Query 003378
Match_columns 824
No_of_seqs 292 out of 2577
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 23:15:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003378.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003378hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n0u_A EF-2, elongation factor 100.0 5E-149 2E-153 1356.5 78.9 813 6-824 17-842 (842)
2 4fn5_A EF-G 1, elongation fact 100.0 3E-118 1E-122 1071.7 50.3 658 6-790 11-700 (709)
3 2rdo_7 EF-G, elongation factor 100.0 4E-110 2E-114 996.4 66.3 659 6-803 8-701 (704)
4 2xex_A Elongation factor G; GT 100.0 1E-107 4E-112 975.3 55.7 650 6-804 8-690 (693)
5 1dar_A EF-G, elongation factor 100.0 9E-108 3E-112 975.6 49.2 645 6-802 10-689 (691)
6 3j25_A Tetracycline resistance 100.0 1E-110 3E-115 993.9 15.7 587 9-794 3-620 (638)
7 2dy1_A Elongation factor G; tr 100.0 3E-100 1E-104 908.2 52.8 627 1-805 1-662 (665)
8 3vqt_A RF-3, peptide chain rel 100.0 1.6E-77 5.4E-82 695.9 31.1 447 6-565 29-502 (548)
9 2ywe_A GTP-binding protein LEP 100.0 2E-70 6.9E-75 637.3 43.0 475 6-805 4-521 (600)
10 3cb4_D GTP-binding protein LEP 100.0 1.6E-68 5.6E-73 622.8 41.1 473 7-805 3-516 (599)
11 2h5e_A Peptide chain release f 100.0 4.6E-62 1.6E-66 563.9 31.9 444 6-563 11-477 (529)
12 3tr5_A RF-3, peptide chain rel 100.0 2.2E-60 7.4E-65 549.3 33.6 438 6-563 11-476 (528)
13 3e3x_A BIPA; MCSG,PSI2, struct 100.0 1.7E-34 5.8E-39 306.9 16.6 193 445-791 2-208 (332)
14 3j2k_7 ERF3, eukaryotic polype 100.0 5.6E-30 1.9E-34 290.6 29.4 287 6-464 15-328 (439)
15 1d2e_A Elongation factor TU (E 100.0 3.1E-30 1.1E-34 289.5 19.7 284 7-463 2-290 (397)
16 2c78_A Elongation factor TU-A; 100.0 2.5E-29 8.7E-34 283.0 25.7 293 6-463 9-308 (405)
17 1g7s_A Translation initiation 100.0 4.4E-30 1.5E-34 299.8 16.9 331 6-503 3-373 (594)
18 1jny_A EF-1-alpha, elongation 100.0 1.4E-29 4.9E-34 287.4 17.5 288 6-463 4-317 (435)
19 3mca_A HBS1, elongation factor 100.0 3.9E-29 1.3E-33 292.8 14.1 288 6-464 175-490 (592)
20 3p26_A Elongation factor 1 alp 100.0 1.8E-27 6.2E-32 273.7 27.4 297 6-463 31-362 (483)
21 3avx_A Elongation factor TS, e 100.0 8.8E-28 3E-32 289.9 21.9 284 6-463 294-581 (1289)
22 1f60_A Elongation factor EEF1A 100.0 2.1E-27 7.3E-32 270.8 22.1 298 6-463 5-328 (458)
23 1r5b_A Eukaryotic peptide chai 100.0 2.6E-27 9.1E-32 270.7 22.4 289 5-463 40-356 (467)
24 1zun_B Sulfate adenylate trans 99.9 6.1E-27 2.1E-31 265.8 23.8 287 6-464 22-327 (434)
25 1kk1_A EIF2gamma; initiation o 99.9 5.5E-26 1.9E-30 256.2 28.1 133 6-155 8-150 (410)
26 3izq_1 HBS1P, elongation facto 99.9 3.6E-27 1.2E-31 276.9 18.1 297 6-463 165-496 (611)
27 2elf_A Protein translation elo 99.9 1.8E-26 6.1E-31 255.6 21.3 101 10-154 23-125 (370)
28 1s0u_A EIF-2-gamma, translatio 99.9 5.7E-25 2E-29 247.6 24.9 133 6-155 6-148 (408)
29 1zo1_I IF2, translation initia 99.9 3.5E-27 1.2E-31 268.8 3.0 300 6-513 2-334 (501)
30 1wb1_A Translation elongation 99.9 1.2E-25 4.2E-30 257.6 12.3 122 6-155 17-138 (482)
31 3sjy_A Translation initiation 99.9 6.8E-24 2.3E-28 238.5 22.3 133 6-155 6-142 (403)
32 3izy_P Translation initiation 99.9 1.8E-25 6.3E-30 256.7 3.9 258 6-464 2-260 (537)
33 1wf3_A GTP-binding protein; GT 99.6 1.3E-14 4.6E-19 156.0 13.9 116 6-155 5-130 (301)
34 2hjg_A GTP-binding protein ENG 99.5 1.8E-14 6.3E-19 163.3 11.6 116 6-155 173-299 (436)
35 2lkc_A Translation initiation 99.5 9.7E-15 3.3E-19 143.5 7.1 123 3-164 3-125 (178)
36 3iev_A GTP-binding protein ERA 99.5 6.7E-14 2.3E-18 151.2 14.2 117 6-155 8-135 (308)
37 2xtp_A GTPase IMAP family memb 99.5 9.5E-14 3.2E-18 146.1 14.6 116 6-155 20-152 (260)
38 1ega_A Protein (GTP-binding pr 99.5 3.5E-14 1.2E-18 152.9 9.7 116 5-155 5-129 (301)
39 4dcu_A GTP-binding protein ENG 99.5 1.2E-13 4E-18 157.6 12.6 116 6-155 193-319 (456)
40 3lxw_A GTPase IMAP family memb 99.5 2.4E-13 8.1E-18 142.2 13.4 124 6-167 19-160 (247)
41 4dhe_A Probable GTP-binding pr 99.5 1.8E-13 6E-18 140.1 11.1 117 6-155 27-157 (223)
42 2dyk_A GTP-binding protein; GT 99.4 6.1E-13 2.1E-17 128.2 12.6 113 9-155 2-121 (161)
43 3qq5_A Small GTP-binding prote 99.4 6.9E-14 2.4E-18 156.7 6.0 115 6-155 32-153 (423)
44 1svi_A GTP-binding protein YSX 99.4 1.1E-12 3.8E-17 131.0 12.1 114 6-155 21-147 (195)
45 1ky3_A GTP-binding protein YPT 99.4 1.2E-12 4.2E-17 128.6 12.0 123 1-155 1-131 (182)
46 2fh5_B SR-beta, signal recogni 99.4 3.8E-12 1.3E-16 129.3 15.9 131 6-176 5-146 (214)
47 2bme_A RAB4A, RAS-related prot 99.4 1.1E-12 3.6E-17 129.9 11.4 122 1-155 3-128 (186)
48 3pqc_A Probable GTP-binding pr 99.4 2.4E-12 8.1E-17 128.2 13.3 113 6-155 21-146 (195)
49 3bc1_A RAS-related protein RAB 99.4 2.8E-12 9.7E-17 127.4 13.8 124 6-155 9-140 (195)
50 2il1_A RAB12; G-protein, GDP, 99.4 1.9E-12 6.6E-17 129.4 12.5 117 6-155 24-144 (192)
51 1upt_A ARL1, ADP-ribosylation 99.4 1.6E-12 5.5E-17 126.5 11.6 112 6-155 5-121 (171)
52 1zd9_A ADP-ribosylation factor 99.4 3.9E-12 1.3E-16 126.6 14.4 113 6-155 20-137 (188)
53 3kkq_A RAS-related protein M-R 99.4 2E-12 6.9E-17 127.7 12.2 117 5-155 15-136 (183)
54 3tw8_B RAS-related protein RAB 99.4 5E-13 1.7E-17 131.3 7.7 122 1-155 2-126 (181)
55 1r8s_A ADP-ribosylation factor 99.4 3.8E-12 1.3E-16 123.0 13.8 109 9-155 1-114 (164)
56 1z0f_A RAB14, member RAS oncog 99.4 2.5E-12 8.6E-17 126.0 12.5 117 6-155 13-133 (179)
57 2g6b_A RAS-related protein RAB 99.4 2E-12 6.9E-17 127.1 11.6 119 5-155 7-129 (180)
58 4bas_A ADP-ribosylation factor 99.4 2.5E-12 8.6E-17 128.7 12.3 114 6-155 15-140 (199)
59 3tkl_A RAS-related protein RAB 99.4 2E-12 6.7E-17 129.1 11.4 117 6-155 14-134 (196)
60 1mky_A Probable GTP-binding pr 99.4 2E-12 6.7E-17 146.7 12.6 112 10-155 3-123 (439)
61 1vg8_A RAS-related protein RAB 99.4 9.1E-13 3.1E-17 132.9 8.8 122 1-155 1-130 (207)
62 1wms_A RAB-9, RAB9, RAS-relate 99.4 6.5E-12 2.2E-16 123.0 14.6 117 6-155 5-129 (177)
63 1ek0_A Protein (GTP-binding pr 99.4 2.2E-12 7.7E-17 125.1 11.1 116 7-155 2-121 (170)
64 2fn4_A P23, RAS-related protei 99.4 2.6E-12 9E-17 126.1 11.6 120 1-155 2-127 (181)
65 1kao_A RAP2A; GTP-binding prot 99.4 3.1E-12 1.1E-16 123.5 11.9 114 7-155 2-121 (167)
66 2p5s_A RAS and EF-hand domain 99.4 2E-12 6.8E-17 130.0 10.7 117 6-155 26-146 (199)
67 2efe_B Small GTP-binding prote 99.4 2.3E-12 7.8E-17 126.8 10.9 117 6-155 10-130 (181)
68 3t1o_A Gliding protein MGLA; G 99.3 1.4E-12 4.7E-17 130.1 9.3 128 6-155 12-148 (198)
69 2hxs_A RAB-26, RAS-related pro 99.3 4.5E-12 1.5E-16 124.3 12.8 118 6-155 4-128 (178)
70 1u8z_A RAS-related protein RAL 99.3 1.2E-11 4.1E-16 119.5 15.3 114 7-155 3-122 (168)
71 1c1y_A RAS-related protein RAP 99.3 5.4E-12 1.8E-16 122.1 12.7 115 7-155 2-121 (167)
72 1x3s_A RAS-related protein RAB 99.3 2.3E-12 7.7E-17 128.5 10.2 117 6-155 13-134 (195)
73 2gj8_A MNME, tRNA modification 99.3 3.6E-12 1.2E-16 125.3 11.5 115 7-155 3-128 (172)
74 2fu5_C RAS-related protein RAB 99.3 9E-13 3.1E-17 130.2 7.2 122 1-155 1-126 (183)
75 1zbd_A Rabphilin-3A; G protein 99.3 2.7E-12 9.2E-17 129.2 10.7 117 6-155 6-126 (203)
76 1r2q_A RAS-related protein RAB 99.3 2.9E-12 9.8E-17 124.3 10.6 117 6-155 4-124 (170)
77 3k53_A Ferrous iron transport 99.3 1.1E-12 3.8E-17 139.0 8.3 111 8-155 3-122 (271)
78 2hjg_A GTP-binding protein ENG 99.3 9.3E-13 3.2E-17 149.3 8.1 113 9-155 4-124 (436)
79 1mky_A Probable GTP-binding pr 99.3 3.8E-12 1.3E-16 144.3 13.1 116 6-155 178-305 (439)
80 1m2o_B GTP-binding protein SAR 99.3 1.7E-12 6E-17 129.6 9.2 113 5-155 20-137 (190)
81 3clv_A RAB5 protein, putative; 99.3 1E-11 3.4E-16 124.3 14.6 65 90-154 93-159 (208)
82 3def_A T7I23.11 protein; chlor 99.3 2.9E-12 9.8E-17 135.1 11.1 115 7-155 35-164 (262)
83 1z2a_A RAS-related protein RAB 99.3 2.5E-12 8.6E-17 124.6 9.9 117 6-155 3-122 (168)
84 3llu_A RAS-related GTP-binding 99.3 7E-12 2.4E-16 125.7 13.4 117 6-155 18-142 (196)
85 2fg5_A RAB-22B, RAS-related pr 99.3 2.3E-12 8E-17 128.7 9.9 117 6-155 21-141 (192)
86 2hup_A RAS-related protein RAB 99.3 1E-11 3.5E-16 125.2 14.6 117 6-155 27-147 (201)
87 3i8s_A Ferrous iron transport 99.3 1.6E-12 5.6E-17 137.9 9.1 111 8-155 3-125 (274)
88 1zj6_A ADP-ribosylation factor 99.3 4.1E-12 1.4E-16 126.2 11.4 112 6-155 14-130 (187)
89 2h57_A ADP-ribosylation factor 99.3 2.6E-12 8.9E-17 128.0 9.7 114 6-155 19-139 (190)
90 2bcg_Y Protein YP2, GTP-bindin 99.3 2E-12 6.8E-17 130.6 8.9 122 1-155 1-126 (206)
91 1z0j_A RAB-22, RAS-related pro 99.3 4E-12 1.4E-16 123.5 10.7 117 6-155 4-124 (170)
92 2a9k_A RAS-related protein RAL 99.3 1.6E-11 5.6E-16 121.1 15.2 115 6-155 16-136 (187)
93 2y8e_A RAB-protein 6, GH09086P 99.3 4E-12 1.4E-16 124.5 10.6 117 6-155 12-132 (179)
94 1g16_A RAS-related protein SEC 99.3 2.1E-12 7.2E-17 125.4 8.5 116 7-155 2-121 (170)
95 3iby_A Ferrous iron transport 99.3 2.2E-12 7.4E-17 135.5 9.0 109 10-155 3-123 (256)
96 1z06_A RAS-related protein RAB 99.3 5.6E-12 1.9E-16 125.4 11.6 117 6-155 18-140 (189)
97 2erx_A GTP-binding protein DI- 99.3 6.9E-12 2.3E-16 121.9 11.9 115 7-155 2-122 (172)
98 2oil_A CATX-8, RAS-related pro 99.3 3.6E-12 1.2E-16 127.2 10.1 117 6-155 23-143 (193)
99 1f6b_A SAR1; gtpases, N-termin 99.3 5.1E-12 1.8E-16 127.1 11.0 113 5-155 22-139 (198)
100 4dsu_A GTPase KRAS, isoform 2B 99.3 7.4E-12 2.5E-16 123.9 12.0 116 6-155 2-122 (189)
101 2gf9_A RAS-related protein RAB 99.3 2.3E-12 7.7E-17 128.3 8.2 117 6-155 20-140 (189)
102 3a1s_A Iron(II) transport prot 99.3 4.3E-12 1.5E-16 133.4 10.7 113 6-155 3-123 (258)
103 1ksh_A ARF-like protein 2; sma 99.3 4.4E-12 1.5E-16 125.7 10.1 112 6-155 16-132 (186)
104 2ce2_X GTPase HRAS; signaling 99.3 1.1E-11 3.7E-16 119.4 12.6 113 8-155 3-121 (166)
105 2b6h_A ADP-ribosylation factor 99.3 6.4E-12 2.2E-16 125.7 11.3 113 5-155 26-143 (192)
106 1z08_A RAS-related protein RAB 99.3 4.3E-12 1.5E-16 123.3 9.6 117 6-155 4-124 (170)
107 2a5j_A RAS-related protein RAB 99.3 4.3E-12 1.5E-16 126.6 9.8 117 6-155 19-139 (191)
108 2wji_A Ferrous iron transport 99.3 6.9E-12 2.4E-16 122.1 11.1 111 8-155 3-121 (165)
109 1fzq_A ADP-ribosylation factor 99.3 9E-12 3.1E-16 123.3 12.0 112 6-155 14-130 (181)
110 3dz8_A RAS-related protein RAB 99.3 3E-12 1E-16 127.8 8.5 117 6-155 21-141 (191)
111 2ew1_A RAS-related protein RAB 99.3 7E-12 2.4E-16 126.6 11.1 117 6-155 24-144 (201)
112 4dcu_A GTP-binding protein ENG 99.3 1.9E-12 6.4E-17 147.6 7.6 114 8-155 23-144 (456)
113 3r7w_A Gtpase1, GTP-binding pr 99.3 1.6E-11 5.6E-16 132.4 14.4 116 7-155 2-128 (307)
114 1jwy_B Dynamin A GTPase domain 99.3 7.7E-12 2.6E-16 135.2 11.8 67 89-155 130-211 (315)
115 2h17_A ADP-ribosylation factor 99.3 4.1E-12 1.4E-16 125.6 8.6 112 6-155 19-135 (181)
116 2f7s_A C25KG, RAS-related prot 99.3 6.2E-12 2.1E-16 128.0 10.1 127 6-155 23-154 (217)
117 3cph_A RAS-related protein SEC 99.3 5.3E-12 1.8E-16 127.8 9.5 117 6-155 18-138 (213)
118 2bov_A RAla, RAS-related prote 99.3 3.7E-11 1.3E-15 120.8 15.6 115 6-155 12-132 (206)
119 1nrj_B SR-beta, signal recogni 99.3 3.3E-11 1.1E-15 122.7 15.0 127 6-175 10-150 (218)
120 3t5g_A GTP-binding protein RHE 99.3 4.3E-12 1.5E-16 125.0 8.1 115 6-155 4-124 (181)
121 3t5d_A Septin-7; GTP-binding p 99.3 3.5E-11 1.2E-15 127.7 15.6 123 7-155 7-157 (274)
122 3con_A GTPase NRAS; structural 99.3 1.4E-11 4.9E-16 122.4 11.8 115 6-155 19-139 (190)
123 2yc2_C IFT27, small RAB-relate 99.3 7.5E-12 2.6E-16 126.0 9.6 119 6-155 18-145 (208)
124 3reg_A RHO-like small GTPase; 99.3 1.3E-11 4.4E-16 123.3 11.2 115 6-155 21-140 (194)
125 2wjg_A FEOB, ferrous iron tran 99.3 1.2E-11 4E-16 122.7 10.8 112 7-155 6-125 (188)
126 1mh1_A RAC1; GTP-binding, GTPa 99.3 4.7E-12 1.6E-16 125.0 7.8 115 6-155 3-122 (186)
127 2nzj_A GTP-binding protein REM 99.3 7.5E-12 2.6E-16 122.2 9.1 115 7-155 3-124 (175)
128 1h65_A Chloroplast outer envel 99.3 4.4E-11 1.5E-15 126.6 15.6 116 6-155 37-167 (270)
129 3gj0_A GTP-binding nuclear pro 99.3 5.1E-12 1.8E-16 129.2 8.2 116 6-155 13-132 (221)
130 3gee_A MNME, tRNA modification 99.3 6.2E-12 2.1E-16 143.2 9.5 113 7-155 232-356 (476)
131 2o52_A RAS-related protein RAB 99.3 5.4E-12 1.8E-16 127.1 8.0 117 6-155 23-143 (200)
132 2gf0_A GTP-binding protein DI- 99.3 2.2E-11 7.4E-16 121.8 12.0 116 6-155 6-127 (199)
133 2ged_A SR-beta, signal recogni 99.3 1.2E-11 4.3E-16 123.1 9.9 129 6-177 46-188 (193)
134 2x77_A ADP-ribosylation factor 99.3 3.4E-12 1.2E-16 126.9 5.8 112 6-155 20-136 (189)
135 2qu8_A Putative nucleolar GTP- 99.2 4.5E-11 1.5E-15 123.0 14.1 115 6-155 27-155 (228)
136 3l0i_B RAS-related protein RAB 99.2 1.1E-12 3.7E-17 131.9 1.8 118 5-155 30-151 (199)
137 1moz_A ARL1, ADP-ribosylation 99.2 6.6E-12 2.3E-16 123.8 7.3 112 6-155 16-132 (183)
138 3cpj_B GTP-binding protein YPT 99.2 7.2E-12 2.5E-16 128.4 7.7 117 6-155 11-131 (223)
139 2atx_A Small GTP binding prote 99.2 1.4E-11 4.9E-16 122.9 9.6 115 6-155 16-135 (194)
140 4gzl_A RAS-related C3 botulinu 99.2 7.1E-12 2.4E-16 126.7 7.4 116 6-155 28-147 (204)
141 3lxx_A GTPase IMAP family memb 99.2 1.5E-11 5.1E-16 127.6 10.1 116 6-155 27-158 (239)
142 3geh_A MNME, tRNA modification 99.2 6.6E-12 2.2E-16 142.5 8.0 113 7-155 223-343 (462)
143 3o47_A ADP-ribosylation factor 99.2 1.6E-11 5.6E-16 133.7 10.2 112 6-155 163-279 (329)
144 4djt_A GTP-binding nuclear pro 99.2 6.7E-12 2.3E-16 127.9 6.6 118 6-155 9-130 (218)
145 3q72_A GTP-binding protein RAD 99.2 5.5E-12 1.9E-16 122.2 5.6 113 8-155 2-119 (166)
146 3oes_A GTPase rhebl1; small GT 99.2 1.1E-11 3.7E-16 124.8 7.9 116 6-155 22-142 (201)
147 1gwn_A RHO-related GTP-binding 99.2 1.6E-11 5.4E-16 124.4 8.8 121 1-155 21-145 (205)
148 3q85_A GTP-binding protein REM 99.2 2.6E-11 8.8E-16 117.8 10.0 115 8-155 2-122 (169)
149 1m7b_A RND3/RHOE small GTP-bin 99.2 1.7E-11 5.8E-16 121.4 8.8 117 5-155 4-124 (184)
150 1xzp_A Probable tRNA modificat 99.2 1.9E-11 6.4E-16 139.4 9.9 112 8-155 243-363 (482)
151 2j0v_A RAC-like GTP-binding pr 99.2 2.9E-11 1E-15 122.5 10.0 116 6-155 7-126 (212)
152 2gco_A H9, RHO-related GTP-bin 99.2 2.3E-11 7.9E-16 122.4 9.0 116 6-155 23-142 (201)
153 2atv_A RERG, RAS-like estrogen 99.2 6.6E-11 2.3E-15 118.4 12.0 114 6-155 26-145 (196)
154 2p67_A LAO/AO transport system 99.2 1.8E-11 6E-16 134.1 8.3 61 88-155 147-207 (341)
155 3bwd_D RAC-like GTP-binding pr 99.2 4.7E-12 1.6E-16 124.6 3.4 116 6-155 6-125 (182)
156 3c5c_A RAS-like protein 12; GD 99.2 1.2E-10 4E-15 115.9 13.4 115 6-155 19-140 (187)
157 2j1l_A RHO-related GTP-binding 99.2 2.9E-11 9.9E-16 123.1 9.1 115 6-155 32-151 (214)
158 2fv8_A H6, RHO-related GTP-bin 99.2 2.4E-11 8.2E-16 122.9 8.4 116 6-155 23-142 (207)
159 3q3j_B RHO-related GTP-binding 99.2 5.7E-11 2E-15 121.0 11.2 116 6-155 25-144 (214)
160 3b1v_A Ferrous iron uptake tra 99.2 2.1E-11 7.3E-16 129.0 7.8 111 7-155 2-120 (272)
161 3ihw_A Centg3; RAS, centaurin, 99.2 8.9E-11 3E-15 116.5 11.6 110 6-155 18-132 (184)
162 2qpt_A EH domain-containing pr 99.2 7.2E-11 2.4E-15 137.0 12.1 66 90-155 154-231 (550)
163 2aka_B Dynamin-1; fusion prote 99.2 1.2E-10 4E-15 124.8 12.9 67 89-155 124-205 (299)
164 2q3h_A RAS homolog gene family 99.2 3.2E-11 1.1E-15 121.0 8.0 115 6-155 18-137 (201)
165 3cbq_A GTP-binding protein REM 99.1 1.1E-10 3.8E-15 117.0 10.2 117 6-155 21-143 (195)
166 3lvq_E ARF-GAP with SH3 domain 99.1 1.2E-10 4.1E-15 134.2 11.7 112 6-155 320-436 (497)
167 4dkx_A RAS-related protein RAB 99.1 4.5E-10 1.5E-14 114.6 14.1 117 6-155 11-131 (216)
168 2iwr_A Centaurin gamma 1; ANK 99.1 2.5E-10 8.4E-15 112.0 11.6 109 6-155 5-121 (178)
169 3th5_A RAS-related C3 botulinu 98.7 7.5E-12 2.6E-16 126.2 0.0 116 6-155 28-147 (204)
170 2cxx_A Probable GTP-binding pr 99.1 4.8E-10 1.6E-14 110.9 12.6 108 9-155 2-135 (190)
171 2j69_A Bacterial dynamin-like 99.0 8.8E-10 3E-14 131.5 11.7 66 90-155 174-243 (695)
172 2zej_A Dardarin, leucine-rich 99.0 7E-10 2.4E-14 109.8 8.1 120 8-155 2-125 (184)
173 2wkq_A NPH1-1, RAS-related C3 99.0 5E-10 1.7E-14 121.5 7.4 115 7-155 154-272 (332)
174 2f9l_A RAB11B, member RAS onco 99.0 1.7E-09 5.9E-14 108.4 10.4 116 7-155 4-123 (199)
175 2g3y_A GTP-binding protein GEM 98.9 1.8E-09 6.3E-14 109.7 9.9 118 6-155 35-158 (211)
176 1lnz_A SPO0B-associated GTP-bi 98.9 8.4E-10 2.9E-14 120.4 7.7 112 10-155 160-287 (342)
177 2x2e_A Dynamin-1; nitration, h 98.9 2.7E-09 9.2E-14 117.3 11.7 67 89-155 129-210 (353)
178 2qag_A Septin-2, protein NEDD5 98.9 2.7E-09 9.4E-14 117.5 11.7 124 7-155 36-187 (361)
179 1pui_A ENGB, probable GTP-bind 98.9 3.3E-09 1.1E-13 107.0 11.0 113 7-155 25-150 (210)
180 2cjw_A GTP-binding protein GEM 98.9 2.9E-09 1E-13 106.3 10.1 118 6-155 4-127 (192)
181 3t34_A Dynamin-related protein 98.9 3.3E-09 1.1E-13 117.0 11.0 67 89-155 135-216 (360)
182 2qtf_A Protein HFLX, GTP-bindi 98.9 9E-09 3.1E-13 113.3 14.3 112 9-155 179-305 (364)
183 3r7w_B Gtpase2, GTP-binding pr 98.9 1.7E-09 5.8E-14 116.1 7.9 110 10-155 1-119 (331)
184 3dpu_A RAB family protein; roc 98.9 2.4E-09 8.3E-14 124.4 9.9 123 6-155 39-163 (535)
185 2e87_A Hypothetical protein PH 98.9 7.7E-09 2.6E-13 113.9 11.5 115 6-155 165-293 (357)
186 1oix_A RAS-related protein RAB 98.8 1.1E-08 3.7E-13 102.0 9.8 117 6-155 27-147 (191)
187 1wxq_A GTP-binding protein; st 98.8 4.9E-09 1.7E-13 116.7 7.2 38 89-126 70-114 (397)
188 3zvr_A Dynamin-1; hydrolase, D 98.7 2.8E-08 9.5E-13 117.9 11.9 67 89-155 149-230 (772)
189 3p32_A Probable GTPase RV1496/ 98.7 5.6E-09 1.9E-13 114.8 5.5 61 88-155 170-230 (355)
190 4a9a_A Ribosome-interacting GT 98.7 4.2E-08 1.4E-12 107.7 10.0 111 9-155 73-195 (376)
191 2j37_W Signal recognition part 98.6 2.7E-08 9.3E-13 113.4 6.9 134 7-155 100-253 (504)
192 2wsm_A Hydrogenase expression/ 98.6 2.2E-08 7.5E-13 101.9 4.7 133 7-155 29-167 (221)
193 3c5h_A Glucocorticoid receptor 98.5 2.9E-08 1E-12 103.8 3.2 43 113-155 162-211 (255)
194 1yrb_A ATP(GTP)binding protein 98.5 1.1E-07 3.8E-12 99.4 5.6 66 89-155 108-184 (262)
195 1udx_A The GTP-binding protein 98.4 8.7E-07 3E-11 98.8 11.5 112 10-155 159-282 (416)
196 2www_A Methylmalonic aciduria 98.4 3.5E-07 1.2E-11 100.2 8.1 61 88-155 165-225 (349)
197 2qag_C Septin-7; cell cycle, c 98.4 1.4E-06 4.6E-11 97.3 12.1 123 7-155 30-180 (418)
198 1jal_A YCHF protein; nucleotid 98.4 4.8E-07 1.6E-11 98.8 7.6 98 9-125 3-108 (363)
199 3sop_A Neuronal-specific septi 98.3 3.4E-06 1.2E-10 88.7 13.0 41 114-155 112-153 (270)
200 4fid_A G protein alpha subunit 98.3 2.1E-06 7.3E-11 92.8 9.9 68 88-155 159-241 (340)
201 2qnr_A Septin-2, protein NEDD5 98.2 6.4E-06 2.2E-10 88.2 11.8 124 7-155 17-168 (301)
202 2qag_B Septin-6, protein NEDD5 98.2 6.3E-06 2.1E-10 91.7 11.4 39 116-155 151-189 (427)
203 3ec1_A YQEH GTPase; atnos1, at 98.1 4.7E-07 1.6E-11 99.8 0.4 115 9-155 163-287 (369)
204 2dby_A GTP-binding protein; GD 98.1 7.9E-06 2.7E-10 89.6 9.2 96 9-125 2-111 (368)
205 3h2y_A GTPase family protein; 98.0 1.5E-06 5E-11 95.8 1.2 115 9-155 161-286 (368)
206 2ohf_A Protein OLA1, GTP-bindi 98.0 7.1E-06 2.4E-10 90.4 6.5 100 7-125 21-128 (396)
207 3kl4_A SRP54, signal recogniti 97.9 1.5E-05 5E-10 89.1 7.8 66 88-155 178-251 (433)
208 2xxa_A Signal recognition part 97.9 1.5E-05 5.2E-10 89.3 7.8 65 88-155 182-253 (433)
209 2qm8_A GTPase/ATPase; G protei 97.8 3.4E-06 1.2E-10 91.8 1.6 61 88-155 146-206 (337)
210 2v3c_C SRP54, signal recogniti 97.8 2.8E-05 9.5E-10 87.2 8.7 65 88-155 179-251 (432)
211 1cip_A Protein (guanine nucleo 97.8 1.7E-05 5.7E-10 86.6 6.0 67 89-155 192-273 (353)
212 3dm5_A SRP54, signal recogniti 97.8 2.3E-05 8E-10 87.5 7.2 65 88-155 181-252 (443)
213 1j8m_F SRP54, signal recogniti 97.8 3.5E-05 1.2E-09 82.2 7.9 65 88-155 179-252 (297)
214 3e1y_E Eukaryotic peptide chai 97.6 5.5E-05 1.9E-09 76.0 6.4 85 364-464 3-90 (204)
215 1zcb_A G alpha I/13; GTP-bindi 97.6 4.2E-05 1.4E-09 83.8 5.8 67 89-155 200-281 (362)
216 1ni3_A YCHF GTPase, YCHF GTP-b 97.6 0.00012 4.1E-09 80.8 8.8 100 8-125 20-127 (392)
217 4dzz_A Plasmid partitioning pr 97.6 0.00014 4.8E-09 72.5 8.4 64 89-155 75-143 (206)
218 2hf9_A Probable hydrogenase ni 97.6 0.00014 4.8E-09 73.7 8.4 59 89-155 118-177 (226)
219 3ohm_A Guanine nucleotide-bind 97.5 0.00011 3.7E-09 79.1 6.1 67 89-155 166-247 (327)
220 3cwq_A Para family chromosome 97.4 0.00051 1.8E-08 69.1 10.5 66 88-155 66-133 (209)
221 1f5n_A Interferon-induced guan 97.4 0.00016 5.5E-09 83.7 7.2 107 5-140 35-147 (592)
222 1azs_C GS-alpha; complex (lyas 97.4 0.0001 3.5E-09 81.5 5.3 67 89-155 216-297 (402)
223 1tq4_A IIGP1, interferon-induc 97.1 0.00078 2.7E-08 74.8 8.4 117 8-157 69-190 (413)
224 3szr_A Interferon-induced GTP- 97.0 0.002 6.8E-08 75.5 11.0 66 90-155 147-227 (608)
225 1zu4_A FTSY; GTPase, signal re 97.0 0.00073 2.5E-08 72.7 6.6 63 88-155 190-267 (320)
226 1puj_A YLQF, conserved hypothe 97.0 0.00045 1.5E-08 73.0 4.7 25 6-33 118-142 (282)
227 2xtz_A Guanine nucleotide-bind 97.0 0.00026 9E-09 77.1 3.0 68 88-155 181-263 (354)
228 1u0l_A Probable GTPase ENGC; p 97.0 0.00047 1.6E-08 73.6 4.6 63 91-155 64-128 (301)
229 2ffh_A Protein (FFH); SRP54, s 96.9 0.00065 2.2E-08 75.7 5.7 65 88-155 179-250 (425)
230 2yhs_A FTSY, cell division pro 96.8 0.0014 4.7E-08 74.0 6.7 64 89-155 375-451 (503)
231 3e70_C DPA, signal recognition 96.5 0.0039 1.3E-07 67.2 7.8 65 89-155 211-281 (328)
232 3cnl_A YLQF, putative uncharac 96.5 0.0011 3.8E-08 69.1 3.0 22 9-33 100-121 (262)
233 1rj9_A FTSY, signal recognitio 96.4 0.0052 1.8E-07 65.5 8.0 63 90-155 185-260 (304)
234 2px0_A Flagellar biosynthesis 96.4 0.0055 1.9E-07 65.0 7.8 64 88-155 181-252 (296)
235 1vma_A Cell division protein F 96.4 0.0031 1.1E-07 67.2 5.8 65 88-155 185-262 (306)
236 1puj_A YLQF, conserved hypothe 96.3 0.0035 1.2E-07 66.1 6.0 60 94-155 3-63 (282)
237 1ls1_A Signal recognition part 96.1 0.005 1.7E-07 65.3 5.5 64 89-155 180-250 (295)
238 3end_A Light-independent proto 96.0 0.0065 2.2E-07 64.6 6.1 66 88-154 155-225 (307)
239 3q5d_A Atlastin-1; G protein, 95.9 0.021 7.2E-07 63.8 9.8 26 6-34 65-90 (447)
240 3ec1_A YQEH GTPase; atnos1, at 95.6 0.013 4.5E-07 64.2 6.4 62 91-155 50-111 (369)
241 2ph1_A Nucleotide-binding prot 95.4 0.03 1E-06 58.0 8.1 67 88-154 127-194 (262)
242 3cnl_A YLQF, putative uncharac 94.9 0.0061 2.1E-07 63.5 1.1 54 98-155 5-59 (262)
243 3b9q_A Chloroplast SRP recepto 94.8 0.037 1.3E-06 58.8 6.7 63 90-155 184-259 (302)
244 3h2y_A GTPase family protein; 94.6 0.032 1.1E-06 61.0 5.8 59 94-155 51-109 (368)
245 2yv5_A YJEQ protein; hydrolase 94.4 0.0094 3.2E-07 63.4 1.1 56 100-155 66-123 (302)
246 1wcv_1 SOJ, segregation protei 94.1 0.13 4.5E-06 52.8 9.0 66 88-155 110-182 (257)
247 1g3q_A MIND ATPase, cell divis 94.1 0.052 1.8E-06 54.9 5.8 66 88-155 110-176 (237)
248 2og2_A Putative signal recogni 94.0 0.14 4.7E-06 55.6 9.2 64 90-155 241-316 (359)
249 1hyq_A MIND, cell division inh 93.9 0.057 2E-06 55.6 5.7 66 88-155 109-175 (263)
250 3la6_A Tyrosine-protein kinase 93.5 0.089 3E-06 55.3 6.4 66 89-155 201-267 (286)
251 3bfv_A CAPA1, CAPB2, membrane 93.4 0.11 3.8E-06 54.1 6.9 66 89-155 191-257 (271)
252 3l82_B F-box only protein 4; T 93.3 0.11 3.6E-06 51.8 6.0 65 91-155 97-176 (227)
253 3kjh_A CO dehydrogenase/acetyl 93.2 0.048 1.6E-06 55.4 3.7 66 88-155 130-196 (254)
254 2oze_A ORF delta'; para, walke 93.2 0.15 5E-06 53.7 7.5 66 88-155 153-225 (298)
255 1xe1_A Hypothetical protein PF 92.9 0.3 1E-05 43.4 7.7 50 382-447 48-97 (116)
256 3cio_A ETK, tyrosine-protein k 92.8 0.18 6.1E-06 53.3 7.5 67 88-155 212-279 (299)
257 1t9h_A YLOQ, probable GTPase E 92.7 0.14 4.7E-06 54.4 6.4 46 110-155 83-130 (307)
258 1t9h_A YLOQ, probable GTPase E 92.7 0.043 1.5E-06 58.3 2.4 20 10-32 175-194 (307)
259 3k9g_A PF-32 protein; ssgcid, 92.2 0.23 7.8E-06 51.2 7.2 66 88-155 143-210 (267)
260 3q9l_A Septum site-determining 92.1 0.16 5.3E-06 52.0 5.9 65 89-155 113-186 (260)
261 2xj4_A MIPZ; replication, cell 91.9 0.087 3E-06 55.3 3.6 36 88-125 102-137 (286)
262 3ea0_A ATPase, para family; al 91.6 0.16 5.4E-06 51.5 5.1 65 89-155 118-185 (245)
263 2yv5_A YJEQ protein; hydrolase 91.4 0.2 6.9E-06 53.0 5.9 20 10-32 167-186 (302)
264 1bif_A 6-phosphofructo-2-kinas 90.9 0.15 5.2E-06 57.5 4.5 27 6-35 37-63 (469)
265 1byi_A Dethiobiotin synthase; 90.3 0.73 2.5E-05 45.8 8.5 68 88-155 107-180 (224)
266 3l2o_B F-box only protein 4; s 90.0 0.4 1.4E-05 50.0 6.3 58 98-155 195-261 (312)
267 1u0l_A Probable GTPase ENGC; p 89.7 0.21 7.3E-06 52.8 4.2 20 10-32 171-190 (301)
268 2cve_A Hypothetical protein TT 88.2 0.4 1.4E-05 46.7 4.5 99 671-776 80-190 (191)
269 1kgd_A CASK, peripheral plasma 88.2 0.25 8.5E-06 47.7 3.1 23 10-35 7-29 (180)
270 3zvl_A Bifunctional polynucleo 88.2 0.87 3E-05 50.4 7.9 23 8-33 258-280 (416)
271 4ido_A Atlastin-1; GTPase, GTP 88.0 1.7 5.7E-05 48.3 10.0 26 6-34 65-90 (457)
272 1ye8_A Protein THEP1, hypothet 88.0 0.27 9.1E-06 47.7 3.2 24 10-36 2-25 (178)
273 1lvg_A Guanylate kinase, GMP k 87.5 0.26 8.8E-06 48.5 2.8 22 10-34 6-27 (198)
274 1vi7_A Hypothetical protein YI 87.0 0.28 9.6E-06 48.8 2.6 101 671-777 92-203 (217)
275 3a00_A Guanylate kinase, GMP k 86.8 0.3 1E-05 47.4 2.8 21 11-34 4-24 (186)
276 3tr0_A Guanylate kinase, GMP k 86.7 0.33 1.1E-05 47.5 3.0 23 10-35 9-31 (205)
277 3c8u_A Fructokinase; YP_612366 86.6 0.32 1.1E-05 48.1 2.9 24 7-33 21-44 (208)
278 1znw_A Guanylate kinase, GMP k 86.6 0.33 1.1E-05 48.0 3.0 23 10-35 22-44 (207)
279 1uf9_A TT1252 protein; P-loop, 86.1 0.43 1.5E-05 46.5 3.5 30 2-34 2-31 (203)
280 1htw_A HI0065; nucleotide-bind 85.5 0.42 1.4E-05 45.3 3.0 23 10-35 35-57 (158)
281 1knq_A Gluconate kinase; ALFA/ 85.5 0.55 1.9E-05 44.7 3.9 26 9-37 9-34 (175)
282 1z6g_A Guanylate kinase; struc 85.5 0.4 1.4E-05 47.9 3.0 23 10-35 25-47 (218)
283 4gp7_A Metallophosphoesterase; 85.3 0.39 1.3E-05 46.0 2.7 19 10-31 11-29 (171)
284 1zp6_A Hypothetical protein AT 85.0 0.38 1.3E-05 46.5 2.5 21 10-33 11-31 (191)
285 1s96_A Guanylate kinase, GMP k 85.0 0.45 1.5E-05 47.8 3.0 23 10-35 18-40 (219)
286 1kag_A SKI, shikimate kinase I 84.9 0.52 1.8E-05 44.7 3.4 24 10-36 6-29 (173)
287 4g1u_C Hemin import ATP-bindin 84.8 0.57 2E-05 48.5 3.9 19 10-31 39-57 (266)
288 2rcn_A Probable GTPase ENGC; Y 84.7 1.6 5.6E-05 47.0 7.5 43 111-155 128-173 (358)
289 4eun_A Thermoresistant glucoki 84.6 0.51 1.8E-05 46.3 3.2 26 9-37 30-55 (200)
290 3tau_A Guanylate kinase, GMP k 84.6 0.45 1.6E-05 47.1 2.9 24 9-35 9-32 (208)
291 3asz_A Uridine kinase; cytidin 84.4 0.48 1.6E-05 46.7 2.9 24 8-34 6-29 (211)
292 1mv5_A LMRA, multidrug resista 84.4 0.65 2.2E-05 47.3 4.0 19 10-31 30-48 (243)
293 3ney_A 55 kDa erythrocyte memb 84.3 0.53 1.8E-05 46.4 3.1 24 9-35 20-43 (197)
294 3kb2_A SPBC2 prophage-derived 84.1 0.58 2E-05 44.1 3.3 24 10-36 3-26 (173)
295 3lw7_A Adenylate kinase relate 84.0 0.57 1.9E-05 44.1 3.2 23 10-36 3-25 (179)
296 1np6_A Molybdopterin-guanine d 83.8 0.58 2E-05 45.1 3.2 22 10-34 8-29 (174)
297 3tif_A Uncharacterized ABC tra 83.8 0.47 1.6E-05 48.1 2.7 19 10-31 33-51 (235)
298 2vhj_A Ntpase P4, P4; non- hyd 83.5 1.4 4.8E-05 46.8 6.2 21 11-34 126-146 (331)
299 4fcw_A Chaperone protein CLPB; 83.5 4.2 0.00014 42.3 10.1 22 10-34 49-70 (311)
300 2j41_A Guanylate kinase; GMP, 83.5 0.51 1.8E-05 46.1 2.7 22 10-34 8-29 (207)
301 2pcj_A ABC transporter, lipopr 83.1 0.5 1.7E-05 47.5 2.5 19 10-31 32-50 (224)
302 1xjc_A MOBB protein homolog; s 83.0 0.66 2.3E-05 44.5 3.1 21 10-33 6-26 (169)
303 3ug7_A Arsenical pump-driving 83.0 3.4 0.00012 44.4 9.2 42 114-155 237-279 (349)
304 1ex7_A Guanylate kinase; subst 82.8 0.62 2.1E-05 45.5 2.9 23 10-35 3-25 (186)
305 2bbw_A Adenylate kinase 4, AK4 82.8 0.7 2.4E-05 46.9 3.5 28 8-38 27-54 (246)
306 2onk_A Molybdate/tungstate ABC 82.5 0.6 2.1E-05 47.5 2.8 20 10-32 26-45 (240)
307 3t61_A Gluconokinase; PSI-biol 82.5 0.74 2.5E-05 45.1 3.4 25 9-36 19-43 (202)
308 2bdt_A BH3686; alpha-beta prot 82.5 0.59 2E-05 45.2 2.7 21 10-33 4-24 (189)
309 3ez9_A Para; DNA binding, wing 82.4 1.6 5.6E-05 47.8 6.5 65 88-154 246-322 (403)
310 2jeo_A Uridine-cytidine kinase 82.2 0.69 2.4E-05 47.0 3.1 27 8-37 25-51 (245)
311 3pg5_A Uncharacterized protein 82.1 1.3 4.4E-05 47.9 5.5 35 89-125 153-187 (361)
312 1ly1_A Polynucleotide kinase; 82.0 0.72 2.5E-05 43.8 3.1 22 9-33 3-24 (181)
313 3tqc_A Pantothenate kinase; bi 82.0 0.7 2.4E-05 49.2 3.1 27 6-35 90-116 (321)
314 3aez_A Pantothenate kinase; tr 81.9 0.67 2.3E-05 49.2 3.0 24 7-33 89-112 (312)
315 2qor_A Guanylate kinase; phosp 81.9 0.74 2.5E-05 45.2 3.2 24 9-35 13-36 (204)
316 2wwf_A Thymidilate kinase, put 81.9 0.77 2.6E-05 45.1 3.3 25 7-34 9-33 (212)
317 2cbz_A Multidrug resistance-as 81.7 0.64 2.2E-05 47.2 2.7 19 10-31 33-51 (237)
318 3b85_A Phosphate starvation-in 81.7 0.59 2E-05 46.5 2.3 22 10-34 24-45 (208)
319 2pze_A Cystic fibrosis transme 81.6 0.64 2.2E-05 46.9 2.6 19 10-31 36-54 (229)
320 1b0u_A Histidine permease; ABC 81.6 0.64 2.2E-05 48.0 2.6 19 10-31 34-52 (262)
321 1g6h_A High-affinity branched- 81.6 0.64 2.2E-05 47.8 2.7 19 10-31 35-53 (257)
322 2f1r_A Molybdopterin-guanine d 81.6 0.38 1.3E-05 46.3 0.8 21 10-33 4-24 (171)
323 3of5_A Dethiobiotin synthetase 81.4 3.3 0.00011 41.6 7.8 68 88-155 109-182 (228)
324 3gfo_A Cobalt import ATP-bindi 81.3 0.66 2.2E-05 48.3 2.6 19 10-31 36-54 (275)
325 1sgw_A Putative ABC transporte 81.3 0.68 2.3E-05 46.3 2.6 19 10-31 37-55 (214)
326 2i3b_A HCR-ntpase, human cance 81.3 0.82 2.8E-05 44.7 3.2 22 10-34 3-24 (189)
327 1jjv_A Dephospho-COA kinase; P 81.2 0.81 2.8E-05 44.9 3.1 21 9-32 3-23 (206)
328 2d2e_A SUFC protein; ABC-ATPas 81.1 0.72 2.5E-05 47.2 2.8 20 10-32 31-50 (250)
329 1cke_A CK, MSSA, protein (cyti 81.1 0.85 2.9E-05 45.3 3.3 25 9-36 6-30 (227)
330 2eyu_A Twitching motility prot 81.1 0.86 3E-05 47.0 3.4 21 10-33 27-47 (261)
331 1ji0_A ABC transporter; ATP bi 81.1 0.69 2.4E-05 47.0 2.7 19 10-31 34-52 (240)
332 2jaq_A Deoxyguanosine kinase; 81.1 0.89 3.1E-05 44.2 3.4 24 10-36 2-25 (205)
333 2ff7_A Alpha-hemolysin translo 81.0 0.7 2.4E-05 47.3 2.7 19 10-31 37-55 (247)
334 3ec2_A DNA replication protein 81.0 0.94 3.2E-05 43.4 3.5 22 9-33 39-60 (180)
335 3vaa_A Shikimate kinase, SK; s 80.8 0.95 3.2E-05 44.3 3.5 24 10-36 27-50 (199)
336 1tev_A UMP-CMP kinase; ploop, 80.8 0.98 3.3E-05 43.5 3.6 26 8-36 3-28 (196)
337 2rcn_A Probable GTPase ENGC; Y 80.7 0.78 2.7E-05 49.6 3.0 21 10-33 217-237 (358)
338 2if2_A Dephospho-COA kinase; a 80.6 0.75 2.6E-05 45.0 2.7 21 10-33 3-23 (204)
339 2ehv_A Hypothetical protein PH 80.6 0.76 2.6E-05 46.3 2.8 20 10-32 32-51 (251)
340 2ghi_A Transport protein; mult 80.6 0.73 2.5E-05 47.5 2.7 19 10-31 48-66 (260)
341 2v9p_A Replication protein E1; 80.5 0.85 2.9E-05 48.2 3.2 22 10-34 128-149 (305)
342 3fb4_A Adenylate kinase; psych 80.5 0.95 3.3E-05 44.7 3.4 25 10-37 2-26 (216)
343 1odf_A YGR205W, hypothetical 3 80.4 0.84 2.9E-05 47.9 3.1 25 6-33 29-53 (290)
344 3dl0_A Adenylate kinase; phosp 80.4 1 3.5E-05 44.4 3.6 25 10-37 2-26 (216)
345 2olj_A Amino acid ABC transpor 80.3 0.75 2.6E-05 47.5 2.6 19 10-31 52-70 (263)
346 2qi9_C Vitamin B12 import ATP- 80.0 0.79 2.7E-05 46.9 2.6 19 10-31 28-46 (249)
347 1vpl_A ABC transporter, ATP-bi 80.0 0.78 2.7E-05 47.2 2.6 19 10-31 43-61 (256)
348 3trf_A Shikimate kinase, SK; a 79.8 1.1 3.7E-05 43.0 3.5 25 9-36 6-30 (185)
349 1qhx_A CPT, protein (chloramph 79.8 1 3.5E-05 42.8 3.3 24 10-36 5-28 (178)
350 3kta_A Chromosome segregation 79.8 0.97 3.3E-05 43.2 3.1 20 17-36 32-51 (182)
351 2zu0_C Probable ATP-dependent 79.7 0.84 2.9E-05 47.2 2.8 20 10-32 48-67 (267)
352 3lnc_A Guanylate kinase, GMP k 79.7 0.59 2E-05 46.9 1.6 20 10-32 29-48 (231)
353 3cm0_A Adenylate kinase; ATP-b 79.6 1.2 4.1E-05 42.6 3.8 25 9-36 5-29 (186)
354 4a74_A DNA repair and recombin 79.6 0.87 3E-05 45.2 2.8 21 10-33 27-47 (231)
355 2rhm_A Putative kinase; P-loop 79.6 1.1 3.8E-05 43.1 3.5 26 8-36 5-30 (193)
356 2ixe_A Antigen peptide transpo 79.5 0.82 2.8E-05 47.4 2.7 19 10-31 47-65 (271)
357 2yz2_A Putative ABC transporte 79.5 0.83 2.8E-05 47.2 2.7 19 10-31 35-53 (266)
358 2afh_E Nitrogenase iron protei 79.4 2.3 7.8E-05 44.1 6.1 67 88-154 117-189 (289)
359 3uie_A Adenylyl-sulfate kinase 79.2 0.88 3E-05 44.5 2.7 23 9-34 26-48 (200)
360 3lh2_S 4E10_1VI7A_S0_002_N (T8 79.2 0.61 2.1E-05 38.3 1.2 53 721-776 18-70 (76)
361 2qt1_A Nicotinamide riboside k 79.1 0.99 3.4E-05 44.3 3.0 23 8-33 21-43 (207)
362 1d1n_A Initiation factor 2; be 79.1 3.1 0.00011 35.8 5.6 65 372-447 11-75 (99)
363 2ihy_A ABC transporter, ATP-bi 79.0 0.87 3E-05 47.5 2.6 19 10-31 49-67 (279)
364 2nq2_C Hypothetical ABC transp 79.0 0.87 3E-05 46.7 2.6 19 10-31 33-51 (253)
365 1nks_A Adenylate kinase; therm 78.7 0.96 3.3E-05 43.4 2.7 22 10-34 3-24 (194)
366 3tlx_A Adenylate kinase 2; str 78.5 1.3 4.4E-05 45.0 3.7 28 7-37 28-55 (243)
367 3hr8_A Protein RECA; alpha and 78.5 4.3 0.00015 43.8 8.0 22 10-34 63-84 (356)
368 1via_A Shikimate kinase; struc 78.3 1.1 3.9E-05 42.6 3.0 24 10-36 6-29 (175)
369 1rz3_A Hypothetical protein rb 78.2 1.1 3.6E-05 44.1 2.9 23 8-33 22-44 (201)
370 1uj2_A Uridine-cytidine kinase 78.1 1.4 4.6E-05 45.0 3.8 27 7-36 21-47 (252)
371 3n70_A Transport activator; si 78.1 3.1 0.00011 38.2 6.0 22 8-32 24-45 (145)
372 1f2t_A RAD50 ABC-ATPase; DNA d 78.0 1.2 4E-05 41.6 3.0 18 17-34 29-46 (149)
373 2cdn_A Adenylate kinase; phosp 77.9 1.3 4.6E-05 43.1 3.5 28 6-36 18-45 (201)
374 2plr_A DTMP kinase, probable t 77.7 1.4 4.7E-05 43.1 3.5 25 9-36 5-29 (213)
375 1cp2_A CP2, nitrogenase iron p 77.6 1.4 4.7E-05 45.2 3.7 67 88-154 114-186 (269)
376 1kht_A Adenylate kinase; phosp 77.6 1.2 3.9E-05 42.8 2.9 23 9-34 4-26 (192)
377 1sq5_A Pantothenate kinase; P- 77.3 1.1 3.7E-05 47.4 2.8 24 8-34 80-103 (308)
378 3zq6_A Putative arsenical pump 77.2 5.3 0.00018 42.3 8.3 41 115-155 223-264 (324)
379 1ukz_A Uridylate kinase; trans 76.8 1.6 5.5E-05 42.5 3.8 27 7-36 14-40 (203)
380 2pjz_A Hypothetical protein ST 76.7 1.2 4.1E-05 46.0 2.8 19 10-31 32-50 (263)
381 1qf9_A UMP/CMP kinase, protein 76.6 1.7 6E-05 41.5 3.9 26 8-36 6-31 (194)
382 2kjq_A DNAA-related protein; s 76.6 1.2 4E-05 41.6 2.6 21 10-33 38-58 (149)
383 4e22_A Cytidylate kinase; P-lo 76.6 1.5 5.2E-05 44.7 3.6 26 9-37 28-53 (252)
384 2v1u_A Cell division control p 76.6 7.9 0.00027 41.3 9.6 25 7-34 43-67 (387)
385 3jvv_A Twitching mobility prot 76.4 1.4 4.8E-05 47.6 3.4 21 10-33 125-145 (356)
386 2v54_A DTMP kinase, thymidylat 76.3 1.3 4.3E-05 43.2 2.8 23 8-33 4-26 (204)
387 3tui_C Methionine import ATP-b 76.2 1.2 4.1E-05 48.2 2.8 20 10-32 56-75 (366)
388 2pt5_A Shikimate kinase, SK; a 76.2 1.6 5.4E-05 41.0 3.4 24 10-36 2-25 (168)
389 2gza_A Type IV secretion syste 76.0 1.1 3.8E-05 48.5 2.5 21 10-33 177-197 (361)
390 2bbs_A Cystic fibrosis transme 76.0 1.1 3.9E-05 46.9 2.5 19 10-31 66-84 (290)
391 1y63_A LMAJ004144AAA protein; 75.9 1.8 6E-05 41.7 3.7 24 8-34 10-33 (184)
392 2ze6_A Isopentenyl transferase 75.8 1.4 4.9E-05 45.0 3.1 24 10-36 3-26 (253)
393 1vht_A Dephospho-COA kinase; s 75.7 1.5 5E-05 43.5 3.1 23 8-33 4-26 (218)
394 1lw7_A Transcriptional regulat 75.7 1.1 3.9E-05 48.4 2.5 23 9-34 171-193 (365)
395 1aky_A Adenylate kinase; ATP:A 75.6 1.5 5.3E-05 43.4 3.3 26 8-36 4-29 (220)
396 2pbr_A DTMP kinase, thymidylat 75.3 1.4 5E-05 42.2 2.9 21 10-33 2-22 (195)
397 1nn5_A Similar to deoxythymidy 75.2 1.3 4.6E-05 43.3 2.7 23 8-33 9-31 (215)
398 1zd8_A GTP:AMP phosphotransfer 75.2 1.6 5.6E-05 43.4 3.4 27 7-36 6-32 (227)
399 3nh6_A ATP-binding cassette SU 75.2 0.92 3.1E-05 48.0 1.5 20 10-32 82-101 (306)
400 3r20_A Cytidylate kinase; stru 75.2 1.6 5.5E-05 44.1 3.2 27 7-36 8-34 (233)
401 2c95_A Adenylate kinase 1; tra 75.0 1.5 5.2E-05 42.2 3.0 26 8-36 9-34 (196)
402 3fvq_A Fe(3+) IONS import ATP- 75.0 1.3 4.4E-05 47.9 2.6 20 10-32 32-51 (359)
