+|||+|++- .++||+++|-.+.-.++. +|++-||+|
T Consensus 72 ~~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKID 151 (415)
T COG5257 72 EPKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKID 151 (415)
T ss_pred CCCCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccc
Confidence 1111111 1125789999999999999999999999999999999986 799999999888888887 558999999
Q ss_pred cchhcccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHH
Q 003378 154 RCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMM 233 (824)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~ 233 (824)
++ +.+++.++.+++.+-+.-... ++.+|...|+.+
T Consensus 152 lV------~~E~AlE~y~qIk~FvkGt~A--------------e~aPIIPiSA~~------------------------- 186 (415)
T COG5257 152 LV------SRERALENYEQIKEFVKGTVA--------------ENAPIIPISAQH------------------------- 186 (415)
T ss_pred ee------cHHHHHHHHHHHHHHhccccc--------------CCCceeeehhhh-------------------------
Confidence 98 667777777766543221110 000111111100
Q ss_pred HHhhcCcccCCCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHH
Q 003378 234 ERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRV 313 (824)
Q Consensus 234 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i 313 (824)
+.|
T Consensus 187 ----------------------------------------------------------~~N------------------- 189 (415)
T COG5257 187 ----------------------------------------------------------KAN------------------- 189 (415)
T ss_pred ----------------------------------------------------------ccC-------------------
Confidence 011
Q ss_pred HhhhccchHHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCC--------Ccce
Q 003378 314 MQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDK--------GRFF 385 (824)
Q Consensus 314 ~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~--------g~~l 385 (824)
+..|+++|.+|+|.|. .|.+.|..+||.+-+..... |. +
T Consensus 190 -------IDal~e~i~~~IptP~-------------------------rd~~~~p~m~v~RSFDVNkPGt~~~~L~GG-V 236 (415)
T COG5257 190 -------IDALIEAIEKYIPTPE-------------------------RDLDKPPRMYVARSFDVNKPGTPPEELKGG-V 236 (415)
T ss_pred -------HHHHHHHHHHhCCCCc-------------------------cCCCCCceEEEEeecccCCCCCCHHHccCc-e
Confidence 2678999999999992 25667888898888764433 33 5
Q ss_pred eEEEEEeeeecCCCEEEEcCCCCCCCCccccc-eeeeceEEEEecCceeeeccccCCCEEEE-eccccccccceeeecCC
Q 003378 386 AFGRVFSGKVATGLKVRIMGPNYVPGEKKDLY-VKSVQRTVIWMGKKQETVEDVPCGNTVAM-VGLDQYITKNATLTNEK 463 (824)
Q Consensus 386 ~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~-~~ki~~l~~~~G~~~~~v~~a~AGdIvai-~gl~~~~~~tgTl~~~~ 463 (824)
.=+-+.+|.|+.||++.+-. .....+..... .--.+++..+++ ....+++|.+|-.++| ++|+.+++|..-|...-
T Consensus 237 iGGsl~~G~l~vGDEIEIrP-Gi~v~k~~k~~~~pi~T~i~Sl~a-g~~~~~ea~PGGLvgvGT~lDP~ltKaD~L~G~V 314 (415)
T COG5257 237 IGGSLVQGVLRVGDEIEIRP-GIVVEKGGKTVWEPITTEIVSLQA-GGEDVEEARPGGLVGVGTKLDPTLTKADALVGQV 314 (415)
T ss_pred ecceeeeeeEecCCeEEecC-CeEeecCCceEEEEeeEEEEEEEe-CCeeeeeccCCceEEEecccCcchhhhhhhcccc
Confidence 66788899999999998632 21111110000 011223333333 3467999999999888 47777766544332211
Q ss_pred CCCccccccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCceEEEecCCCcEEEEecchH
Q 003378 464 EVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGEL 528 (824)
Q Consensus 464 ~~~~~~~~~~~~~~~Pv~~~aVep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g~GEl 528 (824)
. - .+=.. |+...++.+|.. -|.++.-.+-.++|+.-.++|.++...|--
T Consensus 315 ~----G-~pG~l-Ppv~~~~~ie~~----------LL~RvvG~~~e~kvepik~~E~Lml~VGta 363 (415)
T COG5257 315 V----G-KPGTL-PPVWTSIRIEYH----------LLERVVGTKEELKVEPIKTNEVLMLNVGTA 363 (415)
T ss_pred c----c-CCCCC-CCceEEEEEEee----------ehhhhhCcccccccccccCCCeEEEEeecc
Confidence 0 0 11111 134444555532 244445555566666557888888777753
No 62
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.92 E-value=2.8e-24 Score=222.94 Aligned_cols=151 Identities=26% Similarity=0.316 Sum_probs=126.0
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccc-------------cCCc----eeecCChhhHhHhccceeeceEE
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE-------------VAGD----VRMTDTRQDEAERGITIKSTGIS 68 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~-------------~~g~----~~~~D~~~~E~~rgiTi~~~~~~ 68 (824)
...++++. .|++|.|||||+.+|||.+..+-.. ..|+ .-.+|-.+.|||.||||+.++..
T Consensus 4 k~lLRfiT---cGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRy 80 (431)
T COG2895 4 KSLLRFIT---CGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRY 80 (431)
T ss_pred ccceeEEE---eccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeee
Confidence 35678888 9999999999999999988765332 1111 12678899999999999999988
Q ss_pred EEEeechhhhhccccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceE-E
Q 003378 69 LYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-L 147 (824)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~i-l 147 (824)
|... ..++.+.|||||+.|..+|..+..-||.||++|||..|+..||+++--.+.-.+++.+ +
T Consensus 81 FsT~----------------KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvv 144 (431)
T COG2895 81 FSTE----------------KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVV 144 (431)
T ss_pred cccc----------------cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEE
Confidence 8765 7899999999999999999999999999999999999999999999999999999866 7
Q ss_pred EEeCCCcchhcccCCHHHHHHHHHHHHHHhhhhhhh
Q 003378 148 TVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMAT 183 (824)
Q Consensus 148 viNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 183 (824)
.+||||++ +++. +.|++|.++...+..+
T Consensus 145 AVNKmDLv----dy~e----~~F~~I~~dy~~fa~~ 172 (431)
T COG2895 145 AVNKMDLV----DYSE----EVFEAIVADYLAFAAQ 172 (431)
T ss_pred EEeeeccc----ccCH----HHHHHHHHHHHHHHHH
Confidence 79999999 8872 3466666666655543
No 63
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.92 E-value=2e-23 Score=243.91 Aligned_cols=115 Identities=33% Similarity=0.384 Sum_probs=104.0
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
+.|++ +||+|||||||+++| .|. .+|..++|++||+|++.....+.+.
T Consensus 1 ~~I~i---iG~~d~GKTTLi~aL-----------tg~--~~d~~~eE~~rGiTid~~~~~~~~~---------------- 48 (581)
T TIGR00475 1 MIIAT---AGHVDHGKTTLLKAL-----------TGI--AADRLPEEKKRGMTIDLGFAYFPLP---------------- 48 (581)
T ss_pred CEEEE---ECCCCCCHHHHHHHH-----------hCc--cCcCChhHhcCCceEEeEEEEEEeC----------------
Confidence 46888 999999999999999 331 2577889999999999988777664
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCc-eEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p-~ilviNKiD~~ 155 (824)
++.++|||||||.+|..++..++..+|++++|||+.+|+.+||.+++..+...++| +|+|+||||+.
T Consensus 49 ~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv 116 (581)
T TIGR00475 49 DYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRV 116 (581)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCC
Confidence 58999999999999999999999999999999999999999999999999889999 89999999997
No 64
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.91 E-value=1.2e-23 Score=217.75 Aligned_cols=170 Identities=26% Similarity=0.329 Sum_probs=132.0
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCccccc----------CCce-----eecCChhhHhHhccceeeceEEEEEeec
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV----------AGDV-----RMTDTRQDEAERGITIKSTGISLYYEMT 74 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~----------~g~~-----~~~D~~~~E~~rgiTi~~~~~~~~~~~~ 74 (824)
+|++ +||+|||||||+++|++.+|.+++.. .|.. +++|+.++|++||+|++++...+.|.
T Consensus 1 nv~i---~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~-- 75 (219)
T cd01883 1 NLVV---IGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETE-- 75 (219)
T ss_pred CEEE---ecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeC--
Confidence 5788 99999999999999999999887632 2332 38999999999999999999999886
Q ss_pred hhhhhccccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCC-------CcchhHHHHHHHHHhCCC-ceE
Q 003378 75 DAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------GVCVQTETVLRQALGERI-RPV 146 (824)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~-------gv~~~t~~~l~~~~~~~~-p~i 146 (824)
+++++|||||||.+|..++..+++.+|++|+|||+.+ ++..++..++..+...++ |+|
T Consensus 76 --------------~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 141 (219)
T cd01883 76 --------------KYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLI 141 (219)
T ss_pred --------------CeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEE
Confidence 8899999999999999999999999999999999998 677899999988877775 566
Q ss_pred EEEeCCCcchhcccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceee
Q 003378 147 LTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAF 212 (824)
Q Consensus 147 lviNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~ 212 (824)
+|+||||+. .++..+ ..+.+++++++..+..+. +.+...++...|++.|.+.
T Consensus 142 ivvNK~Dl~----~~~~~~--~~~~~i~~~l~~~l~~~~--------~~~~~~~ii~iSA~tg~gi 193 (219)
T cd01883 142 VAVNKMDDV----TVNWSE--ERYDEIKKELSPFLKKVG--------YNPKDVPFIPISGLTGDNL 193 (219)
T ss_pred EEEEccccc----cccccH--HHHHHHHHHHHHHHHHcC--------CCcCCceEEEeecCcCCCC
Confidence 799999998 542111 124444455554444321 1111225666788777654
No 65
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=6.1e-23 Score=223.13 Aligned_cols=129 Identities=26% Similarity=0.355 Sum_probs=110.7
Q ss_pred CCceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccc
Q 003378 4 YCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG 83 (824)
Q Consensus 4 ~~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 83 (824)
.++++--|-| +||+|||||||+++|-... +.....| |||.........+.
T Consensus 149 l~~RpPVVTi---MGHVDHGKTTLLD~lRks~--VAA~E~G--------------GITQhIGAF~V~~p----------- 198 (683)
T KOG1145|consen 149 LEPRPPVVTI---MGHVDHGKTTLLDALRKSS--VAAGEAG--------------GITQHIGAFTVTLP----------- 198 (683)
T ss_pred cCCCCCeEEE---eecccCChhhHHHHHhhCc--eehhhcC--------------CccceeceEEEecC-----------
Confidence 3456666778 9999999999999993222 2211244 79999998888775
Q ss_pred ccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCH
Q 003378 84 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDG 163 (824)
Q Consensus 84 ~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~ 163 (824)
++..|+|+|||||.-|.....++..++|.+||||.+.+|+.+||.+.++++...++|+|+.|||+|++ +++|
T Consensus 199 ----~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp----~a~p 270 (683)
T KOG1145|consen 199 ----SGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKP----GANP 270 (683)
T ss_pred ----CCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCC----CCCH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999 9998
Q ss_pred HHHHHHH
Q 003378 164 EEAYQTF 170 (824)
Q Consensus 164 ~~~~~~~ 170 (824)
+.+++++
T Consensus 271 ekv~~eL 277 (683)
T KOG1145|consen 271 EKVKREL 277 (683)
T ss_pred HHHHHHH
Confidence 8876543
No 66
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.90 E-value=2.6e-23 Score=213.60 Aligned_cols=127 Identities=28% Similarity=0.276 Sum_probs=112.7
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCC---------------ceeecCChhhHhHhccceeeceEEEEEeec
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAG---------------DVRMTDTRQDEAERGITIKSTGISLYYEMT 74 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g---------------~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~ 74 (824)
+|++ +||+|||||||+++|++.+|.++....| ..+++|+.++|++||+|++.....+.|.
T Consensus 1 ~i~i---iG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~-- 75 (208)
T cd04166 1 RFLT---CGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP-- 75 (208)
T ss_pred CEEE---EECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC--
Confidence 5788 9999999999999999999988732111 1468999999999999999999888875
Q ss_pred hhhhhccccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCc-eEEEEeCCC
Q 003378 75 DAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMD 153 (824)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p-~ilviNKiD 153 (824)
+..++|||||||.+|..++..+++.+|++|+|+|+.+|+..+++.++..+...++| +|+|+||||
T Consensus 76 --------------~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D 141 (208)
T cd04166 76 --------------KRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMD 141 (208)
T ss_pred --------------CceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchh
Confidence 78999999999999999999999999999999999999999999998888888876 466899999
Q ss_pred cc
Q 003378 154 RC 155 (824)
Q Consensus 154 ~~ 155 (824)
+.
T Consensus 142 ~~ 143 (208)
T cd04166 142 LV 143 (208)
T ss_pred cc
Confidence 98
No 67
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=3.4e-22 Score=215.04 Aligned_cols=114 Identities=35% Similarity=0.383 Sum_probs=104.6
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
.|+. .||+|||||||+.++ .| ..+|..++|++||+|++.+...+... +
T Consensus 2 ii~t---~GhidHgkT~L~~al-----------tg--~~~d~l~EekKRG~TiDlg~~y~~~~----------------d 49 (447)
T COG3276 2 IIGT---AGHIDHGKTTLLKAL-----------TG--GVTDRLPEEKKRGITIDLGFYYRKLE----------------D 49 (447)
T ss_pred eEEE---eeeeeccchhhhhhh-----------cc--cccccchhhhhcCceEeeeeEeccCC----------------C
Confidence 3566 999999999999999 44 46789999999999999988776554 6
Q ss_pred eeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCce-EEEEeCCCcc
Q 003378 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRC 155 (824)
Q Consensus 90 ~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~-ilviNKiD~~ 155 (824)
+.+.|||+|||.||...+..++...|.|+||||+.+|+.+||.+++..+...+++. ++|+||+|+.
T Consensus 50 ~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~ 116 (447)
T COG3276 50 GVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRV 116 (447)
T ss_pred CceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccc
Confidence 69999999999999999999999999999999999999999999999999999997 7999999988
No 68
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.89 E-value=3.7e-22 Score=208.53 Aligned_cols=296 Identities=22% Similarity=0.339 Sum_probs=210.9
Q ss_pred CceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCcee-ecCChhhHhHhccceeeceEEEEEeechh-hhhccc
Q 003378 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVR-MTDTRQDEAERGITIKSTGISLYYEMTDA-ALKSYR 82 (824)
Q Consensus 5 ~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~-~~D~~~~E~~rgiTi~~~~~~~~~~~~~~-~~~~~~ 82 (824)
.+.++.|+. +||+|||||||+.+| .+|..+.. .|.+| ++|..++|.+||.|-+.+..-+.|..... .++|..
T Consensus 114 ~~~hv~Vg~---aGhVdhGKSTlvG~L--vtG~~DDG-~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPl 187 (527)
T COG5258 114 APEHVLVGV---AGHVDHGKSTLVGVL--VTGRLDDG-DGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPL 187 (527)
T ss_pred CCceEEEEE---eccccCCcceEEEEE--EecCCCCC-CcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcc
Confidence 356788988 999999999999999 56655543 34344 89999999999999999988888875443 455543
Q ss_pred cc------cCCCceeEEEEcCCCccchHHHHHHHH--HhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCc
Q 003378 83 GE------RQGNEYLINLIDSPGHVDFSSEVTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDR 154 (824)
Q Consensus 83 ~~------~~~~~~~i~liDTPGh~df~~e~~~~l--~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~ 154 (824)
.+ .+..+..+.|+||-||+.+...+++++ ...|..+|||.|.+|++..|++++..+....+|+|++++|+|+
T Consensus 188 d~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~ 267 (527)
T COG5258 188 DEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDM 267 (527)
T ss_pred cHHHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEeccc
Confidence 32 244567899999999999999999999 5789999999999999999999999999999999999999998
Q ss_pred chhcccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHH
Q 003378 155 CFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMME 234 (824)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~ 234 (824)
. . + ++++.+++++..+|...+ .+|+.-. . .|...+..
T Consensus 268 ~----~---d---dr~~~v~~ei~~~Lk~v~--------------Rip~~vk-----------------~--~~d~v~aa 304 (527)
T COG5258 268 V----P---D---DRFQGVVEEISALLKRVG--------------RIPLIVK-----------------D--TDDVVLAA 304 (527)
T ss_pred C----c---H---HHHHHHHHHHHHHHHHhc--------------ccceeee-----------------c--cchhHHhh
Confidence 7 2 2 246666666666664211 1222100 0 00000000
Q ss_pred HhhcCcccCCCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHH
Q 003378 235 RLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM 314 (824)
Q Consensus 235 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~ 314 (824)
.. . +.+
T Consensus 305 ~a-~------k~~------------------------------------------------------------------- 310 (527)
T COG5258 305 KA-M------KAG------------------------------------------------------------------- 310 (527)
T ss_pred hh-h------hcC-------------------------------------------------------------------
Confidence 00 0 000
Q ss_pred hhhccc---------hHHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcce
Q 003378 315 QTWLPA---------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFF 385 (824)
Q Consensus 315 ~~~~P~---------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l 385 (824)
+..+|+ --.||+-+...||.-. ..++++||.+||.|++.....|. +
T Consensus 311 ~~vvPi~~tSsVTg~GldlL~e~f~~Lp~rr------------------------~~~d~g~flmYId~iYsVtGVGt-V 365 (527)
T COG5258 311 RGVVPIFYTSSVTGEGLDLLDEFFLLLPKRR------------------------RWDDEGPFLMYIDKIYSVTGVGT-V 365 (527)
T ss_pred CceEEEEEEecccCccHHHHHHHHHhCCccc------------------------ccCCCCCeEEEEEeeEEEeeeEE-E
Confidence 001221 1346666666776641 12467899999999999998898 9
Q ss_pred eEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEE--eccccccccce
Q 003378 386 AFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA 457 (824)
Q Consensus 386 ~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai--~gl~~~~~~tg 457 (824)
+.+-|-||.|+.||++++ ||+.+ .++.+.+|++|.+ .+..|++|.||+|+.+ .|++.--..-|
T Consensus 366 vsGsV~~G~l~~gd~vll-GP~~~----G~fr~v~vkSIem----h~~rvdsa~aG~iig~Al~gv~~e~lerG 430 (527)
T COG5258 366 VSGSVKSGILHVGDTVLL-GPFKD----GKFREVVVKSIEM----HHYRVDSAKAGSIIGIALKGVEKEELERG 430 (527)
T ss_pred EeeeEEeeeeccCCEEEE-ccCCC----CcEEEEEEEEEEE----eeEEeccccCCcEEEEEecccCHHHHhcc
Confidence 999999999999999985 55432 2355688888875 4678999999999765 46655222456
No 69
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=2.8e-21 Score=213.41 Aligned_cols=131 Identities=27% Similarity=0.343 Sum_probs=110.7
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.|+--|++ +||+|||||||++.+ +...+....+| |||.......+.+..
T Consensus 3 ~R~PvVti---mGHVDHGKTtLLD~I--R~t~Va~~EaG--------------GITQhIGA~~v~~~~------------ 51 (509)
T COG0532 3 LRPPVVTI---MGHVDHGKTTLLDKI--RKTNVAAGEAG--------------GITQHIGAYQVPLDV------------ 51 (509)
T ss_pred CCCCEEEE---eCcccCCccchhhhH--hcCccccccCC--------------ceeeEeeeEEEEecc------------
Confidence 35556888 999999999999999 33333333355 799999888887741
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCHHH
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 165 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~ 165 (824)
.+...|+|||||||.-|+....++..++|.|+||||+.+|+.+||.+.+.++.+.++|+|+++||||++ .++|+.
T Consensus 52 -~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~----~~np~~ 126 (509)
T COG0532 52 -IKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKP----EANPDK 126 (509)
T ss_pred -CCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCC----CCCHHH
Confidence 124689999999999999999999999999999999999999999999999999999999999999999 999877
Q ss_pred HHHHHHH
Q 003378 166 AYQTFQK 172 (824)
Q Consensus 166 ~~~~~~~ 172 (824)
+..++++
T Consensus 127 v~~el~~ 133 (509)
T COG0532 127 VKQELQE 133 (509)
T ss_pred HHHHHHH
Confidence 6655443
No 70
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.87 E-value=2.9e-20 Score=216.85 Aligned_cols=131 Identities=24% Similarity=0.253 Sum_probs=89.0
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccc-
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE- 84 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~- 84 (824)
.|+-.|++ +||+|||||||+++|......... .| |+|.......+.+.............
T Consensus 4 ~R~p~V~i---~Gh~~~GKTSLl~~l~~~~v~~~~--~g--------------~itq~ig~~~~~~~~~~~~~~~~~~~~ 64 (586)
T PRK04004 4 LRQPIVVV---LGHVDHGKTTLLDKIRGTAVAAKE--AG--------------GITQHIGATEVPIDVIEKIAGPLKKPL 64 (586)
T ss_pred CCCcEEEE---ECCCCCCHHHHHHHHhCcccccCC--CC--------------ceEEeeceeeccccccccccceecccc
Confidence 45667899 999999999999999433211111 22 23322222111111000000000000
Q ss_pred -cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 85 -RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 85 -~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
..-+-..++|||||||.+|...+.++++.+|++++|+|+.+|+..||...+..+...++|+++++||+|+.
T Consensus 65 ~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 65 PIKLKIPGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRI 136 (586)
T ss_pred ccccccCCEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCc
Confidence 00000137999999999999999999999999999999999999999999999999999999999999985
No 71
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=2.8e-21 Score=203.51 Aligned_cols=290 Identities=20% Similarity=0.251 Sum_probs=202.1
Q ss_pred CceeeEEEeecCccCCCCCHHHHHHHHHHHcCCccccc----------CCc-----eeecCChhhHhHhccceeeceEEE
Q 003378 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRQDEAERGITIKSTGISL 69 (824)
Q Consensus 5 ~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~----------~g~-----~~~~D~~~~E~~rgiTi~~~~~~~ 69 (824)
...++++.. +||+|+||||.-..+++..|.++.+. .++ +|+||+.++||++|-|+......|
T Consensus 76 pk~hvn~vf---ighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~F 152 (501)
T KOG0459|consen 76 PKEHVNAVF---IGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYF 152 (501)
T ss_pred CCCCceEEE---EEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEE
Confidence 366789888 99999999999999999999887651 121 568999999999999999999999
Q ss_pred EEeechhhhhccccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCC-------cchhHHHHHHHHHhCC
Q 003378 70 YYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQALGER 142 (824)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~g-------v~~~t~~~l~~~~~~~ 142 (824)
+.. ..+++++|+|||.-|..+++.++..||.+++|+++..| -..||+++..++...+
T Consensus 153 Ete----------------~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~g 216 (501)
T KOG0459|consen 153 ETE----------------NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAG 216 (501)
T ss_pred Eec----------------ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhc
Confidence 876 78999999999999999999999999999999999765 3569999999998888
Q ss_pred Cce-EEEEeCCCcchhcccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHh
Q 003378 143 IRP-VLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMY 221 (824)
Q Consensus 143 ~p~-ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~ 221 (824)
+.. |+++||||-+ -.+++. +++.++.+++..+|...+..+..+..|.|. |++.|-.. +
T Consensus 217 v~~lVv~vNKMddP----tvnWs~--eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~-------sg~tG~~~--k------ 275 (501)
T KOG0459|consen 217 VKHLIVLINKMDDP----TVNWSN--ERYEECKEKLQPFLRKLGFNPKPDKHFVPV-------SGLTGANV--K------ 275 (501)
T ss_pred cceEEEEEEeccCC----ccCcch--hhHHHHHHHHHHHHHHhcccCCCCceeeec-------ccccccch--h------
Confidence 875 5789999987 544432 446666666666654222111122233332 33322100 0
Q ss_pred hhhcCCChHHHHHHhhcCcccCCCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHH
Q 003378 222 ASKFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEE 301 (824)
Q Consensus 222 ~~~~~id~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~e 301 (824)
.. .+ +...|+. .
T Consensus 276 --~~-~~--s~cpwy~--------------g------------------------------------------------- 287 (501)
T KOG0459|consen 276 --DR-TD--SVCPWYK--------------G------------------------------------------------- 287 (501)
T ss_pred --hc-cc--ccCCccc--------------C-------------------------------------------------
Confidence 00 00 0000000 0
Q ss_pred HHHhHHHHHHHHHhhhccchHHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCC
Q 003378 302 KELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDK 381 (824)
Q Consensus 302 l~~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~ 381 (824)
..+|..+.+ +|++ +.+.++|+.+.|..-+. +.
T Consensus 288 --------------------p~fl~~ld~-l~~~-------------------------~R~~~GP~~~pI~~Kyk--dm 319 (501)
T KOG0459|consen 288 --------------------PIFLEYLDE-LPHL-------------------------ERILNGPIRCPVANKYK--DM 319 (501)
T ss_pred --------------------Cccceehhc-cCcc-------------------------cccCCCCEEeehhhhcc--cc
Confidence 001111111 4443 12356888877765443 45
Q ss_pred CcceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEE--eccccccccce-e
Q 003378 382 GRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-T 458 (824)
Q Consensus 382 g~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai--~gl~~~~~~tg-T 458 (824)
|. +.+++|.||++++|+.+.+++.+ . ...|.+||- +-.+++++.+||.+-+ .|++.--+..| .
T Consensus 320 GT-vv~GKvEsGsi~kg~~lvvMPnk-----~----~veV~~I~~----ddvE~~~~~pGenvk~rlkgieeedi~~Gfi 385 (501)
T KOG0459|consen 320 GT-VVGGKVESGSIKKGQQLVVMPNK-----T----NVEVLGIYS----DDVETDRVAPGENVKLRLKGIEEEDISPGFI 385 (501)
T ss_pred ce-EEEEEecccceecCCeEEEccCC-----c----ceEEEEEec----ccceeeeccCCcceEEEecccchhhccCceE
Confidence 66 99999999999999999987532 1 156777763 4678999999999876 47776655678 8
Q ss_pred eecCCC
Q 003378 459 LTNEKE 464 (824)
Q Consensus 459 l~~~~~ 464 (824)
||++.+
T Consensus 386 L~~~~n 391 (501)
T KOG0459|consen 386 LCSPNN 391 (501)
T ss_pred EecCCC
Confidence 888765
No 72
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.84 E-value=7.5e-20 Score=185.93 Aligned_cols=142 Identities=34% Similarity=0.551 Sum_probs=119.4
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
.+|++ +|+.++|||||+++|++..+.+.....-..+.+|+.+.|+.+|+|+......+.+.
T Consensus 3 r~i~i---vG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~---------------- 63 (194)
T cd01891 3 RNIAI---IAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYK---------------- 63 (194)
T ss_pred cEEEE---EecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEEC----------------
Confidence 57888 99999999999999998777665521112367899999999999999988888775
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCHHHHHH
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 168 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~ 168 (824)
++.++|||||||.+|...+..+++.+|++++|+|+.++...++..++..+...++|+++|+||+|+. ....+...+
T Consensus 64 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~----~~~~~~~~~ 139 (194)
T cd01891 64 DTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRP----DARPEEVVD 139 (194)
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCC----CCCHHHHHH
Confidence 7899999999999999999999999999999999999988888888888888899999999999997 655444444
Q ss_pred HHHHH
Q 003378 169 TFQKV 173 (824)
Q Consensus 169 ~~~~~ 173 (824)
.+.+.
T Consensus 140 ~~~~~ 144 (194)
T cd01891 140 EVFDL 144 (194)
T ss_pred HHHHH
Confidence 44333
No 73
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=1.3e-19 Score=186.92 Aligned_cols=130 Identities=24% Similarity=0.306 Sum_probs=107.5
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
..+|+++ +||+|+|||||+.+|.. .|++...|..+.-.+||||.+...-.+.... . ..-..
T Consensus 6 ~n~N~Gi---LGHvDSGKTtLarals~---------~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~----p---arLpq 66 (522)
T KOG0461|consen 6 SNLNLGI---LGHVDSGKTTLARALSE---------LGSTAAFDKHPQSTERGITLDLGFSTMTVLS----P---ARLPQ 66 (522)
T ss_pred ceeeeee---EeeccCchHHHHHHHHh---------hccchhhccCCcccccceeEeecceeeeccc----c---cccCc
Confidence 3467777 99999999999999932 4456678889999999999998876554321 0 01123
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+....++|+|||||.-++..++.+..+.|.+++|||+..|.+.||.+.+-.........|+|+||+|..
T Consensus 67 ~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~l 135 (522)
T KOG0461|consen 67 GEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVL 135 (522)
T ss_pred cccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccc
Confidence 445689999999999999999999999999999999999999999999888877888899999999986
No 74
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.82 E-value=4.1e-18 Score=197.91 Aligned_cols=130 Identities=25% Similarity=0.237 Sum_probs=90.9
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccc--cc
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYR--GE 84 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~--~~ 84 (824)
|+--|++ +||+|||||||+++|....-.... .| |+|.......+.+........... ..
T Consensus 3 r~piV~I---iG~~d~GKTSLln~l~~~~v~~~e--~g--------------giTq~iG~~~v~~~~~~~~~~~~~~~~~ 63 (590)
T TIGR00491 3 RSPIVSV---LGHVDHGKTTLLDKIRGSAVAKRE--AG--------------GITQHIGATEIPMDVIEGICGDLLKKFK 63 (590)
T ss_pred CCCEEEE---ECCCCCCHHHHHHHHhcccccccc--CC--------------ceecccCeeEeeeccccccccccccccc
Confidence 3445788 999999999999999654321111 22 344433333332221000000000 00
Q ss_pred cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
.+.+...++|||||||.+|...+.++++.+|++++|+|+.+|+..||...+..+...++|+|+++||+|+.
T Consensus 64 v~~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~ 134 (590)
T TIGR00491 64 IRLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRI 134 (590)
T ss_pred cccccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 00111248999999999999999999999999999999999999999999999988999999999999986
No 75
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.81 E-value=6.9e-19 Score=175.99 Aligned_cols=131 Identities=39% Similarity=0.588 Sum_probs=113.7
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
+|++ +||+|+|||||+++|+...|.+... .....++|+.+.|+.+|+|.....+.+.|.. .++++
T Consensus 2 ni~~---vG~~~~GKssL~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~-----------~~~~~ 66 (179)
T cd01890 2 NFSI---IAHIDHGKSTLADRLLELTGTVSKR-EMKEQVLDSMDLERERGITIKAQTVRLNYKA-----------KDGQE 66 (179)
T ss_pred cEEE---EeecCCCHHHHHHHHHHHhCCCCcC-CCceEeccCChhHHHCCCeEecceEEEEEec-----------CCCCc
Confidence 6888 9999999999999999988877652 1224688999999999999998887777741 12357
Q ss_pred eeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 90 ~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+.++|||||||.+|...+..+++.+|++|+|+|+.++...++...|..+...++|+++|+||+|+.
T Consensus 67 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 132 (179)
T cd01890 67 YLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLP 132 (179)
T ss_pred EEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCC
Confidence 889999999999999999999999999999999999998899888888778899999999999987
No 76
>PF03764 EFG_IV: Elongation factor G, domain IV; InterPro: IPR005517 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. EF2 has five domains. This entry represents domain IV found in EF2 (or EF-G) of both prokaryotes and eukaryotes. The EF2-GTP-ribosome complex undergoes extensive structural rearrangement for tRNA-mRNA movement to occur. Domain IV, which extends from the 'body' of the EF2 molecule much like a lever arm, appears to be essential for the structural transition to take place. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3J0E_H 1FNM_A 3IZP_E 2OM7_L 1KTV_A 2J7K_A 2BM1_A 2BM0_A 2BV3_A 1ZM3_E ....
Probab=99.81 E-value=8.2e-20 Score=170.63 Aligned_cols=99 Identities=26% Similarity=0.346 Sum_probs=86.9
Q ss_pred hhcCCchhccCeEEEeccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCcceeEEEEeeeeeccccccc
Q 003378 614 EEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHR 693 (824)
Q Consensus 614 ~~~~~~~~~~~~v~~~gp~~~g~n~~~~~~~g~~~~~~~~~~i~~Gf~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~ 693 (824)
.++||+...++.+|.++|...++|+|++.+.+..++++++++|++||++|+++|||+|+||+||+|+|.++.+|. .++
T Consensus 22 ~~~g~~~~~a~v~~~~~P~~~~~~~~~~~~~~~~l~~~~~~ai~~G~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~--~~s 99 (120)
T PF03764_consen 22 RQYGGKRQFAKVILRVEPLEGGGNIFVDETEGGQLPKEFQDAIEEGFQSALSSGPLCGYPVTDVKVTLTDGEYHE--VDS 99 (120)
T ss_dssp EECTSSEEEEEEEEEEEETSTSSEEEEESSSTTSSGGGGHHHHHHHHHHHHCSSTTTSSEB-SEEEEEEEEEC-T--TTB
T ss_pred HHhCCCCceEEEEEEEeecccCCceeeeccccccccHHHHHHHhhhhhheecccccCCCceEEEEEEEEEeeecC--CcC
Confidence 357788888888999999876789999999999999999999999999999999999999999999999999996 344
Q ss_pred CCCChHHHHHHHHHHHHHhcC
Q 003378 694 GGGQVIPTARRVIYASQLTAK 714 (824)
Q Consensus 694 ~~~~~~~a~~~a~~~a~~~a~ 714 (824)
+..+|++|+++||++||++|+
T Consensus 100 ~~~a~~~aa~~a~~~al~~A~ 120 (120)
T PF03764_consen 100 SPGAFRAAARRAFREALKKAG 120 (120)
T ss_dssp SHHHHHHHHHHHHHHHHHHS-
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 456788999999999999985
No 77
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.80 E-value=1.2e-19 Score=185.60 Aligned_cols=131 Identities=25% Similarity=0.231 Sum_probs=103.7
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechh----hhhc----
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDA----ALKS---- 80 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~----~~~~---- 80 (824)
++|++ +||+|||||||+++| .| ..+|+.++|++||+|+..+...+.|..... ....
T Consensus 1 ~~i~~---~g~~~~GKttL~~~l-----------~~--~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (203)
T cd01888 1 INIGT---IGHVAHGKSTLVKAL-----------SG--VWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSK 64 (203)
T ss_pred CEEEE---ECCCCCCHHHHHHHH-----------hC--CCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccc
Confidence 57889 999999999999999 33 347888999999999999998888741100 0000
Q ss_pred ---cccccCC------CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCC-CcchhHHHHHHHHHhCCC-ceEEEE
Q 003378 81 ---YRGERQG------NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-GVCVQTETVLRQALGERI-RPVLTV 149 (824)
Q Consensus 81 ---~~~~~~~------~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~-gv~~~t~~~l~~~~~~~~-p~ilvi 149 (824)
...+.++ ..++++|||||||.+|..++..+++.+|++++|+|+.+ +...++...|..+...++ |+|+|+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivv 144 (203)
T cd01888 65 EDSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQ 144 (203)
T ss_pred cccccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEE
Confidence 0001111 23789999999999999999999999999999999998 477899989888877777 467899
Q ss_pred eCCCcc
Q 003378 150 NKMDRC 155 (824)
Q Consensus 150 NKiD~~ 155 (824)
||+|+.
T Consensus 145 NK~Dl~ 150 (203)
T cd01888 145 NKIDLV 150 (203)
T ss_pred Echhcc
Confidence 999997
No 78
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=99.80 E-value=1.2e-19 Score=153.73 Aligned_cols=73 Identities=41% Similarity=0.674 Sum_probs=68.4
Q ss_pred CCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCceEEEec-CCCcEEEEecchHHHHHHHHHHHhhccCCeEEEEeC
Q 003378 477 VSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSD 551 (824)
Q Consensus 477 ~~Pv~~~aVep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~il~g~GElHLei~~~rL~~~~~~~v~v~~s~ 551 (824)
|+|+++++|+|.++.|+++|.+||++|++|||+|++.++ +|||++|+||||+||||+++||+++| |+++++++
T Consensus 2 p~Pv~~~~i~p~~~~d~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~--~v~v~~~~ 75 (75)
T PF14492_consen 2 PPPVLSVAIEPKNKEDEPKLSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRF--GVEVEFGK 75 (75)
T ss_dssp SS-SEEEEEEESSHHHHHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTT--CEBEEEE-
T ss_pred CCCeEEEEEEECCHhHHHHHHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHH--CCeeEecC
Confidence 499999999999999999999999999999999999997 89999999999999999999999999 99999874
No 79
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.79 E-value=6.1e-19 Score=182.54 Aligned_cols=140 Identities=24% Similarity=0.245 Sum_probs=110.8
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCc-eeecCChhhHhHhccceeeceEEEEEeechhhhhc---c----
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGD-VRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS---Y---- 81 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~-~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~---~---- 81 (824)
+|++ +||.++|||||+.+|.. +..+.. .|. ...+|.+.+|++||+|+..+...+.+......... .
T Consensus 1 ~v~~---~G~~~~GKttl~~~~~~--~~~~~~-~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~ 74 (224)
T cd04165 1 RVAV---VGNVDAGKSTLLGVLTQ--GELDNG-RGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSES 74 (224)
T ss_pred CEEE---ECCCCCCHHHHHHHHHh--CCcCCC-CCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccc
Confidence 4677 99999999999999954 444432 343 35789999999999998777655655432210000 0
Q ss_pred -ccccCCCceeEEEEcCCCccchHHHHHHHHH--hcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 82 -RGERQGNEYLINLIDSPGHVDFSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 82 -~~~~~~~~~~i~liDTPGh~df~~e~~~~l~--~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
......+++.++|||||||.+|..++.+++. .+|++++|||+.+|+..++++++..+...++|+++|+||+|+.
T Consensus 75 ~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~ 151 (224)
T cd04165 75 DIEICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLA 151 (224)
T ss_pred cceeeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECcccc
Confidence 0112345789999999999999999999986 7999999999999999999999999999999999999999986
No 80
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.78 E-value=4.2e-18 Score=172.76 Aligned_cols=133 Identities=25% Similarity=0.305 Sum_probs=108.5
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
++|++ +||+|+|||||+++|+...+ ...+|...+|++||+|++....++.|..... .+......++
T Consensus 1 ~~i~i---~G~~~~GKstLi~~l~~~~~---------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~--~~~~~~~~~~ 66 (192)
T cd01889 1 VNVGV---LGHVDSGKTSLAKALSEIAS---------TAAFDKNPQSQERGITLDLGFSSFYVDKPKH--LRELINPGEE 66 (192)
T ss_pred CeEEE---EecCCCCHHHHHHHHHhccc---------hhhhccCHHHHHcCCeeeecceEEEeccccc--cccccccccc
Confidence 57899 99999999999999965421 3467888999999999999988887752110 0001112345
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
++.++|||||||.+|..++..+++.+|++++|+|+.+|...++...+..+...++|+++|+||+|+.
T Consensus 67 ~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~ 133 (192)
T cd01889 67 NLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLI 133 (192)
T ss_pred CceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 7899999999999999999999999999999999999999999887777777789999999999987
No 81
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.74 E-value=5e-17 Score=163.51 Aligned_cols=127 Identities=40% Similarity=0.561 Sum_probs=109.8
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
+|++ +|..|+|||||+++|+..............+.++....|+.+|+|+......+.+. +
T Consensus 1 ~v~v---~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~ 61 (189)
T cd00881 1 NVGI---AGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP----------------D 61 (189)
T ss_pred CEEE---EeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC----------------C
Confidence 4788 99999999999999988776554432222356788889999999998877777665 6
Q ss_pred eeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 90 ~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
..++||||||+.+|......+++.+|++++|+|+.++...+....+..+...++|+++|+||+|+.
T Consensus 62 ~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~ 127 (189)
T cd00881 62 RRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRV 127 (189)
T ss_pred EEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCc
Confidence 789999999999999999999999999999999999998888888888888899999999999998
No 82
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.72 E-value=5.7e-18 Score=145.61 Aligned_cols=67 Identities=54% Similarity=1.058 Sum_probs=63.1
Q ss_pred cccchheccccccceeeeeeccCCCCceEEEEEechhhhcCchHHHhhhCCCceEeEeEecceeecC
Q 003378 721 ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMS 787 (824)
Q Consensus 721 ~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 787 (824)
++|+|+++|++|||+|++++..+++..+.|+|++|++|||||+++||++|+|+|+|+++|+||++||
T Consensus 14 ~~g~v~~~L~~rrg~i~~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~v~ 80 (80)
T cd04098 14 AVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIESFGFETDLRVHTQGQAFCQSVFDHWQIVP 80 (80)
T ss_pred HHhHHHHHHhhCCcEEeeeeccCCCCcEEEEEECCHHHHhChHHHHHhhCCCceEEEEEeCeeeECc
Confidence 8999999999999999999887664458999999999999999999999999999999999999986
No 83
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.70 E-value=7.3e-17 Score=143.55 Aligned_cols=94 Identities=37% Similarity=0.681 Sum_probs=80.8
Q ss_pred eEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEe
Q 003378 368 LMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 447 (824)
Q Consensus 368 ~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~ 447 (824)
++|+|||+..+++.|.+++|+|||||+|++||.|++++++++.+.+++...++|++|+.++|.+..++++|.|||||++.
T Consensus 1 ~~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~ 80 (94)
T cd04090 1 LVVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80 (94)
T ss_pred CEEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE
Confidence 57999999999987666999999999999999999987654443222344589999999999999999999999999999
Q ss_pred ccccccccceeeec
Q 003378 448 GLDQYITKNATLTN 461 (824)
Q Consensus 448 gl~~~~~~tgTl~~ 461 (824)
|+++.+++++||++
T Consensus 81 gl~~~~~~~~t~~~ 94 (94)
T cd04090 81 GIDSSIVKTATITS 94 (94)
T ss_pred CcchheeceEEecC
Confidence 99999888888864
No 84
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.69 E-value=5.4e-15 Score=179.51 Aligned_cols=116 Identities=23% Similarity=0.218 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccc--cCCCceeEEEEcCCCcc
Q 003378 24 KSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE--RQGNEYLINLIDSPGHV 101 (824)
Q Consensus 24 KTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~liDTPGh~ 101 (824)
||||+++| +++ .+ .++...|||....+..+.+.........+... ..-+...++|||||||.
T Consensus 474 KTtLLD~i-----------R~t-~v----~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe 537 (1049)
T PRK14845 474 NTTLLDKI-----------RKT-RV----AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHE 537 (1049)
T ss_pred cccHHHHH-----------hCC-Cc----ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcH
Confidence 99999999 221 11 23345699999998877764211000000000 00111248999999999
Q ss_pred chHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 102 DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 102 df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+|.....++++.+|++++|+|+.+|+..||..++..+...++|+|+|+||+|+.
T Consensus 538 ~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~ 591 (1049)
T PRK14845 538 AFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLI 591 (1049)
T ss_pred HHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCc
Confidence 999988889999999999999999999999999999999999999999999985
No 85
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.69 E-value=6.7e-17 Score=168.30 Aligned_cols=310 Identities=19% Similarity=0.260 Sum_probs=208.4
Q ss_pred CceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCcee-ecCChhhHhHhccceeeceEEEEEeechhh---hhc
Q 003378 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVR-MTDTRQDEAERGITIKSTGISLYYEMTDAA---LKS 80 (824)
Q Consensus 5 ~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~-~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~---~~~ 80 (824)
++..++|++ +|++|+|||||+.-| ..|.++.. .|..| .+-.+++|.|.|.|.....--+.|....+. ++.
T Consensus 130 DF~E~RVAV---VGNVDAGKSTLLGVL--THgeLDnG-RG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~ 203 (641)
T KOG0463|consen 130 DFIEARVAV---VGNVDAGKSTLLGVL--THGELDNG-RGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDP 203 (641)
T ss_pred cceeEEEEE---EecccCCcceeEeee--eecccccC-ccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCC
Confidence 467789999 999999999999988 55555543 44333 567788999999988877766666543321 111
Q ss_pred c------ccccCCCceeEEEEcCCCccchHHHHHHHHH--hcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCC
Q 003378 81 Y------RGERQGNEYLINLIDSPGHVDFSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKM 152 (824)
Q Consensus 81 ~------~~~~~~~~~~i~liDTPGh~df~~e~~~~l~--~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKi 152 (824)
+ .+..++.-..|+|||.+||+.|.+.+..++. ..|..+++|.+..|+...|++++..++...+|+.+|++||
T Consensus 204 Hg~~LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKI 283 (641)
T KOG0463|consen 204 HGHNLDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKI 283 (641)
T ss_pred CCCcccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEee
Confidence 1 1123445568999999999999999998885 6799999999999999999999999999999999999999
Q ss_pred CcchhcccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeec--ccCccceeeehhhHHHHhhhhcCCChH
Q 003378 153 DRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAF--SAGLHGWAFTLTNFAKMYASKFGVDES 230 (824)
Q Consensus 153 D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~--~s~~~g~~~~~~~fa~~~~~~~~id~~ 230 (824)
|.+ .++ .+++.+..+..++. +|....+|+ .|- |
T Consensus 284 DMC----PAN------iLqEtmKll~rllk------------S~gcrK~PvlVrs~---------------------D-- 318 (641)
T KOG0463|consen 284 DMC----PAN------ILQETMKLLTRLLK------------SPGCRKLPVLVRSM---------------------D-- 318 (641)
T ss_pred ccC----cHH------HHHHHHHHHHHHhc------------CCCcccCcEEEecc---------------------c--
Confidence 998 665 34444444444443 222222222 111 0
Q ss_pred HHHHHhhcCcccCCCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHH
Q 003378 231 KMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALM 310 (824)
Q Consensus 231 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~ 310 (824)
+....+..|....+-||+++.... .+.
T Consensus 319 ------------------------DVv~~A~NF~Ser~CPIFQvSNVt--------------------G~N--------- 345 (641)
T KOG0463|consen 319 ------------------------DVVHAAVNFPSERVCPIFQVSNVT--------------------GTN--------- 345 (641)
T ss_pred ------------------------ceEEeeccCccccccceEEecccc--------------------CCC---------
Confidence 000112334444455555333211 110
Q ss_pred HHHHhhhccchHHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEE
Q 003378 311 KRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRV 390 (824)
Q Consensus 311 ~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV 390 (824)
-+||.+..+.+|.-.. .+.+.|.-.++-.+++.+..|. ++-+..
T Consensus 346 -----------L~LLkmFLNlls~R~~------------------------~~E~~PAeFQIDD~Y~VpGVGT-vvSGT~ 389 (641)
T KOG0463|consen 346 -----------LPLLKMFLNLLSLRRQ------------------------LNENDPAEFQIDDIYWVPGVGT-VVSGTL 389 (641)
T ss_pred -----------hHHHHHHHhhcCcccc------------------------cccCCCcceeecceEecCCcce-Eeecce
Confidence 2466666666655311 1234566677888889999998 999999
Q ss_pred EeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEE--EEeccccccccce-eeecCC
Q 003378 391 FSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTV--AMVGLDQYITKNA-TLTNEK 463 (824)
Q Consensus 391 ~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIv--ai~gl~~~~~~tg-Tl~~~~ 463 (824)
+||+++-+|.+. +||... .++-...|+.|. +++.+|..+.+|+-. |+.+++...++-| .+.+.+
T Consensus 390 L~GtIrLND~Ll-LGPd~~----G~F~pI~iKSIH----RKRMpV~~VrcGQtASFALKKIkr~~vRKGMVmVsp~ 456 (641)
T KOG0463|consen 390 LSGTIRLNDILL-LGPDSN----GDFMPIPIKSIH----RKRMPVGIVRCGQTASFALKKIKRKDVRKGMVMVSPK 456 (641)
T ss_pred eeeeEEeccEEE-ecCCCC----CCeeeeehhhhh----hccccceEEeccchhhhHhhhcchhhhhcceEEecCC
Confidence 999999999886 454422 123345666664 467889999999974 5667776666777 666654
No 86
>cd01684 Tet_like_IV EF-G_domain IV_RPP domain is a part of bacterial ribosomal protected proteins (RPP) family. RPPs such as tetracycline resistance proteins Tet(M) and Tet(O) mediate tetracycline resistance in both gram-positive and -negative species. Tetracyclines inhibit the accommodation of aminoacyl-tRNA into ribosomal A site and therefore prevent the addition of new amino acids to the growing polypeptide. RPPs Tet(M) confer tetracycline resistance by releasing tetracycline from the ribosome and thereby freeing the ribosome from inhibitory effects of the drug, such that aa-tRNA can bind to the A site and protein synthesis can continue.
Probab=99.68 E-value=2e-16 Score=146.04 Aligned_cols=112 Identities=12% Similarity=0.036 Sum_probs=91.6
Q ss_pred EeEEecccccccceeeeecCCC--eeEEEEEEeeCchhhhhhhcCCcCCCCCChhhHHHhhhhhcCCchhccCeEEEecc
Q 003378 554 VSFRETVLEKSCRTVMSKSPNK--HNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGP 631 (824)
Q Consensus 554 V~yrETi~~~~~~~~~~~~~~~--~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gp 631 (824)
|+|||||+.+.+.....+..++ +.+++++++|++.+
T Consensus 1 VaYRETI~~~~~~~~~~~~~~~~~~a~v~l~veP~~~g------------------------------------------ 38 (115)
T cd01684 1 VIYKERPLGTGEGVEHIEVPPNPFWATVGLRVEPLPRG------------------------------------------ 38 (115)
T ss_pred CceEEEeCCcEEEEEEEccCCCcEEEEEEEEEEECCCC------------------------------------------
Confidence 7899999988764333333344 67788888887422
Q ss_pred CCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCcceeEEEEeeeeecc-cccccCCCChHHHHHHHHHHHH
Q 003378 632 ETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQ 710 (824)
Q Consensus 632 ~~~g~n~~~~~~~g~~~~~~~~~~i~~Gf~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~~a~ 710 (824)
.++.|.+.+.|+.++++|.++|++||++|+++||| |+||.||+|+|.++.+|. ||+..++ +.|+++|+++|+
T Consensus 39 ---~g~~f~~~~~~~~ip~~~~~aie~g~~~al~~G~l-G~pv~dv~V~l~~~~~h~~~ss~~af---~~Aa~~a~~~a~ 111 (115)
T cd01684 39 ---SGLQYESEVSLGSLPRSFQNAVEETVRETLQQGLY-GWEVTDCKVTLTYGRYHSPVSTAADF---RELTPRVLRQAL 111 (115)
T ss_pred ---CCcEEEEEecCCcCCHHHHHHHHHHHHHHHhcCCC-CCCEeeEEEEEEEeeecCCCCCHHHH---HHHHHHHHHHHH
Confidence 13667788888889999999999999999999999 999999999999999997 7776664 589999999999
Q ss_pred HhcC
Q 003378 711 LTAK 714 (824)
Q Consensus 711 ~~a~ 714 (824)
.+|+
T Consensus 112 ~~a~ 115 (115)
T cd01684 112 KKAG 115 (115)
T ss_pred HhcC
Confidence 8874
No 87
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.66 E-value=3.1e-16 Score=136.67 Aligned_cols=83 Identities=23% Similarity=0.299 Sum_probs=74.0
Q ss_pred CCCeEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEE
Q 003378 365 EGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTV 444 (824)
Q Consensus 365 ~~p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIv 444 (824)
++||+++|||+.++++.|+ ++|+|||||+|++|+.|++.. +.+ +|+.+||.++|.+..++++|.|||||
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~-la~~RV~sG~l~~g~~v~~~~-----~~~-----~~v~~l~~~~g~~~~~v~~~~aGdI~ 69 (85)
T cd03690 1 ESELSGTVFKIERDDKGER-LAYLRLYSGTLRLRDSVRVNR-----EEK-----IKITELRVFNNGEVVTADTVTAGDIA 69 (85)
T ss_pred CCCcEEEEEEeEECCCCCe-EEEEEEccCEEcCCCEEEeCC-----CcE-----EEeceeEEEeCCCeEECcEECCCCEE
Confidence 3799999999999999887 999999999999999998532 222 79999999999999999999999999
Q ss_pred EEeccccccccce-eee
Q 003378 445 AMVGLDQYITKNA-TLT 460 (824)
Q Consensus 445 ai~gl~~~~~~tg-Tl~ 460 (824)
++.|++++ .+| ||+
T Consensus 70 ai~gl~~~--~~Gdtl~ 84 (85)
T cd03690 70 ILTGLKGL--RVGDVLG 84 (85)
T ss_pred EEECCCCC--cCccccC
Confidence 99999987 678 775
No 88
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.66 E-value=1.1e-15 Score=150.03 Aligned_cols=115 Identities=31% Similarity=0.301 Sum_probs=93.6
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
.|++ +|++++|||||+++|. |. ..+..+.|..+++|+......+.+. .+
T Consensus 2 ~i~i---~G~~~~GKssl~~~l~-----------~~--~~~~~~~~~~~~~t~~~~~~~~~~~---------------~~ 50 (164)
T cd04171 2 IIGT---AGHIDHGKTTLIKALT-----------GI--ETDRLPEEKKRGITIDLGFAYLDLP---------------SG 50 (164)
T ss_pred EEEE---EecCCCCHHHHHHHHh-----------Cc--ccccchhhhccCceEEeeeEEEEec---------------CC
Confidence 5777 9999999999999993 21 1233445667788888776665553 15
Q ss_pred eeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCC-ceEEEEeCCCcc
Q 003378 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI-RPVLTVNKMDRC 155 (824)
Q Consensus 90 ~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~-p~ilviNKiD~~ 155 (824)
+.+++|||||+.+|...+..+++.+|++++|+|+.++...++...+..+...+. |+++++||+|+.
T Consensus 51 ~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 117 (164)
T cd04171 51 KRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLV 117 (164)
T ss_pred cEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECcccc
Confidence 689999999999999999999999999999999999988888887776666666 888999999997
No 89
>cd01680 EFG_like_IV Elongation Factor G-like domain IV. This family includes the translational elongation factor termed EF-2 (for Archaea and Eukarya) and EF-G (for Bacteria), ribosomal protection proteins that mediate tetracycline resistance and, an evolutionarily conserved U5 snRNP-specific protein (U5-116kD). In complex with GTP, EF-G/EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-G/EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Petra, EF-Tu (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-G/EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=99.63 E-value=2.2e-15 Score=139.89 Aligned_cols=112 Identities=22% Similarity=0.240 Sum_probs=90.4
Q ss_pred EEecccccccceeeee----cCCCeeEEEEEEeeCchhhhhhhcCCcCCCCCChhhHHHhhhhhcCCchhccCeEEEecc
Q 003378 556 FRETVLEKSCRTVMSK----SPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGP 631 (824)
Q Consensus 556 yrETi~~~~~~~~~~~----~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gp 631 (824)
|||||.++++...... ...++.+++++++|++.+
T Consensus 1 YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~~~------------------------------------------ 38 (116)
T cd01680 1 YRETIRKSVEATGEFERELGGKPQFGEVTLRVEPLERG------------------------------------------ 38 (116)
T ss_pred CcCccCcceeeeEEEccccCCCCeEEEEEEEEEECCCC------------------------------------------
Confidence 9999998865322221 244567888888887532
Q ss_pred CCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCcceeEEEEeeeeecccccccCCCChHHHHHHHHHHHHH
Q 003378 632 ETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQL 711 (824)
Q Consensus 632 ~~~g~n~~~~~~~g~~~~~~~~~~i~~Gf~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~a~~ 711 (824)
.+|.|++.+.+..++++|+++|++||++|+++|||||+||+|++|+|.++.+|.+ ++...+++.|++.||++||+
T Consensus 39 ---~~~~~~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~--~~~~~~~~~aa~~a~~~al~ 113 (116)
T cd01680 39 ---SGVRVVDPVDEELLPAELKEAVEEGIRDACASGPLTGYPLTDVRVTVLDVPYHEG--VSTEAGFRAAAGRAFESAAQ 113 (116)
T ss_pred ---CCcEEEEecCCCcCCHHHHHHHHHHHHHHHhcCcccCCceeeEEEEEEEEEecCC--CCCHHHHHHHHHHHHHHHHH
Confidence 2477788887888999999999999999999999999999999999999999863 33446788999999999998
Q ss_pred hcC
Q 003378 712 TAK 714 (824)
Q Consensus 712 ~a~ 714 (824)
+|+
T Consensus 114 ~a~ 116 (116)
T cd01680 114 KAG 116 (116)
T ss_pred hcC
Confidence 874
No 90
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=99.62 E-value=3e-16 Score=136.93 Aligned_cols=68 Identities=32% Similarity=0.483 Sum_probs=63.6
Q ss_pred cccchheccccccceeeeeeccCCCCceEEEEEechhhhcCchHHHhhhCCCceEeEeEecceeecCCCC
Q 003378 721 ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDP 790 (824)
Q Consensus 721 ~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~ 790 (824)
++|+|+++|++|||+|.+++..+ +.+.|+|++|++|++||.++||++|+|+|+++++|+||+++|+++
T Consensus 16 ~~g~v~~~l~~rrG~i~~~~~~~--~~~~i~~~iP~~~~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~~~~ 83 (85)
T smart00838 16 YMGDVIGDLNSRRGKIEGMEQRG--GAQVIKAKVPLSEMFGYATDLRSATQGRATWSMEFSHYEEVPKSI 83 (85)
T ss_pred HHHHHHHHHHHcCCEEECeeccC--CcEEEEEECCHHHHhchHHHHHHhcCCeEEEEEEeCcceECChhh
Confidence 99999999999999999988643 478999999999999999999999999999999999999999764
No 91
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=99.61 E-value=2.5e-15 Score=130.61 Aligned_cols=82 Identities=22% Similarity=0.393 Sum_probs=72.6
Q ss_pred eEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEe
Q 003378 368 LMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 447 (824)
Q Consensus 368 ~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~ 447 (824)
|+|+|||+.++++.|. ++|+|||||+|++||.|++... +. .+++++|+.++|.+..++++|.|||||++.
T Consensus 1 ~~a~VfK~~~d~~~g~-i~~~Ri~sGtl~~g~~v~~~~~----~~-----~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~ 70 (83)
T cd04092 1 LCALAFKVVHDPQRGP-LTFVRVYSGTLKRGSALYNTNT----GK-----KERISRLLQPFADQYQEIPSLSAGNIGVIT 70 (83)
T ss_pred CEEEEEecccCCCCCe-EEEEEEecCEECCCCEEEECCC----CC-----EEEeeEEEEEECCCceECCeeCCCCEEEEE
Confidence 5799999999999886 9999999999999999996532 22 279999999999999999999999999999
Q ss_pred ccccccccce-eeec
Q 003378 448 GLDQYITKNA-TLTN 461 (824)
Q Consensus 448 gl~~~~~~tg-Tl~~ 461 (824)
|++++ ++| |||+
T Consensus 71 gl~~~--~~Gdtl~~ 83 (83)
T cd04092 71 GLKQT--RTGDTLVT 83 (83)
T ss_pred CCCCc--ccCCEEeC
Confidence 99886 788 8863
No 92
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=99.60 E-value=4.2e-16 Score=137.17 Aligned_cols=74 Identities=38% Similarity=0.502 Sum_probs=67.8
Q ss_pred ccccc-----------cccchheccccccceeeeeeccCCCCceEEEEEechhhhcCchHHHhhhCCCceEeEeEeccee
Q 003378 716 RLLEP-----------ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWD 784 (824)
Q Consensus 716 ~LlEP-----------~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~ 784 (824)
+|||| ++|+|+++|++|||+|+++... +++++.|+|.+|+++++||.++||++|+|+|+|+++|+||+
T Consensus 1 ~LlEP~~~~~I~~p~~~~g~v~~~l~~r~g~i~~~~~~-~~~~~~i~~~iP~~~~~gf~~~Lr~~T~G~a~~~~~~~~y~ 79 (89)
T PF00679_consen 1 VLLEPIMSVEISVPEEYLGKVISDLSKRRGEILSMDPI-GGDRVVIEAEIPVRELFGFRSELRSLTSGRASFSMEFSGYR 79 (89)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTT-EEEEEEEE-STTEEEEEEEEEGGGHTTHHHHHHHHTTTS-EEEEEEEEEE
T ss_pred CEECCEEEEEEEECHHHHHHHHHHhcccccEEEechhh-hhhheeEEEEEChhhhhhHHHHhhccCCCEEEEEEEECeeE
Confidence 48999 9999999999999999999987 33699999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 003378 785 MMSSDP 790 (824)
Q Consensus 785 ~v~~~~ 790 (824)
++++++
T Consensus 80 ~~~~~~ 85 (89)
T PF00679_consen 80 PVPGDI 85 (89)
T ss_dssp EESHHH
T ss_pred ECCCCh
Confidence 999985
No 93
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.60 E-value=4.5e-15 Score=162.05 Aligned_cols=115 Identities=25% Similarity=0.338 Sum_probs=100.7
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
.+++||| +|.+++|||||+|+|+.....+....+| .|.++-...++|+
T Consensus 177 ~~ikiai---iGrPNvGKSsLiN~ilgeeR~Iv~~~aG---------------TTRD~I~~~~e~~-------------- 224 (444)
T COG1160 177 DPIKIAI---IGRPNVGKSSLINAILGEERVIVSDIAG---------------TTRDSIDIEFERD-------------- 224 (444)
T ss_pred CceEEEE---EeCCCCCchHHHHHhccCceEEecCCCC---------------ccccceeeeEEEC--------------
Confidence 5799999 9999999999999998887777665555 6777777778876
Q ss_pred CCceeEEEEcCCCcc----------chH-HHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHV----------DFS-SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~----------df~-~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+.++.||||+|.. .|. ..+..++..+|.+++|+||.+|+..|..++..++.+.+.++|+|+||||+.
T Consensus 225 --~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~ 302 (444)
T COG1160 225 --GRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLV 302 (444)
T ss_pred --CeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccC
Confidence 8899999999953 233 347788899999999999999999999999999999999999999999987
No 94
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.58 E-value=1.5e-15 Score=130.98 Aligned_cols=67 Identities=64% Similarity=1.178 Sum_probs=63.0
Q ss_pred cccchheccccccceeeeeeccCCCCceEEEEEechhhhcCchHHHhhhCCCceEeEeEecceeecC
Q 003378 721 ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMS 787 (824)
Q Consensus 721 ~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 787 (824)
++|+|+++|++|||.|++++..++++.+.|+|++|++|++||.++||++|+|+|+|+++|+||++||
T Consensus 14 ~~g~V~~~l~~rrg~i~~~~~~~~~~~~~i~~~iP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~ 80 (80)
T cd04096 14 ALGKVYSVLSKRRGHVLSEEPKEGTPLFEIKAYLPVIESFGFETDLRSATSGQAFPQLVFSHWEIVP 80 (80)
T ss_pred HhhHHHHhhhhCeeEEeEEeecCCCccEEEEEEEeHHHHhCcHHHHHhhCCCCcEEEEEeceeEECc
Confidence 8999999999999999999876554568999999999999999999999999999999999999986
No 95
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=99.57 E-value=1.8e-15 Score=129.74 Aligned_cols=65 Identities=22% Similarity=0.462 Sum_probs=61.6
Q ss_pred cccchheccccccceeeeeeccCCCCceEEEEEechhhhcCchHHHhhhCCCceEeEeEecceeecC
Q 003378 721 ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMS 787 (824)
Q Consensus 721 ~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 787 (824)
++|+|+++|++|||+|.+++..+ +.+.|+|++|++|+|||.++||++|+|+|+++++|+||++||
T Consensus 14 ~~g~v~~~l~~rrg~i~~~~~~~--~~~~i~~~~P~~e~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd04097 14 FQGNVIGLLNKRKGTIVDTDTGE--DEFTLEAEVPLNDMFGYSTELRSMTQGKGEFSMEFSRYAPVP 78 (78)
T ss_pred HHHHHHHHHHHCCCEEeceEecC--CeEEEEEEECHHHhhChHHHHHhhCCCcEEEEEEecceEECc
Confidence 89999999999999999998654 478999999999999999999999999999999999999986
No 96
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=99.57 E-value=1.5e-14 Score=128.56 Aligned_cols=91 Identities=51% Similarity=0.935 Sum_probs=74.4
Q ss_pred eEEEEEEeeecC-CCCcceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEE
Q 003378 368 LMLYVSKMIPAS-DKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM 446 (824)
Q Consensus 368 ~va~VfK~~~~~-~~g~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai 446 (824)
++++|||+.+++ ..| +++|+|||||+|++|+.|++.+++++....+...++++++||.++|.+..++++|.|||||+|
T Consensus 1 ~v~~v~Ki~~~~~~~g-~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i 79 (93)
T cd03700 1 LVMYVTKMVPTPDKGG-FIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLI 79 (93)
T ss_pred CeEEEEeCeECCCCCE-EEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEE
Confidence 478999999998 555 499999999999999999987654332112223357999999999999999999999999999
Q ss_pred eccccccccceeeec
Q 003378 447 VGLDQYITKNATLTN 461 (824)
Q Consensus 447 ~gl~~~~~~tgTl~~ 461 (824)
.|++++ ++|++++
T Consensus 80 ~g~~~~--~~g~~~~ 92 (93)
T cd03700 80 VGLDQL--KSGTTAT 92 (93)
T ss_pred ECCccC--ceEeEec
Confidence 999886 6786553
No 97
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=99.57 E-value=9.2e-15 Score=127.18 Aligned_cols=80 Identities=28% Similarity=0.463 Sum_probs=70.9
Q ss_pred EEEEEeee---cCCCCcceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEE
Q 003378 370 LYVSKMIP---ASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM 446 (824)
Q Consensus 370 a~VfK~~~---~~~~g~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai 446 (824)
|+|||+.. +++.|+ ++|+|||||+|++||.|++.. .+.+ +++++|+.++|.+..++++|.||||+++
T Consensus 1 ~~vfKv~~~~~~~~~Gk-la~~Rv~sG~l~~g~~v~~~~----~~~~-----~kv~~l~~~~g~~~~~v~~a~aGdIv~v 70 (85)
T cd03689 1 GFVFKIQANMDPAHRDR-IAFVRVCSGKFERGMKVKHVR----LGKE-----VRLSNPQQFFAQDRETVDEAYPGDIIGL 70 (85)
T ss_pred CEEEEEecccCCCCCcE-EEEEEEECCEEcCCCEEEEcC----CCCE-----EEeeEeEEEecCCeeEcCEECCCCEEEE
Confidence 58999999 898887 999999999999999999632 2322 7999999999999999999999999999
Q ss_pred eccccccccce-eeec
Q 003378 447 VGLDQYITKNA-TLTN 461 (824)
Q Consensus 447 ~gl~~~~~~tg-Tl~~ 461 (824)
.|++++ .+| |||+
T Consensus 71 ~gl~~~--~~Gdtl~~ 84 (85)
T cd03689 71 VNPGNF--QIGDTLTE 84 (85)
T ss_pred ECCCCc--cccCEeeC
Confidence 999987 788 8875
No 98
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.57 E-value=2.9e-14 Score=163.23 Aligned_cols=115 Identities=25% Similarity=0.296 Sum_probs=92.4
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
..++|++ +|++|+|||||+++|+.....+... ..|.|.+.....+.+.
T Consensus 172 ~~~~v~i---vG~~n~GKStlin~ll~~~~~~~~~---------------~~gtt~~~~~~~~~~~-------------- 219 (435)
T PRK00093 172 EPIKIAI---IGRPNVGKSSLINALLGEERVIVSD---------------IAGTTRDSIDTPFERD-------------- 219 (435)
T ss_pred cceEEEE---ECCCCCCHHHHHHHHhCCCceeecC---------------CCCceEEEEEEEEEEC--------------
Confidence 4689999 9999999999999997655433222 2356666655555553
Q ss_pred CCceeEEEEcCCCccch-----------HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDF-----------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df-----------~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+..+++|||||+.+. ...+.++++.+|++|+|+|+.+|...|+..+++++...++|+|+|+||+|+.
T Consensus 220 --~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 220 --GQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLV 297 (435)
T ss_pred --CeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCC
Confidence 678999999997431 1235568899999999999999999999999999999999999999999987
No 99
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1e-14 Score=148.63 Aligned_cols=146 Identities=24% Similarity=0.295 Sum_probs=106.7
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEE-Eeechh---------
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLY-YEMTDA--------- 76 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~-~~~~~~--------- 76 (824)
-||+|+. +||+-|||||++.++ .|- .+-..+.|-||.|||+..++... |+-++.
T Consensus 37 ATiNIGT---IGHVAHGKSTvVkAi-----------SGv--~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~ 100 (466)
T KOG0466|consen 37 ATINIGT---IGHVAHGKSTVVKAI-----------SGV--HTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYR 100 (466)
T ss_pred eeeeecc---eeccccCcceeeeee-----------ccc--eEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhh
Confidence 4677777 999999999999988 552 22234678899999999887654 322221
Q ss_pred -----hhhccccccCCCc------eeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCC-cchhHHHHHHHHHhCCCc
Q 003378 77 -----ALKSYRGERQGNE------YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-VCVQTETVLRQALGERIR 144 (824)
Q Consensus 77 -----~~~~~~~~~~~~~------~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~g-v~~~t~~~l~~~~~~~~p 144 (824)
..+++.+...+-. .++.|+|||||.-++..|..+..+.|+|++++.+.+. .++||.+++....-++++
T Consensus 101 s~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lk 180 (466)
T KOG0466|consen 101 SFGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLK 180 (466)
T ss_pred ccCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhc
Confidence 1122222111111 4678999999999999999999999999999999986 799999999988888887
Q ss_pred eE-EEEeCCCcchhcccCCHHHHHHHHHHHH
Q 003378 145 PV-LTVNKMDRCFLELQVDGEEAYQTFQKVI 174 (824)
Q Consensus 145 ~i-lviNKiD~~~~~~~~~~~~~~~~~~~~~ 174 (824)
.| ++-||+|+. +. +++.++.+++.