403 1z47_A CYSA, putative ABC-tran 74.8 1.4 4.8E-05 47.6 2.8 20 10-32 43-62 (355)
404 3iij_A Coilin-interacting nucl 74.7 1.7 5.7E-05 41.5 3.1 25 9-36 12-36 (180)
405 2chg_A Replication factor C sm 74.7 12 0.00039 36.1 9.5 22 10-34 40-61 (226)
406 2z0h_A DTMP kinase, thymidylat 74.6 1.4 4.8E-05 42.5 2.7 21 10-33 2-22 (197)
407 2ewv_A Twitching motility prot 74.6 1.6 5.5E-05 47.4 3.3 21 10-33 138-158 (372)
408 1zuh_A Shikimate kinase; alpha 74.5 1.9 6.5E-05 40.6 3.5 24 10-36 9-32 (168)
409 2yyz_A Sugar ABC transporter, 74.4 1.4 4.9E-05 47.6 2.8 20 10-32 31-50 (359)
410 2bwj_A Adenylate kinase 5; pho 74.4 1.5 5.2E-05 42.4 2.8 26 8-36 12-37 (199)
411 1e4v_A Adenylate kinase; trans 74.3 1.7 5.9E-05 42.9 3.2 24 10-36 2-25 (214)
412 2iyv_A Shikimate kinase, SK; t 74.2 1.8 6.2E-05 41.4 3.2 24 10-36 4-27 (184)
413 1gtv_A TMK, thymidylate kinase 74.2 0.79 2.7E-05 45.0 0.7 22 10-34 2-23 (214)
414 2yvu_A Probable adenylyl-sulfa 74.2 1.9 6.6E-05 41.3 3.5 25 7-34 12-36 (186)
415 1u94_A RECA protein, recombina 74.0 6.7 0.00023 42.2 8.0 21 11-34 66-86 (356)
416 2pt7_A CAG-ALFA; ATPase, prote 74.0 1.1 3.7E-05 47.9 1.7 20 10-32 173-192 (330)
417 1sxj_A Activator 1 95 kDa subu 74.0 11 0.00038 42.6 10.3 25 9-36 78-102 (516)
418 2it1_A 362AA long hypothetical 73.8 1.5 5.1E-05 47.5 2.8 20 10-32 31-50 (362)
419 2grj_A Dephospho-COA kinase; T 73.8 2.3 7.9E-05 41.5 4.0 28 6-36 10-37 (192)
420 1gvn_B Zeta; postsegregational 73.7 1.8 6.2E-05 45.2 3.3 26 7-35 32-57 (287)
421 1g29_1 MALK, maltose transport 73.6 1.5 5.3E-05 47.6 2.8 20 10-32 31-50 (372)
422 2vp4_A Deoxynucleoside kinase; 73.6 1.1 3.9E-05 44.9 1.7 21 9-32 21-41 (230)
423 1e6c_A Shikimate kinase; phosp 73.5 1.9 6.3E-05 40.7 3.1 24 10-36 4-27 (173)
424 1zak_A Adenylate kinase; ATP:A 73.4 1.6 5.6E-05 43.2 2.8 26 8-36 5-30 (222)
425 2w0m_A SSO2452; RECA, SSPF, un 73.4 1.8 6.2E-05 42.8 3.2 21 10-33 25-45 (235)
426 1v43_A Sugar-binding transport 73.3 1.6 5.3E-05 47.5 2.8 20 10-32 39-58 (372)
427 2x8a_A Nuclear valosin-contain 73.3 1.9 6.5E-05 44.6 3.4 22 11-35 47-68 (274)
428 3rlf_A Maltose/maltodextrin im 73.2 1.6 5.4E-05 47.6 2.8 19 10-31 31-49 (381)
429 2pez_A Bifunctional 3'-phospho 72.9 1.8 6.1E-05 41.3 2.8 22 9-33 6-27 (179)
430 1p9r_A General secretion pathw 72.9 1.8 6.1E-05 47.8 3.2 22 10-34 169-190 (418)
431 3sr0_A Adenylate kinase; phosp 72.9 2.1 7.3E-05 42.3 3.5 26 10-38 2-27 (206)
432 2vli_A Antibiotic resistance p 72.8 1.6 5.4E-05 41.6 2.5 25 9-36 6-30 (183)
433 4a1f_A DNAB helicase, replicat 72.7 3.2 0.00011 44.4 5.0 18 17-34 52-69 (338)
434 2axn_A 6-phosphofructo-2-kinas 72.7 3 0.0001 47.5 5.1 26 7-35 34-59 (520)
435 2p5t_B PEZT; postsegregational 72.6 1.6 5.5E-05 44.5 2.6 27 7-36 31-57 (253)
436 1ak2_A Adenylate kinase isoenz 72.4 2.1 7.2E-05 42.9 3.3 27 7-36 15-41 (233)
437 3cmu_A Protein RECA, recombina 72.1 8.6 0.00029 50.4 9.5 24 9-35 1428-1451(2050)
438 3qf7_A RAD50; ABC-ATPase, ATPa 71.9 1.8 6.3E-05 46.8 3.0 21 11-34 26-46 (365)
439 1nij_A Hypothetical protein YJ 71.9 1.4 4.9E-05 46.7 2.1 18 17-34 10-27 (318)
440 3ez2_A Plasmid partition prote 71.8 5.3 0.00018 43.6 6.7 36 88-125 243-278 (398)
441 2woj_A ATPase GET3; tail-ancho 71.8 4.5 0.00015 43.5 6.0 41 113-153 234-275 (354)
442 2zr9_A Protein RECA, recombina 71.7 5.6 0.00019 42.7 6.7 21 11-34 64-84 (349)
443 2f6r_A COA synthase, bifunctio 71.4 2 6.8E-05 44.7 3.0 23 7-32 74-96 (281)
444 3nwj_A ATSK2; P loop, shikimat 70.9 2.2 7.4E-05 43.6 3.1 24 10-36 50-73 (250)
445 3pfi_A Holliday junction ATP-d 70.7 10 0.00035 39.9 8.5 23 9-34 56-78 (338)
446 2b8t_A Thymidine kinase; deoxy 70.7 2.2 7.6E-05 42.8 3.0 41 115-155 89-129 (223)
447 2oap_1 GSPE-2, type II secreti 70.6 1.6 5.4E-05 49.7 2.1 20 10-32 262-281 (511)
448 2xb4_A Adenylate kinase; ATP-b 70.5 2.5 8.5E-05 42.1 3.4 24 10-36 2-25 (223)
449 2cvh_A DNA repair and recombin 70.4 2.2 7.6E-05 41.8 3.0 20 11-33 23-42 (220)
450 3d31_A Sulfate/molybdate ABC t 70.4 1.4 4.7E-05 47.5 1.5 20 10-32 28-47 (348)
451 1ixz_A ATP-dependent metallopr 70.3 2.4 8.3E-05 42.9 3.3 22 11-35 52-73 (254)
452 3gd7_A Fusion complex of cysti 69.9 2 6.8E-05 47.0 2.6 20 10-32 49-68 (390)
453 3syl_A Protein CBBX; photosynt 69.2 7.7 0.00026 40.2 7.0 23 9-34 68-90 (309)
454 1q57_A DNA primase/helicase; d 69.1 3.6 0.00012 46.5 4.7 61 91-151 327-405 (503)
455 1xp8_A RECA protein, recombina 69.0 11 0.00038 40.7 8.3 21 11-34 77-97 (366)
456 3be4_A Adenylate kinase; malar 68.9 2.6 8.9E-05 41.7 3.1 25 9-36 6-30 (217)
457 1jbk_A CLPB protein; beta barr 68.8 3 0.0001 39.4 3.4 23 9-34 44-66 (195)
458 3a4m_A L-seryl-tRNA(SEC) kinas 68.7 3.1 0.00011 42.5 3.7 23 9-34 5-27 (260)
459 1qvr_A CLPB protein; coiled co 68.6 22 0.00075 43.0 11.8 22 10-34 590-611 (854)
460 1cr0_A DNA primase/helicase; R 68.6 2.5 8.4E-05 44.1 3.0 20 11-33 38-57 (296)
461 2bjv_A PSP operon transcriptio 68.6 12 0.00041 37.9 8.2 24 9-35 30-53 (265)
462 3ake_A Cytidylate kinase; CMP 68.4 2.9 0.0001 40.5 3.4 24 10-36 4-27 (208)
463 1hqc_A RUVB; extended AAA-ATPa 68.4 12 0.0004 39.1 8.3 24 9-35 39-62 (324)
464 3qks_A DNA double-strand break 68.3 2.7 9.1E-05 41.4 3.0 19 17-35 29-47 (203)
465 2npi_A Protein CLP1; CLP1-PCF1 68.2 2.3 8E-05 47.6 2.8 21 10-33 140-160 (460)
466 3umf_A Adenylate kinase; rossm 67.9 3 0.0001 41.6 3.3 25 11-38 32-56 (217)
467 1a7j_A Phosphoribulokinase; tr 67.8 1.5 5E-05 46.0 1.0 23 8-33 5-27 (290)
468 1oxx_K GLCV, glucose, ABC tran 67.7 1.4 4.7E-05 47.6 0.8 19 10-31 33-51 (353)
469 3io5_A Recombination and repai 67.7 8.5 0.00029 40.7 6.8 21 11-34 31-51 (333)
470 1n0w_A DNA repair protein RAD5 67.6 2.7 9.3E-05 41.9 3.0 22 10-34 26-47 (243)
471 2obl_A ESCN; ATPase, hydrolase 67.5 2.8 9.5E-05 45.1 3.2 23 10-35 73-95 (347)
472 1iy2_A ATP-dependent metallopr 67.5 3 0.0001 43.0 3.3 22 11-35 76-97 (278)
473 1m7g_A Adenylylsulfate kinase; 66.7 3.1 0.00011 40.9 3.1 22 9-33 26-47 (211)
474 3euj_A Chromosome partition pr 66.5 2.8 9.5E-05 47.1 3.0 21 10-33 31-51 (483)
475 3gmt_A Adenylate kinase; ssgci 66.3 3.5 0.00012 41.5 3.4 29 6-37 6-34 (230)
476 2w58_A DNAI, primosome compone 65.8 3.6 0.00012 39.9 3.4 23 9-34 55-77 (202)
477 1in4_A RUVB, holliday junction 65.6 3.1 0.0001 44.3 3.0 24 10-36 53-76 (334)
478 3qkt_A DNA double-strand break 65.4 3.1 0.0001 44.5 3.0 17 17-33 29-45 (339)
479 1ojl_A Transcriptional regulat 65.3 11 0.00038 39.4 7.3 25 8-35 25-49 (304)
480 3d3q_A TRNA delta(2)-isopenten 65.2 4 0.00014 43.6 3.8 25 9-36 8-32 (340)
481 3io3_A DEHA2D07832P; chaperone 65.1 5.2 0.00018 42.9 4.7 41 115-155 232-273 (348)
482 1q3t_A Cytidylate kinase; nucl 65.0 3.7 0.00013 41.1 3.4 27 7-36 15-41 (236)
483 4eaq_A DTMP kinase, thymidylat 64.3 3.2 0.00011 41.7 2.7 26 7-35 25-50 (229)
484 1ltq_A Polynucleotide kinase; 64.3 3.4 0.00012 42.9 3.1 22 9-33 3-24 (301)
485 1zcb_A G alpha I/13; GTP-bindi 64.1 3.6 0.00012 44.5 3.2 23 6-31 31-53 (362)
486 1nlf_A Regulatory protein REPA 64.0 3.3 0.00011 42.7 2.8 21 10-33 32-52 (279)
487 3b5x_A Lipid A export ATP-bind 63.9 3.2 0.00011 47.9 3.0 20 10-32 371-390 (582)
488 2dpy_A FLII, flagellum-specifi 63.8 3.5 0.00012 45.8 3.2 23 10-35 159-181 (438)
489 1qhl_A Protein (cell division 63.8 1.1 3.6E-05 45.3 -1.0 18 17-34 33-50 (227)
490 2ocp_A DGK, deoxyguanosine kin 63.7 3.5 0.00012 41.4 2.9 25 8-35 2-26 (241)
491 1svm_A Large T antigen; AAA+ f 63.4 3.7 0.00013 44.6 3.2 22 10-34 171-192 (377)
492 1lv7_A FTSH; alpha/beta domain 63.1 4.2 0.00014 41.2 3.4 24 9-35 46-69 (257)
493 3fgn_A Dethiobiotin synthetase 62.9 8.8 0.0003 39.1 5.7 66 88-153 125-197 (251)
494 3b60_A Lipid A export ATP-bind 62.9 3.2 0.00011 48.0 2.7 19 10-31 371-389 (582)
495 3bos_A Putative DNA replicatio 62.7 4.4 0.00015 40.0 3.4 23 9-34 53-75 (242)
496 2crv_A IF-2MT, translation ini 62.6 13 0.00045 33.1 5.9 69 369-451 15-85 (120)
497 1ihu_A Arsenical pump-driving 62.4 3.7 0.00013 47.5 3.1 43 113-155 489-532 (589)
498 3tqf_A HPR(Ser) kinase; transf 62.2 4 0.00014 39.2 2.8 21 11-34 19-39 (181)
499 2p65_A Hypothetical protein PF 61.7 3.7 0.00013 38.6 2.5 23 9-34 44-66 (187)
500 2qmh_A HPR kinase/phosphorylas 61.7 3.8 0.00013 40.3 2.6 22 10-34 36-57 (205)
No 1
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=100.00 E-value=4.5e-149 Score=1356.54 Aligned_cols=813 Identities=61% Similarity=1.018 Sum_probs=730.3
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|+| +||+|||||||+++|++.+|.+.....|.++++|++++|++||+||.++..++.|......+..+....
T Consensus 17 ~~~rnI~I---iG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~ 93 (842)
T 1n0u_A 17 TNVRNMSV---IAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKT 93 (842)
T ss_dssp GGEEEEEE---ECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCC
T ss_pred ccccEEEE---ECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccc
Confidence 45689999 999999999999999999998877555667899999999999999999999998862111111111223
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCHHH
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 165 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~ 165 (824)
+++++.+||||||||.||..++.++++.+|+||+|||+++|++.||..+|+++...++|+|+|+||||+...+++.++++
T Consensus 94 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~~e~~~~~~e 173 (842)
T 1n0u_A 94 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKED 173 (842)
T ss_dssp CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCCCHHH
T ss_pred cCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhccCHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcccCCC
Q 003378 166 AYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 245 (824)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~~~~ 245 (824)
+++.++++++++|..+..|.+...+++.+.|..++|+|+|+.+||+|++.+|+..|.++|+++...+.+++||++||+.+
T Consensus 174 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~~~~~ 253 (842)
T 1n0u_A 174 LYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPK 253 (842)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEEETT
T ss_pred HHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHHHHHHhccccccCC
Confidence 99999999999999998776555566678899999999999999999999999999999999999999999999999887
Q ss_pred CCceeecC--CCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhhhccchHH
Q 003378 246 TRKWTSRN--TGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSA 323 (824)
Q Consensus 246 ~~~~~~~~--~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~ 323 (824)
++++...+ .++.+.++.|++++++|+|+|++++++.|+++|++||+++|+.++.+++..++++|+++++++|+|++++
T Consensus 254 ~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~~~~~~pv~~~ 333 (842)
T 1n0u_A 254 TKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADA 333 (842)
T ss_dssp TTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHHHHHHSBHHHH
T ss_pred CCeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHHHhhccchHHH
Confidence 76676543 2334457899999999999999999999999999999999999999998878899999999999999999
Q ss_pred HHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEE
Q 003378 324 LLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRI 403 (824)
Q Consensus 324 LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v 403 (824)
|||+|++|+|||.+++.++...+|.|+.+++....++.|++++||+|+|||++.+++.|++++|+|||||+|++|+.|++
T Consensus 334 LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV~sG~l~~g~~v~v 413 (842)
T 1n0u_A 334 LLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRI 413 (842)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEE
T ss_pred HHHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEEEeeeecCCCEEEe
Confidence 99999999999999988888878877544443445678999999999999999999999779999999999999999999
Q ss_pred cCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccccccccceeeecCCCCCccccccccccCCceEEE
Q 003378 404 MGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSVSPVVRV 483 (824)
Q Consensus 404 ~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~~~~~~tgTl~~~~~~~~~~~~~~~~~~~Pv~~~ 483 (824)
++++++++..+++..+||++|++++|+++++|++|.|||||+|.||+++.++|||||+... +..++++.++..|++++
T Consensus 414 ~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~~t~Tl~~~~~--~~~l~~~~~~~~Pv~~~ 491 (842)
T 1n0u_A 414 QGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSET--AHNMKVMKFSVSPVVQV 491 (842)
T ss_dssp ECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEESCTTTCCSSEEEESCTT--CCCBCCCCCCCSCCEEE
T ss_pred ccccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEEccccceecceeecCCCC--ccccccCCCCCCceEEE
Confidence 9888776654434458999999999999999999999999999999998778889998776 77888998876799999
Q ss_pred EEEeCCCCCHhHHHHHHHHHHhcCCceEEEecCCCcEEEEecchHHHHHHHHHHHhhccCCeEEEEeCCeEeEEeccccc
Q 003378 484 AVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEK 563 (824)
Q Consensus 484 aVep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g~GElHLei~~~rL~~~~~~~v~v~~s~p~V~yrETi~~~ 563 (824)
+|+|+++.|++||.+||++|++|||+|+++.++|||++|+||||||||||++||+++| +++++.+++|+|+|||||.++
T Consensus 492 avep~~~~d~~kl~~~L~kL~~eDp~l~v~~~etge~il~g~GelHLei~~~rL~~~f-~~vev~~~~P~V~yrETi~~~ 570 (842)
T 1n0u_A 492 AVEVKNANDLPKLVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHLEICLQDLEHDH-AGVPLKISPPVVAYRETVESE 570 (842)
T ss_dssp EEEESSGGGHHHHHHHHHHHHHHCTTCEEEECTTSCEEEEESSHHHHHHHHHHHHHTT-SCSCEEEECCCCCCEEEESSC
T ss_pred EEEECCHHHHHHHHHHHHHHHHhCCcEEEEEcCCCCEEEEeccHHHHHHHHHHHHHHh-cCCceEecCcEEEEEEeeccc
Confidence 9999999999999999999999999999999999999999999999999999999999 699999999999999999999
Q ss_pred ccceeeeecCCCeeEEEEEEeeCchhhhhhhcCCcCCCCCChhhHHHhhhhhcCCchhccCeEEEeccCCCCCceEEecc
Q 003378 564 SCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMC 643 (824)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gp~~~g~n~~~~~~ 643 (824)
++..+..+++++|+++++++||||.++...++.|.+...++.+.+...+..+|+||.+.++++|+|||++.|+|+|+|.+
T Consensus 571 ~~~~~~~~~~~~~~~v~~~~ePl~~~~~~~~~~g~v~~~~~~~~~~~~l~~~~~~d~~~~~~iw~~~p~~~~~~~f~~~~ 650 (842)
T 1n0u_A 571 SSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVIDQT 650 (842)
T ss_dssp CSSCEEEECTTSSCEEEEEEEECCHHHHHHHHTTSSCTTSCHHHHHHHHHHTTCCCHHHHHTEEEESSTTTSSEEEEECC
T ss_pred cccceeeccCCcceEEEEEEEECcHHHhhHhhcCeecccccHHHHHHHHHHhcCcchhhhhceeeeccCCCCCcEEEecC
Confidence 88888888999999999999999999999999999887888888889999999999999999999999888899999999
Q ss_pred cCccchHHHHHHHHHHHHHHHHcCCccCCCcceeEEEEeeeeecccccccCCCChHHHHHHHHHHHHHhcCCccccc---
Q 003378 644 KGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEP--- 720 (824)
Q Consensus 644 ~g~~~~~~~~~~i~~Gf~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~a~~~a~~~LlEP--- 720 (824)
+|++++++++++|++||+||+++|||||+||+||+|+|.|+++|.|+++++++||++|+++||++|+++|+|+||||
T Consensus 651 ~g~~~~~~~~~~v~~G~~~a~~~G~L~g~pv~~v~v~l~dg~~h~d~~~~~~g~f~~a~~~a~~~a~~~a~p~LLEPi~~ 730 (842)
T 1n0u_A 651 KAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLADPKIQEPVFL 730 (842)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHSCTTTSCCBCSEEEEEEEEECCSSGGGSSHHHHHHHHHHHHHHHHHHSCEEEEEEEEE
T ss_pred CCccccHHHHHHHHHHHHHHHhcCCcCCceeeeEEEEEEEeeecCCccccchhHHHHHHHHHHHHHHHhCCCeEEeeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------cccchheccccccceeeeeeccCCCCceEEEEEechhhhcCchHHHhhhCCCceEeEeEecceeecCCCCCC
Q 003378 721 --------ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLE 792 (824)
Q Consensus 721 --------~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~~ 792 (824)
++|+||+||++|||+|+++++.+|+++++|+|++|++|||||+++|||+|||+|+|+|+|+||++||+||++
T Consensus 731 veI~vP~e~~G~V~~dL~~RRG~i~~~~~~~g~~~~~I~a~vP~aE~fgy~~~LRs~T~G~g~~~~~F~~y~~vp~~~~~ 810 (842)
T 1n0u_A 731 VEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTLGSDPLD 810 (842)
T ss_dssp EEEEECGGGHHHHHHHHHTTTCEEEEEEC---CCCEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEEEEEEEECCSCTTC
T ss_pred EEEEccHHHHHHHHHHHHhcCcEEeccccCCCCceEEEEEEcChHHhhhhHHHHHhhCCCCceEEEEeccceeCCCCccc
Confidence 999999999999999999998777678999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHhcCCCCCCCCcccccccC
Q 003378 793 PGSQASQLVLDIRKRKGLKEQMTPLSEYEDKL 824 (824)
Q Consensus 793 ~~~~a~~~i~~~r~rkGl~~~i~~~~~~~~~~ 824 (824)
.+|+|++||++|||||||++++|.+.+|+|+|
T Consensus 811 ~~~~a~~~~~~~R~rKGl~~~~p~~~~~~d~~ 842 (842)
T 1n0u_A 811 PTSKAGEIVLAARKRHGMKEEVPGWQEYYDKL 842 (842)
T ss_dssp TTSHHHHHHHHHHHHTTCCSSCCCGGGGCCCC
T ss_pred hhhHHHHHHHHHHHhCCCCCCCCCHHHhccCC
Confidence 99999999999999999999999999999997
No 2
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=3.2e-118 Score=1071.73 Aligned_cols=658 Identities=26% Similarity=0.353 Sum_probs=520.5
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccc--cCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG 83 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~--~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 83 (824)
.+-.|||| +||+|||||||+++||+++|.+.+. ..+..+++|++++||+|||||+++.+++.|...
T Consensus 11 ~~IRNi~I---iaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~--------- 78 (709)
T 4fn5_A 11 NRYRNIGI---CAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGS--------- 78 (709)
T ss_dssp GGEEEEEE---ECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCT---------
T ss_pred HHCeEEEE---EcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccC---------
Confidence 45679999 9999999999999999999988762 122257999999999999999999999999731
Q ss_pred ccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCH
Q 003378 84 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDG 163 (824)
Q Consensus 84 ~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~ 163 (824)
..++++|.|||||||||+||..|+.++|+++||||+||||++|+++||+.+|++|.++++|+|+|||||||+ ++++
T Consensus 79 ~~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~----~a~~ 154 (709)
T 4fn5_A 79 RGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQ----GANF 154 (709)
T ss_dssp TSCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSST----TCCH
T ss_pred cCCCCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEcccccc----CccH
Confidence 123457999999999999999999999999999999999999999999999999999999999999999999 8884
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcccC
Q 003378 164 EEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFD 243 (824)
Q Consensus 164 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~~ 243 (824)
. +.+++++..+.. .+...++|++++-..+++ +|+.++..++|++...
T Consensus 155 ~-------~~~~ei~~~l~~-----------~~~~~~~pi~~~~~~~g~--------------vd~~~~~~~~~~~~~~- 201 (709)
T 4fn5_A 155 L-------RVVEQIKKRLGH-----------TPVPVQLAIGAEENFVGQ--------------VDLIKMKAIYWNDDDK- 201 (709)
T ss_dssp H-------HHHHHHHHHHCS-----------CEEESEEEESSSTTCCEE--------------EETTTTEEEEEEC--C-
T ss_pred H-------HHHHHhhhhccc-----------ceeeeecccCchhccceE--------------EEEeeeeEEEeecccC-
Confidence 4 445555544431 222335666654222211 4455555677764321
Q ss_pred CCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-hhhccc--
Q 003378 244 PATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA-- 320 (824)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~-- 320 (824)
+..+... +.+..+.+.....+..+++.+++.|++++++|+++ ..++.+++. ..+.+... .+++|+
T Consensus 202 --g~~~~~~-----~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~--~~~~~~~~~---~~l~~~~~~~~~~pv~~ 269 (709)
T 4fn5_A 202 --GMTYREE-----EIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEE--GELSEAEIK---EGLRLRTLACEIVPAVC 269 (709)
T ss_dssp --CCEEEEC-----CCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHH--SCCCHHHHH---HHHHHHHHTTSCEEEEE
T ss_pred --Cceeccc-----cccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhc--CCccHHHHH---HHHHHhhhhceeeeeee
Confidence 1123322 23345566666667788999999999999999998 678888876 34444444 577885
Q ss_pred --------hHHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEEe
Q 003378 321 --------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFS 392 (824)
Q Consensus 321 --------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~s 392 (824)
++.|||+|++++|+|.+++..+... .+++.....+.||+++|++++|||+..+++.|. ++|+||||
T Consensus 270 gsa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~-----~~~~~~~~~~~~d~~~pl~~~VfK~~~d~~~G~-la~~RV~s 343 (709)
T 4fn5_A 270 GSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVS-----PDDETVEDERHADDNEPFSSLAFKIATDPFVGT-LTFARVYS 343 (709)
T ss_dssp CBTTTTBTHHHHHHHHHHHSCCTTSSCCEECBC-----CC-CCSCCEECSCTTSCCEEEEEECCCBTTTBC-CCEEEEEE
T ss_pred eecccCCchHHHHHHHHhhCCCCcccccccccC-----CccccccccccCCccCcceEEEEEeecccCCCc-eEEEeccC
Confidence 7899999999999999876544322 122333456789999999999999999999886 99999999
Q ss_pred eeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCCCccccc
Q 003378 393 GKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIR 471 (824)
Q Consensus 393 G~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~~~~~~~ 471 (824)
|+|++||+|+ |.+++++ +++++|+.++|++++++++|.|||||+|.|++++ .+| |||+.+. +..++
T Consensus 344 Gtl~~G~~v~----~~~~~~~-----~~v~~l~~~~g~~~~~v~~~~aGdIv~i~Gl~~~--~~gdTl~~~~~--~~~~~ 410 (709)
T 4fn5_A 344 GVLSSGDSVL----NSVKGKK-----ERVGRMVQMHANQREEIKEVRAGDIAALIGMKDV--TTGDTLCSIEK--PIILE 410 (709)
T ss_dssp SCEETTCBCB----CTTTCCC-----CBCCCEECCCSSCCCEESEECTTCEEEECSCSSC--CTTCEEECSSS--CCBCC
T ss_pred CCCCCCCEEE----EecCCcE-----EeecceeEeecceeeEeeeecCCCeeeecCCCcC--ccCCEecCCCc--cccCC
Confidence 9999999998 4445544 7999999999999999999999999999999986 677 9999877 77778
Q ss_pred cccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCceEEEec-CCCcEEEEecchHHHHHHHHHHHhhccCCeEEEEe
Q 003378 472 AMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKS 550 (824)
Q Consensus 472 ~~~~~~~Pv~~~aVep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~il~g~GElHLei~~~rL~~~~~~~v~v~~s 550 (824)
++.++ +|+++++|+|+++.|++||.+||++|+++||+|+++.+ +|||++|+||||||||||++||+++| +++++++
T Consensus 411 ~~~~~-~Pvv~vavep~~~~d~~kL~~~L~kL~~eDPsl~v~~~eetge~vi~g~GELHLei~l~rLr~e~--gvev~vs 487 (709)
T 4fn5_A 411 RMDFP-EPVISVAVEPKTKADQEKMGIALGKLAQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMKREF--GVEANIG 487 (709)
T ss_dssp ----C-CCSEEEEECBSSTTTHHHHHHHHHHHHHHCTTCEEEEETTTTEEEEEESCHHHHHHHHHHHHTTT--CCCBCCB
T ss_pred CCCCC-CcceEEEEecCCHHHhhhhHHHHHHHHHhCCeEEEEEecCCCcEEEEEECHHHHHHHHHHHHHHh--CceEEEe
Confidence 88886 99999999999999999999999999999999999985 99999999999999999999999999 9999999
Q ss_pred CCeEeEEecccccccc-e----eeeecCCCeeEEEEEEeeCchhhhhhhcCCcCCCCCChhhHHHhhhhhcCCchhccCe
Q 003378 551 DPVVSFRETVLEKSCR-T----VMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKK 625 (824)
Q Consensus 551 ~p~V~yrETi~~~~~~-~----~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (824)
+|+|+|||||++.+.. . ......+++..+|++++|+ .
T Consensus 488 ~P~V~yrETi~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~--------------------------------------~ 529 (709)
T 4fn5_A 488 KPQVAYRETITKDNVEIEGKFVRQSGGRGQFGHCWIRFSAA--------------------------------------D 529 (709)
T ss_dssp CCCCCCEEECCCCSEEEEEEEEEEETTEEEEEEEEEEEECC--------------------------------------C
T ss_pred eceEEEEEEEecCCceecceeeeccCCcCcceeEEEEEeec--------------------------------------c
Confidence 9999999999875421 0 1111222334455555543 3
Q ss_pred EEEeccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCcceeEEEEeeeeecc-cccccCCCChHHHHHH
Q 003378 626 IWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARR 704 (824)
Q Consensus 626 v~~~gp~~~g~n~~~~~~~g~~~~~~~~~~i~~Gf~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~ 704 (824)
+|.+||.. .++.|.|.+.|+.++++++++|++||+||+++||||||||+||+|+|.|+++|. |++..+ +..|+++
T Consensus 530 ~~e~g~~~-~~~~f~~~~~~~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~~s~~~~---f~~a~~~ 605 (709)
T 4fn5_A 530 VDEKGNIT-EGLVFENEVVGGVVPKEYIPAIQKGIEEQMKNGVVAGYPLIGLKATVFDGSYHDVDSNEMA---FKIAASM 605 (709)
T ss_dssp BC-CCCBC-CEEEEEECC-CCSSCGGGHHHHHHHHHHHHHHCSSSSCCBSEEEEEEEECCCCTTTBCHHH---HHHHHHH
T ss_pred ccccCCCc-CceEEecccccccCCHHHHHHHHHHHHHHHhcCcccCCceeeeEEEEEEccccCCCCChHH---HHHHHHH
Confidence 44455542 358999999999999999999999999999999999999999999999999998 444443 3468999
Q ss_pred HHHHHHHhcCCccccc-----------cccchheccccccceeeeeeccCCCCceEEEEEechhhhcCchHHHhhhCCCc
Q 003378 705 VIYASQLTAKPRLLEP-----------ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQ 773 (824)
Q Consensus 705 a~~~a~~~a~~~LlEP-----------~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~ 773 (824)
||++|+++|+|+|||| ++|+||++|++|||+|++++..++ ..+|+|++|++|||||+++|||+|+|+
T Consensus 606 a~~~a~~~a~p~LlEPi~~veI~~p~~~~G~V~~~L~~RRG~i~~~~~~~~--~~~i~a~vPv~E~~gf~~~LRs~T~G~ 683 (709)
T 4fn5_A 606 ATKQLAQKGGGKVLEPIMKVEVVTPEDYMGDVMGDLNRRRGLIQGMEDTVS--GKVIRAEVPLGEMFGYATDVRSMSQGR 683 (709)
T ss_dssp HHHTHHHHSCCEEEEEEEEEEEEEETTTHHHHHHHHGGGTCEEEEEEECSS--EEEEEEEEESGGGTTHHHHHHHHTTTC
T ss_pred HHHHHHHHCCCEEECceEEEEEEECHHHHHHHHHHHHhcCCEEeceEecCC--CEEEEEEecHHHhhCHHHHHHhhCCCe
Confidence 9999999999999999 999999999999999999988764 678999999999999999999999999
Q ss_pred eEeEeEecceeecCCCC
Q 003378 774 AFPQCVFDHWDMMSSDP 790 (824)
Q Consensus 774 ~~~~~~f~~y~~v~~~~ 790 (824)
|+|+|+|+||++||+|+
T Consensus 684 a~~~~~F~~y~~vp~~~ 700 (709)
T 4fn5_A 684 ASYSMEFSKYAEAPSNI 700 (709)
T ss_dssp CEEECCEEEEEECCHHH
T ss_pred EEEEEEECCcccCCcCH
Confidence 99999999999999975
No 3
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=4.5e-110 Score=996.42 Aligned_cols=659 Identities=27% Similarity=0.348 Sum_probs=555.0
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccc---cCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE---VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYR 82 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~---~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~ 82 (824)
.+..+|+| +||+|||||||+++|++.+|.+... +.| .+++|+.+.|++||+|+.++..++.|...
T Consensus 8 ~~~~~I~I---iG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g-~~~~D~~~~E~~rgiTi~~~~~~~~~~~~-------- 75 (704)
T 2rdo_7 8 ARYRNIGI---SAHIDAGKTTTTERILFYTGVNHKIGEVHDG-AATMDWMEQEQERGITITSAATTAFWSGM-------- 75 (704)
T ss_pred ccccEEEE---ECCCCCCHHHHHHHHHHhcCCcccccccCCC-ceeecChhhHHhcCceeeeceEEEEECCc--------
Confidence 45689999 9999999999999999998877652 112 47899999999999999999999988610
Q ss_pred cccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCC
Q 003378 83 GERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVD 162 (824)
Q Consensus 83 ~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~ 162 (824)
..+++.+.+||||||||.||..++.++++.+|+||+|||+++|++.||..+|+++...++|+++|+||+|+. .++
T Consensus 76 -~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~----~~~ 150 (704)
T 2rdo_7 76 -AKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRM----GAN 150 (704)
T ss_pred -cccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcc----ccc
Confidence 012345899999999999999999999999999999999999999999999999999999999999999999 777
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccC--ccceeeehhhHHHHhhhhcCCChHHHHHHhhcCc
Q 003378 163 GEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAG--LHGWAFTLTNFAKMYASKFGVDESKMMERLWGEN 240 (824)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~--~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~ 240 (824)
+.++.+. ++..+.. .+...++|++.+ +.|+ +|+..+..++|.+.
T Consensus 151 ~~~~~~~-------l~~~l~~-----------~~~~~~~Pi~~~~~f~g~----------------~dl~~~~~~~~~~~ 196 (704)
T 2rdo_7 151 FLKVVNQ-------IKTRLGA-----------NPVPLQLAIGAEEHFTGV----------------VDLVKMKAINWNDA 196 (704)
T ss_pred HHHHHHH-------HHHHhCC-----------CceeEEccccccccccce----------------eehhhhhhhcccCc
Confidence 5544444 4433321 011113454433 2222 67778888888531
Q ss_pred ccCCCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-hhhcc
Q 003378 241 FFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLP 319 (824)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P 319 (824)
..+..+...+ .+..+.+++.+++++|+|.+++.|+++|++||++ ++++.+++. +.+++.++ ++|+|
T Consensus 197 ---~~g~~~~~~~-----~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~--~~l~~~~l~---~~l~~~~~~~~~~P 263 (704)
T 2rdo_7 197 ---DQGVTFEYED-----IPADMVELANEWHQNLIESAAEASEELMEKYLGG--EELTEAEIK---GALRQRVLNNEIIL 263 (704)
T ss_pred ---cCCcceEEec-----CCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcC--CCCCHHHHH---HHHHHHHHhCCeeE
Confidence 0122233222 2356788999999999999999999999999997 889999987 45666665 58999
Q ss_pred c----------hHHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEE
Q 003378 320 A----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGR 389 (824)
Q Consensus 320 ~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~R 389 (824)
+ ++.|||+|++++|+|.+++.++. +. +.++. ....+.|++++||+|+|||++.+++.|+ ++|+|
T Consensus 264 v~~gSa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~---~~-~~~~~-~~~~~~~~~~~p~~~~VfK~~~d~~~G~-~~~~R 337 (704)
T 2rdo_7 264 VTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAING---IL-DDGKD-TPAERHASDDEPFSALAFKIATDPFVGN-LTFFR 337 (704)
T ss_pred EEEeecccCccHHHHHHHHHHHCCChhhcccccc---cC-Ccccc-cccccccCCCCceEEEEEEEEEcCCCce-EEEEE
Confidence 7 69999999999999988765433 11 11111 1245678899999999999999999887 99999
Q ss_pred EEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCCCcc
Q 003378 390 VFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAH 468 (824)
Q Consensus 390 V~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~~~~ 468 (824)
||||+|++||.|++ .+.+++ ++|++|+.++|++++++++|.|||||+|.|++++ ++| |||+... +.
T Consensus 338 V~sG~l~~g~~v~~----~~~~~~-----~~v~~l~~~~g~~~~~v~~~~aGdIv~i~gl~~~--~~GdTl~~~~~--~~ 404 (704)
T 2rdo_7 338 VYSGVVNSGDTVLN----SVKAAR-----ERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDV--TTGDTLCDPDA--PI 404 (704)
T ss_pred EEeeeecCCCEEEe----CCCCcE-----EEeceEEEEeCCCceEcceeCCCCEEEEeCcccC--ccCCEEeCCCc--cc
Confidence 99999999999995 333433 7999999999999999999999999999999987 788 9998776 67
Q ss_pred ccccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCceEEEec-CCCcEEEEecchHHHHHHHHHHHhhccCCeEE
Q 003378 469 PIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEI 547 (824)
Q Consensus 469 ~~~~~~~~~~Pv~~~aVep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~il~g~GElHLei~~~rL~~~~~~~v~v 547 (824)
.++++.++ .|+++++|+|+++.|++||.+||++|++|||+|++..+ +|||++|+||||||||||++||+++| ++++
T Consensus 405 ~l~~~~~~-~Pv~~~ai~p~~~~d~~kl~~~L~~L~~eDp~l~v~~~~etge~il~g~GelhLei~~~rL~~~f--~v~v 481 (704)
T 2rdo_7 405 ILERMEFP-EPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREF--NVEA 481 (704)
T ss_pred ccCCCCCC-CceEEEEEEECChHHHHHHHHHHHHHHhhCCEEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHh--CceE
Confidence 88899886 89999999999999999999999999999999999997 89999999999999999999999999 9999
Q ss_pred EEeCCeEeEEecccccc-cceeeee----cCCCeeEEEEEEeeCchhhhhhhcCCcCCCCCChhhHHHhhhhhcCCchhc
Q 003378 548 IKSDPVVSFRETVLEKS-CRTVMSK----SPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDL 622 (824)
Q Consensus 548 ~~s~p~V~yrETi~~~~-~~~~~~~----~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (824)
.+++|+|+|||||.+++ +....++ ..++|.+++++++|+++
T Consensus 482 ~~~~p~V~yrEti~~~~~~~~~~~~kq~gg~~q~~~v~~~~ePl~~---------------------------------- 527 (704)
T 2rdo_7 482 NVGKPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEP---------------------------------- 527 (704)
T ss_pred EEeCCEEEEEEeeccccccceeeeccccCCCCeeEEEEEEEEECCC----------------------------------
Confidence 99999999999998776 4432222 35556778888888742
Q ss_pred cCeEEEeccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCcceeEEEEeeeeecc-cccccCCCChHHH
Q 003378 623 AKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPT 701 (824)
Q Consensus 623 ~~~v~~~gp~~~g~n~~~~~~~g~~~~~~~~~~i~~Gf~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a 701 (824)
||+ ..+|.|.|.+.|+.++++|+++|++||+||+++||||||||+||+|+|.|+++|. ||++. +|+.|
T Consensus 528 -------~~~-g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~ds~~~---~f~~a 596 (704)
T 2rdo_7 528 -------GSN-PKGYEFINDIKGGVIPGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSEL---AFKLA 596 (704)
T ss_pred -------CCC-CCCcEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEeccccCCCCcHH---HHHHH
Confidence 011 1248999999999999999999999999999999999999999999999999997 66654 57799
Q ss_pred HHHHHHHHHHhcCCccccc-----------cccchheccccccceeeeeeccCCCCceEEEEEechhhhcCchHHHhhhC
Q 003378 702 ARRVIYASQLTAKPRLLEP-----------ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAAT 770 (824)
Q Consensus 702 ~~~a~~~a~~~a~~~LlEP-----------~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T 770 (824)
+++||++|+++|+|+|||| ++|+||++|++|||+|++++..++ +++|+|++|++|||||+++|||+|
T Consensus 597 ~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~~--~~~i~a~vP~~e~~gy~~~Lrs~T 674 (704)
T 2rdo_7 597 ASIAFKEGFKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQESEVT--GVKIHAEVPLSEMFGYATQLRSLT 674 (704)
T ss_pred HHHHHHHHHHhcCCeeeeeEEEEEEEeCHHHHhHHHHHHHhCCceEeCceecCC--eEEEEEEecHHHHhhHHHHhHhhc
Confidence 9999999999999999999 999999999999999999998764 789999999999999999999999
Q ss_pred CCceEeEeEecceeecCCCCCCCchHHHHHHHH
Q 003378 771 SGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLD 803 (824)
Q Consensus 771 ~G~~~~~~~f~~y~~v~~~~~~~~~~a~~~i~~ 803 (824)
+|+|+|+|+|+||+++|+++ +++++++
T Consensus 675 ~G~~~~~~~f~~y~~~~~~~------~~~i~~~ 701 (704)
T 2rdo_7 675 KGRASYTMEFLKYDEAPSNV------AQAVIEA 701 (704)
T ss_pred CCceEEEEEeCcceECCccH------HHHHHHH
Confidence 99999999999999999997 8899876
No 4
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.1e-107 Score=975.27 Aligned_cols=650 Identities=25% Similarity=0.344 Sum_probs=524.9
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCccccc--CCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV--AGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG 83 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~--~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 83 (824)
.+..+|+| +||+|+|||||+++|++.++.+.... ....+++|+.+.|++||+|+.+....+.|.
T Consensus 8 ~~~~~I~I---vG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~----------- 73 (693)
T 2xex_A 8 EKTRNIGI---MAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE----------- 73 (693)
T ss_dssp TTEEEEEE---ECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET-----------
T ss_pred ccceEEEE---ECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC-----------
Confidence 56789999 99999999999999999888775410 112468999999999999999999988886
Q ss_pred ccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCH
Q 003378 84 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDG 163 (824)
Q Consensus 84 ~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~ 163 (824)
++.++|||||||.+|..++.++++.+|++|+|+|+++|++.++..+|+++...++|+++|+||+|+. +++.
T Consensus 74 -----~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~----~~~~ 144 (693)
T 2xex_A 74 -----GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKL----GANF 144 (693)
T ss_dssp -----TEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTST----TCCH
T ss_pred -----CeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcc----ccch
Confidence 7899999999999999999999999999999999999999999999999999999999999999999 7774
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeeccc--CccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcc
Q 003378 164 EEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSA--GLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENF 241 (824)
Q Consensus 164 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s--~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~ 241 (824)
.++ +++++..+.. .+....+|+++ ++.|+ +|......++|..
T Consensus 145 ~~~-------~~~l~~~l~~-----------~~~~~~ipisa~~~~~~l----------------~d~l~~~~~~~~~-- 188 (693)
T 2xex_A 145 EYS-------VSTLHDRLQA-----------NAAPIQLPIGAEDEFEAI----------------IDLVEMKCFKYTN-- 188 (693)
T ss_dssp HHH-------HHHHHHHHCC-----------CEEESEEEECCGGGCCEE----------------EETTTTEEEECCS--
T ss_pred HHH-------HHHHHHHhCC-----------CceeEEeecccCCCccee----------------eeeecceeEEecc--
Confidence 443 4444443321 11111344433 22222 2222222233320
Q ss_pred cCCCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-hhhccc
Q 003378 242 FDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA 320 (824)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~ 320 (824)
..+..+...+ .+..|.+.....+.++++.+++.|+++|++||++ .+++.+++. +.+.+.+. .+++|+
T Consensus 189 --~~~~~~~~~~-----~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~--~~~~~~~~~---~~l~~~~~~~~~~Pv 256 (693)
T 2xex_A 189 --DLGTEIEEIE-----IPEDHLDRAEEARASLIEAVAETSDELMEKYLGD--EEISVSELK---EAIRQATTNVEFYPV 256 (693)
T ss_dssp --SSSCSCEEEC-----CCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTT--CCCCHHHHH---HHHHHHHHTTSCEEE
T ss_pred --CCCceeEEec-----CCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcC--CCCCHHHHH---HHHHHHHHhCCeeeE
Confidence 1111122221 2356777788889999999999999999999996 789998886 35555555 578897
Q ss_pred ----------hHHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEE
Q 003378 321 ----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRV 390 (824)
Q Consensus 321 ----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV 390 (824)
++.|||+|++|+|+|.+++.++. + ++.++ .....+.|++++||+|+|||++.+++.|+ ++|+||
T Consensus 257 ~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~---~-~~~~~-~~~~~~~~~~~~p~~a~VfK~~~d~~~g~-~~~~RV 330 (693)
T 2xex_A 257 LCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIG---H-RASNP-EEEVIAKADDSAEFAALAFKVMTDPYVGK-LTFFRV 330 (693)
T ss_dssp EECBTTTTBSHHHHHHHHHHHSCCGGGSCCEEE---E-ETTEE-EEEEEECSCTTSCCEEEEEEEEEETTTEE-EEEEEE
T ss_pred EEeecccCcCHHHHHHHHHHHCCCchhcccccc---c-CCCcc-ccceeecCCCCCceEEEEEEeeecCCCce-EEEEEE
Confidence 68999999999999988765432 1 11111 12346688999999999999999999887 999999
Q ss_pred EeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCCCccc
Q 003378 391 FSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHP 469 (824)
Q Consensus 391 ~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~~~~~ 469 (824)
|||+|++||.|++ .+.+++ +||++|+.++|++++++++|.|||||+|.|++++ ++| |||+... +..
T Consensus 331 ~sG~l~~g~~v~~----~~~~~~-----~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~GdTl~~~~~--~~~ 397 (693)
T 2xex_A 331 YSGTMTSGSYVKN----STKGKR-----ERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDT--GTGDTLCGEKN--DII 397 (693)
T ss_dssp EESEEETTEEEEE----TTTTEE-----EEECCEEEECSSCEEECSEEETTCEEEEESCSSC--CTTCEEEETTC--CEE
T ss_pred EeeeEecCCEEEe----cCCCce-----EEeceEEEEeCCCceEccccCcCCEEEEeCcccC--ccCCEEecCCC--ccc
Confidence 9999999999995 333433 8999999999999999999999999999999987 678 9999776 678
Q ss_pred cccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCceEEEec-CCCcEEEEecchHHHHHHHHHHHhhccCCeEEE
Q 003378 470 IRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEII 548 (824)
Q Consensus 470 ~~~~~~~~~Pv~~~aVep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~il~g~GElHLei~~~rL~~~~~~~v~v~ 548 (824)
++++.++ .|+++++|+|+++.|++||.+||++|++|||+|+++.+ +|||++|+||||||||||++||+++| ++++.
T Consensus 398 ~~~~~~~-~Pv~~~av~p~~~~d~~kl~~~L~~l~~eDp~l~~~~~~et~e~il~g~Gelhlei~~~rL~~~~--~v~v~ 474 (693)
T 2xex_A 398 LESMEFP-EPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEF--NVECN 474 (693)
T ss_dssp CCCCSSC-SCSEEEEEEESSHHHHHHHHHHHHHHHHHCTTCEEEC---CCCEEEEESSHHHHHHHHHHHHHHS--CCCEE
T ss_pred cCCcCCC-CceEEEEEEeCCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHh--CceEE
Confidence 8899987 89999999999999999999999999999999999997 89999999999999999999999999 99999
Q ss_pred EeCCeEeEEecccccccceeeee----cCCCeeEEEEEEeeCchhhhhhhcCCcCCCCCChhhHHHhhhhhcCCchhccC
Q 003378 549 KSDPVVSFRETVLEKSCRTVMSK----SPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAK 624 (824)
Q Consensus 549 ~s~p~V~yrETi~~~~~~~~~~~----~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (824)
+++|+|+|||||.++++....++ ..+++.+++++++|++.+
T Consensus 475 ~~~p~V~yrEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~g----------------------------------- 519 (693)
T 2xex_A 475 VGAPMVSYRETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETG----------------------------------- 519 (693)
T ss_dssp ECCCEECCEEEESSCEEEEEEEEECTTSSCEEEEEEEEEEECCTT-----------------------------------
T ss_pred EeCCeEEEEEEeccccceeEeeccccCCCCceEEEEEEEEECCCC-----------------------------------
Confidence 99999999999998765432222 234445667777776531
Q ss_pred eEEEeccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCcceeEEEEeeeeecc-cccccCCCChHHHHH
Q 003378 625 KIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTAR 703 (824)
Q Consensus 625 ~v~~~gp~~~g~n~~~~~~~g~~~~~~~~~~i~~Gf~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~ 703 (824)
.+|.|.|.+.|+.++++|+++|++||+||+++|||||+||+||+|+|.|+++|. ||++. +|+.|++
T Consensus 520 ----------~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~vds~~~---~f~~a~~ 586 (693)
T 2xex_A 520 ----------AGFEFENAIVGGVVPREYIPSVEAGLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEM---AFKIAAS 586 (693)
T ss_dssp ----------CCCEEEECCCTTSSCGGGHHHHHHHHHHHHHTCSSSSCCBCSEEEEEEEEECCTTTCCHH---HHHHHHH
T ss_pred ----------CCCEEEecCCCCcCCHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEeccccCCCCCHH---HHHHHHH
Confidence 248999999999999999999999999999999999999999999999999998 77665 4779999
Q ss_pred HHHHHHHHhcCCccccc-----------cccchheccccccceeeeeeccCCCCceEEEEEechhhhcCchHHHhhhCCC
Q 003378 704 RVIYASQLTAKPRLLEP-----------ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSG 772 (824)
Q Consensus 704 ~a~~~a~~~a~~~LlEP-----------~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G 772 (824)
+||++|+++|+|+|||| ++|+||++|++|||+|++++..++ +++|+|++|++|||||+++|||+|+|
T Consensus 587 ~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~~--~~~i~a~vP~~e~~gy~~~Lrs~T~G 664 (693)
T 2xex_A 587 LALKEAAKKCDPVILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGN--AQVVNAYVPLSEMFGYATSLRSNTQG 664 (693)
T ss_dssp HHHHHHHTTSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETT--EEEEEEEEEGGGCTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCEEEeeeEEEEEEEcHHHHHHHHHHHHhCCcEeecccccCC--eEEEEEEeCHHHHHhHHHHhHHhcCC
Confidence 99999999999999999 999999999999999999998764 79999999999999999999999999
Q ss_pred ceEeEeEecceeecCCCCCCCchHHHHHHHHH
Q 003378 773 QAFPQCVFDHWDMMSSDPLEPGSQASQLVLDI 804 (824)
Q Consensus 773 ~~~~~~~f~~y~~v~~~~~~~~~~a~~~i~~~ 804 (824)
+|+|+|+|+||+++|+++ +++++++.
T Consensus 665 ~~~~~~~f~~y~~~~~~~------~~~i~~~~ 690 (693)
T 2xex_A 665 RGTYTMYFDHYAEVPKSI------AEDIIKKN 690 (693)
T ss_dssp CCEEEEEEEEEEECCHHH------HHHHHHHH
T ss_pred ceEEEEEeCcceECChhH------HHHHHHHh
Confidence 999999999999999986 89998773
No 5
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=9.3e-108 Score=975.61 Aligned_cols=645 Identities=27% Similarity=0.381 Sum_probs=481.5
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccc--cCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG 83 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~--~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 83 (824)
.+..+|+| +||+|||||||+++|++.+|.+.+. ..+..+++|+.+.|++||+|+.+...++.|.
T Consensus 10 ~~~~~I~I---vG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~----------- 75 (691)
T 1dar_A 10 KRLRNIGI---AAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK----------- 75 (691)
T ss_dssp GGEEEEEE---EECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET-----------
T ss_pred ccccEEEE---ECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC-----------
Confidence 56789999 9999999999999999988877542 0112468999999999999999999998886
Q ss_pred ccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCH
Q 003378 84 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDG 163 (824)
Q Consensus 84 ~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~ 163 (824)
++.++|||||||.+|..++.++++.+|++|+|||+++|++.+|..+|+++...++|+++|+||+|+. .+++
T Consensus 76 -----~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~----~~~~ 146 (691)
T 1dar_A 76 -----DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKT----GADL 146 (691)
T ss_dssp -----TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTST----TCCH
T ss_pred -----CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcc----cCCH
Confidence 7899999999999999999999999999999999999999999999999999999999999999999 7774
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeec--ccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcc
Q 003378 164 EEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAF--SAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENF 241 (824)
Q Consensus 164 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~--~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~ 241 (824)
.+ ++++++..+.. .+...++|+ ++++.||...+. ...++|
T Consensus 147 ~~-------~~~~l~~~l~~-----------~~~~~~~Pi~~~~~~~g~~d~~~----------------~~~~~~---- 188 (691)
T 1dar_A 147 WL-------VIRTMQERLGA-----------RPVVMQLPIGREDTFSGIIDVLR----------------MKAYTY---- 188 (691)
T ss_dssp HH-------HHHHHHHTTCC-----------CEEECEEEESCGGGCCEEEETTT----------------TEEEEE----
T ss_pred HH-------HHHHHHHHhCC-----------CccceeccccCCCcccchhhhhc----------------ceeeEe----
Confidence 44 44444444321 111113333 455666644332 222333
Q ss_pred cC-CCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-hhhcc
Q 003378 242 FD-PATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLP 319 (824)
Q Consensus 242 ~~-~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P 319 (824)
+ ..+..+...+ .+..|.++..+++.++++.+++.|+++|++||++ .+++.+++. ..+.+.+. .+++|
T Consensus 189 -~~~~g~~~~~~~-----~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~--~~~~~~~~~---~~~~~~~~~~~~~P 257 (691)
T 1dar_A 189 -GNDLGTDIREIP-----IPEEYLDQAREYHEKLVEVAADFDENIMLKYLEG--EEPTEEELV---AAIRKGTIDLKITP 257 (691)
T ss_dssp -CSTTSCCEEEEC-----CCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHT--CCCCHHHHH---HHHHHHHHTTSCEE
T ss_pred -ccCCCceeEEec-----CCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCC--CCCCHHHHH---HHHHHHHHhCcEeE
Confidence 2 1111222222 2356888888999999999999999999999996 889999886 34555555 57889
Q ss_pred c----------hHHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEE
Q 003378 320 A----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGR 389 (824)
Q Consensus 320 ~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~R 389 (824)
+ ++.|||+|++++|+|.+++.++... + +. ....+.|++++|++|+|||+..+++.|+ ++|+|
T Consensus 258 v~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~----~-~~--~~~~~~~~~~~p~~~~Vfk~~~d~~~G~-~~~~R 329 (691)
T 1dar_A 258 VFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTT----P-EG--EVVEIHPDPNGPLAALAFKIMADPYVGR-LTFIR 329 (691)
T ss_dssp EEECBGGGTBSHHHHHHHHHHHSCCTTTSCCEEEEC----S-SS--CEEEECCCTTSCCEEEEEEEEEETTTEE-EEEEE
T ss_pred EEEeecccCcCHHHHHHHHHHhCCChhhcccccccC----C-Cc--cccccccCCCCCcEEEEEEEEEcCCCCc-EEEEE
Confidence 7 6999999999999998876544321 1 11 1245678999999999999999999887 99999
Q ss_pred EEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCCCc-
Q 003378 390 VFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDA- 467 (824)
Q Consensus 390 V~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~~~- 467 (824)
||||+|++||.|++. +.+.+ ++|++|+.++|++++++++|.|||||+|.|++++ ++| |||+... +
T Consensus 330 V~sG~l~~g~~v~~~----~~~~~-----~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~Gdtl~~~~~--~~ 396 (691)
T 1dar_A 330 VYSGTLTSGSYVYNT----TKGRK-----ERVARLLRMHANHREEVEELKAGDLGAVVGLKET--ITGDTLVGEDA--PR 396 (691)
T ss_dssp EEESEEESSCEEEET----TTTEE-----EECCEEEEECSSCEEEESEEETTCEEEEECCSSC--CTTCEEEETTC--CC
T ss_pred EeeeeEecCCEEEec----CCCcE-----EEEceEEEEeCCCceEcceecCCCEEEEeCcccC--ccCCEEecCCC--cc
Confidence 999999999999953 33333 7999999999999999999999999999999987 678 9998776 5
Q ss_pred cccccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCceEEEec-CCCcEEEEecchHHHHHHHHHHHhhccCCeE
Q 003378 468 HPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAE 546 (824)
Q Consensus 468 ~~~~~~~~~~~Pv~~~aVep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~il~g~GElHLei~~~rL~~~~~~~v~ 546 (824)
..++++.++ .|+++++|+|+++.|++||.+||++|++|||+|+++.+ +|||++|+||||||||||++||+++| +++
T Consensus 397 ~~l~~~~~~-~P~~~~ai~p~~~~d~~kl~~~L~~l~~eDp~l~v~~~~et~e~i~~g~Gelhlei~~~rL~~~~--~v~ 473 (691)
T 1dar_A 397 VILESIEVP-EPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREF--KVD 473 (691)
T ss_dssp CBCC---------------------------------CCCCSCEEEC-----CEEEEESCCC---------CCCE--EEB
T ss_pred cccCCCCCC-CceEEEEEEECCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHhh--Cce
Confidence 788899887 89999999999999999999999999999999999997 89999999999999999999999999 999
Q ss_pred EEEeCCeEeEEecccccccceeeee----cCCCeeEEEEEEeeCchhhhhhhcCCcCCCCCChhhHHHhhhhhcCCchhc
Q 003378 547 IIKSDPVVSFRETVLEKSCRTVMSK----SPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDL 622 (824)
Q Consensus 547 v~~s~p~V~yrETi~~~~~~~~~~~----~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (824)
+.+++|+|+|||||.++++....++ ..+++.+++++++|++.+
T Consensus 474 v~~~~p~V~yrEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~g--------------------------------- 520 (691)
T 1dar_A 474 ANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRG--------------------------------- 520 (691)
T ss_dssp TTTBCCCBCCEEECSSCEEEEEEEEECCSSSCEEEEEEEEEEECCTT---------------------------------
T ss_pred EEEeCCeEEEEEeeccceeeeeeeccccCCCCceEEEEEEEEECCCC---------------------------------
Confidence 9999999999999998765432222 234455677777776531
Q ss_pred cCeEEEeccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCcceeEEEEeeeeecc-cccccCCCChHHH
Q 003378 623 AKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPT 701 (824)
Q Consensus 623 ~~~v~~~gp~~~g~n~~~~~~~g~~~~~~~~~~i~~Gf~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a 701 (824)
.+|.|.|.+.|+.++++|+++|++||+||+++|||||+||+||+|+|.|+++|. ||++. +|+.|
T Consensus 521 ------------~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~vds~~~---~f~~a 585 (691)
T 1dar_A 521 ------------SGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEM---AFKIA 585 (691)
T ss_dssp ------------CCEEEEECCCTTSSCTTTHHHHHHHHHHHTTSCTTTSCCBCSEEEEEEEECCCTTTBCHH---HHHHH
T ss_pred ------------CCCEEeecccCCcCcHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEeeeccccCcchH---HHHHH
Confidence 248899999999999999999999999999999999999999999999999998 77765 47799
Q ss_pred HHHHHHHHHHhcCCccccc-----------cccchheccccccceeeeeeccCCCCceEEEEEechhhhcCchHHHhhhC
Q 003378 702 ARRVIYASQLTAKPRLLEP-----------ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAAT 770 (824)
Q Consensus 702 ~~~a~~~a~~~a~~~LlEP-----------~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T 770 (824)
+++||++|+++|+|+|||| ++|+||++|++|||+|++++..++ +++|+|++|++|||||+++|||+|
T Consensus 586 ~~~a~~~a~~~a~~~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~~--~~~i~a~vP~~e~~gy~~~Lrs~T 663 (691)
T 1dar_A 586 GSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGN--AQVIRAFVPLAEMFGYATDLRSKT 663 (691)
T ss_dssp HHHHHHHHHHTSCCEEEEEEEEEEEEECTTTTTHHHHHHHHTTCCEEEEEEETT--EEEEEEEEETTTSSSHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCEEeeceEEEEEEEcHHHHhHHHHHHHHCCceeecceecCC--eEEEEEEecHHHHhhHHHHHHHhc
Confidence 9999999999999999999 999999999999999999998764 799999999999999999999999
Q ss_pred CCceEeEeEecceeecCCCCCCCchHHHHHHH
Q 003378 771 SGQAFPQCVFDHWDMMSSDPLEPGSQASQLVL 802 (824)
Q Consensus 771 ~G~~~~~~~f~~y~~v~~~~~~~~~~a~~~i~ 802 (824)
+|+|+|+|+|+||+++|+++ ++++++
T Consensus 664 ~G~~~~~~~f~~y~~~~~~~------~~~i~~ 689 (691)
T 1dar_A 664 QGRGSFVMFFDHYQEVPKQV------QEKLIK 689 (691)
T ss_dssp TTCCEEEEEEEEEEECCHHH------HHHHHC
T ss_pred CCceEEEEEeCcceECChhH------HHHHHh
Confidence 99999999999999999986 888764
No 6
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=9.6e-111 Score=993.89 Aligned_cols=587 Identities=20% Similarity=0.263 Sum_probs=491.7
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCc----eeecCChhhHhHhccceeeceEEEEEeechhhhhccccc
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGD----VRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~----~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (824)
.|||| +||+|||||||+++||+++|.+++ .|+ .+++|++++||+|||||+++.+++.|+
T Consensus 3 RNi~I---iaHvD~GKTTL~e~LL~~~G~i~~--~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~------------ 65 (638)
T 3j25_A 3 INIGV---LAHVDAGKTTLTESLLYNSGAITE--LGSVDKGTTRTDNTLLERQRGITIQTGITSFQWE------------ 65 (638)
T ss_dssp CCCEE---ECCSTTSSHHHHHHHHHHHTCCSS--CSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCS------------
T ss_pred eEEEE---EcCCCCCHHHHHHHHHHHcCCCcc--ccccccCCcccCCcHHHHhCCCcEEeeeEEEEEC------------
Confidence 58999 999999999999999999999987 333 578999999999999999999999996
Q ss_pred cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCHH
Q 003378 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGE 164 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~ 164 (824)
+++|||||||||+||..|+.++++++|+||+||||++|+++||+.+|++|.++++|+|+|||||||+ ++++.
T Consensus 66 ----~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~----~a~~~ 137 (638)
T 3j25_A 66 ----NTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQN----GIDLS 137 (638)
T ss_dssp ----SCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSS----SCCSH
T ss_pred ----CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccc----cCCHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 88855
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcccCC
Q 003378 165 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 244 (824)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~~~ 244 (824)
.+.+.+ ...+.. ++.+... ++ +|.+....
T Consensus 138 ~~~~~i-------~~~l~~----------------~~~~~~~--------------------~~-------~~~~~~~~- 166 (638)
T 3j25_A 138 TVYQDI-------KEKLSA----------------EIVIKQK--------------------VE-------LYPNVCVT- 166 (638)
T ss_dssp HHHHHH-------HHTTCC----------------CCCCCCC--------------------CC-------SCGGGCCC-
T ss_pred HHHHHH-------HHHhCC----------------Cccccce--------------------eE-------eecccccc-
Confidence 544443 333321 0111000 00 01100000
Q ss_pred CCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-hhhccc---
Q 003378 245 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA--- 320 (824)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~--- 320 (824)
.+. ..+..+.+++.|++++++|+++ ..++..++.. .+...+. ..++|+
T Consensus 167 ---~~~--------------------~~~~~e~~~e~~d~l~e~~~~~--~~~~~~~~~~---~~~~~~~~~~~~Pv~~g 218 (638)
T 3j25_A 167 ---NFT--------------------ESEQWDTVIEGNDDLLEKYMSG--KSLEALELEQ---EESIRFQNCSLFPLYHG 218 (638)
T ss_dssp ---CCC--------------------CHHHHHHHHHHHCHHHHHHHHH--CCCCSHHHHH---HHHHHHHHTSCCCCCCC
T ss_pred ---ccc--------------------hhhhhhhhhcccHHHHhhhccC--CccchHHHHH---HHhhhhccccccccccc
Confidence 000 0244677788889999999998 6777777753 2333333 477886
Q ss_pred -------hHHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEEee
Q 003378 321 -------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSG 393 (824)
Q Consensus 321 -------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG 393 (824)
+++|||+|++++|+|.+ ++++|++++|||+..+++.|+ ++|+|||||
T Consensus 219 Sa~~~~Gv~~LLd~i~~~~p~p~~-------------------------~~~~~~~~~Vfk~~~d~~~G~-la~~RV~sG 272 (638)
T 3j25_A 219 SAKSNIGIDNLIEVITNKFYSSTH-------------------------RGPSELCGNVFKIEYTKKRQR-LAYIRLYSG 272 (638)
T ss_dssp CSTTCCSHHHHHHHHHHSCCCSGG-------------------------GSCCCCCBEEBCCCCCSTTCC-CCBCCBSSB
T ss_pred ccccCCCchhHhhhhhccccCccc-------------------------chhhhhcceeeeeeeeccCce-EEEEEEEcC
Confidence 79999999999999953 235789999999999999887 999999999
Q ss_pred eecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCCCcccccc
Q 003378 394 KVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRA 472 (824)
Q Consensus 394 ~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~~~~~~~~ 472 (824)
+|++||.|++.+ . ++ +++.+++.++|.+++++++|.|||||+|.|. .. ++| |+++... .+.+..
T Consensus 273 ~l~~g~~v~~~~----~-~~-----~~v~~l~~~~g~~~~~v~~a~aGdIv~i~g~-~~--~~~~tl~d~~~--~~~~~~ 337 (638)
T 3j25_A 273 VLHLRDSVRVSE----K-EK-----IKVTEMYTSINGELCKIDRAYSGEIVILQNE-FL--KLNSVLGDTKL--LPQRKK 337 (638)
T ss_dssp CCCSCCCSSSCC----C-CC-----SSBCCCCSSCCCCBSCCCTTBCCCCSCCCSS-SC--SSEECSSSSSS--GGGCSC
T ss_pred cccCCCcccccc----C-cc-----eeEEeeecccccccccccccccceEEEEecc-cc--ccCceecCCCC--cccccC
Confidence 999999998532 1 22 6999999999999999999999999999883 22 566 7877665 556667
Q ss_pred ccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCceEEEec-CCCcEEEEecchHHHHHHHHHHHhhccCCeEEEEeC
Q 003378 473 MKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSD 551 (824)
Q Consensus 473 ~~~~~~Pv~~~aVep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~il~g~GElHLei~~~rL~~~~~~~v~v~~s~ 551 (824)
+.++ +|+++++|+|+++.|++||.++|++|++|||+++++.+ ++||++|+|||||||||+++||+++| |+++.+++
T Consensus 338 i~~p-~Pv~~~aiep~~~~d~~kL~~aL~kL~~eDPsl~v~~~~et~e~il~g~GeLHLei~~~rL~~ef--gvev~~~~ 414 (638)
T 3j25_A 338 IENP-HPLLQTTVEPSKPEQREMLLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKY--HVEIELKE 414 (638)
T ss_dssp CCCC-CCCCCCEEECCSHHHHHHHHHHHHHHHHTCTTCCCCCCSSSSCCCCCCSSHHHHHHHHHHHTTTT--CCCCEEEC
T ss_pred ccCC-CccceeeeccCChHHHHHHHHHHHHHhhcCCeeEEEecCCCceEEEccccHHHHHHHHHHHHHHh--CCcEEEeC
Confidence 7765 99999999999999999999999999999999999987 89999999999999999999999999 99999999
Q ss_pred CeEeEEecccccccceeee--ecCCCeeEEEEEEeeCchhhhhhhcCCcCCCCCChhhHHHhhhhhcCCchhccCeEEEe
Q 003378 552 PVVSFRETVLEKSCRTVMS--KSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCF 629 (824)
Q Consensus 552 p~V~yrETi~~~~~~~~~~--~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 629 (824)
|+|+|||||.++++..+.. ...+.+..+++.++|++..
T Consensus 415 P~V~yrEti~~~~~~~~~~~~~~~~~~~~v~~~~eP~~~~---------------------------------------- 454 (638)
T 3j25_A 415 PTVIYMERPLKNAEYTIHIEVPPNPFWASIGLSVSPLPLG---------------------------------------- 454 (638)
T ss_dssp CCCCCCBCCCSCCEECCCCCSSSCCCCCCCCEECCCCCSS----------------------------------------
T ss_pred CceeEEEEecccceEEEEEecCCCCceEEEEEEEecccCC----------------------------------------
Confidence 9999999999876543221 1222233444555544321
Q ss_pred ccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCcceeEEEEeeeeecc-cccccCCCChHHHHHHHHHH
Q 003378 630 GPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYA 708 (824)
Q Consensus 630 gp~~~g~n~~~~~~~g~~~~~~~~~~i~~Gf~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~~ 708 (824)
.++.|.+.+.|+.++++|+++|++||+||+++| |||+||+||+|+|.|+++|. ||++ .+|+.|+++||++
T Consensus 455 -----~g~~f~~~~~~~~~~~~~~~av~~g~~~~~~~G-l~g~pv~~v~v~l~dg~~h~~~s~~---~~f~~a~~~a~~~ 525 (638)
T 3j25_A 455 -----SGMQYESSVSLGYLNQSFQNAVMEGIRYGCEQG-LYGWNVTDCKICFKYGLYYSPVSTP---ADFRMLAPIVLEQ 525 (638)
T ss_dssp -----CCCCCCCCCCSSSTTHHHHHHHHHHHHHHHHSS-SSCCCCCSCCCCCCCCCCSSCSCCS---HHHHHHHHHHHHH
T ss_pred -----CCcEEEeeeecccchhhhhhHHhhhHHHHHhcc-ccCCcccceEEEEEECcccCCCCCH---HHHHHHHHHHHHH
Confidence 246777888899999999999999999999999 99999999999999999997 5444 4577999999999
Q ss_pred HHHhcCCccccc-----------cccchheccccccceeeeeeccCCCCceEEEEEechhhhcCchHHHhhhCCCceEeE
Q 003378 709 SQLTAKPRLLEP-----------ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQ 777 (824)
Q Consensus 709 a~~~a~~~LlEP-----------~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~ 777 (824)
|+++|+|+|||| ++|+||++|++|||+|++++..+ ++++|+|++|++|||||+++|||+|+|+|+|+
T Consensus 526 a~~~a~p~LLEPi~~veI~vP~~~~G~V~~~L~~RRG~i~~~~~~~--~~~~i~a~vP~~e~~gy~~~Lrs~T~G~a~~~ 603 (638)
T 3j25_A 526 VLKKAGTELLEPYLSFKIYAPQEYLSRAYNDAPKYCANIVDTQLKN--NEVILSGEIPARCIQEYRSDLTFFTNGRSVCL 603 (638)
T ss_dssp HHHHHCCBCCCCCTTCEEEEETTTHHHHHHHHHHTTCCCCCCCCCT--TEEEEECCCSSCCHHHHHHHHHHTTTTCCEEE
T ss_pred HHHHCCCEEEcCcEEEEEEECHHHHHHHHHHHHhCCcEEeCeEecC--CeEEEEEEECHHHhhCHHHHHHhhCCCcEEEE
Confidence 999999999999 99999999999999999998866 47899999999999999999999999999999
Q ss_pred eEecceeecCCCCCCCc
Q 003378 778 CVFDHWDMMSSDPLEPG 794 (824)
Q Consensus 778 ~~f~~y~~v~~~~~~~~ 794 (824)
|+|+||++||+||++.+
T Consensus 604 ~~f~~y~~vpgdp~~~~ 620 (638)
T 3j25_A 604 TELKGYHVTTGEPVCQP 620 (638)
T ss_dssp CCCCCCCCCCSCCSCCC
T ss_pred EEECceEECCCCccccc
Confidence 99999999999999854
No 7
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=100.00 E-value=2.9e-100 Score=908.21 Aligned_cols=627 Identities=23% Similarity=0.312 Sum_probs=524.1
Q ss_pred CCCCC-ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCc----eeecCChhhHhHhccceeeceEEEEEeech
Q 003378 1 MSSYC-FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGD----VRMTDTRQDEAERGITIKSTGISLYYEMTD 75 (824)
Q Consensus 1 ~~~~~-~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~----~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~ 75 (824)
|.+.. .+..+|+| +||+|||||||+++|++..+.+.. .|+ .+++|+.+.|++||+|+......+.|.
T Consensus 1 ~~s~~~~~~~~i~I---iG~~gaGKTTLl~~L~~~~~~~~~--~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--- 72 (665)
T 2dy1_A 1 MGTEGGAMIRTVAL---VGHAGSGKTTLTEALLYKTGAKER--RGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--- 72 (665)
T ss_dssp -----CCCEEEEEE---EESTTSSHHHHHHHHHHHTTSSSS--CCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET---
T ss_pred CCCCccCCCcEEEE---ECCCCChHHHHHHHHHHhcCCCCc--cceecCCcccccCCHHHHhcCCeEEecceEEeeC---
Confidence 44433 45678999 999999999999999988876544 232 467899999999999999998888875
Q ss_pred hhhhccccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 76 AALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
++.+||||||||.+|..++.++++.+|++++|+|+.+|+..||+.+|+++...++|+|+|+||+|+.
T Consensus 73 -------------~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 73 -------------GHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp -------------TEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred -------------CEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence 7899999999999999999999999999999999999999999999999999999999999999986
Q ss_pred hhcccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecc--cCccceeeehhhHHHHhhhhcCCChHHHH
Q 003378 156 FLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFS--AGLHGWAFTLTNFAKMYASKFGVDESKMM 233 (824)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~--s~~~g~~~~~~~fa~~~~~~~~id~~~l~ 233 (824)
.+.+++.+.++ ..+.. ..|. .+|++ +++.|| +|.....
T Consensus 140 -----~~~~~~~~~l~-------~~l~~----------~~~~--~~Pi~~~~~~~g~----------------~d~~~~~ 179 (665)
T 2dy1_A 140 -----GDYYALLEDLR-------STLGP----------ILPI--DLPLYEGGKWVGL----------------IDVFHGK 179 (665)
T ss_dssp -----CCHHHHHHHHH-------HHHCS----------EEEC--EEEEEETTEEEEE----------------EETTTTE
T ss_pred -----hhHHHHHHHHH-------HHhCC----------cceE--EeeecCCCcccch----------------hhhhhhh
Confidence 23333333333 22210 0111 33443 333343 2233322
Q ss_pred HHhhcCcccCCCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHH
Q 003378 234 ERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRV 313 (824)
Q Consensus 234 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i 313 (824)
.|+| +++ .+...+ .+..|.++..++++++++.+++.|++++++|+++ .+++.+++. ..+++.+
T Consensus 180 ~~~~-----~~g--~~~~~~-----~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~--~~l~~~~~~---~~~~~~~ 242 (665)
T 2dy1_A 180 AYRY-----ENG--EEREAE-----VPPEERERVQRFRQEVLEAIVETDEGLLEKYLEG--EEVTGEALE---KAFHEAV 242 (665)
T ss_dssp EEEE-----ETT--EEEEEC-----CCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHT--CCCCHHHHH---HHHHHHH
T ss_pred eeec-----CCC--ceeEec-----CCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCC--CCCCHHHHH---HHHHHHH
Confidence 3333 332 233322 2457888899999999999999999999999996 889999987 3556665
Q ss_pred H-hhhccc----------hHHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCC
Q 003378 314 M-QTWLPA----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKG 382 (824)
Q Consensus 314 ~-~~~~P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g 382 (824)
+ .+|+|+ ++.||++|++++|+|.+. ++++|++++|||+..+++.|
T Consensus 243 ~~~~~~pv~~~SA~~~~Gv~~Ll~~i~~~lp~p~~~------------------------~~~~p~~~~V~k~~~d~~~G 298 (665)
T 2dy1_A 243 RRGLLYPVALASGEREIGVLPLLELILEALPSPTER------------------------FGDGPPLAKVFKVQVDPFMG 298 (665)
T ss_dssp HTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCHHHH------------------------HCSCSCEEEEEEEEEETTTE
T ss_pred HhCCeeEEEEeecccCcCHHHHHHHHHHhCCCcccc------------------------CCCCCeEEEEEEEEEcCCCC
Confidence 5 478886 689999999999999642 14579999999999999988
Q ss_pred cceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccccccccce-eeec
Q 003378 383 RFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTN 461 (824)
Q Consensus 383 ~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~ 461 (824)
+ ++|+|||||+|++||.|++.+ .+ ++|++|+.++|++.+++++|.|||||+|.|++++ ++| |||+
T Consensus 299 ~-~~~~rV~sG~l~~g~~v~~~~------~~-----~~v~~l~~~~g~~~~~v~~a~aG~iv~i~gl~~~--~~Gdtl~~ 364 (665)
T 2dy1_A 299 Q-VAYLRLYRGRLKPGDSLQSEA------GQ-----VRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGL--HRGMVLWQ 364 (665)
T ss_dssp E-EEEEEEEESEECTTEEEBCTT------SC-----EEESSEEEEETTEEEEESCEETTCEEEESSCTTC--CTTCEEES
T ss_pred e-EEEEEEcccEEecCCEEEcCC------Ce-----EEEeEEEEEeCCCeeECCEECCCCEEEEeCCccC--ccCCEEec
Confidence 7 999999999999999999531 22 7999999999999999999999999999999987 678 9998
Q ss_pred CCCCCc--cccccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCceEEEec-CCCcEEEEecchHHHHHHHHHHH
Q 003378 462 EKEVDA--HPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQ 538 (824)
Q Consensus 462 ~~~~~~--~~~~~~~~~~~Pv~~~aVep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~il~g~GElHLei~~~rL~ 538 (824)
... + .+++++.++ .|+++++|+|+++.|++||.++|++|++|||++++..+ +|||++|+|||||||||+++||+
T Consensus 365 ~~~--~~~~~l~~~~~~-~P~~~~~i~p~~~~d~~kl~~~L~~l~~edp~l~v~~~~et~e~i~~g~Gelhlei~~~rl~ 441 (665)
T 2dy1_A 365 GEK--PESEEVPFARLP-DPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQ 441 (665)
T ss_dssp SSC--CCGGGSCCCCCC-CCCEEEEEEESSHHHHHHHHHHHHHHHHHCTTSEEEECTTTCCEEEEESSHHHHHHHHHHHH
T ss_pred CCC--ccccccCCCCCC-CceEEEEEEECChhhHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEecCHHHHHHHHHHHH
Confidence 766 5 678888887 89999999999999999999999999999999999997 89999999999999999999999
Q ss_pred hhccCCeEEEEeCCeEeEEecccccccceeeeecCCCeeEEEEEEeeCchhhhhhhcCCcCCCCCChhhHHHhhhhhcCC
Q 003378 539 DDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGW 618 (824)
Q Consensus 539 ~~~~~~v~v~~s~p~V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~ 618 (824)
+| ++++.+++|+|+|||||.++++. .++|++ ++|+. +||+
T Consensus 442 -~~--~v~v~~~~p~V~yrEti~~~~~~------~~~~~k----------------~~gg~--------------g~~~- 481 (665)
T 2dy1_A 442 -DY--GVEVEFSVPKVPYRETIKKVAEG------QGKYKK----------------QTGGH--------------GQYG- 481 (665)
T ss_dssp -HT--TCCEEEECCCCCCEEEESSCEEE------EEEEEE----------------EETTE--------------EEEE-
T ss_pred -HC--CceEEEeCCEEEEEEeeccceee------eeeccc----------------ccCCC--------------cceE-
Confidence 99 99999999999999999987643 333433 33332 3444
Q ss_pred chhccCeEEE-eccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCcceeEEEEeeeeecc-cccccCCC
Q 003378 619 DKDLAKKIWC-FGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGG 696 (824)
Q Consensus 619 ~~~~~~~v~~-~gp~~~g~n~~~~~~~g~~~~~~~~~~i~~Gf~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~ 696 (824)
.+|. +.|.. +|.|.|.+.|+.++++|+++|++||+||+++|||||+||+||+|+|.|+++|. ||++.+
T Consensus 482 ------~v~~~~eP~~--g~~f~~~~~~g~~~~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~ds~~~~-- 551 (665)
T 2dy1_A 482 ------DVWLRLEPAS--EYGFEWRITGGVIPSKYQEAIEEGIKEAAKKGVLAGFPVMGFKAIVYNGSYHEVDSSDLA-- 551 (665)
T ss_dssp ------EEEEEEEECS--SCEEEECCCTTSSCGGGHHHHHHHHHHHHTSCTTTSCCBCSEEEEEEEEECCTTTBCHHH--
T ss_pred ------EEEEEEEECC--CCEEeeeccCCcchHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEeeeccCCCCCHHH--
Confidence 2443 44432 47889999999999999999999999999999999999999999999999997 777654
Q ss_pred ChHHHHHHHHHHHHHhcCCccccc-----------cccchheccccccceeeeeeccCCCCceEEEEEechhhhcCchHH
Q 003378 697 QVIPTARRVIYASQLTAKPRLLEP-----------ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSST 765 (824)
Q Consensus 697 ~~~~a~~~a~~~a~~~a~~~LlEP-----------~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~ 765 (824)
|+.|+++||++|+++|+|+|||| ++|+||++|++|||+|++++..+ ++++|+|++|++|||||+++
T Consensus 552 -f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~g~v~~~l~~rrG~i~~~~~~~--~~~~i~a~~P~~e~~~~~~~ 628 (665)
T 2dy1_A 552 -FQIAASLAFKKVMAEAHPVLLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEG--ALSVVHAEVPLAEVLEYYKA 628 (665)
T ss_dssp -HHHHHHHHHHHHHHHSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEET--TEEEEEEEEEGGGCTTHHHH
T ss_pred -HHHHHHHHHHHHHhhCCCEEEeeeEEEEEEECHHHHHHHHHHHHHCCCEEeCcEecC--CeEEEEEEECHHHHhhHHHH
Confidence 67899999999999999999999 99999999999999999999876 58999999999999999999
Q ss_pred HhhhCCCceEeEeEecceeecCCCCCCCchHHHHHHHHHH
Q 003378 766 LRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIR 805 (824)
Q Consensus 766 Lrs~T~G~~~~~~~f~~y~~v~~~~~~~~~~a~~~i~~~r 805 (824)
|||+|+|+|+|+|+|+||+++|+++ +++++++.+
T Consensus 629 Lrs~T~G~~~~~~~f~~y~~~~~~~------~~~~~~~~~ 662 (665)
T 2dy1_A 629 LPGLTGGAGAYTLEFSHYAEVPPHL------AQRIVQERA 662 (665)
T ss_dssp HHHHHTTCCEEEEEEEEEEECCHHH------HHHHHHHHH
T ss_pred hHhhcCCcEEEEEEeCceeECCccH------HHHHHHHHh
Confidence 9999999999999999999999986 999998864
No 8
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=1.6e-77 Score=695.85 Aligned_cols=447 Identities=21% Similarity=0.273 Sum_probs=319.4
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccc------cCCceeecCChhhHhHhccceeeceEEEEEeechhhhh
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE------VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALK 79 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~------~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~ 79 (824)
.+..|||| +||+|||||||+++||+++|.+.+. ..+..+++|++++||+|||||.++.+++.|+
T Consensus 29 ~r~RNiaI---iaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~------- 98 (548)
T 3vqt_A 29 ARRRTFAI---ISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYR------- 98 (548)
T ss_dssp HTEEEEEE---ECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEET-------
T ss_pred cccceEEE---EeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEEC-------
Confidence 35689999 9999999999999999999998762 1112478999999999999999999999997
Q ss_pred ccccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcc
Q 003378 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLEL 159 (824)
Q Consensus 80 ~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~ 159 (824)
+++|||||||||+||..|+.++|+++|+||+||||++|+++||+.+|++|.++++|+|+|||||||+
T Consensus 99 ---------~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~---- 165 (548)
T 3vqt_A 99 ---------DRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDRE---- 165 (548)
T ss_dssp ---------TEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSC----
T ss_pred ---------CEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccch----
Confidence 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeeccc--CccceeeehhhHHHHhhhhcCCChHHHHHHhh
Q 003378 160 QVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSA--GLHGWAFTLTNFAKMYASKFGVDESKMMERLW 237 (824)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s--~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~ 237 (824)
++++.++.+.+++.+.. ...|. ++|+++ ...|+. |+..+..++|
T Consensus 166 ~ad~~~~~~~i~~~l~~----------------~~~p~--~~Pig~~~~f~g~v----------------dl~~~~~~~~ 211 (548)
T 3vqt_A 166 ALHPLDVMADIEQHLQI----------------ECAPM--TWPIGMGSSFKGTY----------------DLLHKQLHLF 211 (548)
T ss_dssp CCCHHHHHHHHHHHHTS----------------EEEES--EEEESCGGGCCEEE----------------ETTTTEEEEC
T ss_pred hcchhHhhhhhhhhcCC----------------ceEeE--EeeeecCCcccceE----------------eeeeeeeeec
Confidence 99977666555554321 11233 455554 444443 3333334444
Q ss_pred cCcccCCCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhhh
Q 003378 238 GENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTW 317 (824)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~ 317 (824)
.... .+...............+. +..+...+...+.++.+.+ .+.....+ .. ...++
T Consensus 212 ~~~~----~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~-~~~~~~~e-------~~---~~g~~ 268 (548)
T 3vqt_A 212 SATH----GGRIQSGIVIHGADDPQLD--------EYLGDQAEQLRMDLALLEE-AGTPFDEE-------RY---LKGEL 268 (548)
T ss_dssp C-----------CCCEECCSTTCTHHH--------HHHGGGHHHHHHHHHHHHH-HCCCCCHH-------HH---HTTSE
T ss_pred cccc----CCcccccccccccchHHHH--------HHHHHHHHHhhhHHHHHhh-ccCchhHH-------HH---HhCCc
Confidence 3211 0000000000000000111 0011001000111111111 11222211 11 11467
Q ss_pred ccc----------hHHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeec---CCCCcc
Q 003378 318 LPA----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPA---SDKGRF 384 (824)
Q Consensus 318 ~P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~---~~~g~~ 384 (824)
+|+ +++|||+|++|+|+|.+..... ....+.+.||+|+|||+..+ ++.|+
T Consensus 269 ~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~----------------~~~~~~~~p~~a~vfKi~~~~~~~~~Gr- 331 (548)
T 3vqt_A 269 TPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAAT----------------RVVEPGEEAFTGVVFKIQANMDKAHRDR- 331 (548)
T ss_dssp EEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSS----------------SEECTTCSSCEEEEEEEECC-------C-
T ss_pred ceeeecccccCcCHHHHHHHHHHhCCCCCCccccc----------------cccCCCCcCceEEEEEEEccCCcCCCCe-
Confidence 786 7999999999999996543210 01123467999999999876 67776
Q ss_pred eeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCC
Q 003378 385 FAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEK 463 (824)
Q Consensus 385 l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~ 463 (824)
++|+|||||+|++|+.|++ .+++++ +||++++.++|++++++++|.|||||+|.|++++ .+| |||+.+
T Consensus 332 la~~RV~sG~l~~g~~v~~----~~~~~~-----~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~--~~GDTl~~~~ 400 (548)
T 3vqt_A 332 MAFLRICSGTFTRGMRLKH----HRTGKD-----VTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTI--KIGDTFTESK 400 (548)
T ss_dssp EEEEEEEESCEETTCEEEE----TTTTEE-----EECTTCEECCCSSCCSSCEECTTCEEEEECSSCC--CTTCEEESSS
T ss_pred EEEEEEecceecCCCEEEe----eccccc-----cccchhhhhccccccccCEEecCCEEEecCCccC--ccCCEecCCC
Confidence 9999999999999999995 334443 8999999999999999999999999999999997 788 999987
Q ss_pred CCCccccccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCceEEEecCCCcEEEEecchHHHHHHHHHHHhhccC
Q 003378 464 EVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMG 543 (824)
Q Consensus 464 ~~~~~~~~~~~~~~~Pv~~~aVep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g~GElHLei~~~rL~~~~~~ 543 (824)
. +..+++++++ .|+++++|+|+++.|.+||.++|++|+++||+..++.++|||++|+|||||||||+++||+++|
T Consensus 401 ~--~~~~~~i~~~-~P~~~~av~p~~~~d~~kl~~~L~~L~eed~~~v~~~~et~e~il~g~GeLHLeI~~erL~~ey-- 475 (548)
T 3vqt_A 401 E--VLKFVGIPNF-APEHFRRVRLKNPLKAKQLQKGLEQLAEEGAVQLFRPLVNNDYILGAVGVLQFDVIVARLADEY-- 475 (548)
T ss_dssp S--CCCBCCCEEE-CCSEEEEEEESCGGGHHHHHHHHHHHHHTTSSEEEEESSSCCCEEEESSTHHHHHHHHHHHHHH--
T ss_pred C--ccccCCCCCC-CCcceeeeeeCCchhHHHHHHHHHHhhhcCceeEEEECCCCcEEEEEECHHHHHHHHHHHHHHh--
Confidence 6 7788888886 9999999999999999999999999999998665554599999999999999999999999999
Q ss_pred CeEEE-----EeCCeEeEEeccccccc
Q 003378 544 GAEII-----KSDPVVSFRETVLEKSC 565 (824)
Q Consensus 544 ~v~v~-----~s~p~V~yrETi~~~~~ 565 (824)
||++. ++.|+|+|||||...++
T Consensus 476 ~vev~~e~v~~~~P~V~YrEti~~~~~ 502 (548)
T 3vqt_A 476 GVDAVYEGVSTHTARWVYCEDKKIFAD 502 (548)
T ss_dssp CCCEEEEECSCCEEEEEECSCHHHHHH
T ss_pred CCCEEEeeccccCceEEecCCccchhh
Confidence 99976 57899999999988653
No 9
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=2e-70 Score=637.31 Aligned_cols=475 Identities=24% Similarity=0.393 Sum_probs=366.8
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+..+|+| +||+|||||||+++|++.+|.+.....+ .+++|+.+.|++||+|+.+..+.+.|.. .
T Consensus 4 ~~irnI~I---iGh~d~GKTTLi~rLl~~tg~i~~~~~~-~~~~D~~~~ErerGITI~~~~~~~~~~~-----------~ 68 (600)
T 2ywe_A 4 KNVRNFCI---IAHVDHGKSTLADRLLEYTGAISEREKR-EQLLDTLDVERERGITVKMQAVRMFYKA-----------K 68 (600)
T ss_dssp GGEEEEEE---ECC--CCHHHHHHHHHHHHTC------------------------CCCCSEEEEEEC-----------T
T ss_pred cCceEEEE---ECCCCCCHHHHHHHHHhccCCccccccc-ccccccchhhhcccceeeeeEEEEEEEc-----------C
Confidence 35679999 9999999999999999999987664222 5789999999999999999999998862 1
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCHHH
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 165 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~ 165 (824)
++..+.+||||||||.||..++.++++.+|+||+|||+++|++.||..+|.++...++|+|+|+||||+. ++++++
T Consensus 69 dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~----~a~~~~ 144 (600)
T 2ywe_A 69 DGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLP----SADVDR 144 (600)
T ss_dssp TSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTST----TCCHHH
T ss_pred CCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCcc----ccCHHH
Confidence 2346899999999999999999999999999999999999999999999999999999999999999999 777554
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcccCCC
Q 003378 166 AYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 245 (824)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~~~~ 245 (824)
+.+.+. ..+. +.+ .++.++|+..|.