T Consensus 181 hiiilQNKiDli----~e--~~A~eq~e~I~ 205 (466)
T KOG0466|consen 181 HIIILQNKIDLI----KE--SQALEQHEQIQ 205 (466)
T ss_pred eEEEEechhhhh----hH--HHHHHHHHHHH
Confidence 55 789999998 33 34444444443
No 100
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=99.56 E-value=1.3e-14 Score=126.18 Aligned_cols=81 Identities=33% Similarity=0.453 Sum_probs=72.1
Q ss_pred eEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEe
Q 003378 368 LMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 447 (824)
Q Consensus 368 ~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~ 447 (824)
++|+|||+.++++.|+ ++|+|||||+|++||.|++++ .+.+ +++.+|+.++|.+..+++++.|||||++.
T Consensus 1 ~~a~Vfk~~~d~~~G~-~~~~Rv~sG~l~~g~~v~~~~----~~~~-----~~v~~l~~~~g~~~~~v~~~~aGdI~~i~ 70 (83)
T cd04088 1 FVALVFKTIHDPFVGK-LSFVRVYSGTLKAGSTLYNST----KGKK-----ERVGRLLRMHGKKQEEVEEAGAGDIGAVA 70 (83)
T ss_pred CEEEEEEcccCCCCce-EEEEEEecCEEcCCCEEEECC----CCcE-----EEeeEEEEEcCCCceECCEeCCCCEEEEE
Confidence 5799999999998887 999999999999999999754 2222 79999999999999999999999999999
Q ss_pred ccccccccce-eee
Q 003378 448 GLDQYITKNA-TLT 460 (824)
Q Consensus 448 gl~~~~~~tg-Tl~ 460 (824)
|+++. ++| ||+
T Consensus 71 g~~~~--~~Gdtl~ 82 (83)
T cd04088 71 GLKDT--ATGDTLC 82 (83)
T ss_pred CCCCC--ccCCEee
Confidence 99986 788 775
No 101
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.56 E-value=4.1e-14 Score=139.63 Aligned_cols=113 Identities=27% Similarity=0.303 Sum_probs=88.2
Q ss_pred EEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCce
Q 003378 11 VCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 90 (824)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (824)
|++ +|+.++|||||+++|....-. . ...+++|.......+.+. .+.++
T Consensus 3 i~i---iG~~~~GKtsli~~l~~~~~~--~--------------~~~~~~t~~~~~~~~~~~-------------~~~~~ 50 (168)
T cd01887 3 VTV---MGHVDHGKTTLLDKIRKTNVA--A--------------GEAGGITQHIGAFEVPAE-------------VLKIP 50 (168)
T ss_pred EEE---EecCCCCHHHHHHHHHhcccc--c--------------ccCCCeEEeeccEEEecc-------------cCCcc
Confidence 778 999999999999999532211 1 012344544443333331 01367
Q ss_pred eEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 91 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 91 ~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
.+++||||||.+|......+++.+|++++|+|+.++...++...+..+...++|+++|+||+|+.
T Consensus 51 ~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 115 (168)
T cd01887 51 GITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKP 115 (168)
T ss_pred eEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecc
Confidence 89999999999998888889999999999999999998899888888888999999999999987
No 102
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=99.56 E-value=1.7e-14 Score=124.67 Aligned_cols=80 Identities=25% Similarity=0.412 Sum_probs=70.0
Q ss_pred eEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEe
Q 003378 368 LMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 447 (824)
Q Consensus 368 ~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~ 447 (824)
|+|+|||+.+++. |+ ++|+|||||+|++||.|++.. .+.+ +++.+|+.++|.+..+++++.||||+++.
T Consensus 1 ~~a~vfK~~~~~~-G~-i~~~Rv~sG~lk~gd~v~~~~----~~~~-----~~v~~i~~~~g~~~~~~~~~~aGdI~~i~ 69 (81)
T cd04091 1 FVGLAFKLEEGRF-GQ-LTYMRIYQGKLKKGDTIYNVR----TGKK-----VRVPRLVRMHSNEMEEVEEAGAGDICAIF 69 (81)
T ss_pred CeEEEEEeecCCC-CC-EEEEEEecCEEcCCCEEEEcC----CCCE-----EEEeEEEEEeCCCceEccEECCCCEEEEE
Confidence 5799999999877 87 999999999999999999643 2322 79999999999999999999999999999
Q ss_pred ccccccccce-eeec
Q 003378 448 GLDQYITKNA-TLTN 461 (824)
Q Consensus 448 gl~~~~~~tg-Tl~~ 461 (824)
|++ . ++| ||++
T Consensus 70 g~~-~--~~Gdtl~~ 81 (81)
T cd04091 70 GID-C--ASGDTFTD 81 (81)
T ss_pred CCC-c--ccCCEecC
Confidence 997 5 688 8863
No 103
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.54 E-value=3.4e-15 Score=128.06 Aligned_cols=65 Identities=20% Similarity=0.237 Sum_probs=61.3
Q ss_pred cccchheccccccceeeeeeccCCCCceEEEEEechhhhcCchHHHhhhCCCceEeEeEecceeecC
Q 003378 721 ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMS 787 (824)
Q Consensus 721 ~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 787 (824)
++|+|+++|++|||+|.+++..+ +.+.|+|++|++|++||.++||++|+|+|+|+++|+||++|+
T Consensus 14 ~~g~v~~~l~~rrg~i~~~~~~~--~~~~i~~~~P~~~~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd03711 14 ALGRAMSDLAKMGATFEDPQIKG--DEVTLEGTIPVATSQDYQSELPSYTHGEGVLETEFKGYRPCH 78 (78)
T ss_pred HHHHHHHHHHHcCCEeeCcEecC--CEEEEEEEECHHHHhhHHHHhHhhcCCeEEEEEEeCCeEECC
Confidence 89999999999999999988654 589999999999999999999999999999999999999984
No 104
>cd01434 EFG_mtEFG1_IV EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provi
Probab=99.54 E-value=3.6e-14 Score=131.59 Aligned_cols=76 Identities=22% Similarity=0.133 Sum_probs=67.9
Q ss_pred CceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCcceeEEEEeeeeecc-cccccCCCChHHHHHHHHHHHHHhcC
Q 003378 636 PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQLTAK 714 (824)
Q Consensus 636 ~n~~~~~~~g~~~~~~~~~~i~~Gf~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~~a~~~a~ 714 (824)
+|.|.+.+.+..+++++.++|++||++|+++||++|+||+||+|+|.++.+|+ |++ ...|+.|+++|+++|+.+|+
T Consensus 40 g~~~~~~~~~~~lp~~~~~ai~~g~~~a~~~Gpl~G~pv~~v~V~l~~~~~~~~~s~---~~~~~~aa~~a~~~al~~a~ 116 (116)
T cd01434 40 GFEFVNKIVGGAIPKEYIPAVEKGFREALEKGPLAGYPVVDVKVTLYDGSYHDVDSS---EMAFKIAARMAFKEAFKKAK 116 (116)
T ss_pred CCEEEEeccCCccCHHHHHHHHHHHHHHHhcCcccCCccccEEEEEEeceeecCCCC---HHHHHHHHHHHHHHHHHhcC
Confidence 46788888888999999999999999999999999999999999999999997 554 34577899999999998874
No 105
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.54 E-value=2.2e-14 Score=164.00 Aligned_cols=116 Identities=26% Similarity=0.270 Sum_probs=91.9
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +|++++|||||+++|+.....+... ..|.|.+.....+.+.
T Consensus 170 ~~~~~v~i---vG~~~~GKSsLin~l~~~~~~~~~~---------------~~gtt~~~~~~~~~~~------------- 218 (429)
T TIGR03594 170 DGPIKIAI---IGRPNVGKSTLVNALLGEERVIVSD---------------IAGTTRDSIDIPFERN------------- 218 (429)
T ss_pred CCceEEEE---ECCCCCCHHHHHHHHHCCCeeecCC---------------CCCceECcEeEEEEEC-------------
Confidence 34589999 9999999999999997554433221 2345666555555554
Q ss_pred CCCceeEEEEcCCCccchH-----------HHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCc
Q 003378 86 QGNEYLINLIDSPGHVDFS-----------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDR 154 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~-----------~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~ 154 (824)
+..+.+|||||+.++. ..+..+++.+|++|+|+|+.+|...++..+++++.+.++|+|+|+||+|+
T Consensus 219 ---~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl 295 (429)
T TIGR03594 219 ---GKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDL 295 (429)
T ss_pred ---CcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECccc
Confidence 5689999999975432 22456789999999999999999999999999999999999999999998
Q ss_pred c
Q 003378 155 C 155 (824)
Q Consensus 155 ~ 155 (824)
.
T Consensus 296 ~ 296 (429)
T TIGR03594 296 V 296 (429)
T ss_pred C
Confidence 6
No 106
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=99.53 E-value=5.5e-15 Score=126.83 Aligned_cols=65 Identities=29% Similarity=0.514 Sum_probs=61.4
Q ss_pred cccchheccccccceeeeeeccCCCCceEEEEEechhhhcCchHHHhhhCCCceEeEeEecceeecC
Q 003378 721 ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMS 787 (824)
Q Consensus 721 ~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 787 (824)
++|+|+++|++|||+|++++..+ +.+.|+|.+|++|++||.++||++|+|+|+++++|+||++||
T Consensus 14 ~~g~v~~~l~~rrg~i~~~~~~~--~~~~i~~~iP~~e~~~~~~~Lr~~T~G~a~~~~~f~~y~~~~ 78 (78)
T cd03713 14 YMGDVIGDLSSRRGQILGTESRG--GWKVIKAEVPLAEMFGYSTDLRSLTQGRGSFTMEFSHYEEVP 78 (78)
T ss_pred HHHHHHHHHHHcCCceEceeccC--CcEEEEEEcCHHHHhChHHHHHhhcCCeEEEEEEecceeECc
Confidence 89999999999999999998653 578999999999999999999999999999999999999986
No 107
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.50 E-value=3.9e-13 Score=132.75 Aligned_cols=114 Identities=26% Similarity=0.342 Sum_probs=84.7
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
+++|++ +|++|+|||||+++|+.....+... .++.|.......+.+.
T Consensus 2 ~~~i~i---~G~~~~GKstli~~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~--------------- 48 (174)
T cd01895 2 PIRIAI---IGRPNVGKSSLVNALLGEERVIVSD---------------IAGTTRDSIDVPFEYD--------------- 48 (174)
T ss_pred CcEEEE---EcCCCCCHHHHHHHHhCccceeccC---------------CCCCccCceeeEEEEC---------------
Confidence 578999 9999999999999996443222111 1233443333333333
Q ss_pred CceeEEEEcCCCccchH-----------HHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFS-----------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~-----------~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+..+++|||||+.++. .....+++.+|++++|+|+..+...+...+++.+...+.|+++++||+|+.
T Consensus 49 -~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 126 (174)
T cd01895 49 -GKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLV 126 (174)
T ss_pred -CeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccC
Confidence 5678999999975441 234456789999999999999988888888888888899999999999987
No 108
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=99.49 E-value=2.3e-14 Score=123.10 Aligned_cols=65 Identities=18% Similarity=0.316 Sum_probs=60.9
Q ss_pred cccchheccccccceeeeeeccCCCCceEEEEEechhhhcCchHHHhhhCCCceEeEeEecceeec
Q 003378 721 ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMM 786 (824)
Q Consensus 721 ~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v 786 (824)
++|+|+++|++|||+|.+++..++ +++.|+|.+|++|++||.++||++|+|+|+|+++|+||++.
T Consensus 14 ~~g~V~~~l~~rrg~i~~~~~~~~-~~~~i~~~~P~~~~~~~~~~Lrs~T~G~a~~~~~f~~y~~~ 78 (79)
T cd03710 14 YSGAVIEKLGKRKGEMVDMEPDGN-GRTRLEFKIPSRGLIGFRSEFLTDTRGTGIMNHVFDGYEPY 78 (79)
T ss_pred hhHHHHHHHHhCCCEEEccEECCC-CEEEEEEEECHHHHcCcHHHHHhhCCCeEEEEEEecccEec
Confidence 999999999999999999987542 57899999999999999999999999999999999999975
No 109
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=99.49 E-value=1.4e-13 Score=120.60 Aligned_cols=84 Identities=25% Similarity=0.442 Sum_probs=72.3
Q ss_pred eEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEe
Q 003378 368 LMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 447 (824)
Q Consensus 368 ~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~ 447 (824)
|.++|||+..+++.|+ ++|+|||||+|++||+|++..++ . +...+++++|+.++|.+..+++++.||||+++.
T Consensus 1 ~~~~vfk~~~d~~~g~-i~~~Rv~sG~l~~g~~v~~~~~~----~--~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~ 73 (86)
T cd03691 1 LQMLVTTLDYDDYVGR-IAIGRIFRGTVKVGQQVAVVKRD----G--KIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIA 73 (86)
T ss_pred CeEEEEEeEecCCCCe-EEEEEEEeCEEcCCCEEEEEcCC----C--CEEEEEEeeEeeeeCCCeeECcEECCCCEEEEE
Confidence 4689999999998887 99999999999999999976432 1 112378999999999999999999999999999
Q ss_pred ccccccccce-eee
Q 003378 448 GLDQYITKNA-TLT 460 (824)
Q Consensus 448 gl~~~~~~tg-Tl~ 460 (824)
|++++ .+| ||+
T Consensus 74 gl~~~--~~Gdtl~ 85 (86)
T cd03691 74 GIEDI--TIGDTIC 85 (86)
T ss_pred CCCCC--cccceec
Confidence 99887 678 775
No 110
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=99.49 E-value=2.3e-14 Score=123.33 Aligned_cols=66 Identities=35% Similarity=0.539 Sum_probs=62.1
Q ss_pred cccchheccccccceeeeeeccCCCCceEEEEEechhhhcCchHHHhhhCCCceEeEeEecceeecC
Q 003378 721 ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMS 787 (824)
Q Consensus 721 ~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 787 (824)
++|+|+++|++|||+|.+++..+ ++++.|+|.+|++|++||.++||++|+|+|+++++|+||+++|
T Consensus 14 ~~g~v~~~l~~rrg~v~~~~~~~-~~~~~i~~~iP~~e~~g~~~~lr~~T~G~~~~~~~f~~y~~~~ 79 (79)
T cd01514 14 YLGAVIGDLSKRRGEILGMEPRG-TGRVVIKAELPLAEMFGFATDLRSLTQGRASFSMEFSHYEPVP 79 (79)
T ss_pred HHHHHHHHHHhcCCeeEeeEecC-CCeEEEEEECCHHHHcCcHHHhhhhcCCeEEEEEEecceEeCc
Confidence 88999999999999999998765 3589999999999999999999999999999999999999985
No 111
>COG1159 Era GTPase [General function prediction only]
Probab=99.48 E-value=4.3e-13 Score=139.30 Aligned_cols=116 Identities=30% Similarity=0.351 Sum_probs=89.6
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.++-.||| +|.+|+|||||+|+|+.+.-.|.......|| -+-+|| ...
T Consensus 4 ~ksGfVaI---iGrPNvGKSTLlN~l~G~KisIvS~k~QTTR-------~~I~GI---------~t~------------- 51 (298)
T COG1159 4 FKSGFVAI---IGRPNVGKSTLLNALVGQKISIVSPKPQTTR-------NRIRGI---------VTT------------- 51 (298)
T ss_pred ceEEEEEE---EcCCCCcHHHHHHHHhcCceEeecCCcchhh-------hheeEE---------EEc-------------
Confidence 46788999 9999999999999997665544433232111 001122 111
Q ss_pred CCCceeEEEEcCCCccc--------hHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVD--------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~d--------f~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
++++|.|+||||... ...++..++..+|.+++|||+.++.....+.++.++...+.|+|+++||+|+.
T Consensus 52 --~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~ 127 (298)
T COG1159 52 --DNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKV 127 (298)
T ss_pred --CCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccC
Confidence 378999999999542 44567888899999999999999999999999999888788999999999987
No 112
>cd01693 mtEFG2_like_IV mtEF-G2 domain IV. This subfamily is a part the of mitochondrial transcriptional elongation factor, mtEF-G2. Mitochondrial translation is crucial for maintaining mitochondrial function and mutations in this system lead to a breakdown in the respiratory chain-oxidative phosphorylation system and to impaired maintenance of mitochondrial DNA. In complex with GTP, EF-G promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome.
Probab=99.47 E-value=2.1e-13 Score=127.25 Aligned_cols=116 Identities=16% Similarity=0.185 Sum_probs=84.2
Q ss_pred EeEEecccccccceee----eecCCCeeEEEEEEeeCchhhhhhhcCCcCCCCCChhhHHHhhhhhcCCchhccCeEEEe
Q 003378 554 VSFRETVLEKSCRTVM----SKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCF 629 (824)
Q Consensus 554 V~yrETi~~~~~~~~~----~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 629 (824)
|+|||||.++++.... ......+.+++++++|++.+. ..+.
T Consensus 1 V~YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~~~~----~~~~------------------------------- 45 (120)
T cd01693 1 IAYRETILEPARATDTLEKVIGDKKHSVTVTMEVRPNQASS----SPVE------------------------------- 45 (120)
T ss_pred CCcccccCCcccCceEEEEeeCCCCeEEEEEEEEEECCCCC----CCCc-------------------------------
Confidence 7899999988652211 223455678999999986430 0000
Q ss_pred ccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCcceeEEEEeeeeecccccccCCCChHHHHHHHHHHH
Q 003378 630 GPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYAS 709 (824)
Q Consensus 630 gp~~~g~n~~~~~~~g~~~~~~~~~~i~~Gf~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~a 709 (824)
...|.+.. +..++++|+++|++|++.|+++|||+|+||+||+|+|.++.+|...+. ..++.|++.|+++|
T Consensus 46 ------~i~~~~~~-~~~~p~~~~~ai~~g~~~al~~Gpl~G~pv~~v~V~l~~~~~~~~~s~---~~~~~Aa~~a~~~a 115 (120)
T cd01693 46 ------LIELANSA-IEVLLKRIQEAVENGVHSALLQGPLLGFPVQDVAITLHSLTIGPGTSP---TMISACASQCVQKA 115 (120)
T ss_pred ------eeEecCcc-CCcChHHHHHHHHHHHHHHHHcCCccCCceeeEEEEEEeCCcCCCCCH---HHHHHHHHHHHHHH
Confidence 01222222 556889999999999999999999999999999999999999963222 22447899999999
Q ss_pred HHhcC
Q 003378 710 QLTAK 714 (824)
Q Consensus 710 ~~~a~ 714 (824)
+.+|+
T Consensus 116 l~~a~ 120 (120)
T cd01693 116 LKSAG 120 (120)
T ss_pred HHhcc
Confidence 98874
No 113
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.47 E-value=2.1e-12 Score=148.89 Aligned_cols=115 Identities=22% Similarity=0.289 Sum_probs=88.0
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
..++|++ +|++++|||||+++|+.....+... ..|+|.+.....+.+.
T Consensus 210 ~~~kI~i---iG~~nvGKSSLin~l~~~~~~~~s~---------------~~gtT~d~~~~~~~~~-------------- 257 (472)
T PRK03003 210 GPRRVAL---VGKPNVGKSSLLNKLAGEERSVVDD---------------VAGTTVDPVDSLIELG-------------- 257 (472)
T ss_pred cceEEEE---ECCCCCCHHHHHHHHhCCCcccccC---------------CCCccCCcceEEEEEC--------------
Confidence 4689999 9999999999999996543322221 1245555444444453
Q ss_pred CCceeEEEEcCCCcc---------chHHH--HHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHV---------DFSSE--VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~---------df~~e--~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+..+.||||||.. +|... ...+++.+|++|+|+|+.++...+...++..+...++|+|+|+||+|+.
T Consensus 258 --~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~ 335 (472)
T PRK03003 258 --GKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLV 335 (472)
T ss_pred --CEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 6788999999952 23222 2356789999999999999999999999999888999999999999997
No 114
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.47 E-value=2.5e-13 Score=132.08 Aligned_cols=108 Identities=25% Similarity=0.234 Sum_probs=81.8
Q ss_pred ccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCceeEEEEc
Q 003378 17 ANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLID 96 (824)
Q Consensus 17 ~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liD 96 (824)
+|+.|+|||||+++|+........ ...++|.........+. ++.+++||
T Consensus 3 ~G~~~~GKssl~~~l~~~~~~~~~---------------~~~~~t~~~~~~~~~~~----------------~~~~~i~D 51 (157)
T cd01894 3 VGRPNVGKSTLFNRLTGRRDAIVE---------------DTPGVTRDRIYGEAEWG----------------GREFILID 51 (157)
T ss_pred cCCCCCCHHHHHHHHhCCcEEeec---------------CCCCceeCceeEEEEEC----------------CeEEEEEE
Confidence 899999999999999533211111 01233433333334443 67899999
Q ss_pred CCCccchHH--------HHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 97 SPGHVDFSS--------EVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 97 TPGh~df~~--------e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
|||+.++.. +....++.+|++++|+|+.++....+..+++.+...++|+++|+||+|+.
T Consensus 52 tpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 118 (157)
T cd01894 52 TGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNI 118 (157)
T ss_pred CCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccC
Confidence 999988543 55677899999999999999888888888888888899999999999998
No 115
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.46 E-value=3.7e-13 Score=132.85 Aligned_cols=115 Identities=17% Similarity=0.118 Sum_probs=80.2
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
+|++ +|+.|+|||||+++|....... .|. . . .+...|+......+.+. +
T Consensus 1 ~i~~---vG~~~~GKstLi~~l~~~~~~~----~~~--~----~--~~~~~t~~~~~~~~~~~----------------~ 49 (167)
T cd04160 1 SVLI---LGLDNAGKTTFLEQLKTLFSKY----KGL--P----P--SKITPTVGLNIGTIEVG----------------N 49 (167)
T ss_pred CEEE---EecCCCCHHHHHHHHhhhcccc----cCC--c----c--cccCCccccceEEEEEC----------------C
Confidence 4777 9999999999999996543210 110 0 0 01223444444455554 7
Q ss_pred eeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcch-hHHHHHHHHH----hCCCceEEEEeCCCcc
Q 003378 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQAL----GERIRPVLTVNKMDRC 155 (824)
Q Consensus 90 ~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~-~t~~~l~~~~----~~~~p~ilviNKiD~~ 155 (824)
..+++||||||.+|.......++.+|++++|+|+.+.-.. .....+..+. ..++|+++++||+|+.
T Consensus 50 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~ 120 (167)
T cd04160 50 ARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLP 120 (167)
T ss_pred EEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccc
Confidence 8999999999999999889999999999999999864222 1222333332 3578999999999987
No 116
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.46 E-value=7.3e-13 Score=127.60 Aligned_cols=132 Identities=20% Similarity=0.249 Sum_probs=101.0
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
....+|++ +|..++||||++.++......+...... .+.... .|..|+....-++...
T Consensus 8 ~~~~KIvv---~G~~~agKtTfv~~~s~k~~v~t~~~~~----~~s~k~--kr~tTva~D~g~~~~~------------- 65 (187)
T COG2229 8 MIETKIVV---IGPVGAGKTTFVRALSDKPLVITEADAS----SVSGKG--KRPTTVAMDFGSIELD------------- 65 (187)
T ss_pred ccceeEEE---EcccccchhhHHHHhhccccceeecccc----cccccc--ccceeEeecccceEEc-------------
Confidence 45678999 9999999999999997766543321010 000000 4456666666666554
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCC-CceEEEEeCCCcchhcccC-CH
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGER-IRPVLTVNKMDRCFLELQV-DG 163 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~-~p~ilviNKiD~~~~~~~~-~~ 163 (824)
.++.++|.|||||.+|.-...-.++.++|+|++||++.+.....+.++......+ +|.++++||.|+. .+ ++
T Consensus 66 --~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~----~a~pp 139 (187)
T COG2229 66 --EDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLF----DALPP 139 (187)
T ss_pred --CcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccC----CCCCH
Confidence 2589999999999999999999999999999999999988887778888887777 8999999999998 76 44
Q ss_pred HH
Q 003378 164 EE 165 (824)
Q Consensus 164 ~~ 165 (824)
++
T Consensus 140 e~ 141 (187)
T COG2229 140 EK 141 (187)
T ss_pred HH
Confidence 44
No 117
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.44 E-value=4e-13 Score=146.93 Aligned_cols=113 Identities=26% Similarity=0.257 Sum_probs=95.0
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
-.|+| +|.+|+|||||.|+|+.+.-.|..... |.|-+-......|.
T Consensus 4 ~~VAI---VGRPNVGKSTLFNRL~g~r~AIV~D~p---------------GvTRDr~y~~~~~~---------------- 49 (444)
T COG1160 4 PVVAI---VGRPNVGKSTLFNRLTGRRIAIVSDTP---------------GVTRDRIYGDAEWL---------------- 49 (444)
T ss_pred CEEEE---ECCCCCcHHHHHHHHhCCeeeEeecCC---------------CCccCCccceeEEc----------------
Confidence 46889 999999999999999655555544333 56777777778887
Q ss_pred ceeEEEEcCCCccc-----hH----HHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVD-----FS----SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~d-----f~----~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
++.+.+|||+|..+ |. ..+..|+..||.+|+|||+.+|++++++.+.+.++..++|+|+|+||+|-.
T Consensus 50 ~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~ 125 (444)
T COG1160 50 GREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNL 125 (444)
T ss_pred CceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCc
Confidence 77899999999874 22 347788899999999999999999999999999998889999999999976
No 118
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.44 E-value=7.1e-14 Score=120.28 Aligned_cols=65 Identities=18% Similarity=0.211 Sum_probs=60.2
Q ss_pred cccchheccccccceeeeeeccCCCCceEEEEEechhhh-cCchHHHhhhCCCceEeEeEecceeec
Q 003378 721 ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVES-FGFSSTLRAATSGQAFPQCVFDHWDMM 786 (824)
Q Consensus 721 ~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~~v 786 (824)
++|+|+++|++|||+|++++..++ +.+.|+|.+|++++ +||.++||++|+|+|+|+++|+||++.
T Consensus 14 ~~G~V~~~l~~rrG~i~~~~~~~~-~~~~i~~~~P~~~~~~g~~~~L~s~T~G~g~~~~~f~~y~~~ 79 (80)
T cd03709 14 YLGAIMELCQERRGVQKDMEYLDA-NRVMLTYELPLAEIVYDFFDKLKSISKGYASLDYELIGYRES 79 (80)
T ss_pred hhHHHHHHHHHhCCEEeccEecCC-CeEEEEEECCHHHHhhhHHHHhHhhcCCEEEEEEEecccccC
Confidence 999999999999999999986542 37899999999999 599999999999999999999999975
No 119
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.43 E-value=4.4e-13 Score=117.25 Aligned_cols=81 Identities=22% Similarity=0.363 Sum_probs=67.4
Q ss_pred eEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEe
Q 003378 368 LMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 447 (824)
Q Consensus 368 ~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~ 447 (824)
|.|+|||+..+++.|+ ++|+|||||+|++||.|++.. .+.+ +++++|+. ++.+..+++++.||||+++.
T Consensus 1 ~~~~Vfk~~~d~~~G~-i~~~Rv~sG~l~~~~~v~~~~----~~~~-----~~i~~l~~-~~~~~~~~~~~~aGdI~~v~ 69 (86)
T cd03699 1 LRALIFDSWYDPYRGV-IALVRVFDGTLKKGDKIRFMS----TGKE-----YEVEEVGI-FRPEMTPTDELSAGQVGYII 69 (86)
T ss_pred CEEEEEEeeccCCCCE-EEEEEEEcCEEcCCCEEEEec----CCCe-----EEEEEEEE-ECCCccCCceECCCCEEEEE
Confidence 5799999999999887 999999999999999999643 2222 79999995 47788999999999999996
Q ss_pred -c---cccccccce-eeec
Q 003378 448 -G---LDQYITKNA-TLTN 461 (824)
Q Consensus 448 -g---l~~~~~~tg-Tl~~ 461 (824)
| ++++ .+| |||+
T Consensus 70 ~g~~~l~~~--~~Gdtl~~ 86 (86)
T cd03699 70 AGIKTVKDA--RVGDTITL 86 (86)
T ss_pred ccccccCcc--ccccEeeC
Confidence 4 5555 678 8863
No 120
>PRK15494 era GTPase Era; Provisional
Probab=99.43 E-value=1.3e-12 Score=143.94 Aligned_cols=116 Identities=22% Similarity=0.273 Sum_probs=83.1
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|++|+|||||+++|+...-.+.....+ .|.......+.+.
T Consensus 50 ~k~~kV~i---vG~~nvGKSTLin~l~~~k~~ivs~k~~---------------tTr~~~~~~~~~~------------- 98 (339)
T PRK15494 50 QKTVSVCI---IGRPNSGKSTLLNRIIGEKLSIVTPKVQ---------------TTRSIITGIITLK------------- 98 (339)
T ss_pred cceeEEEE---EcCCCCCHHHHHHHHhCCceeeccCCCC---------------CccCcEEEEEEeC-------------
Confidence 45679999 9999999999999996432222111111 2222222223333
Q ss_pred CCCceeEEEEcCCCccch--------HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDF--------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df--------~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
++.++||||||..+. ...+..+++.+|++++|+|+.++....+..++..+...+.|+|+|+||+|+.
T Consensus 99 ---~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~ 173 (339)
T PRK15494 99 ---DTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIE 173 (339)
T ss_pred ---CeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCc
Confidence 678999999998542 2334456889999999999999888777777777777888999999999986
No 121
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.42 E-value=1.8e-12 Score=138.68 Aligned_cols=111 Identities=28% Similarity=0.183 Sum_probs=77.3
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
.|++ +|++|+|||||+++|+...-.+.....+ .|... ....... .+
T Consensus 2 ~V~l---iG~pnvGKSTLln~L~~~~~~~vs~~~~---------------TTr~~-i~~i~~~---------------~~ 47 (270)
T TIGR00436 2 FVAI---LGRPNVGKSTLLNQLHGQKISITSPKAQ---------------TTRNR-ISGIHTT---------------GA 47 (270)
T ss_pred EEEE---ECCCCCCHHHHHHHHhCCcEeecCCCCC---------------cccCc-EEEEEEc---------------CC
Confidence 4788 9999999999999996543222111122 12211 1111111 25
Q ss_pred eeEEEEcCCCccch--------HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 90 YLINLIDSPGHVDF--------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 90 ~~i~liDTPGh~df--------~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
.++.|+||||+.+. ...+..+++.+|++++|+|+..+.... ..++..+...+.|.++|+||+|+.
T Consensus 48 ~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 48 SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNK 120 (270)
T ss_pred cEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCC
Confidence 67999999997542 334567889999999999999876554 566777777899999999999986
No 122
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=2.2e-13 Score=152.81 Aligned_cols=131 Identities=23% Similarity=0.310 Sum_probs=93.8
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccc--c
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG--E 84 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~--~ 84 (824)
+..-+|| +||+|.|||-|++.+-..+ .. ...+| |||.......|....-....+.+.. +
T Consensus 474 RSPIcCi---lGHVDTGKTKlld~ir~tN-Vq-egeag--------------gitqqIgAt~fp~~ni~e~tk~~~~~~K 534 (1064)
T KOG1144|consen 474 RSPICCI---LGHVDTGKTKLLDKIRGTN-VQ-EGEAG--------------GITQQIGATYFPAENIREKTKELKKDAK 534 (1064)
T ss_pred CCceEEE---eecccccchHHHHHhhccc-cc-ccccc--------------ceeeeccccccchHHHHHHHHHHHhhhh
Confidence 3445788 9999999999999993321 11 11122 5666555544432210000000100 0
Q ss_pred cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcch
Q 003378 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 156 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~ 156 (824)
..-+--.+.+||||||.-|..-..++...||.||+|||..+|+.+||.+-+..++..+.|+|+++||+||++
T Consensus 535 ~~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLY 606 (1064)
T KOG1144|consen 535 KRLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLY 606 (1064)
T ss_pred hhcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhc
Confidence 011123578999999999999999999999999999999999999999999999999999999999999974
No 123
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.41 E-value=7.3e-12 Score=150.44 Aligned_cols=111 Identities=22% Similarity=0.261 Sum_probs=82.2
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
.++|++ +||+|+|||||.|+|..... + .|+ -.|.|++.....+.+.
T Consensus 3 ~~~IaL---vG~pNvGKSTLfN~Ltg~~~---~--vgn-----------~pGvTve~k~g~~~~~--------------- 48 (772)
T PRK09554 3 KLTIGL---IGNPNSGKTTLFNQLTGARQ---R--VGN-----------WAGVTVERKEGQFSTT--------------- 48 (772)
T ss_pred ceEEEE---ECCCCCCHHHHHHHHhCCCC---c--cCC-----------CCCceEeeEEEEEEcC---------------
Confidence 478999 99999999999999932211 1 221 1467776666666554
Q ss_pred CceeEEEEcCCCccchHH--------HHH--HHH--HhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSS--------EVT--AAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~--------e~~--~~l--~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
++.++++||||+.+|.. |.. ..+ ..+|++++|+|+++... ...++.++.+.++|+++|+||+|+.
T Consensus 49 -~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler--~l~l~~ql~e~giPvIvVlNK~Dl~ 125 (772)
T PRK09554 49 -DHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLER--NLYLTLQLLELGIPCIVALNMLDIA 125 (772)
T ss_pred -ceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchh--hHHHHHHHHHcCCCEEEEEEchhhh
Confidence 78999999999988753 211 122 26899999999988543 3456678888999999999999986
No 124
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=8.8e-13 Score=137.94 Aligned_cols=160 Identities=23% Similarity=0.277 Sum_probs=124.7
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCcee-ecCChhhHhHhccceeeceEEEEEeechhhhhcc---
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVR-MTDTRQDEAERGITIKSTGISLYYEMTDAALKSY--- 81 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~-~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~--- 81 (824)
+..++|++ +|..|+|||||+.-| ..|.++.. .|+.| -+-.+++|.+.|-|...+.-.+.|+.... .-|.
T Consensus 165 fievRvAV---lGg~D~GKSTLlGVL--TQgeLDnG-~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~-vVNY~~~ 237 (591)
T KOG1143|consen 165 FIEVRVAV---LGGCDVGKSTLLGVL--TQGELDNG-NGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGK-VVNYAQN 237 (591)
T ss_pred ceEEEEEE---ecCcccCcceeeeee--ecccccCC-CCeeeeehhcchhhhccCcccccchhccccccccc-ccchhhc
Confidence 45689999 999999999999988 56666654 55555 46778999999998887776666653221 1111
Q ss_pred ---ccccCCCceeEEEEcCCCccchHHHHHHHHH--hcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcch
Q 003378 82 ---RGERQGNEYLINLIDSPGHVDFSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 156 (824)
Q Consensus 82 ---~~~~~~~~~~i~liDTPGh~df~~e~~~~l~--~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~ 156 (824)
+.-.+..+..++|||-+||..|...++.++. ..|.|.+||+|..|+...|++++..+.+.++|..++++|||+.
T Consensus 238 ~taEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~- 316 (591)
T KOG1143|consen 238 MTAEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLV- 316 (591)
T ss_pred ccHHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccc-
Confidence 1124456779999999999999999999996 5689999999999999999999999999999999999999998
Q ss_pred hcccCCHHHHHHHHHHHHHHhhhhhh
Q 003378 157 LELQVDGEEAYQTFQKVIENANVIMA 182 (824)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~l~ 182 (824)
.. +-+++++.++..++.
T Consensus 317 ---~~------~~~~~tv~~l~nll~ 333 (591)
T KOG1143|consen 317 ---DR------QGLKKTVKDLSNLLA 333 (591)
T ss_pred ---cc------hhHHHHHHHHHHHHh
Confidence 32 235556666555553
No 125
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.40 E-value=3.3e-12 Score=128.02 Aligned_cols=114 Identities=17% Similarity=0.168 Sum_probs=80.6
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+..+|++ +|+.|+|||||+++|....... . +.+ ..|.|..... +.+
T Consensus 16 ~~~~~i~i---vG~~~~GKStlin~l~~~~~~~-~-------~~~------~~~~t~~~~~--~~~-------------- 62 (179)
T TIGR03598 16 DDGPEIAF---AGRSNVGKSSLINALTNRKKLA-R-------TSK------TPGRTQLINF--FEV-------------- 62 (179)
T ss_pred CCCCEEEE---EcCCCCCHHHHHHHHhCCCCcc-c-------ccC------CCCcceEEEE--EEe--------------
Confidence 45678999 9999999999999996432110 0 000 1123332221 111
Q ss_pred CCCceeEEEEcCCCcc----------chHHHHHHHHH---hcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCC
Q 003378 86 QGNEYLINLIDSPGHV----------DFSSEVTAALR---ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKM 152 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~----------df~~e~~~~l~---~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKi 152 (824)
+..+.+|||||+. +|...+...++ .+|++++|+|+..+...++..+++.+...++|+++++||+
T Consensus 63 ---~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~ 139 (179)
T TIGR03598 63 ---NDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKA 139 (179)
T ss_pred ---CCcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECc
Confidence 1268999999963 34444444444 4689999999999999999888888888899999999999
Q ss_pred Ccc
Q 003378 153 DRC 155 (824)
Q Consensus 153 D~~ 155 (824)
|+.
T Consensus 140 D~~ 142 (179)
T TIGR03598 140 DKL 142 (179)
T ss_pred ccC
Confidence 987
No 126
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.39 E-value=1.5e-12 Score=149.03 Aligned_cols=112 Identities=24% Similarity=0.247 Sum_probs=90.6
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
+|++ +|++|+|||||+++|+.....+... ..|+|.+.......|. +
T Consensus 1 ~i~i---vG~~nvGKStL~n~l~~~~~~~v~~---------------~~g~t~d~~~~~~~~~----------------~ 46 (429)
T TIGR03594 1 VVAI---VGRPNVGKSTLFNRLTGKRDAIVSD---------------TPGVTRDRKYGDAEWG----------------G 46 (429)
T ss_pred CEEE---ECCCCCCHHHHHHHHhCCCcceecC---------------CCCcccCceEEEEEEC----------------C
Confidence 3788 9999999999999996433322211 1356666666666775 7
Q ss_pred eeEEEEcCCCc--------cchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 90 YLINLIDSPGH--------VDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 90 ~~i~liDTPGh--------~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
..+++|||||+ ..+...+..+++.+|++++|+|+.+|.......+++.+.+.++|+++|+||+|..
T Consensus 47 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~ 120 (429)
T TIGR03594 47 REFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGK 120 (429)
T ss_pred eEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCC
Confidence 78999999997 3455667888999999999999999999999999999988999999999999987
No 127
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.38 E-value=1.8e-12 Score=126.39 Aligned_cols=105 Identities=23% Similarity=0.230 Sum_probs=76.3
Q ss_pred ccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCceeEEEEc
Q 003378 17 ANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLID 96 (824)
Q Consensus 17 ~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liD 96 (824)
+|+.|+|||||++++...... .+ ...|+|+......+.+. +..++|||
T Consensus 2 ~G~~~~GKssl~~~~~~~~~~-----~~-----------~~~~~t~~~~~~~~~~~----------------~~~~~liD 49 (158)
T cd01879 2 VGNPNVGKTTLFNALTGARQK-----VG-----------NWPGVTVEKKEGRFKLG----------------GKEIEIVD 49 (158)
T ss_pred CCCCCCCHHHHHHHHhcCccc-----cc-----------CCCCcccccceEEEeeC----------------CeEEEEEE
Confidence 899999999999999432111 11 12367777666666664 57899999
Q ss_pred CCCccchHHH------HHHHHH--hcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 97 SPGHVDFSSE------VTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 97 TPGh~df~~e------~~~~l~--~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
|||+.+|... ....+. .+|++|+|+|+... .+....+.++.+.++|+++|+||+|+.
T Consensus 50 tpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~ 114 (158)
T cd01879 50 LPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEA 114 (158)
T ss_pred CCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhc
Confidence 9999887642 233443 89999999999863 233345566677899999999999997
No 128
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.37 E-value=2.7e-12 Score=126.53 Aligned_cols=116 Identities=18% Similarity=0.256 Sum_probs=81.1
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
..++|++ +|+.|+|||||+++|+. +..... .. ..++.+.....+.+.
T Consensus 2 ~~~kv~v---vG~~~~GKTsli~~l~~--~~~~~~-~~-------------~t~~~~~~~~~~~~~-------------- 48 (165)
T cd01864 2 FLFKIIL---IGDSNVGKTCVVQRFKS--GTFSER-QG-------------NTIGVDFTMKTLEIE-------------- 48 (165)
T ss_pred ceeEEEE---ECCCCCCHHHHHHHHhh--CCCccc-CC-------------CccceEEEEEEEEEC--------------
Confidence 3589999 99999999999999843 221110 00 111222222333343
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHH---hCCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL---GERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~-~~~---~~~~p~ilviNKiD~~ 155 (824)
+....++||||||+.+|.......++.+|++++|+|+.+....+....|. .+. ..++|+++|+||+|+.
T Consensus 49 ~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 121 (165)
T cd01864 49 GKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLE 121 (165)
T ss_pred CEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 23468899999999999998899999999999999999876555444442 222 2468899999999986
No 129
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.36 E-value=3.6e-12 Score=153.77 Aligned_cols=115 Identities=23% Similarity=0.233 Sum_probs=88.5
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
..++|++ +|++|+|||||+++|+.....+.... .|.|.+.....+.+.
T Consensus 449 ~~~kI~i---vG~~nvGKSSLin~l~~~~~~~v~~~---------------~gtT~d~~~~~~~~~-------------- 496 (712)
T PRK09518 449 GLRRVAL---VGRPNVGKSSLLNQLTHEERAVVNDL---------------AGTTRDPVDEIVEID-------------- 496 (712)
T ss_pred CCcEEEE---ECCCCCCHHHHHHHHhCccccccCCC---------------CCCCcCcceeEEEEC--------------
Confidence 3479999 99999999999999975543222211 234555444445554
Q ss_pred CCceeEEEEcCCCcc---------chHHH--HHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHV---------DFSSE--VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~---------df~~e--~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+..++||||||+. +|... ...+++.+|++|+|+|+.++++.++..++..+...++|+|+|+||+|+.
T Consensus 497 --~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~ 574 (712)
T PRK09518 497 --GEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLM 574 (712)
T ss_pred --CCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcC
Confidence 6678899999963 23322 3456789999999999999999999999999988999999999999997
No 130
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.35 E-value=4.8e-12 Score=145.89 Aligned_cols=114 Identities=22% Similarity=0.301 Sum_probs=88.8
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
..+|+| +|++|+|||||+++|+.....+... ..|+|.+.......|.
T Consensus 38 ~~~V~I---vG~~nvGKSSL~nrl~~~~~~~v~~---------------~~gvT~d~~~~~~~~~--------------- 84 (472)
T PRK03003 38 LPVVAV---VGRPNVGKSTLVNRILGRREAVVED---------------VPGVTRDRVSYDAEWN--------------- 84 (472)
T ss_pred CCEEEE---EcCCCCCHHHHHHHHhCcCcccccC---------------CCCCCEeeEEEEEEEC---------------
Confidence 357999 9999999999999996433222111 2245655544455554
Q ss_pred CceeEEEEcCCCccc--------hHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVD--------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~d--------f~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
++.++||||||+.. |...+..+++.+|++|+|+|+..+.......++..+...++|+|+|+||+|+.
T Consensus 85 -~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~ 159 (472)
T PRK03003 85 -GRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDE 159 (472)
T ss_pred -CcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCC
Confidence 67899999999762 45556778999999999999999988877888888888899999999999987
No 131
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.35 E-value=2e-12 Score=124.83 Aligned_cols=114 Identities=25% Similarity=0.364 Sum_probs=74.2
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
+++|++ +|+.|+|||||+++|+... .... ..++++.......+.+. +
T Consensus 1 ~~ki~~---~G~~~~GKstl~~~l~~~~-~~~~---------------~~~~~~~~~~~~~~~~~--------------~ 47 (161)
T TIGR00231 1 EIKIVI---VGDPNVGKSTLLNRLLGNK-FITE---------------YKPGTTRNYVTTVIEED--------------G 47 (161)
T ss_pred CeEEEE---ECCCCCCHHHHHHHHhCCC-CcCc---------------CCCCceeeeeEEEEEEC--------------C
Confidence 378999 9999999999999995433 1111 11234444333333332 1
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCC-------CCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCI-------EGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~-------~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
..+.+.+||||||.+|........+.++.++.++|.. ++...+...++..+.. +.|+++++||+|+.
T Consensus 48 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~ 121 (161)
T TIGR00231 48 KTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLR 121 (161)
T ss_pred EEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCC
Confidence 2378999999999999666555556566655555554 3333444444454433 88999999999997
No 132
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.35 E-value=1.8e-12 Score=125.30 Aligned_cols=110 Identities=28% Similarity=0.334 Sum_probs=78.6
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
|+|++ +|.+|+|||||.++|....- .+.++ .|.|+......+.+.
T Consensus 1 i~ial---vG~PNvGKStLfN~Ltg~~~----------~v~n~------pG~Tv~~~~g~~~~~---------------- 45 (156)
T PF02421_consen 1 IRIAL---VGNPNVGKSTLFNALTGAKQ----------KVGNW------PGTTVEKKEGIFKLG---------------- 45 (156)
T ss_dssp -EEEE---EESTTSSHHHHHHHHHTTSE----------EEEES------TTSSSEEEEEEEEET----------------
T ss_pred CEEEE---ECCCCCCHHHHHHHHHCCCc----------eecCC------CCCCeeeeeEEEEec----------------
Confidence 68999 99999999999999943321 12222 367888777777765
Q ss_pred ceeEEEEcCCCccchH----HH--HHHHH--HhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFS----SE--VTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~----~e--~~~~l--~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+..+.|+|+||..++. .| +..++ ...|++|+|+||.. ..+...+..++.+.++|+|+++||||..
T Consensus 46 ~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a 118 (156)
T PF02421_consen 46 DQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEA 118 (156)
T ss_dssp TEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHH
T ss_pred CceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHH
Confidence 7899999999954332 12 23333 47899999999986 3455567788889999999999999986
No 133
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.34 E-value=9.8e-12 Score=122.26 Aligned_cols=114 Identities=16% Similarity=0.206 Sum_probs=79.2
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
++|++ +|+.++|||||+++++...- ... ...|+.......... .+++
T Consensus 1 ~ki~v---vG~~~vGKTsli~~~~~~~~--~~~----------------~~~~~~~~~~~~~~~------------~~~~ 47 (161)
T cd04124 1 VKIIL---LGDSAVGKSKLVERFLMDGY--EPQ----------------QLSTYALTLYKHNAK------------FEGK 47 (161)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhCCC--CCC----------------cCCceeeEEEEEEEE------------ECCE
Confidence 47899 99999999999999963221 110 001111111111111 1234
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHh--CCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG--ERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~~--~~~p~ilviNKiD~~ 155 (824)
...+++|||||+..|.......++.+|++|+|+|+.+....+....| ..+.+ .++|+++|+||+|+.
T Consensus 48 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 48 TILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLD 117 (161)
T ss_pred EEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCc
Confidence 67899999999999999999999999999999999887665554444 33333 378999999999985
No 134
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.34 E-value=5.5e-12 Score=122.49 Aligned_cols=111 Identities=23% Similarity=0.268 Sum_probs=79.0
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
++|++ +|++|+|||||+++|.......... ..+.|.......+.+.
T Consensus 2 ~~i~l---~G~~~~GKstli~~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~---------------- 47 (157)
T cd04164 2 IKVVI---VGKPNVGKSSLLNALAGRDRAIVSD---------------IAGTTRDVIEESIDIG---------------- 47 (157)
T ss_pred cEEEE---ECCCCCCHHHHHHHHHCCceEeccC---------------CCCCccceEEEEEEeC----------------
Confidence 47888 9999999999999995433211110 1234444433344443
Q ss_pred ceeEEEEcCCCccchHHH--------HHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e--------~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+..+++|||||+.++... +...++.+|++++|+|+...........+.. ..+.|+++|+||+|+.
T Consensus 48 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~ 120 (157)
T cd04164 48 GIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLL 120 (157)
T ss_pred CEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcC
Confidence 678999999999876432 4456788999999999997665555555544 5678999999999987
No 135
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.34 E-value=5.5e-12 Score=144.49 Aligned_cols=113 Identities=25% Similarity=0.234 Sum_probs=88.1
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
.+|++ +|++|+|||||+++|+.....+... ..|+|.+.......|.
T Consensus 2 ~~I~i---vG~~~vGKStL~n~l~~~~~~~v~~---------------~~~~t~d~~~~~~~~~---------------- 47 (435)
T PRK00093 2 PVVAI---VGRPNVGKSTLFNRLTGKRDAIVAD---------------TPGVTRDRIYGEAEWL---------------- 47 (435)
T ss_pred CEEEE---ECCCCCCHHHHHHHHhCCCceeeCC---------------CCCCcccceEEEEEEC----------------
Confidence 36888 9999999999999995433221111 1245555555555664
Q ss_pred ceeEEEEcCCCccc----h----HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVD----F----SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~d----f----~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+..+++|||||+.+ + ...+..+++.+|++|+|+|+.++.......+.+.+.+.++|+++|+||+|..
T Consensus 48 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~ 122 (435)
T PRK00093 48 GREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGP 122 (435)
T ss_pred CcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCc
Confidence 68899999999988 3 3345678899999999999999998888888888888899999999999976
No 136
>PRK00089 era GTPase Era; Reviewed
Probab=99.32 E-value=2.1e-11 Score=132.06 Aligned_cols=115 Identities=23% Similarity=0.223 Sum_probs=81.5
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
++-.|++ +|++|+|||||+++|+...-.+.....+ .|.. ....+ +.
T Consensus 4 ~~g~V~i---iG~pn~GKSTLin~L~g~~~~~vs~~~~---------------tt~~-~i~~i-~~-------------- 49 (292)
T PRK00089 4 KSGFVAI---VGRPNVGKSTLLNALVGQKISIVSPKPQ---------------TTRH-RIRGI-VT-------------- 49 (292)
T ss_pred eeEEEEE---ECCCCCCHHHHHHHHhCCceeecCCCCC---------------cccc-cEEEE-EE--------------
Confidence 5677899 9999999999999996433221111111 0111 00111 11
Q ss_pred CCceeEEEEcCCCccch--------HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDF--------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df--------~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
..+..+.|+||||+.+. ...+..++..+|++++|+|+..+.......++..+...++|+++|+||+|+.
T Consensus 50 ~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~ 126 (292)
T PRK00089 50 EDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLV 126 (292)
T ss_pred cCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCC
Confidence 12578999999997543 3456677889999999999999777777778777777789999999999986
No 137
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.32 E-value=1.1e-11 Score=121.74 Aligned_cols=113 Identities=19% Similarity=0.230 Sum_probs=77.5
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeec-eEEEEEeechhhhhccccccC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~ 86 (824)
+++|++ +|..++|||||+++++........ .. |+... ...+.+ +
T Consensus 2 ~~ki~i---~G~~~~GKtsl~~~~~~~~~~~~~--~~----------------t~~~~~~~~~~~--------------~ 46 (164)
T cd04145 2 TYKLVV---VGGGGVGKSALTIQFIQSYFVTDY--DP----------------TIEDSYTKQCEI--------------D 46 (164)
T ss_pred ceEEEE---ECCCCCcHHHHHHHHHhCCCCccc--CC----------------CccceEEEEEEE--------------C
Confidence 479999 999999999999999753321110 11 11100 111122 2
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-----HHHHhCCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-----RQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-----~~~~~~~~p~ilviNKiD~~ 155 (824)
+....+++|||||+.+|.......++.+|++++|+|+.+....+...-| +.....++|+++++||+|+.
T Consensus 47 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~ 120 (164)
T cd04145 47 GQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE 120 (164)
T ss_pred CEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccc
Confidence 2356899999999999999999999999999999999875433222222 22223578999999999986
No 138
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.32 E-value=2.3e-11 Score=124.48 Aligned_cols=130 Identities=19% Similarity=0.287 Sum_probs=83.6
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
+|.+ +|+.|+|||||+.+|.... .. +.. .++......+... ...++
T Consensus 2 ~vll---~G~~~sGKTsL~~~l~~~~--~~----~t~-------------~s~~~~~~~~~~~------------~~~~~ 47 (203)
T cd04105 2 TVLL---LGPSDSGKTALFTKLTTGK--YR----STV-------------TSIEPNVATFILN------------SEGKG 47 (203)
T ss_pred eEEE---EcCCCCCHHHHHHHHhcCC--CC----Ccc-------------CcEeecceEEEee------------cCCCC
Confidence 4677 9999999999999995321 11 100 0111111111111 01235
Q ss_pred eeEEEEcCCCccchHHHHHHHHHhc-CEEEEEEeCCCCcc--hhHHHHHHHH----H--hCCCceEEEEeCCCcchhccc
Q 003378 90 YLINLIDSPGHVDFSSEVTAALRIT-DGALVVVDCIEGVC--VQTETVLRQA----L--GERIRPVLTVNKMDRCFLELQ 160 (824)
Q Consensus 90 ~~i~liDTPGh~df~~e~~~~l~~~-D~avlvvd~~~gv~--~~t~~~l~~~----~--~~~~p~ilviNKiD~~~~~~~ 160 (824)
..+.+||||||.+|.......++.+ +++|+|+|+..... ..+...|..+ . ..++|+++|+||+|+. .
T Consensus 48 ~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~----~ 123 (203)
T cd04105 48 KKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLF----T 123 (203)
T ss_pred ceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhc----c
Confidence 7899999999999999999999998 99999999988631 1222222221 1 2478999999999997 5
Q ss_pred C-CHHHHHHHHHHHHHHh
Q 003378 161 V-DGEEAYQTFQKVIENA 177 (824)
Q Consensus 161 ~-~~~~~~~~~~~~~~~~ 177 (824)
+ +.+.+.+.+++-++.+
T Consensus 124 a~~~~~i~~~le~ei~~~ 141 (203)
T cd04105 124 AKPAKKIKEQLEKELNTL 141 (203)
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 5 4445555666555444
No 139
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.30 E-value=1.6e-11 Score=122.23 Aligned_cols=112 Identities=21% Similarity=0.202 Sum_probs=77.7
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +|+.++|||||+++|... .... . ..|+......+.+.
T Consensus 12 ~~~~kv~i---vG~~~~GKTsL~~~l~~~--~~~~----------~-------~~t~g~~~~~~~~~------------- 56 (173)
T cd04154 12 EREMRILI---LGLDNAGKTTILKKLLGE--DIDT----------I-------SPTLGFQIKTLEYE------------- 56 (173)
T ss_pred CCccEEEE---ECCCCCCHHHHHHHHccC--CCCC----------c-------CCccccceEEEEEC-------------
Confidence 45688999 999999999999999532 1100 0 01222122223332
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhH-HHHHHHH----HhCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQA----LGERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t-~~~l~~~----~~~~~p~ilviNKiD~~ 155 (824)
++.+++|||||+..|.......++.+|++++|+|+.+.-.... ...+..+ ...+.|+++|+||+|+.
T Consensus 57 ---~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (173)
T cd04154 57 ---GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLP 128 (173)
T ss_pred ---CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccc
Confidence 6789999999999998888888999999999999987632221 1222222 23578999999999997
No 140
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.30 E-value=2e-11 Score=119.45 Aligned_cols=108 Identities=19% Similarity=0.135 Sum_probs=74.6
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
+|++ +|+.++|||||+.+|.. +.... .. -|+......+.+. +
T Consensus 1 kv~l---vG~~~~GKTsl~~~l~~--~~~~~----------~~-------~t~~~~~~~~~~~----------------~ 42 (158)
T cd04151 1 RILI---LGLDNAGKTTILYRLQL--GEVVT----------TI-------PTIGFNVETVTYK----------------N 42 (158)
T ss_pred CEEE---ECCCCCCHHHHHHHHcc--CCCcC----------cC-------CccCcCeEEEEEC----------------C
Confidence 4778 99999999999999932 11110 00 1222222233332 6
Q ss_pred eeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchh-HHHHHHHH-H---hCCCceEEEEeCCCcc
Q 003378 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQA-L---GERIRPVLTVNKMDRC 155 (824)
Q Consensus 90 ~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~-t~~~l~~~-~---~~~~p~ilviNKiD~~ 155 (824)
..+++|||||+.+|.......++.+|++|+|+|+.+..... ....|... . ..++|+++|+||+|+.
T Consensus 43 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 113 (158)
T cd04151 43 LKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMP 113 (158)
T ss_pred EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCC
Confidence 78999999999999888888999999999999998743222 12223222 2 2478999999999997
No 141
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.30 E-value=1.4e-11 Score=120.82 Aligned_cols=114 Identities=21% Similarity=0.198 Sum_probs=79.5
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
++|++ +|+.++|||||+++|+...-.... . ..++.......+.. ++.
T Consensus 1 ~ki~v---~G~~~vGKTsli~~l~~~~~~~~~--~--------------~~~~~~~~~~~~~~--------------~~~ 47 (161)
T cd04113 1 FKFII---IGSSGTGKSCLLHRFVENKFKEDS--Q--------------HTIGVEFGSKIIRV--------------GGK 47 (161)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhCCCCCCC--C--------------CceeeeEEEEEEEE--------------CCE
Confidence 47889 999999999999999643221110 0 01111111111222 223
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-H---HhCCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-A---LGERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~-~---~~~~~p~ilviNKiD~~ 155 (824)
...++|||||||.+|.......++.+|++++|+|+.++.+.+....|.. + ...++|+++++||+|+.
T Consensus 48 ~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 118 (161)
T cd04113 48 RVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLA 118 (161)
T ss_pred EEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence 5789999999999999888999999999999999998766655444422 2 23578999999999986
No 142
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.30 E-value=1.5e-11 Score=120.24 Aligned_cols=108 Identities=18% Similarity=0.140 Sum_probs=76.6
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
+|++ +|+.|+|||||+++++... ... .-.|+......+.+. .
T Consensus 1 ki~i---iG~~~~GKssli~~~~~~~--~~~-----------------~~~t~~~~~~~~~~~----------------~ 42 (158)
T cd00878 1 RILI---LGLDGAGKTTILYKLKLGE--VVT-----------------TIPTIGFNVETVEYK----------------N 42 (158)
T ss_pred CEEE---EcCCCCCHHHHHHHHhcCC--CCC-----------------CCCCcCcceEEEEEC----------------C
Confidence 4778 9999999999999995433 110 011222223334443 6
Q ss_pred eeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcch-hHHHHHHH----HHhCCCceEEEEeCCCcc
Q 003378 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQ----ALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 90 ~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~-~t~~~l~~----~~~~~~p~ilviNKiD~~ 155 (824)
..+++|||||+..|.......++.+|++++|+|+...-.. .....+.. +...+.|+++|+||+|+.
T Consensus 43 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 113 (158)
T cd00878 43 VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLP 113 (158)
T ss_pred EEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCc
Confidence 7899999999999988888888999999999999976211 22233332 223578999999999997
No 143
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.30 E-value=2.3e-11 Score=120.23 Aligned_cols=111 Identities=21% Similarity=0.143 Sum_probs=71.5
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
+|++ +|+.|+|||||+++|......+.. .. +.|.......+.+. +
T Consensus 2 ~v~i---vG~~~~GKStl~~~l~~~~~~v~~-~~---------------~~t~~~~~~~~~~~----------------~ 46 (170)
T cd01898 2 DVGL---VGLPNAGKSTLLSAISNAKPKIAD-YP---------------FTTLVPNLGVVRVD----------------D 46 (170)
T ss_pred CeEE---ECCCCCCHHHHHHHHhcCCccccC-CC---------------ccccCCcceEEEcC----------------C
Confidence 5788 999999999999999532211110 01 12333322233332 3
Q ss_pred e-eEEEEcCCCccc-------hHHHHHHHHHhcCEEEEEEeCCCC-cchhHHHHH-HHHHh-----CCCceEEEEeCCCc
Q 003378 90 Y-LINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEG-VCVQTETVL-RQALG-----ERIRPVLTVNKMDR 154 (824)
Q Consensus 90 ~-~i~liDTPGh~d-------f~~e~~~~l~~~D~avlvvd~~~g-v~~~t~~~l-~~~~~-----~~~p~ilviNKiD~ 154 (824)
+ .++|+||||+.+ +.....+.++.+|++++|+|+.+. -..+....| +.+.. .++|+++|+||+|+
T Consensus 47 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl 126 (170)
T cd01898 47 GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDL 126 (170)
T ss_pred CCeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhc
Confidence 4 899999999742 344455667789999999999986 333333333 23322 36899999999998
Q ss_pred c
Q 003378 155 C 155 (824)
Q Consensus 155 ~ 155 (824)
.
T Consensus 127 ~ 127 (170)
T cd01898 127 L 127 (170)
T ss_pred C
Confidence 6
No 144
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.30 E-value=1.7e-11 Score=123.28 Aligned_cols=116 Identities=17% Similarity=0.215 Sum_probs=78.6
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
..++|++ +|+.|+|||||++++++.... .. .+ ..|++.. ...+.+. +
T Consensus 2 ~~~kv~~---vG~~~~GKTsli~~~~~~~~~-~~-----------~~---t~~~~~~--~~~~~~~-------------~ 48 (183)
T cd04152 2 QSLHIVM---LGLDSAGKTTVLYRLKFNEFV-NT-----------VP---TKGFNTE--KIKVSLG-------------N 48 (183)
T ss_pred CceEEEE---ECCCCCCHHHHHHHHhcCCcC-Cc-----------CC---cccccee--EEEeecc-------------C
Confidence 4588999 999999999999999643211 00 00 0111111 1122111 2
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-----HHHHHHHhCCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-----TVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-----~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+.+..+++|||||+..|.......++.+|++|+|+|+.+.-..... .++......++|+++|+||+|+.
T Consensus 49 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~ 122 (183)
T cd04152 49 SKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLP 122 (183)
T ss_pred CCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcc
Confidence 2467899999999999988788888999999999999876332222 22233344678999999999986
No 145
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.29 E-value=1.7e-11 Score=121.33 Aligned_cols=115 Identities=20% Similarity=0.159 Sum_probs=79.0
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
+++|++ +|+.|+|||||+++++...-.... .. ..|.+... ..+.+. +
T Consensus 4 ~~ki~v---vG~~~vGKSsLl~~l~~~~~~~~~--~~------------t~~~~~~~--~~~~~~--------------~ 50 (168)
T cd01866 4 LFKYII---IGDTGVGKSCLLLQFTDKRFQPVH--DL------------TIGVEFGA--RMITID--------------G 50 (168)
T ss_pred ceEEEE---ECCCCCCHHHHHHHHHcCCCCCCC--CC------------ccceeEEE--EEEEEC--------------C
Confidence 489999 999999999999999532211110 00 01122211 122222 2
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HHh---CCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG---ERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~-~~~---~~~p~ilviNKiD~~ 155 (824)
....+++|||||+..|.......++.+|++|+|+|+......+....|.. +.+ .++|+++|.||+|+.
T Consensus 51 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 122 (168)
T cd01866 51 KQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE 122 (168)
T ss_pred EEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 35689999999999998888899999999999999987555544444432 222 367899999999986
No 146
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.29 E-value=3.1e-11 Score=118.27 Aligned_cols=110 Identities=16% Similarity=0.178 Sum_probs=75.2
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
+|++ +|..++|||||+.+|......... +. -|+......+.+ .+
T Consensus 1 ~i~~---vG~~~~GKTsl~~~l~~~~~~~~~-------~~----------~t~g~~~~~~~~----------------~~ 44 (162)
T cd04157 1 NILV---VGLDNSGKTTIINQLKPENAQSQI-------IV----------PTVGFNVESFEK----------------GN 44 (162)
T ss_pred CEEE---ECCCCCCHHHHHHHHcccCCCcce-------ec----------CccccceEEEEE----------------CC
Confidence 4677 999999999999999432110000 00 112111122223 27
Q ss_pred eeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhH-HHHHHHHH------hCCCceEEEEeCCCcc
Q 003378 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQAL------GERIRPVLTVNKMDRC 155 (824)
Q Consensus 90 ~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t-~~~l~~~~------~~~~p~ilviNKiD~~ 155 (824)
..+++|||||+.+|.......++.+|++|+|+|+.+...... ...+..+. ..++|+++|+||+|+.
T Consensus 45 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 117 (162)
T cd04157 45 LSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLP 117 (162)
T ss_pred EEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCcccc
Confidence 889999999999999988999999999999999987653321 12222221 2478999999999987
No 147
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.29 E-value=2.3e-11 Score=119.31 Aligned_cols=98 Identities=19% Similarity=0.272 Sum_probs=70.9
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
+|++ +|++|+|||||+++|. |.... + .......|. .
T Consensus 3 ~i~~---iG~~~~GKstl~~~l~-----------~~~~~------------~--~~~~~v~~~----------------~ 38 (158)
T PRK15467 3 RIAF---VGAVGAGKTTLFNALQ-----------GNYTL------------A--RKTQAVEFN----------------D 38 (158)
T ss_pred EEEE---ECCCCCCHHHHHHHHc-----------CCCcc------------C--ccceEEEEC----------------C
Confidence 5888 9999999999999983 21100 0 011223343 1
Q ss_pred eeEEEEcCCCc----cchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 90 YLINLIDSPGH----VDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 90 ~~i~liDTPGh----~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
. ++|||||. .++..++..+++.+|++++|+|+.++....+..++.. ..+.|+++++||+|+.
T Consensus 39 ~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~ 104 (158)
T PRK15467 39 K--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMP 104 (158)
T ss_pred C--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccC
Confidence 1 37999995 5777888888999999999999998876655544432 3467899999999987
No 148
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.28 E-value=2.8e-11 Score=119.64 Aligned_cols=114 Identities=18% Similarity=0.237 Sum_probs=80.4
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhcccee--eceEEEEEeechhhhhccccc
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIK--STGISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~--~~~~~~~~~~~~~~~~~~~~~ 84 (824)
.-.+|++ +|+.|+|||||+++|.. +.... ..+.|+. .....+.+.
T Consensus 6 ~~~~v~v---~G~~~~GKSsli~~l~~--~~~~~----------------~~~~t~~~~~~~~~~~~~------------ 52 (169)
T cd04114 6 FLFKIVL---IGNAGVGKTCLVRRFTQ--GLFPP----------------GQGATIGVDFMIKTVEIK------------ 52 (169)
T ss_pred ceeEEEE---ECCCCCCHHHHHHHHHh--CCCCC----------------CCCCceeeEEEEEEEEEC------------
Confidence 3488999 99999999999999943 22111 0122332 222233332
Q ss_pred cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH----HHHHhCCCceEEEEeCCCcc
Q 003378 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL----RQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l----~~~~~~~~p~ilviNKiD~~ 155 (824)
+....+.++||||+.+|.......++.+|++++|+|..++........| +.....++|+++|+||+|+.
T Consensus 53 --~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~ 125 (169)
T cd04114 53 --GEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLA 125 (169)
T ss_pred --CEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 2346788999999999999999999999999999999877554433344 22234578899999999986
No 149
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.28 E-value=1.8e-11 Score=121.52 Aligned_cols=116 Identities=18% Similarity=0.229 Sum_probs=80.3
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
+.++|++ +|+.|+|||||+++++. +.... +....++.......+.+.
T Consensus 1 r~~ki~v---vG~~~vGKTsli~~~~~--~~~~~--------------~~~~t~~~~~~~~~~~~~-------------- 47 (170)
T cd04115 1 RIFKIIV---IGDSNVGKTCLTYRFCA--GRFPE--------------RTEATIGVDFRERTVEID-------------- 47 (170)
T ss_pred CceEEEE---ECCCCCCHHHHHHHHHh--CCCCC--------------ccccceeEEEEEEEEEEC--------------
Confidence 3578999 99999999999999953 11111 000111122222223332
Q ss_pred CCceeEEEEcCCCccchHH-HHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHHh----CCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSS-EVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~-e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~-~~~~----~~~p~ilviNKiD~~ 155 (824)
+..+.+++|||||+.+|.. .....++.+|++++|+|+.+....+....|. .+.. .++|+++|.||+|+.
T Consensus 48 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 122 (170)
T cd04115 48 GERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122 (170)
T ss_pred CeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 3457899999999999874 4566778999999999999877766666564 3332 358999999999986
No 150
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.28 E-value=1.9e-11 Score=138.87 Aligned_cols=114 Identities=19% Similarity=0.247 Sum_probs=84.5
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
..++|++ +|++|+|||||+++|+.....+..... |.|.+.....+.++
T Consensus 202 ~g~kVvI---vG~~nvGKSSLiN~L~~~~~aivs~~p---------------gtTrd~~~~~i~~~-------------- 249 (442)
T TIGR00450 202 DGFKLAI---VGSPNVGKSSLLNALLKQDRAIVSDIK---------------GTTRDVVEGDFELN-------------- 249 (442)
T ss_pred cCCEEEE---ECCCCCcHHHHHHHHhCCCCcccCCCC---------------CcEEEEEEEEEEEC--------------
Confidence 4579999 999999999999999765443332222 34444444445554
Q ss_pred CCceeEEEEcCCCccchHHH--------HHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e--------~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
++.+++|||||+.++... ...+++.+|++|+|+|+..+...... .+..+...++|+|+|+||+|+.
T Consensus 250 --g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~ 323 (442)
T TIGR00450 250 --GILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLK 323 (442)
T ss_pred --CEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCC
Confidence 778999999998665432 34577889999999999987765554 5566666788999999999997
No 151
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.28 E-value=3.5e-11 Score=120.02 Aligned_cols=111 Identities=19% Similarity=0.209 Sum_probs=78.5
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
+..+|++ +|+.++|||||+.+|.. +.... ...|+......+.+.
T Consensus 14 ~~~kv~~---~G~~~~GKTsl~~~l~~--~~~~~-----------------~~~t~~~~~~~~~~~-------------- 57 (174)
T cd04153 14 KEYKVII---VGLDNAGKTTILYQFLL--GEVVH-----------------TSPTIGSNVEEIVYK-------------- 57 (174)
T ss_pred CccEEEE---ECCCCCCHHHHHHHHcc--CCCCC-----------------cCCccccceEEEEEC--------------
Confidence 4578999 99999999999999943 21110 012333333344443
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhH--HHHHHHHHh---CCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT--ETVLRQALG---ERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t--~~~l~~~~~---~~~p~ilviNKiD~~ 155 (824)
+..+.++||||+..|.......++.+|++|+|+|+++...... ..+.+.+.. .++|+++++||+|+.