T Consensus 145 v~~el~-------~~lg-----------~~~--~~vi~vSAktg~----------------------------------- 169 (600)
T 2ywe_A 145 VKKQIE-------EVLG-----------LDP--EEAILASAKEGI----------------------------------- 169 (600)
T ss_dssp HHHHHH-------HTSC-----------CCG--GGCEECBTTTTB-----------------------------------
T ss_pred HHHHHH-------HhhC-----------CCc--ccEEEEEeecCC-----------------------------------
Confidence 333222 2111 000 012333331110
Q ss_pred CCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhhhccchHHHH
Q 003378 246 TRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALL 325 (824)
Q Consensus 246 ~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LL 325 (824)
.++.||
T Consensus 170 --------------------------------------------------------------------------GI~~Ll 175 (600)
T 2ywe_A 170 --------------------------------------------------------------------------GIEEIL 175 (600)
T ss_dssp --------------------------------------------------------------------------SHHHHH
T ss_pred --------------------------------------------------------------------------CchHHH
Confidence 025678
Q ss_pred HHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEEcC
Q 003378 326 EMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMG 405 (824)
Q Consensus 326 d~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~~ 405 (824)
+++++++|+|. .++++|+.++|||+..+++.|. ++++||++|+|++||.|++++
T Consensus 176 e~I~~~lp~p~-------------------------~~~~~pl~~lV~~~~~d~~~G~-v~~~rV~sG~l~~Gd~I~~~~ 229 (600)
T 2ywe_A 176 EAIVNRIPPPK-------------------------GDPQKPLKALIFDSYYDPYRGA-VAFVRIFDGEVKPGDKIMLMS 229 (600)
T ss_dssp HHHHHHSCCCC-------------------------CCTTSCCEEEEEEEEEETTTEE-EEEEEEEESEECTTCEEEETT
T ss_pred HHHHHhccccc-------------------------ccccCCcceeEEEEeecccceE-EEEEEEEeCEEecCCEEEecc
Confidence 88899999983 2457899999999999998887 999999999999999999753
Q ss_pred CCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEe-cc---ccccccce-eeecCCCCCc--cccccccccCC
Q 003378 406 PNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-GL---DQYITKNA-TLTNEKEVDA--HPIRAMKFSVS 478 (824)
Q Consensus 406 ~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~-gl---~~~~~~tg-Tl~~~~~~~~--~~~~~~~~~~~ 478 (824)
.+.+ ++|.+++.+.+ +..+++++.||||+++. |+ +++ ++| |||+..+ + .+++++.++ +
T Consensus 230 ----~~~~-----~~v~~i~~~~~-~~~~v~~~~aGdi~~v~~gi~~~~~~--~~GDtl~~~~~--~~~~~l~~~~~~-~ 294 (600)
T 2ywe_A 230 ----TGKE-----YEVTEVGAQTP-KMTKFDKLSAGDVGYIAASIKDVRDI--RIGDTITHAKN--PTKEPVPGFQPA-K 294 (600)
T ss_dssp ----TTEE-----EECCEEEEESS-SEEEESCEETTCEEEEESSCCCTTSS--CTTCEEEESSS--CCSSCCSCCCCC-C
T ss_pred ----ccce-----EeeecccccCC-CceECCEEecCceeeeeccccchhhc--cCCCEEEeCCC--ccccccCCCCCC-C
Confidence 2322 79999999887 58899999999999884 54 454 678 9998765 3 467778775 9
Q ss_pred ceEEEEEEeCCCCCHhHHHHHHHHHHhcCCceEEEecCCCcEEEEe-----cchHHHHHHHHHHHhhccCCeEEEEeCCe
Q 003378 479 PVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAG-----AGELHLEICLKDLQDDFMGGAEIIKSDPV 553 (824)
Q Consensus 479 Pv~~~aVep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g-----~GElHLei~~~rL~~~~~~~v~v~~s~p~ 553 (824)
|+++++|+|.+..|.++|.++|++|.++||+|+++ .+|+|.+++| ||||||||+++||+++| |+++.+++|+
T Consensus 295 P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~-~et~~~l~~g~~~~~~G~lHlei~~erl~re~--~~~v~~~~P~ 371 (600)
T 2ywe_A 295 PMVYAGIYPAEDTTYEELRDALEKYAINDAAIVYE-PESSPALGMGFRVGFLGLLHMEIVQERLEREY--GVKIITTAPN 371 (600)
T ss_dssp CCEEEEEEECTTCCHHHHHHHHHHHHTTCSSCEEE-EEEETTTEEEEEEEESSHHHHHHHHHHHHHHS--CCCEEECCCE
T ss_pred cEEEEEeeccccccHHHHHHHHHHHhhhCCEEEEE-ECCccccccceEEEeccHHHHHHHHHHHHhhc--CceEEEEeee
Confidence 99999999999999999999999999999999997 4677766666 99999999999999999 9999999999
Q ss_pred EeEEecccccccceeeeecCCCeeEEEEEEeeCchhhhhhhcCCcCCCCCChhhHHHhhhhhcCCchhccCeEEEeccCC
Q 003378 554 VSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPET 633 (824)
Q Consensus 554 V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gp~~ 633 (824)
|+|||||.+.. ++ +.+
T Consensus 372 V~yreti~~~g----------~~----~~~-------------------------------------------------- 387 (600)
T 2ywe_A 372 VIYRVKKKFTD----------EV----IEV-------------------------------------------------- 387 (600)
T ss_dssp ECEEEEETTCS----------SC----EEE--------------------------------------------------
T ss_pred EEEEEEecCCC----------cE----EEE--------------------------------------------------
Confidence 99999987421 11 001
Q ss_pred CCCceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCcceeEEEEeeeeecccccccCCCChHHHHHHHHHHHHHhc
Q 003378 634 IGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTA 713 (824)
Q Consensus 634 ~g~n~~~~~~~g~~~~~~~~~~i~~Gf~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~a~~~a 713 (824)
++ | +++|+.+ + +.
T Consensus 388 -------~~-------------------------p-~~~p~~~----------~----~~-------------------- 400 (600)
T 2ywe_A 388 -------RN-------------------------P-MDFPDNA----------G----LI-------------------- 400 (600)
T ss_dssp -------SS-------------------------G-GGSCSCG----------G----GE--------------------
T ss_pred -------eC-------------------------h-hhCCCCC----------c----cc--------------------
Confidence 00 1 3566655 0 00
Q ss_pred CCccccc-----------cccchheccccccceeeeeeccCCCCceEEEEEechhhh-cCchHHHhhhCCCceEeEeEec
Q 003378 714 KPRLLEP-----------ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVES-FGFSSTLRAATSGQAFPQCVFD 781 (824)
Q Consensus 714 ~~~LlEP-----------~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~ 781 (824)
+.|||| |+|+||++|++|||++.+++..++ ++..|+|.+|++|| +||.++|||+|+|+|+|+++|+
T Consensus 401 -~~llEP~~~~~i~vP~e~~G~v~~~~~~rrG~~~~~~~~~~-~~~~i~~~~P~~e~~~~~~~~L~s~T~G~g~~~~~f~ 478 (600)
T 2ywe_A 401 -EYVEEPFVLVTIITPKEYVGPIIQLCQEKRGIQKNMTYLDP-NTVYLEYEMPLSEIIVDFHDKIKSISRGFASYDYEFI 478 (600)
T ss_dssp -EEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEEET-TEEEEEEEEEHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred -ccccCCeEEEEEEecHHHHHHHHHHHHHcCcEEeccEEcCC-CEEEEEEEEcHHHHHhhHHHhhhhcCCCeEEEEEEec
Confidence 268898 999999999999999999998644 58999999999999 8999999999999999999999
Q ss_pred ceeec---------CCCCCCC----------chHHHHHHHHHH
Q 003378 782 HWDMM---------SSDPLEP----------GSQASQLVLDIR 805 (824)
Q Consensus 782 ~y~~v---------~~~~~~~----------~~~a~~~i~~~r 805 (824)
||+++ ++++.|. ....++++.+.+
T Consensus 479 ~y~~~~~~~~~~~~ng~~v~~~~~~~~~~~~~~~~~~~~~~~~ 521 (600)
T 2ywe_A 479 GYRPSDLIKLTVLINKKPVDALSFIVHADRAQKFARRVAEKLR 521 (600)
T ss_dssp EEEECCEEEEEEEESSSBCGGGCEEEEGGGHHHHHHHHHHHHH
T ss_pred cceEccccccccccCCCEeccchhhhhhHHHHHHHHHHHHHHH
Confidence 99999 8888773 245677777755
No 10
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=1.6e-68 Score=622.80 Aligned_cols=473 Identities=25% Similarity=0.383 Sum_probs=357.2
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
+..+|+| +||+|||||||+++|++.+|.+.....+ .+++|+.+.|++||+|+.+..+.+.|.. .+
T Consensus 3 ~irnI~I---iGh~d~GKTTLi~rLl~~tg~i~~~~~~-~~~~D~~~~ErerGiTi~~~~~~~~~~~-----------~~ 67 (599)
T 3cb4_D 3 NIRNFSI---IAHIDHGKSTLSDRIIQICGGLSDREME-AQVLDSMDLERERGITIKAQSVTLDYKA-----------SD 67 (599)
T ss_dssp TEEEEEE---ECCC----CCHHHHHHHHTTC---------------------------CEEEEEEEC-----------TT
T ss_pred CCeEEEE---ECCCCCCHHHHHHHHHHhcCCccccccc-ccccccchhhhcccceeeeeEEEEEEec-----------CC
Confidence 3578999 9999999999999999999988764233 5789999999999999999999999862 13
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCHHHH
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 166 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~ 166 (824)
++++.+||||||||.||..++.++++.+|+||+|||+++|++.||...|.++...++|+|+|+||+|+. +++++++
T Consensus 68 g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~----~a~~~~v 143 (599)
T 3cb4_D 68 GETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLP----AADPERV 143 (599)
T ss_dssp SCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTST----TCCHHHH
T ss_pred CCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcc----cccHHHH
Confidence 346899999999999999999999999999999999999999999999999999999999999999999 8875554
Q ss_pred HHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcccCCCC
Q 003378 167 YQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPAT 246 (824)
Q Consensus 167 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~~~~~ 246 (824)
.+.+.+ .+.. .+ .++.++|+..|
T Consensus 144 ~~ei~~-------~lg~-----------~~--~~vi~vSAktg------------------------------------- 166 (599)
T 3cb4_D 144 AEEIED-------IVGI-----------DA--TDAVRCSAKTG------------------------------------- 166 (599)
T ss_dssp HHHHHH-------HTCC-----------CC--TTCEEECTTTC-------------------------------------
T ss_pred HHHHHH-------HhCC-----------Cc--ceEEEeecccC-------------------------------------
Confidence 433322 1110 00 01222333111
Q ss_pred CceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhhhccchHHHHH
Q 003378 247 RKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLE 326 (824)
Q Consensus 247 ~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd 326 (824)
. .++.|++
T Consensus 167 ------------------------------------------------~------------------------GI~~Ll~ 174 (599)
T 3cb4_D 167 ------------------------------------------------V------------------------GVQDVLE 174 (599)
T ss_dssp ------------------------------------------------T------------------------THHHHHH
T ss_pred ------------------------------------------------C------------------------CchhHHH
Confidence 0 0256788
Q ss_pred HHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEEcCC
Q 003378 327 MMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGP 406 (824)
Q Consensus 327 ~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~~~ 406 (824)
++++++|+|. .++++|+.++||++..+++.|. ++++||++|+|++||.++++.
T Consensus 175 ~I~~~lp~p~-------------------------~~~~~p~~alI~d~~~d~~~G~-v~~~rV~sG~l~~Gd~v~~~~- 227 (599)
T 3cb4_D 175 RLVRDIPPPE-------------------------GDPEGPLQALIIDSWFDNYLGV-VSLIRIKNGTLRKGDKVKVMS- 227 (599)
T ss_dssp HHHHHSCCCC-------------------------CCTTSCCEEEEEEEEEETTTEE-EEEEEEEESCEESSCEEEETT-
T ss_pred HHhhcCCCcc-------------------------ccccCCceeeeeeccccccccE-EEEEEEEeCEEecCCEEEecc-
Confidence 8899999983 2467899999999999999887 999999999999999999753
Q ss_pred CCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEe-cc---ccccccce-eeecCCCCCccccccccccCCceE
Q 003378 407 NYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-GL---DQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVV 481 (824)
Q Consensus 407 ~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~-gl---~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~ 481 (824)
++.. ++|.+++.+.+. .++++++.||||+++. |+ +++ ++| ||++..+....+++++.++ +|++
T Consensus 228 ---~~~~-----~~v~~i~~~~~~-~~~~~~~~aGdi~~~~~gi~~~~~~--~~GDtl~~~~~~~~~~l~~~~~~-~P~v 295 (599)
T 3cb4_D 228 ---TGQT-----YNADRLGIFTPK-QVDRTELKCGEVGWLVCAIKDIHGA--PVGDTLTLARNPAEKALPGFKKV-KPQV 295 (599)
T ss_dssp ---TCCE-----EECCEEEEESSS-EEECSEECTTCEEEEECCCSSGGGS--CTTCEEEESSSCCSSCCTTCCCC-CCCE
T ss_pred ---ccce-----eEEeeeeeccCC-ceECCEEcCCCeeEeeccccccccC--ccCCEeeecCCccccccccccCC-Ccce
Confidence 2332 799999998875 8899999999999884 54 454 678 9998765111567777775 9999
Q ss_pred EEEEEeCCCCCHhHHHHHHHHHHhcCCceEEEecCCCcEEEEe-----cchHHHHHHHHHHHhhccCCeEEEEeCCeEeE
Q 003378 482 RVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAG-----AGELHLEICLKDLQDDFMGGAEIIKSDPVVSF 556 (824)
Q Consensus 482 ~~aVep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g-----~GElHLei~~~rL~~~~~~~v~v~~s~p~V~y 556 (824)
+++++|.+..|.++|.++|++|.++||+|++. .+++|.++.| ||||||||+++||+++| |+++.+++|+|+|
T Consensus 296 ~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~-~et~~~l~~gfr~g~lG~lhlei~~erl~~e~--~~~~~~~~P~V~y 372 (599)
T 3cb4_D 296 YAGLFPVSSDDYEAFRDALGKLSLNDASLFYE-PESSSALGFGFRCGFLGLLHMEIIQERLEREY--DLDLITTAPTVVY 372 (599)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHTTCSSCEEE-EEEETTTEEEEEEEESSHHHHHHHHHHHHHTS--CCCEEECCCEECE
T ss_pred EEEEEecCccCHHHHHHHHHHHHhhCcEEEEE-eccccccccceEEEeccHHHHHHHHHHHHHHc--CceEEEEeeeEEE
Confidence 99999999999999999999999999999997 5778877777 99999999999999999 9999999999999
Q ss_pred EecccccccceeeeecCCCeeEEEEEEeeCchhhhhhhcCCcCCCCCChhhHHHhhhhhcCCchhccCeEEEeccCCCCC
Q 003378 557 RETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGP 636 (824)
Q Consensus 557 rETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gp~~~g~ 636 (824)
||||...+. +.+ . .|.
T Consensus 373 reti~~g~~---------------~~~-----------~----------------------------------~p~---- 388 (599)
T 3cb4_D 373 EVETTSREV---------------IYV-----------D----------------------------------SPS---- 388 (599)
T ss_dssp EEEESSSCE---------------EEE-----------S----------------------------------SGG----
T ss_pred EEEecCCce---------------EEe-----------c----------------------------------Chh----
Confidence 999975320 000 0 000
Q ss_pred ceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCcceeEEEEeeeeecccccccCCCChHHHHHHHHHHHHHhcCCc
Q 003378 637 NMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPR 716 (824)
Q Consensus 637 n~~~~~~~g~~~~~~~~~~i~~Gf~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~a~~~a~~~ 716 (824)
++|..+ . -+.
T Consensus 389 ----------------------------------~~p~~~---------------~---------------------~~~ 398 (599)
T 3cb4_D 389 ----------------------------------KLPAVN---------------N---------------------IYE 398 (599)
T ss_dssp ----------------------------------GSCCGG---------------G---------------------EEE
T ss_pred ----------------------------------hCCCcc---------------c---------------------cch
Confidence 112110 0 025
Q ss_pred cccc-----------cccchheccccccceeeeeeccCCCCceEEEEEechhhh-cCchHHHhhhCCCceEeEeEeccee
Q 003378 717 LLEP-----------ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVES-FGFSSTLRAATSGQAFPQCVFDHWD 784 (824)
Q Consensus 717 LlEP-----------~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~ 784 (824)
|||| |+|.||++|++|||++++++..+ ++..|+|++|++|| +||.++|||+|+|+|+|+++|+||+
T Consensus 399 llEP~~~~~i~~P~e~~G~v~~~~~~rrG~~~~~~~~~--~~~~i~~~~P~~e~~~~~~~~l~s~T~G~~~~~~~~~~y~ 476 (599)
T 3cb4_D 399 LREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHG--NQVALTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQ 476 (599)
T ss_dssp EEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEECCT--TEEEEEEEEEHHHHHTTTHHHHHHHTTSCCEEEEEEEEEE
T ss_pred hhccceEEEEEeCHHHHHHHHHHHHHcCcEEeCcEecC--CeEEEEEEecHHHHHHHHHHhhhhcCCcEEEEEEEecCce
Confidence 7787 99999999999999999999865 38999999999999 8999999999999999999999999
Q ss_pred ec---------CCCCCCC----------chHHHHHHHHHH
Q 003378 785 MM---------SSDPLEP----------GSQASQLVLDIR 805 (824)
Q Consensus 785 ~v---------~~~~~~~----------~~~a~~~i~~~r 805 (824)
++ .+++.|. ....++++.+.+
T Consensus 477 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~ 516 (599)
T 3cb4_D 477 ASDMVRVDVLINGERVDALALITHRDNSQNRGRELVEKMK 516 (599)
T ss_dssp ECCEEEEEEEETTEEEEEEEEEEEGGGHHHHHHHHHHHHH
T ss_pred EecccccccccCCcEecccceeccHHHHHHHHHHHHHHHH
Confidence 99 7777662 245677777755
No 11
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=4.6e-62 Score=563.87 Aligned_cols=444 Identities=19% Similarity=0.259 Sum_probs=311.0
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccc------cCCceeecCChhhHhHhccceeeceEEEEEeechhhhh
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE------VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALK 79 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~------~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~ 79 (824)
.+.++|++ +||+|||||||+++|++..+.+... .....+++|+.+.|++||+|+.+....+.|.
T Consensus 11 ~~~~~I~I---iG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~------- 80 (529)
T 2h5e_A 11 AKRRTFAI---ISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYH------- 80 (529)
T ss_dssp HTEEEEEE---EECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEET-------
T ss_pred cCCCEEEE---ECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEEC-------
Confidence 35689999 9999999999999999887776441 0112457899999999999999999999886
Q ss_pred ccccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcc
Q 003378 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLEL 159 (824)
Q Consensus 80 ~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~ 159 (824)
++.++|||||||.+|..++.++++.+|++|+|+|+.+|++.|+..+|+.+...++|+++|+||+|+.
T Consensus 81 ---------~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~---- 147 (529)
T 2h5e_A 81 ---------DCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRD---- 147 (529)
T ss_dssp ---------TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSC----
T ss_pred ---------CeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCc----
Confidence 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcC
Q 003378 160 QVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGE 239 (824)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~ 239 (824)
+.++.++.+.+++ .+.. ...| .++|++|+..+.++ .|+.....+.|.+
T Consensus 148 ~~~~~~~~~~i~~-------~l~~---------~~~~--~~~pi~sa~~~~Gv--------------~dl~~~~~~~~~~ 195 (529)
T 2h5e_A 148 IRDPMELLDEVEN-------ELKI---------GCAP--ITWPIGCGKLFKGV--------------YHLYKDETYLYQS 195 (529)
T ss_dssp CSCHHHHHHHHHH-------HHCC---------EEEE--SEEEESCGGGCCEE--------------EETTTTEEEECCT
T ss_pred cccHHHHHHHHHH-------HhCC---------Cccc--eecceecccCccee--------------eehhhhhHhhhcc
Confidence 8775544433333 2211 1122 25667777555443 1222221222311
Q ss_pred cccCCCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHH-hhhc
Q 003378 240 NFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWL 318 (824)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~ 318 (824)
..+..+... ...+ .+.+ + ++.+. .+++++++++++ +++..+++. ..+.+++. ..++
T Consensus 196 ----~~g~~~~~~----~~i~-~~~~----~--~l~e~---~~~~~~~~~~e~--~~l~~~~~~---~~~~~~~~~~~~~ 252 (529)
T 2h5e_A 196 ----GKGHTIQEV----RIVK-GLNN----P--DLDAA---VGEDLAQQLRDE--LELVKGASN---EFDKELFLAGEIT 252 (529)
T ss_dssp ----TCCSSCCCC----CEEC-CSSC----H--HHHHH---HCHHHHHHHHHH--HHHHHHHSC---CCCHHHHHTTSEE
T ss_pred ----cCCCccccc----ccCC-CCCH----H--HHHHh---hCHHHHHHhhcc--cchhhhhhh---hhhHHHHHhCcee
Confidence 000000000 0000 0000 0 12222 145677777776 332222221 01122333 4677
Q ss_pred cc----------hHHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCC-CCCeEEEEEEeee---cCCCCcc
Q 003378 319 PA----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDP-EGPLMLYVSKMIP---ASDKGRF 384 (824)
Q Consensus 319 P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~p~va~VfK~~~---~~~~g~~ 384 (824)
|+ ++.|||++++++|+|.++... ...+++ ++||+|+|||+.. .++.|+
T Consensus 253 Pv~~gSA~~~~Gv~~LLd~i~~~~P~P~~~~~~-----------------~~~~~~~~~~~~~~vfKi~~~~d~~~~G~- 314 (529)
T 2h5e_A 253 PVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTD-----------------TRTVEASEDKFTGFVFKIQANMDPKHRDR- 314 (529)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHSCSSCCEEBS-----------------SCEECTTCCSCEEEEEEECSSCCSSSSCC-
T ss_pred EEEeeecccCCCHHHHHHHHHHhCCCCCccccc-----------------ccccCCCCCCeEEEEEEEeeccCcCCCce-
Confidence 75 689999999999999654310 001222 6899999999976 345677
Q ss_pred eeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCC
Q 003378 385 FAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEK 463 (824)
Q Consensus 385 l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~ 463 (824)
++|+|||||+|++||.|++.+ .+++ +||++++.++|.+++++++|.|||||+|.|++.+ ++| |||+..
T Consensus 315 i~~~RV~sG~l~~g~~v~~~~----~~~~-----~~v~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~--~~Gdtl~~~~ 383 (529)
T 2h5e_A 315 VAFMRVVSGKYEKGMKLRQVR----TAKD-----VVISDALTFMAGDRSHVEEAYPGDILGLHNHGTI--QIGDTFTQGE 383 (529)
T ss_dssp CEEEEEEESCEETTCEEEETT----TTEE-----EECSCEECCCC-----CCEECTTCEEEECCSSCC--CTTCEEESSC
T ss_pred EEEEEEecCeEcCCCEEEEee----CCCE-----EEeceeeEEeCCCceEcceECCCCEEEEeccCCC--ccCCEeecCC
Confidence 999999999999999999643 3333 7999999999999999999999999999999987 778 999854
Q ss_pred CCCccccccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCceEEEec-CCCcEEEEecchHHHHHHHHHHHhhcc
Q 003378 464 EVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFM 542 (824)
Q Consensus 464 ~~~~~~~~~~~~~~~Pv~~~aVep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~il~g~GElHLei~~~rL~~~~~ 542 (824)
...+++++++ .|+++++|+|+++.|.+||.+||++|++||| +++..+ +|||++|+|||||||||+++||+++|
T Consensus 384 ---~~~~~~~~~~-~P~~~~~v~~~~~~d~~kl~~~L~~L~~ed~-~~~~~~~~t~~~il~~~Gelhlev~~~rl~~ey- 457 (529)
T 2h5e_A 384 ---MMKFTGIPNF-APELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPISNNDLIVGAVGVLQFDVVVARLKSEY- 457 (529)
T ss_dssp ---CCCBCCCEEE-CCSEEEEEEESCC---CTHHHHHHHHHHTTS-CEEEEETTSCCEEEEESSTHHHHHHHHHHHHHS-
T ss_pred ---ccccCCCCCC-CccEEEEEEECChHHHHHHHHHHHHHHhhCC-EEEEEeCCCCcEEEEEECHHHHHHHHHHHHHHh-
Confidence 3567888876 8999999999999999999999999999998 888876 89999999999999999999999999
Q ss_pred CCeEEEEeCCeEeEEeccccc
Q 003378 543 GGAEIIKSDPVVSFRETVLEK 563 (824)
Q Consensus 543 ~~v~v~~s~p~V~yrETi~~~ 563 (824)
|+++.+++|+|+|||||...
T Consensus 458 -~v~v~~~~~~v~y~eti~~~ 477 (529)
T 2h5e_A 458 -NVEAVYESVNVATARWVECA 477 (529)
T ss_dssp -SCCEEEECCCCSEEEEEECS
T ss_pred -CcEEEEecCceeEEEEEcCC
Confidence 99999999999999999643
No 12
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=2.2e-60 Score=549.27 Aligned_cols=438 Identities=20% Similarity=0.283 Sum_probs=334.3
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCc--------eeecCChhhHhHhccceeeceEEEEEeechhh
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGD--------VRMTDTRQDEAERGITIKSTGISLYYEMTDAA 77 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~--------~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~ 77 (824)
.+..+|+| +||+|+|||||+++|++.+|.+.. .|. ..++|+.+.|++||+|+.++...+.|.
T Consensus 11 ~~~r~IaI---iG~~~aGKTTL~~~Ll~~~g~i~~--~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~----- 80 (528)
T 3tr5_A 11 AMRRTFAI---ISHPDAGKTTLTEKLLLFGGAIQL--AGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK----- 80 (528)
T ss_dssp HTEEEEEE---EECTTSSHHHHHHHHHHHTTCHHH--HHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET-----
T ss_pred hcCCEEEE---ECCCCCcHHHHHHHHHhhcCCccc--ceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC-----
Confidence 35679999 999999999999999999998855 221 347899999999999999999999886
Q ss_pred hhccccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchh
Q 003378 78 LKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFL 157 (824)
Q Consensus 78 ~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~ 157 (824)
++.++|||||||.+|..++.++++.+|+||+|+|+.+|++.++..+|+++...++|+++|+||+|+.
T Consensus 81 -----------~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~-- 147 (528)
T 3tr5_A 81 -----------DYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRD-- 147 (528)
T ss_dssp -----------TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSC--
T ss_pred -----------CEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc--
Confidence 8999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcC--CChHHHHHH
Q 003378 158 ELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFG--VDESKMMER 235 (824)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~--id~~~l~~~ 235 (824)
+.++.+..+.+++. +.. ...| .++|++++ +.|. +|+.....+
T Consensus 148 --~~~~~~~l~ei~~~-------l~~---------~~~~--~~~pig~~----------------~~f~gv~dl~~~~~~ 191 (528)
T 3tr5_A 148 --TRPSIELLDEIESI-------LRI---------HCAP--VTWPIGMG----------------KYFKGIYHLIEDAIY 191 (528)
T ss_dssp --CSCHHHHHHHHHHH-------HCC---------EEEE--SEEEESCG----------------GGCCEEEETTTTEEE
T ss_pred --cccHHHHHHHHHHh-------hCC---------Ccee--eecccccC----------------CceeEEEEeecCEEE
Confidence 88866554443332 210 1112 24566554 2221 444444445
Q ss_pred hhcCcccCCCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHH-HHHHH
Q 003378 236 LWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKAL-MKRVM 314 (824)
Q Consensus 236 l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l-~~~i~ 314 (824)
.|.+. ........ +...... ++ .+.+.+. ++ +++|+++ +++..++.. ++ .+++.
T Consensus 192 ~~~~~----~~~~~~~~-----~~~~~~~----~~--~~~~~l~---~~-~~~~~e~--~~l~~~~~~----~~~~~~~~ 246 (528)
T 3tr5_A 192 LYQPG----KHERVGES-----ERIEGIN----NP--ELDKKLG---DL-ASELRNE--IELVKGASH----PFEREGYL 246 (528)
T ss_dssp ECCTT----SSSSTTCS-----CEEECTT----CH--HHHHHHT---HH-HHHHHHH--HHHHHHHSC----CCCHHHHH
T ss_pred EecCC----CCCccccc-----ccccccc----hH--HHHHHHH---HH-HHHHhhh--cchhhhhhh----HHHHHHHh
Confidence 55321 00001000 0000110 11 1111111 11 5666655 222111110 11 23333
Q ss_pred -hhhccc----------hHHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccC-CCCCeEEEEEEeee--cC-
Q 003378 315 -QTWLPA----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCD-PEGPLMLYVSKMIP--AS- 379 (824)
Q Consensus 315 -~~~~P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~p~va~VfK~~~--~~- 379 (824)
.+++|+ ++.||+++++++|+|.+..... ..++ .++|++|+|||+.. ++
T Consensus 247 ~~~~~PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~~-----------------~~~~~~~~~~~~~VFKi~~~~dp~ 309 (528)
T 3tr5_A 247 KGELTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNS-----------------RLVKPEEEKFSGFVFKIQANMDPG 309 (528)
T ss_dssp TTSEEEEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBSS-----------------SCBCTTSSSCEEEEEEEEECCC-C
T ss_pred cCceeEEEeccccCCccHHHHHHHHHHhCCCCCcccccc-----------------eeeCCCcccceeEEEEEecccCcc
Confidence 467786 7999999999999996543210 0122 36899999999986 66
Q ss_pred CCCcceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccccccccce-e
Q 003378 380 DKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-T 458 (824)
Q Consensus 380 ~~g~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~~~~~~tg-T 458 (824)
+.|+ ++|+|||||+|++||.|++. +++++ +||++++.++|++++++++|.|||||++.|++.+ ++| |
T Consensus 310 ~~g~-l~~~RV~sG~l~~g~~v~~~----~~~~~-----~rv~~~~~~~~~~~~~v~~a~aGdI~~~~~l~~~--~~GDt 377 (528)
T 3tr5_A 310 HRDR-IAFLRIASGQYQKGMKAYHV----RLKKE-----IQINNALTFMAGKRENAEEAWPGDIIGLHNHGTI--QIGDT 377 (528)
T ss_dssp CCCE-EEEEEEEESCEETTEEEEET----TTTEE-----EEESSCBCCBTTCSSCCSEECTTCEEEEEESSSC--CTTCE
T ss_pred CCce-EEEEEEecCeEcCCCEEEec----CCCce-----EEEeeeEEEeCCCeeECCEECCCCEEEEcCCCCC--ccCCE
Confidence 6786 99999999999999999953 34433 8999999999999999999999999999999987 788 9
Q ss_pred eecCCCCCccccccccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCceEEEec-CCCcEEEEecchHHHHHHHHHH
Q 003378 459 LTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDL 537 (824)
Q Consensus 459 l~~~~~~~~~~~~~~~~~~~Pv~~~aVep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~il~g~GElHLei~~~rL 537 (824)
||+. . ...+.++.++ .|+++++|+|+++.|.+||.+||++|++|||+ ++..+ +|||++|+|||||||||+++||
T Consensus 378 l~~~-~--~~~~~~~~~~-~P~~~~~i~~~~~~d~~kl~~aL~~L~~ED~~-~~~~~~~~~~~il~~~G~lhlev~~~rL 452 (528)
T 3tr5_A 378 FTQG-E--RFKFTGIPNF-ASELFRLVRLKDPLKQKALLKGLTQLSEEGAT-QLFRPLDSNELILGAVGLLQFDVVAYRL 452 (528)
T ss_dssp EESS-C--CCCBCCCEEE-CCSEEEEEEESCGGGHHHHHHHHHHHHHTTSC-EEEEETTCCCEEEEESSTHHHHHHHHHH
T ss_pred EcCC-C--CcccCCCCCC-CCCEEEEEEECChhHHHHHHHHHHHHHhcCCe-EEEEcCCCCCEEEEEEcHHHHHHHHHHH
Confidence 9984 3 4667788876 89999999999999999999999999999997 66666 8999999999999999999999
Q ss_pred HhhccCCeEEEEeCCeEeEEeccccc
Q 003378 538 QDDFMGGAEIIKSDPVVSFRETVLEK 563 (824)
Q Consensus 538 ~~~~~~~v~v~~s~p~V~yrETi~~~ 563 (824)
+++| |+++.+++|+|+|+|+|...
T Consensus 453 ~~ey--~v~v~~~~~~v~~~~~i~~~ 476 (528)
T 3tr5_A 453 ENEY--NVKCVYESVNVVTARWVICD 476 (528)
T ss_dssp HHHH--CCCEEEECCSCCEEEEEECS
T ss_pred HHHh--CcEEEEecCceEEEEEecCC
Confidence 9999 99999999999999999754
No 13
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=100.00 E-value=1.7e-34 Score=306.86 Aligned_cols=193 Identities=20% Similarity=0.342 Sum_probs=146.2
Q ss_pred EEeccccccccce-eeecCCCCCccccccccccCCceEEEEEEeCCC----CC-----HhHHHHHHHHHHhcCCceEEEe
Q 003378 445 AMVGLDQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVA----SD-----LPKLVEGLKRLAKSDPMVVCSM 514 (824)
Q Consensus 445 ai~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~aVep~~~----~d-----~~kL~~aL~~L~~eDPsl~v~~ 514 (824)
||.||+++ ++| |||+... +.+++++.++ +|+++++|+|.+. .| ..+|.++|++|.++||+|+|+.
T Consensus 2 av~Gl~~~--~iGDTl~~~~~--p~~L~~~~~~-ePvvs~~i~p~~~p~ag~d~~~vt~~kL~~aL~kl~~eDpsL~v~~ 76 (332)
T 3e3x_A 2 NATGLGEL--KISDTICAQNA--VEALPALSVD-EPTVTMTFQVNTSPFAGXEGXFVTSRNILERLEKELVHNVALRVEQ 76 (332)
T ss_dssp -------------------------------CC-CCCEEEEEECCCSTTTTSSCSBCSHHHHHHHHHHHHHHCTTCEEEE
T ss_pred CccCCCCC--ccCCEEcCCCC--cccCCCCCCC-CCEEEEEEEECCCCccccccccchHHHHHHHHHHHhccCCEEEEEE
Confidence 57889887 788 9999876 6778888886 9999999999987 65 6799999999999999999999
Q ss_pred c-CCCcEEEEecchHHHHHHHHHHHhhccCCeEEEEeCCeEeEEecccccccceeeeecCCCeeEEEEEEeeCchhhhhh
Q 003378 515 E-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEA 593 (824)
Q Consensus 515 ~-etge~il~g~GElHLei~~~rL~~~~~~~v~v~~s~p~V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~ 593 (824)
+ +++|++|+|||||||||+++||+++ |+++.+++|+|+|||| .+ ..+||+
T Consensus 77 ~~~t~~~~v~G~GELHLeIl~ErLrrE---g~ev~v~~P~V~YrEt-~G------------------~llEPi------- 127 (332)
T 3e3x_A 77 TDDPDKFRVSGRGELHLSILIENMRRE---GFELAVSRPEVIIXEE-DG------------------QLMEPF------- 127 (332)
T ss_dssp CSSTTEEEEEESSHHHHHHHHHHHHHH---TBCEEECCCEECCEEE-TT------------------EEEEEE-------
T ss_pred cCCCCeEEEEeeCHHHHHHHHHHHHhc---CceEEEeCCEEEEEEE-CC------------------EEECcE-------
Confidence 8 8999999999999999999999998 9999999999999997 10 123332
Q ss_pred hcCCcCCCCCChhhHHHhhhhhcCCchhccCeEEEeccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCC
Q 003378 594 IDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEEN 673 (824)
Q Consensus 594 i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gp~~~g~n~~~~~~~g~~~~~~~~~~i~~Gf~~a~~~Gpl~~~p 673 (824)
T Consensus 128 -------------------------------------------------------------------------------- 127 (332)
T 3e3x_A 128 -------------------------------------------------------------------------------- 127 (332)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeEEEEeeeeecccccccCCCChHHHHHHHHHHHHHhcCCccccc--cccchheccccccceeeeeeccCCCCceEEE
Q 003378 674 MRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEP--ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIK 751 (824)
Q Consensus 674 v~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~a~~~a~~~LlEP--~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~ 751 (824)
..+.+.+ | |+|.|+++|++|||++.+++..++ +++.|+
T Consensus 128 -~~v~I~v--------------------------------------Pee~~G~Vm~~L~~RRG~i~~m~~~~~-g~~~I~ 167 (332)
T 3e3x_A 128 -ETVTIDV--------------------------------------MEEHQGGIMENIGLRXGELXDMAPDGK-GRVRMD 167 (332)
T ss_dssp -EEEEEEE--------------------------------------EGGGHHHHHHHHHHTTCEEEEEEECSS-SEEEEE
T ss_pred -EEEEEEE--------------------------------------CHHHHHHHHHHHHhhcccccCceECCC-CeEEEE
Confidence 1111111 2 788999999999999999998743 588999
Q ss_pred EEechhhhcCchHHHhhhCCCceEeEeEecceeec-CCCCC
Q 003378 752 AYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMM-SSDPL 791 (824)
Q Consensus 752 a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v-~~~~~ 791 (824)
|++|++|||||.++|||+|+|+|+|+++|+||+++ |+++-
T Consensus 168 ~~vPl~el~Gy~~eLrS~T~G~g~~~~~F~~Y~p~~pg~i~ 208 (332)
T 3e3x_A 168 FIMPSRGLIGFQTEFMTLTSGSGLLYHTFDHYGPHXGGNIG 208 (332)
T ss_dssp EEEEHHHHTTHHHHHHHHTTTCCEEEEEEEEEEECCCCSCS
T ss_pred EEEChHHhhhHHHHhhhhCCCcEEEEEEecCceEcCCCccc
Confidence 99999999999999999999999999999999999 89874
No 14
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.97 E-value=5.6e-30 Score=290.63 Aligned_cols=287 Identities=19% Similarity=0.287 Sum_probs=209.0
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCccccc----------CCc-----eeecCChhhHhHhccceeeceEEEE
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRQDEAERGITIKSTGISLY 70 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~----------~g~-----~~~~D~~~~E~~rgiTi~~~~~~~~ 70 (824)
...++|++ +||+|+|||||+++|++..+.+.... .|+ .+++|..++|++||+|++.....+.
T Consensus 15 k~~~~i~i---iG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~ 91 (439)
T 3j2k_7 15 KEHVNVVF---IGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE 91 (439)
T ss_pred CceeEEEE---EeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence 56789999 99999999999999999998876542 121 3478999999999999999988887
Q ss_pred EeechhhhhccccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcc-------hhHHHHHHHHHhCCC
Q 003378 71 YEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------VQTETVLRQALGERI 143 (824)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~-------~~t~~~l~~~~~~~~ 143 (824)
+. ++.++|||||||.+|...+..+++.+|++|+|||+.+|+. .||++++..+...++
T Consensus 92 ~~----------------~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v 155 (439)
T 3j2k_7 92 TE----------------KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGV 155 (439)
T ss_pred cC----------------CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCC
Confidence 75 7899999999999999999999999999999999999986 799999999999999
Q ss_pred c-eEEEEeCCCcchhcccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCceeecc-cceeecccCccceeeehhhHHHHh
Q 003378 144 R-PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPE-KGTVAFSAGLHGWAFTLTNFAKMY 221 (824)
Q Consensus 144 p-~ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~-~~~v~~~s~~~g~~~~~~~fa~~~ 221 (824)
| +|+|+||||++ ..++++ +.++++.+++..++..++ +.|. ..++...|++.|++..--
T Consensus 156 ~~iIvviNK~Dl~----~~~~~~--~~~~~i~~~~~~~l~~~g--------~~~~~~~~~i~iSA~~G~ni~~l------ 215 (439)
T 3j2k_7 156 KHLIVLINKMDDP----TVNWSN--ERYEECKEKLVPFLKKVG--------FNPKKDIHFMPCSGLTGANLKEQ------ 215 (439)
T ss_pred CeEEEEeecCCCc----ccchHH--HHHHHHHHHHHHHHHHhc--------ccccCCeeEEEeeccCCcccccc------
Confidence 9 78999999997 544322 234444455555443321 1111 124555677776643100
Q ss_pred hhhcCCChHHHHHHhhcCcccCCCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHH
Q 003378 222 ASKFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEE 301 (824)
Q Consensus 222 ~~~~~id~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~e 301 (824)
.. ..-| |+ +
T Consensus 216 --------~~--~~~w----~~------------------------------------------------g--------- 224 (439)
T 3j2k_7 216 --------SD--FCPW----YI------------------------------------------------G--------- 224 (439)
T ss_pred --------cc--cccc----cC------------------------------------------------c---------
Confidence 00 0001 00 0
Q ss_pred HHHhHHHHHHHHHhhhccchHHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCC
Q 003378 302 KELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDK 381 (824)
Q Consensus 302 l~~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~ 381 (824)
..|++.+ +.+|.|. .+.+.|+.+.|..++. +.
T Consensus 225 --------------------~~L~~~l-~~i~~~~-------------------------~~~~~p~r~~v~~~~~--~~ 256 (439)
T 3j2k_7 225 --------------------LPFIPYL-DNLPNFN-------------------------RSVDGPIRLPIVDKYK--DM 256 (439)
T ss_pred --------------------hHHHHHH-HhCCCCc-------------------------cCCCCCeEEEEEEEEc--CC
Confidence 1233322 3356552 1245788888888764 45
Q ss_pred CcceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEE--Eeccccccccce-e
Q 003378 382 GRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVA--MVGLDQYITKNA-T 458 (824)
Q Consensus 382 g~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIva--i~gl~~~~~~tg-T 458 (824)
|. ++.+||.+|+|++||.|.+++.+ .+ .+|++|+. ...++++|.|||+|+ +.|++...++.| +
T Consensus 257 G~-v~~G~v~~G~l~~Gd~v~~~p~~----~~-----~~V~~i~~----~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~v 322 (439)
T 3j2k_7 257 GT-VVLGKLESGSIFKGQQLVMMPNK----HN-----VEVLGILS----DDTETDFVAPGENLKIRLKGIEEEEILPGFI 322 (439)
T ss_pred Ce-EEEEEEEeeEEecCCEEEEccCC----ce-----EEEEEEEE----CCeEcCEecCCCcceEEEeccchhhcCCcEE
Confidence 66 99999999999999999986532 22 68888865 457899999999999 678776555678 8
Q ss_pred eecCCC
Q 003378 459 LTNEKE 464 (824)
Q Consensus 459 l~~~~~ 464 (824)
||+.++
T Consensus 323 l~~~~~ 328 (439)
T 3j2k_7 323 LCDPSN 328 (439)
T ss_pred ecCCCC
Confidence 877544
No 15
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.97 E-value=3.1e-30 Score=289.54 Aligned_cols=284 Identities=20% Similarity=0.270 Sum_probs=201.1
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
..++|++ +||+|||||||+++|+...........-..+.+|..++|+++|+|++.+...+.+.
T Consensus 2 ~~~~I~i---iG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-------------- 64 (397)
T 1d2e_A 2 PHVNVGT---IGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA-------------- 64 (397)
T ss_dssp CEEEEEE---ESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECS--------------
T ss_pred CeEEEEE---EeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccC--------------
Confidence 4589999 99999999999999986432100000001234788889999999999877666553
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCc-eEEEEeCCCcchhcccCCHHH
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQVDGEE 165 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p-~ilviNKiD~~~~~~~~~~~~ 165 (824)
++.++|||||||.+|..++..+++.+|++|+|||+.+|+..||.++|..+...++| +|+|+||||+. . +. +
T Consensus 65 --~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~----~-~~-~ 136 (397)
T 1d2e_A 65 --ARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAV----Q-DS-E 136 (397)
T ss_dssp --SCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGC----S-CH-H
T ss_pred --CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccC----C-CH-H
Confidence 68999999999999999999999999999999999999999999999999999999 57999999997 4 32 2
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcccCCC
Q 003378 166 AYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 245 (824)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~~~~ 245 (824)
. ++.+.+++...+..+. +.+...++...|++.|++- +
T Consensus 137 ~---~~~~~~~~~~~l~~~~--------~~~~~~~~i~~SA~~g~n~--------------------------~------ 173 (397)
T 1d2e_A 137 M---VELVELEIRELLTEFG--------YKGEETPIIVGSALCALEQ--------------------------R------ 173 (397)
T ss_dssp H---HHHHHHHHHHHHHHTT--------SCTTTSCEEECCHHHHHTT--------------------------C------
T ss_pred H---HHHHHHHHHHHHHHcC--------CCcccCcEEEeehhhcccc--------------------------c------
Confidence 2 2222333333333211 0111112333444322100 0
Q ss_pred CCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhhhccc-hHHH
Q 003378 246 TRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPA-SSAL 324 (824)
Q Consensus 246 ~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~-~~~L 324 (824)
.+-| ... +..|
T Consensus 174 -----------------------~~~~---------------------------------------------~~g~i~~L 185 (397)
T 1d2e_A 174 -----------------------DPEL---------------------------------------------GLKSVQKL 185 (397)
T ss_dssp -----------------------CTTT---------------------------------------------THHHHHHH
T ss_pred -----------------------CCCc---------------------------------------------cCCcHHHH
Confidence 0000 001 2568
Q ss_pred HHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEEc
Q 003378 325 LEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIM 404 (824)
Q Consensus 325 Ld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~ 404 (824)
++++.+++|.|. .+.++|+.++|++++..++.|. ++++||++|+|++||.|+++
T Consensus 186 l~~l~~~~p~p~-------------------------~~~~~p~~~~v~~v~~~~~~G~-v~~g~v~~G~l~~gd~v~~~ 239 (397)
T 1d2e_A 186 LDAVDTYIPVPT-------------------------RDLEKPFLLPVESVYSIPGRGT-VVTGTLERGILKKGDECEFL 239 (397)
T ss_dssp HHHHHHHSCCCC-------------------------CCTTSCCEEECCEEEEETTTEE-EEEEECCBSEEETTCEEEEE
T ss_pred HHHHHHhCCCCC-------------------------CCCCCcEEEEEEEEEEeCCceE-EEEEEEeeceEeCCCEEEEe
Confidence 888999999883 1245799999999998888887 99999999999999999987
Q ss_pred CCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEe--ccccccccce-eeecCC
Q 003378 405 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TLTNEK 463 (824)
Q Consensus 405 ~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~--gl~~~~~~tg-Tl~~~~ 463 (824)
+.+. . ...+|.+|... ..++++|.|||++++. |++....+.| +|++..
T Consensus 240 ~~~~---~----~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~~~ 290 (397)
T 1d2e_A 240 GHSK---N----IRTVVTGIEMF----HKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPG 290 (397)
T ss_dssp ETTE---E----EEEEEEEEEET----TEEESEEETTCEEEEEESSCCGGGCCTTCEEESTT
T ss_pred CCCC---C----eEEEEEEEEEC----CcccCEecCCCceEEEecccchhccCceeEEeCCC
Confidence 5320 0 12688888653 3789999999999876 6644334677 888743
No 16
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.97 E-value=2.5e-29 Score=283.03 Aligned_cols=293 Identities=23% Similarity=0.310 Sum_probs=205.1
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHH---cCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAA---AGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYR 82 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~---~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~ 82 (824)
...++|++ +||+|||||||+++|+.. .|.... .-....+|..++|+++|+|++.....+.+.
T Consensus 9 ~~~~~I~i---iG~~~~GKSTLi~~L~~~~~~~g~~~~--~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~---------- 73 (405)
T 2c78_A 9 KPHVNVGT---IGHVDHGKTTLTAALTYVAAAENPNVE--VKDYGDIDKAPEERARGITINTAHVEYETA---------- 73 (405)
T ss_dssp CCEEEEEE---ECSTTSSHHHHHHHHHHHHHHSCTTSC--CCCHHHHSCSHHHHHHTCCCSCEEEEEECS----------
T ss_pred CCeEEEEE---EcCCCCCHHHHHHHHHhhhhhcCcccc--ccchhhccCCHHHHHcCCCEEeeeeEeccC----------
Confidence 45689999 999999999999999864 221000 001235899999999999999877766654
Q ss_pred cccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCc-eEEEEeCCCcchhcccC
Q 003378 83 GERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQV 161 (824)
Q Consensus 83 ~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p-~ilviNKiD~~~~~~~~ 161 (824)
++.++|||||||.+|..++.++++.+|++|+|||+.+|...||.++|..+...++| +|+|+||||+. .
T Consensus 74 ------~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~----~- 142 (405)
T 2c78_A 74 ------KRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMV----D- 142 (405)
T ss_dssp ------SCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGC----C-
T ss_pred ------CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECcccc----C-
Confidence 68999999999999999999999999999999999999999999999999999999 67999999997 4
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcc
Q 003378 162 DGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENF 241 (824)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~ 241 (824)
+. +. ++.+.+++...+..+.. .+...++...|++.|++.. .. ..
T Consensus 143 ~~-~~---~~~~~~~~~~~l~~~~~--------~~~~~~~i~~SA~~g~~v~--------------------~~--~~-- 186 (405)
T 2c78_A 143 DP-EL---LDLVEMEVRDLLNQYEF--------PGDEVPVIRGSALLALEQM--------------------HR--NP-- 186 (405)
T ss_dssp CH-HH---HHHHHHHHHHHHHHTTS--------CTTTSCEEECCHHHHHHHH--------------------HH--CT--
T ss_pred cH-HH---HHHHHHHHHHHHHHhcc--------cccCCCEEEccHHHhhhhh--------------------cc--cc--
Confidence 32 22 22222333333332210 1111134445654433110 00 00
Q ss_pred cCCCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhhhccch
Q 003378 242 FDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPAS 321 (824)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~ 321 (824)
.+. .... .|.+.+
T Consensus 187 ------~~~-----------------------------~~~~--------------------------------~~~~~i 199 (405)
T 2c78_A 187 ------KTR-----------------------------RGEN--------------------------------EWVDKI 199 (405)
T ss_dssp ------TCC-----------------------------TTSC--------------------------------HHHHHH
T ss_pred ------ccc-----------------------------cCCC--------------------------------cccccH
Confidence 000 0000 011113
Q ss_pred HHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEEeeeecCCCEE
Q 003378 322 SALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKV 401 (824)
Q Consensus 322 ~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v 401 (824)
..|++++.+++|.|. .+.++|+.++|..++..++.|. ++++||+||+|+.||.|
T Consensus 200 ~~Ll~~l~~~lp~p~-------------------------~~~~~p~~~~v~~v~~~~~~G~-v~~g~v~~G~l~~gd~v 253 (405)
T 2c78_A 200 WELLDAIDEYIPTPV-------------------------RDVDKPFLMPVEDVFTITGRGT-VATGRIERGKVKVGDEV 253 (405)
T ss_dssp HHHHHHHHHHSCCCC-------------------------CCCSSCCEEECCEEEEETTTEE-EEEEECCBSEEETTCEE
T ss_pred HHHHHHHHhhcCCCC-------------------------CCCCCCcEEEEEEEEEcCCCce-EEEEEEecccccCCCEE
Confidence 578999999999883 1245789999888888888887 99999999999999999
Q ss_pred EEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEe--ccccccccce-eeecCC
Q 003378 402 RIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TLTNEK 463 (824)
Q Consensus 402 ~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~--gl~~~~~~tg-Tl~~~~ 463 (824)
++++.+. + ....+|.+|... ..++++|.|||++++. |++....+.| +||+..
T Consensus 254 ~~~~~~~--~----~~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~g~~~~~i~~G~~l~~~~ 308 (405)
T 2c78_A 254 EIVGLAP--E----TRKTVVTGVEMH----RKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPG 308 (405)
T ss_dssp EEESSSS--S----CEEEEEEEEEET----TEEESEEETTCEEEEEESSCCTTTCCTTCEEESTT
T ss_pred EEeCCCC--C----eeeEEEEEEEEC----CcccCEEcCCCEEEEEECCCcHhhcCceEEEEcCC
Confidence 9875321 0 013688888643 3789999999999876 6643334677 888743
No 17
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.96 E-value=4.4e-30 Score=299.83 Aligned_cols=331 Identities=17% Similarity=0.170 Sum_probs=219.4
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccc--
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG-- 83 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~-- 83 (824)
.++.+|++ +||+|||||||+++|+..... ++ ..+|+|.......+.|............