T Consensus 58 --~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~ 129 (174)
T cd04153 58 --NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLK 129 (174)
T ss_pred --CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCC
Confidence 6789999999999998888899999999999999987633221 122222222 358999999999987
No 152
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.28 E-value=2e-11 Score=119.75 Aligned_cols=116 Identities=16% Similarity=0.266 Sum_probs=78.8
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
++|++ +|..++|||||+++|.... .... + ...+..+.....+.+. ..+.
T Consensus 1 ~kv~~---vG~~~~GKTsl~~~~~~~~--~~~~---------~-----~~t~~~~~~~~~~~~~------------~~~~ 49 (162)
T cd04106 1 IKVIV---VGNGNVGKSSMIQRFVKGI--FTKD---------Y-----KKTIGVDFLEKQIFLR------------QSDE 49 (162)
T ss_pred CEEEE---ECCCCCCHHHHHHHHhcCC--CCCC---------C-----CCcEEEEEEEEEEEEc------------CCCC
Confidence 47889 9999999999999995321 1100 0 0011111111122221 1134
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHH---hCCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL---GERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~---~~~~p~ilviNKiD~~ 155 (824)
...++||||||+.+|.......++.+|++++|+|+.+........-|.... ..++|+++|+||+|+.
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~ 119 (162)
T cd04106 50 DVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLL 119 (162)
T ss_pred EEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcc
Confidence 678999999999999988899999999999999998765544444443322 2478999999999986
No 153
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.27 E-value=2.3e-11 Score=146.86 Aligned_cols=113 Identities=23% Similarity=0.315 Sum_probs=89.7
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
.+|+| +|++|+|||||+++|+.....+... .-|+|.+.......|.
T Consensus 276 ~~V~I---vG~~nvGKSSL~n~l~~~~~~iv~~---------------~pGvT~d~~~~~~~~~---------------- 321 (712)
T PRK09518 276 GVVAI---VGRPNVGKSTLVNRILGRREAVVED---------------TPGVTRDRVSYDAEWA---------------- 321 (712)
T ss_pred cEEEE---ECCCCCCHHHHHHHHhCCCceeecC---------------CCCeeEEEEEEEEEEC----------------
Confidence 57999 9999999999999996433222221 1245555444445554
Q ss_pred ceeEEEEcCCCccc--------hHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVD--------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~d--------f~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+..+++|||||+.. |...+..+++.+|++|+|+|+.+|.......+++.+...++|+|+|+||+|+.
T Consensus 322 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~ 396 (712)
T PRK09518 322 GTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQ 396 (712)
T ss_pred CEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence 67899999999753 56677788999999999999999999888888888889999999999999986
No 154
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.27 E-value=3e-11 Score=121.64 Aligned_cols=112 Identities=20% Similarity=0.131 Sum_probs=78.2
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|..|+|||||+++|... .... + ..|.......+.+.
T Consensus 15 ~~~~~i~i---vG~~~~GKTsli~~l~~~--~~~~-------~----------~~t~~~~~~~~~~~------------- 59 (184)
T smart00178 15 NKHAKILF---LGLDNAGKTTLLHMLKND--RLAQ-------H----------QPTQHPTSEELAIG------------- 59 (184)
T ss_pred cccCEEEE---ECCCCCCHHHHHHHHhcC--CCcc-------c----------CCccccceEEEEEC-------------
Confidence 45689999 999999999999999432 1100 0 01111222233333
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchh-HHHHHHHHH----hCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQAL----GERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~-t~~~l~~~~----~~~~p~ilviNKiD~~ 155 (824)
+..++++||||+..+.......++.+|++|+|+|+.+..... ....+..+. ..++|+++|+||+|++
T Consensus 60 ---~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 131 (184)
T smart00178 60 ---NIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAP 131 (184)
T ss_pred ---CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 678999999999999888888999999999999998643222 222233332 2578999999999987
No 155
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.26 E-value=7.6e-11 Score=116.50 Aligned_cols=112 Identities=20% Similarity=0.193 Sum_probs=77.1
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
++|++ +|+.++|||||+++|+... ....... ..+ ..+ ....+ ++.
T Consensus 1 ~kv~i---vG~~~vGKTsl~~~l~~~~--~~~~~~~---~~~--------~~~-----~~~~~--------------~~~ 45 (166)
T cd01893 1 VRIVL---IGDEGVGKSSLIMSLVSEE--FPENVPR---VLP--------EIT-----IPADV--------------TPE 45 (166)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhCc--CCccCCC---ccc--------ceE-----eeeee--------------cCC
Confidence 47888 9999999999999996422 1110000 000 011 11111 224
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHH-HHHH--hCCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQAL--GERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l-~~~~--~~~~p~ilviNKiD~~ 155 (824)
...+++|||||+.++...+...++.+|++++|+|+......+.. ..| ..+. ..++|+++|+||+|+.
T Consensus 46 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~ 116 (166)
T cd01893 46 RVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLR 116 (166)
T ss_pred eEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 67899999999998888888888999999999999887665552 234 2232 2478999999999997
No 156
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.26 E-value=3e-11 Score=118.47 Aligned_cols=114 Identities=18% Similarity=0.190 Sum_probs=79.3
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
++|++ +|+.++|||||+++|+...- ... . .+.++.......+.+. +.
T Consensus 1 ~kv~v---~G~~~~GKTtli~~l~~~~~--~~~-~-------------~~~~~~~~~~~~~~~~--------------~~ 47 (164)
T smart00175 1 FKIIL---IGDSGVGKSSLLSRFTDGKF--SEQ-Y-------------KSTIGVDFKTKTIEVD--------------GK 47 (164)
T ss_pred CEEEE---ECCCCCCHHHHHHHHhcCCC--CCC-C-------------CCceeeEEEEEEEEEC--------------CE
Confidence 47889 99999999999999953221 110 0 0112222222223332 23
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHHh---CCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG---ERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~-~~~~---~~~p~ilviNKiD~~ 155 (824)
...+++|||||+..|.......++.+|++|+|+|+.+....+....|. .... .++|+++|+||+|+.
T Consensus 48 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~ 118 (164)
T smart00175 48 RVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLE 118 (164)
T ss_pred EEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence 468999999999999999999999999999999998865555444343 2222 468999999999986
No 157
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.26 E-value=3.1e-11 Score=121.96 Aligned_cols=112 Identities=21% Similarity=0.162 Sum_probs=78.4
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+..+|++ +|+.|+|||||+++|.. +.... ...|+......+.+.
T Consensus 17 ~~~~ki~i---lG~~~~GKStLi~~l~~--~~~~~-----------------~~~T~~~~~~~i~~~------------- 61 (190)
T cd00879 17 NKEAKILF---LGLDNAGKTTLLHMLKD--DRLAQ-----------------HVPTLHPTSEELTIG------------- 61 (190)
T ss_pred cCCCEEEE---ECCCCCCHHHHHHHHhc--CCCcc-----------------cCCccCcceEEEEEC-------------
Confidence 56789999 99999999999999842 11111 011222222334443
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchh-HHHHHHHHH----hCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQAL----GERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~-t~~~l~~~~----~~~~p~ilviNKiD~~ 155 (824)
+..++++||||+.+|.......++.+|++++|+|+.+.-... ....+..+. ..+.|+++|+||+|+.
T Consensus 62 ---~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~ 133 (190)
T cd00879 62 ---NIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLP 133 (190)
T ss_pred ---CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCC
Confidence 678999999999999888888899999999999998642221 222222222 3568999999999987
No 158
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.26 E-value=5.4e-11 Score=117.84 Aligned_cols=107 Identities=24% Similarity=0.273 Sum_probs=75.9
Q ss_pred EEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCce
Q 003378 11 VCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 90 (824)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (824)
|++ +|..++|||||+++|... .. . +...|+......+.+. ++
T Consensus 2 i~~---~G~~~~GKTsl~~~l~~~---~~----~------------~~~~t~g~~~~~~~~~----------------~~ 43 (167)
T cd04161 2 LLT---VGLDNAGKTTLVSALQGE---IP----K------------KVAPTVGFTPTKLRLD----------------KY 43 (167)
T ss_pred EEE---ECCCCCCHHHHHHHHhCC---CC----c------------cccCcccceEEEEEEC----------------CE
Confidence 667 999999999999998421 10 0 0112222222333343 78
Q ss_pred eEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchh-HHHHHHHHHh----CCCceEEEEeCCCcc
Q 003378 91 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQALG----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 91 ~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~-t~~~l~~~~~----~~~p~ilviNKiD~~ 155 (824)
.++++||||+..|.......++.+|++|+|+|+.+.-..+ ....+..+.. .++|+++|+||+|+.
T Consensus 44 ~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 113 (167)
T cd04161 44 EVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKK 113 (167)
T ss_pred EEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCc
Confidence 8999999999999988899999999999999998753322 2233343332 478999999999998
No 159
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.26 E-value=1.1e-10 Score=114.19 Aligned_cols=114 Identities=25% Similarity=0.245 Sum_probs=78.4
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
..+|++ +|..|+|||||+++|+...-.......+ .+..... .... .
T Consensus 3 ~~~i~~---~G~~g~GKttl~~~l~~~~~~~~~~~~~---------------~~~~~~~--~~~~--------------~ 48 (168)
T cd04163 3 SGFVAI---VGRPNVGKSTLLNALVGQKISIVSPKPQ---------------TTRNRIR--GIYT--------------D 48 (168)
T ss_pred eeEEEE---ECCCCCCHHHHHHHHhCCceEeccCCCC---------------ceeceEE--EEEE--------------c
Confidence 467899 9999999999999995332111000000 1111111 1111 1
Q ss_pred CceeEEEEcCCCccch--------HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDF--------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df--------~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
.+..+.+|||||+.+. .......++.+|++++|+|+.+........+++.+...+.|.++|+||+|+.
T Consensus 49 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 124 (168)
T cd04163 49 DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLV 124 (168)
T ss_pred CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcc
Confidence 2578999999998653 2345567889999999999998866666677777777789999999999986
No 160
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.25 E-value=5.3e-11 Score=110.30 Aligned_cols=107 Identities=22% Similarity=0.260 Sum_probs=74.9
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
+|++ +|.+|+|||||+++|+........ + ..+.|.......+.+. +
T Consensus 1 ~V~i---iG~~~~GKSTlin~l~~~~~~~~~---------~------~~~~T~~~~~~~~~~~----------------~ 46 (116)
T PF01926_consen 1 RVAI---IGRPNVGKSTLINALTGKKLAKVS---------N------IPGTTRDPVYGQFEYN----------------N 46 (116)
T ss_dssp EEEE---EESTTSSHHHHHHHHHTSTSSEES---------S------STTSSSSEEEEEEEET----------------T
T ss_pred CEEE---ECCCCCCHHHHHHHHhcccccccc---------c------cccceeeeeeeeeeec----------------e
Confidence 4788 999999999999999742211111 1 1233444433333343 6
Q ss_pred eeEEEEcCCCccc---------hHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeC
Q 003378 90 YLINLIDSPGHVD---------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNK 151 (824)
Q Consensus 90 ~~i~liDTPGh~d---------f~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNK 151 (824)
..+.|+||||..+ ........++.+|++++|+|+.+....+...+++.+. .+.|+++|+||
T Consensus 47 ~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 47 KKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp EEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred eeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 6788999999753 2334666668999999999988855556667777775 88999999998
No 161
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.25 E-value=3.6e-11 Score=119.03 Aligned_cols=112 Identities=21% Similarity=0.178 Sum_probs=76.1
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeece--EEEEEeechhhhhccccccC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG--ISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~--~~~~~~~~~~~~~~~~~~~~ 86 (824)
++|++ +|+.++|||||+++|+...- ... ...|+.... ..+.+ +
T Consensus 1 ~ki~v---iG~~~~GKSsl~~~l~~~~~--~~~----------------~~~t~~~~~~~~~~~~--------------~ 45 (172)
T cd01862 1 LKVII---LGDSGVGKTSLMNQYVNKKF--SNQ----------------YKATIGADFLTKEVTV--------------D 45 (172)
T ss_pred CEEEE---ECCCCCCHHHHHHHHhcCCC--CcC----------------cCCccceEEEEEEEEE--------------C
Confidence 47888 99999999999999954321 110 001111111 11222 2
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-----HH---hCCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-----AL---GERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~-----~~---~~~~p~ilviNKiD~~ 155 (824)
+....+++|||||+.+|.......++.+|++|+|+|+.+....+....|.. +. ..++|+++|+||+|+.
T Consensus 46 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (172)
T cd01862 46 DKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLE 122 (172)
T ss_pred CEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccc
Confidence 235678899999999999888889999999999999987654333333322 11 1278999999999997
No 162
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.23 E-value=3.3e-11 Score=137.59 Aligned_cols=112 Identities=23% Similarity=0.327 Sum_probs=82.7
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
.++|++ +|++|+|||||+++|+.....+..... |.|.+.....+.+.
T Consensus 215 ~~kV~i---vG~~nvGKSSLln~L~~~~~a~v~~~~---------------gtT~d~~~~~i~~~--------------- 261 (449)
T PRK05291 215 GLKVVI---AGRPNVGKSSLLNALLGEERAIVTDIA---------------GTTRDVIEEHINLD--------------- 261 (449)
T ss_pred CCEEEE---ECCCCCCHHHHHHHHhCCCCcccCCCC---------------CcccccEEEEEEEC---------------
Confidence 478999 999999999999999644322222112 34544444445554
Q ss_pred CceeEEEEcCCCccchHHH--------HHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e--------~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
++.+++|||||+.++... +...++.+|++++|+|+.++........|.. ..++|+++|+||+|+.
T Consensus 262 -g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~ 334 (449)
T PRK05291 262 -GIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLT 334 (449)
T ss_pred -CeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhcc
Confidence 678999999999775432 3346788999999999998877766666665 5678999999999997
No 163
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.23 E-value=5.9e-11 Score=116.65 Aligned_cols=111 Identities=23% Similarity=0.255 Sum_probs=74.9
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeec-eEEEEEeechhhhhccccccCCC
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
+|++ +|+.|+|||||+++++...-.... .. |+... .....+ ++.
T Consensus 2 ki~v---~G~~~~GKTsli~~~~~~~~~~~~--~~----------------t~~~~~~~~~~~--------------~~~ 46 (164)
T smart00173 2 KLVV---LGSGGVGKSALTIQFVQGHFVDDY--DP----------------TIEDSYRKQIEI--------------DGE 46 (164)
T ss_pred EEEE---ECCCCCCHHHHHHHHHhCcCCccc--CC----------------chhhhEEEEEEE--------------CCE
Confidence 7888 999999999999999643211000 00 11000 011112 223
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-----HHHHhCCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-----RQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-----~~~~~~~~p~ilviNKiD~~ 155 (824)
...+.+|||||+.+|.......++.+|++++|+|+.+.-......-| +.....++|+++|+||+|+.
T Consensus 47 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~ 118 (164)
T smart00173 47 VCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLE 118 (164)
T ss_pred EEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 57889999999999998888999999999999999875333222222 22223468999999999986
No 164
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.23 E-value=1.1e-10 Score=121.33 Aligned_cols=108 Identities=19% Similarity=0.260 Sum_probs=81.8
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
.+..|++ +|++|+|||||+++|+........ . ...|. + ++ +.
T Consensus 38 ~~~~i~i---vG~~~~GKstl~~~l~~~~~~~~~--------~------~~~g~-i-----~i-~~-------------- 79 (225)
T cd01882 38 PPLVVAV---VGPPGVGKTTLIKSLVKNYTKQNI--------S------DIKGP-I-----TV-VT-------------- 79 (225)
T ss_pred CCCEEEE---ECCCCCCHHHHHHHHHhhcccCcc--------c------ccccc-E-----EE-Ee--------------
Confidence 4567888 999999999999999654221000 0 01221 1 11 11
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceE-EEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~i-lviNKiD~~ 155 (824)
.++..++++||||+. ..+..+++.+|.+++|+|+.+|...++..+|..+...++|.+ +|+||+|+.
T Consensus 80 ~~~~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~ 146 (225)
T cd01882 80 GKKRRLTFIECPNDI---NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLF 146 (225)
T ss_pred cCCceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccC
Confidence 136789999999975 677788899999999999999999999999999988899965 499999986
No 165
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.22 E-value=7.1e-11 Score=116.63 Aligned_cols=108 Identities=19% Similarity=0.203 Sum_probs=75.4
Q ss_pred EEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCce
Q 003378 11 VCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 90 (824)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (824)
|++ +|..++|||||+.++....- .. ++ ..|+......+.+ ++.
T Consensus 2 i~i---vG~~~vGKTsli~~~~~~~~--~~---------~~-------~pt~g~~~~~i~~----------------~~~ 44 (164)
T cd04162 2 ILV---LGLDGAGKTSLLHSLSSERS--LE---------SV-------VPTTGFNSVAIPT----------------QDA 44 (164)
T ss_pred EEE---ECCCCCCHHHHHHHHhcCCC--cc---------cc-------cccCCcceEEEee----------------CCe
Confidence 567 99999999999999953211 00 00 0122222223333 378
Q ss_pred eEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHH--hCCCceEEEEeCCCcc
Q 003378 91 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL--GERIRPVLTVNKMDRC 155 (824)
Q Consensus 91 ~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~~~~--~~~~p~ilviNKiD~~ 155 (824)
.+.+|||||+.+|.......++.+|++|+|+|+.+....... ..+..+. ..++|+++|+||+|+.
T Consensus 45 ~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~ 112 (164)
T cd04162 45 IMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLP 112 (164)
T ss_pred EEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCc
Confidence 899999999999998888999999999999999875432222 2233332 2578999999999987
No 166
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.22 E-value=6e-11 Score=116.40 Aligned_cols=115 Identities=19% Similarity=0.184 Sum_probs=76.6
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
+++|++ +|+.++|||||+++|+...-.... ....|.+.... .+.+ ++
T Consensus 1 ~~ki~v---~G~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~~~~--~v~~--------------~~ 47 (163)
T cd01860 1 QFKLVL---LGDSSVGKSSLVLRFVKNEFSENQ--------------ESTIGAAFLTQ--TVNL--------------DD 47 (163)
T ss_pred CeEEEE---ECCCCCCHHHHHHHHHcCCCCCCC--------------CCccceeEEEE--EEEE--------------CC
Confidence 378999 999999999999999543211100 00011111111 1222 22
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHHh---CCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG---ERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~~~~~---~~~p~ilviNKiD~~ 155 (824)
.+..+++|||||+.+|.......++.+|++|+|+|+...-..... ..+..+.. .++|+++++||+|+.
T Consensus 48 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 119 (163)
T cd01860 48 TTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLE 119 (163)
T ss_pred EEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 367899999999999988888888999999999999865433222 22233333 357889999999986
No 167
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.22 E-value=5.3e-11 Score=117.74 Aligned_cols=114 Identities=18% Similarity=0.175 Sum_probs=78.6
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
++|++ +|..++|||||+++++... ... +...|+........+. .++.
T Consensus 1 ~ki~v---vG~~~vGKTsli~~~~~~~--~~~----------------~~~~t~~~~~~~~~~~------------~~~~ 47 (166)
T cd00877 1 FKLVL---VGDGGTGKTTFVKRHLTGE--FEK----------------KYVATLGVEVHPLDFH------------TNRG 47 (166)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhCC--CCC----------------CCCCceeeEEEEEEEE------------ECCE
Confidence 47888 9999999999999996322 111 0012332222222222 1234
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHh--CCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG--ERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~~--~~~p~ilviNKiD~~ 155 (824)
...+.+|||||+.+|.......++.+|++|+|+|.+++...+....| ..+.+ .++|+++|+||+|+.
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~ 117 (166)
T cd00877 48 KIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIK 117 (166)
T ss_pred EEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcc
Confidence 67899999999999887777788899999999999987655544333 33322 268999999999986
No 168
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.22 E-value=6.2e-11 Score=116.04 Aligned_cols=113 Identities=19% Similarity=0.198 Sum_probs=78.7
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
+|++ +|+.++|||||+++|+...-.... ..+++.+.....+.+. +..
T Consensus 2 ki~l---iG~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~--------------~~~ 48 (161)
T cd01861 2 KLVF---LGDQSVGKTSIITRFMYDTFDNQY----------------QATIGIDFLSKTMYLE--------------DKT 48 (161)
T ss_pred EEEE---ECCCCCCHHHHHHHHHcCCCCccC----------------CCceeeeEEEEEEEEC--------------CEE
Confidence 6888 999999999999999643221111 1122333322333332 234
Q ss_pred eeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHH-hC--CCceEEEEeCCCcc
Q 003378 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL-GE--RIRPVLTVNKMDRC 155 (824)
Q Consensus 90 ~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~-~~--~~p~ilviNKiD~~ 155 (824)
..+++|||||+..|.......++.+|++++|+|..+.-+.+....| .... .. ++|+++++||+|+.
T Consensus 49 ~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~ 118 (161)
T cd01861 49 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS 118 (161)
T ss_pred EEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc
Confidence 6799999999999998888999999999999999876554443333 3222 23 48999999999985
No 169
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.22 E-value=5e-11 Score=116.80 Aligned_cols=114 Identities=19% Similarity=0.222 Sum_probs=77.5
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
++|++ +|+.++|||||+++|+...-.... +...+.+.. ...+.+. +.
T Consensus 1 ~ki~v---~G~~~~GKSsli~~l~~~~~~~~~--------------~~~~~~~~~--~~~~~~~--------------~~ 47 (161)
T cd01863 1 LKILL---IGDSGVGKSSLLLRFTDDTFDPDL--------------AATIGVDFK--VKTLTVD--------------GK 47 (161)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHcCCCCccc--------------CCcccceEE--EEEEEEC--------------CE
Confidence 47888 999999999999999532211100 001111111 1122222 23
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-----HHhCCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-----ALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~-----~~~~~~p~ilviNKiD~~ 155 (824)
...+.+|||||+..|.......++.+|++++|+|+.+....+....|.. +...++|+++|+||+|+.
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 48 KVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred EEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc
Confidence 5789999999999998888888999999999999987655444433422 223578899999999987
No 170
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.21 E-value=9.4e-11 Score=113.21 Aligned_cols=109 Identities=25% Similarity=0.188 Sum_probs=79.4
Q ss_pred ccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCceeEEEEc
Q 003378 17 ANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLID 96 (824)
Q Consensus 17 ~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liD 96 (824)
+|+.|+|||||+++|......... ..++.|.........+. ....+++||
T Consensus 2 ~G~~gsGKstl~~~l~~~~~~~~~---------------~~~~~~~~~~~~~~~~~---------------~~~~~~~~D 51 (163)
T cd00880 2 FGRTNAGKSSLLNALLGQEVAIVS---------------PVPGTTTDPVEYVWELG---------------PLGPVVLID 51 (163)
T ss_pred cCCCCCCHHHHHHHHhCccccccC---------------CCCCcEECCeEEEEEec---------------CCCcEEEEE
Confidence 899999999999999543222111 01223333333333332 256899999
Q ss_pred CCCccchH-------HHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 97 SPGHVDFS-------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 97 TPGh~df~-------~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
|||+.++. ..+...++.+|++++|+|+..+.......++......+.|.++|+||+|+.
T Consensus 52 t~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~ 117 (163)
T cd00880 52 TPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLL 117 (163)
T ss_pred CCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccC
Confidence 99987764 345567899999999999999888777766677778899999999999987
No 171
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.21 E-value=7.9e-11 Score=116.45 Aligned_cols=116 Identities=19% Similarity=0.161 Sum_probs=79.1
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
.+++|++ +|..++|||||++++.... .... . ...+++......+.+.
T Consensus 2 ~~~ki~v---vG~~~~GKSsl~~~~~~~~--f~~~--~------------~~t~~~~~~~~~~~~~-------------- 48 (167)
T cd01867 2 YLFKLLL---IGDSGVGKSCLLLRFSEDS--FNPS--F------------ISTIGIDFKIRTIELD-------------- 48 (167)
T ss_pred cceEEEE---ECCCCCCHHHHHHHHhhCc--CCcc--c------------ccCccceEEEEEEEEC--------------
Confidence 3589999 9999999999999995321 1110 0 0001111111222332
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHH---hCCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL---GERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~-~~~---~~~~p~ilviNKiD~~ 155 (824)
+....+.+|||||+.+|.......++.+|++|+|+|+.++...+...-|. .+. ..++|++++.||+|+.
T Consensus 49 ~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~ 121 (167)
T cd01867 49 GKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDME 121 (167)
T ss_pred CEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 23568999999999999988888899999999999998765544333333 222 2467999999999997
No 172
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.21 E-value=1.3e-10 Score=114.81 Aligned_cols=112 Identities=19% Similarity=0.143 Sum_probs=77.5
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeece--EEEEEeechhhhhccccccC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG--ISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~--~~~~~~~~~~~~~~~~~~~~ 86 (824)
++|++ +|+.++|||||++++... ....... .|+.... ..+.. +
T Consensus 3 ~ki~i---iG~~~vGKTsli~~~~~~--~~~~~~~----------------~t~~~~~~~~~~~~--------------~ 47 (166)
T cd04122 3 FKYII---IGDMGVGKSCLLHQFTEK--KFMADCP----------------HTIGVEFGTRIIEV--------------N 47 (166)
T ss_pred eEEEE---ECCCCCCHHHHHHHHhcC--CCCCCCC----------------cccceeEEEEEEEE--------------C
Confidence 78999 999999999999999532 2111000 1111111 11222 2
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHH---hCCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL---GERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~-~~~---~~~~p~ilviNKiD~~ 155 (824)
+..+.+.+|||||+..|.......++.+|++|+|+|..+....+....|. .+. ..+.|+++|.||+|+.
T Consensus 48 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~ 120 (166)
T cd04122 48 GQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 120 (166)
T ss_pred CEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 33578899999999999998899999999999999998765444443332 222 2457889999999986
No 173
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.20 E-value=1e-10 Score=113.46 Aligned_cols=108 Identities=21% Similarity=0.182 Sum_probs=74.7
Q ss_pred EEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCce
Q 003378 11 VCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 90 (824)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (824)
|++ +|+.|+|||||+++|....- . .++. .|+......+.+. +.
T Consensus 2 i~i---~G~~~~GKssl~~~l~~~~~--~---------~~~~-------~t~~~~~~~~~~~----------------~~ 44 (159)
T cd04159 2 ITL---VGLQNSGKTTLVNVIAGGQF--S---------EDTI-------PTVGFNMRKVTKG----------------NV 44 (159)
T ss_pred EEE---EcCCCCCHHHHHHHHccCCC--C---------cCcc-------CCCCcceEEEEEC----------------CE
Confidence 677 99999999999999943211 0 0110 1222222223332 57
Q ss_pred eEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcch-hHHHHHHHHHh----CCCceEEEEeCCCcc
Q 003378 91 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQALG----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 91 ~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~-~t~~~l~~~~~----~~~p~ilviNKiD~~ 155 (824)
.+.+|||||+..|.......++.+|++++|+|+.+.... +....+..+.. .++|+++|+||+|..
T Consensus 45 ~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 114 (159)
T cd04159 45 TLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLP 114 (159)
T ss_pred EEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 899999999999999999999999999999999864322 22233333322 478999999999987
No 174
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.20 E-value=1.8e-10 Score=112.47 Aligned_cols=114 Identities=21% Similarity=0.178 Sum_probs=76.9
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
++|++ +|..++|||||+++|+...-.... . .|+.......... ..+.
T Consensus 1 ~ki~i---~G~~~~GKStli~~l~~~~~~~~~--~----------------~~~~~~~~~~~~~------------~~~~ 47 (162)
T cd04123 1 FKVVL---LGEGRVGKTSLVLRYVENKFNEKH--E----------------STTQASFFQKTVN------------IGGK 47 (162)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhCCCCCCc--C----------------CccceeEEEEEEE------------ECCE
Confidence 47889 999999999999999643221110 0 0111111111111 0123
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH----HHHhCCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR----QALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~----~~~~~~~p~ilviNKiD~~ 155 (824)
...+++|||||+..|.......++.+|++++|+|..++-..+....|. .....++|+++|+||+|+.
T Consensus 48 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~ 118 (162)
T cd04123 48 RIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLE 118 (162)
T ss_pred EEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 567999999999998888888889999999999998876544443332 2223368999999999987
No 175
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.20 E-value=1.5e-10 Score=114.80 Aligned_cols=112 Identities=19% Similarity=0.155 Sum_probs=76.7
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|+.++|||||+.+|.. +.... .. .|+......+.+
T Consensus 7 ~~~~kv~i---~G~~~~GKTsli~~l~~--~~~~~----------~~-------~t~g~~~~~~~~-------------- 50 (168)
T cd04149 7 NKEMRILM---LGLDAAGKTTILYKLKL--GQSVT----------TI-------PTVGFNVETVTY-------------- 50 (168)
T ss_pred CCccEEEE---ECcCCCCHHHHHHHHcc--CCCcc----------cc-------CCcccceEEEEE--------------
Confidence 35689999 99999999999999942 11100 00 111111112222
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchh-HHHHHHHHHh----CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQALG----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~-t~~~l~~~~~----~~~p~ilviNKiD~~ 155 (824)
.+..+++|||||+..|.......++.+|++|+|+|+.+-.... ....|..... .++|++||.||+|+.
T Consensus 51 --~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 123 (168)
T cd04149 51 --KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLP 123 (168)
T ss_pred --CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCc
Confidence 2688999999999999887888899999999999998743221 2233333322 357999999999986
No 176
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.20 E-value=1.5e-10 Score=113.91 Aligned_cols=112 Identities=21% Similarity=0.278 Sum_probs=76.8
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeece-EEEEEeechhhhhccccccCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~ 87 (824)
++|++ +|..|+|||||+.+++. |........ |+.... ..+.. ++
T Consensus 2 ~ki~~---~G~~~~GKTsli~~~~~--~~~~~~~~~----------------t~~~~~~~~~~~--------------~~ 46 (164)
T cd04175 2 YKLVV---LGSGGVGKSALTVQFVQ--GIFVEKYDP----------------TIEDSYRKQVEV--------------DG 46 (164)
T ss_pred cEEEE---ECCCCCCHHHHHHHHHh--CCCCcccCC----------------cchheEEEEEEE--------------CC
Confidence 67899 99999999999999963 322111011 111111 11222 23
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHH----hCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL----GERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~~~~----~~~~p~ilviNKiD~~ 155 (824)
..+.+++|||||+..|.......++.+|++++|+|..+....+.. ..+..+. ..++|+++++||+|+.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (164)
T cd04175 47 QQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 119 (164)
T ss_pred EEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcch
Confidence 467888999999999999999999999999999998765443322 2223222 3578999999999986
No 177
>PTZ00369 Ras-like protein; Provisional
Probab=99.20 E-value=8.1e-11 Score=119.03 Aligned_cols=113 Identities=20% Similarity=0.226 Sum_probs=77.4
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeece-EEEEEeechhhhhccccccC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~ 86 (824)
.++|++ +|+.|+|||||+.+++...- ... +. .|+.... ..+.. +
T Consensus 5 ~~Ki~i---iG~~~~GKTsLi~~~~~~~~--~~~---------~~-------~t~~~~~~~~~~~--------------~ 49 (189)
T PTZ00369 5 EYKLVV---VGGGGVGKSALTIQFIQNHF--IDE---------YD-------PTIEDSYRKQCVI--------------D 49 (189)
T ss_pred ceEEEE---ECCCCCCHHHHHHHHhcCCC--CcC---------cC-------CchhhEEEEEEEE--------------C
Confidence 489999 99999999999999964221 110 00 0111000 11111 2
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HH----HhCCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QA----LGERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~-~~----~~~~~p~ilviNKiD~~ 155 (824)
+..+.++||||||+.+|.......++.+|++++|+|..+........-|. .+ ...++|+++|+||+|+.
T Consensus 50 ~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 123 (189)
T PTZ00369 50 EETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLD 123 (189)
T ss_pred CEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 23678999999999999999899999999999999998765433333222 22 23478999999999986
No 178
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.19 E-value=1.4e-10 Score=114.36 Aligned_cols=115 Identities=17% Similarity=0.182 Sum_probs=77.4
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
+++|++ +|..|+|||||+++++...-.... . ..+++......+.+. +
T Consensus 2 ~~ki~i---~G~~~vGKSsli~~~~~~~~~~~~--~--------------~t~~~~~~~~~~~~~--------------~ 48 (166)
T cd01869 2 LFKLLL---IGDSGVGKSCLLLRFADDTYTESY--I--------------STIGVDFKIRTIELD--------------G 48 (166)
T ss_pred eEEEEE---ECCCCCCHHHHHHHHhcCCCCCCC--C--------------CccceeEEEEEEEEC--------------C
Confidence 478999 999999999999999532211000 0 011222222222222 2
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHh---CCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~~---~~~p~ilviNKiD~~ 155 (824)
....+.+|||||+.+|.......++.+|++|+|+|+.+.-.......| ..+.. .++|++++.||+|+.
T Consensus 49 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 120 (166)
T cd01869 49 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120 (166)
T ss_pred EEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcc
Confidence 356899999999999998888899999999999999875433332223 22222 467999999999986
No 179
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.19 E-value=1.3e-10 Score=113.59 Aligned_cols=112 Identities=21% Similarity=0.275 Sum_probs=75.6
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeec-eEEEEEeechhhhhccccccCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
++|++ +|..|+|||||+++|+... ....... |+... ...+.+ ++
T Consensus 2 ~ki~i---iG~~~vGKTsl~~~~~~~~--~~~~~~~----------------t~~~~~~~~~~~--------------~~ 46 (162)
T cd04138 2 YKLVV---VGAGGVGKSALTIQLIQNH--FVDEYDP----------------TIEDSYRKQVVI--------------DG 46 (162)
T ss_pred eEEEE---ECCCCCCHHHHHHHHHhCC--CcCCcCC----------------cchheEEEEEEE--------------CC
Confidence 68899 9999999999999996432 1110000 11000 111222 12
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHHH----HhCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQA----LGERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~-~l~~~----~~~~~p~ilviNKiD~~ 155 (824)
..+.+++|||||+.+|.......++.+|++++|+|..+....+... .+..+ ...++|+++|+||+|+.
T Consensus 47 ~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 119 (162)
T cd04138 47 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLA 119 (162)
T ss_pred EEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 3567889999999999999999999999999999988644333222 22222 23478999999999987
No 180
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.19 E-value=1.2e-10 Score=114.63 Aligned_cols=114 Identities=20% Similarity=0.210 Sum_probs=76.2
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
++|++ +|+.++|||||+++|+...-.... . ..++.+.....+.+ ++.
T Consensus 1 ~ki~~---vG~~~vGKTsli~~l~~~~~~~~~--~--------------~t~~~~~~~~~~~~--------------~~~ 47 (168)
T cd04119 1 IKVIS---MGNSGVGKSCIIKRYCEGRFVSKY--L--------------PTIGIDYGVKKVSV--------------RNK 47 (168)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhCCCCCCC--C--------------CccceeEEEEEEEE--------------CCe
Confidence 57899 999999999999999543211000 0 00111111112222 234
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHh--------CCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG--------ERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~~--------~~~p~ilviNKiD~~ 155 (824)
...++||||||+.+|.......++.+|++|+|+|.++....+...-| ..+.+ .+.|+++|+||.|+.
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 48 EVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred EEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence 67899999999999988888888999999999999875443333333 22221 457899999999986
No 181
>PRK04213 GTP-binding protein; Provisional
Probab=99.19 E-value=1.8e-10 Score=117.55 Aligned_cols=110 Identities=24% Similarity=0.264 Sum_probs=73.4
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
..++|++ +|+.|+|||||+++|.... .. .+ ...|.|.... .+.+
T Consensus 8 ~~~~i~i---~G~~~~GKSsLin~l~~~~--~~---~~-----------~~~~~t~~~~--~~~~--------------- 51 (201)
T PRK04213 8 RKPEIVF---VGRSNVGKSTLVRELTGKK--VR---VG-----------KRPGVTRKPN--HYDW--------------- 51 (201)
T ss_pred CCCEEEE---ECCCCCCHHHHHHHHhCCC--Cc---cC-----------CCCceeeCce--EEee---------------
Confidence 4578999 9999999999999994211 10 01 1224444422 2222
Q ss_pred CCceeEEEEcCCCcc-----------chHHHHHH----HHHhcCEEEEEEeCCCC-----------cchhHHHHHHHHHh
Q 003378 87 GNEYLINLIDSPGHV-----------DFSSEVTA----ALRITDGALVVVDCIEG-----------VCVQTETVLRQALG 140 (824)
Q Consensus 87 ~~~~~i~liDTPGh~-----------df~~e~~~----~l~~~D~avlvvd~~~g-----------v~~~t~~~l~~~~~ 140 (824)
+ .+++|||||+. .|...+.. ++..+|++++|+|+... ....+..++..+..
T Consensus 52 --~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 128 (201)
T PRK04213 52 --G-DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE 128 (201)
T ss_pred --c-ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH
Confidence 2 58999999952 33332222 34567899999999653 22345667777777
Q ss_pred CCCceEEEEeCCCcc
Q 003378 141 ERIRPVLTVNKMDRC 155 (824)
Q Consensus 141 ~~~p~ilviNKiD~~ 155 (824)
.++|+++|+||+|+.
T Consensus 129 ~~~p~iiv~NK~Dl~ 143 (201)
T PRK04213 129 LGIPPIVAVNKMDKI 143 (201)
T ss_pred cCCCeEEEEECcccc
Confidence 899999999999987
No 182
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.19 E-value=2.5e-10 Score=112.98 Aligned_cols=117 Identities=21% Similarity=0.160 Sum_probs=79.0
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +|..++|||||+.+++. +..... . ...++.......+.+
T Consensus 3 ~~~~ki~v---vG~~~~GKTsli~~~~~--~~~~~~--~------------~~~~~~~~~~~~~~~-------------- 49 (170)
T cd04116 3 SSLLKVIL---LGDGGVGKSSLMNRYVT--NKFDTQ--L------------FHTIGVEFLNKDLEV-------------- 49 (170)
T ss_pred ceEEEEEE---ECCCCCCHHHHHHHHHc--CCCCcC--c------------CCceeeEEEEEEEEE--------------
Confidence 35689999 99999999999999953 211110 0 001111111112222
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HH-------hCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-AL-------GERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~-~~-------~~~~p~ilviNKiD~~ 155 (824)
++....+.||||||+..|.......++.+|++|+|+|..+....+...-|.. +. ..++|++++.||+|+.
T Consensus 50 ~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 50 DGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred CCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 2346788999999999999888889999999999999887654444333322 11 2467999999999985
No 183
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.18 E-value=2.4e-10 Score=112.17 Aligned_cols=109 Identities=21% Similarity=0.202 Sum_probs=74.0
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
++|++ +|+.++|||||+.++.. +... ++. .|+......+.+ .
T Consensus 1 ~kv~~---~G~~~~GKTsli~~l~~--~~~~----------~~~-------pt~g~~~~~~~~----------------~ 42 (159)
T cd04150 1 MRILM---VGLDAAGKTTILYKLKL--GEIV----------TTI-------PTIGFNVETVEY----------------K 42 (159)
T ss_pred CEEEE---ECCCCCCHHHHHHHHhc--CCCc----------ccC-------CCCCcceEEEEE----------------C
Confidence 47888 99999999999999942 2111 011 111111112223 2
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcch-hHHHHHHHHHh----CCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQALG----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~-~t~~~l~~~~~----~~~p~ilviNKiD~~ 155 (824)
...+++|||||+..|.......++.+|++|+|+|+.+-... +....|..+.. .+.|+++++||+|+.
T Consensus 43 ~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 114 (159)
T cd04150 43 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLP 114 (159)
T ss_pred CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCC
Confidence 67899999999999988888889999999999999863221 12223333322 357899999999986
No 184
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.18 E-value=1.2e-10 Score=112.94 Aligned_cols=114 Identities=18% Similarity=0.194 Sum_probs=77.1
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
++|++ +|+.++|||||+++|....-.... .+..+.......+... +.
T Consensus 1 ~~i~~---~G~~~~GKStl~~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~--------------~~ 47 (159)
T cd00154 1 FKIVL---IGDSGVGKTSLLLRFVDGKFDENY----------------KSTIGVDFKSKTIEID--------------GK 47 (159)
T ss_pred CeEEE---ECCCCCCHHHHHHHHHhCcCCCcc----------------CCceeeeeEEEEEEEC--------------CE
Confidence 46888 999999999999999532221110 0001111112222221 23
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHhC---CCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALGE---RIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~~~---~~p~ilviNKiD~~ 155 (824)
...+++|||||+..|.......++.+|++|+|+|+.+.-.......| ..+... +.|.++++||+|+.
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 48 TVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred EEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 57899999999999999999999999999999999874433333333 334333 48999999999985
No 185
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.18 E-value=2.6e-10 Score=114.59 Aligned_cols=112 Identities=21% Similarity=0.166 Sum_probs=77.5
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|..++|||||+.+|.. +.... . .-|+......+.+.
T Consensus 15 ~~~~ki~i---vG~~~~GKTsl~~~l~~--~~~~~----------~-------~pt~g~~~~~~~~~------------- 59 (181)
T PLN00223 15 KKEMRILM---VGLDAAGKTTILYKLKL--GEIVT----------T-------IPTIGFNVETVEYK------------- 59 (181)
T ss_pred CCccEEEE---ECCCCCCHHHHHHHHcc--CCCcc----------c-------cCCcceeEEEEEEC-------------
Confidence 45689999 99999999999999942 21111 0 01222222223332
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhH-HHHHHHHHh----CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 155 (824)
+..+++|||||+..|.......++.+|++|+|+|+++...... ...+..... .++|++||.||+|+.
T Consensus 60 ---~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~ 131 (181)
T PLN00223 60 ---NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
T ss_pred ---CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCC
Confidence 6889999999999998888888999999999999986433221 122222221 367899999999987
No 186
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.18 E-value=1.2e-10 Score=118.67 Aligned_cols=109 Identities=18% Similarity=0.184 Sum_probs=79.5
Q ss_pred ccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCceeEEEEc
Q 003378 17 ANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLID 96 (824)
Q Consensus 17 ~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liD 96 (824)
+|..++|||||+.+++. +.... ++..|+........+. .+++...++|||
T Consensus 1 vG~~~vGKTsLi~r~~~--~~f~~----------------~~~~Tig~~~~~~~~~------------~~~~~~~l~iwD 50 (200)
T smart00176 1 VGDGGTGKTTFVKRHLT--GEFEK----------------KYVATLGVEVHPLVFH------------TNRGPIRFNVWD 50 (200)
T ss_pred CCCCCCCHHHHHHHHhc--CCCCC----------------CCCCceeEEEEEEEEE------------ECCEEEEEEEEE
Confidence 59999999999999952 22111 1123443333333332 123468999999
Q ss_pred CCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HHh--CCCceEEEEeCCCcc
Q 003378 97 SPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG--ERIRPVLTVNKMDRC 155 (824)
Q Consensus 97 TPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~-~~~--~~~p~ilviNKiD~~ 155 (824)
|||+.+|.......++.+|++|+|+|.+...+.+....|.. +.+ .++|++||.||+|+.
T Consensus 51 t~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 112 (200)
T smart00176 51 TAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVK 112 (200)
T ss_pred CCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 99999999988899999999999999999877666555544 333 578999999999985
No 187
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.18 E-value=7.1e-11 Score=120.43 Aligned_cols=111 Identities=14% Similarity=0.161 Sum_probs=75.2
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccce-eeceEEEEEeechhhhhccccccCCC
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITI-KSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi-~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
+|++ +|+.|+|||||+++++... .... . .-|+ ......+.+. +.
T Consensus 1 kv~v---vG~~~vGKTsll~~~~~~~--~~~~-~---------------~~t~~~~~~~~~~~~--------------~~ 45 (198)
T cd04147 1 RLVF---MGAAGVGKTALIQRFLYDT--FEPK-Y---------------RRTVEEMHRKEYEVG--------------GV 45 (198)
T ss_pred CEEE---ECCCCCCHHHHHHHHHhCC--CCcc-C---------------CCchhhheeEEEEEC--------------CE
Confidence 4677 9999999999999996422 1110 0 0011 1111222232 23
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-----HHHHhCCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-----RQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-----~~~~~~~~p~ilviNKiD~~ 155 (824)
...++||||||+.+|......+++.+|++|+|+|+++....+....| ......++|+|+|+||+|+.
T Consensus 46 ~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 117 (198)
T cd04147 46 SLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSL 117 (198)
T ss_pred EEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccc
Confidence 46899999999999988778889999999999999876443322222 22223578999999999986
No 188
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.18 E-value=3.1e-10 Score=115.98 Aligned_cols=113 Identities=20% Similarity=0.203 Sum_probs=77.4
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeec--eEEEEEeechhhhhccccccC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST--GISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~--~~~~~~~~~~~~~~~~~~~~~ 86 (824)
++|++ +|..++|||||+++|+... .... ...|+... ...+.+. +
T Consensus 1 ~Kivi---vG~~~vGKTsli~~l~~~~--~~~~----------------~~~t~~~d~~~~~v~~~-------------~ 46 (201)
T cd04107 1 LKVLV---IGDLGVGKTSIIKRYVHGI--FSQH----------------YKATIGVDFALKVIEWD-------------P 46 (201)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHcCC--CCCC----------------CCCceeEEEEEEEEEEC-------------C
Confidence 47888 9999999999999995421 1110 00122211 1122221 1
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HH-------hCCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-AL-------GERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~-~~-------~~~~p~ilviNKiD~~ 155 (824)
+..+.++||||||+..|.......++.+|++|+|+|.......+....|.. +. ..++|+++|.||+|+.
T Consensus 47 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 47 NTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred CCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 346789999999999998888889999999999999887544444333321 11 2567999999999986
No 189
>PLN03118 Rab family protein; Provisional
Probab=99.18 E-value=1.6e-10 Score=118.96 Aligned_cols=116 Identities=19% Similarity=0.246 Sum_probs=80.2
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +|+.++|||||+.+|+... ... .. ..++.......+.+.
T Consensus 12 ~~~~kv~i---vG~~~vGKTsli~~l~~~~--~~~--~~-------------~t~~~~~~~~~~~~~------------- 58 (211)
T PLN03118 12 DLSFKILL---IGDSGVGKSSLLVSFISSS--VED--LA-------------PTIGVDFKIKQLTVG------------- 58 (211)
T ss_pred CcceEEEE---ECcCCCCHHHHHHHHHhCC--CCC--cC-------------CCceeEEEEEEEEEC-------------
Confidence 45689999 9999999999999996432 111 00 011111112222222
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHH-----hCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL-----GERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~~~~-----~~~~p~ilviNKiD~~ 155 (824)
+..+.++||||||+.+|.......++.+|++|+|+|..+....+.. ..|.... ..++|+++|+||+|+.
T Consensus 59 -~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 133 (211)
T PLN03118 59 -GKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRE 133 (211)
T ss_pred -CEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 2357899999999999999889999999999999999876544443 2343322 2457889999999986
No 190
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.18 E-value=1.2e-10 Score=114.92 Aligned_cols=112 Identities=18% Similarity=0.188 Sum_probs=76.3
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeece-EEEEEeechhhhhccccccCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~ 87 (824)
++|++ +|..|+|||||+++++... .... +. .|+.... ..+.+ +.
T Consensus 2 ~kv~~---vG~~~vGKTsli~~~~~~~--f~~~------~~----------~t~~~~~~~~~~~--------------~~ 46 (165)
T cd04140 2 YRVVV---FGAGGVGKSSLVLRFVKGT--FRES------YI----------PTIEDTYRQVISC--------------SK 46 (165)
T ss_pred eEEEE---ECCCCCCHHHHHHHHHhCC--CCCC------cC----------CcchheEEEEEEE--------------CC
Confidence 57899 9999999999999995321 1110 00 0111000 01111 12
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHHh------CCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG------ERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~~~~~------~~~p~ilviNKiD~~ 155 (824)
+...+++|||||+.+|......+++.+|++|+|+|.......... ..+..+.. .++|+++|.||+|+.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (165)
T cd04140 47 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES 121 (165)
T ss_pred EEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc
Confidence 357899999999999988888889999999999999876554332 33333332 468999999999986
No 191
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.18 E-value=3.8e-10 Score=114.53 Aligned_cols=115 Identities=17% Similarity=0.191 Sum_probs=77.2
Q ss_pred CceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccc
Q 003378 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 5 ~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (824)
+....+|++ +|+.|+|||||+++|+..... ... .+ ..|.|...... .+
T Consensus 21 ~~~~~~v~i---vG~~~~GKSsli~~l~~~~~~-~~~-~~------------~~~~t~~~~~~--~~------------- 68 (196)
T PRK00454 21 PDDGPEIAF---AGRSNVGKSSLINALTNRKNL-ART-SK------------TPGRTQLINFF--EV------------- 68 (196)
T ss_pred CCCCCEEEE---EcCCCCCHHHHHHHHhCCCCc-ccc-cC------------CCCceeEEEEE--ec-------------
Confidence 356688999 999999999999999642211 000 00 11223322211 11
Q ss_pred cCCCceeEEEEcCCCcc----------chHHHHHHHHHh---cCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeC
Q 003378 85 RQGNEYLINLIDSPGHV----------DFSSEVTAALRI---TDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNK 151 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~----------df~~e~~~~l~~---~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNK 151 (824)
+..+.||||||+. .|...+...++. ++++++|+|+..+.......+++.+...++|+++++||
T Consensus 69 ----~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK 144 (196)
T PRK00454 69 ----NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTK 144 (196)
T ss_pred ----CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEEC
Confidence 3579999999963 343334444444 46788999998887777666777777789999999999
Q ss_pred CCcc
Q 003378 152 MDRC 155 (824)
Q Consensus 152 iD~~ 155 (824)
+|+.
T Consensus 145 ~Dl~ 148 (196)
T PRK00454 145 ADKL 148 (196)
T ss_pred cccC
Confidence 9986
No 192
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.18 E-value=2.4e-10 Score=114.11 Aligned_cols=112 Identities=20% Similarity=0.157 Sum_probs=78.0
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|..++|||||+.+|.. +... +.. .|+......+.+.
T Consensus 11 ~~~~ki~l---~G~~~~GKTsL~~~~~~--~~~~----------~~~-------~t~~~~~~~~~~~------------- 55 (175)
T smart00177 11 NKEMRILM---VGLDAAGKTTILYKLKL--GESV----------TTI-------PTIGFNVETVTYK------------- 55 (175)
T ss_pred CCccEEEE---EcCCCCCHHHHHHHHhc--CCCC----------CcC-------CccccceEEEEEC-------------
Confidence 34689999 99999999999999942 2110 000 1222222223332
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcch-hHHHHHHHHHh----CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQALG----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~-~t~~~l~~~~~----~~~p~ilviNKiD~~ 155 (824)
+..+.||||||+..|.......++.+|++|+|+|+++--.. .....|..+.. .++|++||.||+|+.
T Consensus 56 ---~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 127 (175)
T smart00177 56 ---NISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLP 127 (175)
T ss_pred ---CEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcc
Confidence 67899999999999988888889999999999998863221 22334444332 357899999999987
No 193
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.17 E-value=3.1e-10 Score=111.15 Aligned_cols=113 Identities=20% Similarity=0.257 Sum_probs=75.3
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
++|++ +|.+|+|||||+++|+... ......+. ..+ .. .....+ ++.
T Consensus 1 ~ki~~---~G~~~~GKTsl~~~l~~~~--~~~~~~~~--~~~----------~~---~~~~~~--------------~~~ 46 (164)
T cd04139 1 YKVIV---VGAGGVGKSALTLQFMYDE--FVEDYEPT--KAD----------SY---RKKVVL--------------DGE 46 (164)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhCC--CccccCCc--chh----------hE---EEEEEE--------------CCE
Confidence 37888 9999999999999996322 11110110 000 00 001111 223
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcc-----hhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----VQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~-----~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
...+.+|||||+.+|......+++.+|++++|+|....-. .....+++.....++|+++|+||+|+.
T Consensus 47 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~ 118 (164)
T cd04139 47 DVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLE 118 (164)
T ss_pred EEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccc
Confidence 6789999999999999999999999999999999876422 112222222223579999999999987
No 194
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.17 E-value=1.7e-10 Score=113.96 Aligned_cols=111 Identities=21% Similarity=0.199 Sum_probs=68.9
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
+|++ +|+.|+|||||+++|+........ ..+.|.......+.+. +
T Consensus 2 ~i~~---~G~~~~GKssli~~l~~~~~~~~~----------------~~~~t~~~~~~~~~~~----------------~ 46 (168)
T cd01897 2 TLVI---AGYPNVGKSSLVNKLTRAKPEVAP----------------YPFTTKSLFVGHFDYK----------------Y 46 (168)
T ss_pred eEEE---EcCCCCCHHHHHHHHhcCCCccCC----------------CCCcccceeEEEEccC----------------c
Confidence 5788 999999999999999543211000 0122333332233332 6
Q ss_pred eeEEEEcCCCccchH--------HHHHHHH-HhcCEEEEEEeCCCCcc---hhHHHHHHHHHhC--CCceEEEEeCCCcc
Q 003378 90 YLINLIDSPGHVDFS--------SEVTAAL-RITDGALVVVDCIEGVC---VQTETVLRQALGE--RIRPVLTVNKMDRC 155 (824)
Q Consensus 90 ~~i~liDTPGh~df~--------~e~~~~l-~~~D~avlvvd~~~gv~---~~t~~~l~~~~~~--~~p~ilviNKiD~~ 155 (824)
..++||||||+.+.. .....++ ..+|++|+|+|+.+... ......+..+... +.|+|+|+||+|+.
T Consensus 47 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~ 126 (168)
T cd01897 47 LRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLL 126 (168)
T ss_pred eEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccC
Confidence 799999999985321 1122222 34699999999986432 1122344444444 78999999999997
No 195
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.17 E-value=1.9e-10 Score=117.38 Aligned_cols=111 Identities=18% Similarity=0.217 Sum_probs=79.1
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeec--eEEEEEeechhhhhccccccCC
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST--GISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~--~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
.|++ +|..++|||||+.++.. +..... ...|+... ...+.+ ++
T Consensus 2 ~vvv---lG~~gVGKTSli~r~~~--~~f~~~----------------~~~Ti~~~~~~~~i~~--------------~~ 46 (202)
T cd04120 2 QVII---IGSRGVGKTSLMRRFTD--DTFCEA----------------CKSGVGVDFKIKTVEL--------------RG 46 (202)
T ss_pred EEEE---ECcCCCCHHHHHHHHHh--CCCCCc----------------CCCcceeEEEEEEEEE--------------CC
Confidence 5777 99999999999999953 222110 01222222 122223 23
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHH----hCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL----GERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~----~~~~p~ilviNKiD~~ 155 (824)
+...++||||||+..|.......++.+|++|+|+|.++.-+.+...-|.... ..++|+++|.||+|+.
T Consensus 47 ~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~ 118 (202)
T cd04120 47 KKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 118 (202)
T ss_pred EEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 4688999999999999998999999999999999999876665554443322 2467899999999986
No 196
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.17 E-value=1.5e-10 Score=127.23 Aligned_cols=114 Identities=19% Similarity=0.281 Sum_probs=91.6
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
.-++++| +|.+|+|||||+|+|+.+...|....+|+ |.+.-...+..+
T Consensus 216 ~G~kvvI---iG~PNvGKSSLLNaL~~~d~AIVTdI~GT---------------TRDviee~i~i~-------------- 263 (454)
T COG0486 216 EGLKVVI---IGRPNVGKSSLLNALLGRDRAIVTDIAGT---------------TRDVIEEDINLN-------------- 263 (454)
T ss_pred cCceEEE---ECCCCCcHHHHHHHHhcCCceEecCCCCC---------------ccceEEEEEEEC--------------
Confidence 3478999 99999999999999999999988887874 334434444444
Q ss_pred CCceeEEEEcCCCccc---hHH-----HHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVD---FSS-----EVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~d---f~~-----e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
++.+.++||+|..+ ... ....++..||.+++|+|+++....+...++. +...+.|+++|+||.|+.
T Consensus 264 --G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~ 337 (454)
T COG0486 264 --GIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLV 337 (454)
T ss_pred --CEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcc
Confidence 89999999999753 321 2456678999999999999987777777766 667788999999999998
No 197
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.16 E-value=1.9e-10 Score=114.21 Aligned_cols=112 Identities=16% Similarity=0.123 Sum_probs=77.2
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|+.|+|||||+++|.... ... ...|.......+.+.
T Consensus 12 ~~~~~v~i---~G~~g~GKStLl~~l~~~~--~~~-----------------~~~t~g~~~~~i~~~------------- 56 (173)
T cd04155 12 SEEPRILI---LGLDNAGKTTILKQLASED--ISH-----------------ITPTQGFNIKTVQSD------------- 56 (173)
T ss_pred CCccEEEE---EccCCCCHHHHHHHHhcCC--Ccc-----------------cCCCCCcceEEEEEC-------------
Confidence 45789999 9999999999999994211 000 001111111233332
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcch-hHHHHHHH----HHhCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQ----ALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~-~t~~~l~~----~~~~~~p~ilviNKiD~~ 155 (824)
+..+.+|||||+..|...+...++.+|++++|+|+.+-... .....+.. ....++|+++++||+|+.
T Consensus 57 ---~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (173)
T cd04155 57 ---GFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLA 128 (173)
T ss_pred ---CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCc
Confidence 67899999999999988888889999999999999863221 12222222 234578999999999987
No 198
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.16 E-value=1.1e-10 Score=115.12 Aligned_cols=112 Identities=17% Similarity=0.282 Sum_probs=73.1
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
+|++ +|..|+|||||+.+++. +... +. +..... +.... ...+ +++.
T Consensus 1 ki~v---vG~~~~GKtsli~~~~~--~~~~----~~--~~~t~~-------~~~~~--~~~~--------------~~~~ 46 (165)
T cd04146 1 KIAV---LGASGVGKSALVVRFLT--KRFI----GE--YDPNLE-------SLYSR--QVTI--------------DGEQ 46 (165)
T ss_pred CEEE---ECCCCCcHHHHHHHHHh--Cccc----cc--cCCChH-------HhceE--EEEE--------------CCEE
Confidence 4778 99999999999999963 2111 10 000000 11111 1111 2235
Q ss_pred eeEEEEcCCCccc-hHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHH-----hCCCceEEEEeCCCcc
Q 003378 90 YLINLIDSPGHVD-FSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL-----GERIRPVLTVNKMDRC 155 (824)
Q Consensus 90 ~~i~liDTPGh~d-f~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~-~~~-----~~~~p~ilviNKiD~~ 155 (824)
..+++|||||+.. +.......++.+|++|+|+|+.+....+....|. .+. ..++|+++|+||+|+.
T Consensus 47 ~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 47 VSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred EEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 6789999999985 4567788899999999999999875544333332 222 2378999999999986
No 199
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=2.2e-10 Score=111.57 Aligned_cols=120 Identities=16% Similarity=0.137 Sum_probs=90.8
Q ss_pred CCCceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccc
Q 003378 3 SYCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYR 82 (824)
Q Consensus 3 ~~~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~ 82 (824)
...+.-++|.+ +|..|+|||.|+-++ ..+ ..+++...-|-++....++...
T Consensus 4 ~~~dylFKiil---iGds~VGKtCL~~Rf--~~~--------------~f~e~~~sTIGVDf~~rt~e~~---------- 54 (205)
T KOG0084|consen 4 PEYDYLFKIIL---IGDSGVGKTCLLLRF--KDD--------------TFTESYISTIGVDFKIRTVELD---------- 54 (205)
T ss_pred cccceEEEEEE---ECCCCcChhhhhhhh--ccC--------------CcchhhcceeeeEEEEEEeeec----------
Confidence 33466789999 999999999999998 222 2223333335555555555543
Q ss_pred cccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHH---hCCCceEEEEeCCCcc
Q 003378 83 GERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL---GERIRPVLTVNKMDRC 155 (824)
Q Consensus 83 ~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~-~~~---~~~~p~ilviNKiD~~ 155 (824)
++..++++|||+|+.+|...+....|.|+|+|+|.|.+.--+......|. .+. ..++|.++|.||.|+.
T Consensus 55 ----gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~ 127 (205)
T KOG0084|consen 55 ----GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLT 127 (205)
T ss_pred ----ceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccH
Confidence 46779999999999999999999999999999999999865555555553 222 3478999999999997
No 200
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.16 E-value=1.7e-10 Score=118.15 Aligned_cols=114 Identities=26% Similarity=0.209 Sum_probs=72.6
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
.++|++ +|++|+|||||+++|+...-.... . .+.|+......+.+.
T Consensus 41 ~~~I~i---iG~~g~GKStLl~~l~~~~~~~~~--~--------------~~~t~~~~~~~~~~~--------------- 86 (204)
T cd01878 41 IPTVAL---VGYTNAGKSTLFNALTGADVYAED--Q--------------LFATLDPTTRRLRLP--------------- 86 (204)
T ss_pred CCeEEE---ECCCCCCHHHHHHHHhcchhccCC--c--------------cceeccceeEEEEec---------------
Confidence 468999 999999999999999543211110 0 012333333333343
Q ss_pred CceeEEEEcCCCccch-H-------HHHHHHHHhcCEEEEEEeCCCCcchhHHH----HHHHHHhCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDF-S-------SEVTAALRITDGALVVVDCIEGVCVQTET----VLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df-~-------~e~~~~l~~~D~avlvvd~~~gv~~~t~~----~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+.+.+.||||||+.+. . ..+...+..+|++++|+|+.++....... .++.+...++|+++|+||+|+.
T Consensus 87 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~ 166 (204)
T cd01878 87 DGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLL 166 (204)
T ss_pred CCceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccC
Confidence 1348999999998431 1 11223456899999999999875544332 2222223468999999999997
No 201
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.15 E-value=2.9e-10 Score=112.72 Aligned_cols=108 Identities=20% Similarity=0.109 Sum_probs=73.9
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
+|++ +|..++|||||+.+|... .... ...|+......+.+. +
T Consensus 1 ~vvl---vG~~~~GKTsl~~~l~~~--~~~~-----------------~~~T~~~~~~~~~~~----------------~ 42 (169)
T cd04158 1 RVVT---LGLDGAGKTTILFKLKQD--EFMQ-----------------PIPTIGFNVETVEYK----------------N 42 (169)
T ss_pred CEEE---ECCCCCCHHHHHHHHhcC--CCCC-----------------cCCcCceeEEEEEEC----------------C
Confidence 4677 999999999999999432 1100 011222222223332 7
Q ss_pred eeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcch-hHHHHHHHHHh----CCCceEEEEeCCCcc
Q 003378 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQALG----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 90 ~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~-~t~~~l~~~~~----~~~p~ilviNKiD~~ 155 (824)
..+++|||||+.+|.......++.+|++++|+|+++.-.. .....+..+.+ .+.|+++|+||+|+.
T Consensus 43 ~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 113 (169)
T cd04158 43 LKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVA 113 (169)
T ss_pred EEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcc
Confidence 8999999999999988888899999999999998764222 12222333332 247899999999986
No 202
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.15 E-value=2.6e-10 Score=112.84 Aligned_cols=112 Identities=21% Similarity=0.262 Sum_probs=76.6
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeec-eEEEEEeechhhhhccccccCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
++|++ +|..|+|||||++++.... .... .+. |+... ...+.+. +
T Consensus 2 ~ki~l---iG~~~~GKTsli~~~~~~~--~~~~-------~~~---------t~~~~~~~~~~~~--------------~ 46 (168)
T cd04177 2 YKIVV---LGAGGVGKSALTVQFVQNV--FIES-------YDP---------TIEDSYRKQVEID--------------G 46 (168)
T ss_pred eEEEE---ECCCCCCHHHHHHHHHhCC--CCcc-------cCC---------cchheEEEEEEEC--------------C
Confidence 67899 9999999999999995322 1110 000 11111 1122222 2
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-----HHHHhCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-----RQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-----~~~~~~~~p~ilviNKiD~~ 155 (824)
....+.+|||||+.+|.......++.+|++|+|+|..+.-..+...-| +.....++|+++++||+|+.
T Consensus 47 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~ 119 (168)
T cd04177 47 RQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLE 119 (168)
T ss_pred EEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcc
Confidence 357889999999999999999999999999999998875433333222 22234578999999999986
No 203
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.15 E-value=2.1e-10 Score=112.25 Aligned_cols=109 Identities=28% Similarity=0.205 Sum_probs=73.5
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
+|++ +|..|+|||||+++|....- .. . .-|+......+.+. ..
T Consensus 1 ~i~i---~G~~~~GKTsl~~~~~~~~~--~~----------~-------~~t~~~~~~~~~~~---------------~~ 43 (160)
T cd04156 1 QVLL---LGLDSAGKSTLLYKLKHAEL--VT----------T-------IPTVGFNVEMLQLE---------------KH 43 (160)
T ss_pred CEEE---EcCCCCCHHHHHHHHhcCCc--cc----------c-------cCccCcceEEEEeC---------------Cc
Confidence 4677 99999999999999953221 10 0 00111111122222 25
Q ss_pred eeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhH-HHHHHHHH----hCCCceEEEEeCCCcc
Q 003378 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQAL----GERIRPVLTVNKMDRC 155 (824)
Q Consensus 90 ~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t-~~~l~~~~----~~~~p~ilviNKiD~~ 155 (824)
+.++++||||+..|.......++.+|++|+|+|+.+...... ...+..+. ..++|+++|+||+|+.
T Consensus 44 ~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 114 (160)
T cd04156 44 LSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLP 114 (160)
T ss_pred eEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccc
Confidence 789999999999998888888999999999999987642211 12222222 2578999999999986
No 204
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.15 E-value=2e-10 Score=116.42 Aligned_cols=113 Identities=19% Similarity=0.126 Sum_probs=75.1
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceE--EEEEeechhhhhccccccC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGI--SLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~--~~~~~~~~~~~~~~~~~~~ 86 (824)
++|++ +|..++|||||+.++....-..... -.|+..... .+.+ +
T Consensus 1 ~Ki~v---vG~~~vGKTSli~~~~~~~~~~~~~-----------------~~t~~~~~~~~~~~~--------------~ 46 (191)
T cd04112 1 FKVML---LGDSGVGKTCLLVRFKDGAFLNGNF-----------------IATVGIDFRNKVVTV--------------D 46 (191)
T ss_pred CEEEE---ECCCCCCHHHHHHHHhcCCCCccCc-----------------CCcccceeEEEEEEE--------------C
Confidence 37888 9999999999999995332111100 011111111 1112 2
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHH---hCCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~---~~~~p~ilviNKiD~~ 155 (824)
+....++||||||+.+|.......++.+|++|+|+|+...........| ..+. ..++|+++|+||+|+.
T Consensus 47 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 119 (191)
T cd04112 47 GVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMS 119 (191)
T ss_pred CEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccch
Confidence 2357899999999999988888889999999999999875433222222 2332 2467999999999986
No 205
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.15 E-value=2.4e-10 Score=112.47 Aligned_cols=115 Identities=19% Similarity=0.196 Sum_probs=77.5
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
.++|++ +|..++|||||+++|+...-.... ...++.......+.+. +
T Consensus 3 ~~ki~v---vG~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~--------------~ 49 (165)
T cd01868 3 LFKIVL---IGDSGVGKSNLLSRFTRNEFNLDS----------------KSTIGVEFATRSIQID--------------G 49 (165)
T ss_pred ceEEEE---ECCCCCCHHHHHHHHhcCCCCCCC----------------CCccceEEEEEEEEEC--------------C
Confidence 478999 999999999999999532211000 0111222222223322 2
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHh---CCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~~---~~~p~ilviNKiD~~ 155 (824)
....+++|||||+..|.......++.+|++|+|+|+.+.-..+...-| ..+.+ .++|+++|+||.|+.
T Consensus 50 ~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~ 121 (165)
T cd01868 50 KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLR 121 (165)
T ss_pred EEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 346789999999999988888889999999999999865443333223 22222 357889999999986
No 206
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.14 E-value=2.3e-10 Score=112.94 Aligned_cols=114 Identities=15% Similarity=0.181 Sum_probs=75.4
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
++|++ +|..++|||||+++|+... .... +.+ .-|++.. ...+.. ++.
T Consensus 2 ~ki~i---~G~~~~GKSsli~~l~~~~--~~~~---------~~~---t~~~~~~--~~~~~~--------------~~~ 48 (165)
T cd01865 2 FKLLI---IGNSSVGKTSFLFRYADDS--FTSA---------FVS---TVGIDFK--VKTVFR--------------NDK 48 (165)
T ss_pred eEEEE---ECCCCCCHHHHHHHHhcCC--CCCC---------CCC---ceeeEEE--EEEEEE--------------CCE
Confidence 68899 9999999999999995321 1110 000 0011111 111111 223
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHh---CCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~~---~~~p~ilviNKiD~~ 155 (824)
...+.+|||||+.+|.......++.+|++++|+|..+.-..+...-| ..+.. ...|+++|+||+|+.
T Consensus 49 ~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 119 (165)
T cd01865 49 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDME 119 (165)
T ss_pred EEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccC
Confidence 57899999999999998888999999999999998865333322222 23322 357889999999986
No 207
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.14 E-value=3.2e-10 Score=112.91 Aligned_cols=113 Identities=19% Similarity=0.262 Sum_probs=78.9
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeece-EEEEEeechhhhhccccccC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~ 86 (824)
.++|++ +|..++|||||+.+++. +..... ...|+.... ..+.+ +
T Consensus 2 ~~ki~v---vG~~~vGKTsL~~~~~~--~~f~~~----------------~~~t~~~~~~~~~~~--------------~ 46 (172)
T cd04141 2 EYKIVM---LGAGGVGKSAVTMQFIS--HSFPDY----------------HDPTIEDAYKQQARI--------------D 46 (172)
T ss_pred ceEEEE---ECCCCCcHHHHHHHHHh--CCCCCC----------------cCCcccceEEEEEEE--------------C
Confidence 478999 99999999999999954 222110 001111111 11122 2
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHH----HhCCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQA----LGERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~----~~~~~p~ilviNKiD~~ 155 (824)
+....++||||||..+|.......++.+|++|+|+|..+....+...-| ..+ ...++|+++|.||+|+.
T Consensus 47 ~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~ 120 (172)
T cd04141 47 NEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLE 120 (172)
T ss_pred CEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhh
Confidence 3357899999999999998888999999999999999987666654422 222 23468999999999986
No 208
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.14 E-value=1.5e-10 Score=111.05 Aligned_cols=96 Identities=21% Similarity=0.175 Sum_probs=67.2
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
+|++ +|+.|+|||||+++|. +... ...-| ....|. .
T Consensus 2 kv~l---iG~~~vGKSsL~~~l~-----------~~~~---------~~~~t-----~~~~~~----------------~ 37 (142)
T TIGR02528 2 RIMF---IGSVGCGKTTLTQALQ-----------GEEI---------LYKKT-----QAVEYN----------------D 37 (142)
T ss_pred eEEE---ECCCCCCHHHHHHHHc-----------CCcc---------ccccc-----eeEEEc----------------C
Confidence 6888 9999999999999993 2100 00011 123342 2
Q ss_pred eeEEEEcCCCcc----chHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 90 YLINLIDSPGHV----DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 90 ~~i~liDTPGh~----df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
.+|||||+. .+...+..+++.+|++++|+|+.++.+.+...++.. .+.|+++|+||+|+.
T Consensus 38 ---~~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~ 101 (142)
T TIGR02528 38 ---GAIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLA 101 (142)
T ss_pred ---eeecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccC
Confidence 689999983 334444456889999999999999887776544332 235999999999986
No 209
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.14 E-value=3.1e-10 Score=115.77 Aligned_cols=116 Identities=18% Similarity=0.198 Sum_probs=78.3
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
..++|++ +|..|+|||||+++|+... ... . + ...++++.....+.+.
T Consensus 5 ~~~kivv---vG~~~vGKTsli~~l~~~~--~~~----~--~--------~~t~~~~~~~~~~~~~-------------- 51 (199)
T cd04110 5 HLFKLLI---IGDSGVGKSSLLLRFADNT--FSG----S--Y--------ITTIGVDFKIRTVEIN-------------- 51 (199)
T ss_pred ceeEEEE---ECCCCCCHHHHHHHHhcCC--CCC----C--c--------CccccceeEEEEEEEC--------------
Confidence 4689999 9999999999999995321 110 0 0 0001111112222222
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHH--hCCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL--GERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~--~~~~p~ilviNKiD~~ 155 (824)
+....++||||||+..|.......++.+|++++|+|+++.-..+...-| ..+. ....|+++|+||+|+.
T Consensus 52 ~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~ 123 (199)
T cd04110 52 GERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDP 123 (199)
T ss_pred CEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 2356789999999999998888999999999999999875444433333 2222 2357889999999986
No 210
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.14 E-value=2.5e-10 Score=112.16 Aligned_cols=117 Identities=15% Similarity=0.159 Sum_probs=76.7
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
++|++ +|..++|||||+.+|.......... .-.|+........+.. ..+.
T Consensus 1 ~ki~v---vG~~~~GKtsl~~~l~~~~~~~~~~----------------~~~t~~~~~~~~~~~~-----------~~~~ 50 (164)
T cd04101 1 LRCAV---VGDPAVGKTAFVQMFHSNGAVFPKN----------------YLMTTGCDFVVKEVPV-----------DTDN 50 (164)
T ss_pred CEEEE---ECCCCCCHHHHHHHHhcCCCCcCcc----------------CCCceEEEEEEEEEEe-----------CCCC
Confidence 47889 9999999999999996432211110 0012211111111110 0234
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHh--CCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG--ERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~~--~~~p~ilviNKiD~~ 155 (824)
...+.+|||||+..|.......++.+|++++|+|..+.-......-| ..+.. .++|+++|+||+|+.
T Consensus 51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 120 (164)
T cd04101 51 TVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLA 120 (164)
T ss_pred EEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 67899999999999988888999999999999998865333222223 33332 358999999999986
No 211
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.14 E-value=3e-10 Score=113.68 Aligned_cols=113 Identities=21% Similarity=0.234 Sum_probs=77.3
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
.+|++ +|+.|+|||||+++++...-.... .. . +.......+.+. +.
T Consensus 2 ~kv~l---~G~~g~GKTtl~~~~~~~~~~~~~--~~------t---------~~~~~~~~~~~~--------------~~ 47 (180)
T cd04137 2 RKIAV---LGSRSVGKSSLTVQFVEGHFVESY--YP------T---------IENTFSKIIRYK--------------GQ 47 (180)
T ss_pred eEEEE---ECCCCCCHHHHHHHHHhCCCcccc--Cc------c---------hhhhEEEEEEEC--------------CE
Confidence 57889 999999999999999642211000 00 0 000001112221 23
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHH-HHHHH----hCCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETV-LRQAL----GERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~-l~~~~----~~~~p~ilviNKiD~~ 155 (824)
++.+++|||||+.+|.......+..+|++++|+|..++...+.... |.... ..++|+|+++||+|+.
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 119 (180)
T cd04137 48 DYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH 119 (180)
T ss_pred EEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh
Confidence 5778999999999999888889999999999999998765544433 23332 2467999999999986
No 212
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.13 E-value=2.9e-10 Score=117.82 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=81.3
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +|..|+|||||+.+++... ... +...|+........+. .
T Consensus 11 ~~~~Ki~v---vG~~gvGKTsli~~~~~~~--f~~----------------~~~~tig~~~~~~~~~------------~ 57 (219)
T PLN03071 11 YPSFKLVI---VGDGGTGKTTFVKRHLTGE--FEK----------------KYEPTIGVEVHPLDFF------------T 57 (219)
T ss_pred CCceEEEE---ECcCCCCHHHHHHHHhhCC--CCC----------------ccCCccceeEEEEEEE------------E
Confidence 56789999 9999999999999985321 111 0011222222222222 1
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HH--hCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-AL--GERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~-~~--~~~~p~ilviNKiD~~ 155 (824)
++....+++|||||+.+|.......++.+|++|+|+|.+.....+...-|.. +. ..++|+++|.||+|+.
T Consensus 58 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 130 (219)
T PLN03071 58 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (219)
T ss_pred CCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhh
Confidence 2235799999999999998777778899999999999998765555444422 21 3578999999999986
No 213
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.13 E-value=4.5e-10 Score=112.96 Aligned_cols=112 Identities=20% Similarity=0.188 Sum_probs=76.5
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|..++|||||+.++.. +.... .. .|+......+.+.
T Consensus 15 ~~~~kv~l---vG~~~vGKTsli~~~~~--~~~~~----------~~-------~T~~~~~~~~~~~------------- 59 (182)
T PTZ00133 15 KKEVRILM---VGLDAAGKTTILYKLKL--GEVVT----------TI-------PTIGFNVETVEYK------------- 59 (182)
T ss_pred CCccEEEE---EcCCCCCHHHHHHHHhc--CCccc----------cC-------CccccceEEEEEC-------------
Confidence 45689999 99999999999999932 21110 00 1222111223332
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcch-hHHHHHHHHHh----CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQALG----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~-~t~~~l~~~~~----~~~p~ilviNKiD~~ 155 (824)
+..+++|||||+..|.......++.+|++|+|+|+.+--.. .....+..... .+.|++||+||.|+.
T Consensus 60 ---~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 131 (182)
T PTZ00133 60 ---NLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLP 131 (182)
T ss_pred ---CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCC
Confidence 68899999999999988888899999999999998752111 11223333322 357899999999987
No 214
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.13 E-value=3.4e-10 Score=110.99 Aligned_cols=112 Identities=22% Similarity=0.263 Sum_probs=74.7
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhcccee-eceEEEEEeechhhhhccccccCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIK-STGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~-~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
++|++ +|..|+|||||+++++... ....... |+. .....+.. ++
T Consensus 2 ~ki~i---~G~~~vGKTsl~~~~~~~~--~~~~~~~----------------t~~~~~~~~~~~--------------~~ 46 (163)
T cd04136 2 YKVVV---LGSGGVGKSALTVQFVQGI--FVEKYDP----------------TIEDSYRKQIEV--------------DG 46 (163)
T ss_pred eEEEE---ECCCCCCHHHHHHHHHhCC--CCcccCC----------------chhhhEEEEEEE--------------CC
Confidence 68899 9999999999999996322 1110000 110 00011112 22
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHHHH----hCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQAL----GERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~-~l~~~~----~~~~p~ilviNKiD~~ 155 (824)
....+.||||||+.+|.......++.+|++++|+|..+.-...... .+..+. ..++|+++++||+|+.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (163)
T cd04136 47 QQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLE 119 (163)
T ss_pred EEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 3567889999999999888888899999999999988643332222 222332 2468999999999986
No 215
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.13 E-value=8e-10 Score=109.27 Aligned_cols=113 Identities=17% Similarity=0.199 Sum_probs=84.6
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccc-cCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE-VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~-~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (824)
+....||. +|.+|+|||||+++|....+..... .. |.|..... |.+.
T Consensus 22 ~~~~EIaF---~GRSNVGKSSlIN~l~~~k~LArtSktP---------------GrTq~iNf--f~~~------------ 69 (200)
T COG0218 22 DDLPEIAF---AGRSNVGKSSLINALTNQKNLARTSKTP---------------GRTQLINF--FEVD------------ 69 (200)
T ss_pred CCCcEEEE---EccCcccHHHHHHHHhCCcceeecCCCC---------------CccceeEE--EEec------------
Confidence 44568999 9999999999999996544322111 13 44554432 3342
Q ss_pred cCCCceeEEEEcCCCc----------cchHHHHHHHHH---hcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeC
Q 003378 85 RQGNEYLINLIDSPGH----------VDFSSEVTAALR---ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNK 151 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh----------~df~~e~~~~l~---~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNK 151 (824)
-.+.|+|-||+ ..+...+..+++ ...+++++||+.+++...+.++++.+...++|+++++||
T Consensus 70 -----~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK 144 (200)
T COG0218 70 -----DELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTK 144 (200)
T ss_pred -----CcEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEc
Confidence 23889999996 234444555553 467999999999999999999999999999999999999
Q ss_pred CCcc
Q 003378 152 MDRC 155 (824)
Q Consensus 152 iD~~ 155 (824)
+|++
T Consensus 145 ~DKi 148 (200)
T COG0218 145 ADKL 148 (200)
T ss_pred cccC
Confidence 9998
No 216
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.12 E-value=2.8e-10 Score=125.67 Aligned_cols=113 Identities=30% Similarity=0.281 Sum_probs=75.2
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
..+|++ +|++|+|||||+++|.... .+..... +.|.+.....+.+.
T Consensus 189 ~~~Val---vG~~NvGKSSLln~L~~~~-~~v~~~~---------------~tT~d~~~~~i~~~--------------- 234 (351)
T TIGR03156 189 VPTVAL---VGYTNAGKSTLFNALTGAD-VYAADQL---------------FATLDPTTRRLDLP--------------- 234 (351)
T ss_pred CcEEEE---ECCCCCCHHHHHHHHhCCc-eeeccCC---------------ccccCCEEEEEEeC---------------
Confidence 378999 9999999999999995432 1111111 23444444444442
Q ss_pred CceeEEEEcCCCcc-c--------hHHHHHHHHHhcCEEEEEEeCCCCcchhHH----HHHHHHHhCCCceEEEEeCCCc
Q 003378 88 NEYLINLIDSPGHV-D--------FSSEVTAALRITDGALVVVDCIEGVCVQTE----TVLRQALGERIRPVLTVNKMDR 154 (824)
Q Consensus 88 ~~~~i~liDTPGh~-d--------f~~e~~~~l~~~D~avlvvd~~~gv~~~t~----~~l~~~~~~~~p~ilviNKiD~ 154 (824)
++..+.|+||||.. + |. .+...++.+|++|+|+|+++....... .+++.+...++|+++|+||+|+
T Consensus 235 ~~~~i~l~DT~G~~~~l~~~lie~f~-~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl 313 (351)
T TIGR03156 235 DGGEVLLTDTVGFIRDLPHELVAAFR-ATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDL 313 (351)
T ss_pred CCceEEEEecCcccccCCHHHHHHHH-HHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecC
Confidence 25689999999972 1 22 233457889999999999876544332 2333333347899999999998
Q ss_pred c
Q 003378 155 C 155 (824)
Q Consensus 155 ~ 155 (824)
.
T Consensus 314 ~ 314 (351)
T TIGR03156 314 L 314 (351)
T ss_pred C
Confidence 7
No 217
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.12 E-value=4.8e-10 Score=113.48 Aligned_cols=111 Identities=15% Similarity=0.223 Sum_probs=74.4
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeece-EEEEEeechhhhhccccccCCC
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
+|++ +|..++|||||+++|.. +........ |+.... ..... ++.
T Consensus 1 ki~i---vG~~~vGKTsli~~l~~--~~f~~~~~~----------------t~~~~~~~~~~~--------------~~~ 45 (190)
T cd04144 1 KLVV---LGDGGVGKTALTIQLCL--NHFVETYDP----------------TIEDSYRKQVVV--------------DGQ 45 (190)
T ss_pred CEEE---ECCCCCCHHHHHHHHHh--CCCCccCCC----------------chHhhEEEEEEE--------------CCE
Confidence 4778 99999999999999963 222110011 111000 11112 123
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHHHHh------CCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG------ERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~-~l~~~~~------~~~p~ilviNKiD~~ 155 (824)
...++||||||+.+|.......++.+|++|+|+|..+.-...... .+..+.. .++|+|+|.||+|+.
T Consensus 46 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~ 119 (190)
T cd04144 46 PCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119 (190)
T ss_pred EEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc
Confidence 467899999999999998889999999999999998754433322 2233321 467999999999986
No 218
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.11 E-value=7.4e-10 Score=123.76 Aligned_cols=112 Identities=20% Similarity=0.159 Sum_probs=74.5
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
.|++ +|.+|+|||||+++|....-.+.. .. +.|.......+.+. ..
T Consensus 161 dVal---VG~PNaGKSTLln~Lt~~k~~vs~-~p---------------~TT~~p~~Giv~~~---------------~~ 206 (390)
T PRK12298 161 DVGL---LGLPNAGKSTFIRAVSAAKPKVAD-YP---------------FTTLVPNLGVVRVD---------------DE 206 (390)
T ss_pred cEEE---EcCCCCCHHHHHHHHhCCcccccC-CC---------------CCccCcEEEEEEeC---------------CC
Confidence 6889 999999999999999532211111 01 23443333334443 23
Q ss_pred eeEEEEcCCCccc-------hHHHHHHHHHhcCEEEEEEeCCC----CcchhHHHHHHHHHh-----CCCceEEEEeCCC
Q 003378 90 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE----GVCVQTETVLRQALG-----ERIRPVLTVNKMD 153 (824)
Q Consensus 90 ~~i~liDTPGh~d-------f~~e~~~~l~~~D~avlvvd~~~----gv~~~t~~~l~~~~~-----~~~p~ilviNKiD 153 (824)
..|.|+||||..+ +...+.+.+..+|++++|||+.. ....+...+++.+.. .+.|.|+|+||+|
T Consensus 207 ~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiD 286 (390)
T PRK12298 207 RSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKID 286 (390)
T ss_pred cEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCc
Confidence 5699999999754 44566778899999999999872 122223344444444 3589999999999
Q ss_pred cc
Q 003378 154 RC 155 (824)
Q Consensus 154 ~~ 155 (824)
+.
T Consensus 287 l~ 288 (390)
T PRK12298 287 LL 288 (390)
T ss_pred cC
Confidence 86
No 219
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.11 E-value=4.6e-10 Score=110.23 Aligned_cols=112 Identities=22% Similarity=0.268 Sum_probs=75.4
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccce-eeceEEEEEeechhhhhccccccCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITI-KSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi-~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
++|++ +|..++|||||+.+++. +........ |+ ......+.. ++
T Consensus 2 ~ki~i---~G~~~vGKTsl~~~~~~--~~~~~~~~~----------------t~~~~~~~~~~~--------------~~ 46 (163)
T cd04176 2 YKVVV---LGSGGVGKSALTVQFVS--GTFIEKYDP----------------TIEDFYRKEIEV--------------DS 46 (163)
T ss_pred eEEEE---ECCCCCCHHHHHHHHHc--CCCCCCCCC----------------chhheEEEEEEE--------------CC
Confidence 68999 99999999999999853 322211000 11 000111111 22
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHh----CCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~~----~~~p~ilviNKiD~~ 155 (824)
....++||||||+..|.......++.+|++++|+|.++....+...-| ..+.+ .++|+++++||+|+.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~ 119 (163)
T cd04176 47 SPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE 119 (163)
T ss_pred EEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 356788999999999988888889999999999999875433322222 22222 478999999999986
No 220
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.10 E-value=4.9e-10 Score=112.07 Aligned_cols=126 Identities=19% Similarity=0.136 Sum_probs=79.0
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
..++|++ +|..++|||||+.++.... ....... .++++.....+.+..... ......
T Consensus 3 ~~~ki~i---vG~~~vGKTsli~~~~~~~--~~~~~~~--------------t~~~~~~~~~~~~~~~~~----~~~~~~ 59 (180)
T cd04127 3 YLIKFLA---LGDSGVGKTSFLYQYTDNK--FNPKFIT--------------TVGIDFREKRVVYNSSGP----GGTLGR 59 (180)
T ss_pred ceEEEEE---ECCCCCCHHHHHHHHhcCC--CCccCCC--------------ccceEEEEEEEEEcCccc----cccccC
Confidence 3589999 9999999999999994321 1110000 011111111222220000 000011
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHHh----CCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~-~~~~----~~~p~ilviNKiD~~ 155 (824)
+....+.||||||+..|.......++.+|++|+|+|+.+.-..+...-|. .+.. .+.|+++|.||+|+.
T Consensus 60 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 133 (180)
T cd04127 60 GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLE 133 (180)
T ss_pred CCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccch
Confidence 34578999999999999988899999999999999998754444433332 2222 367889999999986
No 221
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.10 E-value=5.3e-10 Score=115.53 Aligned_cols=109 Identities=17% Similarity=0.140 Sum_probs=76.8
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
++|++ +|..++|||||+.+++... ... . -.|+........+.
T Consensus 1 ~KIvi---vG~~~vGKTSLi~r~~~~~--f~~----------~-------~~Tig~~~~~~~~~---------------- 42 (220)
T cd04126 1 LKVVL---LGDMNVGKTSLLHRYMERR--FKD----------T-------VSTVGGAFYLKQWG---------------- 42 (220)
T ss_pred CEEEE---ECCCCCcHHHHHHHHhcCC--CCC----------C-------CCccceEEEEEEee----------------
Confidence 47888 9999999999999995321 110 0 01222222222333
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHHHH---hCCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQAL---GERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~-~l~~~~---~~~~p~ilviNKiD~~ 155 (824)
.+.++||||||+..|.......++.+|++|+|+|.++.-...... .|..+. ..++|+|||.||+|+.
T Consensus 43 ~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~ 113 (220)
T cd04126 43 PYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLT 113 (220)
T ss_pred EEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 678999999999999988888899999999999998754444332 233332 2457899999999986
No 222
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.10 E-value=4e-10 Score=114.88 Aligned_cols=114 Identities=18% Similarity=0.228 Sum_probs=72.2
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
++|++ +|..++|||||+++++... .... +.+ .++.......+.+. +.
T Consensus 1 ~kI~i---vG~~~vGKTsLi~~~~~~~--f~~~---------~~p-----t~~~~~~~~~i~~~--------------~~ 47 (198)
T cd04142 1 VRVAV---LGAPGVGKTAIVRQFLAQE--FPEE---------YIP-----TEHRRLYRPAVVLS--------------GR 47 (198)
T ss_pred CEEEE---ECCCCCcHHHHHHHHHcCC--CCcc---------cCC-----ccccccceeEEEEC--------------CE
Confidence 47889 9999999999999995422 1110 000 00011111112232 23
Q ss_pred ceeEEEEcCCCccchH----HH----HHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHH------hCCCceEEEEeCCC
Q 003378 89 EYLINLIDSPGHVDFS----SE----VTAALRITDGALVVVDCIEGVCVQTETVL-RQAL------GERIRPVLTVNKMD 153 (824)
Q Consensus 89 ~~~i~liDTPGh~df~----~e----~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~------~~~~p~ilviNKiD 153 (824)
.+.++||||||+.+|. .+ ...+++.+|++|+|+|+++..+.+....| ..+. ..++|+++|.||+|
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~D 127 (198)
T cd04142 48 VYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRD 127 (198)
T ss_pred EEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcc
Confidence 5788999999987652 12 44567899999999999976544433333 2232 24689999999999
Q ss_pred cc
Q 003378 154 RC 155 (824)
Q Consensus 154 ~~ 155 (824)
+.
T Consensus 128 l~ 129 (198)
T cd04142 128 QQ 129 (198)
T ss_pred cc
Confidence 96
No 223
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.09 E-value=5.3e-10 Score=110.57 Aligned_cols=128 Identities=21% Similarity=0.287 Sum_probs=75.9
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
.|.+ +|+.|+|||+|...|.+.. .. ..+ .++.. ...+.. .+..+
T Consensus 5 ~vlL---~Gps~SGKTaLf~~L~~~~--~~----~T~-------------tS~e~-n~~~~~-------------~~~~~ 48 (181)
T PF09439_consen 5 TVLL---VGPSGSGKTALFSQLVNGK--TV----PTV-------------TSMEN-NIAYNV-------------NNSKG 48 (181)
T ss_dssp EEEE---E-STTSSHHHHHHHHHHSS---------B----------------SSE-EEECCG-------------SSTCG
T ss_pred eEEE---EcCCCCCHHHHHHHHhcCC--cC----Cee-------------ccccC-CceEEe-------------ecCCC
Confidence 5667 9999999999999996541 11 100 11111 111111 12235
Q ss_pred eeEEEEcCCCccchHHHHHHH---HHhcCEEEEEEeCCCCcchhHHHH---H----HHHH--hCCCceEEEEeCCCcchh
Q 003378 90 YLINLIDSPGHVDFSSEVTAA---LRITDGALVVVDCIEGVCVQTETV---L----RQAL--GERIRPVLTVNKMDRCFL 157 (824)
Q Consensus 90 ~~i~liDTPGh~df~~e~~~~---l~~~D~avlvvd~~~gv~~~t~~~---l----~~~~--~~~~p~ilviNKiD~~~~ 157 (824)
..+.+||+|||..+....... +..+-++|+|||++. ...+-+.+ | .... ..++|++|+.||.|+.
T Consensus 49 ~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~-- 125 (181)
T PF09439_consen 49 KKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLF-- 125 (181)
T ss_dssp TCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTST--
T ss_pred CEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccc--
Confidence 678999999999988877776 889999999999974 22211222 1 1112 3566788999999998
Q ss_pred cccC-CHHHHHHHHHHHHHHhh
Q 003378 158 ELQV-DGEEAYQTFQKVIENAN 178 (824)
Q Consensus 158 ~~~~-~~~~~~~~~~~~~~~~~ 178 (824)
.+ ++..+...+++-++.++
T Consensus 126 --~A~~~~~Ik~~LE~Ei~~lr 145 (181)
T PF09439_consen 126 --TAKPPKKIKKLLEKEIDKLR 145 (181)
T ss_dssp --T---HHHHHHHHHHHHHHHH
T ss_pred --ccCCHHHHHHHHHHHHHHHH
Confidence 66 45566666666666554
No 224
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.09 E-value=7.8e-10 Score=111.41 Aligned_cols=113 Identities=12% Similarity=0.042 Sum_probs=75.8
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEE-EEEeechhhhhccccccCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGIS-LYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~-~~~~~~~~~~~~~~~~~~~ 87 (824)
++|++ +|..++|||||+++|+... .... . ..|+...... .... ++
T Consensus 1 ~ki~v---vG~~~vGKTsli~~l~~~~--~~~~--~--------------~~t~~~~~~~~i~~~-------------~~ 46 (187)
T cd04132 1 KKIVV---VGDGGCGKTCLLIVYSQGK--FPEE--Y--------------VPTVFENYVTNIQGP-------------NG 46 (187)
T ss_pred CeEEE---ECCCCCCHHHHHHHHHhCc--CCCC--C--------------CCeeeeeeEEEEEec-------------CC
Confidence 47889 9999999999999995322 1110 0 0111111111 1111 13
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHHHH---hCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQAL---GERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~-~l~~~~---~~~~p~ilviNKiD~~ 155 (824)
....+.||||||+.+|.......++.+|++|+|+|..+....+... .|.... ..++|+|+|.||.|+.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 118 (187)
T cd04132 47 KIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLR 118 (187)
T ss_pred cEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhh
Confidence 4568899999999999887777889999999999998755444332 343222 2478999999999986
No 225
>PLN03110 Rab GTPase; Provisional
Probab=99.09 E-value=6.8e-10 Score=114.83 Aligned_cols=117 Identities=18% Similarity=0.176 Sum_probs=80.0
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +|+.++|||||+.+|+...-.... ...+.++.....+.+
T Consensus 10 ~~~~Ki~i---vG~~~vGKStLi~~l~~~~~~~~~----------------~~t~g~~~~~~~v~~-------------- 56 (216)
T PLN03110 10 DYLFKIVL---IGDSGVGKSNILSRFTRNEFCLES----------------KSTIGVEFATRTLQV-------------- 56 (216)
T ss_pred CceeEEEE---ECCCCCCHHHHHHHHhcCCCCCCC----------------CCceeEEEEEEEEEE--------------
Confidence 35589999 999999999999999532211100 001111211122222
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHH---hCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~---~~~~p~ilviNKiD~~ 155 (824)
++....++||||||+..|.......++.+|++|+|+|..+....+...-| ..+. ..++|++++.||+|+.
T Consensus 57 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 130 (216)
T PLN03110 57 EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLN 130 (216)
T ss_pred CCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcc
Confidence 22357899999999999999888999999999999999875444443333 3333 2478999999999985
No 226
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.09 E-value=5.3e-10 Score=108.94 Aligned_cols=112 Identities=24% Similarity=0.298 Sum_probs=74.8
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
+|++ +|+.|+|||||+++|+... .... ..+. +-......+.+ ++..
T Consensus 1 ki~i---~G~~~~GKTsli~~l~~~~--~~~~---------~~~~------~~~~~~~~~~~--------------~~~~ 46 (160)
T cd00876 1 KVVV---LGAGGVGKSAITIQFVKGT--FVEE---------YDPT------IEDSYRKTIVV--------------DGET 46 (160)
T ss_pred CEEE---ECCCCCCHHHHHHHHHhCC--CCcC---------cCCC------hhHeEEEEEEE--------------CCEE
Confidence 4788 9999999999999996432 1110 0000 00111111222 1235
Q ss_pred eeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchh-HHHHHHHHHh----CCCceEEEEeCCCcc
Q 003378 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQALG----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 90 ~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~-t~~~l~~~~~----~~~p~ilviNKiD~~ 155 (824)
+.+++|||||+.++.......++.+|++++|+|....-... ....+..... .++|+++|+||+|+.
T Consensus 47 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 117 (160)
T cd00876 47 YTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLE 117 (160)
T ss_pred EEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccc
Confidence 78999999999999988899999999999999987643221 2233333322 478999999999987
No 227
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.09 E-value=4e-10 Score=107.43 Aligned_cols=109 Identities=23% Similarity=0.234 Sum_probs=77.7
Q ss_pred ccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCceeEEEEc
Q 003378 17 ANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLID 96 (824)
Q Consensus 17 ~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liD 96 (824)
+|+.++|||||+++|......... +..|. .......+. ....+..++++|
T Consensus 2 iG~~~~GKStl~~~l~~~~~~~~~-----------------~~~t~-~~~~~~~~~------------~~~~~~~~~l~D 51 (157)
T cd00882 2 VGDSGVGKTSLLNRLLGGEFVPEE-----------------YETTI-IDFYSKTIE------------VDGKKVKLQIWD 51 (157)
T ss_pred CCcCCCcHHHHHHHHHhCCcCCcc-----------------cccch-hheeeEEEE------------ECCEEEEEEEEe
Confidence 899999999999999644331000 11111 222222221 012367899999
Q ss_pred CCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-----HHHHhCCCceEEEEeCCCcc
Q 003378 97 SPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-----RQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 97 TPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-----~~~~~~~~p~ilviNKiD~~ 155 (824)
|||+.++.......++.+|++++|+|+..+........| ......++|+++++||+|+.
T Consensus 52 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~ 115 (157)
T cd00882 52 TAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLP 115 (157)
T ss_pred cCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccc
Confidence 999999988888899999999999999987766655543 34456788999999999997
No 228
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.08 E-value=7.8e-10 Score=109.88 Aligned_cols=113 Identities=19% Similarity=0.202 Sum_probs=75.3
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
+|++ +|..++|||||+.+++... .... ..-|+........+. .++..
T Consensus 2 ki~i---vG~~~vGKTsli~~~~~~~--f~~~----------------~~~t~~~~~~~~~~~------------~~~~~ 48 (170)
T cd04108 2 KVIV---VGDLSVGKTCLINRFCKDV--FDKN----------------YKATIGVDFEMERFE------------ILGVP 48 (170)
T ss_pred EEEE---ECCCCCCHHHHHHHHhcCC--CCCC----------------CCCceeeEEEEEEEE------------ECCEE
Confidence 5788 9999999999999996421 1110 011232222211121 12345
Q ss_pred eeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHHhC----CCceEEEEeCCCcc
Q 003378 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALGE----RIRPVLTVNKMDRC 155 (824)
Q Consensus 90 ~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~-~~~~~----~~p~ilviNKiD~~ 155 (824)
..++||||||+.+|.......++.+|++|+|+|+.+........-|. .+.+. ..|+++|.||+|+.
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~ 119 (170)
T cd04108 49 FSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLS 119 (170)
T ss_pred EEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcC
Confidence 78999999999999988888899999999999998743333333333 33332 24578999999985
No 229
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.08 E-value=4.9e-10 Score=111.26 Aligned_cols=108 Identities=23% Similarity=0.213 Sum_probs=68.2
Q ss_pred ccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCceeEEEEc
Q 003378 17 ANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLID 96 (824)
Q Consensus 17 ~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liD 96 (824)
+|+.|+|||||+++|....-.+.. ..+.|+......+.+. .++.++|||
T Consensus 2 iG~~~~GKStll~~l~~~~~~~~~----------------~~~~t~~~~~~~~~~~---------------~~~~~~i~D 50 (176)
T cd01881 2 VGLPNVGKSTLLNALTNAKPKVAN----------------YPFTTLEPNLGVVEVP---------------DGARIQVAD 50 (176)
T ss_pred CCCCCCcHHHHHHHHhcCCccccC----------------CCceeecCcceEEEcC---------------CCCeEEEEe
Confidence 899999999999999543211110 0123333332333332 167899999
Q ss_pred CCCccc-------hHHHHHHHHHhcCEEEEEEeCCCCc------chhHHHHH-HHHH----------hCCCceEEEEeCC
Q 003378 97 SPGHVD-------FSSEVTAALRITDGALVVVDCIEGV------CVQTETVL-RQAL----------GERIRPVLTVNKM 152 (824)
Q Consensus 97 TPGh~d-------f~~e~~~~l~~~D~avlvvd~~~gv------~~~t~~~l-~~~~----------~~~~p~ilviNKi 152 (824)
|||+.+ +.......++.+|++++|+|+.... .......| ..+. ..++|+++|+||+
T Consensus 51 tpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~ 130 (176)
T cd01881 51 IPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKI 130 (176)
T ss_pred ccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEch
Confidence 999843 2234556788899999999998762 22222222 2221 1478999999999
Q ss_pred Ccc
Q 003378 153 DRC 155 (824)
Q Consensus 153 D~~ 155 (824)
|+.
T Consensus 131 Dl~ 133 (176)
T cd01881 131 DLD 133 (176)
T ss_pred hcC
Confidence 997
No 230
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.07 E-value=7.9e-10 Score=112.04 Aligned_cols=115 Identities=15% Similarity=0.154 Sum_probs=75.1
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
++|++ +|..++|||||+++|+...-.... + .-|+........+. .++.
T Consensus 1 ~ki~v---vG~~~vGKSsLi~~~~~~~~~~~~----------~-------~~t~~~~~~~~~~~------------~~~~ 48 (193)
T cd04118 1 VKVVM---LGKESVGKTSLVERYVHHRFLVGP----------Y-------QNTIGAAFVAKRMV------------VGER 48 (193)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhCCcCCcC----------c-------ccceeeEEEEEEEE------------ECCE
Confidence 47889 999999999999999642211100 0 01222211111111 1234
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHh--CCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG--ERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~~--~~~p~ilviNKiD~~ 155 (824)
...+++|||||+.+|.......++.+|++|+|+|..+....+....| ..+.. .++|+++|+||+|+.
T Consensus 49 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 118 (193)
T cd04118 49 VVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLI 118 (193)
T ss_pred EEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccc
Confidence 56788999999998877777778899999999999875443332223 33332 368999999999985
No 231
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.07 E-value=7.6e-10 Score=110.51 Aligned_cols=113 Identities=18% Similarity=0.174 Sum_probs=77.4
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceE-EEEEeechhhhhccccccC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGI-SLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~-~~~~~~~~~~~~~~~~~~~ 86 (824)
+++|++ +|..++|||||+.++++. ..... .-.|+..... .+.. +
T Consensus 1 ~~ki~v---vG~~~vGKTsl~~~~~~~--~f~~~----------------~~pt~~~~~~~~~~~--------------~ 45 (175)
T cd01874 1 TIKCVV---VGDGAVGKTCLLISYTTN--KFPSE----------------YVPTVFDNYAVTVMI--------------G 45 (175)
T ss_pred CeEEEE---ECCCCCCHHHHHHHHHcC--CCCCC----------------CCCceeeeeEEEEEE--------------C
Confidence 478999 999999999999999542 11110 0012211111 1222 2
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHH-HHH--hCCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLR-QAL--GERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~-~~~--~~~~p~ilviNKiD~~ 155 (824)
+..+.++||||||+.+|.......++.+|++|+|+|..+.-..+.. ..|. .+. ..++|+|+|.||+|+.
T Consensus 46 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~ 118 (175)
T cd01874 46 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 118 (175)
T ss_pred CEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhh
Confidence 2357899999999999987777788999999999999876554443 2343 222 2368999999999986
No 232
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.06 E-value=3.9e-10 Score=112.01 Aligned_cols=112 Identities=19% Similarity=0.263 Sum_probs=74.9
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeec-eEEEEEeechhhhhccccccCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
++|++ +|+.++|||||+.+++... ....... |+... ...+.+ ++
T Consensus 1 ~ki~i---~G~~~~GKTsl~~~~~~~~--~~~~~~~----------------t~~~~~~~~~~~--------------~~ 45 (174)
T cd04135 1 LKCVV---VGDGAVGKTCLLMSYANDA--FPEEYVP----------------TVFDHYAVSVTV--------------GG 45 (174)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhCC--CCCCCCC----------------ceeeeeEEEEEE--------------CC
Confidence 47889 9999999999999995432 1110000 11100 111112 22
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHH-HHH--hCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLR-QAL--GERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~-~l~-~~~--~~~~p~ilviNKiD~~ 155 (824)
..+.+++|||||+.+|.......++.+|++|+|+|..+.-..+... .|. .+. ..++|+++++||+|+.
T Consensus 46 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~ 117 (174)
T cd04135 46 KQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLR 117 (174)
T ss_pred EEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhh
Confidence 3577899999999999877777888999999999998764433331 232 222 4578999999999986
No 233
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.06 E-value=1.9e-09 Score=109.75 Aligned_cols=113 Identities=19% Similarity=0.215 Sum_probs=80.5
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
++|++ +|++|+|||||+|+|+......... ...+.|.........|.
T Consensus 1 ~~i~l---vG~~g~GKSsl~N~ilg~~~~~~~~--------------~~~~~T~~~~~~~~~~~---------------- 47 (196)
T cd01852 1 LRLVL---VGKTGAGKSATGNTILGREVFESKL--------------SASSVTKTCQKESAVWD---------------- 47 (196)
T ss_pred CEEEE---ECCCCCCHHHHHHHhhCCCcccccc--------------CCCCcccccceeeEEEC----------------
Confidence 47888 9999999999999997554322110 12345666555555564
Q ss_pred ceeEEEEcCCCccchH-------HHHHHHH----HhcCEEEEEEeCCCCcchhHHHHHHHHHhC-C----CceEEEEeCC
Q 003378 89 EYLINLIDSPGHVDFS-------SEVTAAL----RITDGALVVVDCIEGVCVQTETVLRQALGE-R----IRPVLTVNKM 152 (824)
Q Consensus 89 ~~~i~liDTPGh~df~-------~e~~~~l----~~~D~avlvvd~~~gv~~~t~~~l~~~~~~-~----~p~ilviNKi 152 (824)
+..+++|||||..++. .++.+.+ ..+|++|+|+++.. .......+++.+.+. + .++|+++|+.
T Consensus 48 ~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~ 126 (196)
T cd01852 48 GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRG 126 (196)
T ss_pred CeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECc
Confidence 7899999999987652 2333333 35789999999887 777777777776543 2 4778999999
Q ss_pred Ccc
Q 003378 153 DRC 155 (824)
Q Consensus 153 D~~ 155 (824)
|..
T Consensus 127 d~l 129 (196)
T cd01852 127 DDL 129 (196)
T ss_pred ccc
Confidence 987
No 234
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.06 E-value=7.1e-10 Score=114.61 Aligned_cols=113 Identities=12% Similarity=0.060 Sum_probs=75.0
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeec--eEEEEEeechhhhhccccccC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST--GISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~--~~~~~~~~~~~~~~~~~~~~~ 86 (824)
++|++ +|..++|||||+++|+... ... . ...|+... ...+.+. +
T Consensus 1 ~Ki~i---vG~~~vGKSsLi~~l~~~~--~~~---------~-------~~~T~~~d~~~~~i~~~-------------~ 46 (215)
T cd04109 1 FKIVV---LGDGAVGKTSLCRRFAKEG--FGK---------S-------YKQTIGLDFFSKRVTLP-------------G 46 (215)
T ss_pred CEEEE---ECcCCCCHHHHHHHHhcCC--CCC---------C-------CCCceeEEEEEEEEEeC-------------C
Confidence 47888 9999999999999995321 110 0 01122221 1222221 1
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHh------CCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG------ERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~~------~~~p~ilviNKiD~~ 155 (824)
+....++||||||+..|.......++.+|++|+|+|..+.-......-| ..+.+ .+.|+++|.||+|+.
T Consensus 47 ~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 47 NLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred CCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 2357899999999999988888889999999999998865433333223 22322 235678999999986
No 235
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.06 E-value=1e-09 Score=110.93 Aligned_cols=116 Identities=16% Similarity=0.196 Sum_probs=80.2
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
..++|++ +|..++|||||+.++.. +..... -...++.+.....+.. +
T Consensus 5 ~~~Kivv---iG~~~vGKTsll~~~~~--~~~~~~--------------~~~t~~~~~~~~~i~~--------------~ 51 (189)
T cd04121 5 YLLKFLL---VGDSDVGKGEILASLQD--GSTESP--------------YGYNMGIDYKTTTILL--------------D 51 (189)
T ss_pred ceeEEEE---ECCCCCCHHHHHHHHHc--CCCCCC--------------CCCcceeEEEEEEEEE--------------C
Confidence 4689999 99999999999999953 211110 0001122221122222 2
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHH--hCCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL--GERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~--~~~~p~ilviNKiD~~ 155 (824)
+....++||||||+.+|.......++.+|++|+|+|.+..-+.+...-| .++. ..++|+|||.||+|+.
T Consensus 52 ~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~ 123 (189)
T cd04121 52 GRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLA 123 (189)
T ss_pred CEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccch
Confidence 3467899999999999998888888999999999999876554444433 3332 2478999999999986
No 236
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.05 E-value=5.2e-10 Score=110.57 Aligned_cols=113 Identities=15% Similarity=0.143 Sum_probs=73.7
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
++|++ +|..|+|||||+++|+...- ...... ...........+ .+.
T Consensus 1 iki~i---~G~~~~GKSsli~~l~~~~~--~~~~~~---------------~~~~~~~~~~~~--------------~~~ 46 (171)
T cd00157 1 IKIVV---VGDGAVGKTCLLISYTTGKF--PTEYVP---------------TVFDNYSATVTV--------------DGK 46 (171)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhCCC--CCCCCC---------------ceeeeeEEEEEE--------------CCE
Confidence 57888 99999999999999954321 000000 000111111111 234
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHH-HHHH--hCCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQAL--GERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l-~~~~--~~~~p~ilviNKiD~~ 155 (824)
.+.+.+|||||+.+|.......++.+|++++|+|+.+....+.. ..| .... ..++|+++|+||+|+.
T Consensus 47 ~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 117 (171)
T cd00157 47 QVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLR 117 (171)
T ss_pred EEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhh
Confidence 67899999999998876666677899999999999874433322 222 2222 2358999999999987
No 237
>PLN03108 Rab family protein; Provisional
Probab=99.04 E-value=1.7e-09 Score=111.38 Aligned_cols=116 Identities=19% Similarity=0.139 Sum_probs=77.8
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
..++|++ +|+.++|||||+++|+...-.... + ..+..+.....+.+.
T Consensus 5 ~~~kivi---vG~~gvGKStLi~~l~~~~~~~~~---------~-------~ti~~~~~~~~i~~~-------------- 51 (210)
T PLN03108 5 YLFKYII---IGDTGVGKSCLLLQFTDKRFQPVH---------D-------LTIGVEFGARMITID-------------- 51 (210)
T ss_pred cceEEEE---ECCCCCCHHHHHHHHHhCCCCCCC---------C-------CCccceEEEEEEEEC--------------
Confidence 4589999 999999999999999542211100 0 001111111112222
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHH---hCCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL---GERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~-~~~---~~~~p~ilviNKiD~~ 155 (824)
+....+++|||||+.+|.......++.+|++|+|+|.+..-..+...-|. .+. ..++|++++.||+|+.
T Consensus 52 ~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~ 124 (210)
T PLN03108 52 NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124 (210)
T ss_pred CEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 23567899999999999888888899999999999998754444333332 222 2468899999999986
No 238
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.03 E-value=2e-09 Score=108.23 Aligned_cols=112 Identities=19% Similarity=0.212 Sum_probs=73.9
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeece--EEEEEeechhhhhccccccC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG--ISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~--~~~~~~~~~~~~~~~~~~~~ 86 (824)
++|++ +|..++|||||+.+++... .... + --|+.... ..+.. +
T Consensus 1 ~Ki~v---lG~~~vGKTsLi~~~~~~~--f~~~---------~-------~~T~g~~~~~~~i~~--------------~ 45 (182)
T cd04128 1 LKIGL---LGDAQIGKTSLMVKYVEGE--FDED---------Y-------IQTLGVNFMEKTISI--------------R 45 (182)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhCC--CCCC---------C-------CCccceEEEEEEEEE--------------C
Confidence 47888 9999999999999995421 1110 0 01221111 11222 2
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHh--CCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG--ERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~~--~~~p~ilviNKiD~~ 155 (824)
+....+++|||+|+..|.......++.+|++++|+|.++-...+...-| ..+.+ ...++|+|.||+|+.
T Consensus 46 ~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~ 117 (182)
T cd04128 46 GTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLF 117 (182)
T ss_pred CEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 2357899999999999988888889999999999998875444333223 33332 222347899999985
No 239
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.03 E-value=1.4e-09 Score=112.06 Aligned_cols=116 Identities=21% Similarity=0.226 Sum_probs=75.4
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
.++|++ +|..++|||||+++|+... ... .. + ..++++.....+.+. ++
T Consensus 2 ~~KIvv---vG~~~vGKTsLi~~l~~~~--~~~--~~-----~-------~ti~~d~~~~~i~~~-------------~~ 49 (211)
T cd04111 2 QFRLIV---IGDSTVGKSSLLKRFTEGR--FAE--VS-----D-------PTVGVDFFSRLIEIE-------------PG 49 (211)
T ss_pred ceEEEE---ECCCCCCHHHHHHHHHcCC--CCC--CC-----C-------ceeceEEEEEEEEEC-------------CC
Confidence 378999 9999999999999996422 111 00 0 011111111122221 23
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHHHHh----CCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~-~l~~~~~----~~~p~ilviNKiD~~ 155 (824)
....+++|||||+..|.......++.+|++|+|+|..+.-...... .+..+.+ ...|++++.||+|+.
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~ 122 (211)
T cd04111 50 VRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLE 122 (211)
T ss_pred CEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccc
Confidence 3578999999999999888888899999999999998743322222 2222222 345678899999986
No 240
>PRK11058 GTPase HflX; Provisional
Probab=99.02 E-value=1.2e-09 Score=123.41 Aligned_cols=112 Identities=27% Similarity=0.218 Sum_probs=75.0
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
..|++ +|.+|+|||||+++|....-.+ .| .-+.|++.....+.+. .
T Consensus 198 p~Val---VG~~NaGKSSLlN~Lt~~~~~v----------~~------~~~tTld~~~~~i~l~---------------~ 243 (426)
T PRK11058 198 PTVSL---VGYTNAGKSTLFNRITEARVYA----------AD------QLFATLDPTLRRIDVA---------------D 243 (426)
T ss_pred CEEEE---ECCCCCCHHHHHHHHhCCceee----------cc------CCCCCcCCceEEEEeC---------------C
Confidence 46888 9999999999999994321111 11 1134555544455553 1
Q ss_pred ceeEEEEcCCCccc---------hHHHHHHHHHhcCEEEEEEeCCCCcchhHH----HHHHHHHhCCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVD---------FSSEVTAALRITDGALVVVDCIEGVCVQTE----TVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~d---------f~~e~~~~l~~~D~avlvvd~~~gv~~~t~----~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
...+.|+||||... |. .+...++.+|++|+|+|+++....... .++..+...++|+++|+||+|+.
T Consensus 244 ~~~~~l~DTaG~~r~lp~~lve~f~-~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~ 322 (426)
T PRK11058 244 VGETVLADTVGFIRHLPHDLVAAFK-ATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDML 322 (426)
T ss_pred CCeEEEEecCcccccCCHHHHHHHH-HHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCC
Confidence 33788999999843 32 234556889999999999886443332 33444444578999999999986
No 241
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.01 E-value=2.3e-09 Score=108.68 Aligned_cols=114 Identities=15% Similarity=0.104 Sum_probs=78.9
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
+++|++ +|..++|||||+.+++.. ..... .-.|+.... ...+. .++
T Consensus 3 ~~ki~~---vG~~~vGKTsli~~~~~~--~f~~~----------------~~~t~~~~~-~~~~~------------~~~ 48 (191)
T cd01875 3 SIKCVV---VGDGAVGKTCLLICYTTN--AFPKE----------------YIPTVFDNY-SAQTA------------VDG 48 (191)
T ss_pred cEEEEE---ECCCCCCHHHHHHHHHhC--CCCcC----------------CCCceEeee-EEEEE------------ECC
Confidence 478999 999999999999999542 11110 011222111 11111 123
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHH-HH--hCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQ-AL--GERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~-~l~~-~~--~~~~p~ilviNKiD~~ 155 (824)
+...++||||||+.+|.......++.+|++|+|+|..+-.+.+... .|.. +. ..++|++||.||.|+.
T Consensus 49 ~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~ 120 (191)
T cd01875 49 RTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLR 120 (191)
T ss_pred EEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhh
Confidence 4678999999999999988888889999999999998765544443 3432 22 2478999999999986
No 242
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.01 E-value=1.6e-09 Score=109.38 Aligned_cols=114 Identities=20% Similarity=0.263 Sum_probs=75.4
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
++|++ +|..++|||||+.+|+. +..... +.+ ..|.+.. ...+.. ++.
T Consensus 1 ~ki~v---~G~~~vGKSsli~~~~~--~~~~~~---------~~~---t~~~~~~--~~~~~~--------------~~~ 47 (188)
T cd04125 1 FKVVI---IGDYGVGKSSLLKRFTE--DEFSES---------TKS---TIGVDFK--IKTVYI--------------ENK 47 (188)
T ss_pred CEEEE---ECCCCCCHHHHHHHHhc--CCCCCC---------CCC---ceeeEEE--EEEEEE--------------CCE
Confidence 47888 99999999999999952 211110 000 0011111 112222 123
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHH---hCCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~---~~~~p~ilviNKiD~~ 155 (824)
...+.+|||||+.+|.......++.+|++|+|+|..+.-.......| ..+. ..++|++++.||.|+.
T Consensus 48 ~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~ 118 (188)
T cd04125 48 IIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLV 118 (188)
T ss_pred EEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCc
Confidence 57889999999999998889999999999999999875443333333 2222 2357889999999986
No 243
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.01 E-value=4.4e-09 Score=112.60 Aligned_cols=124 Identities=19% Similarity=0.268 Sum_probs=77.5
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
.++|++ +|+.|+|||||+++|+...-. .. .+. .+...++..+.+++......+.. ++
T Consensus 4 ~f~I~v---vG~sg~GKSTliN~L~~~~~~-~~--~~~---~~~~~~~~~~T~~i~~~~~~i~~--------------~g 60 (276)
T cd01850 4 QFNIMV---VGESGLGKSTFINTLFNTKLI-PS--DYP---PDPAEEHIDKTVEIKSSKAEIEE--------------NG 60 (276)
T ss_pred EEEEEE---EcCCCCCHHHHHHHHHcCCCc-cc--cCC---CCccccccCCceEEEEEEEEEEE--------------CC
Confidence 478889 999999999999999543211 11 010 00011111222223332223322 22
Q ss_pred CceeEEEEcCCCccchHH---------------------HHHHHHH-------hcCEEEEEEeCC-CCcchhHHHHHHHH
Q 003378 88 NEYLINLIDSPGHVDFSS---------------------EVTAALR-------ITDGALVVVDCI-EGVCVQTETVLRQA 138 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~---------------------e~~~~l~-------~~D~avlvvd~~-~gv~~~t~~~l~~~ 138 (824)
....+++|||||..|+.. +.....| .+|++++++++. .++......+++.+
T Consensus 61 ~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l 140 (276)
T cd01850 61 VKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRL 140 (276)
T ss_pred EEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 346899999999766532 1111222 368899999987 47877878888877
Q ss_pred HhCCCceEEEEeCCCcc
Q 003378 139 LGERIRPVLTVNKMDRC 155 (824)
Q Consensus 139 ~~~~~p~ilviNKiD~~ 155 (824)
.. ++|+|+|+||+|+.
T Consensus 141 ~~-~v~vi~VinK~D~l 156 (276)
T cd01850 141 SK-RVNIIPVIAKADTL 156 (276)
T ss_pred hc-cCCEEEEEECCCcC
Confidence 64 89999999999986
No 244
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.01 E-value=2.5e-09 Score=106.15 Aligned_cols=115 Identities=17% Similarity=0.066 Sum_probs=76.9
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcc-cccCCceeecCChhhHhHhccceeece--EEEEEeechhhhhccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIA-QEVAGDVRMTDTRQDEAERGITIKSTG--ISLYYEMTDAALKSYR 82 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~-~~~~g~~~~~D~~~~E~~rgiTi~~~~--~~~~~~~~~~~~~~~~ 82 (824)
.++++|++ +|..|+|||||+.+++. +... .... -|+.... ..+.+.
T Consensus 2 ~~~~kv~~---vG~~~vGKTsli~~~~~--~~f~~~~~~----------------~T~~~~~~~~~~~~~---------- 50 (169)
T cd01892 2 RNVFLCFV---LGAKGSGKSALLRAFLG--RSFSLNAYS----------------PTIKPRYAVNTVEVY---------- 50 (169)
T ss_pred CeEEEEEE---ECCCCCcHHHHHHHHhC--CCCCcccCC----------------CccCcceEEEEEEEC----------
Confidence 46799999 99999999999999953 2221 1000 1111111 112222
Q ss_pred cccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHH-hCCCceEEEEeCCCcc
Q 003378 83 GERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL-GERIRPVLTVNKMDRC 155 (824)
Q Consensus 83 ~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~~~~-~~~~p~ilviNKiD~~ 155 (824)
+....++++||+|...|.......++.+|++|+|+|+.+.-..... .+++... ..++|+++|+||+|+.
T Consensus 51 ----~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 121 (169)
T cd01892 51 ----GQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLD 121 (169)
T ss_pred ----CeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccc
Confidence 2346788999999999877777778999999999999775332221 2333332 2368999999999986
No 245
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=8e-11 Score=126.38 Aligned_cols=128 Identities=29% Similarity=0.366 Sum_probs=102.4
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccC------------Cc---eeecCChhhHhHhccceeeceEEEE
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVA------------GD---VRMTDTRQDEAERGITIKSTGISLY 70 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~------------g~---~~~~D~~~~E~~rgiTi~~~~~~~~ 70 (824)
...+++++ +||+++||||+.. +..|.++.+.. |. .+++|....|++||++|+.+...+.
T Consensus 5 ~~~~ni~~---i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~ 78 (391)
T KOG0052|consen 5 KIHINIVV---IGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE 78 (391)
T ss_pred ccccceEE---EEeeeeeeeEEEe---eecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeeccc
Confidence 35689999 9999999999888 55565554411 21 4689999999999999776655544
Q ss_pred EeechhhhhccccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCC-------cchhHHHHHHHHHhCCC
Q 003378 71 YEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQALGERI 143 (824)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~g-------v~~~t~~~l~~~~~~~~ 143 (824)
. ..+.+++||.|||.||..++..+...+|.|+++|.+.-| ...||+++.-.+...++
T Consensus 79 t----------------~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv 142 (391)
T KOG0052|consen 79 T----------------SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 142 (391)
T ss_pred c----------------eeEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccc
Confidence 3 378999999999999999999999999999999988322 46789988888878876
Q ss_pred c-eEEEEeCCCcc
Q 003378 144 R-PVLTVNKMDRC 155 (824)
Q Consensus 144 p-~ilviNKiD~~ 155 (824)
. .++-+||||-.
T Consensus 143 ~qliv~v~k~D~~ 155 (391)
T KOG0052|consen 143 KQLIVGVNKMDST 155 (391)
T ss_pred eeeeEEeeccccc
Confidence 4 66889999976
No 246
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.01 E-value=3e-09 Score=116.53 Aligned_cols=113 Identities=20% Similarity=0.172 Sum_probs=72.2
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
..|++ +|.+++|||||+++|....-.+. ++ ...|.......+.+. .
T Consensus 158 adV~l---vG~pnaGKSTLl~~lt~~~~~va----------~y------~fTT~~p~ig~v~~~---------------~ 203 (329)
T TIGR02729 158 ADVGL---VGLPNAGKSTLISAVSAAKPKIA----------DY------PFTTLVPNLGVVRVD---------------D 203 (329)
T ss_pred ccEEE---EcCCCCCHHHHHHHHhcCCcccc----------CC------CCCccCCEEEEEEeC---------------C
Confidence 36888 99999999999999943221111 11 012333333333443 1
Q ss_pred ceeEEEEcCCCccc-------hHHHHHHHHHhcCEEEEEEeCCCC---cchhHHHHH-HHHHh-----CCCceEEEEeCC
Q 003378 89 EYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEG---VCVQTETVL-RQALG-----ERIRPVLTVNKM 152 (824)
Q Consensus 89 ~~~i~liDTPGh~d-------f~~e~~~~l~~~D~avlvvd~~~g---v~~~t~~~l-~~~~~-----~~~p~ilviNKi 152 (824)
...+.|+||||+.+ +.....+.+..+|++|+|+|+... ...+....| +.+.. .+.|+++|+||+
T Consensus 204 ~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~ 283 (329)
T TIGR02729 204 GRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKI 283 (329)
T ss_pred ceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCc
Confidence 37899999999853 334556667789999999998864 122222222 22322 367999999999
Q ss_pred Ccc
Q 003378 153 DRC 155 (824)
Q Consensus 153 D~~ 155 (824)
|+.
T Consensus 284 DL~ 286 (329)
T TIGR02729 284 DLL 286 (329)
T ss_pred cCC
Confidence 987
No 247
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.00 E-value=7.1e-10 Score=102.91 Aligned_cols=113 Identities=21% Similarity=0.240 Sum_probs=70.9
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
+|.+ +|+.|+|||||+++|+...... ....+...+.++........ ...
T Consensus 1 kI~V---~G~~g~GKTsLi~~l~~~~~~~------------~~~~~~~~~~~~~~~~~~~~----------------~~~ 49 (119)
T PF08477_consen 1 KIVV---LGDSGVGKTSLIRRLCGGEFPD------------NSVPEETSEITIGVDVIVVD----------------GDR 49 (119)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHHSS--------------------SSTTSCEEEEEEEET----------------TEE
T ss_pred CEEE---ECcCCCCHHHHHHHHhcCCCcc------------cccccccCCCcEEEEEEEec----------------CCc
Confidence 5778 9999999999999996544320 00001111233332222221 124
Q ss_pred eeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhH-HHH---HHHHH--hCCCceEEEEeCCC
Q 003378 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETV---LRQAL--GERIRPVLTVNKMD 153 (824)
Q Consensus 90 ~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t-~~~---l~~~~--~~~~p~ilviNKiD 153 (824)
..+.++|++|+..|.......+..+|++++|+|..+.-..+- ..+ +.... ..++|+|+|.||.|
T Consensus 50 ~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 50 QSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred eEEEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 568999999998887766666999999999999987543322 222 22222 24689999999998
No 248
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.00 E-value=1.8e-09 Score=107.85 Aligned_cols=113 Identities=16% Similarity=0.121 Sum_probs=78.2
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
++|++ +|+.++|||+|+.+++. +..... .-.|+.... ..... .++.
T Consensus 2 ~kivv---~G~~~vGKTsli~~~~~--~~f~~~----------------~~~Ti~~~~-~~~~~------------~~~~ 47 (176)
T cd04133 2 IKCVT---VGDGAVGKTCMLICYTS--NKFPTD----------------YIPTVFDNF-SANVS------------VDGN 47 (176)
T ss_pred eEEEE---ECCCCCcHHHHHHHHhc--CCCCCC----------------CCCcceeee-EEEEE------------ECCE
Confidence 68899 99999999999999953 222110 011222111 11111 1234
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHH-HHHH--hCCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQAL--GERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l-~~~~--~~~~p~ilviNKiD~~ 155 (824)
..+++||||+|+.+|.......++.+|++|+|+|.++--..+.. ..| ..+. ..++|+|||.||+|+.
T Consensus 48 ~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~ 118 (176)
T cd04133 48 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLR 118 (176)
T ss_pred EEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhc
Confidence 68899999999999998888899999999999999876555443 233 3332 2478999999999986
No 249
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.00 E-value=2.1e-09 Score=107.30 Aligned_cols=112 Identities=23% Similarity=0.267 Sum_probs=82.3
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|..|||||||+.+|. .+.+.. ..-|+......+.+.
T Consensus 12 ~~~~~ili---lGl~~sGKTtll~~l~--~~~~~~-----------------~~pT~g~~~~~i~~~------------- 56 (175)
T PF00025_consen 12 KKEIKILI---LGLDGSGKTTLLNRLK--NGEISE-----------------TIPTIGFNIEEIKYK------------- 56 (175)
T ss_dssp TSEEEEEE---EESTTSSHHHHHHHHH--SSSEEE-----------------EEEESSEEEEEEEET-------------
T ss_pred CcEEEEEE---ECCCccchHHHHHHhh--hccccc-----------------cCcccccccceeeeC-------------
Confidence 67899999 9999999999999993 232211 012333444455554
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCc-chhHHHHHHHHHh----CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQTETVLRQALG----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv-~~~t~~~l~~~~~----~~~p~ilviNKiD~~ 155 (824)
++.++++|.+|+..|.......+..+|++|+|||+.+-- .......+..+.. .++|+++++||.|++
T Consensus 57 ---~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~ 128 (175)
T PF00025_consen 57 ---GYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLP 128 (175)
T ss_dssp ---TEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTST
T ss_pred ---cEEEEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEecccccc
Confidence 789999999999988887888889999999999998642 2333344444332 468999999999998
No 250
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.99 E-value=2e-09 Score=107.36 Aligned_cols=112 Identities=16% Similarity=0.130 Sum_probs=75.9
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeece-EEEEEeechhhhhccccccCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~ 87 (824)
++|++ +|..++|||||+.+++. +..... ...|+.... ..+.. ++
T Consensus 2 ~ki~i---iG~~~vGKSsli~~~~~--~~f~~~----------------~~~t~~~~~~~~~~~--------------~~ 46 (174)
T cd01871 2 IKCVV---VGDGAVGKTCLLISYTT--NAFPGE----------------YIPTVFDNYSANVMV--------------DG 46 (174)
T ss_pred eEEEE---ECCCCCCHHHHHHHHhc--CCCCCc----------------CCCcceeeeEEEEEE--------------CC
Confidence 68899 99999999999999953 221110 001111110 11111 23
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHH-HH--hCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQ-AL--GERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~~-~~--~~~~p~ilviNKiD~~ 155 (824)
+...++||||||+.+|.......++.+|++|+|+|.++--+.+.. ..|.. +. ..++|+|+|.||+|+.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~ 118 (174)
T cd01871 47 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 118 (174)
T ss_pred EEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhc
Confidence 457899999999999988778888999999999999875444443 23422 22 2368999999999986
No 251
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.99 E-value=1.3e-09 Score=108.54 Aligned_cols=113 Identities=16% Similarity=0.191 Sum_probs=74.9
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
++|++ +|..++|||||+.+++... ....... .+.+.-...+.. ++.
T Consensus 1 ~k~~i---~G~~~~GKtsl~~~~~~~~--~~~~~~~---------------t~~~~~~~~~~~--------------~~~ 46 (173)
T cd04130 1 LKCVL---VGDGAVGKTSLIVSYTTNG--YPTEYVP---------------TAFDNFSVVVLV--------------DGK 46 (173)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHhCC--CCCCCCC---------------ceeeeeeEEEEE--------------CCE
Confidence 47888 9999999999999885421 1110000 000110111222 223
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhH--HHHHHHHHh--CCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT--ETVLRQALG--ERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t--~~~l~~~~~--~~~p~ilviNKiD~~ 155 (824)
...+.+|||||+.+|.......++.+|++|+|+|..+--..+. ...+..+.. .++|++++.||+|+.
T Consensus 47 ~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 117 (173)
T cd04130 47 PVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLR 117 (173)
T ss_pred EEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhc
Confidence 5688999999999988777778899999999999987544433 223334433 468999999999986
No 252
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.99 E-value=3.7e-09 Score=109.22 Aligned_cols=117 Identities=17% Similarity=0.166 Sum_probs=81.2
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +|+.|+|||||+.+++. |..... ...|+........+. .
T Consensus 7 ~~~~kv~l---iG~~g~GKTtLi~~~~~--~~~~~~----------------~~~t~~~~~~~~~~~------------~ 53 (215)
T PTZ00132 7 VPEFKLIL---VGDGGVGKTTFVKRHLT--GEFEKK----------------YIPTLGVEVHPLKFY------------T 53 (215)
T ss_pred CCCceEEE---ECCCCCCHHHHHHHHHh--CCCCCC----------------CCCccceEEEEEEEE------------E
Confidence 45689999 99999999999988753 222110 011222222222222 1
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHH---HhCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA---LGERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~---~~~~~p~ilviNKiD~~ 155 (824)
+++...+++|||||+.+|........+.+|++++|+|.++....++...|..- ...++|++++.||+|+.
T Consensus 54 ~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 54 NCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVK 126 (215)
T ss_pred CCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 23468999999999999987777778899999999999987766655444321 13578888999999986
No 253
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.99 E-value=3.9e-09 Score=105.72 Aligned_cols=112 Identities=13% Similarity=0.115 Sum_probs=76.8
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeece-EEEEEeechhhhhccccccCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~ 87 (824)
++|++ +|..++|||||+.+++... ... ++ -.|+.... ..+.. ++
T Consensus 2 ~Kiv~---vG~~~vGKTsli~~~~~~~--f~~---------~~-------~~t~~~~~~~~~~~--------------~~ 46 (178)
T cd04131 2 CKIVV---VGDVQCGKTALLQVFAKDC--YPE---------TY-------VPTVFENYTASFEI--------------DE 46 (178)
T ss_pred eEEEE---ECCCCCCHHHHHHHHHhCc--CCC---------Cc-------CCceEEEEEEEEEE--------------CC
Confidence 57899 9999999999999995321 111 00 01221111 11111 23
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhH-HHHHH-HHH--hCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLR-QAL--GERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t-~~~l~-~~~--~~~~p~ilviNKiD~~ 155 (824)
+...++||||||+..|.......++.+|++|+|+|.++--+.+. ..-|. .+. ..+.|+|+|.||+|+.
T Consensus 47 ~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~ 118 (178)
T cd04131 47 QRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLR 118 (178)
T ss_pred EEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhh
Confidence 46789999999999998877888899999999999987655544 23343 232 2467899999999985
No 254
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.98 E-value=3.5e-09 Score=105.19 Aligned_cols=68 Identities=15% Similarity=0.101 Sum_probs=51.4
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHH-HHHH--hCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQAL--GERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l-~~~~--~~~~p~ilviNKiD~~ 155 (824)
..+.+.+|||||+.+|.......++.+|++|+|+|....-..+.. ..| ..+. ..++|+|+|+||+|+.
T Consensus 44 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 115 (174)
T smart00174 44 KPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLR 115 (174)
T ss_pred EEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhh
Confidence 356799999999999987777788999999999998865333322 123 2232 2478999999999986
No 255
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.98 E-value=2.6e-09 Score=110.56 Aligned_cols=112 Identities=15% Similarity=0.127 Sum_probs=77.5
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeece-EEEEEeechhhhhccccccCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~ 87 (824)
++|++ +|..++|||||+.++.... ... ++ --|+.... ..+.. ++
T Consensus 2 ~KIvv---vGd~~vGKTsLi~~~~~~~--f~~---------~y-------~pTi~~~~~~~~~~--------------~~ 46 (222)
T cd04173 2 CKIVV---VGDAECGKTALLQVFAKDA--YPG---------SY-------VPTVFENYTASFEI--------------DK 46 (222)
T ss_pred eEEEE---ECCCCCCHHHHHHHHHcCC--CCC---------cc-------CCccccceEEEEEE--------------CC
Confidence 68899 9999999999999995321 111 00 01121111 11222 23
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHH---hCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL---GERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~~~~---~~~~p~ilviNKiD~~ 155 (824)
+...++||||+|+..|......+++.+|++|+|+|..+.-..+.. ..|.... ..++|+|||.||+|+.
T Consensus 47 ~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~ 118 (222)
T cd04173 47 RRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMR 118 (222)
T ss_pred EEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccc
Confidence 467899999999999988888889999999999999876444433 3443222 2468999999999986
No 256
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.98 E-value=2.7e-09 Score=112.41 Aligned_cols=112 Identities=18% Similarity=0.248 Sum_probs=74.8
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhcccee-eceEEEEEeechhhhhccccccCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIK-STGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~-~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
++|++ +|..++|||||+++++. +....... .|+. .....+.. ++
T Consensus 1 ~KVvv---lG~~gvGKTSLi~r~~~--~~f~~~y~----------------pTi~d~~~k~~~i--------------~~ 45 (247)
T cd04143 1 YRMVV---LGASKVGKTAIVSRFLG--GRFEEQYT----------------PTIEDFHRKLYSI--------------RG 45 (247)
T ss_pred CEEEE---ECcCCCCHHHHHHHHHc--CCCCCCCC----------------CChhHhEEEEEEE--------------CC
Confidence 36888 99999999999999953 21111000 1111 11111112 23
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHHHHh------------CCCceEEEEeCCCc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG------------ERIRPVLTVNKMDR 154 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~-~l~~~~~------------~~~p~ilviNKiD~ 154 (824)
..+.++||||||+.+|......+++.+|++|+|+|..+....+... ++..+.. .++|+|+|+||+|+
T Consensus 46 ~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl 125 (247)
T cd04143 46 EVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADR 125 (247)
T ss_pred EEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccc
Confidence 4678999999999999877777788999999999998754433322 2233321 36899999999998
Q ss_pred c
Q 003378 155 C 155 (824)
Q Consensus 155 ~ 155 (824)
.
T Consensus 126 ~ 126 (247)
T cd04143 126 D 126 (247)
T ss_pred h
Confidence 6
No 257
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.98 E-value=2.9e-09 Score=107.06 Aligned_cols=115 Identities=12% Similarity=0.111 Sum_probs=79.2
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeece-EEEEEeechhhhhccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~ 84 (824)
...++|++ +|..++|||||+.+++... .... ...|+.... ..+..
T Consensus 3 ~~~~Kivv---vGd~~vGKTsli~~~~~~~--f~~~----------------~~pT~~~~~~~~~~~------------- 48 (182)
T cd04172 3 NVKCKIVV---VGDSQCGKTALLHVFAKDC--FPEN----------------YVPTVFENYTASFEI------------- 48 (182)
T ss_pred cceEEEEE---ECCCCCCHHHHHHHHHhCC--CCCc----------------cCCceeeeeEEEEEE-------------
Confidence 34688999 9999999999999995422 1110 011221111 11111
Q ss_pred cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHH-HHHh--CCCceEEEEeCCCcc
Q 003378 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLR-QALG--ERIRPVLTVNKMDRC 155 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~-~~~~--~~~p~ilviNKiD~~ 155 (824)
+++...+.||||+|...|.......++.+|++|+|+|.++..+.+.. ..|. .+.+ .+.|+|||.||+|+.