T Consensus 3 ~r~~~V~I---vGh~d~GKTTLl~~L~~~~v~------------~~----e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~ 63 (594)
T 1g7s_A 3 IRSPIVSV---LGHVDHGKTTLLDHIRGSAVA------------SR----EAGGITQHIGATEIPMDVIEGICGDFLKKF 63 (594)
T ss_dssp ECCCEEEE---ECSTTSSHHHHHHHHHHHHHS------------CC--------CCCBTTEEEEEHHHHHHHSCGGGGGC
T ss_pred CCCcEEEE---ECCCCCcHHHHHHHHhcccCc------------cc----cCCceecccCeEEEeechhhhhcccccccc
Confidence 35678999 999999999999999754321 11 0146666655555544310000000000
Q ss_pred ccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchh---ccc
Q 003378 84 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFL---ELQ 160 (824)
Q Consensus 84 ~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~---~~~ 160 (824)
..+.....++|||||||.+|..++.++++.+|++|+|+|+.+|+++||...|+++...++|+|+|+||||+.-. +.+
T Consensus 64 ~v~~~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~ 143 (594)
T 1g7s_A 64 SIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEG 143 (594)
T ss_dssp GGGGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTT
T ss_pred ccccccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccC
Confidence 00112236999999999999999999999999999999999999999999999999999999999999999610 000
Q ss_pred --------CCHHHHHHHHHHHHHHhhhhhhhccCCCCCCceeecc----------cceeecccCccceeeehhhHHHHhh
Q 003378 161 --------VDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPE----------KGTVAFSAGLHGWAFTLTNFAKMYA 222 (824)
Q Consensus 161 --------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~----------~~~v~~~s~~~g~~~~~~~fa~~~~ 222 (824)
...+.+.+.+.+.+.++...+.... +.+. ..++..+|++.|
T Consensus 144 ~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~g--------l~~e~~~~l~~~~~~vpvv~vSA~tG------------- 202 (594)
T 1g7s_A 144 RPFMETFSKQDIQVQQKLDTKVYELVGKLHEEG--------FESERFDRVTDFASQVSIIPISAITG------------- 202 (594)
T ss_dssp CCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTT--------CEEEEGGGCSCTTTEEEEEECCTTTC-------------
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcC--------cchHHHHHHHhccCcceEEEEeccCC-------------
Confidence 1123344444444443333222100 0000 000111111000
Q ss_pred hhcCCChHHHHHHhhcCcccCCCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHH
Q 003378 223 SKFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEK 302 (824)
Q Consensus 223 ~~~~id~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el 302 (824)
.
T Consensus 203 ----------------------------------------------------------------------~--------- 203 (594)
T 1g7s_A 203 ----------------------------------------------------------------------E--------- 203 (594)
T ss_dssp ----------------------------------------------------------------------T---------
T ss_pred ----------------------------------------------------------------------C---------
Confidence 0
Q ss_pred HHhHHHHHHHHHhhhccchHHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCC
Q 003378 303 ELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKG 382 (824)
Q Consensus 303 ~~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g 382 (824)
.+..||+++..++|+|.+. ...+++++|+.++|||+..+++.|
T Consensus 204 -----------------GI~eLl~~I~~~~~~~~~~--------------------~l~~~~~~p~~~~V~~~~~d~g~G 246 (594)
T 1g7s_A 204 -----------------GIPELLTMLMGLAQQYLRE--------------------QLKIEEDSPARGTILEVKEETGLG 246 (594)
T ss_dssp -----------------THHHHHHHHHHHHHHHCSG--------------------GGEECTTSBCEEEEEEEEEETTEE
T ss_pred -----------------CchhHHHHHHhhccccchh--------------------hhccccCCCceeEEEEEEEeCCcE
Confidence 1245666777666655321 012356789999999999999888
Q ss_pred cceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEe--------cCceeeecccc--CCCEEEEeccccc
Q 003378 383 RFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWM--------GKKQETVEDVP--CGNTVAMVGLDQY 452 (824)
Q Consensus 383 ~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~--------G~~~~~v~~a~--AGdIvai~gl~~~ 452 (824)
. ++++||++|+|++||.|++.+. +.. ...||++|+.+. |.+..++++|. ||++|++.||+..
T Consensus 247 ~-v~~~rV~~G~Lk~Gd~v~~~~~----~~~---~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~~~l~~~ 318 (594)
T 1g7s_A 247 M-TIDAVIYDGILRKDDTIAMMTS----KDV---ISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVAPGIDDV 318 (594)
T ss_dssp E-EEEEEEEESEEETTCEEEEEBS----SSE---EEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEECSSCTTB
T ss_pred E-EEEEEEeeCEEeeCCEEEECCC----CCc---eeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEEEcccCCC
Confidence 7 9999999999999999997542 221 125999999873 67788999999 9999999999987
Q ss_pred cccce-eeecCCCCC------ccccccccccCCceEEEEEEeCCCCCHhHHHHHHHHH
Q 003378 453 ITKNA-TLTNEKEVD------AHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRL 503 (824)
Q Consensus 453 ~~~tg-Tl~~~~~~~------~~~~~~~~~~~~Pv~~~aVep~~~~d~~kL~~aL~~L 503 (824)
.+| ||+...+.+ ...+..+... .+.+.+.|.+......++|.++|+++
T Consensus 319 --~~Gd~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vkad~~gs~eal~~~l~~~ 373 (594)
T 1g7s_A 319 --MAGSPLRVVTDPEKVREEILSEIEDIKID-TDEAGVVVKADTLGSLEAVVKILRDM 373 (594)
T ss_dssp --CTTCEEEECSSHHHHHHHHHHHHHTTSCB-CSSSCCEEEESSHHHHHHHHHHHHHT
T ss_pred --CCCCEEEecCCHHHHHHHHHHHHHhcccc-cccccEEEEeCCCCCHHHHHHHHHhC
Confidence 678 888765410 0012233333 67788899999999999999999987
No 18
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.96 E-value=1.4e-29 Score=287.36 Aligned_cols=288 Identities=23% Similarity=0.340 Sum_probs=188.6
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCccccc----------CCc-----eeecCChhhHhHhccceeeceEEEE
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRQDEAERGITIKSTGISLY 70 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~----------~g~-----~~~~D~~~~E~~rgiTi~~~~~~~~ 70 (824)
...++|++ +||+|+|||||+++|++..+.+.... .|. .+++|+.++|++||+|++.....+.
T Consensus 4 k~~~~I~i---iG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~ 80 (435)
T 1jny_A 4 KPHLNLIV---IGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE 80 (435)
T ss_dssp CCEEEEEE---EESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE
T ss_pred CCEEEEEE---EeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe
Confidence 45689999 99999999999999999877665321 121 1468999999999999999887776
Q ss_pred EeechhhhhccccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCC-------cchhHHHHHHHHHhCCC
Q 003378 71 YEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQALGERI 143 (824)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~g-------v~~~t~~~l~~~~~~~~ 143 (824)
+. ++.++|||||||.+|..++.++++.+|++|+|||+.+| +..||++++..+...++
T Consensus 81 ~~----------------~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~ 144 (435)
T 1jny_A 81 TK----------------KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGL 144 (435)
T ss_dssp CS----------------SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTC
T ss_pred cC----------------CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCC
Confidence 64 78999999999999999999999999999999999999 88999999999999998
Q ss_pred c-eEEEEeCCCcchhcccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhh
Q 003378 144 R-PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYA 222 (824)
Q Consensus 144 p-~ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~ 222 (824)
| +|+|+||||+. ..++++ +.++.+.++++..+..+. +.+...++...|++.|++.
T Consensus 145 ~~iivviNK~Dl~----~~~~~~--~~~~~~~~~i~~~~~~~~--------~~~~~~~~i~iSA~~g~~v---------- 200 (435)
T 1jny_A 145 DQLIVAVNKMDLT----EPPYDE--KRYKEIVDQVSKFMRSYG--------FNTNKVRFVPVVAPSGDNI---------- 200 (435)
T ss_dssp TTCEEEEECGGGS----SSTTCH--HHHHHHHHHHHHHHHHTT--------CCCTTCEEEECBTTTTBTT----------
T ss_pred CeEEEEEEcccCC----CccccH--HHHHHHHHHHHHHHHHcC--------CCcCCceEEEeecccCccc----------
Confidence 5 77999999998 632111 123344444444443321 1111123444566544321
Q ss_pred hhcCCChHHHHHHhhcCcccCCCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHH
Q 003378 223 SKFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEK 302 (824)
Q Consensus 223 ~~~~id~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el 302 (824)
+ . .+. . + +|+++
T Consensus 201 -----~--e------------------------------~~~-------------------~-~-~~~~g---------- 212 (435)
T 1jny_A 201 -----T--H------------------------------KSE-------------------N-M-KWYNG---------- 212 (435)
T ss_dssp -----T--B------------------------------CCS-------------------S-C-TTCCS----------
T ss_pred -----c--c------------------------------ccc-------------------c-c-ccccc----------
Confidence 0 0 000 0 0 00000
Q ss_pred HHhHHHHHHHHHhhhccchHHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCC
Q 003378 303 ELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKG 382 (824)
Q Consensus 303 ~~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g 382 (824)
..||+++.. +|.|.. +.+.|+.+.|..++..++.|
T Consensus 213 -------------------~~Ll~~l~~-~~~p~~-------------------------~~~~~~~~~v~~v~~~~~~G 247 (435)
T 1jny_A 213 -------------------PTLEEYLDQ-LELPPK-------------------------PVDKPLRIPIQDVYSISGVG 247 (435)
T ss_dssp -------------------CCHHHHHTT-CCCCCC-------------------------GGGSCCBEEEEEEEEETTTE
T ss_pred -------------------hhHHHHHhc-cCCCCC-------------------------CCCCCeEEEEEEEEEeCCCc
Confidence 135666544 444521 01245544454444445667
Q ss_pred cceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEe--ccccccccce-ee
Q 003378 383 RFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TL 459 (824)
Q Consensus 383 ~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~--gl~~~~~~tg-Tl 459 (824)
. ++++||+||+|++||.|++.+. +. ..+|++|+.. ..++++|.|||+|++. |++..-+++| +|
T Consensus 248 ~-v~~g~v~~G~l~~gd~v~~~p~----~~-----~~~V~~i~~~----~~~~~~a~aG~~v~~~l~g~~~~~i~~Gd~l 313 (435)
T 1jny_A 248 T-VPVGRVESGVLKVGDKIVFMPA----GK-----VGEVRSIETH----HTKMDKAEPGDNIGFNVRGVEKKDIKRGDVV 313 (435)
T ss_dssp E-EEEEECCBSCEETTCEEEEETT----TE-----EEEEEEEEET----TEEESEECTTCEEEEEEESSCGGGCCTTCEE
T ss_pred E-EEEEEEecCeEEcCCEEEECCc----ee-----EEEEEEEEEC----CcEEeEEcCCCEEEEEEecCCHHHcCCccEe
Confidence 6 9999999999999999997642 22 2799999652 4789999999999984 5543333678 88
Q ss_pred ecCC
Q 003378 460 TNEK 463 (824)
Q Consensus 460 ~~~~ 463 (824)
++..
T Consensus 314 ~~~~ 317 (435)
T 1jny_A 314 GHPN 317 (435)
T ss_dssp ECTT
T ss_pred cCCC
Confidence 8764
No 19
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.96 E-value=3.9e-29 Score=292.84 Aligned_cols=288 Identities=20% Similarity=0.253 Sum_probs=173.3
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccc----------cCCc-----eeecCChhhHhHhccceeeceEEEE
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRQDEAERGITIKSTGISLY 70 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~----------~~g~-----~~~~D~~~~E~~rgiTi~~~~~~~~ 70 (824)
...++|++ +||+|+|||||+++|++..+.+... ..|. .+++|..++|+++|+|++.....+.
T Consensus 175 k~~~~I~i---iG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~ 251 (592)
T 3mca_A 175 KPVVHLVV---TGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFE 251 (592)
T ss_dssp CCEEEEEE---ECCSSSTHHHHHHHHHHHHHCC-----------------------------------------------
T ss_pred CCccEEEE---EcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEE
Confidence 46689999 9999999999999999988776543 1121 3588999999999999999988887
Q ss_pred EeechhhhhccccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCc-------chhHHHHHHHHHhCCC
Q 003378 71 YEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-------CVQTETVLRQALGERI 143 (824)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv-------~~~t~~~l~~~~~~~~ 143 (824)
+. ++.++|||||||.+|..++..+++.+|++|+|||+.+|. ..||..++..+...++
T Consensus 252 ~~----------------~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgi 315 (592)
T 3mca_A 252 SD----------------KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGI 315 (592)
T ss_dssp -----------------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSC
T ss_pred eC----------------CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCC
Confidence 75 789999999999999999999999999999999999864 9999999999999999
Q ss_pred c-eEEEEeCCCcchhcccCCHHHHHHHHHHHHHHhhhhh-hhccCCCCCCceeecccceeecccCccceeeehhhHHHHh
Q 003378 144 R-PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIM-ATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMY 221 (824)
Q Consensus 144 p-~ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~ 221 (824)
| +|+|+||||++ +++.+. +..+.+++...+ ..++ +.+...++...|++.|++..-.
T Consensus 316 p~iIvviNKiDl~----~~~~~~----~~~i~~el~~~l~~~~g--------~~~~~~~ii~iSA~~G~gI~e~------ 373 (592)
T 3mca_A 316 SEIVVSVNKLDLM----SWSEDR----FQEIKNIVSDFLIKMVG--------FKTSNVHFVPISAISGTNLIQK------ 373 (592)
T ss_dssp CCEEEEEECGGGG----TTCHHH----HHHHHHHHHHHHTTTSC--------CCGGGEEEEEECSSSCSSSCSC------
T ss_pred CeEEEEEeccccc----cccHHH----HHHHHHHHHHHHHHhhC--------CCccceEEEEEecccCcccccc------
Confidence 8 77899999998 766443 344444444444 2211 1222224566788777643110
Q ss_pred hhhcCCChHHHHHHhhcCcccCCCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHH
Q 003378 222 ASKFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEE 301 (824)
Q Consensus 222 ~~~~~id~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~e 301 (824)
. ...+ .-|
T Consensus 374 ----~--~~~~--~~w---------------------------------------------------------------- 381 (592)
T 3mca_A 374 ----D--SSDL--YKW---------------------------------------------------------------- 381 (592)
T ss_dssp ----C--CCGG--GGT----------------------------------------------------------------
T ss_pred ----c--cccc--ccc----------------------------------------------------------------
Confidence 0 0000 001
Q ss_pred HHHhHHHHHHHHHhhhccchHHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCC
Q 003378 302 KELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDK 381 (824)
Q Consensus 302 l~~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~ 381 (824)
.- ...|++.+..++|.+ .+.+.|+.+.|..++.. ..
T Consensus 382 ----------------~~-g~~Lle~l~~~~pp~--------------------------~~~~~p~r~~v~~v~~~-~~ 417 (592)
T 3mca_A 382 ----------------YK-GPTLLSALDQLVPPE--------------------------KPYRKPLRLSIDDVYRS-PR 417 (592)
T ss_dssp ----------------CC-SCCHHHHHHTSCCCS--------------------------CTTTSCCEEEEEEEEEE-TT
T ss_pred ----------------cc-hHHHHHHHHhhcccc--------------------------ccccccchheeeEEEec-CC
Confidence 00 023566666666632 12457888888888877 55
Q ss_pred CcceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeec-cccCCCEEEE--eccccccccce-
Q 003378 382 GRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVE-DVPCGNTVAM--VGLDQYITKNA- 457 (824)
Q Consensus 382 g~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~-~a~AGdIvai--~gl~~~~~~tg- 457 (824)
|. +..+||.+|+|++||.|.+++.+ . ..+|+.|.. ...+++ +|.|||+|++ .|++..-++.|
T Consensus 418 g~-v~~G~v~~G~l~~Gd~v~i~p~~----~-----~~~V~~i~~----~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~ 483 (592)
T 3mca_A 418 SV-TVTGRVEAGNVQVNQVLYDVSSQ----E-----DAYVKNVIR----NSDPSSTWAVAGDTVTLQLADIEVNQLRPGD 483 (592)
T ss_dssp EE-EEEEEEEESEEETTCEEEETTTT----E-----EEEEEEEEC----SSSCSCCEEETTCEEEEEESSSCGGGCCTTC
T ss_pred eE-EEEEEEeeeeEccCCEEEEccCC----c-----eEEEEEEEE----cCccCcceecCCCEEEEEEccccccccceEE
Confidence 65 88999999999999999986422 2 268888875 346799 9999999985 57765444678
Q ss_pred eeecCCC
Q 003378 458 TLTNEKE 464 (824)
Q Consensus 458 Tl~~~~~ 464 (824)
+||+...
T Consensus 484 vl~~~~~ 490 (592)
T 3mca_A 484 ILSNYEN 490 (592)
T ss_dssp EEECSSS
T ss_pred EeccCCC
Confidence 8887543
No 20
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.96 E-value=1.8e-27 Score=273.66 Aligned_cols=297 Identities=20% Similarity=0.296 Sum_probs=191.7
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccc----------cCCc-----eeecCChhhHhHhccceeeceEEEE
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRQDEAERGITIKSTGISLY 70 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~----------~~g~-----~~~~D~~~~E~~rgiTi~~~~~~~~ 70 (824)
...++|++ +||+|+|||||+++|++..+.+... ..|. .+++|..+.|+++|+|++.....+.
T Consensus 31 k~~~ki~i---iG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~ 107 (483)
T 3p26_A 31 LPHLSFVV---LGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS 107 (483)
T ss_dssp CCEEEEEE---ESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEE
T ss_pred CCceEEEE---ECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEe
Confidence 35689999 9999999999999999998776542 1121 3578999999999999999988877
Q ss_pred EeechhhhhccccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCC-------cchhHHHHHHHHHhCCC
Q 003378 71 YEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQALGERI 143 (824)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~g-------v~~~t~~~l~~~~~~~~ 143 (824)
+. ++.++|||||||.+|...+..+++.+|++|+|||+.+| +..|+.+++..+...++
T Consensus 108 ~~----------------~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~ 171 (483)
T 3p26_A 108 TH----------------RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGI 171 (483)
T ss_dssp CS----------------SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTC
T ss_pred cC----------------CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCC
Confidence 65 78999999999999999999999999999999999998 67899999999998887
Q ss_pred c-eEEEEeCCCcchhcccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhh
Q 003378 144 R-PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYA 222 (824)
Q Consensus 144 p-~ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~ 222 (824)
+ +|+|+||||+. +++... ++++.+++...+..+. +.+...++...|++.|++..-
T Consensus 172 ~~iIvviNK~Dl~----~~~~~~----~~~i~~~~~~~l~~~g--------~~~~~~~~i~iSA~~g~gi~e-------- 227 (483)
T 3p26_A 172 HNLIIAMNKMDNV----DWSQQR----FEEIKSKLLPYLVDIG--------FFEDNINWVPISGFSGEGVYK-------- 227 (483)
T ss_dssp CCEEEEEECGGGG----TTCHHH----HHHHHHHHHHHHHHHT--------CCGGGEEEEECCSSSCTTSSS--------
T ss_pred CcEEEEEECcCcc----cchHHH----HHHHHHHHHHHHHHcC--------CCcccceEEEEeeecCCCccc--------
Confidence 6 77899999998 655322 3333333333333211 112222455567766653310
Q ss_pred hhcCCChHHHHHHhhcCcccCCCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHH
Q 003378 223 SKFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEK 302 (824)
Q Consensus 223 ~~~~id~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el 302 (824)
.. ..+...-| |. +
T Consensus 228 --l~---~~~~~~~w----y~------------------------------------------------g---------- 240 (483)
T 3p26_A 228 --IE---YTDEVRQW----YN------------------------------------------------G---------- 240 (483)
T ss_dssp --SC---CCHHHHHH----CC------------------------------------------------S----------
T ss_pred --cC---cccccccc----cC------------------------------------------------C----------
Confidence 00 00000111 00 0
Q ss_pred HHhHHHHHHHHHhhhccchHHHHHHHHhcCCC--chhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecC-
Q 003378 303 ELMGKALMKRVMQTWLPASSALLEMMIFHLPS--PATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPAS- 379 (824)
Q Consensus 303 ~~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPs--P~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~- 379 (824)
|....+|+.+...+|. |. .+.+.|+.+.|..++..+
T Consensus 241 ----------------~~L~~~L~~i~~~~~~~~p~-------------------------~~~~~p~r~~v~~v~~~~~ 279 (483)
T 3p26_A 241 ----------------PNLMSTLENAAFKISKENEG-------------------------INKDDPFLFSVLEIIPSKK 279 (483)
T ss_dssp ----------------CCHHHHHHHHHHHHHHHHTT-------------------------CCSSSCCEEEEEEEEC---
T ss_pred ----------------CCHHHHHHHHHhhccccccc-------------------------ccCCCceEEEEEEEEccCC
Confidence 0012344444444443 21 124578888888887654
Q ss_pred --CCCcceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEe----cCceeeeccccCCCEEEEe--cccc
Q 003378 380 --DKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWM----GKKQETVEDVPCGNTVAMV--GLDQ 451 (824)
Q Consensus 380 --~~g~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~----G~~~~~v~~a~AGdIvai~--gl~~ 451 (824)
..|. +..+||.+|+|++||.|.+++. +.+ .+|++|.... |....++++|.|||+|++. +++.
T Consensus 280 ~~g~g~-v~~G~v~~G~l~~gd~v~~~p~----~~~-----~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~~~~~ 349 (483)
T 3p26_A 280 TSNDLA-LVSGKLESGSIQPGESLTIYPS----EQS-----CIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYP 349 (483)
T ss_dssp CCSCCE-EEEEEEEESEECTTCEEEEETT----TEE-----EEEEEEEETTTC-----CCEESCEETTCEEEEEEESCCG
T ss_pred cCCCce-EEEEEEecceEccCCEEEEeCC----CCe-----EEEEEEEEcCccccccccccccEECCCCEEEEEEEeccc
Confidence 2455 8999999999999999998642 222 6899998653 4456899999999999983 4322
Q ss_pred ccccce-eeecCC
Q 003378 452 YITKNA-TLTNEK 463 (824)
Q Consensus 452 ~~~~tg-Tl~~~~ 463 (824)
.-++.| +|++.+
T Consensus 350 ~di~rG~vl~~~~ 362 (483)
T 3p26_A 350 EDIQNGDLAASVD 362 (483)
T ss_dssp GGCCTTCEEECTT
T ss_pred ccCCceEEEEcCC
Confidence 223667 888754
No 21
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.95 E-value=8.8e-28 Score=289.91 Aligned_cols=284 Identities=19% Similarity=0.292 Sum_probs=187.1
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +||+|||||||+++|+...........-..+.+|..++|+++|+|++...+.+.+.
T Consensus 294 k~~lnIvI---IGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~------------- 357 (1289)
T 3avx_A 294 KPHVNVGT---IGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP------------- 357 (1289)
T ss_dssp CCEEEEEE---EESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECS-------------
T ss_pred CCeeEEEE---EcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCC-------------
Confidence 45689999 99999999999999976421100000001236788899999999999987776654
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCc-eEEEEeCCCcchhcccCCHH
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQVDGE 164 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p-~ilviNKiD~~~~~~~~~~~ 164 (824)
++.++|||||||.+|..++..+++.+|++|+|||+.+|+..||.++|..+...++| +|+|+||||+. + +.
T Consensus 358 ---~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv----~-d~- 428 (1289)
T 3avx_A 358 ---TRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMV----D-DE- 428 (1289)
T ss_dssp ---SCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTC----C-CH-
T ss_pred ---CEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccc----c-ch-
Confidence 78999999999999999999999999999999999999999999999999989999 57999999998 4 22
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcccCC
Q 003378 165 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 244 (824)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~~~ 244 (824)
+. ++.+.+++...+..++ +.+...++...|++.||.
T Consensus 429 e~---le~i~eEi~elLk~~G--------~~~~~vp~IpvSAktG~n--------------------------------- 464 (1289)
T 3avx_A 429 EL---LELVEMEVRELLSQYD--------FPGDDTPIVRGSALKALE--------------------------------- 464 (1289)
T ss_dssp HH---HHHHHHHHHHHHHHTT--------SCTTTCCEEECCSTTTTT---------------------------------
T ss_pred hh---HHHHHHHHHHHHHhcc--------ccccceeEEEEEeccCCC---------------------------------
Confidence 22 2223333343443211 011111344455543320
Q ss_pred CCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhhhccchHHH
Q 003378 245 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSAL 324 (824)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~L 324 (824)
+ .+-| + + .+..|
T Consensus 465 -----------g------------~~~w--~---------------e----------------------------GI~eL 476 (1289)
T 3avx_A 465 -----------G------------DAEW--E---------------A----------------------------KILEL 476 (1289)
T ss_dssp -----------C------------CHHH--H---------------H----------------------------HHHHH
T ss_pred -----------C------------Cccc--c---------------c----------------------------cchhh
Confidence 0 0001 0 1 12568
Q ss_pred HHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEEc
Q 003378 325 LEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIM 404 (824)
Q Consensus 325 Ld~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~ 404 (824)
++++.+++|.|.. +.++|+.+.|..++..++.|. ++++||++|+|++||.|.++
T Consensus 477 leaL~~~Ip~P~r-------------------------~~d~Pfr~pId~Vf~i~G~Gt-VvtGrV~sGtLkvGD~V~I~ 530 (1289)
T 3avx_A 477 AGFLDSYIPEPER-------------------------AIDKPFLLPIEDVFSISGRGT-VVTGRVERGIIKVGEEVEIV 530 (1289)
T ss_dssp HHHHHHTSCCCCC-------------------------GGGSCCEEECCEEEEETTTEE-EEEEECCBSEEETTCEEEEE
T ss_pred HhHHhhhcCCCcc-------------------------ccccceeeeccccccccCCcE-EEEEEEeccEEecCCEEEEe
Confidence 8888899998831 234788888888887788887 99999999999999999987
Q ss_pred CCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEe--ccccccccce-eeecCC
Q 003378 405 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TLTNEK 463 (824)
Q Consensus 405 ~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~--gl~~~~~~tg-Tl~~~~ 463 (824)
+.+ .. ...+|+.|... ..++++|.|||+|++. |++..-++.| +|++..
T Consensus 531 ps~----~~---~~~kVksI~~~----~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~~~~ 581 (1289)
T 3avx_A 531 GIK----ET---QKSTCTGVEMF----RKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPG 581 (1289)
T ss_dssp SSS----SC---EEEEEEEEECS----SCEESEEETTCEEEEEESSCCGGGCCTTCEEESTT
T ss_pred cCC----Cc---eeEEEEEEeec----CceeeEEecCCcceeEeeecchhcCCcccEEecCC
Confidence 532 10 12688888543 3679999999998875 6644434677 888654
No 22
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.95 E-value=2.1e-27 Score=270.83 Aligned_cols=298 Identities=23% Similarity=0.338 Sum_probs=206.3
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccc----------cCCc-----eeecCChhhHhHhccceeeceEEEE
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRQDEAERGITIKSTGISLY 70 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~----------~~g~-----~~~~D~~~~E~~rgiTi~~~~~~~~ 70 (824)
...++|++ +||+|||||||+++|++..+.+... ..|. .+++|..++|+++|+|++.....+.
T Consensus 5 ~~~~~i~i---iG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~ 81 (458)
T 1f60_A 5 KSHINVVV---IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFE 81 (458)
T ss_dssp CEEEEEEE---EECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEE
T ss_pred CceeEEEE---EcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEe
Confidence 46799999 9999999999999999987665431 1232 1357889999999999999988776
Q ss_pred EeechhhhhccccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcch-------hHHHHHHHHHhCCC
Q 003378 71 YEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-------QTETVLRQALGERI 143 (824)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~-------~t~~~l~~~~~~~~ 143 (824)
+. ++.++|||||||.+|..++..+++.+|++|+|||+.+|+.. ||.+++..+...++
T Consensus 82 ~~----------------~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v 145 (458)
T 1f60_A 82 TP----------------KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGV 145 (458)
T ss_dssp CS----------------SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTC
T ss_pred cC----------------CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCC
Confidence 64 78999999999999999999999999999999999999766 99999999988999
Q ss_pred c-eEEEEeCCCcchhcccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhh
Q 003378 144 R-PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYA 222 (824)
Q Consensus 144 p-~ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~ 222 (824)
| +|+|+||||+. +++.+. ++.+.+++..++..+. +.+...++...|++.|++..-.
T Consensus 146 ~~iivviNK~Dl~----~~~~~~----~~~i~~~~~~~l~~~g--------~~~~~~~~i~vSA~~g~nv~~~------- 202 (458)
T 1f60_A 146 RQLIVAVNKMDSV----KWDESR----FQEIVKETSNFIKKVG--------YNPKTVPFVPISGWNGDNMIEA------- 202 (458)
T ss_dssp CEEEEEEECGGGG----TTCHHH----HHHHHHHHHHHHHHHT--------CCGGGCCEEECCTTTCBTTTBC-------
T ss_pred CeEEEEEEccccc----cCCHHH----HHHHHHHHHHHHHHcC--------CCccCceEEEeecccCcCcccc-------
Confidence 7 77899999998 665432 2333344444433221 1111224556788777643100
Q ss_pred hhcCCChHHHHHHhhcCcccCCCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHH
Q 003378 223 SKFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEK 302 (824)
Q Consensus 223 ~~~~id~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el 302 (824)
.. ..-| |.. |......+ .++
T Consensus 203 -------~~--~~~~----~~~----~~~~~~tg---------------------------------------~~~---- 222 (458)
T 1f60_A 203 -------TT--NAPW----YKG----WEKETKAG---------------------------------------VVK---- 222 (458)
T ss_dssp -------CS--SCTT----CCC----EEEECSSS---------------------------------------EEE----
T ss_pred -------cc--cCch----hhc----cccccccc---------------------------------------ccc----
Confidence 00 0011 110 11000000 000
Q ss_pred HHhHHHHHHHHHhhhccchHHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCC
Q 003378 303 ELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKG 382 (824)
Q Consensus 303 ~~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g 382 (824)
...|++++.. +|.|. .+.+.|+.++|..++..++.|
T Consensus 223 ------------------~~~Ll~~l~~-~~~p~-------------------------~~~~~p~r~~i~~v~~~~g~G 258 (458)
T 1f60_A 223 ------------------GKTLLEAIDA-IEQPS-------------------------RPTDKPLRLPLQDVYKIGGIG 258 (458)
T ss_dssp ------------------ESSHHHHHHT-SCCCC-------------------------CCTTSCCEEEEEEEEEETTTE
T ss_pred ------------------hHHHHHHhhc-cCCCc-------------------------ccCCCCcEEEEEEEEEeCCCc
Confidence 0134555433 45551 124578888888888888888
Q ss_pred cceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEe--ccccccccce-ee
Q 003378 383 RFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TL 459 (824)
Q Consensus 383 ~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~--gl~~~~~~tg-Tl 459 (824)
. ++.+||.+|+++.||+|.+++.+ . ..+|.+|... ..++++|.|||++++. |++..-.+.| +|
T Consensus 259 ~-v~~G~v~~G~l~~gd~v~~~p~~----~-----~~~V~~i~~~----~~~~~~a~aG~~v~i~l~gi~~~~i~rG~vl 324 (458)
T 1f60_A 259 T-VPVGRVETGVIKPGMVVTFAPAG----V-----TTEVKSVEMH----HEQLEQGVPGDNVGFNVKNVSVKEIRRGNVC 324 (458)
T ss_dssp E-EEEEECCBSCBCTTCEEEEETTT----E-----EEEEEEEEET----TEECSCBCTTCEEEEEESSCCTTTSCTTCEE
T ss_pred E-EEEEEEeCCeEcCCCEEEECCCC----c-----eEEEeEEEEC----CeEEEEEcCCCEEEEEEcCCcccccCceeEE
Confidence 7 99999999999999999986531 2 2688888752 3689999999998874 6643333567 88
Q ss_pred ecCC
Q 003378 460 TNEK 463 (824)
Q Consensus 460 ~~~~ 463 (824)
++..
T Consensus 325 ~~~~ 328 (458)
T 1f60_A 325 GDAK 328 (458)
T ss_dssp EETT
T ss_pred ecCC
Confidence 7754
No 23
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.95 E-value=2.6e-27 Score=270.72 Aligned_cols=289 Identities=20% Similarity=0.290 Sum_probs=169.0
Q ss_pred CceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccc----------cCCc-----eeecCChhhHhHhccceeeceEEE
Q 003378 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRQDEAERGITIKSTGISL 69 (824)
Q Consensus 5 ~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~----------~~g~-----~~~~D~~~~E~~rgiTi~~~~~~~ 69 (824)
....++|++ +||+|||||||+++|++.+|.+... ..|+ .+.+|..++|+++|+|++.....+
T Consensus 40 ~k~~~~i~i---iG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~ 116 (467)
T 1r5b_A 40 GKEHVNIVF---IGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYF 116 (467)
T ss_dssp CCEEEEEEE---EECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEE
T ss_pred CCCeeEEEE---EECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEE
Confidence 356789999 9999999999999999988876431 1232 346899999999999999988777
Q ss_pred EEeechhhhhccccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCc-------chhHHHHHHHHHhCC
Q 003378 70 YYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-------CVQTETVLRQALGER 142 (824)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv-------~~~t~~~l~~~~~~~ 142 (824)
.+. ++.++|||||||.+|..++.++++.+|++|+|||+.+|+ ..||++++..+...+
T Consensus 117 ~~~----------------~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~ 180 (467)
T 1r5b_A 117 ETE----------------HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQG 180 (467)
T ss_dssp ECS----------------SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred ecC----------------CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcC
Confidence 765 789999999999999999999999999999999999997 479999999999999
Q ss_pred Cc-eEEEEeCCCcchhcccCCHHHHHHHHHHHHHHhhhhhhhc-cCCCCCCceeec-ccceeecccCccceeeehhhHHH
Q 003378 143 IR-PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATY-EDPLLGDVQVYP-EKGTVAFSAGLHGWAFTLTNFAK 219 (824)
Q Consensus 143 ~p-~ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~p-~~~~v~~~s~~~g~~~~~~~fa~ 219 (824)
+| +|+|+||||+. ..++++ +.++.+.+++...+..+ . +.+ ...++...|++.|++..-
T Consensus 181 vp~iivviNK~Dl~----~~~~~~--~~~~~i~~e~~~~l~~~~g--------~~~~~~~~~i~vSA~~g~~i~~----- 241 (467)
T 1r5b_A 181 INHLVVVINKMDEP----SVQWSE--ERYKECVDKLSMFLRRVAG--------YNSKTDVKYMPVSAYTGQNVKD----- 241 (467)
T ss_dssp CSSEEEEEECTTST----TCSSCH--HHHHHHHHHHHHHHHHHHC--------CCHHHHEEEEECBTTTTBTTSS-----
T ss_pred CCEEEEEEECccCC----CccccH--HHHHHHHHHHHHHHHHhcC--------CCccCCceEEeccccccccccc-----
Confidence 98 78999999996 433211 12333334444444321 1 010 011344457765543200
Q ss_pred HhhhhcCCChHHHHHHhhcCcccCCCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCH
Q 003378 220 MYASKFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKS 299 (824)
Q Consensus 220 ~~~~~~~id~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~ 299 (824)
+ + +.. ..|
T Consensus 242 ---------l-------~-----~~~----------------------~~~----------------------------- 249 (467)
T 1r5b_A 242 ---------R-------V-----DSS----------------------VCP----------------------------- 249 (467)
T ss_dssp ---------C-------C-----CTT----------------------TCS-----------------------------
T ss_pred ---------c-------c-----ccc----------------------cCc-----------------------------
Confidence 0 0 000 000
Q ss_pred HHHHHhHHHHHHHHHhhhccchHHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecC
Q 003378 300 EEKELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPAS 379 (824)
Q Consensus 300 ~el~~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~ 379 (824)
|... ..|++.+ +.+|.|.. +.++|+.+.|..++..
T Consensus 250 -----------------w~~g-~~L~~~l-~~i~~~~~-------------------------~~~~p~~~~v~~~~~~- 284 (467)
T 1r5b_A 250 -----------------WYQG-PSLLEYL-DSMTHLER-------------------------KVNAPFIMPIASKYKD- 284 (467)
T ss_dssp -----------------SCCS-CCHHHHH-HHCCCCHH-------------------------HHTSCCEEECCEEEES-
T ss_pred -----------------cccc-hhHHHHH-HhCCCCcC-------------------------CCCCCcEEEEEEEEeC-
Confidence 0000 0123222 33666621 1246788888877653
Q ss_pred CCCcceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEE--eccccccccce
Q 003378 380 DKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA 457 (824)
Q Consensus 380 ~~g~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai--~gl~~~~~~tg 457 (824)
.|. ++++||.+|+|++||.|.+++. +. ..+|.+|+.. ...++++|.|||+|++ .| +....+.|
T Consensus 285 -~G~-v~~G~v~~G~l~~gd~v~~~p~----~~-----~~~V~~i~~~---~~~~~~~a~aG~~v~i~l~g-~~~~i~rG 349 (467)
T 1r5b_A 285 -LGT-ILEGKIEAGSIKKNSNVLVMPI----NQ-----TLEVTAIYDE---ADEEISSSICGDQVRLRVRG-DDSDVQTG 349 (467)
T ss_dssp -SSE-EEEEECCBSEEETTEEEEEETT----TE-----EEEEEEEECT---TCCEESEEETTCEEEEEEES-CCTTCCTT
T ss_pred -CCe-EEEEEEeeeEEeeCCEEEEccC----Ce-----eEEEEEEecc---CCcEeeEEcCCCEEEEEEec-cHhhCCce
Confidence 565 9999999999999999998642 11 2678888642 2578999999999998 56 33223667
Q ss_pred -eeecCC
Q 003378 458 -TLTNEK 463 (824)
Q Consensus 458 -Tl~~~~ 463 (824)
+|++..
T Consensus 350 ~vl~~~~ 356 (467)
T 1r5b_A 350 YVLTSTK 356 (467)
T ss_dssp CEEECSS
T ss_pred EEEeCCC
Confidence 888754
No 24
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.95 E-value=6.1e-27 Score=265.80 Aligned_cols=287 Identities=21% Similarity=0.207 Sum_probs=189.3
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCccccc----------CCce-------eecCChhhHhHhccceeeceEE
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEV----------AGDV-------RMTDTRQDEAERGITIKSTGIS 68 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~----------~g~~-------~~~D~~~~E~~rgiTi~~~~~~ 68 (824)
...++|++ +||+|||||||+++|++..+.+.... .|.+ ..+|..++|++||+|++.+...
T Consensus 22 ~~~~~i~i---iG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~ 98 (434)
T 1zun_B 22 KEMLRFLT---CGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY 98 (434)
T ss_dssp CEEEEEEE---ECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE
T ss_pred CCceEEEE---EECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeE
Confidence 45689999 99999999999999998876553321 1211 2478899999999999988777
Q ss_pred EEEeechhhhhccccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCc-eEE
Q 003378 69 LYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVL 147 (824)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p-~il 147 (824)
+.+. ++.++|||||||.+|..++..+++.+|++|+|||+.+|+..||.+++..+...++| +|+
T Consensus 99 ~~~~----------------~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIv 162 (434)
T 1zun_B 99 FSTA----------------KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVV 162 (434)
T ss_dssp EECS----------------SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEE
T ss_pred eecC----------------CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEE
Confidence 7664 78999999999999999999999999999999999999999999999999888886 678
Q ss_pred EEeCCCcchhcccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCC
Q 003378 148 TVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGV 227 (824)
Q Consensus 148 viNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~i 227 (824)
|+||+|+. .++.+. +..+.+++..++..++. .....++...|++.|++..-- +.
T Consensus 163 viNK~Dl~----~~~~~~----~~~i~~~~~~~~~~~g~--------~~~~~~~i~vSA~~g~gi~~~---------~~- 216 (434)
T 1zun_B 163 AINKMDLN----GFDERV----FESIKADYLKFAEGIAF--------KPTTMAFVPMSALKGDNVVNK---------SE- 216 (434)
T ss_dssp EEECTTTT----TSCHHH----HHHHHHHHHHHHHTTTC--------CCSEEEEEECCTTTCTTTSSC---------CT-
T ss_pred EEEcCcCC----cccHHH----HHHHHHHHHHHHHHhCC--------CccCceEEEEeccCCCCcccc---------cc-
Confidence 99999998 665332 23333344444332210 001113445577655432000 00
Q ss_pred ChHHHHHHhhcCcccCCCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHH
Q 003378 228 DESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGK 307 (824)
Q Consensus 228 d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~ 307 (824)
..-| |+ . ..
T Consensus 217 ------~~~w----~~-------------------------------------g-------------~~----------- 225 (434)
T 1zun_B 217 ------RSPW----YA-------------------------------------G-------------QS----------- 225 (434)
T ss_dssp ------TCTT----CC-------------------------------------S-------------CC-----------
T ss_pred ------cCcc----cc-------------------------------------C-------------ch-----------
Confidence 0001 00 0 00
Q ss_pred HHHHHHHhhhccchHHHHHHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeE
Q 003378 308 ALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAF 387 (824)
Q Consensus 308 ~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~ 387 (824)
...+|+ .+|.|. .+.+.|+.+.|..++.....++ ...
T Consensus 226 -------------L~~~l~----~i~~~~-------------------------~~~~~~~~~~v~~v~~~~~~~~-g~~ 262 (434)
T 1zun_B 226 -------------LMEILE----TVEIAS-------------------------DRNYTDLRFPVQYVNRPNLNFR-GFA 262 (434)
T ss_dssp -------------TTHHHH----HSCCTT-------------------------CCCSSSCEEECCEEECSSSSCC-EEE
T ss_pred -------------HHHHHh----cCCCcc-------------------------cCCCCCcEEEEEEEeccCCCce-EEE
Confidence 001222 235441 1234677777776655444454 678
Q ss_pred EEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCC
Q 003378 388 GRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKE 464 (824)
Q Consensus 388 ~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~ 464 (824)
+||.+|+|++||.|.+++. +. ..+|++|.... .++++|.|||++++...+..-.+.| +|++...
T Consensus 263 G~v~~G~l~~gd~v~~~p~----~~-----~~~V~~i~~~~----~~~~~a~aG~~v~~~l~~~~~i~~G~~l~~~~~ 327 (434)
T 1zun_B 263 GTLASGIVHKGDEIVVLPS----GK-----SSRVKSIVTFE----GELEQAGPGQAVTLTMEDEIDISRGDLLVHADN 327 (434)
T ss_dssp EECCBSCEETTCEEEETTT----CC-----EEEEEEEEETT----EEESEECTTCEEEEEESSCCCCCTTCEEEETTS
T ss_pred EEEecceEeCCCEEEEecC----Ce-----EEEEEEEEEcC----cceeEecCCCEEEEEeCCccccCCccEEECCCC
Confidence 9999999999999998642 22 26899998753 4799999999999986543323567 8887543
No 25
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.95 E-value=5.5e-26 Score=256.22 Aligned_cols=133 Identities=26% Similarity=0.304 Sum_probs=103.4
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccc--
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG-- 83 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~-- 83 (824)
...++|++ +||+|||||||+++|+ | ...|..++|+++|+|++.+...+.+...+... +...
T Consensus 8 ~~~~~I~i---iG~~~~GKSTLi~~L~-----------g--~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~-~y~~~~ 70 (410)
T 1kk1_A 8 QAEVNIGM---VGHVDHGKTTLTKALT-----------G--VWTDTHSEELRRGITIKIGFADAEIRRCPNCG-RYSTSP 70 (410)
T ss_dssp SEEEEEEE---ECSTTSSHHHHHHHHH-----------T--CCCC--CGGGGSCSSSCCEEEEEEEEECTTTC-CEESSS
T ss_pred CCccEEEE---ECCCCCCHHHHHHHHh-----------C--CccccChhhhcCCcEEEEeeeeeecccccccc-cccccc
Confidence 45689999 9999999999999993 3 23567788999999999887776663100000 0000
Q ss_pred --ccCCC----ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCc-chhHHHHHHHHHhCCC-ceEEEEeCCCcc
Q 003378 84 --ERQGN----EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQTETVLRQALGERI-RPVLTVNKMDRC 155 (824)
Q Consensus 84 --~~~~~----~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv-~~~t~~~l~~~~~~~~-p~ilviNKiD~~ 155 (824)
+..+. .+.++|||||||.+|..++.+++..+|++|+|||+.+|+ +.||.+++..+...++ |+|+|+||||+.
T Consensus 71 ~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~ 150 (410)
T 1kk1_A 71 VCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELV 150 (410)
T ss_dssp BCTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGS
T ss_pred cccccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCC
Confidence 00011 278999999999999999999999999999999999998 9999999988887777 567889999998
No 26
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.6e-27 Score=276.95 Aligned_cols=297 Identities=20% Similarity=0.297 Sum_probs=205.0
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccc----------cCCc-----eeecCChhhHhHhccceeeceEEEE
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRQDEAERGITIKSTGISLY 70 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~----------~~g~-----~~~~D~~~~E~~rgiTi~~~~~~~~ 70 (824)
...++|++ +||+|+|||||+++|++..+.+... ..|. .+++|..+.|+++|+|++.....+.
T Consensus 165 k~~lkV~i---vG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~ 241 (611)
T 3izq_1 165 LPHLSFVV---LGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS 241 (611)
T ss_dssp CCCCEEEE---ECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEE
T ss_pred CCceEEEE---EECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEe
Confidence 45689999 9999999999999999887766542 1222 3468899999999999999988887
Q ss_pred EeechhhhhccccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCC-------cchhHHHHHHHHHhCCC
Q 003378 71 YEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQALGERI 143 (824)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~g-------v~~~t~~~l~~~~~~~~ 143 (824)
+. ++.++|||||||.+|...+..+++.+|++|+|||+.+| +..||..++..+...++
T Consensus 242 ~~----------------~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi 305 (611)
T 3izq_1 242 TH----------------RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGI 305 (611)
T ss_dssp CS----------------SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTC
T ss_pred cC----------------CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCC
Confidence 75 78999999999999999999999999999999999988 57899999999999998
Q ss_pred c-eEEEEeCCCcchhcccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhh
Q 003378 144 R-PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYA 222 (824)
Q Consensus 144 p-~ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~ 222 (824)
| +|+|+||||+. .++... +.++.+++...+..++ +.+...++...|++.|.+..-
T Consensus 306 ~~iIVVvNKiDl~----~~~~~~----~~ei~~~l~~~l~~~g--------~~~~~~~~i~vSA~tG~gI~e-------- 361 (611)
T 3izq_1 306 HNLIIAMNKMDNV----DWSQQR----FEEIKSKLLPYLVDIG--------FFEDNINWVPISGFSGEGVYK-------- 361 (611)
T ss_dssp CEEEEEEECTTTT----TTCHHH----HHHHHHHHHHHHHHHT--------CCGGGCEEEECCTTTCTTTSS--------
T ss_pred CeEEEEEeccccc----chhHHH----HHHHHHHHHHHHHhhc--------ccccCccEEeeecccCCCccc--------
Confidence 7 77899999998 654322 3333333443333211 112122455567766643200
Q ss_pred hhcCCChHHHHHHhhcCcccCCCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHH
Q 003378 223 SKFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEK 302 (824)
Q Consensus 223 ~~~~id~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el 302 (824)
.. . .....-| |. .
T Consensus 362 --l~--~-~~~~~~W----y~--------g-------------------------------------------------- 374 (611)
T 3izq_1 362 --IE--Y-TDEVRQW----YN--------G-------------------------------------------------- 374 (611)
T ss_dssp --CT--T-SCTTCCS----CC--------S--------------------------------------------------
T ss_pred --cC--c-ccccccc----cc--------C--------------------------------------------------
Confidence 00 0 0000001 00 0
Q ss_pred HHhHHHHHHHHHhhhccchHHHHHHHHhcCCC--chhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecC-
Q 003378 303 ELMGKALMKRVMQTWLPASSALLEMMIFHLPS--PATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPAS- 379 (824)
Q Consensus 303 ~~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPs--P~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~- 379 (824)
|....+|+.+...+|. | ..+.+.|+.+.|..++..+
T Consensus 375 ----------------~~L~~~L~~l~~~~p~~~p-------------------------~~~~~~p~r~~V~~v~~~~~ 413 (611)
T 3izq_1 375 ----------------PNLMSTLENAAFKISKENE-------------------------GINKDDPFLFSVLEIIPSKK 413 (611)
T ss_dssp ----------------CCHHHHHTTSCCCCCCSSS-------------------------CCSCCSCCEEECCEEECCSS
T ss_pred ----------------CcHHHHHHHHhhcccccCc-------------------------ccccccchhhheeeeeccCc
Confidence 0012334444334443 2 1134678888888877655
Q ss_pred --CCCcceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEe----cCceeeeccccCCCEEEE--ecccc
Q 003378 380 --DKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWM----GKKQETVEDVPCGNTVAM--VGLDQ 451 (824)
Q Consensus 380 --~~g~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~----G~~~~~v~~a~AGdIvai--~gl~~ 451 (824)
..|. ++.+||.+|+|++||.|.+++.+ .+ .+|++|.... |..+.++++|.|||+|++ .|++.
T Consensus 414 ~~g~g~-v~~G~V~~G~lk~Gd~v~~~p~~----~~-----~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~~~~~ 483 (611)
T 3izq_1 414 TSNDLA-LVSGKLESGSIQPGESLTIYPSE----QS-----CIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYP 483 (611)
T ss_dssp SCSSSS-EEEEEEEESEECTTCEEEETTTT----EE-----EEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEESSCCT
T ss_pred cCCCee-EEEEEEEeceeccCCEEEEecCC----ce-----EEEEEEEEcccccccccccccceecCCCcceEEeeeccH
Confidence 3455 89999999999999999986432 22 6889988653 556789999999999998 35432
Q ss_pred ccccce-eeecCC
Q 003378 452 YITKNA-TLTNEK 463 (824)
Q Consensus 452 ~~~~tg-Tl~~~~ 463 (824)
.-++.| +||+..
T Consensus 484 ~di~rGdvl~~~~ 496 (611)
T 3izq_1 484 EDIQNGDLAASVD 496 (611)
T ss_dssp TSCCTTCEEBCST
T ss_pred hhCcceEEccCCC
Confidence 223667 888754
No 27
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.94 E-value=1.8e-26 Score=255.57 Aligned_cols=101 Identities=15% Similarity=0.169 Sum_probs=93.8
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
+|++ +||+|+|||||+++|+ +||+|++.+...+.+. +
T Consensus 23 ~i~i---iG~~d~GKSTL~~~L~------------------------~~giTi~~~~~~~~~~----------------~ 59 (370)
T 2elf_A 23 NVAI---IGTEKSGRTSLAANLG------------------------KKGTSSDITMYNNDKE----------------G 59 (370)
T ss_dssp EEEE---EESTTSSHHHHHHTTS------------------------EEEEESSSEEEEECSS----------------S
T ss_pred EEEE---ECCCCCCHHHHHHHHH------------------------hCCEEEEeeEEEEecC----------------C
Confidence 8999 9999999999999993 4689999888777664 6
Q ss_pred eeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCce-EEEEe-CCCc
Q 003378 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVN-KMDR 154 (824)
Q Consensus 90 ~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~-ilviN-KiD~ 154 (824)
+.++|||||||.+|..++..+++.+|+||+||| .+|+..||+++|..+...++|. |+|+| |||+
T Consensus 60 ~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 60 RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST 125 (370)
T ss_dssp SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS
T ss_pred eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC
Confidence 789999999999999999999999999999999 9999999999999999999998 89999 9997
No 28
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.93 E-value=5.7e-25 Score=247.65 Aligned_cols=133 Identities=23% Similarity=0.292 Sum_probs=97.4
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccc--
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG-- 83 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~-- 83 (824)
...++|++ +||+|||||||+++|. | ...|..++|+++|+|+......+.+...+. ..+...
T Consensus 6 ~~~~~I~i---iG~~d~GKSTLi~~L~-----------g--~~~~~~~~e~~~giTi~~~~~~~~~~~~~~-~~~y~~~~ 68 (408)
T 1s0u_A 6 QAEVNIGM---VGHVDHGKTSLTKALT-----------G--VWTDRHSEELRRGISIRLGYADCEIRKCPQ-CGTYTTKP 68 (408)
T ss_dssp CCCEEEEE---ESCTTSSHHHHHHHHH-----------S--CCCCC-------CCCCCCEEEEEEEEECTT-TCCEESSS
T ss_pred CCceEEEE---EcCCCCCHHHHHHHHh-----------C--CccccCcccccCCcEEEecccccccccccc-cccccccc
Confidence 35689999 9999999999999993 3 235677889999999988876655421000 000000
Q ss_pred --ccCCC----ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCc-chhHHHHHHHHHhCCC-ceEEEEeCCCcc
Q 003378 84 --ERQGN----EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQTETVLRQALGERI-RPVLTVNKMDRC 155 (824)
Q Consensus 84 --~~~~~----~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv-~~~t~~~l~~~~~~~~-p~ilviNKiD~~ 155 (824)
+..+. .+.++|||||||.+|..++.+++..+|++|+|||+.+|+ ..||.+++..+...++ |+|+|+||+|+.
T Consensus 69 ~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~ 148 (408)
T 1s0u_A 69 RCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLV 148 (408)
T ss_dssp BCTTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSS
T ss_pred cccccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCC
Confidence 00011 278999999999999999999999999999999999998 8999999988887777 577999999997
No 29
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.93 E-value=3.5e-27 Score=268.78 Aligned_cols=300 Identities=20% Similarity=0.235 Sum_probs=203.0
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.++.+|++ +||+|||||||+++|+...-. .+ ..+|+|++.....+.|.
T Consensus 2 ~R~~~V~I---vGhvd~GKTTLl~~L~~~~v~-----~~-----------e~~GIT~~i~~~~v~~~------------- 49 (501)
T 1zo1_I 2 PRAPVVTI---MGHVDHGKTSLLEYIRSTKVA-----SG-----------EAGGITQHIGAYHVETE------------- 49 (501)
T ss_dssp CCCCCEEE---EESTTSSSHHHHHHHHHHHHS-----BT-----------TBCCCCCCSSCCCCCTT-------------
T ss_pred CCCeEEEE---ECCCCCCHHHHHHHHHcCCCc-----cc-----------cCCCeeEeEEEEEEEEC-------------
Confidence 46788999 999999999999999653211 11 12678887776555443
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCHHH
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 165 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~ 165 (824)
++.++|||||||.+|..++.++++.+|++|+|||+.+|+.+||.++|..+...++|+|+++||||++ ++++++
T Consensus 50 ---~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~----~~~~~~ 122 (501)
T 1zo1_I 50 ---NGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKP----EADPDR 122 (501)
T ss_dssp ---SSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSS----TTCCCC
T ss_pred ---CEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEecccc----ccCHHH
Confidence 6789999999999999999999999999999999999999999999999999999999999999998 654211
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCceeecc----cceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcc
Q 003378 166 AYQTFQKVIENANVIMATYEDPLLGDVQVYPE----KGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENF 241 (824)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~----~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~ 241 (824)
+...+..+ .+.|. ..++...|++.|++
T Consensus 123 -----------v~~~l~~~--------~~~~~~~~~~~~~v~vSAktG~g------------------------------ 153 (501)
T 1zo1_I 123 -----------VKNELSQY--------GILPEEWGGESQFVHVSAKAGTG------------------------------ 153 (501)
T ss_dssp -----------TTCCCCCC--------CCCTTCCSSSCEEEECCTTTCTT------------------------------
T ss_pred -----------HHHHHHHh--------hhhHHHhCCCccEEEEeeeeccC------------------------------
Confidence 11001000 00000 00122223322210
Q ss_pred cCCCCCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhhhccch
Q 003378 242 FDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPAS 321 (824)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~ 321 (824)
+
T Consensus 154 -----------------------------------------------------I-------------------------- 154 (501)
T 1zo1_I 154 -----------------------------------------------------I-------------------------- 154 (501)
T ss_dssp -----------------------------------------------------C--------------------------
T ss_pred -----------------------------------------------------c--------------------------
Confidence 1
Q ss_pred HHHHHHHHhcC--CCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEEeeeecCCC
Q 003378 322 SALLEMMIFHL--PSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGL 399 (824)
Q Consensus 322 ~~LLd~i~~~l--PsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~ 399 (824)
..|++.+.... +.+ ..+++.|+.++|++.+.+++.|. ++++||++|+|++||
T Consensus 155 ~eLle~I~~~~~~~~~-------------------------~~~~~~~~~~~V~e~~~d~g~G~-v~~~~V~~Gtlk~Gd 208 (501)
T 1zo1_I 155 DELLDAILLQAEVLEL-------------------------KAVRKGMASGAVIESFLDKGRGP-VATVLVREGTLHKGD 208 (501)
T ss_dssp TTHHHHTTTTCCCSTT-------------------------TSCCCSBCEEEEEEEEECSSSSE-EEEEEEEESBCCTTC
T ss_pred chhhhhhhhhhhhhcc-------------------------ccccccccccceEEEEEeCCcEE-EEEEEEEeeEEecCC
Confidence 11222222110 111 12356788999999999888887 999999999999999
Q ss_pred EEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCCC-Ccc---------
Q 003378 400 KVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEV-DAH--------- 468 (824)
Q Consensus 400 ~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~~-~~~--------- 468 (824)
.+.+.+ .. .+|..++ +....++++|.||+.+.+.|++... ..| +++...+. .+.
T Consensus 209 ~v~~g~------~~-----~kVr~i~---~~~g~~v~~a~~g~~V~i~gl~~~~-~~Gd~~~~~~~~~~a~~~~~~r~~~ 273 (501)
T 1zo1_I 209 IVLCGF------EY-----GRVRAMR---NELGQEVLEAGPSIPVEILGLSGVP-AAGDEVTVVRDEKKAREVALYRQGK 273 (501)
T ss_dssp EEEEEB------SS-----CEEEEEC---CTTTTSEEEECCSSCSSSEEECSCC-CTTEEEEEECSSCTTBCSSCBTTCC
T ss_pred EEEEcc------ce-----eEEEEEE---ecCCCcCcEeccCCcEEEeCCCCCC-CCCCEEEecCCHHHHHHHHHHHHHH
Confidence 998521 11 3555544 4444578999999999999988742 346 55432210 000
Q ss_pred ------------cccc----ccccCCceEEEEEEeCCCCCHhHHHHHHHHHHhcCCceEEE
Q 003378 469 ------------PIRA----MKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCS 513 (824)
Q Consensus 469 ------------~~~~----~~~~~~Pv~~~aVep~~~~d~~kL~~aL~~L~~eDPsl~v~ 513 (824)
.+.. +.....+.+.+.|.+......++|.++|.+|..+++.+.+.
T Consensus 274 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ivkad~~gs~ea~~~~l~~~~~~~~~~~v~ 334 (501)
T 1zo1_I 274 FREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKII 334 (501)
T ss_dssp CCSHHHHHHHHHHHSSTTTSCSSCCCCCCCCBCCCSCHHHHHHHHHHHTTTTCCCSBCCCC
T ss_pred HHHHHHhhhhhhcHHHHHhhhhccCCceEEEEEEECCcCCHHHHHHHHHhhcccccceEEE
Confidence 1111 22112456888889999999999999999998887777664
No 30
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.92 E-value=1.2e-25 Score=257.58 Aligned_cols=122 Identities=32% Similarity=0.395 Sum_probs=93.8
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
-+.++|++ +||+|||||||+++|+... ....+|..++|+++|+|++.....+.+.
T Consensus 17 m~~~~I~i---iG~~d~GKSTLi~~L~~~~---------~~~~~d~~~~e~~~GiTi~~~~~~~~~~------------- 71 (482)
T 1wb1_A 17 FKNINLGI---FGHIDHGKTTLSKVLTEIA---------STSAHDKLPESQKRGITIDIGFSAFKLE------------- 71 (482)
T ss_dssp CEEEEEEE---EECTTSSHHHHHHHHHTTC-----------------------------CCCEEEET-------------
T ss_pred CCCCEEEE---ECCCCChHHHHHHHHHCCC---------cccccccccccccCccEEecceEEEEEC-------------
Confidence 45789999 9999999999999994221 1245788899999999999988887775
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
++.++|||||||.+|..++..+++.+|++|+|||+.+|++.||.+++..+...++|.|+|+||||+.
T Consensus 72 ---~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~ 138 (482)
T 1wb1_A 72 ---NYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNA 138 (482)
T ss_dssp ---TEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSS
T ss_pred ---CEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 7899999999999999999999999999999999999999999999999999999999999999997
No 31
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.91 E-value=6.8e-24 Score=238.49 Aligned_cols=133 Identities=17% Similarity=0.157 Sum_probs=94.0
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCc--eeecCChhhHhHhccceeeceEEEEEeechhhhhcccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGD--VRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG 83 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~--~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 83 (824)
...++|++ +||+|||||||+++|+....... .|. .+.......+..++++.......+.+.
T Consensus 6 ~~~~~I~v---vG~~~~GKSTLi~~L~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 68 (403)
T 3sjy_A 6 QPEVNIGV---VGHVDHGKTTLVQAITGIWTSKK---LGYAETNIGVCESCKKPEAYVTEPSCKSCGSD----------- 68 (403)
T ss_dssp CCCCEEEE---ECSTTSSHHHHHHHHHSCCCCSS---SEEEEEEEEECTTSCTTTTEESSSCCGGGTCC-----------
T ss_pred CCCcEEEE---ECCCCCCHHHHHHHHhCcccccc---cCccccceeeccccccccceeccccccccccc-----------
Confidence 45689999 99999999999999954221110 111 111111222334455443321111110
Q ss_pred ccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCc-chhHHHHHHHHHhCCC-ceEEEEeCCCcc
Q 003378 84 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQTETVLRQALGERI-RPVLTVNKMDRC 155 (824)
Q Consensus 84 ~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv-~~~t~~~l~~~~~~~~-p~ilviNKiD~~ 155 (824)
........++|||||||.+|..++..+++.+|++|+|+|+.+|. ..||.+++..+...++ |+|+|+||+|+.
T Consensus 69 ~~~~~~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~ 142 (403)
T 3sjy_A 69 DEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVV 142 (403)
T ss_dssp SCCEEEEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGS
T ss_pred ccccccceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECcccc
Confidence 00112378999999999999999999999999999999999998 9999999998888776 678999999997
No 32
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.91 E-value=1.8e-25 Score=256.68 Aligned_cols=258 Identities=21% Similarity=0.251 Sum_probs=175.9
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
+++.+|++ +||+|||||||+++|....-.. +...|+|.+.....+.+.
T Consensus 2 ~r~pkV~I---vG~~~vGKTSLl~~L~~~~~~~----------------~~~~giT~~i~~~~v~~~------------- 49 (537)
T 3izy_P 2 PRSPVVTI---MGHVDHGKTTLLDKLRKTQVAA----------------MEAGGITQHIGAFLVSLP------------- 49 (537)
T ss_dssp CCCCBCEE---EESTTTTHHHHHHHHHHHHHHH----------------SSSCCBCCCTTSCCBCSS-------------
T ss_pred CCCCEEEE---ECCCCCCHHHHHHHHhCCCccc----------------ccCCceeEEEeEEEEEeC-------------
Confidence 35678899 9999999999999996433211 112356666655444332
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCCHHH
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 165 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~ 165 (824)
++..++|||||||.+|...+.++++.+|++|+|+|+.+|+.+||..+|..+...++|+|+|+||+|++ +++++.
T Consensus 50 --~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~----~~~~~~ 123 (537)
T 3izy_P 50 --SGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKA----EADPEK 123 (537)
T ss_dssp --CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGT----TTSCCS
T ss_pred --CCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEeccccc----ccchHH
Confidence 25689999999999999999999999999999999999999999999999999999999999999998 554222
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCceeecccceeecccCccceeeehhhHHHHhhhhcCCChHHHHHHhhcCcccCCC
Q 003378 166 AYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 245 (824)
Q Consensus 166 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~fa~~~~~~~~id~~~l~~~l~~~~~~~~~ 245 (824)
+...+ .+....+..|. + ..++...|+..|++
T Consensus 124 v~~~l----~~~~~~~e~~~----~-------~~~iv~vSAktG~G---------------------------------- 154 (537)
T 3izy_P 124 VKKEL----LAYDVVCEDYG----G-------DVQAVHVSALTGEN---------------------------------- 154 (537)
T ss_dssp SSSHH----HHTTSCCCCSS----S-------SEEECCCCSSSSCS----------------------------------
T ss_pred HHHHH----HhhhhhHHhcC----C-------CceEEEEECCCCCC----------------------------------
Confidence 11111 11110000000 0 00122233322211
Q ss_pred CCceeecCCCCCccchhhhHhhhchhHHHHHHHhcCChHhHHHHHHhcCCCCCHHHHHHhHHHHHHHHHhhhccchHHHH
Q 003378 246 TRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALL 325 (824)
Q Consensus 246 ~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~e~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LL 325 (824)
+ ..|+
T Consensus 155 -------------------------------------------------I--------------------------~eLl 159 (537)
T 3izy_P 155 -------------------------------------------------M--------------------------MALA 159 (537)
T ss_dssp -------------------------------------------------S--------------------------HHHH
T ss_pred -------------------------------------------------c--------------------------hhHH
Confidence 1 1222
Q ss_pred HHHHhcCCCchhhhhhhhccccCCCCcccccccccccCCCCCeEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEEcC
Q 003378 326 EMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMG 405 (824)
Q Consensus 326 d~i~~~lPsP~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~~ 405 (824)
+.+...++.+. ...+++.|+.+.|++.+.+++.|. ++.+||++|+|++||.+. .+
T Consensus 160 e~I~~l~~~~~-----------------------~~~~~~~~~~~~V~e~~~~~g~G~-V~~g~V~~G~l~~Gd~v~-~g 214 (537)
T 3izy_P 160 EATIALAEMLE-----------------------LKADPTGAVEGTVIESFTDKGRGP-VTTAIIQRGTLRKGSILV-AG 214 (537)
T ss_dssp HHHHHHHTTCC-----------------------CCCCSSSSEEEEEEEECCCTTCCC-CEEEEEEEECCSSEEEEC-CS
T ss_pred HHHHHhhhccc-----------------------ccCCCCCCcceeEEEEEEeCCCce-EEEEEEecCEEEcCCEEE-eC
Confidence 22222222110 012456899999999999988887 999999999999999885 22
Q ss_pred CCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEeccccccccce-eeecCCC
Q 003378 406 PNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKE 464 (824)
Q Consensus 406 ~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~gl~~~~~~tg-Tl~~~~~ 464 (824)
.. ..+|..|+...| .++++|.||++|+|.|+++.. ..| +|+...+
T Consensus 215 ------~~----~~kVr~i~~~~g---~~v~~A~~G~~V~i~g~~~~~-~~Gd~l~~~~~ 260 (537)
T 3izy_P 215 ------KS----WAKVRLMFDENG---RAVNEAYPSMPVGIIGWRDLP-SAGDEILEVES 260 (537)
T ss_dssp ------SC----CEEEEEEEECCC---CCSCCSCCSTTCCCCSSEEEE-EEESSCCSCCS
T ss_pred ------Cc----eEEEEEEEcCCC---CCCcEEcCCCEEEEECCCCCC-CCCCEEEecCC
Confidence 11 157777765544 679999999999999999753 457 7776543
No 33
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.56 E-value=1.3e-14 Score=155.98 Aligned_cols=116 Identities=24% Similarity=0.177 Sum_probs=90.3
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+..+|++ +|++|+|||||+++|+.....+.....+ .|.......+.+
T Consensus 5 ~~~g~V~i---vG~~nvGKSTLln~l~g~~~~ivs~~~~---------------tTr~~i~~i~~~-------------- 52 (301)
T 1wf3_A 5 TYSGFVAI---VGKPNVGKSTLLNNLLGVKVAPISPRPQ---------------TTRKRLRGILTE-------------- 52 (301)
T ss_dssp CEEEEEEE---ECSTTSSHHHHHHHHHTSCCSCCCSSSC---------------CCCSCEEEEEEE--------------
T ss_pred ccCCEEEE---ECCCCCCHHHHHHHHhCCceeeecCCCC---------------ceeEEEEEEEEe--------------
Confidence 56788999 9999999999999997654433221122 121111111223
Q ss_pred CCCceeEEEEcCCCccc--------hHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhC--CCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVD--------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~d--------f~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~--~~p~ilviNKiD~~ 155 (824)
++..++||||||+.+ |...+..+++.+|++++|+|++++....+..+++++... ++|+++|+||+|+.
T Consensus 53 --~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~ 130 (301)
T 1wf3_A 53 --GRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAA 130 (301)
T ss_dssp --TTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGC
T ss_pred --CCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccC
Confidence 278999999999987 778888999999999999999999988888888888777 89999999999997
No 34
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.53 E-value=1.8e-14 Score=163.29 Aligned_cols=116 Identities=24% Similarity=0.324 Sum_probs=87.9
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +|++|+|||||+++|+.....+.. ...|+|.+.....+.+.
T Consensus 173 ~~~~ki~l---vG~~nvGKSSLin~l~~~~~~~~~---------------~~~gtT~d~~~~~~~~~------------- 221 (436)
T 2hjg_A 173 EEVIQFCL---IGRPNVGKSSLVNAMLGEERVIVS---------------NVAGTTRDAVDTSFTYN------------- 221 (436)
T ss_dssp TTCEEEEE---ECSTTSSHHHHHHHHHTSTTEEEC------------------------CCEEEEET-------------
T ss_pred ccCcEEEE---EcCCCCCHHHHHHHHhCCCceeec---------------CCCCceeeeeEEEEEEC-------------
Confidence 45689999 999999999999999644332111 12356776666666664
Q ss_pred CCCceeEEEEcCCCcc----------chHHH-HHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCc
Q 003378 86 QGNEYLINLIDSPGHV----------DFSSE-VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDR 154 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~----------df~~e-~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~ 154 (824)
+..++||||||+. .|... ...+++.+|++|+|+|+.+|...|+..++..+...++|+|+|+||+|+
T Consensus 222 ---~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl 298 (436)
T 2hjg_A 222 ---QQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDA 298 (436)
T ss_dssp ---TEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGG
T ss_pred ---CeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccC
Confidence 6789999999993 34432 346889999999999999999999999989888899999999999999
Q ss_pred c
Q 003378 155 C 155 (824)
Q Consensus 155 ~ 155 (824)
.
T Consensus 299 ~ 299 (436)
T 2hjg_A 299 V 299 (436)
T ss_dssp S
T ss_pred C
Confidence 7
No 35
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.52 E-value=9.7e-15 Score=143.55 Aligned_cols=123 Identities=23% Similarity=0.320 Sum_probs=94.5
Q ss_pred CCCceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccc
Q 003378 3 SYCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYR 82 (824)
Q Consensus 3 ~~~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~ 82 (824)
+...+.++|++ +|+.++|||||+++|+...-.... ..++|.......+.+.
T Consensus 3 ~~~~~~~~i~v---~G~~~~GKssl~~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~---------- 53 (178)
T 2lkc_A 3 HMVERPPVVTI---MGHVDHGKTTLLDAIRHSKVTEQE----------------AGGITQHIGAYQVTVN---------- 53 (178)
T ss_dssp TTCCCCCEEEE---ESCTTTTHHHHHHHHHTTCSSCSS----------------CCSSSTTCCCCEEEET----------
T ss_pred CcCCCCCEEEE---ECCCCCCHHHHHHHHhCCccccCC----------------CCceeEeeeEEEEEeC----------
Confidence 34467789999 999999999999999532211000 1123333333344443
Q ss_pred cccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchhcccCC
Q 003378 83 GERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVD 162 (824)
Q Consensus 83 ~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~ 162 (824)
+..++||||||+.+|.......++.+|++|+|+|+.++...++...+..+...++|+++|+||+|+. ..+
T Consensus 54 ------~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~----~~~ 123 (178)
T 2lkc_A 54 ------DKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKP----EAN 123 (178)
T ss_dssp ------TEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSS----CSC
T ss_pred ------CceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCC----cCC
Confidence 6789999999999998777788889999999999999988888888888888899999999999998 655
Q ss_pred HH
Q 003378 163 GE 164 (824)
Q Consensus 163 ~~ 164 (824)
.+
T Consensus 124 ~~ 125 (178)
T 2lkc_A 124 PD 125 (178)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 36
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.51 E-value=6.7e-14 Score=151.23 Aligned_cols=117 Identities=23% Similarity=0.213 Sum_probs=88.9
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
..+-.|++ +|++|+|||||+++|+...-.+..... +.|.......+.+.
T Consensus 8 ~~~g~v~i---vG~~nvGKSTLin~l~g~~~~i~s~~~---------------~tT~~~~~~~~~~~------------- 56 (308)
T 3iev_A 8 MKVGYVAI---VGKPNVGKSTLLNNLLGTKVSIISPKA---------------GTTRMRVLGVKNIP------------- 56 (308)
T ss_dssp CEEEEEEE---ECSTTSSHHHHHHHHHTSCCSCCCSSS---------------CCCCSCEEEEEEET-------------
T ss_pred CCCCEEEE---ECCCCCcHHHHHHHHhCCCccccCCCC---------------CceeeEEEEEEecC-------------
Confidence 56678999 999999999999999754433222112 23333222222221
Q ss_pred CCCceeEEEEcCCCccch----------HHHHHHHHHhcCEEEEEEeCCCCcchhHHHH-HHHHHhCCCceEEEEeCCCc
Q 003378 86 QGNEYLINLIDSPGHVDF----------SSEVTAALRITDGALVVVDCIEGVCVQTETV-LRQALGERIRPVLTVNKMDR 154 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df----------~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~-l~~~~~~~~p~ilviNKiD~ 154 (824)
.++.++||||||+.++ ...+..+++.+|++++|+|+.++...++..+ +..+...++|+++|+||+|+
T Consensus 57 --~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl 134 (308)
T 3iev_A 57 --NEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDK 134 (308)
T ss_dssp --TTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGG
T ss_pred --CCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccC
Confidence 2689999999999654 4678889999999999999999999999988 67777789999999999998
Q ss_pred c
Q 003378 155 C 155 (824)
Q Consensus 155 ~ 155 (824)
.
T Consensus 135 ~ 135 (308)
T 3iev_A 135 I 135 (308)
T ss_dssp S
T ss_pred C
Confidence 6
No 37
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.51 E-value=9.5e-14 Score=146.15 Aligned_cols=116 Identities=15% Similarity=0.109 Sum_probs=86.4
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +|++|+|||||+++|+.....+... + .+++|.......+.|.
T Consensus 20 ~~~~~I~l---vG~~g~GKStl~n~l~~~~~~~~~~--~------------~~~~t~~~~~~~~~~~------------- 69 (260)
T 2xtp_A 20 RSELRIIL---VGKTGTGKSAAGNSILRKQAFESKL--G------------SQTLTKTCSKSQGSWG------------- 69 (260)
T ss_dssp -CCEEEEE---EECTTSCHHHHHHHHHTSCCSCCCT--T------------SCCCCCSCEEEEEEET-------------
T ss_pred CCceEEEE---ECCCCCCHHHHHHHHhCCCCcccCC--C------------CCceeeeeEEEEEEeC-------------
Confidence 35689999 9999999999999997655433221 1 1124555555555664
Q ss_pred CCCceeEEEEcCCCccchH-----------HHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhC-----CCceEEEE
Q 003378 86 QGNEYLINLIDSPGHVDFS-----------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE-----RIRPVLTV 149 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~-----------~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~-----~~p~ilvi 149 (824)
++.++||||||+.++. ..+..+++.+|++|+|+|+.. +..++..+|+.+.+. +.|+|+|+
T Consensus 70 ---~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv 145 (260)
T 2xtp_A 70 ---NREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLF 145 (260)
T ss_dssp ---TEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEE
T ss_pred ---CCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEE
Confidence 7899999999998863 233346788999999999985 777778888777665 67888888
Q ss_pred e-CCCcc
Q 003378 150 N-KMDRC 155 (824)
Q Consensus 150 N-KiD~~ 155 (824)
| |+|+.
T Consensus 146 ~nK~Dl~ 152 (260)
T 2xtp_A 146 THKEDLN 152 (260)
T ss_dssp ECGGGGT
T ss_pred EcccccC
Confidence 8 99998
No 38
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.49 E-value=3.5e-14 Score=152.87 Aligned_cols=116 Identities=20% Similarity=0.174 Sum_probs=85.4
Q ss_pred CceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccc
Q 003378 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 5 ~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (824)
..+...|++ +||+|+|||||+++|+...-.+.....+ .|.......+.+.
T Consensus 5 ~~r~~~VaI---vG~~nvGKSTLln~L~g~~~~i~s~~~~---------------tTr~~~~gi~~~~------------ 54 (301)
T 1ega_A 5 KSYCGFIAI---VGRPNVGKSTLLNKLLGQKISITSRKAQ---------------TTRHRIVGIHTEG------------ 54 (301)
T ss_dssp CCEEEEEEE---ECSSSSSHHHHHHHHHTCSEEECCCCSS---------------CCSSCEEEEEEET------------
T ss_pred cccCCEEEE---ECCCCCCHHHHHHHHHCCCccccCCCCC---------------cceeeEEEEEEEC------------
Confidence 356678999 9999999999999997543222111111 1221111122332
Q ss_pred cCCCceeEEEEcCCCcc-c--------hHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 85 RQGNEYLINLIDSPGHV-D--------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~-d--------f~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+..++|+||||+. . |...+..+++.+|++++|+|+.+ +..+++.+++.+...+.|.++|+||+|+.
T Consensus 55 ----~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~ 129 (301)
T 1ega_A 55 ----AYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNV 129 (301)
T ss_dssp ----TEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTC
T ss_pred ----CeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccC
Confidence 6799999999998 3 33334567789999999999988 99999999988888899999999999998
No 39
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.47 E-value=1.2e-13 Score=157.63 Aligned_cols=116 Identities=24% Similarity=0.330 Sum_probs=90.8
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +|++++|||||+++|+......... ..|+|.+.....+.+.
T Consensus 193 ~~~~ki~i---vG~~~vGKSslin~l~~~~~~~~~~---------------~~gtt~~~~~~~~~~~------------- 241 (456)
T 4dcu_A 193 EEVIQFCL---IGRPNVGKSSLVNAMLGEERVIVSN---------------VAGTTRDAVDTSFTYN------------- 241 (456)
T ss_dssp TTCEEEEE---ECSTTSSHHHHHHHHHTSTTEEECC---------------------CTTSEEEEET-------------
T ss_pred cccceeEE---ecCCCCCHHHHHHHHhCCCccccCC---------------CCCeEEEEEEEEEEEC-------------
Confidence 45689999 9999999999999996443322221 1245666666666664
Q ss_pred CCCceeEEEEcCCC----------ccchHHH-HHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCc
Q 003378 86 QGNEYLINLIDSPG----------HVDFSSE-VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDR 154 (824)
Q Consensus 86 ~~~~~~i~liDTPG----------h~df~~e-~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~ 154 (824)
+..++|||||| +..|... ...+++.+|++|+|+|+.+++..++..++.++...++|+|+|+||+|+
T Consensus 242 ---~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl 318 (456)
T 4dcu_A 242 ---QQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDA 318 (456)
T ss_dssp ---TEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGG
T ss_pred ---CceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhc
Confidence 67999999999 5666654 445889999999999999999999999999999999999999999998
Q ss_pred c
Q 003378 155 C 155 (824)
Q Consensus 155 ~ 155 (824)
.
T Consensus 319 ~ 319 (456)
T 4dcu_A 319 V 319 (456)
T ss_dssp S
T ss_pred C
Confidence 7
No 40
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.47 E-value=2.4e-13 Score=142.15 Aligned_cols=124 Identities=17% Similarity=0.118 Sum_probs=90.0
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +|++|+|||||+++|+.....+... ...|.|.......+.+.
T Consensus 19 ~~~l~I~l---vG~~g~GKSSlin~l~~~~~~~~~~--------------~~~~~T~~~~~~~~~~~------------- 68 (247)
T 3lxw_A 19 ESTRRLIL---VGRTGAGKSATGNSILGQRRFFSRL--------------GATSVTRACTTGSRRWD------------- 68 (247)
T ss_dssp -CEEEEEE---ESSTTSSHHHHHHHHHTSCCC-----------------------CCSCEEEEEEET-------------
T ss_pred CCceEEEE---ECCCCCcHHHHHHHHhCCCCccccC--------------CCCCccccEEEEEEEEC-------------
Confidence 56799999 9999999999999996544432221 01234555544555554
Q ss_pred CCCceeEEEEcCCCc--------cchHHHHHHHH----HhcCEEEEEEeCCCCcchhHHHHHHHHHhC------CCceEE
Q 003378 86 QGNEYLINLIDSPGH--------VDFSSEVTAAL----RITDGALVVVDCIEGVCVQTETVLRQALGE------RIRPVL 147 (824)
Q Consensus 86 ~~~~~~i~liDTPGh--------~df~~e~~~~l----~~~D~avlvvd~~~gv~~~t~~~l~~~~~~------~~p~il 147 (824)
+..++||||||. .+|..++.+++ +.+|++|+|+|+.. ....+..+++.+.+. +.|+|+
T Consensus 69 ---~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iil 144 (247)
T 3lxw_A 69 ---KCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIV 144 (247)
T ss_dssp ---TEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEE
T ss_pred ---CcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEE
Confidence 789999999998 66777787777 89999999999974 666777777766653 789999
Q ss_pred EEeCCCcchhcccCCHHHHH
Q 003378 148 TVNKMDRCFLELQVDGEEAY 167 (824)
Q Consensus 148 viNKiD~~~~~~~~~~~~~~ 167 (824)
|+||+|+. +.+.++..
T Consensus 145 v~nK~Dl~----~~~~~~~l 160 (247)
T 3lxw_A 145 FTRKEDLA----GGSLHDYV 160 (247)
T ss_dssp EECGGGGT----TCCHHHHH
T ss_pred EEchHhcC----CCCHHHHH
Confidence 99999998 76655443
No 41
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.45 E-value=1.8e-13 Score=140.10 Aligned_cols=117 Identities=18% Similarity=0.171 Sum_probs=83.4
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCC-cccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGI-IAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~-i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (824)
...++|++ +|+.|+|||||+++|+..... .... ..|.|.......+.+
T Consensus 27 ~~~~~i~v---~G~~~~GKSslin~l~~~~~~~~~~~---------------~~~~t~~~~~~~~~~------------- 75 (223)
T 4dhe_A 27 TVQPEIAF---AGRSNAGKSTAINVLCNQKRLAFASK---------------TPGRTQHINYFSVGP------------- 75 (223)
T ss_dssp CCSCEEEE---EESCHHHHHHHHHHHTTCSSSSCTTC---------------CCCSCCCEEEEEESC-------------
T ss_pred CCCCEEEE---EcCCCCCHHHHHHHHhCCCcceeecC---------------CCCcccceEEEEecC-------------
Confidence 34578999 999999999999999543311 1110 113344333222221
Q ss_pred cCCCceeEEEEcCCCcc----------chHHHHHHHHHh---cCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeC
Q 003378 85 RQGNEYLINLIDSPGHV----------DFSSEVTAALRI---TDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNK 151 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~----------df~~e~~~~l~~---~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNK 151 (824)
..+..++||||||+. .|...+...++. +|++++|+|+.++.......++..+...++|+++|+||
T Consensus 76 --~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK 153 (223)
T 4dhe_A 76 --AAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTK 153 (223)
T ss_dssp --TTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEEC
T ss_pred --CCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEec
Confidence 236789999999963 234444444444 88899999999998888888888888899999999999
Q ss_pred CCcc
Q 003378 152 MDRC 155 (824)
Q Consensus 152 iD~~ 155 (824)
+|+.
T Consensus 154 ~Dl~ 157 (223)
T 4dhe_A 154 CDKL 157 (223)
T ss_dssp GGGS
T ss_pred cccC
Confidence 9987
No 42
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.43 E-value=6.1e-13 Score=128.19 Aligned_cols=113 Identities=19% Similarity=0.147 Sum_probs=83.4
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
.+|++ +|+.|+|||||+++|+........ ...+.|.......+.+.
T Consensus 2 ~ki~v---~G~~~~GKSsli~~l~~~~~~~~~---------------~~~~~~~~~~~~~~~~~---------------- 47 (161)
T 2dyk_A 2 HKVVI---VGRPNVGKSSLFNRLLKKRSAVVA---------------DVPGVTRDLKEGVVETD---------------- 47 (161)
T ss_dssp EEEEE---ECCTTSSHHHHHHHHHHCCC--------------------------CCEEEEEEET----------------
T ss_pred CEEEE---ECCCCCCHHHHHHHHhCCCeeecc---------------CCCCceecceEEEEEeC----------------
Confidence 47888 999999999999999643321111 11233444444444443
Q ss_pred ceeEEEEcCCCccc-------hHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~d-------f~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+..+.||||||+.+ +.......++.+|++++|+|+..+.......+++.+...++|+++|+||+|+.
T Consensus 48 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 121 (161)
T 2dyk_A 48 RGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDP 121 (161)
T ss_dssp TEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSG
T ss_pred CceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccc
Confidence 56899999999987 55667778899999999999999887777777777777899999999999997
No 43
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.42 E-value=6.9e-14 Score=156.68 Aligned_cols=115 Identities=21% Similarity=0.180 Sum_probs=87.9
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +|+.|+|||||+++|+.... ...+..+|+|++.....+.+.
T Consensus 32 ~~~~kI~I---vG~~~vGKSTLin~L~~~~~---------------~~~~~~~gtT~d~~~~~~~~~------------- 80 (423)
T 3qq5_A 32 GFRRYIVV---AGRRNVGKSSFMNALVGQNV---------------SIVSDYAGTTTDPVYKSMELH------------- 80 (423)
T ss_dssp CCCEEEEE---ECSCSTTTTTTTTSSCC----------------------------CCCCEEEEEET-------------
T ss_pred CCCEEEEE---ECCCCCCHHHHHHHHHcCCC---------------CccCCCCCeeeeeEEEEEEEC-------------
Confidence 34689999 99999999999999942221 112345678888887777765
Q ss_pred CCCceeEEEEcCCCccchH-------HHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFS-------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~-------~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
....++|||||||.+|. ..+..+++.+|++|+|+|+ +...++..++..+.+.++|+|+|+||+|+.
T Consensus 81 --~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~ 153 (423)
T 3qq5_A 81 --PIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVL 153 (423)
T ss_dssp --TTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTT
T ss_pred --CCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCC
Confidence 13489999999999874 2356788889999999999 888999999999999999999999999998
No 44
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.40 E-value=1.1e-12 Score=130.98 Aligned_cols=114 Identities=16% Similarity=0.187 Sum_probs=81.0
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +|+.|+|||||+++|+...-. .. . ....|.|...... .+
T Consensus 21 ~~~~~i~v---~G~~~~GKSsli~~l~~~~~~-~~--~-----------~~~~~~t~~~~~~--~~-------------- 67 (195)
T 1svi_A 21 GGLPEIAL---AGRSNVGKSSFINSLINRKNL-AR--T-----------SSKPGKTQTLNFY--II-------------- 67 (195)
T ss_dssp SCCCEEEE---EEBTTSSHHHHHHHHHTC---------------------------CCEEEE--EE--------------
T ss_pred CCCCEEEE---ECCCCCCHHHHHHHHhCCCCc-cc--c-----------CCCCCceeeEEEE--EE--------------
Confidence 45689999 999999999999999532210 00 0 0011233332211 11
Q ss_pred CCCceeEEEEcCCC----------ccchHHHHHHHHHhc---CEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCC
Q 003378 86 QGNEYLINLIDSPG----------HVDFSSEVTAALRIT---DGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKM 152 (824)
Q Consensus 86 ~~~~~~i~liDTPG----------h~df~~e~~~~l~~~---D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKi 152 (824)
+..++|||||| +..|.......++.+ |++++|+|+..+.......+++.+...++|+++|+||+
T Consensus 68 ---~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~ 144 (195)
T 1svi_A 68 ---NDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKA 144 (195)
T ss_dssp ---TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred ---CCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECc
Confidence 23699999999 566666666666666 99999999999988888878888888899999999999
Q ss_pred Ccc
Q 003378 153 DRC 155 (824)
Q Consensus 153 D~~ 155 (824)
|+.
T Consensus 145 Dl~ 147 (195)
T 1svi_A 145 DKI 147 (195)
T ss_dssp GGS
T ss_pred ccC
Confidence 997
No 45
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.39 E-value=1.2e-12 Score=128.63 Aligned_cols=123 Identities=20% Similarity=0.132 Sum_probs=71.9
Q ss_pred CCCCCceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhc
Q 003378 1 MSSYCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS 80 (824)
Q Consensus 1 ~~~~~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~ 80 (824)
|++.....++|++ +|+.|+|||||+++|+...-.... ...++.+.....+.+.
T Consensus 1 Ms~~~~~~~~i~v---~G~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~-------- 53 (182)
T 1ky3_A 1 MSSRKKNILKVII---LGDSGVGKTSLMHRYVNDKYSQQY----------------KATIGADFLTKEVTVD-------- 53 (182)
T ss_dssp ------CEEEEEE---ECCTTSSHHHHHHHHHHSCCCTTC-------------------CCCSCEEEEECCS--------
T ss_pred CCcccCceEEEEE---ECCCCCCHHHHHHHHHhCcCCccc----------------CCccceEEEEEEEEEc--------
Confidence 5555567899999 999999999999999653211100 0111122222222221
Q ss_pred cccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHh-------CCCceEEEEeCC
Q 003378 81 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG-------ERIRPVLTVNKM 152 (824)
Q Consensus 81 ~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~~-------~~~p~ilviNKi 152 (824)
++....++||||||+.+|.......++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+
T Consensus 54 -----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 128 (182)
T 1ky3_A 54 -----GDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 128 (182)
T ss_dssp -----SSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECT
T ss_pred -----CCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECC
Confidence 13457899999999999988888888999999999999887554444333 22221 678999999999
Q ss_pred Ccc
Q 003378 153 DRC 155 (824)
Q Consensus 153 D~~ 155 (824)
|+.
T Consensus 129 Dl~ 131 (182)
T 1ky3_A 129 DAE 131 (182)
T ss_dssp TSC
T ss_pred ccc
Confidence 985
No 46
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.39 E-value=3.8e-12 Score=129.31 Aligned_cols=131 Identities=18% Similarity=0.175 Sum_probs=84.9
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|+.|+|||||+++|+...- .. . ..|+......+.+.
T Consensus 5 ~~~~ki~v---vG~~~~GKTsli~~l~~~~~--~~--~---------------~~~~~~~~~~~~~~------------- 49 (214)
T 2fh5_B 5 SSQRAVLF---VGLCDSGKTLLFVRLLTGQY--RD--T---------------QTSITDSSAIYKVN------------- 49 (214)
T ss_dssp ---CEEEE---ECSTTSSHHHHHHHHHHSCC--CC--B---------------CCCCSCEEEEEECS-------------
T ss_pred CCCCEEEE---ECCCCCCHHHHHHHHhCCCc--cc--c---------------cCCcceeeEEEEec-------------
Confidence 46789999 99999999999999965431 11 0 01111222223332
Q ss_pred CCCceeEEEEcCCCccchHH-HHHHHHHhcCEEEEEEeCCCCcchhHH---HHHHHHH------hCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSS-EVTAALRITDGALVVVDCIEGVCVQTE---TVLRQAL------GERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~-e~~~~l~~~D~avlvvd~~~gv~~~t~---~~l~~~~------~~~~p~ilviNKiD~~ 155 (824)
+..++.++|||||||.+|.. .....++.+|++|+|+|+.. ...... ..|.... ..++|+++|+||+|+.
T Consensus 50 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 128 (214)
T 2fh5_B 50 NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA 128 (214)
T ss_dssp STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTST
T ss_pred CCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCC
Confidence 11257899999999999987 56667899999999999986 222222 2233221 3468999999999997
Q ss_pred hhcccC-CHHHHHHHHHHHHHH
Q 003378 156 FLELQV-DGEEAYQTFQKVIEN 176 (824)
Q Consensus 156 ~~~~~~-~~~~~~~~~~~~~~~ 176 (824)
.. ..++..+.+++.+..
T Consensus 129 ----~~~~~~~~~~~l~~~l~~ 146 (214)
T 2fh5_B 129 ----MAKSAKLIQQQLEKELNT 146 (214)
T ss_dssp ----TCCCHHHHHHHHHHHHHH
T ss_pred ----CcccHHHHHHHHHHHHHH
Confidence 44 455555556555543
No 47
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.39 E-value=1.1e-12 Score=129.94 Aligned_cols=122 Identities=20% Similarity=0.126 Sum_probs=84.8
Q ss_pred CCCCCceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhc
Q 003378 1 MSSYCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS 80 (824)
Q Consensus 1 ~~~~~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~ 80 (824)
|+...++.++|++ +|+.++|||||+++|+........ . ..++.......+.+
T Consensus 3 m~~~~~~~~ki~v---~G~~~~GKSsli~~l~~~~~~~~~--~--------------~~~~~~~~~~~~~~--------- 54 (186)
T 2bme_A 3 MSETYDFLFKFLV---IGNAGTGKSCLLHQFIEKKFKDDS--N--------------HTIGVEFGSKIINV--------- 54 (186)
T ss_dssp -CCCCSEEEEEEE---EESTTSSHHHHHHHHHHSSCCTTC--C--------------CCSEEEEEEEEEEE---------
T ss_pred cccccccceEEEE---ECCCCCCHHHHHHHHHcCCCCCCC--C--------------CccceEEEEEEEEE---------
Confidence 3433367899999 999999999999999653321111 0 01222222222222
Q ss_pred cccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-H---HHHhCCCceEEEEeCCCcc
Q 003378 81 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-R---QALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 81 ~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~---~~~~~~~p~ilviNKiD~~ 155 (824)
+++...+.||||||+.+|.......++.+|++|+|+|+.+....+....| . .....++|+++|+||+|+.
T Consensus 55 -----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 128 (186)
T 2bme_A 55 -----GGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD 128 (186)
T ss_dssp -----TTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred -----CCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 22346899999999999999999999999999999999986554444333 2 2224678999999999986
No 48
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.38 E-value=2.4e-12 Score=128.18 Aligned_cols=113 Identities=17% Similarity=0.153 Sum_probs=81.1
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
....+|++ +|+.|+|||||+++|+...-...... .|.|.... +...
T Consensus 21 ~~~~~i~v---~G~~~~GKSsli~~l~~~~~~~~~~~---------------~~~t~~~~---~~~~------------- 66 (195)
T 3pqc_A 21 PLKGEVAF---VGRSNVGKSSLLNALFNRKIAFVSKT---------------PGKTRSIN---FYLV------------- 66 (195)
T ss_dssp CTTCEEEE---EEBTTSSHHHHHHHHHTSCCSCCCSS---------------CCCCCCEE---EEEE-------------
T ss_pred CCCeEEEE---ECCCCCCHHHHHHHHHcCccccccCC---------------CCCccCeE---EEEE-------------
Confidence 34578999 99999999999999965431111100 12232221 1111
Q ss_pred CCCceeEEEEcCCC----------ccchHHHHHHHHHhc---CEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCC
Q 003378 86 QGNEYLINLIDSPG----------HVDFSSEVTAALRIT---DGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKM 152 (824)
Q Consensus 86 ~~~~~~i~liDTPG----------h~df~~e~~~~l~~~---D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKi 152 (824)
+..+.+||||| +..|.......++.+ |++++|+|+..+.......+++.+...++|+++|+||+
T Consensus 67 ---~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~ 143 (195)
T 3pqc_A 67 ---NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKM 143 (195)
T ss_dssp ---TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred ---CCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECh
Confidence 45688999999 444555555555544 99999999999888888888888888899999999999
Q ss_pred Ccc
Q 003378 153 DRC 155 (824)
Q Consensus 153 D~~ 155 (824)
|+.
T Consensus 144 Dl~ 146 (195)
T 3pqc_A 144 DKV 146 (195)
T ss_dssp GGS
T ss_pred hcC
Confidence 997
No 49
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.38 E-value=2.8e-12 Score=127.37 Aligned_cols=124 Identities=19% Similarity=0.064 Sum_probs=82.0
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceE---EEEEeechhhhhccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGI---SLYYEMTDAALKSYR 82 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~---~~~~~~~~~~~~~~~ 82 (824)
+..++|++ +|+.|+|||||+++|+...-. .. . ..|+..... .+.+.... ..
T Consensus 9 ~~~~ki~v---~G~~~~GKSsli~~l~~~~~~--~~-~---------------~~t~~~~~~~~~~~~~~~~~-----~~ 62 (195)
T 3bc1_A 9 DYLIKFLA---LGDSGVGKTSVLYQYTDGKFN--SK-F---------------ITTVGIDFREKRVVYRANGP-----DG 62 (195)
T ss_dssp SEEEEEEE---ECSTTSSHHHHHHHHHHSCCC--CS-C---------------CCCCSEEEEEEEEEECTTSC-----CC
T ss_pred ceeEEEEE---ECCCCCCHHHHHHHHhcCCCC--cC-c---------------ccccceeeeeEEEEEecCCc-----cc
Confidence 67799999 999999999999999643211 10 0 011111111 11111000 00
Q ss_pred cccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHH-HHHHHh----CCCceEEEEeCCCcc
Q 003378 83 GERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETV-LRQALG----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 83 ~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~-l~~~~~----~~~p~ilviNKiD~~ 155 (824)
....+....++||||||+.+|.......++.+|++|+|+|+........... +..+.. .++|+++|+||+|+.
T Consensus 63 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (195)
T 3bc1_A 63 AVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE 140 (195)
T ss_dssp SSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCG
T ss_pred ccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 0001125789999999999999999999999999999999988655544333 333332 578999999999986
No 50
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.38 E-value=1.9e-12 Score=129.41 Aligned_cols=117 Identities=17% Similarity=0.181 Sum_probs=82.5
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +|+.|+|||||+++|+...-. .+....++.+.....+.+.
T Consensus 24 ~~~~ki~v---vG~~~~GKSsLi~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~------------- 71 (192)
T 2il1_A 24 DFKLQVII---IGSRGVGKTSLMERFTDDTFC----------------EACKSTVGVDFKIKTVELR------------- 71 (192)
T ss_dssp SEEEEEEE---ECSTTSSHHHHHHHHCC------------------------CCTTEEEEEEEEEET-------------
T ss_pred CCceEEEE---ECCCCCCHHHHHHHHhcCCCC----------------cCCCCccceeEEEEEEEEC-------------
Confidence 56789999 999999999999999321110 0111122333333333332
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHH---hCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL---GERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~-~~~---~~~~p~ilviNKiD~~ 155 (824)
+..+.++||||||+.+|.......++.+|++|+|+|+.++...+....|. .+. ..++|+++|+||+|+.
T Consensus 72 -~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~ 144 (192)
T 2il1_A 72 -GKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 144 (192)
T ss_dssp -TEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred -CeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 23578999999999999999999999999999999999876655543332 222 3478999999999986
No 51
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.38 E-value=1.6e-12 Score=126.51 Aligned_cols=112 Identities=19% Similarity=0.114 Sum_probs=81.0
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|+.++|||||+++|+...- .. ...|+......+.+.
T Consensus 5 ~~~~~i~v---~G~~~~GKssl~~~l~~~~~--~~-----------------~~~t~~~~~~~~~~~------------- 49 (171)
T 1upt_A 5 TREMRILI---LGLDGAGKTTILYRLQVGEV--VT-----------------TIPTIGFNVETVTYK------------- 49 (171)
T ss_dssp SSCEEEEE---ECSTTSSHHHHHHHHHHSSC--CC-----------------CCCCSSEEEEEEEET-------------
T ss_pred CCccEEEE---ECCCCCCHHHHHHHHhcCCC--CC-----------------cCCcCccceEEEEEC-------------
Confidence 35689999 99999999999999954221 11 011232233334443
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHHh----CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~~~~~----~~~p~ilviNKiD~~ 155 (824)
+..+++|||||+.+|.......++.+|++++|+|+.+.-..... ..+..... .++|+++|+||+|+.
T Consensus 50 ---~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 121 (171)
T 1upt_A 50 ---NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 121 (171)
T ss_dssp ---TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred ---CEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCc
Confidence 78999999999999988888888999999999999876433322 23333332 578999999999997
No 52
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.37 E-value=3.9e-12 Score=126.64 Aligned_cols=113 Identities=18% Similarity=0.133 Sum_probs=82.1
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|+.++|||||+++|+...-... ...|+......+.+
T Consensus 20 ~~~~ki~v---~G~~~~GKSsli~~l~~~~~~~~------------------~~~t~~~~~~~~~~-------------- 64 (188)
T 1zd9_A 20 KEEMELTL---VGLQYSGKTTFVNVIASGQFNED------------------MIPTVGFNMRKITK-------------- 64 (188)
T ss_dssp CEEEEEEE---ECSTTSSHHHHHHHHHHSCCCCS------------------CCCCCSEEEEEEEE--------------
T ss_pred CCccEEEE---ECCCCCCHHHHHHHHHcCCCCCc------------------cCCCCceeEEEEEe--------------
Confidence 56799999 99999999999999964321100 01122222223333
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHHh----CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~~~~~----~~~p~ilviNKiD~~ 155 (824)
.++.++||||||+.+|.......++.+|++|+|+|+.+.-..+.. ..+..+.. .++|+++|+||+|+.