T Consensus 49 -~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 122 (182)
T cd04172 49 -DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 122 (182)
T ss_pred -CCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhh
Confidence 23467899999999999988888888999999999999876555543 3442 3322 367899999999985
No 258
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.98 E-value=3.1e-09 Score=108.38 Aligned_cols=117 Identities=18% Similarity=0.240 Sum_probs=79.0
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeece--EEEEEeechhhhhccccccC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG--ISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~--~~~~~~~~~~~~~~~~~~~~ 86 (824)
++|++ +|..++|||||+.+++... .... ...|+.... ..+.+.. ...+
T Consensus 1 vKIvl---vGd~gVGKTSLi~~~~~~~--f~~~----------------~~~Tig~~~~~k~~~~~~---------~~~~ 50 (202)
T cd04102 1 VRVLV---VGDSGVGKSSLVHLICKNQ--VLGR----------------PSWTVGCSVDVKHHTYKE---------GTPE 50 (202)
T ss_pred CEEEE---ECCCCCCHHHHHHHHHcCC--CCCC----------------CCcceeeeEEEEEEEEcC---------CCCC
Confidence 47888 9999999999999995321 1110 012222111 1122210 0012
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHHh----------------------CCC
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG----------------------ERI 143 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~-~~~~----------------------~~~ 143 (824)
++.+.++||||+|+.+|.......++.+|++|+|+|.+..-......-|. .+.. .++
T Consensus 51 ~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (202)
T cd04102 51 EKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQI 130 (202)
T ss_pred CcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCc
Confidence 34678999999999999888888899999999999999876555544442 2222 368
Q ss_pred ceEEEEeCCCcc
Q 003378 144 RPVLTVNKMDRC 155 (824)
Q Consensus 144 p~ilviNKiD~~ 155 (824)
|+|||.||+|+.
T Consensus 131 PiilVGnK~Dl~ 142 (202)
T cd04102 131 PLLVIGTKLDQI 142 (202)
T ss_pred eEEEEEECccch
Confidence 999999999986
No 259
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.97 E-value=1.6e-09 Score=127.45 Aligned_cols=104 Identities=25% Similarity=0.261 Sum_probs=74.2
Q ss_pred cCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCceeEEEEcC
Q 003378 18 NSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDS 97 (824)
Q Consensus 18 G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDT 97 (824)
|.+|+|||||+++|....- . .+ + ..|+|++.....+.++ ++.++++||
T Consensus 1 G~pNvGKSSL~N~Ltg~~~---~--v~-----n------~pG~Tv~~~~~~i~~~----------------~~~i~lvDt 48 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ---T--VG-----N------WPGVTVEKKEGKLGFQ----------------GEDIEIVDL 48 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC---e--ec-----C------CCCeEEEEEEEEEEEC----------------CeEEEEEEC
Confidence 7899999999999932211 0 11 1 2477887776666664 678999999
Q ss_pred CCccchHHH-----HHH-H--HHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 98 PGHVDFSSE-----VTA-A--LRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 98 PGh~df~~e-----~~~-~--l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
||+.+|... +.+ . ...+|++++|+|+++. ........++.+.++|+++|+||+|+.
T Consensus 49 PG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~ 112 (591)
T TIGR00437 49 PGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEA 112 (591)
T ss_pred CCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHH
Confidence 999887542 222 2 2368999999999873 223344556677899999999999986
No 260
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.97 E-value=3.8e-09 Score=115.81 Aligned_cols=112 Identities=22% Similarity=0.165 Sum_probs=74.9
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
.|++ +|.+++|||||+++|....-.+ .++ .+.|+....-.+.+. .+
T Consensus 160 dVgl---VG~PNaGKSTLln~ls~a~~~v----------a~y------pfTT~~p~~G~v~~~---------------~~ 205 (335)
T PRK12299 160 DVGL---VGLPNAGKSTLISAVSAAKPKI----------ADY------PFTTLHPNLGVVRVD---------------DY 205 (335)
T ss_pred CEEE---EcCCCCCHHHHHHHHHcCCCcc----------CCC------CCceeCceEEEEEeC---------------CC
Confidence 6889 9999999999999994321111 111 123444444444453 25
Q ss_pred eeEEEEcCCCccc-------hHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHh-----CCCceEEEEeCCCcc
Q 003378 90 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG-----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 90 ~~i~liDTPGh~d-------f~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~~-----~~~p~ilviNKiD~~ 155 (824)
..+.++||||..+ +.....+.+..+|++|+|+|+.+.-..+....| ..+.. .++|+++|+||+|+.
T Consensus 206 ~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~ 284 (335)
T PRK12299 206 KSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLL 284 (335)
T ss_pred cEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccC
Confidence 6799999999753 445566677789999999999864333333333 33322 367999999999987
No 261
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=9.9e-09 Score=94.67 Aligned_cols=135 Identities=20% Similarity=0.251 Sum_probs=93.2
Q ss_pred CCCCCceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhc
Q 003378 1 MSSYCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS 80 (824)
Q Consensus 1 ~~~~~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~ 80 (824)
|..|. --++|.+ +|+.|+|||.|+.++ ..|..... .| -||.....--..+
T Consensus 1 medyk-flfkivl---vgnagvgktclvrrf--tqglfppg-qg---------------atigvdfmiktve-------- 50 (213)
T KOG0095|consen 1 MEDYK-FLFKIVL---VGNAGVGKTCLVRRF--TQGLFPPG-QG---------------ATIGVDFMIKTVE-------- 50 (213)
T ss_pred Ccccc-eeEEEEE---EccCCcCcchhhhhh--hccCCCCC-CC---------------ceeeeeEEEEEEE--------
Confidence 44454 3478999 999999999999998 66666543 22 2333332211111
Q ss_pred cccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHH---hCCCceEEEEeCCCcch
Q 003378 81 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRCF 156 (824)
Q Consensus 81 ~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~---~~~~p~ilviNKiD~~~ 156 (824)
.++...++.+|||+|++.|..-+.+..|-+++.|+|.|.+.-.......-| +.+. ..++--|+|.||+|+.
T Consensus 51 ----v~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~- 125 (213)
T KOG0095|consen 51 ----VNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLA- 125 (213)
T ss_pred ----ECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchh-
Confidence 245578899999999999999999999999999999999876665554333 3333 3456678999999986
Q ss_pred hcccCCHHHHHHHHHHHHH
Q 003378 157 LELQVDGEEAYQTFQKVIE 175 (824)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~ 175 (824)
|..++-+++.+-+.
T Consensus 126 -----drrevp~qigeefs 139 (213)
T KOG0095|consen 126 -----DRREVPQQIGEEFS 139 (213)
T ss_pred -----hhhhhhHHHHHHHH
Confidence 43344444444333
No 262
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.95 E-value=5.8e-09 Score=108.52 Aligned_cols=115 Identities=15% Similarity=0.105 Sum_probs=78.6
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
..++|++ +|..++|||+|+.+++.. ..... ...|+..... .... .+
T Consensus 12 ~~~KIvv---vGd~~VGKTsLi~r~~~~--~F~~~----------------y~pTi~~~~~-~~i~------------~~ 57 (232)
T cd04174 12 MRCKLVL---VGDVQCGKTAMLQVLAKD--CYPET----------------YVPTVFENYT-AGLE------------TE 57 (232)
T ss_pred eeEEEEE---ECCCCCcHHHHHHHHhcC--CCCCC----------------cCCceeeeeE-EEEE------------EC
Confidence 4578999 999999999999998532 11110 0012211111 1111 12
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhH-HHHH-HHHH--hCCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVL-RQAL--GERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t-~~~l-~~~~--~~~~p~ilviNKiD~~ 155 (824)
+....++||||||..+|.......++.+|++|+|+|.+.--..+. ...| ..+. ..+.|+|||.||+|+.
T Consensus 58 ~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 130 (232)
T cd04174 58 EQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLR 130 (232)
T ss_pred CEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 346789999999999998888888999999999999987665553 2334 3333 2367899999999985
No 263
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=98.95 E-value=1.4e-09 Score=101.78 Aligned_cols=118 Identities=19% Similarity=0.198 Sum_probs=84.9
Q ss_pred CceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccc
Q 003378 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 5 ~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (824)
-.++++|.+ +|..|+|||+|+-++.... .+. +...-|.++...-.+.
T Consensus 8 ~~~t~KiLl---IGeSGVGKSSLllrFv~~~--fd~--------------~~~~tIGvDFkvk~m~-------------- 54 (209)
T KOG0080|consen 8 YDTTFKILL---IGESGVGKSSLLLRFVSNT--FDD--------------LHPTTIGVDFKVKVMQ-------------- 54 (209)
T ss_pred cceeEEEEE---EccCCccHHHHHHHHHhcc--cCc--------------cCCceeeeeEEEEEEE--------------
Confidence 367899999 9999999999998884322 211 1111122222222222
Q ss_pred cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-----HHhCCCceEEEEeCCCcc
Q 003378 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-----ALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~-----~~~~~~p~ilviNKiD~~ 155 (824)
..++..++.||||+|++.|..-+.+..|.|-|+|+|.|.+.-.......+|-. +...++..++|.||+|+.
T Consensus 55 vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDke 130 (209)
T KOG0080|consen 55 VDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKE 130 (209)
T ss_pred EcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccch
Confidence 24568899999999999999999999999999999999987665555566643 223455567999999987
No 264
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.95 E-value=4.1e-09 Score=99.79 Aligned_cols=60 Identities=23% Similarity=0.195 Sum_probs=48.2
Q ss_pred EEEcCCC----ccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 93 NLIDSPG----HVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 93 ~liDTPG----h~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
++||||| +..|..........||.+++|.|+++..+.-.- ..+...+.|+|-||||+|+.
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP---~fa~~f~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPP---GFASMFNKPVIGVITKIDLP 102 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCc---hhhcccCCCEEEEEECccCc
Confidence 5699999 456778888888999999999999986544433 23445678999999999997
No 265
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.94 E-value=7e-09 Score=101.97 Aligned_cols=112 Identities=18% Similarity=0.151 Sum_probs=74.8
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeec--eEEEEEeechhhhhccccccC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST--GISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~--~~~~~~~~~~~~~~~~~~~~~ 86 (824)
++|++ +|..++|||||+.+++. +..... . ..|+... ...+.. +
T Consensus 1 ~ki~v---vG~~~~GKTsli~~~~~--~~~~~~-~---------------~~t~~~~~~~~~~~~--------------~ 45 (161)
T cd04117 1 FRLLL---IGDSGVGKTCLLCRFTD--NEFHSS-H---------------ISTIGVDFKMKTIEV--------------D 45 (161)
T ss_pred CEEEE---ECcCCCCHHHHHHHHhc--CCCCCC-C---------------CCceeeEEEEEEEEE--------------C
Confidence 36888 99999999999999952 222110 0 1122211 112222 2
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHH---hCCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~---~~~~p~ilviNKiD~~ 155 (824)
+....+.+|||||..+|........+.+|++++|+|..+--..+...-| ..+. ..++|+++|.||+|+.
T Consensus 46 ~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~ 118 (161)
T cd04117 46 GIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEE 118 (161)
T ss_pred CEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 2356889999999999988888899999999999998864333332222 2221 2367899999999986
No 266
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.93 E-value=4.3e-09 Score=106.48 Aligned_cols=112 Identities=16% Similarity=0.131 Sum_probs=73.7
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
+|++ +|..|+|||||+.+++. +..... + ..|+...... ... .++..
T Consensus 2 kivi---vG~~~vGKTsli~~~~~--~~~~~~---------~-------~~t~~~~~~~-~i~------------~~~~~ 47 (189)
T cd04134 2 KVVV---LGDGACGKTSLLNVFTR--GYFPQV---------Y-------EPTVFENYVH-DIF------------VDGLH 47 (189)
T ss_pred EEEE---ECCCCCCHHHHHHHHhc--CCCCCc---------c-------CCcceeeeEE-EEE------------ECCEE
Confidence 6788 99999999999999953 211110 0 0111111111 000 12235
Q ss_pred eeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HH-HHHHh--CCCceEEEEeCCCcc
Q 003378 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALG--ERIRPVLTVNKMDRC 155 (824)
Q Consensus 90 ~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~-~l-~~~~~--~~~p~ilviNKiD~~ 155 (824)
..++||||||+.+|..-....++.+|++|+|+|..+-...+... .| ..+.. .+.|+++|.||+|+.
T Consensus 48 ~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~ 117 (189)
T cd04134 48 IELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLR 117 (189)
T ss_pred EEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 78999999999998776667788999999999988755444332 23 33332 378999999999997
No 267
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.93 E-value=1.4e-08 Score=106.80 Aligned_cols=116 Identities=24% Similarity=0.229 Sum_probs=73.8
Q ss_pred CCceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhcccee-eceEEEEEeechhhhhccc
Q 003378 4 YCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIK-STGISLYYEMTDAALKSYR 82 (824)
Q Consensus 4 ~~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~-~~~~~~~~~~~~~~~~~~~ 82 (824)
.+.....|.| .|++|+|||||+.++....-.+. ..-+|.+ ...-++.+.
T Consensus 164 Idp~~pTivV---aG~PNVGKSSlv~~lT~AkpEvA-----------------~YPFTTK~i~vGhfe~~---------- 213 (346)
T COG1084 164 IDPDLPTIVV---AGYPNVGKSSLVRKLTTAKPEVA-----------------PYPFTTKGIHVGHFERG---------- 213 (346)
T ss_pred CCCCCCeEEE---ecCCCCcHHHHHHHHhcCCCccC-----------------CCCccccceeEeeeecC----------
Confidence 3445567788 99999999999999922111111 1112222 222344443
Q ss_pred cccCCCceeEEEEcCCCccc--------hHHHHHHHHHhc-CEEEEEEeCCC--CcchhHH-HHHHHHH-hCCCceEEEE
Q 003378 83 GERQGNEYLINLIDSPGHVD--------FSSEVTAALRIT-DGALVVVDCIE--GVCVQTE-TVLRQAL-GERIRPVLTV 149 (824)
Q Consensus 83 ~~~~~~~~~i~liDTPGh~d--------f~~e~~~~l~~~-D~avlvvd~~~--gv~~~t~-~~l~~~~-~~~~p~ilvi 149 (824)
..+|.+|||||.-| .-..++.|++.. +.+++++|+++ |...... .+|+.+. ....|+++|+
T Consensus 214 ------~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~ 287 (346)
T COG1084 214 ------YLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVI 287 (346)
T ss_pred ------CceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 66999999999754 344577888754 56779999986 3332222 3444443 3456889999
Q ss_pred eCCCcc
Q 003378 150 NKMDRC 155 (824)
Q Consensus 150 NKiD~~ 155 (824)
||+|..
T Consensus 288 nK~D~~ 293 (346)
T COG1084 288 NKIDIA 293 (346)
T ss_pred eccccc
Confidence 999987
No 268
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=2.6e-09 Score=103.69 Aligned_cols=116 Identities=21% Similarity=0.196 Sum_probs=87.7
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
.+++|++ +|..++|||||+-++.. +..+.. .--||..+..+..+.. .
T Consensus 4 ~~~KvvL---LG~~~VGKSSlV~Rfvk--~~F~e~----------------~e~TIGaaF~tktv~~------------~ 50 (200)
T KOG0092|consen 4 REFKVVL---LGDSGVGKSSLVLRFVK--DQFHEN----------------IEPTIGAAFLTKTVTV------------D 50 (200)
T ss_pred ceEEEEE---ECCCCCCchhhhhhhhh--Cccccc----------------cccccccEEEEEEEEe------------C
Confidence 5689999 99999999999999832 222110 1136667766666652 3
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCc--eE--EEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR--PV--LTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p--~i--lviNKiD~~ 155 (824)
+...++-||||+|+++|.+-...+.|.|++||+|.|.++--+.+...-|-.=++...| ++ ||.||+|+.
T Consensus 51 ~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~ 123 (200)
T KOG0092|consen 51 DNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLL 123 (200)
T ss_pred CcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhh
Confidence 3467889999999999999999999999999999999987777777766444444333 23 689999997
No 269
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.93 E-value=4.2e-09 Score=108.88 Aligned_cols=117 Identities=22% Similarity=0.225 Sum_probs=80.8
Q ss_pred CceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccc
Q 003378 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 5 ~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (824)
+.+..+|++ +|.+|+|||||+|.|+...-....+.. + .|.......+ ..
T Consensus 69 ~~k~L~vav---IG~PNvGKStLtN~mig~kv~~vS~K~------~---------TTr~~ilgi~-ts------------ 117 (379)
T KOG1423|consen 69 AQKSLYVAV---IGAPNVGKSTLTNQMIGQKVSAVSRKV------H---------TTRHRILGII-TS------------ 117 (379)
T ss_pred cceEEEEEE---EcCCCcchhhhhhHhhCCccccccccc------c---------ceeeeeeEEE-ec------------
Confidence 367899999 999999999999999643322211101 1 1111111111 11
Q ss_pred cCCCceeEEEEcCCCcc------------chHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhC-CCceEEEEeC
Q 003378 85 RQGNEYLINLIDSPGHV------------DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE-RIRPVLTVNK 151 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~------------df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~-~~p~ilviNK 151 (824)
...++.|.||||.+ .|......|+..||.+++|+|+.+--..-.-++++.+.+. ++|-|+|.||
T Consensus 118 ---~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnk 194 (379)
T KOG1423|consen 118 ---GETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNK 194 (379)
T ss_pred ---CceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccc
Confidence 37899999999943 2555788999999999999999974444444566666554 6799999999
Q ss_pred CCcc
Q 003378 152 MDRC 155 (824)
Q Consensus 152 iD~~ 155 (824)
+|.+
T Consensus 195 id~~ 198 (379)
T KOG1423|consen 195 IDKL 198 (379)
T ss_pred hhcc
Confidence 9987
No 270
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.92 E-value=1.3e-08 Score=99.57 Aligned_cols=109 Identities=18% Similarity=0.187 Sum_probs=72.7
Q ss_pred EEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCce
Q 003378 11 VCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 90 (824)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (824)
|++ +|+.|+|||||++.|......... .+ ..+.|.... .+.+ ..
T Consensus 2 i~l---~G~~g~GKTtL~~~l~~~~~~~~~--~~------------~~~~t~~~~--~~~~-----------------~~ 45 (170)
T cd01876 2 IAF---AGRSNVGKSSLINALTNRKKLART--SK------------TPGKTQLIN--FFNV-----------------ND 45 (170)
T ss_pred EEE---EcCCCCCHHHHHHHHhcCCceeee--cC------------CCCcceeEE--EEEc-----------------cC
Confidence 677 999999999999999531211100 11 112222221 1222 23
Q ss_pred eEEEEcCCCccch----------HHHHHHHHH---hcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 91 LINLIDSPGHVDF----------SSEVTAALR---ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 91 ~i~liDTPGh~df----------~~e~~~~l~---~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
.+.+|||||+.+. ...+...+. .++++++++|...........+++.+...+.|+++++||+|+.
T Consensus 46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~ 123 (170)
T cd01876 46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKL 123 (170)
T ss_pred eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcC
Confidence 8899999997542 222333333 4678999999988877777777788888889999999999986
No 271
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.91 E-value=1.4e-08 Score=115.68 Aligned_cols=112 Identities=22% Similarity=0.164 Sum_probs=72.3
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
..|++ +|.+++|||||+++|....-.+ .|+ .+.|+......+.+.
T Consensus 160 adV~L---VG~PNAGKSTLln~Ls~akpkI----------ady------pfTTl~P~lGvv~~~---------------- 204 (500)
T PRK12296 160 ADVGL---VGFPSAGKSSLISALSAAKPKI----------ADY------PFTTLVPNLGVVQAG---------------- 204 (500)
T ss_pred ceEEE---EEcCCCCHHHHHHHHhcCCccc----------ccc------CcccccceEEEEEEC----------------
Confidence 47889 9999999999999994321111 111 134554444445454
Q ss_pred ceeEEEEcCCCccc-------hHHHHHHHHHhcCEEEEEEeCCC---Ccch-hHHH-----HHHHH----------HhCC
Q 003378 89 EYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE---GVCV-QTET-----VLRQA----------LGER 142 (824)
Q Consensus 89 ~~~i~liDTPGh~d-------f~~e~~~~l~~~D~avlvvd~~~---gv~~-~t~~-----~l~~~----------~~~~ 142 (824)
+..+.|+||||..+ ...+..+.+..+|++|+|||+.. +..+ .... +..+. ...+
T Consensus 205 ~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~ 284 (500)
T PRK12296 205 DTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAE 284 (500)
T ss_pred CeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcC
Confidence 67899999999642 22345566778999999999974 2111 1111 11121 1246
Q ss_pred CceEEEEeCCCcc
Q 003378 143 IRPVLTVNKMDRC 155 (824)
Q Consensus 143 ~p~ilviNKiD~~ 155 (824)
.|+|+|+||+|++
T Consensus 285 kP~IVVlNKiDL~ 297 (500)
T PRK12296 285 RPRLVVLNKIDVP 297 (500)
T ss_pred CCEEEEEECccch
Confidence 8999999999987
No 272
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.91 E-value=4.3e-09 Score=104.66 Aligned_cols=112 Identities=14% Similarity=0.092 Sum_probs=72.0
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeece-EEEEEeechhhhhccccccCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~ 87 (824)
.+|++ +|+.++|||||+.+++...- ..... .|+.... ..+.+. +
T Consensus 2 ~ki~i---iG~~~~GKTsl~~~~~~~~~--~~~~~----------------~t~~~~~~~~~~~~--------------~ 46 (175)
T cd01870 2 KKLVI---VGDGACGKTCLLIVFSKDQF--PEVYV----------------PTVFENYVADIEVD--------------G 46 (175)
T ss_pred cEEEE---ECCCCCCHHHHHHHHhcCCC--CCCCC----------------CccccceEEEEEEC--------------C
Confidence 47888 99999999999999954221 11000 0111111 122221 2
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHH-HHHh--CCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLR-QALG--ERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~-~~~~--~~~p~ilviNKiD~~ 155 (824)
+...+.+|||||+.+|.......++.+|++++|+|...--..... ..|. .+.. .++|+++++||+|+.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 118 (175)
T cd01870 47 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 118 (175)
T ss_pred EEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcc
Confidence 356789999999999877666778899999999998753222221 2232 2222 478999999999986
No 273
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.90 E-value=6.3e-09 Score=105.99 Aligned_cols=115 Identities=17% Similarity=0.137 Sum_probs=70.4
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
+++|++ +|..|+|||||+++|+...... .|... .+. ...|.... .+. ..
T Consensus 1 ~~kI~i---~G~~g~GKSSLin~L~g~~~~~----~~~~~-~~~------~~~t~~~~----~~~-------------~~ 49 (197)
T cd04104 1 PLNIAV---TGESGAGKSSFINALRGVGHEE----EGAAP-TGV------VETTMKRT----PYP-------------HP 49 (197)
T ss_pred CeEEEE---ECCCCCCHHHHHHHHhccCCCC----CCccc-cCc------cccccCce----eee-------------cC
Confidence 368999 9999999999999996422110 11100 000 00111111 111 01
Q ss_pred CceeEEEEcCCCccchHHHHH-----HHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVT-----AALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~-----~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
....+.+|||||..+...... ..+..+|.+++|.| .........+++.+.+.+.|+++|+||+|+.
T Consensus 50 ~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~ 120 (197)
T cd04104 50 KFPNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRD 120 (197)
T ss_pred CCCCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccch
Confidence 134789999999864322111 22456788777754 3466666677788888899999999999995
No 274
>PLN00023 GTP-binding protein; Provisional
Probab=98.90 E-value=6.7e-09 Score=111.35 Aligned_cols=127 Identities=17% Similarity=0.189 Sum_probs=78.8
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeece--EEEEEeechhhhhccccc
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG--ISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~--~~~~~~~~~~~~~~~~~~ 84 (824)
..++|++ +|+.++|||||+.+++... .... ...|+.... ..+.+........++ ..
T Consensus 20 ~~iKIVL---LGdsGVGKTSLI~rf~~g~--F~~~----------------~~pTIG~d~~ik~I~~~~~~~~~~~i-k~ 77 (334)
T PLN00023 20 GQVRVLV---VGDSGVGKSSLVHLIVKGS--SIAR----------------PPQTIGCTVGVKHITYGSPGSSSNSI-KG 77 (334)
T ss_pred cceEEEE---ECCCCCcHHHHHHHHhcCC--cccc----------------cCCceeeeEEEEEEEECCcccccccc-cc
Confidence 4579999 9999999999999995321 1110 011222111 122222000000000 00
Q ss_pred cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHhC---------------CCceEEE
Q 003378 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALGE---------------RIRPVLT 148 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~~~---------------~~p~ilv 148 (824)
.+++.+.++||||+|+..|.......++.+|++|+|+|.+.--......-| ..+... ++|+|||
T Consensus 78 d~~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILV 157 (334)
T PLN00023 78 DSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVI 157 (334)
T ss_pred cCCceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEE
Confidence 112457899999999999998888899999999999998874433333333 333321 4789999
Q ss_pred EeCCCcc
Q 003378 149 VNKMDRC 155 (824)
Q Consensus 149 iNKiD~~ 155 (824)
.||+|+.
T Consensus 158 GNK~DL~ 164 (334)
T PLN00023 158 GNKADIA 164 (334)
T ss_pred EECcccc
Confidence 9999986
No 275
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.89 E-value=7.9e-09 Score=107.27 Aligned_cols=111 Identities=19% Similarity=0.182 Sum_probs=70.1
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccce--eeceEEEEEeechhhhhccccccC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITI--KSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi--~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
++|++ +|..|+|||||+++++. +..... . ...|+ +....++.+.
T Consensus 1 ~KI~l---vG~~gvGKTsLi~~~~~--~~~~~~-~--------------~~~t~~~~~~~~~i~~~-------------- 46 (221)
T cd04148 1 YRVVM---LGSPGVGKSSLASQFTS--GEYDDH-A--------------YDASGDDDTYERTVSVD-------------- 46 (221)
T ss_pred CEEEE---ECCCCCcHHHHHHHHhc--CCcCcc-C--------------cCCCccccceEEEEEEC--------------
Confidence 37888 99999999999999942 221100 0 00111 1111122221
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHH-hcCEEEEEEeCCCCcchhHH-HHHHHHHh----CCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALR-ITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~-~~D~avlvvd~~~gv~~~t~-~~l~~~~~----~~~p~ilviNKiD~~ 155 (824)
+....++||||||+.++.. ...++ .+|++++|+|+.+.-..... ..+..+.. .++|+|+|.||+|+.
T Consensus 47 ~~~~~l~i~Dt~G~~~~~~--~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 119 (221)
T cd04148 47 GEESTLVVIDHWEQEMWTE--DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLA 119 (221)
T ss_pred CEEEEEEEEeCCCcchHHH--hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcc
Confidence 2367899999999984433 23556 89999999999876443322 23333333 468999999999986
No 276
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.88 E-value=2.3e-08 Score=112.51 Aligned_cols=112 Identities=20% Similarity=0.135 Sum_probs=71.8
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
.|++ +|.+++|||||+++|....-.+. ++ .+.|.......+.+. .+
T Consensus 160 dVgl---VG~pNaGKSTLLn~Lt~ak~kIa----------~y------pfTTl~PnlG~v~~~---------------~~ 205 (424)
T PRK12297 160 DVGL---VGFPNVGKSTLLSVVSNAKPKIA----------NY------HFTTLVPNLGVVETD---------------DG 205 (424)
T ss_pred cEEE---EcCCCCCHHHHHHHHHcCCCccc----------cC------CcceeceEEEEEEEe---------------CC
Confidence 7888 99999999999999953221111 11 123444333333332 25
Q ss_pred eeEEEEcCCCccc-------hHHHHHHHHHhcCEEEEEEeCCCC--cch-hH-HHHHHHHHh-----CCCceEEEEeCCC
Q 003378 90 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEG--VCV-QT-ETVLRQALG-----ERIRPVLTVNKMD 153 (824)
Q Consensus 90 ~~i~liDTPGh~d-------f~~e~~~~l~~~D~avlvvd~~~g--v~~-~t-~~~l~~~~~-----~~~p~ilviNKiD 153 (824)
..++|+||||... +.....+.+..+|++|+|||++.. ..+ .. ..+...+.. .++|.++|+||+|
T Consensus 206 ~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~D 285 (424)
T PRK12297 206 RSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMD 285 (424)
T ss_pred ceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCC
Confidence 6899999999753 334455666779999999998742 222 22 223333332 3689999999999
Q ss_pred cc
Q 003378 154 RC 155 (824)
Q Consensus 154 ~~ 155 (824)
+.
T Consensus 286 L~ 287 (424)
T PRK12297 286 LP 287 (424)
T ss_pred Cc
Confidence 75
No 277
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=2.3e-08 Score=97.12 Aligned_cols=116 Identities=19% Similarity=0.158 Sum_probs=87.3
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
+..+|.. +|..++|||||+.++.|..---+ .+-||.....+..+. ..
T Consensus 21 k~~KlVf---lGdqsVGKTslItRf~yd~fd~~------------------YqATIGiDFlskt~~------------l~ 67 (221)
T KOG0094|consen 21 KKYKLVF---LGDQSVGKTSLITRFMYDKFDNT------------------YQATIGIDFLSKTMY------------LE 67 (221)
T ss_pred eEEEEEE---EccCccchHHHHHHHHHhhhccc------------------ccceeeeEEEEEEEE------------Ec
Confidence 4478888 99999999999999987653211 223555555555444 34
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcch-hHHHHHHHHHhCC----CceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQALGER----IRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~-~t~~~l~~~~~~~----~p~ilviNKiD~~ 155 (824)
+..+.+.+|||+|+++|..-+.+++|.+..||+|.|..+--.. +|...+.-++.++ +-++||.||-|+.
T Consensus 68 d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~ 141 (221)
T KOG0094|consen 68 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLS 141 (221)
T ss_pred CcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEccccccc
Confidence 5688999999999999999999999999999999998875444 4555555555443 3355899999998
No 278
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=2.1e-08 Score=99.32 Aligned_cols=117 Identities=18% Similarity=0.133 Sum_probs=84.3
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
+..++|.+ +|.+++|||.++.++...+-.... .. + |-|+....++..
T Consensus 10 d~~~kvll---iGDs~vGKt~~l~rf~d~~f~~~~--~s-T-------------iGIDFk~kti~l-------------- 56 (207)
T KOG0078|consen 10 DYLFKLLL---IGDSGVGKTCLLLRFSDDSFNTSF--IS-T-------------IGIDFKIKTIEL-------------- 56 (207)
T ss_pred ceEEEEEE---ECCCCCchhHhhhhhhhccCcCCc--cc-e-------------EEEEEEEEEEEe--------------
Confidence 56789999 999999999999999432211110 00 0 122222222222
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHH----HhCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA----LGERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~----~~~~~p~ilviNKiD~~ 155 (824)
++...++.+|||.|+..|.....+++|.|+|+++|+|.+...+.....-|.-. ...++|.+||.||+|+.
T Consensus 57 ~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~ 130 (207)
T KOG0078|consen 57 DGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLE 130 (207)
T ss_pred CCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccc
Confidence 34577899999999999999999999999999999999987666555545332 34588999999999987
No 279
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=98.82 E-value=1.5e-08 Score=97.50 Aligned_cols=122 Identities=22% Similarity=0.157 Sum_probs=87.7
Q ss_pred CCCCC-ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhh
Q 003378 1 MSSYC-FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALK 79 (824)
Q Consensus 1 ~~~~~-~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~ 79 (824)
|++.. ...++|.| +|.+|+|||+|.+++.+.. -.+....||..-..+-+..
T Consensus 1 M~~~~K~~lLKVii---LGDsGVGKtSLmn~yv~~k------------------F~~qykaTIgadFltKev~------- 52 (210)
T KOG0394|consen 1 MSSLRKRTLLKVII---LGDSGVGKTSLMNQYVNKK------------------FSQQYKATIGADFLTKEVQ------- 52 (210)
T ss_pred CCCcCcccceEEEE---eCCCCccHHHHHHHHHHHH------------------HHHHhccccchhheeeEEE-------
Confidence 44433 55689999 9999999999999995422 1223345555555544443
Q ss_pred ccccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-----HHHHh---CCCceEEEEeC
Q 003378 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-----RQALG---ERIRPVLTVNK 151 (824)
Q Consensus 80 ~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-----~~~~~---~~~p~ilviNK 151 (824)
.+++...+.||||+|+++|-.--..-.|.+|.+++|.|...--......-| .++.- ..-|.||+.||
T Consensus 53 -----Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNK 127 (210)
T KOG0394|consen 53 -----VDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNK 127 (210)
T ss_pred -----EcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEccc
Confidence 244577899999999999987777778999999999998765444444444 34431 34589999999
Q ss_pred CCcc
Q 003378 152 MDRC 155 (824)
Q Consensus 152 iD~~ 155 (824)
+|..
T Consensus 128 iD~~ 131 (210)
T KOG0394|consen 128 IDVD 131 (210)
T ss_pred ccCC
Confidence 9997
No 280
>PRK09866 hypothetical protein; Provisional
Probab=98.80 E-value=6.1e-08 Score=110.77 Aligned_cols=67 Identities=22% Similarity=0.307 Sum_probs=57.4
Q ss_pred ceeEEEEcCCCccc-----hHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCC--CceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVD-----FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGER--IRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~d-----f~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~--~p~ilviNKiD~~ 155 (824)
...+.|+||||... +...+..++..+|.+++|||+..+.....+.+++.+.+.+ .|+++++||+|+.
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~ 302 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQ 302 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCC
Confidence 35789999999643 5556778999999999999999988888888888888777 4999999999985
No 281
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.79 E-value=7.2e-08 Score=99.25 Aligned_cols=160 Identities=21% Similarity=0.149 Sum_probs=102.8
Q ss_pred CceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccc
Q 003378 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 5 ~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (824)
...+++|-| +|..|+|||||+|+|.......... .|. -+|-.... |.
T Consensus 36 ~~~pvnvLi---~G~TG~GKSSliNALF~~~~~~v~~-vg~--~t~~~~~~---------------~~------------ 82 (296)
T COG3596 36 EKEPVNVLL---MGATGAGKSSLINALFQGEVKEVSK-VGV--GTDITTRL---------------RL------------ 82 (296)
T ss_pred ccCceeEEE---ecCCCCcHHHHHHHHHhccCceeee-ccc--CCCchhhH---------------Hh------------
Confidence 357789888 9999999999999997433322111 220 01100000 10
Q ss_pred cCCCceeEEEEcCCCccc-------hHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhC--CCceEEEEeCCCcc
Q 003378 85 RQGNEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRPVLTVNKMDRC 155 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~d-------f~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~--~~p~ilviNKiD~~ 155 (824)
.+.+..++||||||..| +.......+.-.|.+++++++.+-.-...+..|+.+... +.+.+++||..|+.
T Consensus 83 -~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a 161 (296)
T COG3596 83 -SYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRA 161 (296)
T ss_pred -hccccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhh
Confidence 11257899999999877 555577788899999999999988777777888776544 45888999999996
Q ss_pred hhc----c--cCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceee
Q 003378 156 FLE----L--QVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAF 212 (824)
Q Consensus 156 ~~~----~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~ 212 (824)
.-. + +.....+.+.+++..+.+...+. |.+ +|.+.++..+|++
T Consensus 162 ~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q-------------~V~-pV~~~~~r~~wgl 210 (296)
T COG3596 162 EPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQ-------------EVK-PVVAVSGRLPWGL 210 (296)
T ss_pred ccccccccccCCCCHHHHHHHHHHHHHHHHHHh-------------hcC-CeEEeccccCccH
Confidence 321 1 11212233334444444443332 222 5888888888975
No 282
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=3.8e-08 Score=94.90 Aligned_cols=115 Identities=23% Similarity=0.200 Sum_probs=78.6
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
.+++.+ +|..|+|||.|+-++.. ..... ..|. -|.++.....+. .++
T Consensus 6 ~fKyIi---iGd~gVGKSclllrf~~--krF~~-------~hd~-------TiGvefg~r~~~--------------id~ 52 (216)
T KOG0098|consen 6 LFKYII---IGDTGVGKSCLLLRFTD--KRFQP-------VHDL-------TIGVEFGARMVT--------------IDG 52 (216)
T ss_pred eEEEEE---ECCCCccHHHHHHHHhc--cCccc-------cccc-------eeeeeeceeEEE--------------EcC
Confidence 378888 99999999999988821 11111 1110 011111111111 234
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH----HHHHhCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL----RQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l----~~~~~~~~p~ilviNKiD~~ 155 (824)
+..++++|||.||+.|..-+....|.+-|||||.|...--+......| +|....+..++|+.||+|+.
T Consensus 53 k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~ 124 (216)
T KOG0098|consen 53 KQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLE 124 (216)
T ss_pred ceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhh
Confidence 578999999999999999999999999999999998765444444443 23334567778999999997
No 283
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.77 E-value=1.2e-07 Score=92.88 Aligned_cols=113 Identities=19% Similarity=0.212 Sum_probs=76.4
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
+|++ +|..++|||||+.+|.... .... . ..|+........+. .++..
T Consensus 1 Ki~v---vG~~~vGKtsl~~~~~~~~--~~~~----~------------~~t~~~~~~~~~~~------------~~~~~ 47 (162)
T PF00071_consen 1 KIVV---VGDSGVGKTSLINRLINGE--FPEN----Y------------IPTIGIDSYSKEVS------------IDGKP 47 (162)
T ss_dssp EEEE---EESTTSSHHHHHHHHHHSS--TTSS----S------------ETTSSEEEEEEEEE------------ETTEE
T ss_pred CEEE---ECCCCCCHHHHHHHHHhhc--cccc----c------------cccccccccccccc------------ccccc
Confidence 5888 9999999999999985322 1110 0 01221111111222 12347
Q ss_pred eeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HH---hCCCceEEEEeCCCcc
Q 003378 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-AL---GERIRPVLTVNKMDRC 155 (824)
Q Consensus 90 ~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~-~~---~~~~p~ilviNKiD~~ 155 (824)
+.+.||||+|+.+|.......++.+|++|+|+|....-.......|.. +. ....|++++.||.|+.
T Consensus 48 ~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~ 117 (162)
T PF00071_consen 48 VNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLS 117 (162)
T ss_dssp EEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGG
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccc
Confidence 789999999999998878888999999999999987655444444432 22 2247888999999987
No 284
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.76 E-value=5.5e-08 Score=100.52 Aligned_cols=115 Identities=22% Similarity=0.180 Sum_probs=78.4
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
.++|++ +|..|+|||||+.+|....- .. ....|+.......... ..+
T Consensus 5 ~~kivv---~G~~g~GKTtl~~~l~~~~~--~~----------------~~~~t~~~~~~~~~~~------------~~~ 51 (219)
T COG1100 5 EFKIVV---LGDGGVGKTTLLNRLVGDEF--PE----------------GYPPTIGNLDPAKTIE------------PYR 51 (219)
T ss_pred eEEEEE---EcCCCccHHHHHHHHhcCcC--cc----------------cCCCceeeeeEEEEEE------------eCC
Confidence 378999 99999999999999943221 11 0112222222222211 011
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCC--CcchhHHHHHHHHHhC---CCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE--GVCVQTETVLRQALGE---RIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~--gv~~~t~~~l~~~~~~---~~p~ilviNKiD~~ 155 (824)
...++.+|||+|+.+|..-+....+.++++++++|... ....-++..+..+... +.|++++.||+|+.
T Consensus 52 ~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (219)
T COG1100 52 RNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLF 124 (219)
T ss_pred CEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccc
Confidence 25679999999999999888899999999999999885 3333344444444442 58999999999998
No 285
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=3.5e-08 Score=108.45 Aligned_cols=116 Identities=22% Similarity=0.227 Sum_probs=88.2
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|+| +|.+|+|||||+|+|......|.....|. |-++--+.+..+
T Consensus 266 q~gl~iaI---vGrPNvGKSSLlNaL~~~drsIVSpv~GT---------------TRDaiea~v~~~------------- 314 (531)
T KOG1191|consen 266 QSGLQIAI---VGRPNVGKSSLLNALSREDRSIVSPVPGT---------------TRDAIEAQVTVN------------- 314 (531)
T ss_pred hcCCeEEE---EcCCCCCHHHHHHHHhcCCceEeCCCCCc---------------chhhheeEeecC-------------
Confidence 34589999 99999999999999998888888776773 444444555554
Q ss_pred CCCceeEEEEcCCCccc---------hHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCC------------c
Q 003378 86 QGNEYLINLIDSPGHVD---------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI------------R 144 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~d---------f~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~------------p 144 (824)
++.+.|+||+|... =......+++.+|.+++|||+.++...+...+.+.+...+. |
T Consensus 315 ---G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~ 391 (531)
T KOG1191|consen 315 ---GVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQR 391 (531)
T ss_pred ---CeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccc
Confidence 89999999999765 12235677889999999999999888888777776665544 4
Q ss_pred eEEEEeCCCcc
Q 003378 145 PVLTVNKMDRC 155 (824)
Q Consensus 145 ~ilviNKiD~~ 155 (824)
.|++.||+|..
T Consensus 392 ~i~~~nk~D~~ 402 (531)
T KOG1191|consen 392 IILVANKSDLV 402 (531)
T ss_pred eEEEechhhcc
Confidence 55566666654
No 286
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=3.4e-08 Score=91.55 Aligned_cols=116 Identities=21% Similarity=0.199 Sum_probs=80.5
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
--+++.+ +|+.|.|||.|+.+++...-. .. ... .-|+...+..++. .
T Consensus 8 yLfKfl~---iG~aGtGKSCLLh~Fie~kfk--Dd-ssH-----------TiGveFgSrIinV----------------G 54 (214)
T KOG0086|consen 8 YLFKFLV---IGSAGTGKSCLLHQFIENKFK--DD-SSH-----------TIGVEFGSRIVNV----------------G 54 (214)
T ss_pred hhheeEE---eccCCCChhHHHHHHHHhhhc--cc-ccc-----------eeeeeecceeeee----------------c
Confidence 4478888 999999999999999643210 00 000 0112222222222 3
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH----HHHhCCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR----QALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~----~~~~~~~p~ilviNKiD~~ 155 (824)
++..++.||||+|++.|..-+..+.|.+-||++|.|.+.-.......-|- .+...++-+|++.||-|+.
T Consensus 55 gK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~ 127 (214)
T KOG0086|consen 55 GKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLD 127 (214)
T ss_pred CcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcC
Confidence 45789999999999999999999999999999999998766655555442 2233455567889999987
No 287
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.73 E-value=1.1e-07 Score=89.80 Aligned_cols=113 Identities=20% Similarity=0.201 Sum_probs=84.6
Q ss_pred CceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccc
Q 003378 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 5 ~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (824)
.++.++|-| +|.-||||||++.+|+....... ..|.....-++.++
T Consensus 13 kerE~riLi---LGLdNsGKTti~~kl~~~~~~~i-------------------~pt~gf~Iktl~~~------------ 58 (185)
T KOG0073|consen 13 KEREVRILI---LGLDNSGKTTIVKKLLGEDTDTI-------------------SPTLGFQIKTLEYK------------ 58 (185)
T ss_pred hhheeEEEE---EecCCCCchhHHHHhcCCCcccc-------------------CCccceeeEEEEec------------
Confidence 356889999 99999999999999943331100 01333333455554
Q ss_pred cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcch-hHHHHHHHHH----hCCCceEEEEeCCCcc
Q 003378 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQAL----GERIRPVLTVNKMDRC 155 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~-~t~~~l~~~~----~~~~p~ilviNKiD~~ 155 (824)
++.+|++|.-|+..+..-...+...+|+.|.|||..+-... ++...++.+. -.+.|++++.||.|.+
T Consensus 59 ----~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 59 ----GYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLP 130 (185)
T ss_pred ----ceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCc
Confidence 89999999999999999999999999999999999875433 3444444443 3467999999999998
No 288
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=3.8e-08 Score=95.48 Aligned_cols=114 Identities=19% Similarity=0.178 Sum_probs=87.5
Q ss_pred CCceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccc
Q 003378 4 YCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG 83 (824)
Q Consensus 4 ~~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 83 (824)
+.....+|.+ +|--+|||||++..| ..+.+... --|+...+-.+.|+
T Consensus 13 ~~~~e~~Ilm---lGLD~AGKTTILykL--k~~E~vtt-----------------vPTiGfnVE~v~yk----------- 59 (181)
T KOG0070|consen 13 FGKKEMRILM---VGLDAAGKTTILYKL--KLGEIVTT-----------------VPTIGFNVETVEYK----------- 59 (181)
T ss_pred cCcceEEEEE---EeccCCCceeeeEee--ccCCcccC-----------------CCccccceeEEEEc-----------
Confidence 3467789999 999999999999888 33333221 13677777777775
Q ss_pred ccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCC--cchhHHHHHHHHHh---CCCceEEEEeCCCcc
Q 003378 84 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG--VCVQTETVLRQALG---ERIRPVLTVNKMDRC 155 (824)
Q Consensus 84 ~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~g--v~~~t~~~l~~~~~---~~~p~ilviNKiD~~ 155 (824)
+..+++||.-|+..+..-...+.+..+++|+|||+++- +...-.++.+.+.. .+.|.+++.||.|.+
T Consensus 60 -----n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~ 131 (181)
T KOG0070|consen 60 -----NISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLP 131 (181)
T ss_pred -----ceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcc
Confidence 88999999999999999999999999999999999874 22222334444433 367888999999998
No 289
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.67 E-value=4.1e-07 Score=95.70 Aligned_cols=116 Identities=16% Similarity=0.159 Sum_probs=70.4
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
..+++|++ +|.+|+|||||+++|+........ ++ .+.|.........+.
T Consensus 29 ~~~~~Ill---vG~tGvGKSSliNaLlg~~~~~v~---------~~------~~~T~~~~~~~~~~~------------- 77 (249)
T cd01853 29 DFSLTILV---LGKTGVGKSSTINSIFGERKAATS---------AF------QSETLRVREVSGTVD------------- 77 (249)
T ss_pred cCCeEEEE---ECCCCCcHHHHHHHHhCCCCcccC---------CC------CCceEEEEEEEEEEC-------------
Confidence 56689999 999999999999999654332111 10 012333333333343
Q ss_pred CCCceeEEEEcCCCccchHH------H----HHHHHH--hcCEEEEEEeCCC-CcchhHHHHHHHHHh-CC----CceEE
Q 003378 86 QGNEYLINLIDSPGHVDFSS------E----VTAALR--ITDGALVVVDCIE-GVCVQTETVLRQALG-ER----IRPVL 147 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~------e----~~~~l~--~~D~avlvvd~~~-gv~~~t~~~l~~~~~-~~----~p~il 147 (824)
+..+++|||||..+... + +.+.+. ..|.+++|..... ........+++.+.+ .+ .+.|+
T Consensus 78 ---g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~iv 154 (249)
T cd01853 78 ---GFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIV 154 (249)
T ss_pred ---CeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEE
Confidence 67899999999887631 1 122222 4577666654332 233444455555543 22 36889
Q ss_pred EEeCCCcc
Q 003378 148 TVNKMDRC 155 (824)
Q Consensus 148 viNKiD~~ 155 (824)
|+||+|..
T Consensus 155 V~T~~d~~ 162 (249)
T cd01853 155 VLTHAASS 162 (249)
T ss_pred EEeCCccC
Confidence 99999985
No 290
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.67 E-value=1e-07 Score=96.87 Aligned_cols=68 Identities=19% Similarity=0.155 Sum_probs=49.6
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHH-HHHh--CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLR-QALG--ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~-~~~~--~~~p~ilviNKiD~~ 155 (824)
+++.+.++||||||+.+. ......+.+|++|+|+|..+--+.... ..|. .+.. .++|+|+|.||+|+.
T Consensus 62 ~~~~v~l~iwDTaG~~~~--~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~ 133 (195)
T cd01873 62 DGVSVSLRLWDTFGDHDK--DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLR 133 (195)
T ss_pred CCEEEEEEEEeCCCChhh--hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 345789999999999763 233467899999999999876554433 2343 2322 467999999999986
No 291
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=8.3e-08 Score=94.68 Aligned_cols=117 Identities=19% Similarity=0.186 Sum_probs=83.4
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
+-.++|.+ +|.+++|||-|+.++....-.+..+ . -|-+.....++. .
T Consensus 12 dylFKiVl---iGDS~VGKsnLlsRftrnEF~~~Sk-----------s-----TIGvef~t~t~~--------------v 58 (222)
T KOG0087|consen 12 DYLFKIVL---IGDSAVGKSNLLSRFTRNEFSLESK-----------S-----TIGVEFATRTVN--------------V 58 (222)
T ss_pred ceEEEEEE---eCCCccchhHHHHHhcccccCcccc-----------c-----ceeEEEEeecee--------------e
Confidence 56688999 9999999999999993222221110 0 022222222222 2
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHH-HHHHHh---CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETV-LRQALG---ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~-l~~~~~---~~~p~ilviNKiD~~ 155 (824)
+++-.+..||||+|+.+|..-+....|.+-||++|.|.+...+.+...- |++++. .++++++|.||.|+.
T Consensus 59 d~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~ 132 (222)
T KOG0087|consen 59 DGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLN 132 (222)
T ss_pred cCcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhh
Confidence 4567788999999999999888999999999999999987666654433 355543 477889999999987
No 292
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.66 E-value=1e-07 Score=96.12 Aligned_cols=112 Identities=13% Similarity=0.105 Sum_probs=70.5
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceE-EEEEeechhhhhccccccCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGI-SLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~-~~~~~~~~~~~~~~~~~~~~ 87 (824)
.+|++ +|..|+|||||+.+|.. +..... . ..|+..... .+.+ ++
T Consensus 2 ~Ki~i---vG~~g~GKStLl~~l~~--~~~~~~-~---------------~~t~~~~~~~~~~~--------------~~ 46 (187)
T cd04129 2 RKLVI---VGDGACGKTSLLSVFTL--GEFPEE-Y---------------HPTVFENYVTDCRV--------------DG 46 (187)
T ss_pred eEEEE---ECCCCCCHHHHHHHHHh--CCCCcc-c---------------CCcccceEEEEEEE--------------CC
Confidence 47888 99999999999999952 211110 0 011111111 1122 12
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HH-HHHH--hCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQAL--GERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~-~l-~~~~--~~~~p~ilviNKiD~~ 155 (824)
....++++||||+.+|.......++.+|++++++|....-..+... .| ..+. ...+|+|+|.||+|+.
T Consensus 47 ~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~ 118 (187)
T cd04129 47 KPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLR 118 (187)
T ss_pred EEEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhh
Confidence 3457899999999887654445678999999999987543333221 23 2222 2368999999999985
No 293
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.64 E-value=4.2e-07 Score=94.69 Aligned_cols=67 Identities=15% Similarity=0.125 Sum_probs=53.7
Q ss_pred ceeEEEEcCCCccch-------------HHHHHHHHH-hcCEEEEEEeCCCCcchhH-HHHHHHHHhCCCceEEEEeCCC
Q 003378 89 EYLINLIDSPGHVDF-------------SSEVTAALR-ITDGALVVVDCIEGVCVQT-ETVLRQALGERIRPVLTVNKMD 153 (824)
Q Consensus 89 ~~~i~liDTPGh~df-------------~~e~~~~l~-~~D~avlvvd~~~gv~~~t-~~~l~~~~~~~~p~ilviNKiD 153 (824)
-..++||||||..+. ...+..+++ ..+.+++|+|+..++..+. .++.+.+...+.|.++|+||+|
T Consensus 124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D 203 (240)
T smart00053 124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLD 203 (240)
T ss_pred CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCC
Confidence 468999999998531 123556677 4468999999999998877 4777888888999999999999
Q ss_pred cc
Q 003378 154 RC 155 (824)
Q Consensus 154 ~~ 155 (824)
..
T Consensus 204 ~~ 205 (240)
T smart00053 204 LM 205 (240)
T ss_pred CC
Confidence 87
No 294
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.63 E-value=1.7e-07 Score=92.00 Aligned_cols=107 Identities=16% Similarity=0.129 Sum_probs=69.6
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
++|++ +|+.|+|||||+.+++.. ..... ..+ +.......+.+ +++
T Consensus 1 ~ki~v---vG~~gvGKTsli~~~~~~--~f~~~---------~~~-------~~~~~~~~i~~--------------~~~ 45 (158)
T cd04103 1 LKLGI---VGNLQSGKSALVHRYLTG--SYVQL---------ESP-------EGGRFKKEVLV--------------DGQ 45 (158)
T ss_pred CEEEE---ECCCCCcHHHHHHHHHhC--CCCCC---------CCC-------CccceEEEEEE--------------CCE
Confidence 47889 999999999999998532 11110 000 00000111222 223
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHHh----CCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~~~~~----~~~p~ilviNKiD~~ 155 (824)
...+.+|||+|..+. ...+.+|++++|+|..+--..+.. ..+..+.. .++|+++|.||+|+.
T Consensus 46 ~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~ 112 (158)
T cd04103 46 SHLLLIRDEGGAPDA-----QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAIS 112 (158)
T ss_pred EEEEEEEECCCCCch-----hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhh
Confidence 567999999999762 356789999999999987666653 33344432 357899999999975
No 295
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=98.62 E-value=2.2e-08 Score=84.80 Aligned_cols=71 Identities=35% Similarity=0.531 Sum_probs=58.8
Q ss_pred eeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccccccccce-eee
Q 003378 385 FAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLT 460 (824)
Q Consensus 385 l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~ 460 (824)
++++||+||+|++||+|++++ +.+.. +....+|.+|+.+++...++++.+.||+++++.++++.+ +.| |||
T Consensus 3 v~~grV~sG~l~~gd~v~~~~-~~~~~---~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i-~~Gdtl~ 74 (74)
T PF03144_consen 3 VATGRVYSGTLKKGDKVRVLP-NGTGK---KGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAI-RRGDTLT 74 (74)
T ss_dssp EEEEEEEESEEETTEEEEEES-TTTTE---ECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCS-STTEEEE
T ss_pred EEEEEEEEeEEcCCCEEEECc-cCCcc---eeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCc-CcCCEEC
Confidence 899999999999999999876 42211 123479999999999999999999999999999999832 566 775
No 296
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.61 E-value=9e-08 Score=88.54 Aligned_cols=114 Identities=19% Similarity=0.163 Sum_probs=77.6
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
....+.+ +|-.++||||+++... .|...+. . +-|+......+ .
T Consensus 19 ~emel~l---vGLq~sGKtt~Vn~ia--~g~~~ed-m---------------iptvGfnmrk~----------------t 61 (186)
T KOG0075|consen 19 EEMELSL---VGLQNSGKTTLVNVIA--RGQYLED-M---------------IPTVGFNMRKV----------------T 61 (186)
T ss_pred heeeEEE---EeeccCCcceEEEEEe--eccchhh-h---------------cccccceeEEe----------------c
Confidence 3456777 9999999999998762 2211110 1 11222222211 1
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCC--cchhHHHH---HHHHHhCCCceEEEEeCCCcchhcccC
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG--VCVQTETV---LRQALGERIRPVLTVNKMDRCFLELQV 161 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~g--v~~~t~~~---l~~~~~~~~p~ilviNKiD~~~~~~~~ 161 (824)
..+..|-++|.||+..|.....+..|.+|.++++|||.+- +...-.++ +....-.++|.++..||+|++ ++
T Consensus 62 kgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~----~A 137 (186)
T KOG0075|consen 62 KGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLP----GA 137 (186)
T ss_pred cCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCc----cc
Confidence 2367899999999999999999999999999999999873 22222222 222233578999999999999 76
No 297
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.60 E-value=4e-07 Score=94.21 Aligned_cols=134 Identities=14% Similarity=0.159 Sum_probs=78.2
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
+|.+ +|..++||||....+......-+ +. .-|.|++.....+.+. ..
T Consensus 1 KiLL---mG~~~SGKTSi~~vIF~~~~p~d------T~---------~L~~T~~ve~~~v~~~---------------~~ 47 (232)
T PF04670_consen 1 KILL---MGPRRSGKTSIRSVIFHKYSPRD------TL---------RLEPTIDVEKSHVRFL---------------SF 47 (232)
T ss_dssp EEEE---EESTTSSHHHHHHHHHS---GGG------GG---------G-----SEEEEEEECT---------------TS
T ss_pred CEEE---EcCCCCChhhHHHHHHcCCCchh------cc---------ccCCcCCceEEEEecC---------------CC
Confidence 5778 99999999999998843221111 11 1234665555555443 35
Q ss_pred eeEEEEcCCCccchHHH-----HHHHHHhcCEEEEEEeCCCCcchhHH----HHHHHHHh--CCCceEEEEeCCCcchhc
Q 003378 90 YLINLIDSPGHVDFSSE-----VTAALRITDGALVVVDCIEGVCVQTE----TVLRQALG--ERIRPVLTVNKMDRCFLE 158 (824)
Q Consensus 90 ~~i~liDTPGh~df~~e-----~~~~l~~~D~avlvvd~~~gv~~~t~----~~l~~~~~--~~~p~ilviNKiD~~~~~ 158 (824)
..+++||+||+.+|... ....++.+++.|+|+|+...-..... ..+..+.+ .++.+-+++.|||+.
T Consensus 48 ~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l--- 124 (232)
T PF04670_consen 48 LPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLL--- 124 (232)
T ss_dssp CEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS---
T ss_pred cEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccC---
Confidence 69999999999988765 46678999999999999933222221 23333433 355667999999987
Q ss_pred ccCCHHHHHHHHHHHHHHhhhhhh
Q 003378 159 LQVDGEEAYQTFQKVIENANVIMA 182 (824)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~l~ 182 (824)
. .+.-.+.++.+.+.+...+.
T Consensus 125 -~--~~~r~~~~~~~~~~i~~~~~ 145 (232)
T PF04670_consen 125 -S--EDEREEIFRDIQQRIRDELE 145 (232)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHH
T ss_pred -C--HHHHHHHHHHHHHHHHHHhh
Confidence 3 33333344444444444443
No 298
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.59 E-value=1.4e-07 Score=108.43 Aligned_cols=109 Identities=26% Similarity=0.347 Sum_probs=79.9
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCcee-ecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVR-MTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~-~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
.+||+ +|++|+|||||.|+| .|... +.++ -|.|++.....+.+.
T Consensus 4 ~~val---vGNPNvGKTtlFN~L-----------TG~~q~VgNw------pGvTVEkkeg~~~~~--------------- 48 (653)
T COG0370 4 LTVAL---VGNPNVGKTTLFNAL-----------TGANQKVGNW------PGVTVEKKEGKLKYK--------------- 48 (653)
T ss_pred ceEEE---ecCCCccHHHHHHHH-----------hccCceecCC------CCeeEEEEEEEEEec---------------
Confidence 56999 999999999999999 33222 2222 378999988888886
Q ss_pred CceeEEEEcCCCccchHH----H--HHHHH--HhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSS----E--VTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~----e--~~~~l--~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
++.+.++|.||.-.+.. | +...+ ...|.+|-||||+. -.....+--|+.+.++|+|+++|++|..
T Consensus 49 -~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~A 121 (653)
T COG0370 49 -GHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDEA 121 (653)
T ss_pred -CceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhhH
Confidence 78899999999654321 1 22333 25699999999874 1222233356788999999999999975
No 299
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.57 E-value=7.3e-07 Score=93.25 Aligned_cols=98 Identities=28% Similarity=0.277 Sum_probs=63.6
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
+|++ +|.+++|||||+++|...... .+. -.+.|.......+.+. +
T Consensus 2 ~v~l---vG~~~~GKStLl~~Ltg~~~~-----v~~-----------~~~tT~~~~~g~~~~~----------------~ 46 (233)
T cd01896 2 RVAL---VGFPSVGKSTLLSKLTNTKSE-----VAA-----------YEFTTLTCVPGVLEYK----------------G 46 (233)
T ss_pred EEEE---ECCCCCCHHHHHHHHHCCCcc-----ccC-----------CCCccccceEEEEEEC----------------C
Confidence 5788 999999999999999432111 110 0122333333334443 6
Q ss_pred eeEEEEcCCCccc-------hHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCC
Q 003378 90 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI 143 (824)
Q Consensus 90 ~~i~liDTPGh~d-------f~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~ 143 (824)
..+++|||||+.+ +..++...++.+|++++|+|+.+... +-..+...+...++
T Consensus 47 ~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~~-~~~~~~~~l~~~gi 106 (233)
T cd01896 47 AKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPEG-HREILERELEGVGI 106 (233)
T ss_pred eEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcchh-HHHHHHHHHHHcCc
Confidence 7899999999854 33456778899999999999976432 44455566654433
No 300
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=2.8e-07 Score=91.18 Aligned_cols=127 Identities=22% Similarity=0.283 Sum_probs=82.5
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
.|-+ +|..|+|||+|.-.|++... .+.+ .+|..+...+... +
T Consensus 40 ~Vll---~Gl~dSGKT~LF~qL~~gs~------~~Tv-------------tSiepn~a~~r~g----------------s 81 (238)
T KOG0090|consen 40 AVLL---VGLSDSGKTSLFTQLITGSH------RGTV-------------TSIEPNEATYRLG----------------S 81 (238)
T ss_pred cEEE---EecCCCCceeeeeehhcCCc------cCee-------------eeeccceeeEeec----------------C
Confidence 3556 89999999999999954311 2211 2444444444443 4
Q ss_pred eeEEEEcCCCccchHHHHHHHHH---hcCEEEEEEeCCCC---cchhHHHHHHHHH-----hCCCceEEEEeCCCcchhc
Q 003378 90 YLINLIDSPGHVDFSSEVTAALR---ITDGALVVVDCIEG---VCVQTETVLRQAL-----GERIRPVLTVNKMDRCFLE 158 (824)
Q Consensus 90 ~~i~liDTPGh~df~~e~~~~l~---~~D~avlvvd~~~g---v~~~t~~~l~~~~-----~~~~p~ilviNKiD~~~~~ 158 (824)
....+||-|||..........+. .+-++|+|||+..- +..-.+.+...+. ...+|++++.||-|+.
T Consensus 82 ~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~--- 158 (238)
T KOG0090|consen 82 ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF--- 158 (238)
T ss_pred cceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh---
Confidence 45899999999998887777776 78899999998853 2222222323222 3345677999999998
Q ss_pred ccCC-HHHHHHHHHHHHHHhh
Q 003378 159 LQVD-GEEAYQTFQKVIENAN 178 (824)
Q Consensus 159 ~~~~-~~~~~~~~~~~~~~~~ 178 (824)
-+. ++-+.++++.-+..++
T Consensus 159 -tAkt~~~Ir~~LEkEi~~lr 178 (238)
T KOG0090|consen 159 -TAKTAEKIRQQLEKEIHKLR 178 (238)
T ss_pred -hcCcHHHHHHHHHHHHHHHH
Confidence 664 4445555555555443
No 301
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.54 E-value=3.6e-07 Score=95.88 Aligned_cols=84 Identities=27% Similarity=0.335 Sum_probs=58.1
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
..|++ +|.+++|||||+++|. +.-+. .+. ..+ .|.....--+.|+
T Consensus 64 a~v~l---VGfPsvGKStLL~~LT---nt~se--va~---y~F--------TTl~~VPG~l~Y~---------------- 108 (365)
T COG1163 64 ATVAL---VGFPSVGKSTLLNKLT---NTKSE--VAD---YPF--------TTLEPVPGMLEYK---------------- 108 (365)
T ss_pred eEEEE---EcCCCccHHHHHHHHh---CCCcc--ccc---cCc--------eecccccceEeec----------------
Confidence 47888 9999999999999992 21111 221 111 1233333334554
Q ss_pred ceeEEEEcCCCccch-------HHHHHHHHHhcCEEEEEEeCCCCc
Q 003378 89 EYLINLIDSPGHVDF-------SSEVTAALRITDGALVVVDCIEGV 127 (824)
Q Consensus 89 ~~~i~liDTPGh~df-------~~e~~~~l~~~D~avlvvd~~~gv 127 (824)
+..|.++|+||...= -.++...+|.||.+++|+|+.+..
T Consensus 109 ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~ 154 (365)
T COG1163 109 GAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDP 154 (365)
T ss_pred CceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCCh
Confidence 889999999997541 246888999999999999998654
No 302
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=98.53 E-value=5.3e-07 Score=83.47 Aligned_cols=114 Identities=20% Similarity=0.239 Sum_probs=80.2
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
.+.+| +|.+++|||+|+-++... .. .|+...+ |.++...-+.. .++.
T Consensus 9 fkllI---igDsgVGKssLl~rF~dd--tF----s~sYitT----------iGvDfkirTv~--------------i~G~ 55 (198)
T KOG0079|consen 9 FKLLI---IGDSGVGKSSLLLRFADD--TF----SGSYITT----------IGVDFKIRTVD--------------INGD 55 (198)
T ss_pred HHHHe---ecCCcccHHHHHHHHhhc--cc----ccceEEE----------eeeeEEEEEee--------------cCCc
Confidence 45677 999999999999888322 22 1211100 11222222222 2456
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHH--hCCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL--GERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~--~~~~p~ilviNKiD~~ 155 (824)
..++.||||+|++.|...+....+..+++++|.|.+.|-....-.-| +.++ .-.+|.++|.||.|.+
T Consensus 56 ~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~ 125 (198)
T KOG0079|consen 56 RVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDP 125 (198)
T ss_pred EEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCc
Confidence 78999999999999999999999999999999999988766555444 3332 2356889999999987
No 303
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.52 E-value=1.2e-06 Score=95.71 Aligned_cols=131 Identities=18% Similarity=0.243 Sum_probs=81.1
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCC--cccccCCceeecCChhhHhHhc---cceeeceE---EEEEeechhhhh
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGI--IAQEVAGDVRMTDTRQDEAERG---ITIKSTGI---SLYYEMTDAALK 79 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~--i~~~~~g~~~~~D~~~~E~~rg---iTi~~~~~---~~~~~~~~~~~~ 79 (824)
.+.|++ +|++++|||||++++....-. +... ..+.|..|-.+.. ..| +|.+...+ ..+..
T Consensus 17 ~IyIGv---vGpvrtGKSTfIn~fm~q~VlP~i~~~-~~k~Ra~DELpqs-~~GktItTTePkfvP~kAvEI~------- 84 (492)
T TIGR02836 17 DIYIGV---VGPVRTGKSTFIKKFMELLVLPNISNE-YDKERAQDELPQS-AAGKTIMTTEPKFVPNEAVEIN------- 84 (492)
T ss_pred cEEEEE---EcCCCCChHHHHHHHHhhhccccccch-hHHhHHHhccCcC-CCCCCcccCCCccccCcceEEe-------
Confidence 367888 999999999999999655110 0000 0000111111111 113 22222220 11111
Q ss_pred ccccccCCCceeEEEEcCCCccc-------------------------hHHH----HHHHHH-hcCEEEEEE-eCC----
Q 003378 80 SYRGERQGNEYLINLIDSPGHVD-------------------------FSSE----VTAALR-ITDGALVVV-DCI---- 124 (824)
Q Consensus 80 ~~~~~~~~~~~~i~liDTPGh~d-------------------------f~~e----~~~~l~-~~D~avlvv-d~~---- 124 (824)
..++-..++.||||+|+.+ |... +...+. .+|.+|+|. |++
T Consensus 85 ----~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI 160 (492)
T TIGR02836 85 ----INEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDI 160 (492)
T ss_pred ----ccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCcccc
Confidence 1223356899999999754 2222 455666 899999999 886
Q ss_pred --CCcchhHHHHHHHHHhCCCceEEEEeCCCc
Q 003378 125 --EGVCVQTETVLRQALGERIRPVLTVNKMDR 154 (824)
Q Consensus 125 --~gv~~~t~~~l~~~~~~~~p~ilviNKiD~ 154 (824)
++.....++++..+.+.++|.|+++||.|-
T Consensus 161 ~Re~y~~aEe~~i~eLk~~~kPfiivlN~~dp 192 (492)
T TIGR02836 161 PREDYVEAEERVIEELKELNKPFIILLNSTHP 192 (492)
T ss_pred ccccchHHHHHHHHHHHhcCCCEEEEEECcCC
Confidence 566777888889999999999999999994
No 304
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.49 E-value=1.7e-06 Score=92.54 Aligned_cols=117 Identities=14% Similarity=0.175 Sum_probs=69.8
Q ss_pred CceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccc
Q 003378 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 5 ~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (824)
+...++|++ +|..|+|||||+|+|+...-.......+ .|.........+
T Consensus 35 ~~~~~rIll---vGktGVGKSSliNsIlG~~v~~vs~f~s---------------~t~~~~~~~~~~------------- 83 (313)
T TIGR00991 35 DVSSLTILV---MGKGGVGKSSTVNSIIGERIATVSAFQS---------------EGLRPMMVSRTR------------- 83 (313)
T ss_pred cccceEEEE---ECCCCCCHHHHHHHHhCCCcccccCCCC---------------cceeEEEEEEEE-------------
Confidence 356789999 9999999999999996433211110000 111111222223
Q ss_pred cCCCceeEEEEcCCCccchHH---HHHHHHH------hcCEEEEEEeCCC-CcchhHHHHHHHHHhC-----CCceEEEE
Q 003378 85 RQGNEYLINLIDSPGHVDFSS---EVTAALR------ITDGALVVVDCIE-GVCVQTETVLRQALGE-----RIRPVLTV 149 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~---e~~~~l~------~~D~avlvvd~~~-gv~~~t~~~l~~~~~~-----~~p~ilvi 149 (824)
.+..+++|||||..+... +....++ ..|.+++|..... ........+++.+... ..+.|+++
T Consensus 84 ---~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVf 160 (313)
T TIGR00991 84 ---AGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVL 160 (313)
T ss_pred ---CCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEE
Confidence 278999999999886421 2223333 4788888854322 2343444555544321 24689999
Q ss_pred eCCCcc
Q 003378 150 NKMDRC 155 (824)
Q Consensus 150 NKiD~~ 155 (824)
|+.|..