T Consensus 65 --~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 137 (188)
T 1zd9_A 65 --GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 137 (188)
T ss_dssp --TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST
T ss_pred --CCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCc
Confidence 378999999999999998889999999999999999875433332 23333332 678999999999997
No 53
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.37 E-value=2e-12 Score=127.67 Aligned_cols=117 Identities=21% Similarity=0.248 Sum_probs=80.9
Q ss_pred CceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccc
Q 003378 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 5 ~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (824)
....++|++ +|+.|+|||||+++|+...-.... . .|+....... +.
T Consensus 15 ~~~~~ki~v---~G~~~~GKSsl~~~l~~~~~~~~~--~----------------~t~~~~~~~~-~~------------ 60 (183)
T 3kkq_A 15 NLPTYKLVV---VGDGGVGKSALTIQFFQKIFVDDY--D----------------PTIEDSYLKH-TE------------ 60 (183)
T ss_dssp CCCEEEEEE---ECSTTSSHHHHHHHHHHSCCCSCC--C----------------TTCCEEEEEE-EE------------
T ss_pred CCCceEEEE---ECCCCCCHHHHHHHHHhCCCCCCC--C----------------CCccceeEEE-EE------------
Confidence 356799999 999999999999999743211100 0 1111111111 11
Q ss_pred cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-----HHHHHHHhCCCceEEEEeCCCcc
Q 003378 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-----TVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-----~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
.++..+.+++|||||+.+|.......++.+|++++|+|+.+....... .+.+.....++|+++|+||+|+.
T Consensus 61 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 136 (183)
T 3kkq_A 61 IDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM 136 (183)
T ss_dssp ETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCS
T ss_pred eCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCch
Confidence 123456788899999999998889999999999999999986433322 22233345788999999999986
No 54
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.37 E-value=5e-13 Score=131.32 Aligned_cols=122 Identities=16% Similarity=0.135 Sum_probs=83.5
Q ss_pred CCCCCceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhc
Q 003378 1 MSSYCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS 80 (824)
Q Consensus 1 ~~~~~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~ 80 (824)
|+......++|++ +|+.|+|||||+++|+...-. .+....++.......+.+.
T Consensus 2 m~~~~~~~~~i~v---~G~~~~GKssl~~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~-------- 54 (181)
T 3tw8_B 2 MARDYDHLFKLLI---IGDSGVGKSSLLLRFADNTFS----------------GSYITTIGVDFKIRTVEIN-------- 54 (181)
T ss_dssp ----CCEEEEEEE---ECCTTSCHHHHHHHHCSCC-------------------CCTTTBSEEEEEEEEEET--------
T ss_pred CccccCcceEEEE---ECCCCCCHHHHHHHHhcCCCC----------------CccCCCceeEEEEEEEEEC--------
Confidence 4444567899999 999999999999999321110 0111233444443444443
Q ss_pred cccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHh--CCCceEEEEeCCCcc
Q 003378 81 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG--ERIRPVLTVNKMDRC 155 (824)
Q Consensus 81 ~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~~--~~~p~ilviNKiD~~ 155 (824)
+..+.++||||||+.+|.......++.+|++|+|+|+.++........| ..+.. .++|+++|+||+|+.
T Consensus 55 ------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 126 (181)
T 3tw8_B 55 ------GEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDP 126 (181)
T ss_dssp ------TEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCG
T ss_pred ------CEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCc
Confidence 2347899999999999988888889999999999999986555443333 22322 358899999999986
No 55
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.37 E-value=3.8e-12 Score=123.05 Aligned_cols=109 Identities=20% Similarity=0.154 Sum_probs=78.8
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
++|++ +|+.|+|||||+++|+...-. . . .-|+......+.+ +
T Consensus 1 ~ki~~---~G~~~~GKssl~~~l~~~~~~--~----------~-------~~t~~~~~~~~~~----------------~ 42 (164)
T 1r8s_A 1 MRILM---VGLDAAGKTTILYKLKLGEIV--T----------T-------IPTIGFNVETVEY----------------K 42 (164)
T ss_dssp CEEEE---ECSTTSSHHHHHHHHHHHCSS--C----------C-------CCCSSCCEEEEEC----------------S
T ss_pred CEEEE---ECCCCCCHHHHHHHHHcCCcC--c----------c-------cCcCceeEEEEEE----------------C
Confidence 47889 999999999999999654311 1 0 0122222223333 3
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHHh----CCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~~~~~----~~~p~ilviNKiD~~ 155 (824)
++.+++|||||+.+|.......++.+|++++|+|+.+.-..... ..+..+.. .++|+++|+||+|+.
T Consensus 43 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 114 (164)
T 1r8s_A 43 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 114 (164)
T ss_dssp SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCc
Confidence 68999999999999998888899999999999999876433322 23333333 378999999999997
No 56
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.37 E-value=2.5e-12 Score=126.00 Aligned_cols=117 Identities=17% Similarity=0.149 Sum_probs=82.5
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +|+.++|||||+++|+........ .. ..|.+.... .+.+
T Consensus 13 ~~~~~i~v---~G~~~~GKSsli~~l~~~~~~~~~--~~------------t~~~~~~~~--~~~~-------------- 59 (179)
T 1z0f_A 13 SYIFKYII---IGDMGVGKSCLLHQFTEKKFMADC--PH------------TIGVEFGTR--IIEV-------------- 59 (179)
T ss_dssp SEEEEEEE---ECSTTSSHHHHHHHHHHSCCCSSC--TT------------SCCCCEEEE--EEEE--------------
T ss_pred ccceEEEE---ECCCCCCHHHHHHHHHcCCCCCCC--CC------------ccceEEEEE--EEEE--------------
Confidence 56799999 999999999999999654321111 00 011222211 2222
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHH---hCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~---~~~~p~ilviNKiD~~ 155 (824)
++....+.||||||+.+|.......++.+|++|+|+|+.+.........| ..+. ..++|+++|+||+|+.
T Consensus 60 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 133 (179)
T 1z0f_A 60 SGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133 (179)
T ss_dssp TTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 22367899999999999999999999999999999999987554444333 2222 3578999999999986
No 57
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.37 E-value=2e-12 Score=127.06 Aligned_cols=119 Identities=18% Similarity=0.171 Sum_probs=75.8
Q ss_pred CceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccc
Q 003378 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 5 ~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (824)
....++|++ +|+.++|||||+++|+...-.... . ...+++......+.+
T Consensus 7 ~~~~~~i~v---~G~~~~GKssli~~l~~~~~~~~~--~-------------~~t~~~~~~~~~~~~------------- 55 (180)
T 2g6b_A 7 YDVAFKVML---VGDSGVGKTCLLVRFKDGAFLAGT--F-------------ISTVGIDFRNKVLDV------------- 55 (180)
T ss_dssp CSEEEEEEE---ECSTTSSHHHHHHHHHHSCCCCCC--C-------------CCCCSCEEEEEEEEE-------------
T ss_pred CCcceEEEE---ECcCCCCHHHHHHHHHhCCCCCCC--c-------------CCceeeEEEEEEEEE-------------
Confidence 367899999 999999999999999654321111 0 011222222222222
Q ss_pred cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHH-HHHHHh---CCCceEEEEeCCCcc
Q 003378 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETV-LRQALG---ERIRPVLTVNKMDRC 155 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~-l~~~~~---~~~p~ilviNKiD~~ 155 (824)
++..+.+++|||||+.+|.......++.+|++|+|+|+.+......... +..+.. .++|+++|+||+|+.
T Consensus 56 -~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 129 (180)
T 2g6b_A 56 -DGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA 129 (180)
T ss_dssp -TTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTT
T ss_pred -CCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccC
Confidence 2235689999999999999888889999999999999988654443322 233332 678999999999987
No 58
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.36 E-value=2.5e-12 Score=128.70 Aligned_cols=114 Identities=18% Similarity=0.194 Sum_probs=82.0
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
....+|++ +|+.++|||||+++|+...-.. .++ ..|+......+.+
T Consensus 15 ~~~~ki~v---~G~~~~GKSsl~~~l~~~~~~~----------~~~-------~~t~~~~~~~~~~-------------- 60 (199)
T 4bas_A 15 KTKLQVVM---CGLDNSGKTTIINQVKPAQSSS----------KHI-------TATVGYNVETFEK-------------- 60 (199)
T ss_dssp -CEEEEEE---ECCTTSCHHHHHHHHSCCC--------------CC-------CCCSSEEEEEEEE--------------
T ss_pred CCCcEEEE---ECCCCCCHHHHHHHHhcCCCcc----------ccc-------ccccceeEEEEEe--------------
Confidence 56789999 9999999999999993211110 011 1133332333333
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHHhC-----------CCceEEEEeCCC
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALGE-----------RIRPVLTVNKMD 153 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~~~~~~-----------~~p~ilviNKiD 153 (824)
.++.++||||||+.+|.......++.+|++|+|+|+.++...... ..+..+... ++|+|+|+||+|
T Consensus 61 --~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~D 138 (199)
T 4bas_A 61 --GRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMD 138 (199)
T ss_dssp --TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTT
T ss_pred --CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcC
Confidence 378999999999999988888889999999999999987654333 344444443 889999999999
Q ss_pred cc
Q 003378 154 RC 155 (824)
Q Consensus 154 ~~ 155 (824)
+.
T Consensus 139 l~ 140 (199)
T 4bas_A 139 AA 140 (199)
T ss_dssp ST
T ss_pred CC
Confidence 97
No 59
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.36 E-value=2e-12 Score=129.12 Aligned_cols=117 Identities=17% Similarity=0.160 Sum_probs=83.7
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +|+.++|||||+++|+...-.... ...++.......+.+.
T Consensus 14 ~~~~ki~v---~G~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~------------- 61 (196)
T 3tkl_A 14 DYLFKLLL---IGDSGVGKSCLLLRFADDTYTESY----------------ISTIGVDFKIRTIELD------------- 61 (196)
T ss_dssp SEEEEEEE---ECSTTSSHHHHHHHHHHSCCCSCC----------------CCCSSEEEEEEEEEET-------------
T ss_pred ccceEEEE---ECcCCCCHHHHHHHHHcCCCCCCC----------------CCcccceEEEEEEEEC-------------
Confidence 56789999 999999999999999643221111 1123333333334332
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHH---hCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~---~~~~p~ilviNKiD~~ 155 (824)
+..+.++||||||+.+|.......++.+|++|+|+|+.+....+....| ..+. ..++|+++|+||+|+.
T Consensus 62 -~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 134 (196)
T 3tkl_A 62 -GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 134 (196)
T ss_dssp -TEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred -CEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 2357899999999999999899999999999999999986544333333 3332 3378999999999986
No 60
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.36 E-value=2e-12 Score=146.73 Aligned_cols=112 Identities=25% Similarity=0.320 Sum_probs=84.9
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
+|++ +|++|+|||||+++|+.....+.. | ..|+|.+.....+.|. +
T Consensus 3 ~v~i---vG~pnvGKStL~nrl~~~~~~~v~---------~------~~g~T~d~~~~~~~~~----------------~ 48 (439)
T 1mky_A 3 TVLI---VGRPNVGKSTLFNKLVKKKKAIVE---------D------EEGVTRDPVQDTVEWY----------------G 48 (439)
T ss_dssp EEEE---ECCTTSSHHHHHHHHHC-----------------------------CCSEEEEEET----------------T
T ss_pred EEEE---ECCCCCCHHHHHHHHhCCCCceec---------C------CCCCccceeeEEEEEC----------------C
Confidence 5888 999999999999999543322211 1 2356777766777775 7
Q ss_pred eeEEEEcCCCccc---------hHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 90 YLINLIDSPGHVD---------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 90 ~~i~liDTPGh~d---------f~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
..+.+|||||... +...+..+++.+|++|+|+|+..|.......+...+.+.++|+++|+||+|+.
T Consensus 49 ~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 49 KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 123 (439)
T ss_dssp EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSH
T ss_pred eEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc
Confidence 7899999999764 34567788999999999999999998888888777777899999999999986
No 61
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.36 E-value=9.1e-13 Score=132.92 Aligned_cols=122 Identities=20% Similarity=0.125 Sum_probs=81.4
Q ss_pred CCCCCceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhc
Q 003378 1 MSSYCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS 80 (824)
Q Consensus 1 ~~~~~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~ 80 (824)
|++-....++|++ +|+.|+|||||+++|+........ . ..++.+.....+.+
T Consensus 1 M~~~~~~~~ki~v---~G~~~~GKSsli~~l~~~~~~~~~--~--------------~t~~~~~~~~~~~~--------- 52 (207)
T 1vg8_A 1 MTSRKKVLLKVII---LGDSGVGKTSLMNQYVNKKFSNQY--K--------------ATIGADFLTKEVMV--------- 52 (207)
T ss_dssp ------CEEEEEE---ECCTTSSHHHHHHHHHHSCCCSSC--C--------------CCCSEEEEEEEEES---------
T ss_pred CCcccCcceEEEE---ECcCCCCHHHHHHHHHcCCCCCCC--C--------------CcccceEEEEEEEE---------
Confidence 5555567899999 999999999999999654321110 0 01222222222222
Q ss_pred cccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HHh-------CCCceEEEEeCC
Q 003378 81 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG-------ERIRPVLTVNKM 152 (824)
Q Consensus 81 ~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~-~~~-------~~~p~ilviNKi 152 (824)
++..+.+.||||||+.+|.......++.+|++|+|+|+.++........|.. +.. .++|+++|+||+
T Consensus 53 -----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 127 (207)
T 1vg8_A 53 -----DDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127 (207)
T ss_dssp -----SSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECT
T ss_pred -----CCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECC
Confidence 2345789999999999988777788899999999999988755444433322 211 478999999999
Q ss_pred Ccc
Q 003378 153 DRC 155 (824)
Q Consensus 153 D~~ 155 (824)
|+.
T Consensus 128 Dl~ 130 (207)
T 1vg8_A 128 DLE 130 (207)
T ss_dssp TSS
T ss_pred CCc
Confidence 986
No 62
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.36 E-value=6.5e-12 Score=123.05 Aligned_cols=117 Identities=21% Similarity=0.170 Sum_probs=81.8
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|+.|+|||||+++|+...-... ....++.......+.+.
T Consensus 5 ~~~~~i~v---~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~------------- 52 (177)
T 1wms_A 5 SSLFKVIL---LGDGGVGKSSLMNRYVTNKFDTQ----------------LFHTIGVEFLNKDLEVD------------- 52 (177)
T ss_dssp EEEEEEEE---ECCTTSSHHHHHHHHHHSCCCC--------------------CCSEEEEEEEEEET-------------
T ss_pred cceeEEEE---ECCCCCCHHHHHHHHHcCCCCCC----------------CCCceeeeEEEEEEEEC-------------
Confidence 56799999 99999999999999964321100 01112222222233332
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHH---h----CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---G----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~---~----~~~p~ilviNKiD~~ 155 (824)
+....+.||||||+.+|.......++.+|++++|+|+.+....+....| ..+. . .++|+++|+||+|+.
T Consensus 53 -~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 53 -GHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp -TEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred -CEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 2356899999999999998888899999999999999987554443333 2222 1 678999999999986
No 63
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.36 E-value=2.2e-12 Score=125.09 Aligned_cols=116 Identities=20% Similarity=0.174 Sum_probs=80.7
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
++++|++ +|+.|+|||||+++|+...-.... . ..++.......+.+ +
T Consensus 2 ~~~~i~v---~G~~~~GKssli~~l~~~~~~~~~--~--------------~~~~~~~~~~~~~~--------------~ 48 (170)
T 1ek0_A 2 TSIKLVL---LGEAAVGKSSIVLRFVSNDFAENK--E--------------PTIGAAFLTQRVTI--------------N 48 (170)
T ss_dssp EEEEEEE---ECSTTSSHHHHHHHHHHSCCCTTC--C--------------CCSSEEEEEEEEEE--------------T
T ss_pred ceEEEEE---ECCCCCCHHHHHHHHhcCCCCCCC--C--------------CccceeEEEEEEEE--------------C
Confidence 4689999 999999999999999654321100 0 01111111222222 2
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHH---hCCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~---~~~~p~ilviNKiD~~ 155 (824)
+....+.+|||||+.+|.......++.+|++++|+|+.+.........| ..+. ..++|+++|+||+|+.
T Consensus 49 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1ek0_A 49 EHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXL 121 (170)
T ss_dssp TEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 2367899999999999998899999999999999999986544443333 2332 2478899999999986
No 64
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.35 E-value=2.6e-12 Score=126.09 Aligned_cols=120 Identities=20% Similarity=0.172 Sum_probs=81.3
Q ss_pred CCCCCceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeece-EEEEEeechhhhh
Q 003378 1 MSSYCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALK 79 (824)
Q Consensus 1 ~~~~~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~ 79 (824)
|+.-..+.++|++ +|+.|+|||||+++|+...-.-.. .+ |+.... ..+.+
T Consensus 2 m~~~~~~~~~i~v---~G~~~~GKssli~~l~~~~~~~~~--~~----------------t~~~~~~~~~~~-------- 52 (181)
T 2fn4_A 2 MDPPPSETHKLVV---VGGGGVGKSALTIQFIQSYFVSDY--DP----------------TIEDSYTKICSV-------- 52 (181)
T ss_dssp --CCSSCEEEEEE---EECTTSSHHHHHHHHHHSSCCSSC--CT----------------TCCEEEEEEEEE--------
T ss_pred CCCCCCCceEEEE---ECCCCCCHHHHHHHHHhCcCcccc--CC----------------CcCceEEEEEEE--------
Confidence 4444567899999 999999999999999654211100 11 111111 11222
Q ss_pred ccccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-----HHHHHHHhCCCceEEEEeCCCc
Q 003378 80 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-----TVLRQALGERIRPVLTVNKMDR 154 (824)
Q Consensus 80 ~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-----~~l~~~~~~~~p~ilviNKiD~ 154 (824)
++....++||||||+.+|.......++.+|++++|+|+.+.-..... .+++.....++|+++|+||+|+
T Consensus 53 ------~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 126 (181)
T 2fn4_A 53 ------DGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL 126 (181)
T ss_dssp ------TTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGG
T ss_pred ------CCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 22357899999999999988888899999999999999875332222 2223333468899999999998
Q ss_pred c
Q 003378 155 C 155 (824)
Q Consensus 155 ~ 155 (824)
.
T Consensus 127 ~ 127 (181)
T 2fn4_A 127 E 127 (181)
T ss_dssp G
T ss_pred c
Confidence 6
No 65
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.35 E-value=3.1e-12 Score=123.54 Aligned_cols=114 Identities=21% Similarity=0.232 Sum_probs=78.4
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceee-ceEEEEEeechhhhhcccccc
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKS-TGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~-~~~~~~~~~~~~~~~~~~~~~ 85 (824)
+.++|++ +|+.|+|||||+++|+...-.... .. |+.. ....+.+
T Consensus 2 ~~~~i~v---~G~~~~GKSsli~~l~~~~~~~~~--~~----------------~~~~~~~~~~~~-------------- 46 (167)
T 1kao_A 2 REYKVVV---LGSGGVGKSALTVQFVTGTFIEKY--DP----------------TIEDFYRKEIEV-------------- 46 (167)
T ss_dssp CEEEEEE---ECCTTSSHHHHHHHHHHSCCCSCC--CT----------------TCCEEEEEEEEE--------------
T ss_pred cEEEEEE---ECCCCCCHHHHHHHHHcCCCcccC--CC----------------CcceeEEEEEEE--------------
Confidence 3589999 999999999999999653321100 00 1110 0111222
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-H----HHHHHHhCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-T----VLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~----~l~~~~~~~~p~ilviNKiD~~ 155 (824)
++....++||||||+.+|.......++.+|++++|+|+.+....... . +++.+...++|+++|+||+|+.
T Consensus 47 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1kao_A 47 DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121 (167)
T ss_dssp TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred CCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccc
Confidence 22356799999999999999999999999999999999875433222 2 2222233578999999999986
No 66
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.35 E-value=2e-12 Score=130.01 Aligned_cols=117 Identities=21% Similarity=0.217 Sum_probs=78.6
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|+.++|||||+++|+...-.... ....|.+.... .+.+
T Consensus 26 ~~~~ki~v---~G~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~~~~--~~~~-------------- 72 (199)
T 2p5s_A 26 QKAYKIVL---AGDAAVGKSSFLMRLCKNEFRENI--------------SATLGVDFQMK--TLIV-------------- 72 (199)
T ss_dssp --CEEEEE---ESSTTSSHHHHHHHHHHCCCC------------------------CEEE--EEEE--------------
T ss_pred CCCeEEEE---ECcCCCCHHHHHHHHHhCCCCccC--------------CCCccceeEEE--EEEE--------------
Confidence 56799999 999999999999999643211000 00112222221 2222
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHH---hCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~---~~~~p~ilviNKiD~~ 155 (824)
++....++||||||+.+|.......++.+|++|+|+|+.++...+....| ..+. ..++|+++|+||+|+.
T Consensus 73 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 73 DGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp TTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred CCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 22357899999999999999999999999999999999887655544333 2232 2478999999999986
No 67
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.35 E-value=2.3e-12 Score=126.81 Aligned_cols=117 Identities=19% Similarity=0.147 Sum_probs=82.3
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|+.++|||||+++|+...-.... ...++.......+.+.
T Consensus 10 ~~~~ki~v---~G~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~------------- 57 (181)
T 2efe_B 10 SINAKLVL---LGDVGAGKSSLVLRFVKDQFVEFQ----------------ESTIGAAFFSQTLAVN------------- 57 (181)
T ss_dssp CEEEEEEE---ECCTTSCHHHHHHHHHHCCCTTTS----------------CCCSCCSEEEEEEEET-------------
T ss_pred ccceEEEE---ECcCCCCHHHHHHHHHcCCCCCcC----------------CCCceeEEEEEEEEEC-------------
Confidence 56789999 999999999999999643221100 0112222222222222
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHHh---CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG---ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~~~~~---~~~p~ilviNKiD~~ 155 (824)
+..+.+.||||||+.+|.......++.+|++|+|+|+.+....... ..+..+.. .++|+++|+||+|+.
T Consensus 58 -~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 130 (181)
T 2efe_B 58 -DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL 130 (181)
T ss_dssp -TEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred -CEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 2367899999999999998889999999999999999876554333 33344433 377899999999986
No 68
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.35 E-value=1.4e-12 Score=130.13 Aligned_cols=128 Identities=20% Similarity=0.209 Sum_probs=83.8
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +|+.|+|||||++.|...... .. .+...... .+...|+. +.+... .....
T Consensus 12 ~~~~ki~v---vG~~~~GKssL~~~l~~~~~~-~~--~~~~~~~~-----~~~~~t~~-----~~~~~~------~~~~~ 69 (198)
T 3t1o_A 12 EINFKIVY---YGPGLSGKTTNLKWIYSKVPE-GR--KGEMVSLA-----TEDERTLF-----FDFLPL------DIGEV 69 (198)
T ss_dssp EEEEEEEE---ECSTTSSHHHHHHHHHHTSCG-GG--BCCCEEEE-----CSSCEEEE-----EEECCS------SCCCS
T ss_pred ccccEEEE---ECCCCCCHHHHHHHHHhhccc-cc--cccccccc-----ccccccee-----eeeccc------ccccc
Confidence 57799999 999999999999655321111 00 11000000 00001111 111100 00023
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHh---------CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG---------ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~---------~~~p~ilviNKiD~~ 155 (824)
++..+.++||||||+.+|.......++.+|++|+|+|+.++...+....+..+.. .++|+++|+||+|+.
T Consensus 70 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~ 148 (198)
T 3t1o_A 70 KGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLP 148 (198)
T ss_dssp SSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTST
T ss_pred cCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcc
Confidence 4457889999999999999999999999999999999998776666655554433 588999999999997
No 69
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.35 E-value=4.5e-12 Score=124.32 Aligned_cols=118 Identities=14% Similarity=0.068 Sum_probs=81.7
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|+.++|||||+++|+...-. .+....++++.....+.+.
T Consensus 4 ~~~~ki~v---~G~~~~GKssl~~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~------------- 51 (178)
T 2hxs_A 4 MRQLKIVV---LGDGASGKTSLTTCFAQETFG----------------KQYKQTIGLDFFLRRITLP------------- 51 (178)
T ss_dssp CCEEEEEE---ECCTTSSHHHHHHHHHGGGTT----------------HHHHHTTTSSEEEEEEEET-------------
T ss_pred CceEEEEE---ECcCCCCHHHHHHHHHhCcCC----------------CCCCCceeEEEEEEEEEeC-------------
Confidence 46799999 999999999999999532210 1111222223333333332
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHh-----CCCc-eEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG-----ERIR-PVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~~-----~~~p-~ilviNKiD~~ 155 (824)
++....++||||||+.+|.......++.+|++|+|+|+.+....+....| ..+.. .+.| +++|+||+|+.
T Consensus 52 ~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~ 128 (178)
T 2hxs_A 52 GNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE 128 (178)
T ss_dssp TTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG
T ss_pred CCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc
Confidence 11247899999999999988888999999999999999886554433333 33332 2667 67999999996
No 70
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.34 E-value=1.2e-11 Score=119.50 Aligned_cols=114 Identities=22% Similarity=0.221 Sum_probs=76.0
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeec-eEEEEEeechhhhhcccccc
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~ 85 (824)
+.++|++ +|+.|+|||||+++|+...- .....+ |+... ...+.+
T Consensus 3 ~~~~i~v---~G~~~~GKssl~~~l~~~~~--~~~~~~----------------t~~~~~~~~~~~-------------- 47 (168)
T 1u8z_A 3 ALHKVIM---VGSGGVGKSALTLQFMYDEF--VEDYEP----------------TKADSYRKKVVL-------------- 47 (168)
T ss_dssp CEEEEEE---ECSTTSSHHHHHHHHHHSCC--CSCCCT----------------TCCEEEEEEEEE--------------
T ss_pred ceEEEEE---ECCCCCCHHHHHHHHHhCcc--CCCCCC----------------CcceEEEEEEEE--------------
Confidence 4689999 99999999999999975331 110011 11111 111222
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHH----HhCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQA----LGERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~----~~~~~p~ilviNKiD~~ 155 (824)
++..+.+.||||||+.+|.......++.+|++++|+|+.+.........| ..+ ...++|+++|+||+|+.
T Consensus 48 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 122 (168)
T 1u8z_A 48 DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122 (168)
T ss_dssp TTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG
T ss_pred CCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc
Confidence 22357899999999999999999999999999999999875433332222 222 23478999999999986
No 71
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.34 E-value=5.4e-12 Score=122.15 Aligned_cols=115 Identities=18% Similarity=0.174 Sum_probs=78.7
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
++++|++ +|+.|+|||||+++|+... ...... .|+..... ..+. .+
T Consensus 2 ~~~ki~v---~G~~~~GKssli~~l~~~~--~~~~~~----------------~t~~~~~~-~~~~------------~~ 47 (167)
T 1c1y_A 2 REYKLVV---LGSGGVGKSALTVQFVQGI--FVEKYD----------------PTIEDSYR-KQVE------------VD 47 (167)
T ss_dssp CEEEEEE---ECSTTSSHHHHHHHHHHCC--CCCSCC----------------CCSEEEEE-EEEE------------SS
T ss_pred ceeEEEE---ECCCCCCHHHHHHHHHcCC--CCCCCC----------------CCccceEE-EEEE------------EC
Confidence 3589999 9999999999999996522 111000 11111111 1111 23
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHH----HhCCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQA----LGERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~~~----~~~~~p~ilviNKiD~~ 155 (824)
+..+.++||||||+.+|.......++.+|++++|+|+.+....... ..+..+ ...++|+++|+||+|+.
T Consensus 48 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1c1y_A 48 CQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121 (167)
T ss_dssp SCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG
T ss_pred CEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccc
Confidence 3467899999999999998888999999999999999875332222 222222 23588999999999996
No 72
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.34 E-value=2.3e-12 Score=128.47 Aligned_cols=117 Identities=19% Similarity=0.182 Sum_probs=82.0
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|+.++|||||+++|+...-.... . ..++.......+.+
T Consensus 13 ~~~~~i~v---~G~~~~GKssli~~l~~~~~~~~~--~--------------~t~~~~~~~~~~~~-------------- 59 (195)
T 1x3s_A 13 LTTLKILI---IGESGVGKSSLLLRFTDDTFDPEL--A--------------ATIGVDFKVKTISV-------------- 59 (195)
T ss_dssp EEEEEEEE---ECSTTSSHHHHHHHHHHSCCCTTC--C--------------CCCSEEEEEEEEEE--------------
T ss_pred CCceEEEE---ECCCCCCHHHHHHHHHcCCCCccC--C--------------CccceEEEEEEEEE--------------
Confidence 56799999 999999999999999653321100 0 01111111222222
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHh----CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~~----~~~p~ilviNKiD~~ 155 (824)
++..+.+.||||||+.+|.......++.+|++|+|+|+...........| ..+.. .++|+++|+||+|+.
T Consensus 60 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 60 DGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 134 (195)
T ss_dssp TTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred CCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc
Confidence 22367899999999999988888999999999999999886554443333 34433 467899999999985
No 73
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.34 E-value=3.6e-12 Score=125.26 Aligned_cols=115 Identities=20% Similarity=0.272 Sum_probs=78.3
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
...+|++ +|+.|+|||||+++|........... .+.|.+.....+.+.
T Consensus 3 ~~~ki~i---vG~~g~GKStLl~~l~~~~~~~~~~~---------------~~~t~~~~~~~~~~~-------------- 50 (172)
T 2gj8_A 3 HGMKVVI---AGRPNAGKSSLLNALAGREAAIVTDI---------------AGTTRDVLREHIHID-------------- 50 (172)
T ss_dssp -CEEEEE---EESTTSSHHHHHHHHHTSCCSCCCSS---------------TTCCCSCEEEEEEET--------------
T ss_pred CCCEEEE---ECCCCCCHHHHHHHHhCCCcceeeCC---------------CCceeceeeEEEEEC--------------
Confidence 4578999 99999999999999954322111111 123333333334443
Q ss_pred CCceeEEEEcCCCccchHH--------HHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHh---CCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSS--------EVTAALRITDGALVVVDCIEGVCVQTETVLRQALG---ERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~--------e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~---~~~p~ilviNKiD~~ 155 (824)
+..+.+|||||+.++.. .+...++.+|++++|+|+..........+|..+.. .++|+++|+||+|+.
T Consensus 51 --~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 51 --GMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT 128 (172)
T ss_dssp --TEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred --CeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCC
Confidence 56799999999875321 13346789999999999998776665555555443 368999999999986
No 74
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.34 E-value=9e-13 Score=130.20 Aligned_cols=122 Identities=17% Similarity=0.129 Sum_probs=62.5
Q ss_pred CCCCCceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhc
Q 003378 1 MSSYCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS 80 (824)
Q Consensus 1 ~~~~~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~ 80 (824)
|+...+..++|++ +|+.|+|||||+++|+...-. .+....++.+.....+.+.
T Consensus 1 M~~~~~~~~ki~v---~G~~~~GKssl~~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~-------- 53 (183)
T 2fu5_C 1 MAKTYDYLFKLLL---IGDSGVGKTCVLFRFSEDAFN----------------STFISTIGIDFKIRTIELD-------- 53 (183)
T ss_dssp --CCCSEEEEEEE---ECCCCC--------------------------------CHHHHHCEEEEEEEEEET--------
T ss_pred CCcccCCceEEEE---ECCCCCCHHHHHHHHHhCCCC----------------CCCCCcccceeEEEEEEEC--------
Confidence 4443467899999 999999999999999532110 0111223333333333332
Q ss_pred cccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHHHHh---CCCceEEEEeCCCcc
Q 003378 81 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG---ERIRPVLTVNKMDRC 155 (824)
Q Consensus 81 ~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~-~l~~~~~---~~~p~ilviNKiD~~ 155 (824)
+..+.++||||||+.+|.......++.+|++|+|+|+.+........ .+..+.. .++|+++|+||+|+.
T Consensus 54 ------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (183)
T 2fu5_C 54 ------GKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN 126 (183)
T ss_dssp ------TEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CC
T ss_pred ------CEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCC
Confidence 23578999999999999888888889999999999998864433332 2333333 478999999999986
No 75
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.34 E-value=2.7e-12 Score=129.20 Aligned_cols=117 Identities=16% Similarity=0.142 Sum_probs=81.4
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
+..++|++ +|+.++|||||+++|+...-.... .. ..|++.. ...+.+
T Consensus 6 ~~~~ki~v---~G~~~~GKSsli~~l~~~~~~~~~--~~------------t~~~~~~--~~~~~~-------------- 52 (203)
T 1zbd_A 6 DYMFKILI---IGNSSVGKTSFLFRYADDSFTPAF--VS------------TVGIDFK--VKTIYR-------------- 52 (203)
T ss_dssp SEEEEEEE---ECSTTSSHHHHHHHHHTCCCCSCC--CC------------CCSEEEE--EEEEEE--------------
T ss_pred ceeeEEEE---ECCCCCCHHHHHHHHhcCCCCCCc--CC------------ccceeEE--EEEEEE--------------
Confidence 46799999 999999999999999532211000 00 0112221 112222
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHh---CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~~---~~~p~ilviNKiD~~ 155 (824)
++....++||||||+.+|.......++.+|++|+|+|+.++........| ..+.. .++|+++|+||+|+.
T Consensus 53 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (203)
T 1zbd_A 53 NDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME 126 (203)
T ss_dssp TTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCT
T ss_pred CCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 22367899999999999999999999999999999999886544433333 33333 478999999999986
No 76
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.34 E-value=2.9e-12 Score=124.33 Aligned_cols=117 Identities=18% Similarity=0.175 Sum_probs=80.8
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.++++|++ +|+.++|||||+++|+...-.... . ...|.+... ..+.+
T Consensus 4 ~~~~~i~v---~G~~~~GKssli~~l~~~~~~~~~--~------------~~~~~~~~~--~~~~~-------------- 50 (170)
T 1r2q_A 4 ICQFKLVL---LGESAVGKSSLVLRFVKGQFHEFQ--E------------STIGAAFLT--QTVCL-------------- 50 (170)
T ss_dssp EEEEEEEE---ECSTTSSHHHHHHHHHHSCCCTTC--C------------CCSSEEEEE--EEEEE--------------
T ss_pred CceEEEEE---ECCCCCCHHHHHHHHHcCCCCCCC--C------------CccceEEEE--EEEEE--------------
Confidence 46789999 999999999999999643211000 0 001122211 12222
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHHHHh---CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG---ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~-~l~~~~~---~~~p~ilviNKiD~~ 155 (824)
++.++.+++|||||+.+|.......++.+|++|+|+|+.+........ .+..+.. .++|+++|+||+|+.
T Consensus 51 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1r2q_A 51 DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124 (170)
T ss_dssp TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 223678999999999999988899999999999999998765444333 2333332 367888999999986
No 77
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.34 E-value=1.1e-12 Score=138.96 Aligned_cols=111 Identities=19% Similarity=0.229 Sum_probs=83.7
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
.++|++ +|+.|+|||||+++|..... . .| ...|+|+......+.|.
T Consensus 3 ~~~i~l---vG~~g~GKTTL~n~l~g~~~---~--~~-----------~~~~~t~~~~~~~~~~~--------------- 48 (271)
T 3k53_A 3 LKTVAL---VGNPNVGKTTIFNALTGLRQ---H--VG-----------NWPGVTVEKKEGIMEYR--------------- 48 (271)
T ss_dssp CEEEEE---EECSSSSHHHHHHHHHTTCE---E--EE-----------ECTTSSCEEEEEEEEET---------------
T ss_pred eeEEEE---ECCCCCCHHHHHHHHhCCCc---c--cC-----------CCCCeEEEeeEEEEEEC---------------
Confidence 478999 99999999999999943211 1 11 12457777777777775
Q ss_pred CceeEEEEcCCCccchHHH------HHHHH--HhcCEEEEEEeCCCCcchhHHHHHHHHHhCC-CceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSE------VTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGER-IRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e------~~~~l--~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~-~p~ilviNKiD~~ 155 (824)
++.++||||||+.+|... ....+ ..+|++++|+|+..+ .+....+.++...+ +|+++|+||+|+.
T Consensus 49 -~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 122 (271)
T 3k53_A 49 -EKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLL 122 (271)
T ss_dssp -TEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHH
T ss_pred -CceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcC
Confidence 678999999999887652 22233 469999999999885 35556677777888 9999999999975
No 78
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.34 E-value=9.3e-13 Score=149.27 Aligned_cols=113 Identities=27% Similarity=0.301 Sum_probs=80.1
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
.+|++ +|++|+|||||+++|+...-.+ + +...|.|.+.....+.|.
T Consensus 4 ~~V~i---vG~~nvGKStL~n~l~~~~~~~---------v------~~~~g~T~d~~~~~~~~~---------------- 49 (436)
T 2hjg_A 4 PVVAI---VGRPNVGKSTIFNRIAGERISI---------V------EDTPGVTRDRIYSSAEWL---------------- 49 (436)
T ss_dssp CEEEE---ECSTTSSHHHHHHHHEEEECC--------------------------CEEEECTTC----------------
T ss_pred CEEEE---ECCCCCCHHHHHHHHhCCCcee---------e------cCCCCCccceEEEEEEEC----------------
Confidence 57899 9999999999999994221111 1 112356665554444443
Q ss_pred ceeEEEEcCCCcc--------chHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHV--------DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~--------df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+..++||||||+. .|...+..+++.+|++|+|+|+.+|.......+++.+.+.++|+++|+||+|+.
T Consensus 50 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~ 124 (436)
T 2hjg_A 50 NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 124 (436)
T ss_dssp SSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-
T ss_pred CceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCc
Confidence 6789999999986 567778889999999999999999999998888888888899999999999987
No 79
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.34 E-value=3.8e-12 Score=144.35 Aligned_cols=116 Identities=19% Similarity=0.264 Sum_probs=84.0
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +|++|+|||||+++|+.....+..... |.|.+.....+.+.
T Consensus 178 ~~~~kvai---vG~~gvGKSTLln~l~g~~~~~v~~~~---------------gtT~d~~~~~i~~~------------- 226 (439)
T 1mky_A 178 TDAIKVAI---VGRPNVGKSTLFNAILNKERALVSPIP---------------GTTRDPVDDEVFID------------- 226 (439)
T ss_dssp CSCEEEEE---ECSTTSSHHHHHHHHHTSTTEEECCCC---------------------CCEEEEET-------------
T ss_pred ccCceEEE---ECCCCCCHHHHHHHHhCCcccccCCCC---------------CCcCCceEEEEEEC-------------
Confidence 35689999 999999999999999644322221112 34555444555564
Q ss_pred CCCceeEEEEcCCCccchHH------------HHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCC
Q 003378 86 QGNEYLINLIDSPGHVDFSS------------EVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 153 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~------------e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD 153 (824)
+..+.+|||||+..+.. .+..+++.+|++++|+|+..+...+...++..+...++|+++|+||+|
T Consensus 227 ---g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~D 303 (439)
T 1mky_A 227 ---GRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWD 303 (439)
T ss_dssp ---TEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGG
T ss_pred ---CEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcc
Confidence 67899999999854432 235678899999999999999988888888888889999999999999
Q ss_pred cc
Q 003378 154 RC 155 (824)
Q Consensus 154 ~~ 155 (824)
+.
T Consensus 304 l~ 305 (439)
T 1mky_A 304 LV 305 (439)
T ss_dssp GS
T ss_pred CC
Confidence 87
No 80
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.34 E-value=1.7e-12 Score=129.62 Aligned_cols=113 Identities=19% Similarity=0.099 Sum_probs=79.7
Q ss_pred CceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccc
Q 003378 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 5 ~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (824)
..+.++|++ +|+.|+|||||+++|....- .. ...|+......+.+.
T Consensus 20 ~~~~~ki~~---vG~~~vGKSsli~~l~~~~~--~~-----------------~~~t~~~~~~~~~~~------------ 65 (190)
T 1m2o_B 20 WNKHGKLLF---LGLDNAGKTTLLHMLKNDRL--AT-----------------LQPTWHPTSEELAIG------------ 65 (190)
T ss_dssp ----CEEEE---EESTTSSHHHHHHHHHHSCC--CC-----------------CCCCCSCEEEEEEET------------
T ss_pred cCCccEEEE---ECCCCCCHHHHHHHHhcCCC--Cc-----------------cccCCCCCeEEEEEC------------
Confidence 356789999 99999999999999964321 11 012333333344443
Q ss_pred cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHH----hCCCceEEEEeCCCcc
Q 003378 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL----GERIRPVLTVNKMDRC 155 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~~~~----~~~~p~ilviNKiD~~ 155 (824)
+..++++||||+.+|.......++.+|++++|+|+.++-..... ..+..+. ..++|+++|+||+|+.
T Consensus 66 ----~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 137 (190)
T 1m2o_B 66 ----NIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAP 137 (190)
T ss_dssp ----TEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST
T ss_pred ----CEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCc
Confidence 68999999999999887777788999999999999987544333 2333333 2578999999999997
No 81
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.33 E-value=1e-11 Score=124.29 Aligned_cols=65 Identities=22% Similarity=0.266 Sum_probs=53.1
Q ss_pred eeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHH-hCCCceEEEEeCCCc
Q 003378 90 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL-GERIRPVLTVNKMDR 154 (824)
Q Consensus 90 ~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~-~~~~p~ilviNKiD~ 154 (824)
..++||||||+.+|.......++.+|++|+|+|+.++...+....| ..+. ..+.|+++|+||+|.
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~ 159 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDK 159 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTC
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCc
Confidence 7899999999999998899999999999999999987655544333 3333 356899999999993
No 82
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.33 E-value=2.9e-12 Score=135.11 Aligned_cols=115 Identities=19% Similarity=0.183 Sum_probs=77.4
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
+.++|++ +|++|+|||||+++|+......... ..+.|.......+.+.
T Consensus 35 ~~~~I~l---vG~~g~GKSSLin~l~~~~~~~~~~---------------~~~~t~~~~~~~~~~~-------------- 82 (262)
T 3def_A 35 NSMTVLV---LGKGGVGKSSTVNSLIGEQVVRVSP---------------FQAEGLRPVMVSRTMG-------------- 82 (262)
T ss_dssp CEEEEEE---EECTTSSHHHHHHHHHTSCCSCCCS---------------SCC-CCCCEEEEEEET--------------
T ss_pred CCcEEEE---ECCCCCCHHHHHHHHhCCCCcccCC---------------CCCcceeeEEEEEEEC--------------
Confidence 5789999 9999999999999997544321111 1234555555555554
Q ss_pred CCceeEEEEcCCCccchHHHHHHHH---H------hcCEEEEEEeCCC-CcchhHHHHHHHHHhC-----CCceEEEEeC
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAAL---R------ITDGALVVVDCIE-GVCVQTETVLRQALGE-----RIRPVLTVNK 151 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l---~------~~D~avlvvd~~~-gv~~~t~~~l~~~~~~-----~~p~ilviNK 151 (824)
+..++|||||||.+|.......+ . .+|++++|+|... ........+++.+... ..|+++|+||
T Consensus 83 --~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK 160 (262)
T 3def_A 83 --GFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTH 160 (262)
T ss_dssp --TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred --CeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeC
Confidence 77999999999998753322222 2 7899999987754 3333444555555432 2388999999
Q ss_pred CCcc
Q 003378 152 MDRC 155 (824)
Q Consensus 152 iD~~ 155 (824)
+|+.
T Consensus 161 ~Dl~ 164 (262)
T 3def_A 161 AQFS 164 (262)
T ss_dssp TTCC
T ss_pred cccC
Confidence 9984
No 83
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.33 E-value=2.5e-12 Score=124.61 Aligned_cols=117 Identities=15% Similarity=0.197 Sum_probs=80.0
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|+.|+|||||+++|+...- ... .. ..++.+.....+.+
T Consensus 3 ~~~~~i~v---~G~~~~GKssl~~~l~~~~~--~~~-~~-------------~t~~~~~~~~~~~~-------------- 49 (168)
T 1z2a_A 3 EVAIKMVV---VGNGAVGKSSMIQRYCKGIF--TKD-YK-------------KTIGVDFLERQIQV-------------- 49 (168)
T ss_dssp -CEEEEEE---ECSTTSSHHHHHHHHHHCCC--CCC-SS-------------CCCSSSEEEEEEEE--------------
T ss_pred ceeEEEEE---ECcCCCCHHHHHHHHHcCCC--CCC-CC-------------CceEEEEEEEEEEE--------------
Confidence 46789999 99999999999999964321 110 00 00111121222222
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHh--CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG--ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~~--~~~p~ilviNKiD~~ 155 (824)
++....+.||||||+.+|.......++.+|++++|+|+.+.........| ..+.. .++|+++|+||+|+.
T Consensus 50 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 122 (168)
T 1z2a_A 50 NDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLL 122 (168)
T ss_dssp TTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGG
T ss_pred CCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccC
Confidence 22357899999999999988888899999999999999876543333223 33322 488999999999986
No 84
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.33 E-value=7e-12 Score=125.73 Aligned_cols=117 Identities=13% Similarity=0.098 Sum_probs=79.2
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|..++|||||++++... .... ...+.+.........+.
T Consensus 18 ~~~~ki~~---vG~~~vGKTsLi~~l~~~--~~~~---------------~~~~~~~~~~~~~~~~~------------- 64 (196)
T 3llu_A 18 GSKPRILL---MGLRRSGKSSIQKVVFHK--MSPN---------------ETLFLESTNKIYKDDIS------------- 64 (196)
T ss_dssp --CCEEEE---EESTTSSHHHHHHHHHSC--CCGG---------------GGGGCCCCCSCEEEEEC-------------
T ss_pred CcceEEEE---ECCCCCCHHHHHHHHHhc--CCCc---------------ceeeeccccceeeeecc-------------
Confidence 56789999 999999999999977321 1100 01122222223333222
Q ss_pred CCCceeEEEEcCCCccchHHHH---HHHHHhcCEEEEEEeCCCCcchhHHHHHHHHH-----hCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEV---TAALRITDGALVVVDCIEGVCVQTETVLRQAL-----GERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~---~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~-----~~~~p~ilviNKiD~~ 155 (824)
++..+.++||||||+.+|.... ...++.+|++|+|+|+.+........+...+. ..++|+++|+||+|+.
T Consensus 65 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~ 142 (196)
T 3llu_A 65 NSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGL 142 (196)
T ss_dssp CTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred CCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccC
Confidence 2346899999999999998777 78999999999999999873233333323222 3478999999999987
No 85
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.33 E-value=2.3e-12 Score=128.72 Aligned_cols=117 Identities=20% Similarity=0.163 Sum_probs=82.0
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|+.++|||||+++|+...-.... .. ..|.+.... .+.+
T Consensus 21 ~~~~ki~v---vG~~~~GKSsli~~l~~~~~~~~~--~~------------~~~~~~~~~--~~~~-------------- 67 (192)
T 2fg5_A 21 IRELKVCL---LGDTGVGKSSIVCRFVQDHFDHNI--SP------------TIGASFMTK--TVPC-------------- 67 (192)
T ss_dssp CEEEEEEE---EECTTSSHHHHHHHHHHCCCCTTC--CC------------CSSEEEEEE--EEEC--------------
T ss_pred CCceEEEE---ECcCCCCHHHHHHHHhcCCCCCCc--CC------------CcceeEEEE--EEEe--------------
Confidence 56799999 999999999999999653311000 00 011222111 1111
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHh---CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~~---~~~p~ilviNKiD~~ 155 (824)
++....++||||||+.+|.......++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+.
T Consensus 68 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 141 (192)
T 2fg5_A 68 GNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS 141 (192)
T ss_dssp SSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 23467899999999999998889999999999999999886554443333 33333 378999999999986
No 86
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.33 E-value=1e-11 Score=125.21 Aligned_cols=117 Identities=17% Similarity=0.219 Sum_probs=80.3
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +|+.++|||||+++|+... ... +....++.+.....+.+.
T Consensus 27 ~~~~ki~v---vG~~~vGKSsli~~l~~~~--~~~--------------~~~~t~~~~~~~~~~~~~------------- 74 (201)
T 2hup_A 27 DFLFKLVL---VGDASVGKTCVVQRFKTGA--FSE--------------RQGSTIGVDFTMKTLEIQ------------- 74 (201)
T ss_dssp CEEEEEEE---EECTTSSHHHHHHHHHHSC--C------------------------CEEEEEEEET-------------
T ss_pred ccceEEEE---ECcCCCCHHHHHHHHhhCC--CCC--------------CCCCCcceEEEEEEEEEC-------------
Confidence 56789999 9999999999999995422 110 000011122222233332
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHHHHh---CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG---ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~-~l~~~~~---~~~p~ilviNKiD~~ 155 (824)
+....++||||||+.+|.......++.+|++|+|+|+.+........ .+..+.. .++|+++|+||+|+.
T Consensus 75 -~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 147 (201)
T 2hup_A 75 -GKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS 147 (201)
T ss_dssp -TEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred -CEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccc
Confidence 23578999999999999999999999999999999998764433332 2333332 568999999999997
No 87
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.33 E-value=1.6e-12 Score=137.93 Aligned_cols=111 Identities=20% Similarity=0.272 Sum_probs=81.5
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
.++|++ +|++|+|||||+++|..... .+.+ ..|+|+......+.+.
T Consensus 3 ~~~I~l---vG~~n~GKSTLin~l~g~~~----------~v~~------~~g~t~~~~~~~~~~~--------------- 48 (274)
T 3i8s_A 3 KLTIGL---IGNPNSGKTTLFNQLTGSRQ----------RVGN------WAGVTVERKEGQFSTT--------------- 48 (274)
T ss_dssp CEEEEE---EECTTSSHHHHHHHHHTTCE----------EEEE------CTTSSSEEEEEEEECS---------------
T ss_pred ccEEEE---ECCCCCCHHHHHHHHhCCCc----------ccCC------CCCeeEEEEEEEEEeC---------------
Confidence 479999 99999999999999943321 1111 1356777666666554
Q ss_pred CceeEEEEcCCCccchHH---------HHHH---HHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSS---------EVTA---ALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~---------e~~~---~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+..++||||||+.+|.. .+.+ ..+.+|++|+|+|+.. ......++.++.+.++|+++|+||+|+.
T Consensus 49 -~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~ 125 (274)
T 3i8s_A 49 -DHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIA 125 (274)
T ss_dssp -SCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHH
T ss_pred -CCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccch
Confidence 67899999999988761 1111 2368999999999987 2344456677778899999999999986
No 88
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.33 E-value=4.1e-12 Score=126.22 Aligned_cols=112 Identities=19% Similarity=0.144 Sum_probs=78.1
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|+.++|||||+++|+...-. . + .-|+......+.+.