T Consensus 161 Th~d~~ 166 (313)
T TIGR00991 161 THAQFS 166 (313)
T ss_pred ECCccC
Confidence 999965
No 305
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=98.46 E-value=9.4e-08 Score=89.27 Aligned_cols=115 Identities=20% Similarity=0.209 Sum_probs=80.9
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
.++|++ +|..=+|||+|+=+..... .+.. +-.|+.++..+-..+ ..+
T Consensus 13 ~FK~VL---LGEGCVGKtSLVLRy~Enk--Fn~k----------------HlsTlQASF~~kk~n------------~ed 59 (218)
T KOG0088|consen 13 KFKIVL---LGEGCVGKTSLVLRYVENK--FNCK----------------HLSTLQASFQNKKVN------------VED 59 (218)
T ss_pred eeEEEE---EcCCccchhHHHHHHHHhh--cchh----------------hHHHHHHHHhhcccc------------ccc
Confidence 468888 9999999999998774211 1110 011333332222221 233
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH----HHHHhCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL----RQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l----~~~~~~~~p~ilviNKiD~~ 155 (824)
....++||||+|++.|..-=.-+.|.+|||++|.|.++-...|-..-| +.++..-+-.+||.||+|+.
T Consensus 60 ~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLE 131 (218)
T KOG0088|consen 60 CRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLE 131 (218)
T ss_pred ceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHH
Confidence 456799999999999987666677999999999999998888877666 44455566778999999987
No 306
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.42 E-value=3e-07 Score=87.77 Aligned_cols=117 Identities=21% Similarity=0.243 Sum_probs=85.0
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
++.|++.| +|..++||||++.+. ..|+..+. -.++...|+.. |.|-+
T Consensus 18 e~aiK~vi---vGng~VGKssmiqry--CkgifTkd-ykktIgvdfle----rqi~v----------------------- 64 (246)
T KOG4252|consen 18 ERAIKFVI---VGNGSVGKSSMIQRY--CKGIFTKD-YKKTIGVDFLE----RQIKV----------------------- 64 (246)
T ss_pred hhhEEEEE---ECCCccchHHHHHHH--hccccccc-cccccchhhhh----HHHHh-----------------------
Confidence 57799999 999999999999987 55655442 11122334322 11211
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH---HHHhCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR---QALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~---~~~~~~~p~ilviNKiD~~ 155 (824)
+..+.++-+|||.|+.+|..-+..+.|.+.++|||++.++--......-|+ +..-.++|.++|-||||++
T Consensus 65 ~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlv 137 (246)
T KOG4252|consen 65 LIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLV 137 (246)
T ss_pred hHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhh
Confidence 123567789999999999999999999999999999988765544433343 3345789999999999987
No 307
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.39 E-value=1.2e-06 Score=88.91 Aligned_cols=115 Identities=21% Similarity=0.235 Sum_probs=79.9
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
++.+|++ +|..|+|||+|+-++++..-. -++. -|+..+...- .. .+
T Consensus 2 ~~~kvvv---lG~~gVGKSal~~qf~~~~f~-----------~~y~-------ptied~y~k~-~~------------v~ 47 (196)
T KOG0395|consen 2 REYKVVV---LGAGGVGKSALTIQFLTGRFV-----------EDYD-------PTIEDSYRKE-LT------------VD 47 (196)
T ss_pred CceEEEE---ECCCCCCcchheeeecccccc-----------cccC-------CCccccceEE-EE------------EC
Confidence 3568889 999999999999999532211 1111 1222111110 00 12
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHHH----HhCCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQA----LGERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~-~l~~~----~~~~~p~ilviNKiD~~ 155 (824)
+....+.|+||+|..+|...-...++.+|+-++|.+..+--+.+... ++.++ ....+|+++|.||.|+.
T Consensus 48 ~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~ 121 (196)
T KOG0395|consen 48 GEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLE 121 (196)
T ss_pred CEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccch
Confidence 34678889999999999999999999999999999998765444433 33333 23567999999999998
No 308
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=2.2e-06 Score=79.37 Aligned_cols=114 Identities=17% Similarity=0.174 Sum_probs=77.2
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
.++-| +|+..+|||+++-+.+..+-.+.- ++ .-||-.+... + |+ +.+
T Consensus 22 fKlli---iGnssvGKTSfl~ry~ddSFt~af-----vs---------TvGidFKvKT--v-yr-------------~~k 68 (193)
T KOG0093|consen 22 FKLLI---IGNSSVGKTSFLFRYADDSFTSAF-----VS---------TVGIDFKVKT--V-YR-------------SDK 68 (193)
T ss_pred eeEEE---EccCCccchhhhHHhhccccccce-----ee---------eeeeeEEEeE--e-ee-------------ccc
Confidence 47888 999999999999888432211100 00 0122222221 1 22 224
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHH----HhCCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA----LGERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~----~~~~~p~ilviNKiD~~ 155 (824)
..++.+|||.|++.+..-+....|.++|.||+.|.+..-......-|--. --.+.|+|+|.||+|+.
T Consensus 69 RiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd 139 (193)
T KOG0093|consen 69 RIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMD 139 (193)
T ss_pred EEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCc
Confidence 57899999999999988888999999999999998865444333333211 23578999999999987
No 309
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.36 E-value=1.3e-06 Score=80.34 Aligned_cols=112 Identities=19% Similarity=0.201 Sum_probs=79.5
Q ss_pred CceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhcc--ceeeceEEEEEeechhhhhccc
Q 003378 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGI--TIKSTGISLYYEMTDAALKSYR 82 (824)
Q Consensus 5 ~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgi--Ti~~~~~~~~~~~~~~~~~~~~ 82 (824)
..+.|+|.+ +|-.++||||++..|-... .|.+ |-..+..+..+.
T Consensus 14 t~rEirill---lGldnAGKTT~LKqL~sED---------------------~~hltpT~GFn~k~v~~~---------- 59 (185)
T KOG0074|consen 14 TRREIRILL---LGLDNAGKTTFLKQLKSED---------------------PRHLTPTNGFNTKKVEYD---------- 59 (185)
T ss_pred CcceEEEEE---EecCCCcchhHHHHHccCC---------------------hhhccccCCcceEEEeec----------
Confidence 468899999 9999999999999992211 1111 122233344443
Q ss_pred cccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcch--hHHHHHHHH---HhCCCceEEEEeCCCcc
Q 003378 83 GERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV--QTETVLRQA---LGERIRPVLTVNKMDRC 155 (824)
Q Consensus 83 ~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~--~t~~~l~~~---~~~~~p~ilviNKiD~~ 155 (824)
..+++|++|.-|+.....-...+....|+.|+|||+.+.-.. ..++..+.+ .-..+|+.++.||-|++
T Consensus 60 -----g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdll 132 (185)
T KOG0074|consen 60 -----GTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLL 132 (185)
T ss_pred -----CcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHH
Confidence 368999999999999889999999999999999997753211 111222222 23467899999999997
No 310
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=2e-06 Score=79.07 Aligned_cols=120 Identities=18% Similarity=0.137 Sum_probs=83.9
Q ss_pred CCceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccc
Q 003378 4 YCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG 83 (824)
Q Consensus 4 ~~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 83 (824)
++.++.+|.. +|-.++||||++-.|- .+..+.. . -|+..++-++.|.
T Consensus 13 f~~KE~~ilm---lGLd~aGKTtiLyKLk--l~~~~~~-------i----------pTvGFnvetVtyk----------- 59 (180)
T KOG0071|consen 13 FGNKEMRILM---LGLDAAGKTTILYKLK--LGQSVTT-------I----------PTVGFNVETVTYK----------- 59 (180)
T ss_pred hCcccceEEE---EecccCCceehhhHHh--cCCCccc-------c----------cccceeEEEEEee-----------
Confidence 4556788888 9999999999999883 2222110 0 1233333344454
Q ss_pred ccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCC--cchhHHHHHHHH---HhCCCceEEEEeCCCcchhc
Q 003378 84 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG--VCVQTETVLRQA---LGERIRPVLTVNKMDRCFLE 158 (824)
Q Consensus 84 ~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~g--v~~~t~~~l~~~---~~~~~p~ilviNKiD~~~~~ 158 (824)
+.++|++|.-|+.....-..++...+-+.|+|+|+.+. +...-.++.+.+ .-..+|.+++.||-|++
T Consensus 60 -----N~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp--- 131 (180)
T KOG0071|consen 60 -----NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLP--- 131 (180)
T ss_pred -----eeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccc---
Confidence 78999999999999999999999999999999998764 222222333333 23456788999999999
Q ss_pred ccC-CHHH
Q 003378 159 LQV-DGEE 165 (824)
Q Consensus 159 ~~~-~~~~ 165 (824)
.+ .|.+
T Consensus 132 -~A~~pqe 138 (180)
T KOG0071|consen 132 -DAMKPQE 138 (180)
T ss_pred -cccCHHH
Confidence 66 5444
No 311
>COG2262 HflX GTPases [General function prediction only]
Probab=98.36 E-value=1.8e-06 Score=93.90 Aligned_cols=113 Identities=27% Similarity=0.274 Sum_probs=74.3
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
..|++ +|-.|+|||||.|+|....-... | +.=-|.+.+.-.+.+. .
T Consensus 193 p~vaL---vGYTNAGKSTL~N~LT~~~~~~~----------d------~LFATLdpttR~~~l~---------------~ 238 (411)
T COG2262 193 PLVAL---VGYTNAGKSTLFNALTGADVYVA----------D------QLFATLDPTTRRIELG---------------D 238 (411)
T ss_pred CeEEE---EeeccccHHHHHHHHhccCeecc----------c------cccccccCceeEEEeC---------------C
Confidence 46888 99999999999999941111100 1 0112444555555554 3
Q ss_pred ceeEEEEcCCCccc-----h---HHHHHHHHHhcCEEEEEEeCCCC-cchhHHH---HHHHHHhCCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVD-----F---SSEVTAALRITDGALVVVDCIEG-VCVQTET---VLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~d-----f---~~e~~~~l~~~D~avlvvd~~~g-v~~~t~~---~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+..+.+-||=|..+ . ...+......+|..+.|||+++. +..+-.. ++..+....+|+|+|.||+|+.
T Consensus 239 g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~ 317 (411)
T COG2262 239 GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLL 317 (411)
T ss_pred CceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEeccccc
Confidence 68899999999864 1 12233445689999999999975 3333333 3344434567999999999987
No 312
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.31 E-value=9.5e-07 Score=87.25 Aligned_cols=64 Identities=23% Similarity=0.293 Sum_probs=46.4
Q ss_pred ceeEEEEcCCCccchH----HHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCC-ceEEEEeCC
Q 003378 89 EYLINLIDSPGHVDFS----SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI-RPVLTVNKM 152 (824)
Q Consensus 89 ~~~i~liDTPGh~df~----~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~-p~ilviNKi 152 (824)
...+.||||||..+.. ..+...+..+|.+|+|+++......+....|.+...... ..++|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 4568999999985532 346777799999999999999777666666655555444 466788885
No 313
>PRK13768 GTPase; Provisional
Probab=98.30 E-value=1.7e-06 Score=91.59 Aligned_cols=67 Identities=16% Similarity=0.195 Sum_probs=47.7
Q ss_pred ceeEEEEcCCCccchHH---H---HHHHHHh--cCEEEEEEeCCCCcchhHHHHHHHH-----HhCCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSS---E---VTAALRI--TDGALVVVDCIEGVCVQTETVLRQA-----LGERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~---e---~~~~l~~--~D~avlvvd~~~gv~~~t~~~l~~~-----~~~~~p~ilviNKiD~~ 155 (824)
+..+.+|||||+.++.. . ..+.+.. ++.+++|+|+..+....+......+ ...++|+++|+||+|+.
T Consensus 96 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 96 DADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLL 175 (253)
T ss_pred CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhc
Confidence 34788999999877432 2 2222333 8999999999887766665433322 25789999999999987
No 314
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.29 E-value=3e-06 Score=92.37 Aligned_cols=62 Identities=21% Similarity=0.193 Sum_probs=44.5
Q ss_pred cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHH--HHHHHHhCCCceEEEEeCCCcc
Q 003378 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET--VLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~--~l~~~~~~~~p~ilviNKiD~~ 155 (824)
.+..++.+.||||+|... .++. ....+|.+++|+++..|...|... ++..+ -|+|+||+|+.
T Consensus 144 ~~~~g~d~viieT~Gv~q--s~~~-i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~a------DIiVVNKaDl~ 207 (332)
T PRK09435 144 CEAAGYDVILVETVGVGQ--SETA-VAGMVDFFLLLQLPGAGDELQGIKKGIMELA------DLIVINKADGD 207 (332)
T ss_pred HhccCCCEEEEECCCCcc--chhH-HHHhCCEEEEEecCCchHHHHHHHhhhhhhh------heEEeehhccc
Confidence 344578999999999874 3333 577899999998866665555432 33333 38999999987
No 315
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.23 E-value=6e-06 Score=70.33 Aligned_cols=78 Identities=28% Similarity=0.296 Sum_probs=58.6
Q ss_pred eEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEe
Q 003378 368 LMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 447 (824)
Q Consensus 368 ~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~ 447 (824)
+.++|++++.++..|. ++++||++|+|++|+.+++.+.. .. ...+|.+|+... .+++++.|||++++.
T Consensus 1 ~~~~v~~~~~~~~~g~-v~~~rv~~G~l~~g~~v~~~~~~--~~-----~~~~i~~i~~~~----~~~~~~~aG~~~~~~ 68 (83)
T cd01342 1 LRALVFKVFKDKGRGT-VATGRVESGTLKKGDKVRVGPGG--GG-----VKGKVKSLKRFK----GEVDEAVAGDIVGIV 68 (83)
T ss_pred CeeEEEEEEEeCCceE-EEEEEEeeCEEecCCEEEEecCC--ce-----eEEEEeEeEecC----ceeceecCCCEEEEE
Confidence 3578888888776665 99999999999999999976420 11 136888888765 678999999999998
Q ss_pred ccccccccce
Q 003378 448 GLDQYITKNA 457 (824)
Q Consensus 448 gl~~~~~~tg 457 (824)
+.+....++|
T Consensus 69 ~~~~~~~~~g 78 (83)
T cd01342 69 LKDKDDIKIG 78 (83)
T ss_pred EccccccCCC
Confidence 7654222555
No 316
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.21 E-value=1.1e-05 Score=84.69 Aligned_cols=108 Identities=24% Similarity=0.235 Sum_probs=67.4
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
.|++ +|-+|+|||||+++|....-. .|...+ .|+....-+..+. ..
T Consensus 198 dvGL---VG~PNAGKSTLL~als~AKpk-----Va~YaF-----------TTL~P~iG~v~yd---------------df 243 (366)
T KOG1489|consen 198 DVGL---VGFPNAGKSTLLNALSRAKPK-----VAHYAF-----------TTLRPHIGTVNYD---------------DF 243 (366)
T ss_pred ccce---ecCCCCcHHHHHHHhhccCCc-----ccccce-----------eeeccccceeecc---------------cc
Confidence 5677 999999999999999322111 232111 1333333333333 13
Q ss_pred eeEEEEcCCCcc-----------chHHHHHHHHHhcCEEEEEEeCCCC---cchhHH-HHHHHHHh-----CCCceEEEE
Q 003378 90 YLINLIDSPGHV-----------DFSSEVTAALRITDGALVVVDCIEG---VCVQTE-TVLRQALG-----ERIRPVLTV 149 (824)
Q Consensus 90 ~~i~liDTPGh~-----------df~~e~~~~l~~~D~avlvvd~~~g---v~~~t~-~~l~~~~~-----~~~p~ilvi 149 (824)
..+.+-|-||.. +|...++ -|+..++|||.+.+ --.+.. .+|..+.. ...|.++|+
T Consensus 244 ~q~tVADiPGiI~GAh~nkGlG~~FLrHiE----R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVa 319 (366)
T KOG1489|consen 244 SQITVADIPGIIEGAHMNKGLGYKFLRHIE----RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVA 319 (366)
T ss_pred ceeEeccCccccccccccCcccHHHHHHHH----hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEE
Confidence 349999999964 3555554 46999999999977 222222 33333332 355899999
Q ss_pred eCCCcc
Q 003378 150 NKMDRC 155 (824)
Q Consensus 150 NKiD~~ 155 (824)
||||.+
T Consensus 320 NKiD~~ 325 (366)
T KOG1489|consen 320 NKIDLP 325 (366)
T ss_pred eccCch
Confidence 999996
No 317
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.21 E-value=2.2e-05 Score=81.00 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=67.9
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
++|.+ +|..|+||||+.+.||.....-.. .+ ....|.........+.
T Consensus 1 l~Ill---lG~tGsGKSs~~N~ilg~~~f~~~--~~------------~~~~t~~~~~~~~~~~---------------- 47 (212)
T PF04548_consen 1 LRILL---LGKTGSGKSSLGNSILGKEVFKSG--SS------------AKSVTQECQKYSGEVD---------------- 47 (212)
T ss_dssp EEEEE---ECSTTSSHHHHHHHHHTSS-SS----TT------------TSS--SS-EEEEEEET----------------
T ss_pred CEEEE---ECCCCCCHHHHHHHHhcccceeec--cc------------cCCcccccceeeeeec----------------
Confidence 46788 999999999999999654432111 00 0122333333333443
Q ss_pred ceeEEEEcCCCccc-------hHHHHHHHH----HhcCEEEEEEeCCCCcchhHHHHHHHHHhC-C----CceEEEEeCC
Q 003378 89 EYLINLIDSPGHVD-------FSSEVTAAL----RITDGALVVVDCIEGVCVQTETVLRQALGE-R----IRPVLTVNKM 152 (824)
Q Consensus 89 ~~~i~liDTPGh~d-------f~~e~~~~l----~~~D~avlvvd~~~gv~~~t~~~l~~~~~~-~----~p~ilviNKi 152 (824)
+..+++|||||..| ...++..++ ...+++|+|+... ......+..++.+.+. + .-.||+++..
T Consensus 48 g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~ 126 (212)
T PF04548_consen 48 GRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHA 126 (212)
T ss_dssp TEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEG
T ss_pred ceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhc
Confidence 78999999999654 234444444 3468899999987 6666666777655431 2 2367888888
Q ss_pred Ccc
Q 003378 153 DRC 155 (824)
Q Consensus 153 D~~ 155 (824)
|..
T Consensus 127 d~~ 129 (212)
T PF04548_consen 127 DEL 129 (212)
T ss_dssp GGG
T ss_pred ccc
Confidence 876
No 318
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.21 E-value=1.8e-06 Score=88.39 Aligned_cols=88 Identities=22% Similarity=0.299 Sum_probs=58.3
Q ss_pred ceeEEEEcCCCccchHHH------HHHHHH--hcCEEEEEEeCCCCcchhHH--HHHH---HHHhCCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSE------VTAALR--ITDGALVVVDCIEGVCVQTE--TVLR---QALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e------~~~~l~--~~D~avlvvd~~~gv~~~t~--~~l~---~~~~~~~p~ilviNKiD~~ 155 (824)
.+.+.+|||||+..-... ..-++. .--.++.|||....-.+.|- .++. .+.+.++|.|++.||.|..
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~ 194 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVS 194 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEeccccc
Confidence 367899999999763221 112222 22356788997765555554 2333 3457899999999999998
Q ss_pred hhcccCCHHHHHHHHHHHHHH
Q 003378 156 FLELQVDGEEAYQTFQKVIEN 176 (824)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~ 176 (824)
..++-..+.+-++.|++.+++
T Consensus 195 d~~fa~eWm~DfE~FqeAl~~ 215 (366)
T KOG1532|consen 195 DSEFALEWMTDFEAFQEALNE 215 (366)
T ss_pred ccHHHHHHHHHHHHHHHHHHh
Confidence 556556666777777777664
No 319
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=4e-06 Score=92.64 Aligned_cols=107 Identities=26% Similarity=0.322 Sum_probs=84.7
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHc-C-CcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAA-G-IIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG 83 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~-g-~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 83 (824)
+.++-|++ +|++|.|||||+.+|..+- . .++. ..| -||+-+
T Consensus 67 PPPfIvav---vGPpGtGKsTLirSlVrr~tk~ti~~-i~G--------------PiTvvs------------------- 109 (1077)
T COG5192 67 PPPFIVAV---VGPPGTGKSTLIRSLVRRFTKQTIDE-IRG--------------PITVVS------------------- 109 (1077)
T ss_pred CCCeEEEe---ecCCCCChhHHHHHHHHHHHHhhhhc-cCC--------------ceEEee-------------------
Confidence 56677888 9999999999999996321 1 2222 122 244422
Q ss_pred ccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceE-EEEeCCCcc
Q 003378 84 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (824)
Q Consensus 84 ~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~i-lviNKiD~~ 155 (824)
++..+|+|+.|| .| ...++....++|.++|+||+.-|....|.+.+..+...+.|.| -|++.+|+.
T Consensus 110 ---gK~RRiTflEcp--~D-l~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlf 176 (1077)
T COG5192 110 ---GKTRRITFLECP--SD-LHQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLF 176 (1077)
T ss_pred ---cceeEEEEEeCh--HH-HHHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccc
Confidence 357899999999 34 4577888899999999999999999999999999999999988 589999987
No 320
>PTZ00099 rab6; Provisional
Probab=98.19 E-value=4.2e-06 Score=83.65 Aligned_cols=69 Identities=23% Similarity=0.266 Sum_probs=53.7
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHh---CCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~~---~~~p~ilviNKiD~~ 155 (824)
++...++||||||+..|.......++.+|++|+|+|.+.....+....| ..+.. .++|+|||.||+|+.
T Consensus 26 ~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~ 98 (176)
T PTZ00099 26 EGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLG 98 (176)
T ss_pred CEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 3468899999999999999889999999999999999886444433333 22222 356788999999986
No 321
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.13 E-value=8.4e-06 Score=89.56 Aligned_cols=134 Identities=13% Similarity=0.154 Sum_probs=68.6
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
..+++||| +|..|+|||||+|+|..-.. ..+.....|.+-... ....|.
T Consensus 33 ~~~l~IaV---~G~sGsGKSSfINalrGl~~--------------~d~~aA~tGv~etT~-~~~~Y~------------- 81 (376)
T PF05049_consen 33 NAPLNIAV---TGESGSGKSSFINALRGLGH--------------EDEGAAPTGVVETTM-EPTPYP------------- 81 (376)
T ss_dssp H--EEEEE---EESTTSSHHHHHHHHTT--T--------------TSTTS--SSSHSCCT-S-EEEE-------------
T ss_pred cCceEEEE---ECCCCCCHHHHHHHHhCCCC--------------CCcCcCCCCCCcCCC-CCeeCC-------------
Confidence 56789999 99999999999999932111 001111222221111 111222
Q ss_pred CCCceeEEEEcCCCcc--chHHHH---HHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcc-
Q 003378 86 QGNEYLINLIDSPGHV--DFSSEV---TAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLEL- 159 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~--df~~e~---~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~- 159 (824)
..+.-.+.|||.||.- +|..+- ...+..-|..|++.+. -.......+++.+.++++|..+|-+|+|..+..-
T Consensus 82 ~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~--rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~ 159 (376)
T PF05049_consen 82 HPKFPNVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSE--RFTENDVQLAKEIQRMGKKFYFVRTKVDSDLYNER 159 (376)
T ss_dssp -SS-TTEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESS--S--HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHH
T ss_pred CCCCCCCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCC--CCchhhHHHHHHHHHcCCcEEEEEecccccHhhhh
Confidence 0123368999999963 343221 1135677987766553 3445555677889999999999999999854433
Q ss_pred -----cCCHHHHHHHHHH
Q 003378 160 -----QVDGEEAYQTFQK 172 (824)
Q Consensus 160 -----~~~~~~~~~~~~~ 172 (824)
..+.+++.+.+++
T Consensus 160 ~~~p~~f~~e~~L~~IR~ 177 (376)
T PF05049_consen 160 RRKPRTFNEEKLLQEIRE 177 (376)
T ss_dssp CC-STT--HHTHHHHHHH
T ss_pred ccCCcccCHHHHHHHHHH
Confidence 2344444444443
No 322
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.11 E-value=1.2e-06 Score=91.58 Aligned_cols=65 Identities=17% Similarity=0.111 Sum_probs=36.5
Q ss_pred eEEEEcCCCccchHHHHHHHH------H--hcCEEEEEEeCCCCcchhHH--H---HHHHHHhCCCceEEEEeCCCcc
Q 003378 91 LINLIDSPGHVDFSSEVTAAL------R--ITDGALVVVDCIEGVCVQTE--T---VLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 91 ~i~liDTPGh~df~~e~~~~l------~--~~D~avlvvd~~~gv~~~t~--~---~l~~~~~~~~p~ilviNKiD~~ 155 (824)
.+.|+||||+.+|.......- . ..=++|+++|+.-=-.+..- . .+....+.++|.|.|+||+|+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~ 169 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLL 169 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcc
Confidence 788999999988765433332 2 33478899998743222211 1 1122345799999999999998
No 323
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=2.4e-05 Score=71.78 Aligned_cols=114 Identities=18% Similarity=0.130 Sum_probs=73.5
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
++..| +|..|+|||.|+..+....-..+- | +-|.+.....-++. .++
T Consensus 12 fkyii---igdmgvgkscllhqftekkfmadc------------p----htigvefgtriiev--------------sgq 58 (215)
T KOG0097|consen 12 FKYII---IGDMGVGKSCLLHQFTEKKFMADC------------P----HTIGVEFGTRIIEV--------------SGQ 58 (215)
T ss_pred EEEEE---EccccccHHHHHHHHHHHHHhhcC------------C----cccceecceeEEEe--------------cCc
Confidence 45667 899999999999988322211111 0 01222222222222 345
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHhC---CCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALGE---RIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~~~---~~p~ilviNKiD~~ 155 (824)
..++.+|||+|+..|..-+.+..|.+-||++|.|.+.--......-| .-+... +.-++++.||.|+.
T Consensus 59 kiklqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle 129 (215)
T KOG0097|consen 59 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 129 (215)
T ss_pred EEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhh
Confidence 67899999999999999999999999999999998754333333333 223332 23355789999986
No 324
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.09 E-value=4.4e-05 Score=81.90 Aligned_cols=124 Identities=16% Similarity=0.245 Sum_probs=70.4
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
.++|.+ +|..|.|||||++.|+........ ...+.......+..++...... ... ++
T Consensus 4 ~fnImV---vG~sG~GKTTFIntL~~~~~~~~~------~~~~~~~~~~~~~~~i~~~~~~--l~e------------~~ 60 (281)
T PF00735_consen 4 NFNIMV---VGESGLGKTTFINTLFNSDIISED------SSIPPPSASISRTLEIEERTVE--LEE------------NG 60 (281)
T ss_dssp EEEEEE---EECTTSSHHHHHHHHHTSS---------------S------SCEEEEEEEEE--EEE------------TC
T ss_pred eEEEEE---ECCCCCCHHHHHHHHHhccccccc------ccccccccccccccceeeEEEE--ecc------------CC
Confidence 467888 999999999999999653322111 0011111112233334333222 221 23
Q ss_pred CceeEEEEcCCCccch-------------HHHH-HHHH-------------HhcCEEEEEEeCC-CCcchhHHHHHHHHH
Q 003378 88 NEYLINLIDSPGHVDF-------------SSEV-TAAL-------------RITDGALVVVDCI-EGVCVQTETVLRQAL 139 (824)
Q Consensus 88 ~~~~i~liDTPGh~df-------------~~e~-~~~l-------------~~~D~avlvvd~~-~gv~~~t~~~l~~~~ 139 (824)
....+++|||||+-|. ..+- ...+ ...|+||..++++ .|+.+.....++.+
T Consensus 61 ~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~L- 139 (281)
T PF00735_consen 61 VKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRL- 139 (281)
T ss_dssp EEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHH-
T ss_pred cceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHh-
Confidence 4678999999997541 1110 1111 1357899999986 68888887777665
Q ss_pred hCCCceEEEEeCCCcc
Q 003378 140 GERIRPVLTVNKMDRC 155 (824)
Q Consensus 140 ~~~~p~ilviNKiD~~ 155 (824)
...+++|-||.|.|..
T Consensus 140 s~~vNvIPvIaKaD~l 155 (281)
T PF00735_consen 140 SKRVNVIPVIAKADTL 155 (281)
T ss_dssp TTTSEEEEEESTGGGS
T ss_pred cccccEEeEEeccccc
Confidence 4568899999999986
No 325
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.07 E-value=1.5e-05 Score=82.26 Aligned_cols=114 Identities=16% Similarity=0.134 Sum_probs=82.1
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
+...+++ .|..++|||+|++.++........ ++. ..|-|..... |.
T Consensus 135 ~~pe~~~---~g~SNVGKSSLln~~~r~k~~~~t---~k~----------K~g~Tq~in~----f~-------------- 180 (320)
T KOG2486|consen 135 KRPELAF---YGRSNVGKSSLLNDLVRVKNIADT---SKS----------KNGKTQAINH----FH-------------- 180 (320)
T ss_pred CCceeee---ecCCcccHHHHHhhhhhhhhhhhh---cCC----------CCccceeeee----ee--------------
Confidence 4478888 999999999999999643322111 100 1222322221 11
Q ss_pred CCceeEEEEcCCCc----------cchHHHHHHHHH---hcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCC
Q 003378 87 GNEYLINLIDSPGH----------VDFSSEVTAALR---ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 153 (824)
Q Consensus 87 ~~~~~i~liDTPGh----------~df~~e~~~~l~---~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD 153 (824)
.+..+.++|.||+ .||..-+..++. ..=-+++++|++-++++.+-..+..+.+.++|..+|+||||
T Consensus 181 -v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~D 259 (320)
T KOG2486|consen 181 -VGKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCD 259 (320)
T ss_pred -ccceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhh
Confidence 2668999999992 456666666664 33357789999999999999999999999999999999999
Q ss_pred cc
Q 003378 154 RC 155 (824)
Q Consensus 154 ~~ 155 (824)
+.
T Consensus 260 K~ 261 (320)
T KOG2486|consen 260 KQ 261 (320)
T ss_pred hh
Confidence 86
No 326
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=2.6e-05 Score=74.22 Aligned_cols=70 Identities=14% Similarity=0.092 Sum_probs=52.7
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchh-HHHHHHHH----HhCCCceEEEEeCCCcchhcccCC
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQA----LGERIRPVLTVNKMDRCFLELQVD 162 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~-t~~~l~~~----~~~~~p~ilviNKiD~~~~~~~~~ 162 (824)
+.+++-+|--||..-..-...+...+|++|++||+.+--..+ .+..++.+ .-.++|+++..||+|++ ++.
T Consensus 63 ~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p----~a~ 137 (193)
T KOG0077|consen 63 GMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIP----YAA 137 (193)
T ss_pred CceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCC----Ccc
Confidence 678899999999887777777888999999999998642222 22222222 23689999999999999 775
No 327
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.96 E-value=2.2e-05 Score=86.87 Aligned_cols=67 Identities=19% Similarity=0.129 Sum_probs=48.9
Q ss_pred ceeEEEEcCCCcc---chHHHHHHHHHhcCE---EEEEEeCCCCcchhHHHHHHHHHhCCCce-------EEEEeCCCcc
Q 003378 89 EYLINLIDSPGHV---DFSSEVTAALRITDG---ALVVVDCIEGVCVQTETVLRQALGERIRP-------VLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~---df~~e~~~~l~~~D~---avlvvd~~~gv~~~t~~~l~~~~~~~~p~-------ilviNKiD~~ 155 (824)
++.+.||||||.. ++..+....+..++. .+||++++.+....+..++.+....++|. =++++|+|-.
T Consensus 215 ~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt 294 (374)
T PRK14722 215 NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA 294 (374)
T ss_pred CCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence 5688999999976 555566666655544 49999999988877777776665544432 3788999976
No 328
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=97.95 E-value=5.9e-05 Score=65.39 Aligned_cols=79 Identities=24% Similarity=0.326 Sum_probs=57.5
Q ss_pred CeEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEE
Q 003378 367 PLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM 446 (824)
Q Consensus 367 p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai 446 (824)
||.++|..++..+ .|. +..+||.+|++++||.|++++.+ . ..+|+.|... ..++++|.|||.+++
T Consensus 1 p~r~~V~~v~~~~-~g~-vv~G~v~~G~i~~Gd~v~i~P~~----~-----~~~V~si~~~----~~~~~~a~aGd~v~~ 65 (83)
T cd03698 1 PFRLPISDKYKDQ-GGT-VVSGKVESGSIQKGDTLLVMPSK----E-----SVEVKSIYVD----DEEVDYAVAGENVRL 65 (83)
T ss_pred CeEEEEEeEEEcC-CCc-EEEEEEeeeEEeCCCEEEEeCCC----c-----EEEEEEEEEC----CeECCEECCCCEEEE
Confidence 5667777777655 665 89999999999999999986532 2 2688888653 478999999999985
Q ss_pred --eccccccccce-eee
Q 003378 447 --VGLDQYITKNA-TLT 460 (824)
Q Consensus 447 --~gl~~~~~~tg-Tl~ 460 (824)
.+++....+.| .||
T Consensus 66 ~l~~~~~~~v~~G~vl~ 82 (83)
T cd03698 66 KLKGIDEEDISPGDVLC 82 (83)
T ss_pred EECCCCHHHCCCCCEEe
Confidence 45543223456 554
No 329
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.93 E-value=0.00012 Score=73.30 Aligned_cols=66 Identities=23% Similarity=0.180 Sum_probs=55.7
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
..+.+.+|||||... ..+..++..+|.+++|+.+...-.......++.+.+.++|..+|+||+|..
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~ 156 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLN 156 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 578999999997654 466778899999999999987766677788888888899988999999975
No 330
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=2.2e-05 Score=75.28 Aligned_cols=118 Identities=17% Similarity=0.110 Sum_probs=80.7
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHH-HcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVA-AAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~-~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
....|.| +|.-+|||||+++++=. .++.... ++ +. +---|+.....+....
T Consensus 16 e~y~vlI---lgldnAGKttfLe~~Kt~~~~~~~~--------l~--~~--ki~~tvgLnig~i~v~------------- 67 (197)
T KOG0076|consen 16 EDYSVLI---LGLDNAGKTTFLEALKTDFSKAYGG--------LN--PS--KITPTVGLNIGTIEVC------------- 67 (197)
T ss_pred hhhhhee---eccccCCchhHHHHHHHHHHhhhcC--------CC--HH--Heecccceeecceeec-------------
Confidence 4456778 99999999999999831 1111100 00 00 0012334444444443
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCC-----cchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-----VCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~g-----v~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+..++|||--|+.....-.......++++++||||.+. ...+-+.+..+=...++|+++.+||-|+.
T Consensus 68 ---~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q 139 (197)
T KOG0076|consen 68 ---NAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQ 139 (197)
T ss_pred ---cceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhh
Confidence 56899999999999888888899999999999999973 22223344444456799999999999998
No 331
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=97.90 E-value=0.00021 Score=82.75 Aligned_cols=115 Identities=17% Similarity=0.173 Sum_probs=65.4
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
.+++|++ +|.+|+|||||+|+|+......... .+ .+ |.........+.
T Consensus 117 fslrIvL---VGKTGVGKSSLINSILGekvf~vss-~~-------------~~-TTr~~ei~~~id-------------- 164 (763)
T TIGR00993 117 FSLNILV---LGKSGVGKSATINSIFGEVKFSTDA-FG-------------MG-TTSVQEIEGLVQ-------------- 164 (763)
T ss_pred cceEEEE---ECCCCCCHHHHHHHHhccccccccC-CC-------------CC-ceEEEEEEEEEC--------------
Confidence 4578999 9999999999999997554322211 00 01 112112222232
Q ss_pred CCceeEEEEcCCCccchH------HHHHH----HHH--hcCEEEEEEeCCC-CcchhHHHHHHHHHh-----CCCceEEE
Q 003378 87 GNEYLINLIDSPGHVDFS------SEVTA----ALR--ITDGALVVVDCIE-GVCVQTETVLRQALG-----ERIRPVLT 148 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~------~e~~~----~l~--~~D~avlvvd~~~-gv~~~t~~~l~~~~~-----~~~p~ilv 148 (824)
+..+++|||||..+.. .++.. .+. ..|++|+|+.... ........+++.+.+ .-.-.|||
T Consensus 165 --G~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVV 242 (763)
T TIGR00993 165 --GVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVT 242 (763)
T ss_pred --CceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEE
Confidence 6789999999987632 22222 333 3677777765431 111123334444421 12246899
Q ss_pred EeCCCcc
Q 003378 149 VNKMDRC 155 (824)
Q Consensus 149 iNKiD~~ 155 (824)
++..|..
T Consensus 243 FThgD~l 249 (763)
T TIGR00993 243 LTHAASA 249 (763)
T ss_pred EeCCccC
Confidence 9999987
No 332
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=97.88 E-value=9.2e-05 Score=65.38 Aligned_cols=84 Identities=19% Similarity=0.294 Sum_probs=62.9
Q ss_pred CCCeEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEE
Q 003378 365 EGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTV 444 (824)
Q Consensus 365 ~~p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIv 444 (824)
+.||.+.|..++.....|. +..+||.+|+++.||++++++.+ . ..+|++|... ..++++|.|||.+
T Consensus 2 ~~p~r~~V~~vf~~~g~g~-vv~G~v~~G~i~~gd~v~i~P~~----~-----~~~V~sI~~~----~~~~~~a~aG~~v 67 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGT-VPVGRVETGVLKPGMVVTFAPAG----V-----TGEVKSVEMH----HEPLEEALPGDNV 67 (91)
T ss_pred CCCeEEEEEEEEEeCCceE-EEEEEEecceeecCCEEEECCCC----c-----EEEEEEEEEC----CcCcCEECCCCEE
Confidence 3588888888887666675 88999999999999999987532 1 2688888753 4568999999999
Q ss_pred EEe--ccccccccce-eeecC
Q 003378 445 AMV--GLDQYITKNA-TLTNE 462 (824)
Q Consensus 445 ai~--gl~~~~~~tg-Tl~~~ 462 (824)
++. +++....+.| .||+.
T Consensus 68 ~i~l~~i~~~~v~~G~vl~~~ 88 (91)
T cd03693 68 GFNVKNVSKKDIKRGDVAGDS 88 (91)
T ss_pred EEEECCCCHHHcCCcCEEccC
Confidence 874 5444334567 66654
No 333
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.88 E-value=6.1e-05 Score=77.33 Aligned_cols=137 Identities=14% Similarity=0.096 Sum_probs=67.4
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccc--cCCce-eecCChhhHhHhccceeeceEEEEEeechhhhhccccc
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE--VAGDV-RMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~--~~g~~-~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (824)
...|++ +|+.|+|||||+++|+...+.-.+. ..|+. .-.|....+ +.|..+..-...+.+........+....
T Consensus 22 ~~~i~~---~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~-~~~~~~~~l~~gcic~~~~~~~~~~l~~ 97 (207)
T TIGR00073 22 LVVLNF---MSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLR-KYGAPAIQINTGKECHLDAHMVAHALED 97 (207)
T ss_pred cEEEEE---ECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHH-HcCCcEEEEcCCCcccCChHHHHHHHHH
Confidence 467788 9999999999999998764321110 01111 112221111 2232110000000000000000011111
Q ss_pred cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
....+..+.||+|.|..-... ......+..+.|+|+..+..... ......+.|.++++||+|+.
T Consensus 98 ~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~----~~~~~~~~a~iiv~NK~Dl~ 161 (207)
T TIGR00073 98 LPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL----KYPGMFKEADLIVINKADLA 161 (207)
T ss_pred hccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh----hhHhHHhhCCEEEEEHHHcc
Confidence 222245788999999321100 11123466678999987654322 22233457889999999997
No 334
>PTZ00258 GTP-binding protein; Provisional
Probab=97.86 E-value=5.1e-05 Score=84.40 Aligned_cols=99 Identities=16% Similarity=0.115 Sum_probs=58.6
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechh-hhhcccccc
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDA-ALKSYRGER 85 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~-~~~~~~~~~ 85 (824)
...+|+| +|.+++|||||.++|....-.+.. -. +.|++.....+.+..... .+....++.
T Consensus 20 ~~~kvgI---VG~PNvGKSTLfnaLt~~~~~v~n-~p---------------ftTi~p~~g~v~~~d~r~~~l~~~~~~~ 80 (390)
T PTZ00258 20 NNLKMGI---VGLPNVGKSTTFNALCKQQVPAEN-FP---------------FCTIDPNTARVNVPDERFDWLCKHFKPK 80 (390)
T ss_pred CCcEEEE---ECCCCCChHHHHHHHhcCcccccC-CC---------------CCcccceEEEEecccchhhHHHHHcCCc
Confidence 4568999 999999999999999322211111 01 234444444343321000 000111111
Q ss_pred CCCceeEEEEcCCCccc-------hHHHHHHHHHhcCEEEEEEeCC
Q 003378 86 QGNEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCI 124 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~d-------f~~e~~~~l~~~D~avlvvd~~ 124 (824)
.-....+.|+||||... ........++.+|++++|||+.
T Consensus 81 ~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 81 SIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred ccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 12244689999999642 4446677889999999999985
No 335
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.00019 Score=76.54 Aligned_cols=79 Identities=16% Similarity=0.299 Sum_probs=63.0
Q ss_pred ceeEEEEcCCCc-----------cchHHHHHHHHHhcCEEEEEEeCCC-CcchhHHHHHHHHHhCCCceEEEEeCCCcch
Q 003378 89 EYLINLIDSPGH-----------VDFSSEVTAALRITDGALVVVDCIE-GVCVQTETVLRQALGERIRPVLTVNKMDRCF 156 (824)
Q Consensus 89 ~~~i~liDTPGh-----------~df~~e~~~~l~~~D~avlvvd~~~-gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~ 156 (824)
-..|++|||||. -||..-...-+.-+|.+++++|+-. .+...+++++.++....-++=+|+||.|.+
T Consensus 146 Le~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~EdkiRVVLNKADqV- 224 (532)
T KOG1954|consen 146 LESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKIRVVLNKADQV- 224 (532)
T ss_pred hhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcceeEEEecccccc-
Confidence 347999999995 3688777777889999999999875 688899999999887777888999999987
Q ss_pred hcccCCHHHHHHHHHHH
Q 003378 157 LELQVDGEEAYQTFQKV 173 (824)
Q Consensus 157 ~~~~~~~~~~~~~~~~~ 173 (824)
+++++....-.+
T Consensus 225 -----dtqqLmRVyGAL 236 (532)
T KOG1954|consen 225 -----DTQQLMRVYGAL 236 (532)
T ss_pred -----CHHHHHHHHHHH
Confidence 555544433333
No 336
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.84 E-value=3.1e-05 Score=70.29 Aligned_cols=59 Identities=19% Similarity=0.111 Sum_probs=42.4
Q ss_pred EEcCCC----ccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 94 LIDSPG----HVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 94 liDTPG----h~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
.||||| |..+-......+..+|..++|-.+.++-+.-.-.. +.-...|+|-+|+|.|+.
T Consensus 41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f---~~~~~k~vIgvVTK~DLa 103 (148)
T COG4917 41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFPPGF---LDIGVKKVIGVVTKADLA 103 (148)
T ss_pred ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCCccc---ccccccceEEEEeccccc
Confidence 499999 44454556667788999999999988755443322 223455788999999997
No 337
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=97.78 E-value=6.1e-05 Score=80.19 Aligned_cols=96 Identities=21% Similarity=0.190 Sum_probs=54.0
Q ss_pred EEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechh-hhhccccccCCCc
Q 003378 11 VCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDA-ALKSYRGERQGNE 89 (824)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (824)
|+| +|.+++|||||.++|....-.+ + ++ -+.|++.....+.+..... .+....++..--.
T Consensus 1 igi---vG~PN~GKSTLfn~Lt~~~~~~-----~-----n~------pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~ 61 (274)
T cd01900 1 IGI---VGLPNVGKSTLFNALTKAGAEA-----A-----NY------PFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVP 61 (274)
T ss_pred CeE---eCCCCCcHHHHHHHHhCCCCcc-----c-----cc------cccchhceeeeEEeccchhhhHHHHhCCceeee
Confidence 466 9999999999999994322211 1 00 1234444333333321000 0000001111112
Q ss_pred eeEEEEcCCCccc-------hHHHHHHHHHhcCEEEEEEeCCC
Q 003378 90 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 125 (824)
Q Consensus 90 ~~i~liDTPGh~d-------f~~e~~~~l~~~D~avlvvd~~~ 125 (824)
..+.|+||||..+ +.......++.+|+++.|||+.+
T Consensus 62 ~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 62 ATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred eEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 3699999999643 34456677899999999999853
No 338
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.77 E-value=0.00014 Score=72.27 Aligned_cols=66 Identities=18% Similarity=0.250 Sum_probs=42.1
Q ss_pred CceeEEEEcCCCccch----HHHHHHHHH--hcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDF----SSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df----~~e~~~~l~--~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
.++.+.+|||||...+ ..++..... ..|.+++|+|+..+-... ...+.+....+ ..-+++||+|..
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~-~~~~~~~~~~~-~~~viltk~D~~ 152 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAV-NQAKAFNEALG-ITGVILTKLDGD 152 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHH-HHHHHHHhhCC-CCEEEEECCcCC
Confidence 4677889999998643 333322222 389999999997543322 33444444445 345888999986
No 339
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=97.75 E-value=0.00012 Score=80.61 Aligned_cols=98 Identities=21% Similarity=0.207 Sum_probs=57.0
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechh-hhhccccccCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDA-ALKSYRGERQG 87 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~-~~~~~~~~~~~ 87 (824)
++|+| +|.+++|||||.++|....-.+ + ++ .+.|++.....+.+..... .+....++...
T Consensus 3 ~~vgI---VG~PNvGKSTLfnaLt~~~~~v-----~-----ny------pftTi~p~~G~~~v~d~r~~~l~~~~~p~~~ 63 (364)
T PRK09601 3 LKCGI---VGLPNVGKSTLFNALTKAGAEA-----A-----NY------PFCTIEPNVGVVPVPDPRLDKLAEIVKPKKI 63 (364)
T ss_pred cEEEE---ECCCCCCHHHHHHHHhCCCCee-----c-----cc------ccccccceEEEEEeccccchhhHHhcCCccc
Confidence 57888 9999999999999994322111 1 10 1234444433333321000 01111111111
Q ss_pred CceeEEEEcCCCccc-------hHHHHHHHHHhcCEEEEEEeCCC
Q 003378 88 NEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 125 (824)
Q Consensus 88 ~~~~i~liDTPGh~d-------f~~e~~~~l~~~D~avlvvd~~~ 125 (824)
....+.|+||||..+ +.......++.+|+++.|||+.+
T Consensus 64 ~~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 64 VPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred cCceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 224699999999643 33456777899999999999963
No 340
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.74 E-value=6.6e-05 Score=72.70 Aligned_cols=59 Identities=19% Similarity=0.179 Sum_probs=42.1
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCC
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 153 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD 153 (824)
.++.+.||||||.. ......++.+|-+|+|+.+..+........ .-...--+++|||+|
T Consensus 90 ~~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~----~~~~~~~~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAGDDIQAIKA----GIMEIADIVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCchhHHHHhhh----hHhhhcCEEEEeCCC
Confidence 47899999999964 344569999999999998874433333322 223334589999998
No 341
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.72 E-value=0.00031 Score=74.91 Aligned_cols=108 Identities=22% Similarity=0.194 Sum_probs=66.9
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
-|++ +|-+++|||||+.++....-. .+...++- ++-...++.. . .+
T Consensus 161 DVGL---VG~PNaGKSTlls~vS~AkPK-----IadYpFTT---------L~PnLGvV~~--~---------------~~ 206 (369)
T COG0536 161 DVGL---VGLPNAGKSTLLSAVSAAKPK-----IADYPFTT---------LVPNLGVVRV--D---------------GG 206 (369)
T ss_pred cccc---ccCCCCcHHHHHHHHhhcCCc-----ccCCcccc---------ccCcccEEEe--c---------------CC
Confidence 4677 999999999999999332211 22111110 1223334433 1 25
Q ss_pred eeEEEEcCCCcc-----------chHHHHHHHHHhcCEEEEEEeCCCCc----chhHHHHHHHHHh-----CCCceEEEE
Q 003378 90 YLINLIDSPGHV-----------DFSSEVTAALRITDGALVVVDCIEGV----CVQTETVLRQALG-----ERIRPVLTV 149 (824)
Q Consensus 90 ~~i~liDTPGh~-----------df~~e~~~~l~~~D~avlvvd~~~gv----~~~t~~~l~~~~~-----~~~p~ilvi 149 (824)
..+.+-|.||.. +|...+++ +-..+.|||...-- ...-..++..+.+ ...|.++|+
T Consensus 207 ~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER----t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~ 282 (369)
T COG0536 207 ESFVVADIPGLIEGASEGVGLGLRFLRHIER----TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVL 282 (369)
T ss_pred CcEEEecCcccccccccCCCccHHHHHHHHh----hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEE
Confidence 679999999964 57666666 46778899987432 2222334444433 367999999
Q ss_pred eCCCcc
Q 003378 150 NKMDRC 155 (824)
Q Consensus 150 NKiD~~ 155 (824)
||||.+
T Consensus 283 NKiD~~ 288 (369)
T COG0536 283 NKIDLP 288 (369)
T ss_pred eccCCC
Confidence 999976
No 342
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.65 E-value=0.00011 Score=80.06 Aligned_cols=63 Identities=19% Similarity=0.145 Sum_probs=42.3
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+..++.+.||||||... .....+..+|.++++.++..|...+.. ... -..+|.++|+||+|++
T Consensus 123 ~~~g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~~~el~~~---~~~-l~~~~~ivv~NK~Dl~ 185 (300)
T TIGR00750 123 DAAGYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGTGDDLQGI---KAG-LMEIADIYVVNKADGE 185 (300)
T ss_pred HhCCCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCccHHHHHH---HHH-HhhhccEEEEEccccc
Confidence 34588999999999653 222357788998888765544322211 111 2467889999999998
No 343
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=97.60 E-value=0.00045 Score=64.88 Aligned_cols=117 Identities=19% Similarity=0.258 Sum_probs=80.4
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceee-ceEEEEEeechhhhhcccccc
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKS-TGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~-~~~~~~~~~~~~~~~~~~~~~ 85 (824)
+..+|.+ .|.-++|||.++++|+|-+..+.... .-||.- -..+++..
T Consensus 8 k~~kVvV---cG~k~VGKTaileQl~yg~~~~~~e~----------------~pTiEDiY~~svet~------------- 55 (198)
T KOG3883|consen 8 KVCKVVV---CGMKSVGKTAILEQLLYGNHVPGTEL----------------HPTIEDIYVASVETD------------- 55 (198)
T ss_pred cceEEEE---ECCccccHHHHHHHHHhccCCCCCcc----------------ccchhhheeEeeecC-------------
Confidence 3457888 89999999999999999877654321 112321 12233322
Q ss_pred CCCceeEEEEcCCCccchHHHH-HHHHHhcCEEEEEEeCCCCcchhHHHHHHHHH-----hCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEV-TAALRITDGALVVVDCIEGVCVQTETVLRQAL-----GERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~-~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~-----~~~~p~ilviNKiD~~ 155 (824)
.+-...+.|-||.|-.+.-.|. ..++..+|+.|||.|..+--..|-...++.-. +.-+|+++..||.|+.
T Consensus 56 rgarE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~ 131 (198)
T KOG3883|consen 56 RGAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRA 131 (198)
T ss_pred CChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcc
Confidence 2234578899999998875454 45668899999999988765666555554322 3457899999999995
No 344
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.00014 Score=70.94 Aligned_cols=116 Identities=17% Similarity=0.171 Sum_probs=79.6
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
-+.+.++ +|.++.||||...+.+ .|.... ..--|+....-.+.+.. +
T Consensus 9 ~~fklvl---vGdgg~gKtt~vkr~l--tgeFe~----------------~y~at~Gv~~~pl~f~t------------n 55 (216)
T KOG0096|consen 9 LTFKLVL---VGDGGTGKTTFVKRHL--TGEFEK----------------TYPATLGVEVHPLLFDT------------N 55 (216)
T ss_pred ceEEEEE---ecCCcccccchhhhhh--ccccee----------------cccCcceeEEeeeeeec------------c
Confidence 3678888 9999999999999984 332222 12234444444444432 2
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HH--HhCCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QA--LGERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~-~~--~~~~~p~ilviNKiD~~ 155 (824)
.+..+++.|||.|.+.|.+---.+.-..-+|++++|...-+..+...-|. -+ ...++|++++.||.|-.
T Consensus 56 ~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~ 127 (216)
T KOG0096|consen 56 RGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIK 127 (216)
T ss_pred cCcEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceecc
Confidence 23589999999999998765555555667899999988766655554442 22 24578999999999965
No 345
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=97.58 E-value=0.00034 Score=66.36 Aligned_cols=112 Identities=21% Similarity=0.247 Sum_probs=74.0
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCccc---ccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQ---EVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~---~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+..+ +|..-+|||+|+..+ ..|.... ...| .|+.. |-|-+ .
T Consensus 9 frliv---igdstvgkssll~~f--t~gkfaelsdptvg----vdffa----rlie~---------~------------- 53 (213)
T KOG0091|consen 9 FRLIV---IGDSTVGKSSLLRYF--TEGKFAELSDPTVG----VDFFA----RLIEL---------R------------- 53 (213)
T ss_pred EEEEE---EcCCcccHHHHHHHH--hcCcccccCCCccc----hHHHH----HHHhc---------C-------------
Confidence 45566 899999999999977 4443322 1112 12111 11111 1
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHH--HhCC---Cc-eEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA--LGER---IR-PVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~--~~~~---~p-~ilviNKiD~~ 155 (824)
.+...++.||||+|++.|..-+.++.|.+=|+++|.|.+.--.....+.|-.- ...+ .+ ..+|..|.|+.
T Consensus 54 pg~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~ 129 (213)
T KOG0091|consen 54 PGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQ 129 (213)
T ss_pred CCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchh
Confidence 12355789999999999999999999999999999999876555555555322 2222 22 23789999986
No 346
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=4.5e-05 Score=71.68 Aligned_cols=67 Identities=27% Similarity=0.200 Sum_probs=50.5
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHH----HhCCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQA----LGERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~----~~~~~p~ilviNKiD~~ 155 (824)
..++.+|||+|++.|..-+..-.|.|=|.++++|-+..-..-..+-| .|+ ..++--+|++.||.|++
T Consensus 66 rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~ 137 (219)
T KOG0081|consen 66 RIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLE 137 (219)
T ss_pred EEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchh
Confidence 34678999999999999998889999999999998765333222222 332 34455578999999998
No 347
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.56 E-value=0.00042 Score=77.99 Aligned_cols=65 Identities=17% Similarity=0.272 Sum_probs=41.4
Q ss_pred CceeEEEEcCCCccc----hHHHHHHHHH--hcCEEEEEEeCCCCcchhHHHHHHHHHhCCC-ceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVD----FSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERI-RPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~d----f~~e~~~~l~--~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~-p~ilviNKiD~~ 155 (824)
.++.+.||||||... ...|+....+ ..|-++||+|+..|-.. ....+... ..+ +.-+++||+|..
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~-~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFK-DSVDVGSVIITKLDGH 252 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHH-hccCCcEEEEECccCC
Confidence 468899999999764 3444444433 35789999999877433 11222222 223 455899999975
No 348
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.56 E-value=0.00016 Score=72.53 Aligned_cols=120 Identities=21% Similarity=0.206 Sum_probs=78.8
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
-+|.+ +|..|+|||++-..+...-..-+. +.-|-||+....++.|- .
T Consensus 5 kKvlL---MGrsGsGKsSmrsiiF~ny~a~D~---------------~rlg~tidveHsh~Rfl---------------G 51 (295)
T KOG3886|consen 5 KKVLL---MGRSGSGKSSMRSIIFANYIARDT---------------RRLGATIDVEHSHVRFL---------------G 51 (295)
T ss_pred ceEEE---eccCCCCccccchhhhhhhhhhhh---------------hccCCcceeeehhhhhh---------------h
Confidence 46778 999999999987766422111111 11245777766666665 2
Q ss_pred ceeEEEEcCCCccchHHHHHH-----HHHhcCEEEEEEeCCCCcchhHH----HHHHHHHhC--CCceEEEEeCCCcchh
Q 003378 89 EYLINLIDSPGHVDFSSEVTA-----ALRITDGALVVVDCIEGVCVQTE----TVLRQALGE--RIRPVLTVNKMDRCFL 157 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~-----~l~~~D~avlvvd~~~gv~~~t~----~~l~~~~~~--~~p~ilviNKiD~~~~ 157 (824)
+-.+|+||+-|+..|+.+..+ ..+..+..+.|+|+...-...+. ..++.+.+. ..++.+++.|||+.
T Consensus 52 nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv-- 129 (295)
T KOG3886|consen 52 NLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLV-- 129 (295)
T ss_pred hheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhc--
Confidence 578999999999988876554 55788999999998764322222 233333332 23456889999998
Q ss_pred cccCCHHH
Q 003378 158 ELQVDGEE 165 (824)
Q Consensus 158 ~~~~~~~~ 165 (824)
..|..+
T Consensus 130 --~~d~r~ 135 (295)
T KOG3886|consen 130 --QEDARE 135 (295)
T ss_pred --ccchHH
Confidence 665443
No 349
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.54 E-value=0.00087 Score=66.63 Aligned_cols=63 Identities=22% Similarity=0.144 Sum_probs=51.1
Q ss_pred eEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCce-EEEEeCCCcc
Q 003378 91 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRC 155 (824)
Q Consensus 91 ~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~-ilviNKiD~~ 155 (824)
.+.+|||||..+. ....++..+|.+|+|+++...-...+...++.+...+.+. .+++|++|..
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~ 127 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPD 127 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCccc
Confidence 6889999987653 5677899999999999998877777777777777766664 4899999875
No 350
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.54 E-value=0.00029 Score=79.25 Aligned_cols=37 Identities=30% Similarity=0.373 Sum_probs=29.3
Q ss_pred ceeEEEEcCCCccc-------hHHHHHHHHHhcCEEEEEEeCCC
Q 003378 89 EYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 125 (824)
Q Consensus 89 ~~~i~liDTPGh~d-------f~~e~~~~l~~~D~avlvvd~~~ 125 (824)
...++|+||||..+ ........++.+|++++|||+..
T Consensus 71 ~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~ 114 (396)
T PRK09602 71 FIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASG 114 (396)
T ss_pred eeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 35789999999642 33366777999999999999974
No 351
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.52 E-value=0.00029 Score=76.92 Aligned_cols=37 Identities=30% Similarity=0.318 Sum_probs=29.1
Q ss_pred ceeEEEEcCCCcc----chHH---HHHHHHHhcCEEEEEEeCCC
Q 003378 89 EYLINLIDSPGHV----DFSS---EVTAALRITDGALVVVDCIE 125 (824)
Q Consensus 89 ~~~i~liDTPGh~----df~~---e~~~~l~~~D~avlvvd~~~ 125 (824)
...+.||||||.. .+.+ .....++.||++++|||+..
T Consensus 68 ~v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 68 YVPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred cceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 4679999999973 3333 45667999999999999974
No 352
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=97.52 E-value=0.00078 Score=58.21 Aligned_cols=65 Identities=23% Similarity=0.236 Sum_probs=48.6
Q ss_pred CeEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEE
Q 003378 367 PLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM 446 (824)
Q Consensus 367 p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai 446 (824)
||.+.|..++... |. +..+||.+|+++.||++++.+.+ . ..+|++|... ..++++|.|||.+++
T Consensus 1 plr~~I~~v~~~~--g~-vv~G~v~~G~i~~G~~v~i~P~~----~-----~~~V~si~~~----~~~~~~a~aGd~v~l 64 (82)
T cd04089 1 PLRLPIIDKYKDM--GT-VVLGKVESGTIKKGDKLLVMPNK----T-----QVEVLSIYNE----DVEVRYARPGENVRL 64 (82)
T ss_pred CeEEEEEeEEEcC--CE-EEEEEEeeeEEecCCEEEEeCCC----c-----EEEEEEEEEC----CEECCEECCCCEEEE
Confidence 4555666655432 55 89999999999999999986532 2 2678888643 478999999999987
Q ss_pred e
Q 003378 447 V 447 (824)
Q Consensus 447 ~ 447 (824)
.
T Consensus 65 ~ 65 (82)
T cd04089 65 R 65 (82)
T ss_pred E
Confidence 4
No 353
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.00012 Score=68.08 Aligned_cols=111 Identities=18% Similarity=0.162 Sum_probs=76.6
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
+..++-+ +|-.|+||||..-+| +.|..+.. .-|+..++..+.++
T Consensus 17 ~e~rili---lgldGaGkttIlyrl--qvgevvtt-----------------kPtigfnve~v~yK-------------- 60 (182)
T KOG0072|consen 17 REMRILI---LGLDGAGKTTILYRL--QVGEVVTT-----------------KPTIGFNVETVPYK-------------- 60 (182)
T ss_pred cceEEEE---eeccCCCeeEEEEEc--ccCccccc-----------------CCCCCcCccccccc--------------
Confidence 5667777 888999999877766 33322220 12444444445453
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchh--HHHHHHHHHhC---CCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ--TETVLRQALGE---RIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~--t~~~l~~~~~~---~~p~ilviNKiD~~ 155 (824)
+-+++++|--|+-....-...+....|.+|+|||..+-.... ..++..++.+. +...++|.||+|..
T Consensus 61 --NLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~ 132 (182)
T KOG0072|consen 61 --NLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYS 132 (182)
T ss_pred --cccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccch
Confidence 788999999999888888899999999999999998753332 22333333332 34567899999988
No 354
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.51 E-value=0.00012 Score=71.62 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=22.4
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
..++|++ +|.+|+|||||+++|+....
T Consensus 101 ~~~~v~~---~G~~nvGKStliN~l~~~~~ 127 (157)
T cd01858 101 KQISVGF---IGYPNVGKSSIINTLRSKKV 127 (157)
T ss_pred cceEEEE---EeCCCCChHHHHHHHhcCCc
Confidence 3577888 99999999999999965443
No 355
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.49 E-value=0.0011 Score=71.51 Aligned_cols=124 Identities=19% Similarity=0.312 Sum_probs=76.4
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
+++|.+ +|..|.||||+++.|+.+.- .+. .+ .-+..+.-.+.++.|......+.- ++
T Consensus 23 ~f~im~---~G~sG~GKttfiNtL~~~~l-~~~--~~---~~~~~~~~~~~~~~i~~~~~~l~e--------------~~ 79 (373)
T COG5019 23 DFTIMV---VGESGLGKTTFINTLFGTSL-VDE--TE---IDDIRAEGTSPTLEIKITKAELEE--------------DG 79 (373)
T ss_pred ceEEEE---ecCCCCchhHHHHhhhHhhc-cCC--CC---ccCcccccCCcceEEEeeeeeeec--------------CC
Confidence 467777 99999999999999987621 111 00 000001002233334433333321 23
Q ss_pred CceeEEEEcCCCccchHHH--------------HHHHH-------H-------hcCEEEEEEeCC-CCcchhHHHHHHHH
Q 003378 88 NEYLINLIDSPGHVDFSSE--------------VTAAL-------R-------ITDGALVVVDCI-EGVCVQTETVLRQA 138 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e--------------~~~~l-------~-------~~D~avlvvd~~-~gv~~~t~~~l~~~ 138 (824)
-...+|+|||||.-||... -..++ | -.++|++.+-++ +|+.+.....++.+
T Consensus 80 ~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~l 159 (373)
T COG5019 80 FHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRL 159 (373)
T ss_pred eEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 4568999999998775432 11111 1 246899989876 68998888877655
Q ss_pred HhCCCceEEEEeCCCcc
Q 003378 139 LGERIRPVLTVNKMDRC 155 (824)
Q Consensus 139 ~~~~~p~ilviNKiD~~ 155 (824)
...+-+|=||-|.|..
T Consensus 160 -s~~vNlIPVI~KaD~l 175 (373)
T COG5019 160 -SKRVNLIPVIAKADTL 175 (373)
T ss_pred -hcccCeeeeeeccccC
Confidence 3556678899999976
No 356
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=97.45 E-value=6.1e-05 Score=68.68 Aligned_cols=70 Identities=20% Similarity=0.226 Sum_probs=55.3
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHH---hCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~---~~~~p~ilviNKiD~~ 155 (824)
+++..++.+|||+|++.|.+-+-...|.+|..+++.|...-.+...-..| .++. +..+...++.||+|+.
T Consensus 43 ~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a 116 (192)
T KOG0083|consen 43 DDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLA 116 (192)
T ss_pred CCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccc
Confidence 45678999999999999999999999999999999998766554444443 2332 4456778999999985
No 357
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.44 E-value=8.1e-05 Score=72.46 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=16.5
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 003378 17 ANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 17 ~G~~~~GKTTL~~~ll~~ 34 (824)
+|++|+|||||+|+|+..
T Consensus 41 ~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 41 LGQSGVGKSSLINALLPE 58 (161)
T ss_dssp ECSTTSSHHHHHHHHHTS
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 899999999999999754
No 358
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.42 E-value=0.00014 Score=75.37 Aligned_cols=73 Identities=21% Similarity=0.290 Sum_probs=47.5
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHH--HHHHHHhCCCceEEEEeCCCcchhcccCCHHH
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET--VLRQALGERIRPVLTVNKMDRCFLELQVDGEE 165 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~--~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~ 165 (824)
-+|.+.||-|-|--. .|+. -...+|..++|+-+..|...|..+ +++. .=|+||||.|+. +++ .
T Consensus 120 aG~D~IiiETVGvGQ--sE~~-I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi------aDi~vVNKaD~~----gA~--~ 184 (266)
T PF03308_consen 120 AGFDVIIIETVGVGQ--SEVD-IADMADTVVLVLVPGLGDEIQAIKAGIMEI------ADIFVVNKADRP----GAD--R 184 (266)
T ss_dssp TT-SEEEEEEESSST--HHHH-HHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------SEEEEE--SHH----HHH--H
T ss_pred cCCCEEEEeCCCCCc--cHHH-HHHhcCeEEEEecCCCccHHHHHhhhhhhh------ccEEEEeCCChH----HHH--H
Confidence 478899999998644 2332 367899999999999888777653 3333 348999999998 553 4
Q ss_pred HHHHHHHHHH
Q 003378 166 AYQTFQKVIE 175 (824)
Q Consensus 166 ~~~~~~~~~~ 175 (824)
.+..++..+.
T Consensus 185 ~~~~l~~~l~ 194 (266)
T PF03308_consen 185 TVRDLRSMLH 194 (266)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4444444443
No 359
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.42 E-value=0.0008 Score=76.17 Aligned_cols=118 Identities=18% Similarity=0.150 Sum_probs=78.4
Q ss_pred CCCceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccc
Q 003378 3 SYCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYR 82 (824)
Q Consensus 3 ~~~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~ 82 (824)
....+.++|.+ +|.-|+|||||+-+|+...-.-.- -++++. |+|-+.+.
T Consensus 4 ~~t~kdVRIvl---iGD~G~GKtSLImSL~~eef~~~V-----P~rl~~--------i~IPadvt--------------- 52 (625)
T KOG1707|consen 4 DETLKDVRIVL---IGDEGVGKTSLIMSLLEEEFVDAV-----PRRLPR--------ILIPADVT--------------- 52 (625)
T ss_pred ccCccceEEEE---ECCCCccHHHHHHHHHhhhccccc-----cccCCc--------cccCCccC---------------
Confidence 34578899999 999999999999999754421100 012221 44432211
Q ss_pred cccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCC-----CcchhHHHHHHHHH--hCCCceEEEEeCCCcc
Q 003378 83 GERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----GVCVQTETVLRQAL--GERIRPVLTVNKMDRC 155 (824)
Q Consensus 83 ~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~-----gv~~~t~~~l~~~~--~~~~p~ilviNKiD~~ 155 (824)
.......++||+-..+-...+..-++.||.+.+|.+..+ +++..=..++++.. -.++|+|+|.||.|..
T Consensus 53 ----Pe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~ 128 (625)
T KOG1707|consen 53 ----PENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNG 128 (625)
T ss_pred ----cCcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCc
Confidence 124458899999877766677888999999999986654 33322223333332 1578999999999986
No 360
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.41 E-value=0.00052 Score=69.97 Aligned_cols=58 Identities=24% Similarity=0.385 Sum_probs=36.9
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCce--EEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP--VLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~--ilviNKiD~~ 155 (824)
+....+|.|-|-. ...... -..+|++|+|+|+.+|...+... ..++.. ++++||+|+.
T Consensus 91 ~~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~~~~~~~~~------~~qi~~ad~~~~~k~d~~ 150 (199)
T TIGR00101 91 PLEMVFIESGGDN-LSATFS--PELADLTIFVIDVAAGDKIPRKG------GPGITRSDLLVINKIDLA 150 (199)
T ss_pred CCCEEEEECCCCC-cccccc--hhhhCcEEEEEEcchhhhhhhhh------HhHhhhccEEEEEhhhcc
Confidence 4567789999931 111111 22469999999999887643210 123334 8999999997
No 361
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=97.40 E-value=0.00026 Score=78.49 Aligned_cols=117 Identities=22% Similarity=0.246 Sum_probs=67.3
Q ss_pred CCCceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeece-EEEEEeechhhhhcc
Q 003378 3 SYCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSY 81 (824)
Q Consensus 3 ~~~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~ 81 (824)
+.++.+...++ .|-+++|||++.+.+.. +.+.+- ...+|.++-. -++.+
T Consensus 163 sIDp~trTlll---cG~PNVGKSSf~~~vtr----------advevq-------pYaFTTksL~vGH~dy---------- 212 (620)
T KOG1490|consen 163 AIDPNTRTLLV---CGYPNVGKSSFNNKVTR----------ADDEVQ-------PYAFTTKLLLVGHLDY---------- 212 (620)
T ss_pred CCCCCcCeEEE---ecCCCCCcHhhcccccc----------cccccC-------Ccccccchhhhhhhhh----------
Confidence 45666778888 99999999998887621 111111 1122222211 12323
Q ss_pred ccccCCCceeEEEEcCCCccch--------HHHHHHHHHhcC-EEEEEEeCCC--CcchhHHH-HHHHH--HhCCCceEE
Q 003378 82 RGERQGNEYLINLIDSPGHVDF--------SSEVTAALRITD-GALVVVDCIE--GVCVQTET-VLRQA--LGERIRPVL 147 (824)
Q Consensus 82 ~~~~~~~~~~i~liDTPGh~df--------~~e~~~~l~~~D-~avlvvd~~~--gv~~~t~~-~l~~~--~~~~~p~il 147 (824)
+-..|.+|||||.-|= .-..+.|+...- +++++.|-++ |-+....- ++..+ +-.+.|.|+
T Consensus 213 ------kYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~Il 286 (620)
T KOG1490|consen 213 ------KYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTIL 286 (620)
T ss_pred ------heeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEE
Confidence 3568999999997551 112344554443 4667778664 43332221 22222 235789999
Q ss_pred EEeCCCcc
Q 003378 148 TVNKMDRC 155 (824)
Q Consensus 148 viNKiD~~ 155 (824)
|+||+|..
T Consensus 287 vlNK~D~m 294 (620)
T KOG1490|consen 287 VLNKIDAM 294 (620)
T ss_pred Eeeccccc
Confidence 99999986
No 362
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.00095 Score=72.65 Aligned_cols=123 Identities=17% Similarity=0.275 Sum_probs=76.1
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
.+++.+ +|..|.|||||++.|+...- .+... .+..+.+..+..++....+.+. .++
T Consensus 21 ~ftlmv---vG~sGlGKsTfiNsLf~~~l------~~~~~-~~~~~~~~~~t~~i~~~~~~ie--------------e~g 76 (366)
T KOG2655|consen 21 DFTLMV---VGESGLGKSTFINSLFLTDL------SGNRE-VPGASERIKETVEIESTKVEIE--------------ENG 76 (366)
T ss_pred ceEEEE---ecCCCccHHHHHHHHHhhhc------cCCcc-cCCcccCccccceeeeeeeeec--------------CCC
Confidence 366777 99999999999999976621 11100 1111222222333333333222 124
Q ss_pred CceeEEEEcCCCccchHHH--------------HHHHH-----------H--hcCEEEEEEeCC-CCcchhHHHHHHHHH
Q 003378 88 NEYLINLIDSPGHVDFSSE--------------VTAAL-----------R--ITDGALVVVDCI-EGVCVQTETVLRQAL 139 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e--------------~~~~l-----------~--~~D~avlvvd~~-~gv~~~t~~~l~~~~ 139 (824)
-...+|+|||||.-|+... -..++ . -.++|+..|.+. +|+.+......+.+
T Consensus 77 ~~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l- 155 (366)
T KOG2655|consen 77 VKLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKL- 155 (366)
T ss_pred eEEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHH-
Confidence 4567899999998764321 11111 1 357899999876 67888888776644
Q ss_pred hCCCceEEEEeCCCcc
Q 003378 140 GERIRPVLTVNKMDRC 155 (824)
Q Consensus 140 ~~~~p~ilviNKiD~~ 155 (824)
..++.+|-||-|.|..
T Consensus 156 ~~~vNiIPVI~KaD~l 171 (366)
T KOG2655|consen 156 SKKVNLIPVIAKADTL 171 (366)
T ss_pred hccccccceeeccccC
Confidence 5677888899999976
No 363
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.38 E-value=0.0016 Score=62.36 Aligned_cols=79 Identities=14% Similarity=0.226 Sum_probs=54.2
Q ss_pred eeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhC--CCceEEEEeCCCcchhcccCCHHHHH
Q 003378 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRPVLTVNKMDRCFLELQVDGEEAY 167 (824)
Q Consensus 90 ~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~--~~p~ilviNKiD~~~~~~~~~~~~~~ 167 (824)
+.+.+||||+..+ .....++..+|.+++|+++..--...+...++.+.+. ..+..+++|+++.. ...++.+
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~-----~~~~~~~ 117 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP-----KEGKKVF 117 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH-----HHHHHHH
Confidence 6788999999755 4557889999999999998765555556666555432 33566999999854 2334455
Q ss_pred HHHHHHHH
Q 003378 168 QTFQKVIE 175 (824)
Q Consensus 168 ~~~~~~~~ 175 (824)
+.+++.++
T Consensus 118 ~~~~~~~~ 125 (139)
T cd02038 118 KRLSNVSN 125 (139)
T ss_pred HHHHHHHH
Confidence 55555443
No 364
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.36 E-value=0.00095 Score=71.38 Aligned_cols=65 Identities=18% Similarity=0.274 Sum_probs=39.3
Q ss_pred CceeEEEEcCCCccchHHH----HHH---HHH-----hcCEEEEEEeCCCCcchhHHHHHHHHHhCCC-ceEEEEeCCCc
Q 003378 88 NEYLINLIDSPGHVDFSSE----VTA---ALR-----ITDGALVVVDCIEGVCVQTETVLRQALGERI-RPVLTVNKMDR 154 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e----~~~---~l~-----~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~-p~ilviNKiD~ 154 (824)
+++.+.||||||....... ... ... ..|..++|+|+..|-. +........ ..+ +.-+++||+|-
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~--~~~~~~~f~-~~~~~~g~IlTKlDe 229 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQN--ALEQAKVFN-EAVGLTGIILTKLDG 229 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHH--HHHHHHHHH-hhCCCCEEEEEccCC
Confidence 5688999999998643333 222 222 2799999999975532 211111111 122 34589999997
Q ss_pred c
Q 003378 155 C 155 (824)
Q Consensus 155 ~ 155 (824)
.
T Consensus 230 ~ 230 (272)
T TIGR00064 230 T 230 (272)
T ss_pred C
Confidence 5
No 365
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.34 E-value=0.0011 Score=65.02 Aligned_cols=63 Identities=21% Similarity=0.162 Sum_probs=39.8
Q ss_pred ceeEEEEcCCCccchHHH--------HHHHHHhcCEEEEEEeCCCCcch--hHHHHHHHHHhCCCceEEEEeCCCc
Q 003378 89 EYLINLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIEGVCV--QTETVLRQALGERIRPVLTVNKMDR 154 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e--------~~~~l~~~D~avlvvd~~~gv~~--~t~~~l~~~~~~~~p~ilviNKiD~ 154 (824)
...+.||||||-.+-..- ...+.-..|.++.+||+...... .......|+.... ++++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad---~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFAD---RILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCC---EEEEecccC
Confidence 467789999998652221 22233457999999998754321 1122335554444 789999996
No 366
>PRK14974 cell division protein FtsY; Provisional
Probab=97.34 E-value=0.00084 Score=73.64 Aligned_cols=63 Identities=22% Similarity=0.278 Sum_probs=40.4
Q ss_pred CceeEEEEcCCCccc----hHHHHHHHHH--hcCEEEEEEeCCCCcchhHHHHHHHHHhC--CCc-eEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVD----FSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGE--RIR-PVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~d----f~~e~~~~l~--~~D~avlvvd~~~gv~~~t~~~l~~~~~~--~~p-~ilviNKiD~~ 155 (824)
.++.+.||||||... ++.+...-.+ ..|..++|+|+..|- ..+.++... .++ --+++||+|..
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~-----d~~~~a~~f~~~~~~~giIlTKlD~~ 292 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN-----DAVEQAREFNEAVGIDGVILTKVDAD 292 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch-----hHHHHHHHHHhcCCCCEEEEeeecCC
Confidence 356799999999763 4444433333 368899999997652 222333322 233 45899999985
No 367
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.34 E-value=0.00076 Score=73.66 Aligned_cols=131 Identities=18% Similarity=0.196 Sum_probs=68.9
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceee--cCCh---------hhHhHhccceeeceEEEEEeechh
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRM--TDTR---------QDEAERGITIKSTGISLYYEMTDA 76 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~--~D~~---------~~E~~rgiTi~~~~~~~~~~~~~~ 76 (824)
.-.|++ +|..|+||||++..|....... .+++.. .|.. .....+++.+-. .....+..
T Consensus 114 ~~vi~l---vGpnGsGKTTt~~kLA~~l~~~----g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~----~~~~~dpa 182 (318)
T PRK10416 114 PFVILV---VGVNGVGKTTTIGKLAHKYKAQ----GKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIA----QKEGADPA 182 (318)
T ss_pred CeEEEE---ECCCCCcHHHHHHHHHHHHHhc----CCeEEEEecCccchhhHHHHHHHHHHcCceEEE----eCCCCCHH
Confidence 446677 9999999999999996543210 112222 2221 012233433211 11111110
Q ss_pred --hhhccccccCCCceeEEEEcCCCccc----hHHHHHHHHHh--------cCEEEEEEeCCCCcchhHHHHHHHHHhC-
Q 003378 77 --ALKSYRGERQGNEYLINLIDSPGHVD----FSSEVTAALRI--------TDGALVVVDCIEGVCVQTETVLRQALGE- 141 (824)
Q Consensus 77 --~~~~~~~~~~~~~~~i~liDTPGh~d----f~~e~~~~l~~--------~D~avlvvd~~~gv~~~t~~~l~~~~~~- 141 (824)
..+.+. ....+++.+.||||||... .+.|.....++ .|..++|+|+..|-.... ++...
T Consensus 183 ~~v~~~l~-~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~-----~a~~f~ 256 (318)
T PRK10416 183 SVAFDAIQ-AAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS-----QAKAFH 256 (318)
T ss_pred HHHHHHHH-HHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH-----HHHHHH
Confidence 011111 1123568899999999754 33444444433 567899999997643222 22222
Q ss_pred -CC-ceEEEEeCCCcc
Q 003378 142 -RI-RPVLTVNKMDRC 155 (824)
Q Consensus 142 -~~-p~ilviNKiD~~ 155 (824)
.+ +.-+++||+|..
T Consensus 257 ~~~~~~giIlTKlD~t 272 (318)
T PRK10416 257 EAVGLTGIILTKLDGT 272 (318)
T ss_pred hhCCCCEEEEECCCCC
Confidence 22 345999999965
No 368
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0018 Score=74.62 Aligned_cols=137 Identities=20% Similarity=0.199 Sum_probs=82.3
Q ss_pred CceeeEEEeecCccCCCCCHHHHHHHHHHHcCCccc------------ccCCc--eeecCChhhHhHhcc----------
Q 003378 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQ------------EVAGD--VRMTDTRQDEAERGI---------- 60 (824)
Q Consensus 5 ~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~------------~~~g~--~~~~D~~~~E~~rgi---------- 60 (824)
.++..+|++ .|...+||||++++||...-.-.. ...|. +..+|- .+|..--.
T Consensus 106 ~r~~mKV~i---fGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~-s~ek~d~~ti~~~~haL~ 181 (749)
T KOG0448|consen 106 ARRHMKVAI---FGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEG-SEEKIDMKTINQLAHALK 181 (749)
T ss_pred hhcccEEEE---eCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCC-CcccccHHHHhHHHHhcC
Confidence 356789999 999999999999999876422111 01121 111111 00111001
Q ss_pred ----ceeeceEEEEEeechhhhhccccccCCCceeEEEEcCCCc---cchHHHHHHHHHhcCEEEEEEeCCCCcchhHHH
Q 003378 61 ----TIKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGH---VDFSSEVTAALRITDGALVVVDCIEGVCVQTET 133 (824)
Q Consensus 61 ----Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDTPGh---~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~ 133 (824)
.-..+.+.+.|..+. +.+-.+ .+.+||.||- ..+...+..-...+|..|+|+++..-.+-..+.
T Consensus 182 ~~~~~~~~sLlrV~~p~~~-------csLLrn--DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~ 252 (749)
T KOG0448|consen 182 PDKDLGAGSLLRVFWPDDK-------CSLLRN--DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQ 252 (749)
T ss_pred cccccCcceEEEEEecCcc-------chhhhc--cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHH
Confidence 112233344444210 111111 6889999996 356677788888999999999998766555555
Q ss_pred HHHHHHhCCCceE-EEEeCCCcc
Q 003378 134 VLRQALGERIRPV-LTVNKMDRC 155 (824)
Q Consensus 134 ~l~~~~~~~~p~i-lviNKiD~~ 155 (824)
.+..+.+. +|-| |+.||+|..
T Consensus 253 Ff~~vs~~-KpniFIlnnkwDas 274 (749)
T KOG0448|consen 253 FFHKVSEE-KPNIFILNNKWDAS 274 (749)
T ss_pred HHHHhhcc-CCcEEEEechhhhh
Confidence 55555555 6755 778899986
No 369
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.32 E-value=0.00027 Score=70.23 Aligned_cols=25 Identities=36% Similarity=0.422 Sum_probs=21.6
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHH
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
..++|++ +|.+|+|||||+++|+..
T Consensus 116 ~~~~~~~---vG~pnvGKSslin~l~~~ 140 (172)
T cd04178 116 TSITVGV---VGFPNVGKSSLINSLKRS 140 (172)
T ss_pred cCcEEEE---EcCCCCCHHHHHHHHhCc
Confidence 3478899 999999999999999643
No 370
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.30 E-value=0.00069 Score=68.82 Aligned_cols=66 Identities=24% Similarity=0.226 Sum_probs=40.9
Q ss_pred CceeEEEEcCCCccchHH----HHHHHHH--hcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSS----EVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~----e~~~~l~--~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+++.+.||||||+..... ++..-++ ..+-+++|+|+..+-... ..+.......++. =++++|+|-.
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~-~~~~~~~~~~~~~-~lIlTKlDet 153 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDL-EQALAFYEAFGID-GLILTKLDET 153 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH-HHHHHHHHHSSTC-EEEEESTTSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHH-HHHHHHhhcccCc-eEEEEeecCC
Confidence 457899999999765433 3333332 357899999998774332 2343444344443 4669999986
No 371
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.26 E-value=0.00087 Score=75.85 Aligned_cols=64 Identities=27% Similarity=0.414 Sum_probs=38.8
Q ss_pred CCceeEEEEcCCCccch----HHHHHHHH--HhcCEEEEEEeCCCCcchhHHHHHHHHHh--CCCceE-EEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDF----SSEVTAAL--RITDGALVVVDCIEGVCVQTETVLRQALG--ERIRPV-LTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df----~~e~~~~l--~~~D~avlvvd~~~gv~~~t~~~l~~~~~--~~~p~i-lviNKiD~~ 155 (824)
..++.+.||||||.... ..++..-. ...|.+++|+|+..| + ....++.. ..+++. +++||+|-.
T Consensus 180 ~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q--~~~~~a~~f~~~v~i~giIlTKlD~~ 252 (428)
T TIGR00959 180 ENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---Q--DAVNTAKTFNERLGLTGVVLTKLDGD 252 (428)
T ss_pred hcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---H--HHHHHHHHHHhhCCCCEEEEeCccCc
Confidence 34678999999996432 23332222 246889999998754 2 22233322 234443 889999954
No 372
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=97.26 E-value=0.0018 Score=56.55 Aligned_cols=74 Identities=15% Similarity=0.227 Sum_probs=49.7
Q ss_pred EeeecCCCCcceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEe--cccc
Q 003378 374 KMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQ 451 (824)
Q Consensus 374 K~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~--gl~~ 451 (824)
.++..+..|. +..+||.+|++++||.+++++.+. + .....+|..|.. ...++++|.|||.+++. +++.
T Consensus 7 ~vf~v~g~Gt-Vv~G~v~~G~v~~g~~v~~~P~~~--g---~~~~~~V~sI~~----~~~~~~~a~aGd~v~l~l~~i~~ 76 (87)
T cd03694 7 EIYSVPGVGT-VVGGTVSKGVIRLGDTLLLGPDQD--G---SFRPVTVKSIHR----NRSPVRVVRAGQSASLALKKIDR 76 (87)
T ss_pred eEEEcCCcce-EEEEEEecCEEeCCCEEEECCCCC--C---CEeEEEEEEEEE----CCeECCEECCCCEEEEEEcCCCH
Confidence 3333345676 899999999999999999864310 1 012368888864 25779999999999874 4433
Q ss_pred ccccce
Q 003378 452 YITKNA 457 (824)
Q Consensus 452 ~~~~tg 457 (824)
...+.|
T Consensus 77 ~~i~~G 82 (87)
T cd03694 77 SLLRKG 82 (87)
T ss_pred HHcCCc
Confidence 323344
No 373
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=97.25 E-value=0.001 Score=69.37 Aligned_cols=64 Identities=9% Similarity=0.036 Sum_probs=47.9
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHH------hCCCceEEEEeCCC
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL------GERIRPVLTVNKMD 153 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~------~~~~p~ilviNKiD 153 (824)
.+|.+.||||||+.. ..+..++..+|.+|+++.+..-....+...+..+. ..++|..+++|.++
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 468999999999876 56778999999999999887654444444443322 34677779999987
No 374
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.23 E-value=0.0013 Score=72.67 Aligned_cols=64 Identities=14% Similarity=0.062 Sum_probs=38.9
Q ss_pred ceeEEEEcCCCccc----hHHHHHHHHH--hcCEEEEEEeCCCCcchhHHHHHHHHHhCCCce-EEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVD----FSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~d----f~~e~~~~l~--~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~-ilviNKiD~~ 155 (824)
++.+.||||||... .+.+....++ ..|-.+||+|++.+-.. ...+++.... +++ =++++|+|-.
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d-~~~i~~~F~~--~~idglI~TKLDET 390 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD-MIEIITNFKD--IHIDGIVFTKFDET 390 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHH-HHHHHHHhcC--CCCCEEEEEcccCC
Confidence 57899999999754 3444544443 34678899998643221 1223332222 332 3899999976
No 375
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.20 E-value=0.0012 Score=74.82 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=40.6
Q ss_pred eeEEEEcCCCccchHHHH------HHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhC--CCceE-EEEeCCCcc
Q 003378 90 YLINLIDSPGHVDFSSEV------TAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRPV-LTVNKMDRC 155 (824)
Q Consensus 90 ~~i~liDTPGh~df~~e~------~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~--~~p~i-lviNKiD~~ 155 (824)
+.+.||||||......+. ..++..+|.+++|+|+..|- ..+.++... .+++- +++||+|-.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq-----~av~~a~~F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ-----QAKNQAKAFHEAVGIGGIIITKLDGT 245 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH-----HHHHHHHHHHhcCCCCEEEEecccCC
Confidence 478999999976543332 23445689999999998862 233344333 34543 889999964
No 376
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.17 E-value=0.002 Score=70.33 Aligned_cols=150 Identities=23% Similarity=0.206 Sum_probs=81.1
Q ss_pred ccCCCCCHHHHHHHHHHHcC-----CcccccCCceeec--CChhhHhHhccceeeceEEEEEeechh-hhhccccccCCC
Q 003378 17 ANSTFAGKSTLTDSLVAAAG-----IIAQEVAGDVRMT--DTRQDEAERGITIKSTGISLYYEMTDA-ALKSYRGERQGN 88 (824)
Q Consensus 17 ~G~~~~GKTTL~~~ll~~~g-----~i~~~~~g~~~~~--D~~~~E~~rgiTi~~~~~~~~~~~~~~-~~~~~~~~~~~~ 88 (824)
-|=-|||||||+++||.+.. .|.. ..|+.-.- +.....-+.-..+...++.+....+.. .+..+.. . ..
T Consensus 7 tGFLGsGKTTlL~~lL~~~~g~kiAVIVN-EfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~-~-~~ 83 (323)
T COG0523 7 TGFLGSGKTTLLNHLLANRDGKKIAVIVN-EFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLR-R-RD 83 (323)
T ss_pred eecCCCCHHHHHHHHHhccCCCcEEEEEe-cCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHh-c-cC
Confidence 47799999999999997654 1111 12321111 111111111222333333333222221 1222222 1 22
Q ss_pred ceeEEEEcCCCccc-------hHH-HHHHHHHhcCEEEEEEeCCCCcchhH---HHHHHHHHhCCCceEEEEeCCCcchh
Q 003378 89 EYLINLIDSPGHVD-------FSS-EVTAALRITDGALVVVDCIEGVCVQT---ETVLRQALGERIRPVLTVNKMDRCFL 157 (824)
Q Consensus 89 ~~~i~liDTPGh~d-------f~~-e~~~~l~~~D~avlvvd~~~gv~~~t---~~~l~~~~~~~~p~ilviNKiD~~~~ 157 (824)
.....+|-|-|-.+ |.. ......-..|++|-||||........ ....+|+.... +|++||.|+.
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD---~ivlNK~Dlv-- 158 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFAD---VIVLNKTDLV-- 158 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCc---EEEEecccCC--
Confidence 26677899999765 222 22223345688999999997655433 34445655555 8999999998
Q ss_pred cccCCHHHHHHHHHHHHHHhhh
Q 003378 158 ELQVDGEEAYQTFQKVIENANV 179 (824)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~ 179 (824)
+.++ .+.++..+.++|.
T Consensus 159 ----~~~~-l~~l~~~l~~lnp 175 (323)
T COG0523 159 ----DAEE-LEALEARLRKLNP 175 (323)
T ss_pred ----CHHH-HHHHHHHHHHhCC
Confidence 4343 5666776666554
No 377
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=97.16 E-value=0.0018 Score=64.08 Aligned_cols=66 Identities=18% Similarity=0.052 Sum_probs=53.5
Q ss_pred CceeEEEEcCCCccchHHHHHHHH--HhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceE-EEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l--~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~i-lviNKiD~~ 155 (824)
.+|.+.++|||+... .+....+ ..+|.+++|+.+..--...+...++.+.+.+.+++ +++|+.+..
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 478899999999754 3444444 68999999999887777788888899999999876 889999864
No 378
>PRK10867 signal recognition particle protein; Provisional
Probab=97.14 E-value=0.0015 Score=74.11 Aligned_cols=64 Identities=27% Similarity=0.411 Sum_probs=39.1
Q ss_pred CCceeEEEEcCCCcc----chHHHHHHHHH--hcCEEEEEEeCCCCcchhHHHHHHHHHh--CCCce-EEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHV----DFSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALG--ERIRP-VLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~----df~~e~~~~l~--~~D~avlvvd~~~gv~~~t~~~l~~~~~--~~~p~-ilviNKiD~~ 155 (824)
..++.+.||||||.. +...++..-.+ ..|.+++|+|+..| | ....++.. ..+++ -+++||+|-.
T Consensus 181 ~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q--~av~~a~~F~~~~~i~giIlTKlD~~ 253 (433)
T PRK10867 181 ENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---Q--DAVNTAKAFNEALGLTGVILTKLDGD 253 (433)
T ss_pred hcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---H--HHHHHHHHHHhhCCCCEEEEeCccCc
Confidence 346789999999964 23333333222 45788999998654 1 22233332 23544 3889999954
No 379
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.14 E-value=0.00064 Score=66.33 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=22.0
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHc
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAA 35 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~ 35 (824)
...++++ +|++++|||||+++|+...
T Consensus 99 ~~~~~~~---~G~~~~GKstlin~l~~~~ 124 (155)
T cd01849 99 KSITVGV---IGYPNVGKSSVINALLNKL 124 (155)
T ss_pred cCcEEEE---EccCCCCHHHHHHHHHccc
Confidence 4567888 9999999999999996544
No 380
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=97.13 E-value=0.0024 Score=55.88 Aligned_cols=78 Identities=18% Similarity=0.383 Sum_probs=51.4
Q ss_pred EEEeeecCCCCcceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEe--cc
Q 003378 372 VSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GL 449 (824)
Q Consensus 372 VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~--gl 449 (824)
|..++..+..|. +..+||.+|+++.||.+.+++... +. ..+|+.|... ..++++|.|||.+++. ++
T Consensus 5 V~~v~~~~g~G~-vv~G~v~~G~v~~gd~v~~~p~~~--~~-----~~~V~si~~~----~~~~~~a~~G~~v~l~l~~~ 72 (87)
T cd03697 5 IEDVFSIPGRGT-VVTGRIERGTIKVGDEVEIVGFGE--TL-----KTTVTGIEMF----RKTLDEAEAGDNVGVLLRGV 72 (87)
T ss_pred EEEEEeCCCcEE-EEEEEECCCCCccCCEEEEeCCCC--Cc-----eEEEEEEEEC----CcCCCEECCCCEEEEEECCC
Confidence 333333345565 899999999999999999875321 11 2578888642 4679999999999874 44
Q ss_pred ccccccce-eeec
Q 003378 450 DQYITKNA-TLTN 461 (824)
Q Consensus 450 ~~~~~~tg-Tl~~ 461 (824)
+......| .||+
T Consensus 73 ~~~~v~rG~vl~~ 85 (87)
T cd03697 73 KREDVERGMVLAK 85 (87)
T ss_pred CHHHcCCccEEec
Confidence 33222345 4444
No 381
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.12 E-value=0.0034 Score=57.07 Aligned_cols=59 Identities=17% Similarity=0.052 Sum_probs=46.2
Q ss_pred eEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCc----eEEEEeC
Q 003378 91 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR----PVLTVNK 151 (824)
Q Consensus 91 ~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p----~ilviNK 151 (824)
.+.+||||+..+ .....++..+|.+++|+++...-...+...++.+.+.+.+ ..+++|+
T Consensus 44 D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLD--EVSLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 688999999876 4566788999999999999877777777777777665543 4488886
No 382
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=97.10 E-value=0.00046 Score=69.10 Aligned_cols=116 Identities=16% Similarity=0.181 Sum_probs=71.1
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
..+++.+ +|...+|||.|+..+ ..+.....-. .++.|+. + +.+... +
T Consensus 3 ~~~K~Vv---VGDga~GKT~ll~~~--t~~~fp~~yv--PTVFdny--------s-----~~v~V~-------------d 49 (198)
T KOG0393|consen 3 RRIKCVV---VGDGAVGKTCLLISY--TTNAFPEEYV--PTVFDNY--------S-----ANVTVD-------------D 49 (198)
T ss_pred eeeEEEE---ECCCCcCceEEEEEe--ccCcCccccc--CeEEccc--------e-----EEEEec-------------C
Confidence 4588899 999999999998766 3332211000 1122221 0 111110 2
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchh--HHHHHHHHH--hCCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ--TETVLRQAL--GERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~--t~~~l~~~~--~~~~p~ilviNKiD~~ 155 (824)
++...+.||||+|++||..-..-+...+|..+++++...--... ....+-.+. .-++|+|+|.+|.|+-
T Consensus 50 g~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 50 GKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLR 122 (198)
T ss_pred CCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhh
Confidence 45678999999999999764345667899998887755432222 111222222 2478999999999985
No 383
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.08 E-value=0.0007 Score=64.93 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=18.9
Q ss_pred EEEeecCccCCCCCHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
++++ +|.+|+|||||+++|+.
T Consensus 85 ~~~~---~G~~~vGKstlin~l~~ 105 (141)
T cd01857 85 TIGL---VGYPNVGKSSLINALVG 105 (141)
T ss_pred EEEE---ECCCCCCHHHHHHHHhC
Confidence 6778 99999999999999964
No 384
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.05 E-value=0.0013 Score=70.18 Aligned_cols=133 Identities=18% Similarity=0.140 Sum_probs=64.4
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHc-CCccc-ccCCceeecCChhhHhHhccceeeceEEEEE----eechhhhhc
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAA-GIIAQ-EVAGDVRMTDTRQDEAERGITIKSTGISLYY----EMTDAALKS 80 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~-g~i~~-~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~----~~~~~~~~~ 80 (824)
...-|++ +|.+|+|||||+++|+... +.... ...|+. .++ ...++-+...+. .+.+.- ..+...+..
T Consensus 103 ~~~~v~l---~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~-~t~-~Da~rI~~~g~p--vvqi~tG~~Chl~a~mv~~ 175 (290)
T PRK10463 103 KQLVLNL---VSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQ-QTV-NDAARIRATGTP--AIQVNTGKGCHLDAQMIAD 175 (290)
T ss_pred CCeEEEE---ECCCCCCHHHHHHHHHHHhccCCCEEEECCCc-CcH-HHHHHHHhcCCc--EEEecCCCCCcCcHHHHHH
Confidence 3456777 9999999999999998652 11100 001211 011 122332221111 111100 001111111
Q ss_pred cccccCCCceeEEEEcCCCc-cc-hHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 81 YRGERQGNEYLINLIDSPGH-VD-FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 81 ~~~~~~~~~~~i~liDTPGh-~d-f~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
....+...+..+.||++-|. +. .. .-+ ..+..+.|++..+|... .+++-......-++++||+|+.
T Consensus 176 Al~~L~~~~~d~liIEnvGnLvcPa~----fdl-ge~~~v~vlsV~eg~dk----plKyp~~f~~ADIVVLNKiDLl 243 (290)
T PRK10463 176 AAPRLPLDDNGILFIENVGNLVCPAS----FDL-GEKHKVAVLSVTEGEDK----PLKYPHMFAAASLMLLNKVDLL 243 (290)
T ss_pred HHHHHhhcCCcEEEEECCCCccCCCc----cch-hhceeEEEEECcccccc----chhccchhhcCcEEEEEhHHcC
Confidence 11222334456779999984 11 10 001 11345688888888431 1122233456779999999997
No 385
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=97.02 E-value=0.0042 Score=53.73 Aligned_cols=63 Identities=27% Similarity=0.425 Sum_probs=46.2
Q ss_pred EEEEeeecCCCCcceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEe
Q 003378 371 YVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 447 (824)
Q Consensus 371 ~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~ 447 (824)
.|..++..+..|. +..+||.+|++++|+++.+++.+ . ..+|++|... ..++++|.|||.+++.
T Consensus 4 ~i~~~~~~~~~g~-vv~G~v~sG~i~~g~~v~~~p~~----~-----~~~V~sI~~~----~~~~~~a~aGd~v~i~ 66 (83)
T cd03696 4 PIDRVFTVKGQGT-VVTGTVLSGSVKVGDKVEILPLG----E-----ETRVRSIQVH----GKDVEEAKAGDRVALN 66 (83)
T ss_pred EEEEEEEcCCcEE-EEEEEEeecEEeCCCEEEECCCC----c-----eEEEEEEEEC----CcCcCEEcCCCEEEEE
Confidence 3444443345565 88999999999999999986532 1 2678888643 4678999999999874
No 386
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.02 E-value=0.0021 Score=70.77 Aligned_cols=64 Identities=22% Similarity=0.108 Sum_probs=36.4
Q ss_pred CceeEEEEcCCCccc----hHHHHHHHHHh--cCEEEEEEeCCCCcchhHHHHHHHHHhC-CCc-eEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVD----FSSEVTAALRI--TDGALVVVDCIEGVCVQTETVLRQALGE-RIR-PVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~d----f~~e~~~~l~~--~D~avlvvd~~~gv~~~t~~~l~~~~~~-~~p-~ilviNKiD~~ 155 (824)
+++.+.||||||+.. ...++...... .|..++|+++. ...+ .+...+..+ .++ --+++||+|-.
T Consensus 284 ~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~--d~~~i~~~f~~l~i~glI~TKLDET 355 (407)
T PRK12726 284 NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSA--DVMTILPKLAEIPIDGFIITKMDET 355 (407)
T ss_pred CCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHH--HHHHHHHhcCcCCCCEEEEEcccCC
Confidence 357899999999843 34444443333 35667777763 2222 222222222 333 34889999976
No 387
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.01 E-value=0.0012 Score=63.26 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=44.9
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhC--CCceEEEEeCCCcc
Q 003378 105 SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRPVLTVNKMDRC 155 (824)
Q Consensus 105 ~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~--~~p~ilviNKiD~~ 155 (824)
+++..++..+|.+++|+|+.++...+...+.+.+... ++|+++++||+|+.
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~ 55 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLL 55 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcC
Confidence 5788999999999999999998888877777777665 88999999999986
No 388
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.01 E-value=0.0046 Score=70.91 Aligned_cols=65 Identities=20% Similarity=0.219 Sum_probs=37.7
Q ss_pred ceeEEEEcCCCccchHHHHH---HHHH--hcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVT---AALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~---~~l~--~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
++.+.||||||......... ..++ .....++|+++..+..... .+++..... .+.-+++||+|..
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~-eii~~f~~~-~~~gvILTKlDEt 497 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLD-EVVRRFAHA-KPQGVVLTKLDET 497 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHH-HHHHHHHhh-CCeEEEEecCcCc
Confidence 57899999999754322211 1111 1235678888876533332 233333332 3556999999985
No 389
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.00 E-value=0.0017 Score=66.10 Aligned_cols=69 Identities=23% Similarity=0.226 Sum_probs=50.8
Q ss_pred ccCCCceeEEEEcC-CCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCc-eEEEEeCCCcc
Q 003378 84 ERQGNEYLINLIDS-PGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRC 155 (824)
Q Consensus 84 ~~~~~~~~i~liDT-PGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p-~ilviNKiD~~ 155 (824)
+..-+.+.+.++|| +|..-|. ....+.+|.+|+|+|++----...+++-+++.+.++. +.+|+||+|-.
T Consensus 128 ~l~~~~~e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 128 HLILNRYEVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred HHhcccCcEEEEecccchhhhc---cccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 34445577888999 4666665 3445678999999999865555666777888899954 55899999964
No 390
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=96.97 E-value=0.0011 Score=65.88 Aligned_cols=67 Identities=16% Similarity=0.190 Sum_probs=44.5
Q ss_pred ceeEEEEcCCCcc------chHHHHHHHHHhcC---EEEEEEeCCCCc-----chhHHHHHHHHHhCCCceEEEEeCCCc
Q 003378 89 EYLINLIDSPGHV------DFSSEVTAALRITD---GALVVVDCIEGV-----CVQTETVLRQALGERIRPVLTVNKMDR 154 (824)
Q Consensus 89 ~~~i~liDTPGh~------df~~e~~~~l~~~D---~avlvvd~~~gv-----~~~t~~~l~~~~~~~~p~ilviNKiD~ 154 (824)
.-.+.++||||+. ..+......+..-+ ++++++|+.--+ -......+.......+|.|=++.|||+
T Consensus 97 eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDL 176 (273)
T KOG1534|consen 97 EDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDL 176 (273)
T ss_pred cCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHH
Confidence 3457789999954 45677777777654 567777765211 111222334445678999999999999
Q ss_pred c
Q 003378 155 C 155 (824)
Q Consensus 155 ~ 155 (824)
.
T Consensus 177 l 177 (273)
T KOG1534|consen 177 L 177 (273)
T ss_pred h
Confidence 8
No 391
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=96.97 E-value=0.0071 Score=61.31 Aligned_cols=123 Identities=22% Similarity=0.273 Sum_probs=67.3
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
.++|.+ +|..|.|||||++.|. .+...+. .+ .|. ..|.-+ -|+....++-... -++
T Consensus 46 ~FNIMV---VgqSglgkstlinTlf-~s~v~~~--s~----~~~-~~~p~p-kT~eik~~thvie------------E~g 101 (336)
T KOG1547|consen 46 DFNIMV---VGQSGLGKSTLINTLF-KSHVSDS--SS----SDN-SAEPIP-KTTEIKSITHVIE------------EKG 101 (336)
T ss_pred ceEEEE---EecCCCCchhhHHHHH-HHHHhhc--cC----CCc-ccCccc-ceEEEEeeeeeee------------ecc
Confidence 368888 9999999999999884 3333222 11 111 011111 1222222221111 133
Q ss_pred CceeEEEEcCCCccchHH-------------H-HHHHH----------Hh----cCEEEEEEeCC-CCcchhHHHHHHHH
Q 003378 88 NEYLINLIDSPGHVDFSS-------------E-VTAAL----------RI----TDGALVVVDCI-EGVCVQTETVLRQA 138 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~-------------e-~~~~l----------~~----~D~avlvvd~~-~gv~~~t~~~l~~~ 138 (824)
...++|+|||||.-|+.. + -...| +. .+.|++.+.++ +...+-+.+.++.+
T Consensus 102 VklkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrL 181 (336)
T KOG1547|consen 102 VKLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRL 181 (336)
T ss_pred eEEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHH
Confidence 456899999999866422 1 11222 23 34678878776 33555566665543
Q ss_pred HhCCCceEEEEeCCCcc
Q 003378 139 LGERIRPVLTVNKMDRC 155 (824)
Q Consensus 139 ~~~~~p~ilviNKiD~~ 155 (824)
. .=+-+|-||-|.|-.
T Consensus 182 t-~vvNvvPVIakaDtl 197 (336)
T KOG1547|consen 182 T-EVVNVVPVIAKADTL 197 (336)
T ss_pred h-hhheeeeeEeecccc
Confidence 2 223456788999977
No 392
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=96.94 E-value=0.0041 Score=58.68 Aligned_cols=117 Identities=21% Similarity=0.263 Sum_probs=79.4
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.-+++|++ +|....|||||+-....... | ..-++..|+-..-..++..
T Consensus 18 ~Vslkv~l---lGD~qiGKTs~mvkYV~~~~-------------d-e~~~q~~GvN~mdkt~~i~--------------- 65 (205)
T KOG1673|consen 18 LVSLKVGL---LGDAQIGKTSLMVKYVQNEY-------------D-EEYTQTLGVNFMDKTVSIR--------------- 65 (205)
T ss_pred ceEEEEEe---ecccccCceeeehhhhcchh-------------H-HHHHHHhCccceeeEEEec---------------
Confidence 45688999 99999999999876621111 1 1112333433322222221
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHHhCCCc--eEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALGERIR--PVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~~~~~~~~p--~ilviNKiD~~ 155 (824)
+..-.+.+||.-|+.+|....--+...+-++++++|-+.--.-... ...+||+..+.- +|++.+|.|..
T Consensus 66 -~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~f 137 (205)
T KOG1673|consen 66 -GTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLF 137 (205)
T ss_pred -ceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhh
Confidence 1245678999999999998888888888899999998765444443 344788877763 67999999986
No 393
>PRK12288 GTPase RsgA; Reviewed
Probab=96.94 E-value=0.00064 Score=75.14 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=18.7
Q ss_pred EEeecCccCCCCCHHHHHHHHHHHc
Q 003378 11 VCLGPDANSTFAGKSTLTDSLVAAA 35 (824)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~ll~~~ 35 (824)
+++ +|.+|+|||||+|+|+...
T Consensus 208 ~~~---vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 208 SIF---VGQSGVGKSSLINALLPEA 229 (347)
T ss_pred EEE---ECCCCCCHHHHHHHhcccc
Confidence 466 9999999999999997543
No 394
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=96.93 E-value=0.001 Score=67.13 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=21.0
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHc
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAA 35 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~ 35 (824)
.++++ +|.+|+|||||+++|+...
T Consensus 128 ~~~~~---~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 128 GDVYV---VGATNVGKSTLINALLKKD 151 (190)
T ss_pred CcEEE---EcCCCCCHHHHHHHHHHhc
Confidence 56788 9999999999999997654
No 395
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.93 E-value=0.0017 Score=69.76 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.4
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHH
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
+.+++++ +|.+|+|||||+++|..
T Consensus 117 ~~~~~~~---vG~~nvGKSslin~l~~ 140 (276)
T TIGR03596 117 RPIRAMI---VGIPNVGKSTLINRLAG 140 (276)
T ss_pred CCeEEEE---ECCCCCCHHHHHHHHhC
Confidence 4678999 99999999999999963
No 396
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=96.93 E-value=0.0012 Score=71.30 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=22.3
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHH
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
.+.++|++ +|.+|+|||||+++|...
T Consensus 119 ~~~~~~~~---~G~pnvGKSsliN~l~~~ 144 (287)
T PRK09563 119 PRAIRAMI---IGIPNVGKSTLINRLAGK 144 (287)
T ss_pred cCceEEEE---ECCCCCCHHHHHHHHhcC
Confidence 35578999 999999999999999643
No 397
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.83 E-value=0.0028 Score=61.92 Aligned_cols=49 Identities=14% Similarity=0.151 Sum_probs=40.4
Q ss_pred HHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHh--CCCceEEEEeCCCcc
Q 003378 107 VTAALRITDGALVVVDCIEGVCVQTETVLRQALG--ERIRPVLTVNKMDRC 155 (824)
Q Consensus 107 ~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~--~~~p~ilviNKiD~~ 155 (824)
+.+++..+|.+++|+|+..........+.+.+.. .++|+|+|+||+|+.
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~ 52 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLV 52 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcC
Confidence 5678999999999999998776667777666654 348999999999986
No 398
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.79 E-value=0.0012 Score=70.21 Aligned_cols=17 Identities=35% Similarity=0.454 Sum_probs=15.9
Q ss_pred ccCCCCCHHHHHHHHHH
Q 003378 17 ANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 17 ~G~~~~GKTTL~~~ll~ 33 (824)
+|++|+|||||+|+|+.
T Consensus 170 ~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 170 LGQSGVGKSTLINALLP 186 (301)
T ss_pred ECCCCCcHHHHHHhhCc
Confidence 79999999999999964
No 399
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.76 E-value=0.0095 Score=62.90 Aligned_cols=62 Identities=24% Similarity=0.252 Sum_probs=44.5
Q ss_pred cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHH--HHHHHhCCCceEEEEeCCCcc
Q 003378 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETV--LRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~--l~~~~~~~~p~ilviNKiD~~ 155 (824)
++.-+|.+.||-|-|--.- |+ .-...+|..++|.=+..|...|..+. ++.+ =|+||||.|+.
T Consensus 139 ldAaG~DvIIVETVGvGQs--ev-~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia------Di~vINKaD~~ 202 (323)
T COG1703 139 LDAAGYDVIIVETVGVGQS--EV-DIANMADTFLVVMIPGAGDDLQGIKAGIMEIA------DIIVINKADRK 202 (323)
T ss_pred HHhcCCCEEEEEecCCCcc--hh-HHhhhcceEEEEecCCCCcHHHHHHhhhhhhh------heeeEeccChh
Confidence 3445889999999986442 22 23457899999988888888777643 3333 38999999988
No 400
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.75 E-value=0.0036 Score=62.08 Aligned_cols=130 Identities=18% Similarity=0.201 Sum_probs=62.5
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCC-cccc-cCCceeecCChhhHhHh--ccceeec-eEEEEEeechh----hhh
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGI-IAQE-VAGDVRMTDTRQDEAER--GITIKST-GISLYYEMTDA----ALK 79 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~-i~~~-~~g~~~~~D~~~~E~~r--giTi~~~-~~~~~~~~~~~----~~~ 79 (824)
+.|.+ .|++|||||||+++++..-+. .+-. ..|. -++....+...+ |..+... +-..++. +.+ .+.
T Consensus 14 ~~i~v---~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~D-i~t~~Da~~l~~~~g~~i~~v~TG~~CH~-da~m~~~ai~ 88 (202)
T COG0378 14 LRIGV---GGPPGSGKTALIEKTLRALKDEYKIAVITGD-IYTKEDADRLRKLPGEPIIGVETGKGCHL-DASMNLEAIE 88 (202)
T ss_pred EEEEe---cCCCCcCHHHHHHHHHHHHHhhCCeEEEece-eechhhHHHHHhCCCCeeEEeccCCccCC-cHHHHHHHHH
Confidence 67777 999999999999999754321 1110 1121 122121211111 2111110 0001111 111 112
Q ss_pred ccccccCCCceeEEEEcCCCccchHHHHHHHHHhcC-EEEEEEeCCCCcchhHH--HHHHHHHhCCCceEEEEeCCCcc
Q 003378 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITD-GALVVVDCIEGVCVQTE--TVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 80 ~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D-~avlvvd~~~gv~~~t~--~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
.+..... ...+.||-+-| ++... .+-...| .-|+|+|..+|...--+ ..+. .-=++||||.|+.
T Consensus 89 ~l~~~~~--~~Dll~iEs~G--NL~~~--~sp~L~d~~~v~VidvteGe~~P~K~gP~i~------~aDllVInK~DLa 155 (202)
T COG0378 89 ELVLDFP--DLDLLFIESVG--NLVCP--FSPDLGDHLRVVVIDVTEGEDIPRKGGPGIF------KADLLVINKTDLA 155 (202)
T ss_pred HHhhcCC--cCCEEEEecCc--ceecc--cCcchhhceEEEEEECCCCCCCcccCCCcee------EeeEEEEehHHhH
Confidence 2222222 25788899998 32211 1223446 88999999998532211 0000 0227899999995
No 401
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=96.71 E-value=0.0023 Score=63.47 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=21.2
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHH
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
..+++++ +|..++|||||+++|...
T Consensus 114 ~~~~~~~---~G~~~vGKstlin~l~~~ 138 (171)
T cd01856 114 RGIRAMV---VGIPNVGKSTLINRLRGK 138 (171)
T ss_pred CCeEEEE---ECCCCCCHHHHHHHHhCC
Confidence 3467888 999999999999999643
No 402
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=96.68 E-value=0.01 Score=51.15 Aligned_cols=50 Identities=16% Similarity=0.318 Sum_probs=40.4
Q ss_pred eeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEe
Q 003378 385 FAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 447 (824)
Q Consensus 385 l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~ 447 (824)
...+||.+|+++.||+|++++.+ . ..+|+.|... ..+++.|.|||.+++.
T Consensus 17 ~v~Gkv~~G~v~~Gd~v~~~P~~----~-----~~~V~si~~~----~~~~~~a~aGd~v~l~ 66 (81)
T cd03695 17 GYAGTIASGSIRVGDEVVVLPSG----K-----TSRVKSIETF----DGELDEAGAGESVTLT 66 (81)
T ss_pred EEEEEEccceEECCCEEEEcCCC----C-----eEEEEEEEEC----CcEeCEEcCCCEEEEE
Confidence 68999999999999999986532 1 2688888643 4679999999999874
No 403
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=96.66 E-value=0.0047 Score=64.23 Aligned_cols=90 Identities=21% Similarity=0.182 Sum_probs=51.8
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
....-|+| +|..++|||||+|+|+.......- | +.. .---+||-+-.. .+.
T Consensus 5 ~~v~vvsv---~G~~~sGKS~llN~l~~~~~~f~~---~-----~~~-~~~T~gi~~~~~----~~~------------- 55 (224)
T cd01851 5 FPVAVVSV---FGPQSSGKSFLLNHLFGTLSGFDV---M-----DTS-QQTTKGIWMWSV----PFK------------- 55 (224)
T ss_pred CCEEEEEE---ECCCCCCHHHHHHHHhCCCCCeEe---c-----CCC-CCCccceEEEec----ccc-------------
Confidence 34456788 999999999999999655211111 1 100 000123322111 110
Q ss_pred CCCceeEEEEcCCCccch------HHHHHHHHHh--cCEEEEEEeCC
Q 003378 86 QGNEYLINLIDSPGHVDF------SSEVTAALRI--TDGALVVVDCI 124 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df------~~e~~~~l~~--~D~avlvvd~~ 124 (824)
.+.+..+.++||||..+- ......++.. +|..|+.++..
T Consensus 56 ~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~ 102 (224)
T cd01851 56 LGKEHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWET 102 (224)
T ss_pred CCCcceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCc
Confidence 123578999999997543 2234555555 89888888765
No 404
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.65 E-value=0.0053 Score=68.73 Aligned_cols=65 Identities=18% Similarity=0.225 Sum_probs=38.2
Q ss_pred CceeEEEEcCCCccchH----HHHHHHHHh-----cCEEEEEEeCCCCcchhHHHHHHHHHhCCCc-eEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFS----SEVTAALRI-----TDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~----~e~~~~l~~-----~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p-~ilviNKiD~~ 155 (824)
.++.+.||||||+.... .++..-++. ..-.+||+|++.|-... ..+++.- ..++ -=++++|+|-.
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~-~~~~~~f--~~~~~~glIlTKLDEt 372 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHT-LTVLKAY--ESLNYRRILLTKLDEA 372 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHH-HHHHHHh--cCCCCCEEEEEcccCC
Confidence 46788999999975322 233333332 23578999998764322 2222222 2233 34899999975
No 405
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=96.64 E-value=0.002 Score=67.94 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=18.8
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
.+++ +|++|+|||||+++|+..
T Consensus 122 ~~~~---~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 122 ISVF---AGQSGVGKSSLINALDPS 143 (245)
T ss_pred EEEE---ECCCCCCHHHHHHHHhhh
Confidence 4566 899999999999999754
No 406
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.62 E-value=0.0036 Score=60.96 Aligned_cols=51 Identities=20% Similarity=0.204 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 105 SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 105 ~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
......++.+|.+|+|+|+.++...+...+...+...+.|+++|+||+|+.
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~ 54 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLV 54 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhC
Confidence 345566777999999999998877777777666666789999999999986
No 407
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.62 E-value=0.0024 Score=70.06 Aligned_cols=59 Identities=29% Similarity=0.297 Sum_probs=40.9
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|.+ +|-+++|||||+++|+........... |+|-....+.+
T Consensus 130 ~~~~~v~v---vG~PNVGKSslIN~L~~k~~~~~s~~P---------------G~Tk~~q~i~~---------------- 175 (322)
T COG1161 130 KRKIRVGV---VGYPNVGKSTLINRLLGKKVAKTSNRP---------------GTTKGIQWIKL---------------- 175 (322)
T ss_pred ccceEEEE---EcCCCCcHHHHHHHHhcccceeeCCCC---------------ceecceEEEEc----------------
Confidence 45678888 999999999999999765553332222 45554443332
Q ss_pred CCCceeEEEEcCCCcc
Q 003378 86 QGNEYLINLIDSPGHV 101 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~ 101 (824)
+..+.|+||||..
T Consensus 176 ---~~~i~LlDtPGii 188 (322)
T COG1161 176 ---DDGIYLLDTPGII 188 (322)
T ss_pred ---CCCeEEecCCCcC
Confidence 3458999999964
No 408
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.62 E-value=0.011 Score=53.27 Aligned_cols=45 Identities=24% Similarity=0.163 Sum_probs=33.2
Q ss_pred eeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH
Q 003378 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR 136 (824)
Q Consensus 90 ~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~ 136 (824)
+.+.+||||+..+ .....++..+|.+++++++...-......+++
T Consensus 40 ~d~viiD~p~~~~--~~~~~~l~~ad~viv~~~~~~~s~~~~~~~~~ 84 (104)
T cd02042 40 YDYIIIDTPPSLG--LLTRNALAAADLVLIPVQPSPLDLDGLEKLLE 84 (104)
T ss_pred CCEEEEeCcCCCC--HHHHHHHHHCCEEEEeccCCHHHHHHHHHHHH
Confidence 5688999999765 44558899999999999987544444444443
No 409
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=96.61 E-value=0.011 Score=53.37 Aligned_cols=89 Identities=18% Similarity=0.213 Sum_probs=57.4
Q ss_pred CCCCeEEEEEEeeecC--------CCCcceeEEEEEeeeecCCCEEEEcCCCC--CCCCcc-ccceeeeceEEEEecCce
Q 003378 364 PEGPLMLYVSKMIPAS--------DKGRFFAFGRVFSGKVATGLKVRIMGPNY--VPGEKK-DLYVKSVQRTVIWMGKKQ 432 (824)
Q Consensus 364 ~~~p~va~VfK~~~~~--------~~g~~l~~~RV~sG~Lk~g~~v~v~~~~~--~~~~~~-~~~~~ki~~l~~~~G~~~ 432 (824)
.+.|+.++|...+... -+|. ++-++|.+|.|+.||+|.+..--. ..++.. .....+|..|+. ..
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~Gg-VigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~----~~ 76 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGG-VAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKA----EN 76 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceee-EEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEe----cC
Confidence 3467777877777644 3455 899999999999999997642100 000000 111245666654 34
Q ss_pred eeeccccCCCEEEE-eccccccccce
Q 003378 433 ETVEDVPCGNTVAM-VGLDQYITKNA 457 (824)
Q Consensus 433 ~~v~~a~AGdIvai-~gl~~~~~~tg 457 (824)
..+++|.||+.++| ++|+..+++..
T Consensus 77 ~~l~~a~pGgliGvgT~Ldpsltk~D 102 (113)
T cd03688 77 NDLQEAVPGGLIGVGTKLDPTLTKAD 102 (113)
T ss_pred ccccEEeCCCeEEEccccCccccccc
Confidence 67999999999998 56776655543
No 410
>PRK12289 GTPase RsgA; Reviewed
Probab=96.57 E-value=0.0017 Score=71.80 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=18.8
Q ss_pred EEeecCccCCCCCHHHHHHHHHHHc
Q 003378 11 VCLGPDANSTFAGKSTLTDSLVAAA 35 (824)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~ll~~~ 35 (824)
+++ +|++|+|||||+|+|+...
T Consensus 175 ~v~---iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 175 TVV---AGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred EEE---EeCCCCCHHHHHHHHcCcc
Confidence 566 8999999999999997543
No 411
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=96.56 E-value=0.0046 Score=67.81 Aligned_cols=67 Identities=13% Similarity=0.093 Sum_probs=53.0
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCc-----------chhHHHHHHHHHh----CCCceEEEEeCCC
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-----------CVQTETVLRQALG----ERIRPVLTVNKMD 153 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv-----------~~~t~~~l~~~~~----~~~p~ilviNKiD 153 (824)
+..+.++|++|+..+..-.......++++++|||.++-. ...+...++.+.. .++|++|++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 788999999999988888889999999999999998632 2233344444333 4789999999999
Q ss_pred cc
Q 003378 154 RC 155 (824)
Q Consensus 154 ~~ 155 (824)
+.
T Consensus 240 ~f 241 (317)
T cd00066 240 LF 241 (317)
T ss_pred HH
Confidence 87
No 412
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.48 E-value=0.013 Score=62.52 Aligned_cols=64 Identities=14% Similarity=0.091 Sum_probs=38.8
Q ss_pred CceeEEEEcCCCccch----HHHHHHHHHh--cCEEEEEEeCCCCcchhHHHHHHHHHhCC-Cc-eEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDF----SSEVTAALRI--TDGALVVVDCIEGVCVQTETVLRQALGER-IR-PVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df----~~e~~~~l~~--~D~avlvvd~~~gv~~~t~~~l~~~~~~~-~p-~ilviNKiD~~ 155 (824)
.++.+.||||||.... ..++...++. .|-.+||+|++.+-. .+..++..++ ++ -=++++|+|-.
T Consensus 153 ~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~----d~~~~~~~f~~~~~~~~I~TKlDet 224 (270)
T PRK06731 153 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK----DMIEIITNFKDIHIDGIVFTKFDET 224 (270)
T ss_pred CCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH----HHHHHHHHhCCCCCCEEEEEeecCC
Confidence 3578899999998643 3344443333 456899999874322 2222333322 33 23899999986
No 413
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=96.46 E-value=0.0077 Score=66.65 Aligned_cols=67 Identities=12% Similarity=0.127 Sum_probs=53.8
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCC-----------cchhHHHHHHHHHh----CCCceEEEEeCCC
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-----------VCVQTETVLRQALG----ERIRPVLTVNKMD 153 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~g-----------v~~~t~~~l~~~~~----~~~p~ilviNKiD 153 (824)
+..+.++|..|+..+..-.......++++|+|||.++- ....+...|+.+.. .++|++|++||.|
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D 262 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID 262 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence 67899999999999888899999999999999999862 22334445555443 4679999999999
Q ss_pred cc
Q 003378 154 RC 155 (824)
Q Consensus 154 ~~ 155 (824)
+.
T Consensus 263 ~~ 264 (342)
T smart00275 263 LF 264 (342)
T ss_pred hH
Confidence 87
No 414
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.41 E-value=0.0028 Score=68.45 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.0
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
.+++ +|+.|+|||||+++|+..
T Consensus 163 ~~~~---~G~sg~GKSTlin~l~~~ 184 (287)
T cd01854 163 TSVL---VGQSGVGKSTLINALLPD 184 (287)
T ss_pred eEEE---ECCCCCCHHHHHHHHhch
Confidence 5677 999999999999999654
No 415
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.38 E-value=0.0089 Score=66.20 Aligned_cols=140 Identities=16% Similarity=0.160 Sum_probs=74.3
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecC-Chh--hHhHhccceeeceEEEEEeechhhhhcc--
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTD-TRQ--DEAERGITIKSTGISLYYEMTDAALKSY-- 81 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D-~~~--~E~~rgiTi~~~~~~~~~~~~~~~~~~~-- 81 (824)
.+..|-+ +|--||||||.+..|..+-.. .....+ ....| ++| -||=+...-...+-.|.. .+...+..+
T Consensus 99 ~P~vImm---vGLQGsGKTTt~~KLA~~lkk-~~~kvl-lVaaD~~RpAA~eQL~~La~q~~v~~f~~-~~~~~Pv~Iak 172 (451)
T COG0541 99 PPTVILM---VGLQGSGKTTTAGKLAKYLKK-KGKKVL-LVAADTYRPAAIEQLKQLAEQVGVPFFGS-GTEKDPVEIAK 172 (451)
T ss_pred CCeEEEE---EeccCCChHhHHHHHHHHHHH-cCCceE-EEecccCChHHHHHHHHHHHHcCCceecC-CCCCCHHHHHH
Confidence 3455666 999999999999999644322 110011 11112 122 233222222222222211 111111111
Q ss_pred --ccccCCCceeEEEEcCCCcc----chHHHHHHH--HHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceE-EEEeCC
Q 003378 82 --RGERQGNEYLINLIDSPGHV----DFSSEVTAA--LRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKM 152 (824)
Q Consensus 82 --~~~~~~~~~~i~liDTPGh~----df~~e~~~~--l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~i-lviNKi 152 (824)
........+.+.||||+|.. +.+.|+..- .-..|=.++|+||.-| |...-...+....+++- ++++|+
T Consensus 173 ~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G---QdA~~~A~aF~e~l~itGvIlTKl 249 (451)
T COG0541 173 AALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG---QDAVNTAKAFNEALGITGVILTKL 249 (451)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc---hHHHHHHHHHhhhcCCceEEEEcc
Confidence 12234456789999999954 344444332 3355889999999876 33322233445667766 899999
Q ss_pred Ccc
Q 003378 153 DRC 155 (824)
Q Consensus 153 D~~ 155 (824)
|-.
T Consensus 250 DGd 252 (451)
T COG0541 250 DGD 252 (451)
T ss_pred cCC
Confidence 964
No 416
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=96.38 E-value=0.0039 Score=69.59 Aligned_cols=114 Identities=15% Similarity=0.115 Sum_probs=60.4
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
.+|.+ +|.+|+|||||+++|+......... .++.+ ..|.|..... +..
T Consensus 155 ~~v~~---vG~~nvGKStliN~l~~~~~~~~~~----~~~s~------~pgtT~~~~~--~~~----------------- 202 (360)
T TIGR03597 155 KDVYV---VGVTNVGKSSLINKLLKQNNGDKDV----ITTSP------FPGTTLDLIE--IPL----------------- 202 (360)
T ss_pred CeEEE---ECCCCCCHHHHHHHHHhhccCCcce----eeecC------CCCeEeeEEE--EEe-----------------
Confidence 36888 9999999999999998754321110 01111 1345554332 222
Q ss_pred ceeEEEEcCCCccchHHHHHHHH-----------HhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAAL-----------RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l-----------~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+..+.++||||..... .+...+ .......+.++....+......-+......+..+.++++|-+..
T Consensus 203 ~~~~~l~DtPG~~~~~-~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~ 279 (360)
T TIGR03597 203 DDGHSLYDTPGIINSH-QMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNI 279 (360)
T ss_pred CCCCEEEECCCCCChh-HhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCcee
Confidence 2246799999976432 111111 22345666666554322221111122223345567888887776
No 417
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.38 E-value=0.0098 Score=68.16 Aligned_cols=21 Identities=38% Similarity=0.357 Sum_probs=18.3
Q ss_pred EEEeecCccCCCCCHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
-+++ +|..|+||||++..|..
T Consensus 258 Vi~L---vGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 258 VFAL---MGPTGVGKTTTTAKLAA 278 (484)
T ss_pred EEEE---ECCCCccHHHHHHHHHH
Confidence 4667 99999999999999964
No 418
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.35 E-value=0.0035 Score=62.72 Aligned_cols=82 Identities=20% Similarity=0.136 Sum_probs=44.7
Q ss_pred ceeEEEEcCCCccchHHH-----HHHHHHhcCEEEEEEeCCCCcch-hH-HHHHHHHHhCCCceEEEEeCCCcchhcccC
Q 003378 89 EYLINLIDSPGHVDFSSE-----VTAALRITDGALVVVDCIEGVCV-QT-ETVLRQALGERIRPVLTVNKMDRCFLELQV 161 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e-----~~~~l~~~D~avlvvd~~~gv~~-~t-~~~l~~~~~~~~p~ilviNKiD~~~~~~~~ 161 (824)
.....||-|.|-.+...- .....-..+.+|.|||+..-... .. ..+..|+.. -=++++||+|+.
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~---ADvIvlnK~D~~------ 154 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF---ADVIVLNKIDLV------ 154 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT----SEEEEE-GGGH------
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchh---cCEEEEeccccC------
Confidence 456778999996653322 22223356899999999653111 11 222334433 348999999998
Q ss_pred CHHHHHHHHHHHHHHhhh
Q 003378 162 DGEEAYQTFQKVIENANV 179 (824)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~ 179 (824)
+.++..+++++.+.++|.
T Consensus 155 ~~~~~i~~~~~~ir~lnp 172 (178)
T PF02492_consen 155 SDEQKIERVREMIRELNP 172 (178)
T ss_dssp HHH--HHHHHHHHHHH-T
T ss_pred ChhhHHHHHHHHHHHHCC
Confidence 323334566666666553
No 419
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.35 E-value=0.0049 Score=60.04 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=19.5
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHH
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLV 32 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll 32 (824)
..++++ +|..++|||||+++|.
T Consensus 101 ~~~~~~---ig~~~~Gkssl~~~l~ 122 (156)
T cd01859 101 EGKVGV---VGYPNVGKSSIINALK 122 (156)
T ss_pred CcEEEE---ECCCCCCHHHHHHHHh
Confidence 456778 9999999999999996
No 420
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.32 E-value=0.0079 Score=67.86 Aligned_cols=64 Identities=16% Similarity=0.093 Sum_probs=36.2
Q ss_pred ceeEEEEcCCCccchHHHHH---HHHHh---cCEEEEEEeCCCCcchhHHHHHHHHHhCCCce-EEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVT---AALRI---TDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~---~~l~~---~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~-ilviNKiD~~ 155 (824)
++.+.+|||+|......+.. ..+.. .+-.+||+|++.+-..-. .++.... .+++ =++++|+|-.
T Consensus 269 ~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~-~~~~~f~--~~~~~~~I~TKlDEt 339 (420)
T PRK14721 269 GKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLD-EVISAYQ--GHGIHGCIITKVDEA 339 (420)
T ss_pred CCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHH-HHHHHhc--CCCCCEEEEEeeeCC
Confidence 56788999999765333222 22222 235789999985432221 2222211 2333 3889999976
No 421
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.28 E-value=0.0061 Score=65.50 Aligned_cols=56 Identities=20% Similarity=0.309 Sum_probs=45.7
Q ss_pred CCcc-chHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 98 PGHV-DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 98 PGh~-df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
|||. ....++...+..+|.+++|+|+..........+.+.+ .+.|+|+|+||+|+.
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~ 61 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLA 61 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccC
Confidence 8886 4667899999999999999999887766665555544 368999999999986
No 422
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=96.27 E-value=0.0058 Score=60.63 Aligned_cols=57 Identities=18% Similarity=0.250 Sum_probs=45.1
Q ss_pred CCCcc-chHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 97 SPGHV-DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 97 TPGh~-df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
=|||. .-..++..++..+|.+++|+|+.++.......++..+ .+.|+++++||+|+.
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~ 59 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLA 59 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcC
Confidence 37775 4667889999999999999999987766555554443 367999999999986
No 423
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.27 E-value=0.027 Score=61.66 Aligned_cols=133 Identities=17% Similarity=0.141 Sum_probs=67.2
Q ss_pred ccCCCCCHHHHHHHHHHHcC-----CcccccCCceeecCChhhHhH--hccceeeceEEEEEeechh-hhhccccccC--
Q 003378 17 ANSTFAGKSTLTDSLVAAAG-----IIAQEVAGDVRMTDTRQDEAE--RGITIKSTGISLYYEMTDA-ALKSYRGERQ-- 86 (824)
Q Consensus 17 ~G~~~~GKTTL~~~ll~~~g-----~i~~~~~g~~~~~D~~~~E~~--rgiTi~~~~~~~~~~~~~~-~~~~~~~~~~-- 86 (824)
.|-.|||||||+++|+.... .+.. ..|++ -.|..-.+.. .-+++...++.+....+.. .+..+.....
T Consensus 10 tGFLGaGKTTll~~ll~~~~~~riaVi~N-EfG~v-~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~~~~~~ 87 (318)
T PRK11537 10 TGFLGAGKTTLLRHILNEQHGYKIAVIEN-EFGEV-SVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNLDKG 87 (318)
T ss_pred EECCCCCHHHHHHHHHhcccCCccccccc-CcCCc-cccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHHHHhcc
Confidence 59999999999999986532 1111 13422 1222111110 1122223333332221111 2222221111
Q ss_pred CCceeEEEEcCCCccchHHHHHHHH---------HhcCEEEEEEeCCCCcchhH--HHHHHHHHhCCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAAL---------RITDGALVVVDCIEGVCVQT--ETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l---------~~~D~avlvvd~~~gv~~~t--~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
.......+|-|-|-.+-. .+...+ -..|++|.|||+..+..... .....|+.... +|++||+|+.
T Consensus 88 ~~~~d~IvIEttG~a~p~-~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~AD---~IvlnK~Dl~ 163 (318)
T PRK11537 88 NIQFDRLVIECTGMADPG-PIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYAD---RILLTKTDVA 163 (318)
T ss_pred CCCCCEEEEECCCccCHH-HHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhCC---EEEEeccccC
Confidence 113556789999998743 222222 13589999999986532211 12223444333 8999999988
No 424
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.15 E-value=0.02 Score=65.24 Aligned_cols=65 Identities=15% Similarity=0.184 Sum_probs=38.5
Q ss_pred ceeEEEEcCCCccchH----HHHHHHHH---hcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFS----SEVTAALR---ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~----~e~~~~l~---~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
++.+.||||||+..+. .++...+. .-+-+.+|+++..+.. ....+++.....++ --++++|+|..
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~-~l~~~~~~f~~~~~-~~vI~TKlDet 370 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYE-DLKDIYKHFSRLPL-DGLIFTKLDET 370 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHH-HHHHHHHHhCCCCC-CEEEEeccccc
Confidence 5789999999986543 23333333 2236688999875432 22233343333332 24889999975
No 425
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=96.15 E-value=0.022 Score=63.00 Aligned_cols=98 Identities=22% Similarity=0.189 Sum_probs=56.9
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcC-CcccccCCceeecCChhhHhHhccceeeceEEEEEeechh-hhhccccccC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG-IIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDA-ALKSYRGERQ 86 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g-~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~-~~~~~~~~~~ 86 (824)
.+++| +|.+++|||||.++|..... .+.. ..+ .|+......+.+..... .+..+.++.+
T Consensus 3 lk~Gi---vGlPn~GKSTlfnaLT~~~~~~~a~--------ypf--------tTi~p~~g~v~v~d~r~d~L~~~~~~~~ 63 (368)
T TIGR00092 3 LSGGI---VGLPNVGKSTLFAATTNLLGNEAAN--------PPF--------TTIEPNAGVVNPSDPRLDLLAIYIKPEK 63 (368)
T ss_pred ceEEE---ECCCCCChHHHHHHHhCCCccccCC--------CCC--------CCCCCceeEEEechhHHHHHHHHhCCcC
Confidence 57888 99999999999999943222 1110 000 12222222222211000 0111112222
Q ss_pred CCceeEEEEcCCCccc-------hHHHHHHHHHhcCEEEEEEeCCC
Q 003378 87 GNEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 125 (824)
Q Consensus 87 ~~~~~i~liDTPGh~d-------f~~e~~~~l~~~D~avlvvd~~~ 125 (824)
-....+.++|.||-.. +......-+|.+|+.+.|||+.+
T Consensus 64 ~~~a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 64 VPPTTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cCCceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 2345789999999754 44567888999999999999964
No 426
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=96.14 E-value=0.038 Score=61.17 Aligned_cols=63 Identities=22% Similarity=0.141 Sum_probs=40.1
Q ss_pred ceeEEEEcCCCccchHHHHHHHH--------HhcCEEEEEEeCCCCcchh------------------------HHHHHH
Q 003378 89 EYLINLIDSPGHVDFSSEVTAAL--------RITDGALVVVDCIEGVCVQ------------------------TETVLR 136 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l--------~~~D~avlvvd~~~gv~~~------------------------t~~~l~ 136 (824)
.....+|.|.|..+-.. +...+ -..|++|.|||+....... ......
T Consensus 92 ~~d~IvIEtsG~a~P~~-i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (341)
T TIGR02475 92 RPDHILIETSGLALPKP-LVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFED 170 (341)
T ss_pred CCCEEEEeCCCCCCHHH-HHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHH
Confidence 35677899999988543 33332 2568999999998543210 012234
Q ss_pred HHHhCCCceEEEEeCCCcc
Q 003378 137 QALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 137 ~~~~~~~p~ilviNKiD~~ 155 (824)
|+... =+|++||+|+.
T Consensus 171 Qi~~A---D~IvlnK~Dl~ 186 (341)
T TIGR02475 171 QLACA---DLVILNKADLL 186 (341)
T ss_pred HHHhC---CEEEEeccccC
Confidence 44433 38999999988
No 427
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=96.12 E-value=0.021 Score=61.03 Aligned_cols=65 Identities=26% Similarity=0.290 Sum_probs=43.3
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHH----hCCCceE-EEEeCCCc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL----GERIRPV-LTVNKMDR 154 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~----~~~~p~i-lviNKiD~ 154 (824)
.|.+.||||||.... ..+..++..||.+|+++.+..--...+..+++.+. ..+++.. +|+|++|.
T Consensus 115 ~yD~vIIDt~g~~~~-~~~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 115 EYDVILFDVLGDVVC-GGFAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred cCCEEEEeCCCCccc-ccchhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 588999999987542 23455689999999999886433333334433332 3455544 78999984
No 428
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.12 E-value=0.039 Score=61.86 Aligned_cols=66 Identities=15% Similarity=0.164 Sum_probs=40.9
Q ss_pred CceeEEEEcCCCccc----hHHHHHHHHHhc--C-EEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVD----FSSEVTAALRIT--D-GALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~d----f~~e~~~~l~~~--D-~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
.++.+.||||||... ...++..-+..+ + -.+||+||+.|-.... .++......+ +-=++++|+|-.
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~-~~~~~~~~~~-~~~~I~TKlDet 325 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK-EIFHQFSPFS-YKTVIFTKLDET 325 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH-HHHHHhcCCC-CCEEEEEeccCC
Confidence 467899999999743 223454554433 3 5889999998733222 3433332222 234889999975
No 429
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=96.03 E-value=0.04 Score=47.79 Aligned_cols=57 Identities=21% Similarity=0.328 Sum_probs=44.0
Q ss_pred CCCcceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEe
Q 003378 380 DKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 447 (824)
Q Consensus 380 ~~g~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~ 447 (824)
..|. ++.+||-+|++++|+.+.+++.+ +.++.-+|..|... ..++++|.+|+-|.|.
T Consensus 13 ~~g~-vag~kV~~G~l~~g~~v~vlr~~------~~~~~g~i~sl~~~----~~~v~~a~~G~ecgi~ 69 (84)
T cd03692 13 KVGN-IAGCYVTDGKIKRNAKVRVLRNG------EVIYEGKISSLKRF----KDDVKEVKKGYECGIT 69 (84)
T ss_pred CCcE-EEEEEEEECEEeCCCEEEEEcCC------CEEEEEEEEEEEEc----CcccCEECCCCEEEEE
Confidence 4455 99999999999999999997632 11233577777754 5779999999999884
No 430
>PRK10818 cell division inhibitor MinD; Provisional
Probab=95.98 E-value=0.023 Score=60.72 Aligned_cols=66 Identities=15% Similarity=0.247 Sum_probs=48.3
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhC---------CCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE---------RIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~---------~~p~ilviNKiD~~ 155 (824)
..|.+.+||||+... .....++..+|.+|+|+++..--...+..+++.+... +.+..+++|++|..
T Consensus 112 ~~yd~viiD~p~~~~--~~~~~~l~~ad~vivv~~p~~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~ 186 (270)
T PRK10818 112 MDFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (270)
T ss_pred cCCCEEEEeCCCCcc--HHHHHHHHhCCeEEEEcCCCchHHHhHHHHHHHHHHhhccccccccccceEEEEeccCHh
Confidence 468999999998875 4567788999999999998865555566666665421 22346889999864
No 431
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=95.97 E-value=0.021 Score=60.68 Aligned_cols=112 Identities=25% Similarity=0.232 Sum_probs=69.0
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
-|++ +|-.|+|||||+.+|. .+....+. . -...+|. |..++ .. .++
T Consensus 180 viav---VGYTNaGKsTLikaLT-~Aal~p~d-r-LFATLDp---------T~h~a----~L---------------psg 225 (410)
T KOG0410|consen 180 VIAV---VGYTNAGKSTLIKALT-KAALYPND-R-LFATLDP---------TLHSA----HL---------------PSG 225 (410)
T ss_pred eEEE---EeecCccHHHHHHHHH-hhhcCccc-h-hheeccc---------hhhhc----cC---------------CCC
Confidence 4667 9999999999999995 22222221 0 0112332 11111 11 236
Q ss_pred eeEEEEcCCCccc-h----HH---HHHHHHHhcCEEEEEEeCCCC-cchhHHHHHHHHHhCCCce-------EEEEeCCC
Q 003378 90 YLINLIDSPGHVD-F----SS---EVTAALRITDGALVVVDCIEG-VCVQTETVLRQALGERIRP-------VLTVNKMD 153 (824)
Q Consensus 90 ~~i~liDTPGh~d-f----~~---e~~~~l~~~D~avlvvd~~~g-v~~~t~~~l~~~~~~~~p~-------ilviNKiD 153 (824)
.-+.+.||-|... + .. .+..-...+|..+=|+|.++- ...|-+.++.-+...++|. |=|=||+|
T Consensus 226 ~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD 305 (410)
T KOG0410|consen 226 NFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKID 305 (410)
T ss_pred cEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccc
Confidence 6788999999642 1 11 122233578999999998874 5667778888888888862 33556666
Q ss_pred cc
Q 003378 154 RC 155 (824)
Q Consensus 154 ~~ 155 (824)
..
T Consensus 306 ~e 307 (410)
T KOG0410|consen 306 YE 307 (410)
T ss_pred cc
Confidence 54
No 432
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=95.94 E-value=0.015 Score=56.66 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=33.5
Q ss_pred CEEEEEEeCCCCcchhHHHHH-HHHHhCCCceEEEEeCCCcc
Q 003378 115 DGALVVVDCIEGVCVQTETVL-RQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 115 D~avlvvd~~~gv~~~t~~~l-~~~~~~~~p~ilviNKiD~~ 155 (824)
|.+|+|+|+.+........+. ..+...++|+|+|+||+|+.
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~ 42 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLV 42 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcC
Confidence 789999999887766666555 45667789999999999986
No 433
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=95.92 E-value=0.079 Score=55.61 Aligned_cols=64 Identities=28% Similarity=0.284 Sum_probs=41.6
Q ss_pred eeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHHh--CCCceEEEEeCCCcc
Q 003378 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG--ERIRPVLTVNKMDRC 155 (824)
Q Consensus 90 ~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~~~~~--~~~p~ilviNKiD~~ 155 (824)
+.+.+||||+... ..+..++..+|.+|+++.+..--..... .+.+.... ...+.-+|+|+.|.-
T Consensus 115 ~D~viiD~pp~~~--~~~~~~l~~ad~vii~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~~ 181 (246)
T TIGR03371 115 RDWVLIDVPRGPS--PITRQALAAADLVLVVVNADAACYATLHQQALALFAGSGPRIGPHFLINQFDPA 181 (246)
T ss_pred CCEEEEECCCCch--HHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHHHhhcccccccceEEeeccCcc
Confidence 4789999999543 5677889999999999987532112222 12222221 233455899999864
No 434
>PRK13796 GTPase YqeH; Provisional
Probab=95.84 E-value=0.01 Score=66.30 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=20.6
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHc
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAA 35 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~ 35 (824)
.++.+ +|.+|+|||||+|+|+...
T Consensus 161 ~~v~v---vG~~NvGKSTLiN~L~~~~ 184 (365)
T PRK13796 161 RDVYV---VGVTNVGKSTLINRIIKEI 184 (365)
T ss_pred CeEEE---EcCCCCcHHHHHHHHHhhc
Confidence 36788 9999999999999998643
No 435
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.76 E-value=0.026 Score=60.68 Aligned_cols=136 Identities=21% Similarity=0.210 Sum_probs=73.5
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHH---cCCcccccCCcee---ecCChhh-HhHhccceeeceEEEEEeechh--
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAA---AGIIAQEVAGDVR---MTDTRQD-EAERGITIKSTGISLYYEMTDA-- 76 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~---~g~i~~~~~g~~~---~~D~~~~-E~~rgiTi~~~~~~~~~~~~~~-- 76 (824)
.++.-|.+ +|=.|+||||.+..|.+. .|.-.--.+|++. ..+.... -.+-|+.+ ++-....+..
T Consensus 137 ~~p~Vil~---vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~v----I~~~~G~DpAaV 209 (340)
T COG0552 137 KKPFVILF---VGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPV----ISGKEGADPAAV 209 (340)
T ss_pred CCcEEEEE---EecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeE----EccCCCCCcHHH
Confidence 45667777 999999999999999543 2321111123211 1111111 01123322 2212221111
Q ss_pred hhhccccccCCCceeEEEEcCCCc----cchHHHHHHHHHhcC---E-----EEEEEeCCCCcchhHHHHHHHHHhC--C
Q 003378 77 ALKSYRGERQGNEYLINLIDSPGH----VDFSSEVTAALRITD---G-----ALVVVDCIEGVCVQTETVLRQALGE--R 142 (824)
Q Consensus 77 ~~~~~~~~~~~~~~~i~liDTPGh----~df~~e~~~~l~~~D---~-----avlvvd~~~gv~~~t~~~l~~~~~~--~ 142 (824)
.++. -++...+++.+.||||+|. .+++.|...-.|++. . .++|+||+-|-.. +.|+... -
T Consensus 210 afDA-i~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqna-----l~QAk~F~ea 283 (340)
T COG0552 210 AFDA-IQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNA-----LSQAKIFNEA 283 (340)
T ss_pred HHHH-HHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhH-----HHHHHHHHHh
Confidence 0111 1123346789999999994 468888777776653 3 7778899977432 3333322 2
Q ss_pred CceE-EEEeCCCc
Q 003378 143 IRPV-LTVNKMDR 154 (824)
Q Consensus 143 ~p~i-lviNKiD~ 154 (824)
+++- ++++|+|-
T Consensus 284 v~l~GiIlTKlDg 296 (340)
T COG0552 284 VGLDGIILTKLDG 296 (340)
T ss_pred cCCceEEEEeccc
Confidence 3433 88999994
No 436
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=95.69 E-value=0.031 Score=61.09 Aligned_cols=93 Identities=25% Similarity=0.332 Sum_probs=55.0
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccc-------cCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcc
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE-------VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSY 81 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~-------~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~ 81 (824)
++++| +|-+|+|||||.++|......+..- ..|.+.+.|.+-.+-..-.
T Consensus 3 l~~GI---VGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~--------------------- 58 (372)
T COG0012 3 LKIGI---VGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIV--------------------- 58 (372)
T ss_pred ceeEE---ecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhc---------------------
Confidence 67888 9999999999999994433211110 1122222232111111000
Q ss_pred ccccCCCceeEEEEcCCCccc-------hHHHHHHHHHhcCEEEEEEeCCC
Q 003378 82 RGERQGNEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 125 (824)
Q Consensus 82 ~~~~~~~~~~i~liDTPGh~d-------f~~e~~~~l~~~D~avlvvd~~~ 125 (824)
.++..-....+.|+|.+|-+. +-..-..-+|.+|+++-|||+.+
T Consensus 59 ~c~~k~~~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 59 KCPPKIRPAPVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred CCCCcEEeeeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 001111234688999999754 33445677899999999999984
No 437
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=95.68 E-value=0.011 Score=60.47 Aligned_cols=83 Identities=28% Similarity=0.322 Sum_probs=54.8
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
-+|++ +|-+.+|||||+..+....... ++ . .+ .|...-.-.+.| +
T Consensus 63 aRVal---IGfPSVGKStlLs~iT~T~Sea----A~-y---eF--------TTLtcIpGvi~y----------------~ 107 (364)
T KOG1486|consen 63 ARVAL---IGFPSVGKSTLLSKITSTHSEA----AS-Y---EF--------TTLTCIPGVIHY----------------N 107 (364)
T ss_pred eEEEE---ecCCCccHHHHHHHhhcchhhh----hc-e---ee--------eEEEeecceEEe----------------c
Confidence 47889 9999999999999883222111 11 0 00 112222222334 3
Q ss_pred ceeEEEEcCCCccchH-------HHHHHHHHhcCEEEEEEeCCCC
Q 003378 89 EYLINLIDSPGHVDFS-------SEVTAALRITDGALVVVDCIEG 126 (824)
Q Consensus 89 ~~~i~liDTPGh~df~-------~e~~~~l~~~D~avlvvd~~~g 126 (824)
+-.|.++|-||...=. .+++...|-||.+++|+||...
T Consensus 108 ga~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 108 GANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred CceEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcc
Confidence 7899999999986522 2467778899999999999864
No 438
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=95.55 E-value=0.03 Score=55.66 Aligned_cols=41 Identities=27% Similarity=0.303 Sum_probs=34.6
Q ss_pred CEEEEEEeCCCCcchhHHHHHHH--HHhCCCceEEEEeCCCcc
Q 003378 115 DGALVVVDCIEGVCVQTETVLRQ--ALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 115 D~avlvvd~~~gv~~~t~~~l~~--~~~~~~p~ilviNKiD~~ 155 (824)
|.+++|+|+..........+.+. +...+.|+|+|+||+|+.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~ 43 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLV 43 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcC
Confidence 78999999999888777777776 344678999999999997
No 439
>PRK00098 GTPase RsgA; Reviewed
Probab=95.55 E-value=0.013 Score=63.57 Aligned_cols=21 Identities=38% Similarity=0.434 Sum_probs=18.3
Q ss_pred EEEeecCccCCCCCHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
.+++ +|++|+|||||+++|+.
T Consensus 166 ~~~~---~G~sgvGKStlin~l~~ 186 (298)
T PRK00098 166 VTVL---AGQSGVGKSTLLNALAP 186 (298)
T ss_pred eEEE---ECCCCCCHHHHHHHHhC
Confidence 4567 99999999999999964
No 440
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.55 E-value=0.028 Score=67.52 Aligned_cols=66 Identities=14% Similarity=0.113 Sum_probs=35.0
Q ss_pred ceeEEEEcCCCccchHHHHHHHHH------hcCEEEEEEeCCCCcchhHHHHHHHHHhC-CCc-eEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALR------ITDGALVVVDCIEGVCVQTETVLRQALGE-RIR-PVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~------~~D~avlvvd~~~gv~~~t~~~l~~~~~~-~~p-~ilviNKiD~~ 155 (824)
++.+.||||||......++..-+. ..+-.+||+|++.+...- ..+++..... .++ -=++++|+|-.
T Consensus 263 ~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l-~~i~~~f~~~~~~~i~glIlTKLDEt 336 (767)
T PRK14723 263 DKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTL-NEVVHAYRHGAGEDVDGCIITKLDEA 336 (767)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHH-HHHHHHHhhcccCCCCEEEEeccCCC
Confidence 557999999994322222222221 234689999998532211 1122221111 122 23889999975
No 441
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=95.49 E-value=0.016 Score=62.58 Aligned_cols=57 Identities=23% Similarity=0.339 Sum_probs=45.5
Q ss_pred CCCccc-hHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 97 SPGHVD-FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 97 TPGh~d-f~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
=|||.. -..++...+..+|.+|+|+|+..........+.... . +.|+++|+||+|+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~-~-~kp~iiVlNK~DL~ 64 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKII-G-NKPRLLILNKSDLA 64 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHh-C-CCCEEEEEEchhcC
Confidence 388864 456788999999999999999987776666554443 2 78999999999986
No 442
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=95.44 E-value=0.018 Score=58.17 Aligned_cols=56 Identities=16% Similarity=0.044 Sum_probs=42.4
Q ss_pred CCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 98 PGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 98 PGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
|.+..|...+..+++.+|++++|+|+.+........++. ...+.|+++|+||+|+.
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~--~~~~~~~ilV~NK~Dl~ 74 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRL--FGGNNPVILVGNKIDLL 74 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhHHH--hcCCCcEEEEEEchhcC
Confidence 444457888888999999999999998755444444422 34578999999999986
No 443
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.43 E-value=0.1 Score=58.88 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=25.2
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGII 38 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i 38 (824)
..+.+|+| +|+.++|||||+++|....|..
T Consensus 217 ~~~~~IvI---~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 217 FFVRTVAI---LGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred CCCcEEEE---EcCCCCCHHHHHHHHHHHhCCC
Confidence 34568999 9999999999999998776654
No 444
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=95.41 E-value=0.043 Score=56.05 Aligned_cols=67 Identities=18% Similarity=0.152 Sum_probs=52.7
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceE-EEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~i-lviNKiD~~ 155 (824)
+.+.+.|||||+... ..+....++.+|++|+|+++...-........+++.+.+.+++ +|+||.|..
T Consensus 126 ~~yD~ViiD~pp~~~-~~~~~~~~~~~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 126 KYFDYIIIDTPPIGT-VTDAAIIARACDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDIS 193 (204)
T ss_pred hcCCEEEEeCCCccc-cchHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCcccc
Confidence 467899999997322 2233445578999999999987777778888888888898877 899999976
No 445
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=95.36 E-value=0.062 Score=57.39 Aligned_cols=67 Identities=21% Similarity=0.218 Sum_probs=41.4
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHH----hCCCceE-EEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL----GERIRPV-LTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~----~~~~p~i-lviNKiD~~ 155 (824)
+.|.+.||||||...- ..+..++..||.+|+++.+.---...+..+++.+. ..+++.. +|+|+.|..
T Consensus 114 ~~yD~ViID~~~~~~~-~~~~~~l~aAD~vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~ 185 (268)
T TIGR01281 114 DDYDVILFDVLGDVVC-GGFATPLQYADYALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDAT 185 (268)
T ss_pred ccCCEEEEecCCcccc-CccccchhhcCEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCChH
Confidence 4689999999986431 12234688999999998764322223333333322 3455544 789998753
No 446
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.29 E-value=0.04 Score=61.07 Aligned_cols=130 Identities=18% Similarity=0.229 Sum_probs=66.5
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCccc-ccCCceeecCCh---hhHhHh------ccceeeceEEEEEeechhh
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQ-EVAGDVRMTDTR---QDEAER------GITIKSTGISLYYEMTDAA 77 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~-~~~g~~~~~D~~---~~E~~r------giTi~~~~~~~~~~~~~~~ 77 (824)
.-.|++ +|+.|+||||.+-.|.+....... ...| --.+|+. ..||-+ |+++... +.
T Consensus 203 ~~vi~L---VGPTGVGKTTTlAKLAar~~~~~~~~kVa-iITtDtYRIGA~EQLk~Ya~im~vp~~vv-----~~----- 268 (407)
T COG1419 203 KRVIAL---VGPTGVGKTTTLAKLAARYVMLKKKKKVA-IITTDTYRIGAVEQLKTYADIMGVPLEVV-----YS----- 268 (407)
T ss_pred CcEEEE---ECCCCCcHHHHHHHHHHHHHhhccCcceE-EEEeccchhhHHHHHHHHHHHhCCceEEe-----cC-----
Confidence 346778 999999999999999655442211 1122 1234432 233322 3333222 11
Q ss_pred hhccccc-cCCCceeEEEEcCCCccchH----HHHHHHHHhc--CEEEEEEeCCCCcchhHHHHHHHHHhCCC-ce-EEE
Q 003378 78 LKSYRGE-RQGNEYLINLIDSPGHVDFS----SEVTAALRIT--DGALVVVDCIEGVCVQTETVLRQALGERI-RP-VLT 148 (824)
Q Consensus 78 ~~~~~~~-~~~~~~~i~liDTPGh~df~----~e~~~~l~~~--D~avlvvd~~~gv~~~t~~~l~~~~~~~~-p~-ilv 148 (824)
++++... ..-.++.+.||||.|+.-.. .++...+..+ .-.-||++++. +.+.+-....+++. |+ -+.
T Consensus 269 ~~el~~ai~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~----K~~dlkei~~~f~~~~i~~~I 344 (407)
T COG1419 269 PKELAEAIEALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT----KYEDLKEIIKQFSLFPIDGLI 344 (407)
T ss_pred HHHHHHHHHHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc----chHHHHHHHHHhccCCcceeE
Confidence 1111110 01135689999999975433 3444444433 34557788753 22222222333333 32 278
Q ss_pred EeCCCcc
Q 003378 149 VNKMDRC 155 (824)
Q Consensus 149 iNKiD~~ 155 (824)
++|+|-.
T Consensus 345 ~TKlDET 351 (407)
T COG1419 345 FTKLDET 351 (407)
T ss_pred EEccccc
Confidence 9999976
No 447
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=95.23 E-value=0.23 Score=55.96 Aligned_cols=100 Identities=18% Similarity=0.188 Sum_probs=59.4
Q ss_pred hccceeeceEEEEEeechhhhhccccccCCCceeEEEEcCCCccc-------------hHHHHHHHHHhcCEEEEEEeCC
Q 003378 58 RGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVD-------------FSSEVTAALRITDGALVVVDCI 124 (824)
Q Consensus 58 rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~d-------------f~~e~~~~l~~~D~avlvvd~~ 124 (824)
-|-|+..-++++..+. .+-.++.++|.||... ........+....++|++|.-.
T Consensus 393 ~GkTVSnEvIsltVKG-------------PgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG 459 (980)
T KOG0447|consen 393 EGCTVSPETISLNVKG-------------PGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG 459 (980)
T ss_pred CCcccccceEEEeecC-------------CCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC
Confidence 3677777777666542 2345789999999632 2333445556777777776421
Q ss_pred C--CcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCHHHHHHHHHHHHH
Q 003378 125 E--GVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIE 175 (824)
Q Consensus 125 ~--gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~~~~~~~~ 175 (824)
. --......+..++.-.+...|+|++|+|+.- +--++|+. ++.|++
T Consensus 460 SVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAE-knlA~PdR----I~kIle 507 (980)
T KOG0447|consen 460 SVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAE-KNVASPSR----IQQIIE 507 (980)
T ss_pred CcchhhhhHHHHHHhcCCCCCeeEEEEeecchhh-hccCCHHH----HHHHHh
Confidence 1 1111112334566667888999999999861 11246665 555554
No 448
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.22 E-value=0.076 Score=57.80 Aligned_cols=131 Identities=17% Similarity=0.229 Sum_probs=67.5
Q ss_pred ccCCCCCHHHHHHHHHHHc---CCcccccCCce-e--ecCChhh-HhHhccceeeceEEEEEeechh-h-hhccccccCC
Q 003378 17 ANSTFAGKSTLTDSLVAAA---GIIAQEVAGDV-R--MTDTRQD-EAERGITIKSTGISLYYEMTDA-A-LKSYRGERQG 87 (824)
Q Consensus 17 ~G~~~~GKTTL~~~ll~~~---g~i~~~~~g~~-~--~~D~~~~-E~~rgiTi~~~~~~~~~~~~~~-~-~~~~~~~~~~ 87 (824)
+|--|+||||.+-.|.++- |.-.-...+++ | ..|.... ..+-++.+..+ |...++ . +..=..+...
T Consensus 107 VGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygs-----yte~dpv~ia~egv~~fKk 181 (483)
T KOG0780|consen 107 VGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGS-----YTEADPVKIASEGVDRFKK 181 (483)
T ss_pred EeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEec-----ccccchHHHHHHHHHHHHh
Confidence 9999999999999997543 22111112221 1 2222221 11222322221 111111 0 1111123445
Q ss_pred CceeEEEEcCCCccc----hHHHHHHHHH--hcCEEEEEEeCCCCcchhHHHHHHHHHhCCCce-EEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVD----FSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~d----f~~e~~~~l~--~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~-ilviNKiD~~ 155 (824)
.++.+.|+||.|... +..|+..... .-|-+|+|+||.-|-... -...+.+..+-+ -+.++|+|-.
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae---~Qa~aFk~~vdvg~vIlTKlDGh 253 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAE---AQARAFKETVDVGAVILTKLDGH 253 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHH---HHHHHHHHhhccceEEEEecccC
Confidence 678999999999543 3445444443 258999999998774321 111222233333 3789999964
No 449
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=95.11 E-value=0.09 Score=54.17 Aligned_cols=67 Identities=10% Similarity=0.083 Sum_probs=46.2
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH---H---HhCCCceEEEEeCCCc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ---A---LGERIRPVLTVNKMDR 154 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~---~---~~~~~p~ilviNKiD~ 154 (824)
+..++.+.||||+|-.. ..+..++..+|.+|+.+-++.-...++...++. . ....+|.-++.|++.-
T Consensus 80 ~~~~~d~VlvDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~ 152 (231)
T PF07015_consen 80 EASGFDFVLVDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPA 152 (231)
T ss_pred HhcCCCEEEEeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCc
Confidence 33467899999999765 335667778999999887775543333333322 2 3456798899999974
No 450
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=95.00 E-value=0.23 Score=52.45 Aligned_cols=82 Identities=21% Similarity=0.250 Sum_probs=46.8
Q ss_pred ceeEEEEcCCCccchHH--------HHHHHHHhcCEEEEEEeCCCCcc---------hhHHHHHHHHHhCCCceEEEEeC
Q 003378 89 EYLINLIDSPGHVDFSS--------EVTAALRITDGALVVVDCIEGVC---------VQTETVLRQALGERIRPVLTVNK 151 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~--------e~~~~l~~~D~avlvvd~~~gv~---------~~t~~~l~~~~~~~~p~ilviNK 151 (824)
.+...+|.|-|..+=.. +-..+---.||+|-||||..... .-.+.+.+.+.+ =-+.+||
T Consensus 145 kfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA~A----D~II~NK 220 (391)
T KOG2743|consen 145 KFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIALA----DRIIMNK 220 (391)
T ss_pred CcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHhhh----heeeecc
Confidence 35667899999876211 11111124699999999975311 111111122221 1368999
Q ss_pred CCcchhcccCCHHHHHHHHHHHHHHhhhhh
Q 003378 152 MDRCFLELQVDGEEAYQTFQKVIENANVIM 181 (824)
Q Consensus 152 iD~~~~~~~~~~~~~~~~~~~~~~~~~~~l 181 (824)
.|+. . ++...++++.+..+|.+-
T Consensus 221 tDli----~---~e~~~~l~q~I~~INslA 243 (391)
T KOG2743|consen 221 TDLV----S---EEEVKKLRQRIRSINSLA 243 (391)
T ss_pred cccc----C---HHHHHHHHHHHHHhhhHH
Confidence 9998 3 345566666667777654
No 451
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=94.95 E-value=0.057 Score=69.46 Aligned_cols=44 Identities=23% Similarity=0.344 Sum_probs=28.8
Q ss_pred HhcCEEEEEEeCCCCcchhHH------HHH-------HHHHhCCCceEEEEeCCCcc
Q 003378 112 RITDGALVVVDCIEGVCVQTE------TVL-------RQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 112 ~~~D~avlvvd~~~gv~~~t~------~~l-------~~~~~~~~p~ilviNKiD~~ 155 (824)
+-.||+|++||..+=...... ..+ ......++|+-++++|||++
T Consensus 200 ~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 200 QPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred CCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence 458999999998754321111 111 12234578999999999986
No 452
>PRK13695 putative NTPase; Provisional
Probab=94.92 E-value=0.16 Score=50.40 Aligned_cols=39 Identities=13% Similarity=0.165 Sum_probs=30.6
Q ss_pred HhcCEEEEEEe---CCCCcchhHHHHHHHHHhCCCceEEEEeCC
Q 003378 112 RITDGALVVVD---CIEGVCVQTETVLRQALGERIRPVLTVNKM 152 (824)
Q Consensus 112 ~~~D~avlvvd---~~~gv~~~t~~~l~~~~~~~~p~ilviNKi 152 (824)
+.+|. +++| +.+....+....+..+.+.+.|+|+++||-
T Consensus 95 ~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~ 136 (174)
T PRK13695 95 EEADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRR 136 (174)
T ss_pred CCCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECch
Confidence 34454 7899 667777777888888888899999999983
No 453
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=94.90 E-value=0.035 Score=58.90 Aligned_cols=64 Identities=25% Similarity=0.273 Sum_probs=42.1
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccc-cCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE-VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~-~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.+|-+ +|-+|+|||||++++........+. ..| .+-|+|+..+......+
T Consensus 142 ~~~~vmV---vGvPNVGKSsLINa~r~~~Lrk~k~a~vG-----------~~pGVT~~V~~~iri~~------------- 194 (335)
T KOG2485|consen 142 SEYNVMV---VGVPNVGKSSLINALRNVHLRKKKAARVG-----------AEPGVTRRVSERIRISH------------- 194 (335)
T ss_pred CceeEEE---EcCCCCChHHHHHHHHHHHhhhccceecc-----------CCCCceeeehhheEecc-------------
Confidence 4567778 9999999999999995433222211 122 13578887776433222
Q ss_pred CCCceeEEEEcCCCc
Q 003378 86 QGNEYLINLIDSPGH 100 (824)
Q Consensus 86 ~~~~~~i~liDTPGh 100 (824)
.-.+++|||||.
T Consensus 195 ---rp~vy~iDTPGi 206 (335)
T KOG2485|consen 195 ---RPPVYLIDTPGI 206 (335)
T ss_pred ---CCceEEecCCCc
Confidence 456999999994
No 454
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.90 E-value=0.16 Score=44.16 Aligned_cols=44 Identities=18% Similarity=0.111 Sum_probs=31.1
Q ss_pred eEEEEcCCCccchHHH-HHHHHHhcCEEEEEEeCCCCcchhHHHH
Q 003378 91 LINLIDSPGHVDFSSE-VTAALRITDGALVVVDCIEGVCVQTETV 134 (824)
Q Consensus 91 ~i~liDTPGh~df~~e-~~~~l~~~D~avlvvd~~~gv~~~t~~~ 134 (824)
.+.++|+||-.+.... ....+..+|.+++++++...-.......
T Consensus 35 d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~ 79 (99)
T cd01983 35 DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEALAVLGARRL 79 (99)
T ss_pred CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchhhHHHHHHH
Confidence 4678999998763321 2577789999999999886655444444
No 455
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=94.88 E-value=0.018 Score=62.30 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=22.7
Q ss_pred CceeeEEEeecCccCCCCCHHHHHHHHH
Q 003378 5 CFTTISVCLGPDANSTFAGKSTLTDSLV 32 (824)
Q Consensus 5 ~~~~i~v~i~~~~G~~~~GKTTL~~~ll 32 (824)
+...|.|+. +|-+++|||++++.|-
T Consensus 304 dkkqISVGf---iGYPNvGKSSiINTLR 328 (572)
T KOG2423|consen 304 DKKQISVGF---IGYPNVGKSSIINTLR 328 (572)
T ss_pred Cccceeeee---ecCCCCchHHHHHHHh
Confidence 467899999 9999999999999993
No 456
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=94.76 E-value=0.09 Score=56.90 Aligned_cols=65 Identities=22% Similarity=0.241 Sum_probs=41.5
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHh----CCCceE-EEEeCCCc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG----ERIRPV-LTVNKMDR 154 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~----~~~p~i-lviNKiD~ 154 (824)
+|.+.+|||||.... .....++..||.+|+++++..--......+++.+.. .+++.. +++|+.|.
T Consensus 115 ~yD~IiIDt~~~l~~-~a~~aal~~AD~viIp~~p~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~ 184 (290)
T CHL00072 115 EYDIILFDVLGDVVC-GGFAAPLNYADYCIIITDNGFDALFAANRIAASVREKARTHPLRLAGLVGNRTSK 184 (290)
T ss_pred cCCEEEEecCCccee-chhhhhhhcCCEEEEEecCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCc
Confidence 588999999987431 223456888999999998865333333344433322 234444 88999873
No 457
>KOG2484 consensus GTPase [General function prediction only]
Probab=94.53 E-value=0.039 Score=60.26 Aligned_cols=59 Identities=34% Similarity=0.442 Sum_probs=41.3
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.|.|+| +|-+++||||++++|......- .|.+ -|+|-....+.+
T Consensus 250 k~sIrvGV---iG~PNVGKSSvINsL~~~k~C~----vg~~-----------pGvT~smqeV~L---------------- 295 (435)
T KOG2484|consen 250 KTSIRVGI---IGYPNVGKSSVINSLKRRKACN----VGNV-----------PGVTRSMQEVKL---------------- 295 (435)
T ss_pred CcceEeee---ecCCCCChhHHHHHHHHhcccc----CCCC-----------ccchhhhhheec----------------
Confidence 67789999 9999999999999996554422 2311 234544444433
Q ss_pred CCCceeEEEEcCCCcc
Q 003378 86 QGNEYLINLIDSPGHV 101 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~ 101 (824)
+..|-|+|+||.+
T Consensus 296 ---dk~i~llDsPgiv 308 (435)
T KOG2484|consen 296 ---DKKIRLLDSPGIV 308 (435)
T ss_pred ---cCCceeccCCcee
Confidence 5679999999963
No 458
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=94.50 E-value=0.0026 Score=62.00 Aligned_cols=115 Identities=18% Similarity=0.182 Sum_probs=78.9
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
.++-| +|..++|||+++.+.+.++-..+-+ . .|.++.+.--+.|+. ..
T Consensus 26 ~k~lV---ig~~~vgkts~i~ryv~~nfs~~yR--A--------------tIgvdfalkVl~wdd-------------~t 73 (229)
T KOG4423|consen 26 FKVLV---IGDLGVGKTSSIKRYVHQNFSYHYR--A--------------TIGVDFALKVLQWDD-------------KT 73 (229)
T ss_pred hhhhe---eeeccccchhHHHHHHHHHHHHHHH--H--------------HHhHHHHHHHhccCh-------------HH
Confidence 35666 8999999999999987655422221 0 011111222234541 11
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHh--------CCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG--------ERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~--------~~~p~ilviNKiD~~ 155 (824)
-.+..|||..|+..|...+....+.+.++.+|+|.+.........-|.+-+. ..+|+++..||+|..
T Consensus 74 ~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e 148 (229)
T KOG4423|consen 74 IVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQE 148 (229)
T ss_pred HHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccC
Confidence 3467899999999998888888899999999999987666555556655432 245678999999987
No 459
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=94.49 E-value=0.1 Score=41.39 Aligned_cols=48 Identities=19% Similarity=0.357 Sum_probs=26.4
Q ss_pred HHHHHHH-hcCEEEEEEeCCCC--cchhHH-HHHHHHHh-C-CCceEEEEeCCC
Q 003378 106 EVTAALR-ITDGALVVVDCIEG--VCVQTE-TVLRQALG-E-RIRPVLTVNKMD 153 (824)
Q Consensus 106 e~~~~l~-~~D~avlvvd~~~g--v~~~t~-~~l~~~~~-~-~~p~ilviNKiD 153 (824)
.+..|++ ..+.+++++|.++. -..... .+++.+.. . +.|.++|+||+|
T Consensus 5 qai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 5 QAITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp HHHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred HHHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 4566775 55788899999864 332222 23344433 3 789999999998
No 460
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=94.42 E-value=0.15 Score=52.39 Aligned_cols=66 Identities=14% Similarity=0.041 Sum_probs=40.0
Q ss_pred CceeEEEEcCCCccchHHHHHHH--HHhcCEEEEEEeCCCCcchhHHHHHHHHHhC----CCceE-EEEeCCCc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAA--LRITDGALVVVDCIEGVCVQTETVLRQALGE----RIRPV-LTVNKMDR 154 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~--l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~----~~p~i-lviNKiD~ 154 (824)
..|.+.||||||......- ... ++.||.+++|+++..--......+++.+... +++.. +++||+|.
T Consensus 115 ~~yD~ilID~~g~~~~~~~-~~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~ 187 (212)
T cd02117 115 DDLDVVLYDVLGDVVCGGF-AMPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNT 187 (212)
T ss_pred cCCCEEEEecCCCceeccc-ccccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCC
Confidence 4689999999986532111 112 3489999999987542222233344444332 44444 89999985
No 461
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=94.14 E-value=0.11 Score=57.91 Aligned_cols=54 Identities=19% Similarity=0.036 Sum_probs=40.1
Q ss_pred ccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 100 HVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 100 h~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
..+|...+....+.+|.+++|+|+.+-.......+.+.+ .+.|+++|+||+|+.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl 103 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLL 103 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhC
Confidence 457877666666888999999999876554444444433 367999999999986
No 462
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=94.11 E-value=0.29 Score=43.46 Aligned_cols=67 Identities=21% Similarity=0.222 Sum_probs=50.0
Q ss_pred EEEEeeecCCCCcceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccc
Q 003378 371 YVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLD 450 (824)
Q Consensus 371 ~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~ 450 (824)
+|.-...+...|. ++.+-|.+|+|+.||.+.. |..+ -||+.|+-..| .++++|.+|+.+-|.|++
T Consensus 4 ~VlE~~~~~g~G~-vatviV~~GtL~~Gd~iv~-G~~~----------gkVr~l~d~~g---~~v~~a~Ps~~V~I~G~~ 68 (95)
T cd03702 4 VVIESKLDKGRGP-VATVLVQNGTLKVGDVLVA-GTTY----------GKVRAMFDENG---KRVKEAGPSTPVEILGLK 68 (95)
T ss_pred EEEEEEecCCCCc-cEEEEEEcCeEeCCCEEEE-cccc----------cEEEEEECCCC---CCCCEECCCCcEEEcCCC
Confidence 3444444556676 8999999999999999874 2211 36777766555 669999999999999988
Q ss_pred cc
Q 003378 451 QY 452 (824)
Q Consensus 451 ~~ 452 (824)
+.
T Consensus 69 ~~ 70 (95)
T cd03702 69 GV 70 (95)
T ss_pred CC
Confidence 75
No 463
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=94.01 E-value=0.048 Score=61.40 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.2
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHH
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
.+.|++ ||-+|+||||++|+|...
T Consensus 314 ~vtVG~---VGYPNVGKSSTINaLvG~ 337 (562)
T KOG1424|consen 314 VVTVGF---VGYPNVGKSSTINALVGR 337 (562)
T ss_pred eeEEEe---ecCCCCchhHHHHHHhcC
Confidence 588888 999999999999999543
No 464
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=93.96 E-value=0.17 Score=53.94 Aligned_cols=38 Identities=11% Similarity=0.015 Sum_probs=25.6
Q ss_pred CceeEEEEcCCCccchHHH-HHHHHHhcCEEEEEEeCCC
Q 003378 88 NEYLINLIDSPGHVDFSSE-VTAALRITDGALVVVDCIE 125 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e-~~~~l~~~D~avlvvd~~~ 125 (824)
..|.+.||||||+.....- ...++..+|.+|+++.+..
T Consensus 115 ~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~ 153 (270)
T cd02040 115 DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEM 153 (270)
T ss_pred cCCCEEEEecccCcccCCcccccccccccEEEEEecCch
Confidence 4689999999987531111 1123347999999998864
No 465
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=93.80 E-value=0.18 Score=53.07 Aligned_cols=66 Identities=20% Similarity=0.188 Sum_probs=50.3
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceE-EEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~i-lviNKiD~~ 155 (824)
+++.+.+||||+..+ ..+..++..+|.+|+|+++...-...+...++.+...+++.+ +++|+.|..
T Consensus 107 ~~yD~VIiD~p~~~~--~~~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 107 DDTDFLLIDAPAGLE--RDAVTALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTRD 173 (251)
T ss_pred hhCCEEEEeCCCccC--HHHHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCch
Confidence 468899999999765 467778899999999999875444445555566666677755 899999864
No 466
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.74 E-value=0.16 Score=51.83 Aligned_cols=65 Identities=15% Similarity=0.223 Sum_probs=46.0
Q ss_pred eEEEEcCCCccchHHH---HHHHHHhcCEEEEEEeCCCCcc-hhHHHHHHHHHhCCC----ceEEEEeCCCcc
Q 003378 91 LINLIDSPGHVDFSSE---VTAALRITDGALVVVDCIEGVC-VQTETVLRQALGERI----RPVLTVNKMDRC 155 (824)
Q Consensus 91 ~i~liDTPGh~df~~e---~~~~l~~~D~avlvvd~~~gv~-~~t~~~l~~~~~~~~----p~ilviNKiD~~ 155 (824)
.+.+||-||+.+|..- -+.-.+.+.+.|+|+|+.+... +-++.+.-.++..++ .+=++|-|.|-+
T Consensus 76 nf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGL 148 (347)
T KOG3887|consen 76 NFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGL 148 (347)
T ss_pred ceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCC
Confidence 5678999999987543 4556688889999999987643 344444444555544 334899999976
No 467
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=93.66 E-value=0.1 Score=55.01 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=35.7
Q ss_pred HHHHhcCEEEEEEeCCCCc-chh-HHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 109 AALRITDGALVVVDCIEGV-CVQ-TETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 109 ~~l~~~D~avlvvd~~~gv-~~~-t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
..++.+|++++|+|+.+.. ... ..+.+..+...++|+++|+||+|+.
T Consensus 32 ~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~ 80 (245)
T TIGR00157 32 PIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLL 80 (245)
T ss_pred cccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccC
Confidence 4688999999999998643 332 2334455666899999999999986
No 468
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.63 E-value=0.49 Score=46.92 Aligned_cols=139 Identities=19% Similarity=0.240 Sum_probs=76.0
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCC-cccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGI-IAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~-i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
.|.| +|.+++||||+++.|....+. +.. .. ......+|-+..|.. +....
T Consensus 3 ~ili---~G~~~sGKS~~a~~l~~~~~~~~~~--ia---t~~~~~~e~~~ri~~---------------------h~~~R 53 (170)
T PRK05800 3 LILV---TGGARSGKSRFAERLAAQSGLQVLY--IA---TAQPFDDEMAARIAH---------------------HRQRR 53 (170)
T ss_pred EEEE---ECCCCccHHHHHHHHHHHcCCCcEe--Cc---CCCCChHHHHHHHHH---------------------HHhcC
Confidence 3566 899999999999999876441 111 11 011112222212111 01112
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcch-----h-----HH---HHHHHHHhCCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-----Q-----TE---TVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~-----~-----t~---~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+..|..+.+|.+.. +..... ...+-+++||+..+... + .. .++..+.+.+.+.|++-|=...-
T Consensus 54 ~~~w~t~E~~~~l~---~~i~~~-~~~~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~~~~tvVlVs~Evg~g 129 (170)
T PRK05800 54 PAHWQTVEEPLDLA---ELLRAD-AAPGRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQLPAKIILVTNEVGMG 129 (170)
T ss_pred CCCCeEecccccHH---HHHHhh-cCCCCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHHcCCCCEEEEEcCCccc
Confidence 44567788876422 222211 12244788998765421 1 11 22333455677777777765554
Q ss_pred hhcccCCHHHHHHHHHHHHHHhhhhhhhcc
Q 003378 156 FLELQVDGEEAYQTFQKVIENANVIMATYE 185 (824)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 185 (824)
..+.+..-..+++.+..+|+.+....
T Consensus 130 ----~vp~~~~~r~~~d~lG~lnq~la~~a 155 (170)
T PRK05800 130 ----IVPEYRLGRHFRDIAGRLNQQLAAAA 155 (170)
T ss_pred ----ccCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 33445666789999999999887543
No 469
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=93.61 E-value=0.25 Score=51.79 Aligned_cols=77 Identities=21% Similarity=0.163 Sum_probs=49.8
Q ss_pred hccccccCCCceeEEEEcCCC-ccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 79 KSYRGERQGNEYLINLIDSPG-HVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 79 ~~~~~~~~~~~~~i~liDTPG-h~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+.+....+-....+.+||||. -.|-.-.+...++.+||||+|==+.+--....++-...+.+.++|++=+|-.|=..
T Consensus 146 ~qflk~vdwg~lDyLviDtPPGtsDehls~~~~~~~~~gAviVTTPQ~vAl~Dv~K~i~fc~K~~I~ilGvVENMs~f 223 (300)
T KOG3022|consen 146 KQFLKDVDWGELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVTTPQEVALQDVRKEIDFCRKAGIPILGVVENMSGF 223 (300)
T ss_pred HHHHhcCCCCCcCEEEEeCCCCCChhhhheeecccccCceEEEeCchhhhhHHHHhhhhhhhhcCCceEEEEeccccc
Confidence 334444555566788999985 44444456666777799988764443323334456678999999999666555544
No 470
>PHA02518 ParA-like protein; Provisional
Probab=93.37 E-value=0.32 Score=49.58 Aligned_cols=65 Identities=15% Similarity=0.132 Sum_probs=43.7
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHH-----hCCCceE-EEEeCCCc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL-----GERIRPV-LTVNKMDR 154 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~-----~~~~p~i-lviNKiD~ 154 (824)
..+.+.||||||..+ ..+..++..+|.+|+++.+..--...+..+++.+. ..+.|.+ ++.|+.+.
T Consensus 75 ~~~d~viiD~p~~~~--~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 75 SGYDYVVVDGAPQDS--ELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIK 145 (211)
T ss_pred ccCCEEEEeCCCCcc--HHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCC
Confidence 467899999999754 55788999999999999987543333333333322 2245554 66677654
No 471
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=93.34 E-value=0.64 Score=48.65 Aligned_cols=62 Identities=24% Similarity=0.182 Sum_probs=41.9
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
...+.+.++|||-... ..+..++..+|.+++|+-+...-. . .+-++. ..-..-++||+.|-.
T Consensus 115 ~~~~~~iliD~P~g~~--~~~~~al~~aD~vL~V~~~Da~s~--~-~L~q~~--l~~~~~~liNq~~~~ 176 (243)
T PF06564_consen 115 LGPYDWILIDTPPGPS--PYTRQALAAADLVLVVVNPDAASH--A-RLHQRA--LPAGHRFLINQYDPA 176 (243)
T ss_pred cCCCCEEEEeCCCCCc--HHHHHHHHhCCeEEEEeCCCHHHH--H-HHHHhc--ccCCcEEEEeccCcc
Confidence 3457899999998544 667889999999999987754311 1 111222 222357899999975
No 472
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=93.32 E-value=0.054 Score=55.15 Aligned_cols=71 Identities=24% Similarity=0.282 Sum_probs=43.6
Q ss_pred cCCCceeEEEEcCCCccch------HHHHHHHHHhcCEEEEEEeCCCCc-chhHH-------HHHHHHHhCCCceEEEEe
Q 003378 85 RQGNEYLINLIDSPGHVDF------SSEVTAALRITDGALVVVDCIEGV-CVQTE-------TVLRQALGERIRPVLTVN 150 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df------~~e~~~~l~~~D~avlvvd~~~gv-~~~t~-------~~l~~~~~~~~p~ilviN 150 (824)
.+....++.++||||+++| ...+.+-++..|.-+++|.-.+-. +.... ..+.-......|.|=|+.
T Consensus 92 l~~~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlS 171 (290)
T KOG1533|consen 92 LKPLTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLS 171 (290)
T ss_pred hhhccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhh
Confidence 3334567889999998764 345777777777666555444321 11100 112223456789999999
Q ss_pred CCCcc
Q 003378 151 KMDRC 155 (824)
Q Consensus 151 KiD~~ 155 (824)
|+|+.
T Consensus 172 K~Dl~ 176 (290)
T KOG1533|consen 172 KADLL 176 (290)
T ss_pred HhHHH
Confidence 99986
No 473
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=93.31 E-value=0.67 Score=51.64 Aligned_cols=128 Identities=20% Similarity=0.190 Sum_probs=73.0
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCccccc-CCceeecCChhhHhHhccceeece--------EEEEEeechhhhh
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV-AGDVRMTDTRQDEAERGITIKSTG--------ISLYYEMTDAALK 79 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~-~g~~~~~D~~~~E~~rgiTi~~~~--------~~~~~~~~~~~~~ 79 (824)
|=+++ +|++-.||||++.++....-.-.-.+ ..+-|..|-+|+- .-|-||.++. +.+..
T Consensus 18 IYiGV---VGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS-~aGktImTTEPKFiP~eAv~I~l-------- 85 (492)
T PF09547_consen 18 IYIGV---VGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQS-GAGKTIMTTEPKFIPNEAVEITL-------- 85 (492)
T ss_pred eEEEe---ecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcC-CCCCceeccCCcccCCcceEEEe--------
Confidence 56677 99999999999999954322110000 0001222222211 1133333221 11111
Q ss_pred ccccccCCCceeEEEEcCCCcc-------------------------chHHHHHHHHHh-----c-CEEEEEEeCCCCc-
Q 003378 80 SYRGERQGNEYLINLIDSPGHV-------------------------DFSSEVTAALRI-----T-DGALVVVDCIEGV- 127 (824)
Q Consensus 80 ~~~~~~~~~~~~i~liDTPGh~-------------------------df~~e~~~~l~~-----~-D~avlvvd~~~gv- 127 (824)
.++-..++-+|||-|+. -|...+.-+-+- + =|+|+.-|++-+-
T Consensus 86 -----~~~~~~kVRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~di 160 (492)
T PF09547_consen 86 -----DDGIKVKVRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDI 160 (492)
T ss_pred -----cCCceEEEEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCC
Confidence 13346788899998852 255555555431 1 2666777776442
Q ss_pred -----chhHHHHHHHHHhCCCceEEEEeCCC
Q 003378 128 -----CVQTETVLRQALGERIRPVLTVNKMD 153 (824)
Q Consensus 128 -----~~~t~~~l~~~~~~~~p~ilviNKiD 153 (824)
....+++...+.+.++|.|+++|-.+
T Consensus 161 pRe~Y~eAEervI~ELk~igKPFvillNs~~ 191 (492)
T PF09547_consen 161 PRENYVEAEERVIEELKEIGKPFVILLNSTK 191 (492)
T ss_pred ChHHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 33456778889999999999999877
No 474
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=93.24 E-value=0.26 Score=53.04 Aligned_cols=100 Identities=18% Similarity=0.226 Sum_probs=56.7
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechh-hhhcccccc
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDA-ALKSYRGER 85 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~-~~~~~~~~~ 85 (824)
+.++++| +|.+++||||+.++|-... .. ++. ..+ .||+..........+.- .+.....+.
T Consensus 19 ~~lkiGI---VGlPNvGKST~fnalT~~~--a~---~~N---fPF--------~TIdPn~a~V~v~d~Rfd~l~~~Y~~~ 79 (391)
T KOG1491|consen 19 NNLKIGI---VGLPNVGKSTFFNALTKSK--AG---AAN---FPF--------CTIDPNEARVEVPDSRFDLLCPIYGPK 79 (391)
T ss_pred CcceeeE---eeCCCCchHHHHHHHhcCC--CC---ccC---CCc--------ceeccccceeecCchHHHHHHHhcCCc
Confidence 3458888 9999999999999993211 11 111 111 23333332222110000 111112222
Q ss_pred CCCceeEEEEcCCCccc-------hHHHHHHHHHhcCEEEEEEeCCC
Q 003378 86 QGNEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 125 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~d-------f~~e~~~~l~~~D~avlvvd~~~ 125 (824)
....-.+++.|.+|-+. +...-..-+|.+|+.+=||++.+
T Consensus 80 ~~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 80 SKVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred ceeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 33345799999999654 33345667899999999999864
No 475
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.14 E-value=0.18 Score=63.40 Aligned_cols=66 Identities=20% Similarity=0.238 Sum_probs=40.6
Q ss_pred eeEEEEcCCCc------cchHHHH-----------HHHHHhcCEEEEEEeCCCCcch--hHH-HHH----------HHHH
Q 003378 90 YLINLIDSPGH------VDFSSEV-----------TAALRITDGALVVVDCIEGVCV--QTE-TVL----------RQAL 139 (824)
Q Consensus 90 ~~i~liDTPGh------~df~~e~-----------~~~l~~~D~avlvvd~~~gv~~--~t~-~~l----------~~~~ 139 (824)
..-.+|||.|- .++.... .+..+-.||+|+.+|..+=.+. +.. .+. +...
T Consensus 174 deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL 253 (1188)
T COG3523 174 DEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETL 253 (1188)
T ss_pred cceEEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 35568999993 2222221 1233568999999998763222 222 111 2234
Q ss_pred hCCCceEEEEeCCCcc
Q 003378 140 GERIRPVLTVNKMDRC 155 (824)
Q Consensus 140 ~~~~p~ilviNKiD~~ 155 (824)
...+|+-+++||+|+.
T Consensus 254 ~~~~PVYl~lTk~Dll 269 (1188)
T COG3523 254 HARLPVYLVLTKADLL 269 (1188)
T ss_pred ccCCceEEEEeccccc
Confidence 5688999999999985
No 476
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.03 E-value=1.2 Score=43.29 Aligned_cols=49 Identities=16% Similarity=0.227 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCcchhH---HHHHHHHHhCCCceEEEEeCCCcc
Q 003378 105 SEVTAALRITDGALVVVDCIEGVCVQT---ETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 105 ~e~~~~l~~~D~avlvvd~~~gv~~~t---~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
....+|++.||.+ +||=.--+...+ ...++.+...+.|.|.++-+-++.
T Consensus 92 ~al~rA~~~aDvI--IIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~ 143 (179)
T COG1618 92 PALRRALEEADVI--IIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRH 143 (179)
T ss_pred HHHHHHhhcCCEE--EEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCC
Confidence 3455677777864 467553333333 345667778899988888766653
No 477
>PRK01889 GTPase RsgA; Reviewed
Probab=92.92 E-value=0.13 Score=57.45 Aligned_cols=24 Identities=38% Similarity=0.445 Sum_probs=20.2
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
.+++ +|.+|+|||||++.|+....
T Consensus 197 ~~~l---vG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 197 TVAL---LGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred EEEE---ECCCCccHHHHHHHHHHhcc
Confidence 5677 99999999999999975443
No 478
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=92.89 E-value=0.25 Score=51.72 Aligned_cols=64 Identities=19% Similarity=0.092 Sum_probs=54.7
Q ss_pred eeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 90 ~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
..+.+||||.-.- -.+..++..+|.||+|--++.--....+++++.+...++|..+|+||-+.-
T Consensus 164 ~~~~IIDsaaG~g--CpVi~sl~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~g 227 (284)
T COG1149 164 ADLLIIDSAAGTG--CPVIASLKGADLAILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNLG 227 (284)
T ss_pred cceeEEecCCCCC--ChHHHhhccCCEEEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCCC
Confidence 4788999997544 578999999999999999886556677888999999999999999999554
No 479
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=92.85 E-value=0.15 Score=47.12 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=17.6
Q ss_pred EEeecCccCCCCCHHHHHHHHHHH
Q 003378 11 VCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
|++ .|..|+||||++..|...
T Consensus 2 i~~---~GkgG~GKTt~a~~la~~ 22 (116)
T cd02034 2 IAI---TGKGGVGKTTIAALLARY 22 (116)
T ss_pred EEE---ECCCCCCHHHHHHHHHHH
Confidence 566 899999999999888543
No 480
>PRK12289 GTPase RsgA; Reviewed
Probab=92.80 E-value=0.17 Score=56.16 Aligned_cols=47 Identities=26% Similarity=0.189 Sum_probs=36.5
Q ss_pred HHHHhcCEEEEEEeCCCCc-ch-hHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 109 AALRITDGALVVVDCIEGV-CV-QTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 109 ~~l~~~D~avlvvd~~~gv-~~-~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
.+++.+|.+++|+|+.+.. .. ...+.+..+...++|+|+|+||+|+.
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv 133 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLV 133 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcC
Confidence 3578999999999987542 33 33455566677899999999999986
No 481
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=92.75 E-value=0.24 Score=52.34 Aligned_cols=65 Identities=23% Similarity=0.276 Sum_probs=51.0
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCC-ceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI-RPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~-p~ilviNKiD~~ 155 (824)
.+.+.|||||+..+ ..+..++..+|.+|+|+.+...-...+..+++.+...+. +..+++|+++..
T Consensus 111 ~~D~viiD~p~~~~--~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~iviN~~~~~ 176 (261)
T TIGR01968 111 EFDYVIIDCPAGIE--SGFRNAVAPADEAIVVTTPEVSAVRDADRVIGLLEAKGIEKIHLIVNRLRPE 176 (261)
T ss_pred hCCEEEEeCCCCcC--HHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHHHcCCCceEEEEeCcCch
Confidence 57899999999765 356678899999999999886666677777777776665 456899999853
No 482
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=92.50 E-value=0.32 Score=53.39 Aligned_cols=82 Identities=12% Similarity=0.066 Sum_probs=58.6
Q ss_pred hccceeeceEEEEEeechhhhhccccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCc----------
Q 003378 58 RGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV---------- 127 (824)
Q Consensus 58 rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv---------- 127 (824)
|--|.....+.|.++ +..+-++|.+|+.-=..-.......++++|+|++-++=.
T Consensus 179 R~~T~GI~e~~F~~k----------------~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~N 242 (354)
T KOG0082|consen 179 RVPTTGIVEVEFTIK----------------GLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTN 242 (354)
T ss_pred ccCcCCeeEEEEEeC----------------CCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchh
Confidence 555666666666665 788999999999766666777788899999999887532
Q ss_pred -chhHHHHHHHHHh----CCCceEEEEeCCCcc
Q 003378 128 -CVQTETVLRQALG----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 128 -~~~t~~~l~~~~~----~~~p~ilviNKiD~~ 155 (824)
...+..++..+.. .+.++|||+||+|+.
T Consensus 243 RM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLF 275 (354)
T KOG0082|consen 243 RMHESLKLFESICNNKWFANTSIILFLNKKDLF 275 (354)
T ss_pred HHHHHHHHHHHHhcCcccccCcEEEEeecHHHH
Confidence 1223334433322 367899999999986
No 483
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=92.49 E-value=0.39 Score=51.44 Aligned_cols=66 Identities=9% Similarity=-0.010 Sum_probs=38.5
Q ss_pred CceeEEEEcCCCccchH-HHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHH---hCCCceE-EEEeCCC
Q 003378 88 NEYLINLIDSPGHVDFS-SEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL---GERIRPV-LTVNKMD 153 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~-~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~---~~~~p~i-lviNKiD 153 (824)
.+|.+.||||||..-.. --...++..||.+|+|+.+..--......+++.+. ..+++.. +++|+.+
T Consensus 115 ~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~ 185 (273)
T PRK13232 115 DDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAANNICKGLAKFAKGGARLGGIICNSRN 185 (273)
T ss_pred ccCCEEEEecCCCeeECCEeccccccccceEEEecCchHHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCC
Confidence 35889999999864211 01122345899999999875432222223333333 3455554 7888754
No 484
>PRK01889 GTPase RsgA; Reviewed
Probab=92.35 E-value=0.28 Score=54.66 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=38.6
Q ss_pred HHhcCEEEEEEeCCCCcch-hHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 111 LRITDGALVVVDCIEGVCV-QTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 111 l~~~D~avlvvd~~~gv~~-~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+..+|.+++|+++...... ...+.+..+...+++++||+||+|+.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~ 155 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLC 155 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 4678999999999877766 55677888899999999999999997
No 485
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=92.12 E-value=0.2 Score=53.64 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=17.9
Q ss_pred EEeecCccCCCCCHHHHHHHHHH
Q 003378 11 VCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
|++ +|..|+|||||+.+|+.
T Consensus 4 i~i---~G~~gSGKTTLi~~Li~ 23 (274)
T PRK14493 4 LSI---VGYKATGKTTLVERLVD 23 (274)
T ss_pred EEE---ECCCCCCHHHHHHHHHH
Confidence 667 99999999999999964
No 486
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=92.01 E-value=0.15 Score=41.39 Aligned_cols=17 Identities=35% Similarity=0.446 Sum_probs=15.6
Q ss_pred ccCCCCCHHHHHHHHHH
Q 003378 17 ANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 17 ~G~~~~GKTTL~~~ll~ 33 (824)
.|+.|+|||||++++.+
T Consensus 29 ~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 29 TGPNGSGKSTLLDAIQT 45 (62)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 89999999999999943
No 487
>CHL00175 minD septum-site determining protein; Validated
Probab=91.94 E-value=0.35 Score=52.04 Aligned_cols=65 Identities=23% Similarity=0.180 Sum_probs=50.2
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCc-eEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p-~ilviNKiD~~ 155 (824)
.|.+.|||||+... ..+..++..+|.+++|+++...-...+..+++.+.+.+.+ +-+++|+++..
T Consensus 126 ~yD~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~~~si~~~~~~~~~l~~~~~~~~~lvvN~~~~~ 191 (281)
T CHL00175 126 GYDYILIDCPAGID--VGFINAIAPAQEAIVVTTPEITAIRDADRVAGLLEANGIYNVKLLVNRVRPD 191 (281)
T ss_pred CCCEEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCChHHHHHHHHHHHHHHHcCCCceEEEEeccChh
Confidence 68899999999765 4667788899999999998765555666677777666664 44899999854
No 488
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=91.76 E-value=0.46 Score=50.93 Aligned_cols=63 Identities=11% Similarity=0.023 Sum_probs=35.8
Q ss_pred ceeEEEEcCCCccchHHH-HHHHHHhcCEEEEEEeCCCCcchhHHHHHH---HH-HhCCCceE-EEEeC
Q 003378 89 EYLINLIDSPGHVDFSSE-VTAALRITDGALVVVDCIEGVCVQTETVLR---QA-LGERIRPV-LTVNK 151 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e-~~~~l~~~D~avlvvd~~~gv~~~t~~~l~---~~-~~~~~p~i-lviNK 151 (824)
.|.+.||||||..-...- ...++..||.+|+++.+..--......+++ .+ ...+++.. ++.|+
T Consensus 115 ~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~giv~n~ 183 (275)
T TIGR01287 115 DLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYAANNICKGILKYAKSGGVRLGGLICNS 183 (275)
T ss_pred cCCEEEEeccCcceecceeeccccccccEEEEEecchHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEcC
Confidence 589999999986521110 112345789999999887533333333332 22 23455554 44554
No 489
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=91.59 E-value=0.99 Score=40.10 Aligned_cols=71 Identities=18% Similarity=0.174 Sum_probs=50.2
Q ss_pred EEEEeeecCCCCcceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccc
Q 003378 371 YVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLD 450 (824)
Q Consensus 371 ~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~ 450 (824)
+|.-...+...|. ++.+=|.+|+|+.||.+.. +..+ -||..++--. -..+++|.+|+.+-+.|++
T Consensus 4 ~ViE~~~~~g~G~-vatviV~~GtL~~Gd~iv~-G~~~----------GkVr~~~d~~---g~~v~~a~Ps~~v~i~g~~ 68 (95)
T cd03701 4 TVIESKLDKGRGP-VATVIVQNGTLKKGDVIVA-GGTY----------GKIRTMVDEN---GKALLEAGPSTPVEILGLK 68 (95)
T ss_pred EEEEEEecCCCCe-eEEEEEEcCeEecCCEEEE-CCcc----------ceEEEEECCC---CCCccccCCCCCEEEeeec
Confidence 3444444566676 8999999999999999874 2111 3666665444 4569999999999999988
Q ss_pred cccccce
Q 003378 451 QYITKNA 457 (824)
Q Consensus 451 ~~~~~tg 457 (824)
... ..|
T Consensus 69 ~~p-~aG 74 (95)
T cd03701 69 DVP-KAG 74 (95)
T ss_pred CCc-cCC
Confidence 763 344
No 490
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=91.45 E-value=0.19 Score=54.30 Aligned_cols=45 Identities=24% Similarity=0.230 Sum_probs=35.3
Q ss_pred HHhcCEEEEEEeCCCCc-chh-HHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 111 LRITDGALVVVDCIEGV-CVQ-TETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 111 l~~~D~avlvvd~~~gv-~~~-t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+..+|.+++|+|+.+.. ... ..+.+..+...++|+++|+||+|+.
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~ 122 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLL 122 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCC
Confidence 57889999999998775 332 2344555677899999999999986
No 491
>PRK00098 GTPase RsgA; Reviewed
Probab=91.15 E-value=0.25 Score=53.70 Aligned_cols=46 Identities=24% Similarity=0.261 Sum_probs=34.5
Q ss_pred HHHhcCEEEEEEeCCCCcch--hHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 110 ALRITDGALVVVDCIEGVCV--QTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 110 ~l~~~D~avlvvd~~~gv~~--~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
.++.+|.+++|+|+.+.... ...+.+..+...++|+++|+||+|+.
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~ 124 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLL 124 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcC
Confidence 46889999999999753221 12344555677899999999999985
No 492
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=91.01 E-value=0.36 Score=51.93 Aligned_cols=39 Identities=15% Similarity=0.138 Sum_probs=26.6
Q ss_pred CceeEEEEcCCCccchHH-HHHHHHHhcCEEEEEEeCCCC
Q 003378 88 NEYLINLIDSPGHVDFSS-EVTAALRITDGALVVVDCIEG 126 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~-e~~~~l~~~D~avlvvd~~~g 126 (824)
.+|.+.||||||..-... .+..++..||.+|+++.+..-
T Consensus 115 ~~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~~~ 154 (279)
T PRK13230 115 LGPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDPM 154 (279)
T ss_pred cCCCEEEEecCCccccCCccccccccccceEEEeccchHH
Confidence 368999999998532111 122345679999999998753
No 493
>PRK13796 GTPase YqeH; Provisional
Probab=90.99 E-value=0.64 Score=52.05 Aligned_cols=51 Identities=22% Similarity=0.105 Sum_probs=35.6
Q ss_pred chHHHHHHHHHhcC-EEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 102 DFSSEVTAALRITD-GALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 102 df~~e~~~~l~~~D-~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
||. .+...+...| .+++|||+.+-.......+-+.. .+.|+++|+||+|+.
T Consensus 58 ~~~-~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~--~~kpviLViNK~DLl 109 (365)
T PRK13796 58 DFL-KLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV--GNNPVLLVGNKADLL 109 (365)
T ss_pred HHH-HHHHhhcccCcEEEEEEECccCCCchhHHHHHHh--CCCCEEEEEEchhhC
Confidence 554 4677777777 88999999885544433332222 367999999999996
No 494
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=90.84 E-value=0.6 Score=49.99 Aligned_cols=63 Identities=21% Similarity=0.308 Sum_probs=50.7
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceE-EEEeC
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNK 151 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~i-lviNK 151 (824)
..|.+.|||||.-.. ..++...+..+|++|+|+.+..--........+.+.+.+.+++ +|+|+
T Consensus 211 ~~yD~ViiD~pp~~~-~~d~~~~~~~~d~vilV~~~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 211 GDYDVVIVDTPSAEH-SSDAQIVATRARGTLIVSRVNETRLHELTSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred hcCCEEEEeCCCccc-ccHHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 458899999998543 3456667789999999999887666777788888888899988 88885
No 495
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=90.68 E-value=0.79 Score=50.38 Aligned_cols=66 Identities=18% Similarity=0.085 Sum_probs=47.9
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+.|.+.+||||+..+ ..+..++..+|.+|+|+++.---...+.++++.+...+...-+++|.....
T Consensus 203 ~~~D~VIID~p~~~~--~~~~~~L~~AD~vliV~~~~~~sl~~a~r~l~~l~~~~~~~~lVv~~~~~~ 268 (322)
T TIGR03815 203 RGGDLVVVDLPRRLT--PAAETALESADLVLVVVPADVRAVAAAARVCPELGRRNPDLRLVVRGPAPA 268 (322)
T ss_pred hcCCEEEEeCCCCCC--HHHHHHHHHCCEEEEEcCCcHHHHHHHHHHHHHHhhhCCCeEEEEeCCCCC
Confidence 457899999999876 457888999999999998765444455666666665554455677875544
No 496
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=90.51 E-value=0.74 Score=46.08 Aligned_cols=64 Identities=19% Similarity=0.171 Sum_probs=49.1
Q ss_pred eeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCc--e-EEEEeCCCcc
Q 003378 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR--P-VLTVNKMDRC 155 (824)
Q Consensus 90 ~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p--~-ilviNKiD~~ 155 (824)
+.+.|||||+..... +..++..+|.+|+++++..--...+..+...+...+.+ . -+++||.+.-
T Consensus 95 yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~ 161 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVDPG 161 (195)
T ss_dssp SSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSC
T ss_pred ccceeecccccccHH--HHHHHHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeCCC
Confidence 899999999987744 78899999999999998764445555666666666632 3 4899999864
No 497
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=90.41 E-value=1.3 Score=45.59 Aligned_cols=67 Identities=15% Similarity=-0.033 Sum_probs=50.9
Q ss_pred ceeEEEEcCCCccchHHH-HHHHHHh--cCEEEEEEeCCCCcchhHHHHHHHHHhCCCceE-EEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSE-VTAALRI--TDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e-~~~~l~~--~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~i-lviNKiD~~ 155 (824)
.|.+.+||||........ +...+.. +|.+++|+.+......++...++.+...+.+.. +|+|+....
T Consensus 113 ~yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~~~~ 183 (217)
T cd02035 113 LYDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRVLPA 183 (217)
T ss_pred CCCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCc
Confidence 489999999975333222 2333333 489999999998888889999999999998865 899998865
No 498
>PRK12288 GTPase RsgA; Reviewed
Probab=90.26 E-value=0.84 Score=50.64 Aligned_cols=45 Identities=18% Similarity=0.260 Sum_probs=33.3
Q ss_pred HHhcCEEEEEEeCCCCcchhH-HHHHHHHHhCCCceEEEEeCCCcc
Q 003378 111 LRITDGALVVVDCIEGVCVQT-ETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 111 l~~~D~avlvvd~~~gv~~~t-~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+..+|.+++|.+......... .+.+..+...++|+++|+||+|+.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~ 163 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLL 163 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCC
Confidence 356899999988765554433 234455677889999999999997
No 499
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=89.78 E-value=0.61 Score=42.66 Aligned_cols=19 Identities=16% Similarity=0.076 Sum_probs=17.6
Q ss_pred EEEeecCccCCCCCHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSL 31 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~l 31 (824)
+|++ +|..|+|||+|+.++
T Consensus 2 kvv~---~G~~gvGKt~l~~~~ 20 (124)
T smart00010 2 KVVG---IGDSGVGKVGKSARF 20 (124)
T ss_pred EEEE---ECCCChhHHHHHHHH
Confidence 6788 999999999999998
No 500
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=89.75 E-value=1.6 Score=39.68 Aligned_cols=68 Identities=18% Similarity=0.189 Sum_probs=47.5
Q ss_pred ecCCCCcceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecC-------ceeeecccc--CCCEEEEe
Q 003378 377 PASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGK-------KQETVEDVP--CGNTVAMV 447 (824)
Q Consensus 377 ~~~~~g~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~-------~~~~v~~a~--AGdIvai~ 447 (824)
.++..|. .+-+=||+|+|+.||.|.+.+.+ | ...-||+.|+...+. ++..++++. +|--+.+.
T Consensus 10 ~~~G~G~-t~dvIl~~GtL~~GD~Iv~g~~~---G----pi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~~ 81 (110)
T cd03703 10 EEEGLGT-TIDVILYDGTLREGDTIVVCGLN---G----PIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILAP 81 (110)
T ss_pred EcCCCce-EEEEEEECCeEecCCEEEEccCC---C----CceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEeC
Confidence 3556676 88889999999999999875421 1 112478888777763 345677777 66666667
Q ss_pred ccccc
Q 003378 448 GLDQY 452 (824)
Q Consensus 448 gl~~~ 452 (824)
||+..
T Consensus 82 gL~~v 86 (110)
T cd03703 82 DLEKA 86 (110)
T ss_pred CCccc
Confidence 78776
Done!