T Consensus 14 ~~~~~i~v---~G~~~~GKssl~~~l~~~~~~--~-------~----------~~t~~~~~~~~~~~------------- 58 (187)
T 1zj6_A 14 HQEHKVII---VGLDNAGKTTILYQFSMNEVV--H-------T----------SPTIGSNVEEIVIN------------- 58 (187)
T ss_dssp TSCEEEEE---EESTTSSHHHHHHHHHTTSCE--E-------E----------ECCSCSSCEEEEET-------------
T ss_pred CCccEEEE---ECCCCCCHHHHHHHHhcCCCC--c-------C----------cCCCccceEEEEEC-------------
Confidence 46799999 999999999999999532211 1 0 01222223334443
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHHh----CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~~~~~----~~~p~ilviNKiD~~ 155 (824)
+..+.||||||+.+|.......++.+|++|+|+|+.+.-..... ..+..+.. .++|+++|+||+|+.
T Consensus 59 ---~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 130 (187)
T 1zj6_A 59 ---NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 130 (187)
T ss_dssp ---TEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTST
T ss_pred ---CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCc
Confidence 68999999999999888888899999999999999987443332 33344433 578999999999997
No 89
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.33 E-value=2.6e-12 Score=127.99 Aligned_cols=114 Identities=17% Similarity=0.134 Sum_probs=80.1
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|+.|+|||||+++|+........ ...|+......+.+.
T Consensus 19 ~~~~ki~v---~G~~~~GKSsli~~l~~~~~~~~~-----------------~~~t~~~~~~~~~~~------------- 65 (190)
T 2h57_A 19 SKEVHVLC---LGLDNSGKTTIINKLKPSNAQSQN-----------------ILPTIGFSIEKFKSS------------- 65 (190)
T ss_dssp --CEEEEE---EECTTSSHHHHHHHTSCGGGCCSS-----------------CCCCSSEEEEEEECS-------------
T ss_pred CCccEEEE---ECCCCCCHHHHHHHHhcCCCCCCC-----------------cCCccceeEEEEEEC-------------
Confidence 56789999 999999999999999432210100 112333333333332
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHHh------CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG------ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~~~~~------~~~p~ilviNKiD~~ 155 (824)
+..+.||||||+.+|.......++.+|++|+|+|+.+.-..... ..+..+.. .++|+++|+||+|+.
T Consensus 66 ---~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 139 (190)
T 2h57_A 66 ---SLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR 139 (190)
T ss_dssp ---SCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTST
T ss_pred ---CEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcc
Confidence 67999999999999988888889999999999999876433322 23333332 478999999999997
No 90
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.33 E-value=2e-12 Score=130.58 Aligned_cols=122 Identities=16% Similarity=0.134 Sum_probs=83.9
Q ss_pred CCCCCceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhc
Q 003378 1 MSSYCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS 80 (824)
Q Consensus 1 ~~~~~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~ 80 (824)
|+...+..++|++ +|+.++|||||+++|+...-.... ...++.......+.+.
T Consensus 1 M~~~~~~~~ki~v---~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~-------- 53 (206)
T 2bcg_Y 1 MNSEYDYLFKLLL---IGNSGVGKSCLLLRFSDDTYTNDY----------------ISTIGVDFKIKTVELD-------- 53 (206)
T ss_dssp --CCCSEEEEEEE---EESTTSSHHHHHHHHHHCCCCTTC----------------CCSSCCCEEEEEEEET--------
T ss_pred CCcccCcceEEEE---ECCCCCCHHHHHHHHhcCCCCCCC----------------CCcccceeEEEEEEEC--------
Confidence 5533467899999 999999999999999653221100 0112222222233332
Q ss_pred cccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHH---hCCCceEEEEeCCCcc
Q 003378 81 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 155 (824)
Q Consensus 81 ~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~---~~~~p~ilviNKiD~~ 155 (824)
+..+.+.||||||+.+|.......++.+|++|+|+|+...........| ..+. ..++|+++|+||+|+.
T Consensus 54 ------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (206)
T 2bcg_Y 54 ------GKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK 126 (206)
T ss_dssp ------TEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred ------CEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 2356899999999999988888889999999999999987655444333 3332 2468899999999997
No 91
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.32 E-value=4e-12 Score=123.46 Aligned_cols=117 Identities=21% Similarity=0.178 Sum_probs=81.4
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|+.++|||||+++|+...-.... .. ..|.+... ..+.+
T Consensus 4 ~~~~~i~v---~G~~~~GKSsli~~l~~~~~~~~~--~~------------~~~~~~~~--~~~~~-------------- 50 (170)
T 1z0j_A 4 LRELKVCL---LGDTGVGKSSIMWRFVEDSFDPNI--NP------------TIGASFMT--KTVQY-------------- 50 (170)
T ss_dssp EEEEEEEE---ECCTTSSHHHHHHHHHHSCCCTTC--CC------------CCSEEEEE--EEEEE--------------
T ss_pred CcceEEEE---ECcCCCCHHHHHHHHHcCCCCCCC--CC------------ceeEEEEE--EEEEE--------------
Confidence 46799999 999999999999999654311100 00 01122211 12222
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHH---hCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~---~~~~p~ilviNKiD~~ 155 (824)
++....+.+|||||+.+|.......++.+|++++|+|+.+.........| ..+. ..++|+++|+||+|+.
T Consensus 51 ~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1z0j_A 51 QNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT 124 (170)
T ss_dssp TTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG
T ss_pred CCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc
Confidence 22357899999999999988888999999999999999887654443333 3333 3466788999999997
No 92
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.32 E-value=1.6e-11 Score=121.06 Aligned_cols=115 Identities=23% Similarity=0.249 Sum_probs=79.2
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeec-eEEEEEeechhhhhccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~ 84 (824)
.+.++|++ +|+.++|||||+++|+...- .....+ |+... ...+.+
T Consensus 16 ~~~~ki~v---~G~~~~GKSsli~~l~~~~~--~~~~~~----------------t~~~~~~~~~~~------------- 61 (187)
T 2a9k_A 16 LALHKVIM---VGSGGVGKSALTLQFMYDEF--VEDYEP----------------TKADSYRKKVVL------------- 61 (187)
T ss_dssp -CEEEEEE---ECSTTSSHHHHHHHHHHSCC--CCSCCT----------------TCCEEEEEEEEE-------------
T ss_pred CCceEEEE---ECCCCCCHHHHHHHHhhCCC--CCcCCC----------------ccceEEEEEEEE-------------
Confidence 46789999 99999999999999975331 110011 11111 111222
Q ss_pred cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-----HHHHHHhCCCceEEEEeCCCcc
Q 003378 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-----VLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~-----~l~~~~~~~~p~ilviNKiD~~ 155 (824)
++..+.+.||||||+.+|.......++.+|++++|+|+.+........ +...+...++|+++|+||+|+.
T Consensus 62 -~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 136 (187)
T 2a9k_A 62 -DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136 (187)
T ss_dssp -TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGG
T ss_pred -CCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 223568999999999999999999999999999999998754333222 2222223488999999999986
No 93
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.32 E-value=4e-12 Score=124.55 Aligned_cols=117 Identities=19% Similarity=0.219 Sum_probs=81.4
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|+.++|||||+++|+...-.... ...++++.....+.+.
T Consensus 12 ~~~~~i~v---~G~~~~GKssli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~------------- 59 (179)
T 2y8e_A 12 LRKFKLVF---LGEQSVGKTSLITRFMYDSFDNTY----------------QATIGIDFLSKTMYLE------------- 59 (179)
T ss_dssp CEEEEEEE---EESTTSSHHHHHHHHHHSCCCSSC----------------CCCCSEEEEEEEEEET-------------
T ss_pred CcceEEEE---ECCCCCCHHHHHHHHHcCCCCCCC----------------CCceeeEEEEEEEEEC-------------
Confidence 35689999 999999999999999743221110 0112222222233332
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHH---hCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~---~~~~p~ilviNKiD~~ 155 (824)
+....+.||||||+.+|.......++.+|++++|+|+.+.........| ..+. ..++|+++|+||+|+.
T Consensus 60 -~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 132 (179)
T 2y8e_A 60 -DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS 132 (179)
T ss_dssp -TEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGG
T ss_pred -CeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 2357899999999999998888999999999999999875443333222 2222 3578999999999986
No 94
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.32 E-value=2.1e-12 Score=125.44 Aligned_cols=116 Identities=19% Similarity=0.158 Sum_probs=79.6
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
..++|++ +|+.++|||||+++|+...-.... ...++.+.....+.+ +
T Consensus 2 ~~~~i~v---~G~~~~GKssli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~--------------~ 48 (170)
T 1g16_A 2 SIMKILL---IGDSGVGKSCLLVRFVEDKFNPSF----------------ITTIGIDFKIKTVDI--------------N 48 (170)
T ss_dssp CEEEEEE---EESTTSSHHHHHHHHHHCCCCC-----------------------CCEEEEEEES--------------S
T ss_pred CceEEEE---ECcCCCCHHHHHHHHHhCCCCCCC----------------CCccceeEEEEEEEE--------------C
Confidence 4689999 999999999999999643211000 111222222222322 2
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHH-HHHHHh---CCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETV-LRQALG---ERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~-l~~~~~---~~~p~ilviNKiD~~ 155 (824)
+..+.+.||||||+.+|.......++.+|++++|+|+.+......... +..+.. .++|+++|+||+|+.
T Consensus 49 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 49 GKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 121 (170)
T ss_dssp SCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred CEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC
Confidence 345789999999999998888889999999999999987654433332 333332 478999999999984
No 95
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.32 E-value=2.2e-12 Score=135.50 Aligned_cols=109 Identities=22% Similarity=0.256 Sum_probs=81.2
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
+|++ +|++|+|||||+++|....- .+.+ ..|+|++.....+.+. +
T Consensus 3 kI~l---vG~~n~GKSTL~n~L~g~~~----------~v~~------~pg~Tv~~~~~~~~~~----------------~ 47 (256)
T 3iby_A 3 HALL---IGNPNCGKTTLFNALTNANQ----------RVGN------WPGVTVEKKTGEFLLG----------------E 47 (256)
T ss_dssp EEEE---EESTTSSHHHHHHHHHTTSE----------EEEE------CTTSSSEEEEEEEEET----------------T
T ss_pred EEEE---ECCCCCCHHHHHHHHHCCCC----------CccC------CCCceEEEEEEEEEEC----------------C
Confidence 6888 99999999999999943211 1111 1367777776666664 6
Q ss_pred eeEEEEcCCCccchHHH----------HHHHH--HhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 90 YLINLIDSPGHVDFSSE----------VTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 90 ~~i~liDTPGh~df~~e----------~~~~l--~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
..++||||||+.+|... ....+ +.+|++|+|+|+.. ......++.++...++|+++|+||+|+.
T Consensus 48 ~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~ 123 (256)
T 3iby_A 48 HLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIA 123 (256)
T ss_dssp EEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHH
T ss_pred eEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 79999999999887541 22334 67999999999987 3344556677888899999999999986
No 96
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.32 E-value=5.6e-12 Score=125.40 Aligned_cols=117 Identities=21% Similarity=0.200 Sum_probs=79.5
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|+.++|||||+++|+...-.... ...++.+.....+.+.
T Consensus 18 ~~~~ki~v---~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~------------- 65 (189)
T 1z06_A 18 SRIFKIIV---IGDSNVGKTCLTYRFCAGRFPDRT----------------EATIGVDFRERAVDID------------- 65 (189)
T ss_dssp -CEEEEEE---ECCTTSSHHHHHHHHHHSSCCSSC----------------CCCCSCCEEEEEEEET-------------
T ss_pred CceEEEEE---ECCCCCCHHHHHHHHHcCCCCCCC----------------CCCcceEEEEEEEEEC-------------
Confidence 46789999 999999999999999653221100 0011222222223222
Q ss_pred CCCceeEEEEcCCCccchH-HHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHH----HhCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFS-SEVTAALRITDGALVVVDCIEGVCVQTETVL-RQA----LGERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~-~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~----~~~~~p~ilviNKiD~~ 155 (824)
+....++||||||+.+|. ......++.+|++|+|+|+.+........-| ..+ ...++|+++|+||+|+.
T Consensus 66 -~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (189)
T 1z06_A 66 -GERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140 (189)
T ss_dssp -TEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG
T ss_pred -CEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 235789999999999998 6677888999999999999875443332222 222 24578999999999986
No 97
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.32 E-value=6.9e-12 Score=121.88 Aligned_cols=115 Identities=17% Similarity=0.182 Sum_probs=78.0
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
+.++|++ +|+.|+|||||+++|+... ...... .|+....... +. .+
T Consensus 2 ~~~~i~v---~G~~~~GKssli~~l~~~~--~~~~~~----------------~t~~~~~~~~-~~------------~~ 47 (172)
T 2erx_A 2 NDYRVAV---FGAGGVGKSSLVLRFVKGT--FRESYI----------------PTVEDTYRQV-IS------------CD 47 (172)
T ss_dssp CEEEEEE---ECCTTSSHHHHHHHHHTCC--CCSSCC----------------CCSCEEEEEE-EE------------ET
T ss_pred CceEEEE---ECCCCCCHHHHHHHHHcCC--CCCCCC----------------CCccccEEEE-EE------------EC
Confidence 3589999 9999999999999996321 111000 0111111111 11 12
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchh-HHHHHHHHHh-----CCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQALG-----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~-t~~~l~~~~~-----~~~p~ilviNKiD~~ 155 (824)
+..+.+.+|||||+.+|.......++.+|++++|+|+.+..... ....+..+.+ .++|+++|+||+|+.
T Consensus 48 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~ 122 (172)
T 2erx_A 48 KSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122 (172)
T ss_dssp TEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG
T ss_pred CEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccc
Confidence 23578999999999999999999999999999999998754332 2334444433 378999999999986
No 98
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.32 E-value=3.6e-12 Score=127.15 Aligned_cols=117 Identities=18% Similarity=0.144 Sum_probs=81.7
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|+.|+|||||+++|+........ .. ..|.+.. ...+.+
T Consensus 23 ~~~~ki~v---~G~~~~GKSsLi~~l~~~~~~~~~--~~------------t~~~~~~--~~~~~~-------------- 69 (193)
T 2oil_A 23 NFVFKVVL---IGESGVGKTNLLSRFTRNEFSHDS--RT------------TIGVEFS--TRTVML-------------- 69 (193)
T ss_dssp SEEEEEEE---ESSTTSSHHHHHHHHHHSCCCSSC--CC------------CSSEEEE--EEEEEE--------------
T ss_pred CcceEEEE---ECcCCCCHHHHHHHHhcCCCCCCC--CC------------ccceeEE--EEEEEE--------------
Confidence 56799999 999999999999999654322111 00 0011111 111222
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHHHHh---CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG---ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~-~l~~~~~---~~~p~ilviNKiD~~ 155 (824)
++....++||||||+.+|.......++.+|++|+|+|+.......... .+..+.. .++|+++|+||+|+.
T Consensus 70 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 143 (193)
T 2oil_A 70 GTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS 143 (193)
T ss_dssp TTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG
T ss_pred CCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc
Confidence 224678999999999999888889999999999999998765543333 3334433 378899999999996
No 99
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.31 E-value=5.1e-12 Score=127.13 Aligned_cols=113 Identities=20% Similarity=0.203 Sum_probs=76.4
Q ss_pred CceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccc
Q 003378 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 5 ~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (824)
..+.++|++ +|+.|+|||||+++|.. +... . ...|+......+.+.
T Consensus 22 ~~~~~ki~l---vG~~~vGKSsLi~~l~~--~~~~----------~-------~~~t~~~~~~~~~~~------------ 67 (198)
T 1f6b_A 22 YKKTGKLVF---LGLDNAGKTTLLHMLKD--DRLG----------Q-------HVPTLHPTSEELTIA------------ 67 (198)
T ss_dssp TTCCEEEEE---EEETTSSHHHHHHHHSC--C-----------------------CCCCCSCEEEEET------------
T ss_pred cCCCcEEEE---ECCCCCCHHHHHHHHhc--CCCC----------c-------cCCCCCceeEEEEEC------------
Confidence 356789999 99999999999999931 1110 0 112333333344443
Q ss_pred cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHH----hCCCceEEEEeCCCcc
Q 003378 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL----GERIRPVLTVNKMDRC 155 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~~~~----~~~~p~ilviNKiD~~ 155 (824)
+..+++|||||+.+|.......++.+|++++|+|+.+.-..... ..+..+. ..++|+++|+||+|+.
T Consensus 68 ----~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 139 (198)
T 1f6b_A 68 ----GMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 139 (198)
T ss_dssp ----TEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTST
T ss_pred ----CEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcc
Confidence 58999999999999887777788999999999999876443322 2233333 2578999999999997
No 100
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.31 E-value=7.4e-12 Score=123.93 Aligned_cols=116 Identities=21% Similarity=0.194 Sum_probs=76.9
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|+.|+|||||+++|+...-.... .+ .+.......+.+
T Consensus 2 ~~~~ki~v---~G~~~~GKSsli~~l~~~~~~~~~--~~---------------t~~~~~~~~~~~-------------- 47 (189)
T 4dsu_A 2 STEYKLVV---VGADGVGKSALTIQLIQNHFVDEY--DP---------------TIEDSYRKQVVI-------------- 47 (189)
T ss_dssp CEEEEEEE---ECCTTSSHHHHHHHHHHSSCCCCC--CT---------------TCCEEEEEEEEE--------------
T ss_pred CcEEEEEE---ECCCCCCHHHHHHHHHhCCCCCCC--CC---------------CchheEEEEEEE--------------
Confidence 36789999 999999999999999743321111 11 011111111122
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHH----HhCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQA----LGERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~----~~~~~p~ilviNKiD~~ 155 (824)
++..+.++||||||+.+|.......++.+|++++|+|+.+.........| ..+ ...++|+++|+||+|+.
T Consensus 48 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 122 (189)
T 4dsu_A 48 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP 122 (189)
T ss_dssp TTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS
T ss_pred CCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc
Confidence 23356788999999999998899999999999999999875443333222 222 23578999999999987
No 101
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.31 E-value=2.3e-12 Score=128.32 Aligned_cols=117 Identities=18% Similarity=0.157 Sum_probs=81.5
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
+..++|++ +|+.++|||||+++|+...-.... .. ..|.+... ..+.+
T Consensus 20 ~~~~ki~v---vG~~~~GKSsli~~l~~~~~~~~~--~~------------t~~~~~~~--~~~~~-------------- 66 (189)
T 2gf9_A 20 DYMFKLLL---IGNSSVGKTSFLFRYADDSFTPAF--VS------------TVGIDFKV--KTVYR-------------- 66 (189)
T ss_dssp SEEEEEEE---ECSTTSSHHHHHHHHHHSCCCCSC--CC------------CCCCEEEE--EEEEE--------------
T ss_pred CceeEEEE---ECCCCCCHHHHHHHHHcCCCCCCc--CC------------ceeEEEEE--EEEEE--------------
Confidence 56799999 999999999999999653321110 00 01222221 12222
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHHHHh---CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG---ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~-~l~~~~~---~~~p~ilviNKiD~~ 155 (824)
++....++||||||+.+|.......++.+|++|+|+|+.+........ .+..+.. .++|+++|+||+|+.
T Consensus 67 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 140 (189)
T 2gf9_A 67 HDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE 140 (189)
T ss_dssp TTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 223678999999999999888888899999999999998765443333 3344443 378999999999986
No 102
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.31 E-value=4.3e-12 Score=133.39 Aligned_cols=113 Identities=24% Similarity=0.372 Sum_probs=83.1
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|++|+|||||+++|....- ...+ ..|+|+......+.+.
T Consensus 3 ~~~~kI~l---vG~~nvGKTsL~n~l~g~~~----------~~~~------~pg~tv~~~~~~~~~~------------- 50 (258)
T 3a1s_A 3 LHMVKVAL---AGCPNVGKTSLFNALTGTKQ----------YVAN------WPGVTVEKKEGVFTYK------------- 50 (258)
T ss_dssp CEEEEEEE---ECCTTSSHHHHHHHHHTTCE----------EEEE------CTTSCCEEEEEEEEET-------------
T ss_pred CCceEEEE---ECCCCCCHHHHHHHHHCCCC----------cccC------CCCceEEEEEEEEEEC-------------
Confidence 46789999 99999999999999942111 1111 1367777766666554
Q ss_pred CCCceeEEEEcCCCccchHH-----HH-HHHH--HhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSS-----EV-TAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~-----e~-~~~l--~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+..+.||||||+.+|.. .+ ...+ ..+|++++|+|+...- .....+.++...++|+++|+||+|+.
T Consensus 51 ---~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~--~~~~~~~~l~~~~~pvilv~NK~Dl~ 123 (258)
T 3a1s_A 51 ---GYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPE--QSLYLLLEILEMEKKVILAMTAIDEA 123 (258)
T ss_dssp ---TEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCH--HHHHHHHHHHTTTCCEEEEEECHHHH
T ss_pred ---CeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchh--hHHHHHHHHHhcCCCEEEEEECcCCC
Confidence 68999999999987753 12 2333 4789999999998742 23446677788899999999999986
No 103
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.31 E-value=4.4e-12 Score=125.66 Aligned_cols=112 Identities=20% Similarity=0.165 Sum_probs=81.2
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|+.|+|||||+++|+... ... + ..|+......+.+.
T Consensus 16 ~~~~~i~v---~G~~~~GKssl~~~l~~~~--~~~----------~-------~~t~~~~~~~~~~~------------- 60 (186)
T 1ksh_A 16 ERELRLLM---LGLDNAGKTTILKKFNGED--VDT----------I-------SPTLGFNIKTLEHR------------- 60 (186)
T ss_dssp -CCEEEEE---ECSTTSSHHHHHHHHTTCC--CSS----------C-------CCCSSEEEEEEEET-------------
T ss_pred CCeeEEEE---ECCCCCCHHHHHHHHhcCC--CCc----------c-------cccCccceEEEEEC-------------
Confidence 46799999 9999999999999995322 111 0 11222222333343
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHHh----CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~~~~~----~~~p~ilviNKiD~~ 155 (824)
+..+++|||||+.+|.......++.+|++++|+|+.+....... ..+..+.. .++|+++|+||+|+.
T Consensus 61 ---~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 132 (186)
T 1ksh_A 61 ---GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 132 (186)
T ss_dssp ---TEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred ---CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCC
Confidence 78999999999999988888888999999999999886544332 33344433 478999999999997
No 104
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.31 E-value=1.1e-11 Score=119.40 Aligned_cols=113 Identities=20% Similarity=0.237 Sum_probs=77.7
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeec-eEEEEEeechhhhhccccccC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~ 86 (824)
.++|++ +|+.|+|||||+++|+...-.-.. .+ |+... ...+.+ +
T Consensus 3 ~~~i~v---~G~~~~GKssl~~~l~~~~~~~~~--~~----------------~~~~~~~~~~~~--------------~ 47 (166)
T 2ce2_X 3 EYKLVV---VGAGGVGKSALTIQLIQNHFVDEC--DP----------------TIEDSYRKQVVI--------------D 47 (166)
T ss_dssp EEEEEE---EESTTSSHHHHHHHHHHSSCCSCC--CT----------------TCCEEEEEEEEE--------------T
T ss_pred eeEEEE---ECCCCCCHHHHHHHHHhCcCcccc--CC----------------ccceEEEEEEEE--------------C
Confidence 478999 999999999999999643211100 11 11111 111222 2
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHHh----CCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~~~~~----~~~p~ilviNKiD~~ 155 (824)
+..+.+.+|||||+.+|.......++.+|++++|+|+.+....... ..+..+.. .++|+++|+||+|+.
T Consensus 48 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~ 121 (166)
T 2ce2_X 48 GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA 121 (166)
T ss_dssp TEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS
T ss_pred CEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhh
Confidence 3357899999999999988888899999999999999875433322 22233322 378999999999987
No 105
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.31 E-value=6.4e-12 Score=125.72 Aligned_cols=113 Identities=22% Similarity=0.176 Sum_probs=76.3
Q ss_pred CceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccc
Q 003378 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 5 ~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (824)
..+.++|++ +|+.|+|||||+++|+. +.... . ..|+......+.+.
T Consensus 26 ~~~~~ki~v---~G~~~vGKSsLi~~l~~--~~~~~----------~-------~~t~~~~~~~~~~~------------ 71 (192)
T 2b6h_A 26 GKKQMRILM---VGLDAAGKTTILYKLKL--GEIVT----------T-------IPTIGFNVETVEYK------------ 71 (192)
T ss_dssp TTSCEEEEE---EESTTSSHHHHHHHHCS--SCCEE----------E-------EEETTEEEEEEEET------------
T ss_pred cCCccEEEE---ECCCCCCHHHHHHHHHh--CCccc----------c-------CCcCceeEEEEEEC------------
Confidence 356799999 99999999999999931 11110 0 01232222333333
Q ss_pred cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHHh----CCCceEEEEeCCCcc
Q 003378 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~~~~~----~~~p~ilviNKiD~~ 155 (824)
+..++||||||+.+|.......++.+|++|+|+|+.+.-..... ..+..+.. .++|+++|+||+|+.
T Consensus 72 ----~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 143 (192)
T 2b6h_A 72 ----NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMP 143 (192)
T ss_dssp ----TEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred ----CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCC
Confidence 78999999999999988888899999999999999876443332 23333333 378999999999997
No 106
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.30 E-value=4.3e-12 Score=123.34 Aligned_cols=117 Identities=19% Similarity=0.170 Sum_probs=74.5
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +|+.|+|||||+++|+...-.... . ..++.......+.+
T Consensus 4 ~~~~~i~v---~G~~~~GKssli~~l~~~~~~~~~--~--------------~t~~~~~~~~~~~~-------------- 50 (170)
T 1z08_A 4 AYSFKVVL---LGEGCVGKTSLVLRYCENKFNDKH--I--------------TTLGASFLTKKLNI-------------- 50 (170)
T ss_dssp CEEEEEEE---ECCTTSCHHHHHHHHHHCCCCSSC--C--------------CCCSCEEEEEEEES--------------
T ss_pred CcceEEEE---ECcCCCCHHHHHHHHHcCCCCcCC--C--------------CccceEEEEEEEEE--------------
Confidence 46799999 999999999999999643211000 0 01111111122222
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHH---HhCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQA---LGERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~---~~~~~p~ilviNKiD~~ 155 (824)
++....+.+|||||+.+|.......++.+|++++|+|+.+....+....| ..+ ...++|+++|+||+|+.
T Consensus 51 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 124 (170)
T 1z08_A 51 GGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124 (170)
T ss_dssp SSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG
T ss_pred CCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 23467899999999999988888888999999999999886544433322 222 23578999999999996
No 107
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.30 E-value=4.3e-12 Score=126.58 Aligned_cols=117 Identities=21% Similarity=0.143 Sum_probs=81.3
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +|+.++|||||+++|+...-.... ...++.+.....+.+
T Consensus 19 ~~~~ki~v---~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~-------------- 65 (191)
T 2a5j_A 19 SYLFKYII---IGDTGVGKSCLLLQFTDKRFQPVH----------------DLTIGVEFGARMVNI-------------- 65 (191)
T ss_dssp CEEEEEEE---ESSTTSSHHHHHHHHHHSCCCC---------------------CCSSEEEEEEEE--------------
T ss_pred CcceEEEE---ECcCCCCHHHHHHHHhcCCCCCCC----------------CCcccceeEEEEEEE--------------
Confidence 57799999 999999999999999653321110 001122222222222
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHHHHh---CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG---ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~-~l~~~~~---~~~p~ilviNKiD~~ 155 (824)
++....++||||||+.+|.......++.+|++|+|+|+.+....+... .+..+.. .++|+++|+||+|+.
T Consensus 66 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 139 (191)
T 2a5j_A 66 DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139 (191)
T ss_dssp TTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 223578999999999999888888999999999999998765444433 3333332 478999999999986
No 108
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.30 E-value=6.9e-12 Score=122.09 Aligned_cols=111 Identities=20% Similarity=0.228 Sum_probs=75.1
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
+++|++ +|+.|+|||||+++|....-. .+ ...++|+......+.+.
T Consensus 3 ~~~v~l---vG~~gvGKStL~~~l~~~~~~-----~~-----------~~~~~t~~~~~~~~~~~--------------- 48 (165)
T 2wji_A 3 SYEIAL---IGNPNVGKSTIFNALTGENVY-----IG-----------NWPGVTVEKKEGEFEYN--------------- 48 (165)
T ss_dssp EEEEEE---ECSTTSSHHHHHHHHHCCSSS-----CC----------------CCCCCEEEEEET---------------
T ss_pred ccEEEE---ECCCCCCHHHHHHHHhCCCee-----cc-----------CCCCcceeeeEEEEEEC---------------
Confidence 478999 999999999999999421110 11 01244554444444443
Q ss_pred CceeEEEEcCCCccchH------HHHHHHHH--hcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFS------SEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~------~e~~~~l~--~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+..+++|||||+.+|. .-....++ .+|++++|+|+... ......+..+.+.++|+++|.||+|+.
T Consensus 49 -~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 49 -GEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLA 121 (165)
T ss_dssp -TEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHH
T ss_pred -CcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhc
Confidence 6789999999998874 12233443 78999999999762 122334455666789999999999986
No 109
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.30 E-value=9e-12 Score=123.31 Aligned_cols=112 Identities=20% Similarity=0.150 Sum_probs=79.9
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +|+.|+|||||+++|... ... .+ ..|+......+.+.
T Consensus 14 ~~~~ki~i---vG~~~vGKSsL~~~l~~~--~~~-------~~----------~~t~g~~~~~~~~~------------- 58 (181)
T 1fzq_A 14 DQEVRILL---LGLDNAGKTTLLKQLASE--DIS-------HI----------TPTQGFNIKSVQSQ------------- 58 (181)
T ss_dssp SSCEEEEE---EESTTSSHHHHHHHHCCS--CCE-------EE----------EEETTEEEEEEEET-------------
T ss_pred CCceEEEE---ECCCCCCHHHHHHHHhcC--CCC-------cc----------cCcCCeEEEEEEEC-------------
Confidence 46789999 999999999999999321 110 00 01122122233332
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHH----hCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL----GERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~~~~----~~~~p~ilviNKiD~~ 155 (824)
+..+++|||||+.+|.......++.+|++++|+|+.+.-..... ..+..+. ..++|+++|+||+|+.
T Consensus 59 ---~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 130 (181)
T 1fzq_A 59 ---GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130 (181)
T ss_dssp ---TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTST
T ss_pred ---CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcc
Confidence 68999999999999998889999999999999999876443332 2333332 2578999999999997
No 110
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.30 E-value=3e-12 Score=127.77 Aligned_cols=117 Identities=16% Similarity=0.149 Sum_probs=82.7
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
+..++|++ +|+.++|||||+++|+...-..... . ..|++.... .+.+
T Consensus 21 ~~~~ki~v---~G~~~~GKSsli~~l~~~~~~~~~~-----~---------t~~~~~~~~--~~~~-------------- 67 (191)
T 3dz8_A 21 DYMFKLLI---IGNSSVGKTSFLFRYADDTFTPAFV-----S---------TVGIDFKVK--TVYR-------------- 67 (191)
T ss_dssp EECEEEEE---EESTTSSHHHHHHHHHHHTTCCCEE-----E---------EETTTEEEE--EEEE--------------
T ss_pred CeeeEEEE---ECCCCcCHHHHHHHHhcCCCCcccC-----C---------CeeeEEEEE--EEEE--------------
Confidence 56789999 9999999999999997543211110 0 001222222 2222
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHHh---CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG---ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~~~~~---~~~p~ilviNKiD~~ 155 (824)
++..+.++||||||+.+|.......++.+|++|+|+|+.+....... ..+..+.. .++|+++|+||+|+.
T Consensus 68 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 141 (191)
T 3dz8_A 68 HEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME 141 (191)
T ss_dssp TTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 23478899999999999999999999999999999999875443333 23333333 578999999999986
No 111
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.30 E-value=7e-12 Score=126.59 Aligned_cols=117 Identities=16% Similarity=0.175 Sum_probs=81.7
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
+..++|++ +|+.|+|||||+++|+...- ... .+ ..++++.....+.+.
T Consensus 24 ~~~~ki~l---vG~~~vGKSsLi~~l~~~~~--~~~-~~-------------~t~~~~~~~~~~~~~------------- 71 (201)
T 2ew1_A 24 DFLFKIVL---IGNAGVGKTCLVRRFTQGLF--PPG-QG-------------ATIGVDFMIKTVEIN------------- 71 (201)
T ss_dssp SEEEEEEE---EESTTSSHHHHHHHHHHSSC--CTT-CC-------------CCCSEEEEEEEEEET-------------
T ss_pred ccceEEEE---ECcCCCCHHHHHHHHHhCCC--CCC-CC-------------CccceeEEEEEEEEC-------------
Confidence 56799999 99999999999999964321 110 01 012222222233332
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHH---hCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~---~~~~p~ilviNKiD~~ 155 (824)
+..+.++||||||+.+|.......++.+|++|+|+|+..........-| ..+. ..++|+++|+||+|+.
T Consensus 72 -~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 144 (201)
T 2ew1_A 72 -GEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA 144 (201)
T ss_dssp -TEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred -CEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 2357899999999999998888899999999999999876544333323 2222 3468899999999986
No 112
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.30 E-value=1.9e-12 Score=147.61 Aligned_cols=114 Identities=26% Similarity=0.309 Sum_probs=84.9
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
..+|++ +|++|+|||||+++|+...-.+ + +...|+|.+.....+.|.
T Consensus 23 ~~~V~l---vG~~nvGKSTL~n~l~~~~~~~---------v------~~~~g~t~~~~~~~~~~~--------------- 69 (456)
T 4dcu_A 23 KPVVAI---VGRPNVGKSTIFNRIAGERISI---------V------EDTPGVTRDRIYSSAEWL--------------- 69 (456)
T ss_dssp CCEEEE---ECSSSSSHHHHHHHHEEEEEC--------------------------CEEEECTTC---------------
T ss_pred CCEEEE---ECCCCCcHHHHHHHHhCCCCcc---------c------CCCCCcceeEEEEEEEEC---------------
Confidence 357899 9999999999999993211100 1 112366666555544443
Q ss_pred CceeEEEEcCCC--------ccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPG--------HVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPG--------h~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+..+++||||| +..|...+..+++.+|++|+|+|+.+|.......+++.+.+.++|+++|+||+|+.
T Consensus 70 -~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 70 -NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp -SSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred -CceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 67899999999 67788888999999999999999999999999999999999999999999999986
No 113
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.29 E-value=1.6e-11 Score=132.40 Aligned_cols=116 Identities=16% Similarity=0.193 Sum_probs=83.9
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
..++|++ +|..|+|||||+++|+........ ...|.|+......+.+.
T Consensus 2 ~~~KI~l---vG~~~vGKSSLi~~l~~~~~~~~~---------------~~~~~Ti~~~~~~~~~~-------------- 49 (307)
T 3r7w_A 2 LGSKLLL---MGRSGSGKSSMRSIIFSNYSAFDT---------------RRLGATIDVEHSHLRFL-------------- 49 (307)
T ss_dssp CEEEEEE---ECCTTSSHHHHHHHHHSCCCTGGG---------------GGCCCCCSEEEEEEEET--------------
T ss_pred CceEEEE---ECCCCCCHHHHHHHHHhCCCCccc---------------cCcCCccceEEEEEEeC--------------
Confidence 3589999 999999999999998543222111 12345666655555442
Q ss_pred CCceeEEEEcCCCccch-----HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH----HH--hCCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDF-----SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ----AL--GERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df-----~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~----~~--~~~~p~ilviNKiD~~ 155 (824)
++..+++|||||+.+| .......++.+|++|+|+|+.+.........|.. +. ..++|+++|+||+|+.
T Consensus 50 -~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~ 128 (307)
T 3r7w_A 50 -GNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLV 128 (307)
T ss_dssp -TTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred -CceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeccccc
Confidence 2689999999999998 3445667789999999999998765555444322 22 2378999999999987
No 114
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.29 E-value=7.7e-12 Score=135.23 Aligned_cols=67 Identities=18% Similarity=0.227 Sum_probs=55.7
Q ss_pred ceeEEEEcCCCccc-------------hHHHHHHHHHhcCEEEEEEeC-CCCcchhHH-HHHHHHHhCCCceEEEEeCCC
Q 003378 89 EYLINLIDSPGHVD-------------FSSEVTAALRITDGALVVVDC-IEGVCVQTE-TVLRQALGERIRPVLTVNKMD 153 (824)
Q Consensus 89 ~~~i~liDTPGh~d-------------f~~e~~~~l~~~D~avlvvd~-~~gv~~~t~-~~l~~~~~~~~p~ilviNKiD 153 (824)
+..++||||||+.+ |...+..+++.+|++++|+|+ ..+...+.. .+++.+...+.|+++|+||+|
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~D 209 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLD 209 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTT
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcc
Confidence 57899999999864 667788899999999999997 566665553 677888788999999999999
Q ss_pred cc
Q 003378 154 RC 155 (824)
Q Consensus 154 ~~ 155 (824)
+.
T Consensus 210 l~ 211 (315)
T 1jwy_B 210 LM 211 (315)
T ss_dssp SS
T ss_pred cC
Confidence 97
No 115
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.29 E-value=4.1e-12 Score=125.59 Aligned_cols=112 Identities=19% Similarity=0.127 Sum_probs=80.4
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|+.++|||||+++|+...- .. + ..|+......+.+.
T Consensus 19 ~~~~~i~v---~G~~~~GKSsli~~l~~~~~--~~-------~----------~~t~~~~~~~~~~~------------- 63 (181)
T 2h17_A 19 SQEHKVII---VGLDNAGKTTILYQFSMNEV--VH-------T----------SPTIGSNVEEIVIN------------- 63 (181)
T ss_dssp --CEEEEE---EEETTSSHHHHHHHHHTTSC--EE-------E----------ECCSSSSCEEEEET-------------
T ss_pred CceeEEEE---ECCCCCCHHHHHHHHhcCCC--Cc-------c----------CCcCceeeEEEEEC-------------
Confidence 56789999 99999999999999953221 11 0 01222222334443
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHHh----CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~~~~~----~~~p~ilviNKiD~~ 155 (824)
+..+.||||||+.+|.......++.+|++|+|+|+.+.-..+.. ..+..+.. .++|+++|+||+|+.
T Consensus 64 ---~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 135 (181)
T 2h17_A 64 ---NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 135 (181)
T ss_dssp ---TEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred ---CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcc
Confidence 68999999999999988888889999999999999987444332 33444433 678999999999997
No 116
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.29 E-value=6.2e-12 Score=128.03 Aligned_cols=127 Identities=18% Similarity=0.091 Sum_probs=81.4
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
++.++|++ +|+.++|||||+++|+...- .. .. ...++++.....+.+..... .....
T Consensus 23 ~~~~ki~v---vG~~~~GKSsLi~~l~~~~~--~~----~~----------~~t~~~~~~~~~~~~~~~~~----~~~~~ 79 (217)
T 2f7s_A 23 DYLIKLLA---LGDSGVGKTTFLYRYTDNKF--NP----KF----------ITTVGIDFREKRVVYNAQGP----NGSSG 79 (217)
T ss_dssp SEEEEEEE---ESCTTSSHHHHHHHHHCSCC--CC----EE----------EEEEEEEEEEEEEEEEC-----------C
T ss_pred ceeEEEEE---ECcCCCCHHHHHHHHhcCCC--Cc----CC----------CCceeEEEEEEEEEECCccc----ccccc
Confidence 56799999 99999999999999953211 10 00 00011122222233321000 00000
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH-HHh----CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~-~~~----~~~p~ilviNKiD~~ 155 (824)
......++||||||+.+|.......++.+|++|+|+|+.+....+....|.. +.. .++|+++|+||+|+.
T Consensus 80 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 154 (217)
T 2f7s_A 80 KAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP 154 (217)
T ss_dssp CEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG
T ss_pred CceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccc
Confidence 1115789999999999999999999999999999999988655444433322 222 568899999999986
No 117
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.29 E-value=5.3e-12 Score=127.85 Aligned_cols=117 Identities=20% Similarity=0.148 Sum_probs=80.3
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +|+.++|||||+++|+...-.... ...++.......+.+.
T Consensus 18 ~~~~~i~v---~G~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~------------- 65 (213)
T 3cph_A 18 DSIMKILL---IGDSGVGKSCLLVRFVEDKFNPSF----------------ITTIGIDFKIKTVDIN------------- 65 (213)
T ss_dssp --CEEEEE---ECSTTSSHHHHHHHHHHCCCCCSS----------------SCCCSCCEEEEEEEET-------------
T ss_pred CcceEEEE---ECCCCCCHHHHHHHHHhCCCCccc----------------CCcccceEEEEEEEEC-------------
Confidence 45689999 999999999999999643211100 0112222222333332
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHHHHh---CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG---ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~-~l~~~~~---~~~p~ilviNKiD~~ 155 (824)
+..+.+.||||||+.+|.......++.+|++|+|+|+.+........ .+..+.. .++|+++|+||+|+.
T Consensus 66 -~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 66 -GKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp -TEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred -CEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 23478999999999999888888999999999999998765443332 2333332 378999999999984
No 118
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.28 E-value=3.7e-11 Score=120.79 Aligned_cols=115 Identities=23% Similarity=0.244 Sum_probs=79.9
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeec-eEEEEEeechhhhhccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~ 84 (824)
.+.++|++ +|+.|+|||||+++|+...- .....+ |+... ...+.+
T Consensus 12 ~~~~ki~v---~G~~~~GKSsli~~l~~~~~--~~~~~~----------------t~~~~~~~~~~~------------- 57 (206)
T 2bov_A 12 LALHKVIM---VGSGGVGKSALTLQFMYDEF--VEDYEP----------------TKADSYRKKVVL------------- 57 (206)
T ss_dssp CCEEEEEE---ECSTTSSHHHHHHHHHHSCC--CTTCCT----------------TCCEEEEEEEEE-------------
T ss_pred CceEEEEE---ECCCCCCHHHHHHHHHhCCC--CCCCCC----------------ccceEEEEEEEE-------------
Confidence 45689999 99999999999999965431 110011 11111 112222
Q ss_pred cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHH----hCCCceEEEEeCCCcc
Q 003378 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL----GERIRPVLTVNKMDRC 155 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~----~~~~p~ilviNKiD~~ 155 (824)
++..+.+.||||||+.+|.......++.+|++++|+|+.+.........| ..+. ..++|+++|+||+|+.
T Consensus 58 -~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (206)
T 2bov_A 58 -DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132 (206)
T ss_dssp -TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG
T ss_pred -CCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc
Confidence 22356899999999999999999999999999999999875443332222 2222 2478999999999986
No 119
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.28 E-value=3.3e-11 Score=122.71 Aligned_cols=127 Identities=17% Similarity=0.234 Sum_probs=82.0
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|+.|+|||||+++|+...-.... .. . ..|+... +
T Consensus 10 ~~~~~i~~---~G~~g~GKTsl~~~l~~~~~~~~~--~~------~-------~~~~~~~-----~-------------- 52 (218)
T 1nrj_B 10 SYQPSIII---AGPQNSGKTSLLTLLTTDSVRPTV--VS------Q-------EPLSAAD-----Y-------------- 52 (218)
T ss_dssp CCCCEEEE---ECSTTSSHHHHHHHHHHSSCCCBC--CC------S-------SCEEETT-----G--------------
T ss_pred CCCCEEEE---ECCCCCCHHHHHHHHhcCCCCCee--ee------c-------CceEEEE-----e--------------
Confidence 56789999 999999999999999654321100 00 0 0011000 0
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHh----cCEEEEEEeCC---CCcchhHHHHHHHHH------hCCCceEEEEeCC
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRI----TDGALVVVDCI---EGVCVQTETVLRQAL------GERIRPVLTVNKM 152 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~----~D~avlvvd~~---~gv~~~t~~~l~~~~------~~~~p~ilviNKi 152 (824)
....+++|||||+.+|.......++. +|++|+|+|+. +........+..... ..++|+++|+||+
T Consensus 53 --~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 130 (218)
T 1nrj_B 53 --DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKS 130 (218)
T ss_dssp --GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECT
T ss_pred --eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEch
Confidence 15689999999999998888888877 89999999998 222222222222221 2588999999999
Q ss_pred CcchhcccC-CHHHHHHHHHHHHH
Q 003378 153 DRCFLELQV-DGEEAYQTFQKVIE 175 (824)
Q Consensus 153 D~~~~~~~~-~~~~~~~~~~~~~~ 175 (824)
|+. .. ..+++.+.+++.+.
T Consensus 131 Dl~----~~~~~~~~~~~l~~~~~ 150 (218)
T 1nrj_B 131 ELF----TARPPSKIKDALESEIQ 150 (218)
T ss_dssp TST----TCCCHHHHHHHHHHHHH
T ss_pred Hhc----ccCCHHHHHHHHHHHHH
Confidence 997 54 33444444444333
No 120
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.28 E-value=4.3e-12 Score=125.00 Aligned_cols=115 Identities=21% Similarity=0.173 Sum_probs=76.0
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeece-EEEEEeechhhhhccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~ 84 (824)
.+.++|++ +|+.|+|||||+++|+...-.... .. |+.... ..+.+
T Consensus 4 ~~~~ki~~---~G~~~~GKSsli~~l~~~~~~~~~--~~----------------t~~~~~~~~~~~------------- 49 (181)
T 3t5g_A 4 SKSRKIAI---LGYRSVGKSSLTIQFVEGQFVDSY--DP----------------TIENTFTKLITV------------- 49 (181)
T ss_dssp EEEEEEEE---EESTTSSHHHHHHHHHHSSCCSCC--CT----------------TCCEEEEEEEEE-------------
T ss_pred CceEEEEE---ECcCCCCHHHHHHHHHcCCCCCCC--CC----------------CccccEEEEEEE-------------
Confidence 46789999 999999999999999643311100 11 111111 11112
Q ss_pred cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-----HHHHHHHhCCCceEEEEeCCCcc
Q 003378 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-----TVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-----~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
++..+.++||||||+.+|.......++.+|++++|+|+.+....... .+++.+...++|+++|+||+|+.
T Consensus 50 -~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 124 (181)
T 3t5g_A 50 -NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124 (181)
T ss_dssp -TTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCT
T ss_pred -CCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 23357889999999999876677788899999999999874333322 22233334578999999999985
No 121
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.28 E-value=3.5e-11 Score=127.65 Aligned_cols=123 Identities=15% Similarity=0.240 Sum_probs=77.4
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
..++|++ +|++|+|||||+++|+......... .+ .......++++......+.+.
T Consensus 7 ~~~~I~v---vG~~g~GKSTLin~L~~~~~~~~~~-~~-------~~~~~~~t~~~~~~~~~~~~~-------------- 61 (274)
T 3t5d_A 7 FEFTLMV---VGESGLGKSTLINSLFLTDLYSPEY-PG-------PSHRIKKTVQVEQSKVLIKEG-------------- 61 (274)
T ss_dssp CEEEEEE---EECTTSSHHHHHHHHSSSCC-----------------------CCCEEEEEEECC---------------
T ss_pred cEEEEEE---ECCCCCCHHHHHHHHhCCCccccCC-CC-------cccccCCceEEEEEEEEEecC--------------
Confidence 3589999 9999999999999984322111110 00 001112334444433333332
Q ss_pred CCceeEEEEcCCCccch-------HHHH-------HHHHHh-------------cCEEEEEEeCC-CCcchhHHHHHHHH
Q 003378 87 GNEYLINLIDSPGHVDF-------SSEV-------TAALRI-------------TDGALVVVDCI-EGVCVQTETVLRQA 138 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df-------~~e~-------~~~l~~-------------~D~avlvvd~~-~gv~~~t~~~l~~~ 138 (824)
+....++||||||+.++ ...+ ...++. +|.++++|++. .+.......+++.+
T Consensus 62 ~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l 141 (274)
T 3t5d_A 62 GVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL 141 (274)
T ss_dssp -CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHH
T ss_pred CeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 23468999999998432 2222 344443 77899888665 58888888888888
Q ss_pred HhCCCceEEEEeCCCcc
Q 003378 139 LGERIRPVLTVNKMDRC 155 (824)
Q Consensus 139 ~~~~~p~ilviNKiD~~ 155 (824)
.. ++|+|+|+||+|+.
T Consensus 142 ~~-~~pvi~V~nK~D~~ 157 (274)
T 3t5d_A 142 HE-KVNIIPLIAKADTL 157 (274)
T ss_dssp TT-TSCEEEEESSGGGS
T ss_pred hc-cCCEEEEEeccCCC
Confidence 77 89999999999986
No 122
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.28 E-value=1.4e-11 Score=122.35 Aligned_cols=115 Identities=22% Similarity=0.274 Sum_probs=70.1
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeec-eEEEEEeechhhhhccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~ 84 (824)
-+.++|++ +|+.|+|||||+++|+...- .....+ |+... ...+.+
T Consensus 19 ~~~~ki~v---vG~~~~GKSsli~~l~~~~~--~~~~~~----------------t~~~~~~~~~~~------------- 64 (190)
T 3con_A 19 MTEYKLVV---VGAGGVGKSALTIQLIQNHF--VDEYDP----------------TIEDSYRKQVVI------------- 64 (190)
T ss_dssp CEEEEEEE---ECSTTSSHHHHHHHHHHSSC--CSCCCT----------------TCCEEEEEEEEE-------------
T ss_pred cceeEEEE---ECcCCCCHHHHHHHHHcCCC--ccccCC----------------ccceEEEEEEEE-------------
Confidence 46689999 99999999999999975321 110011 11111 111222
Q ss_pred cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHH----hCCCceEEEEeCCCcc
Q 003378 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL----GERIRPVLTVNKMDRC 155 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~----~~~~p~ilviNKiD~~ 155 (824)
++..+.+.||||||+.+|.......++.+|++++|+|+.+.........| ..+. ..++|+++|+||+|+.
T Consensus 65 -~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 139 (190)
T 3con_A 65 -DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP 139 (190)
T ss_dssp -TTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS
T ss_pred -CCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCC
Confidence 22357799999999999998888999999999999999876544433333 2222 2478999999999987
No 123
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.27 E-value=7.5e-12 Score=126.00 Aligned_cols=119 Identities=15% Similarity=0.127 Sum_probs=61.4
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +|+.|+|||||+++|+............ .+.++.....+.+.
T Consensus 18 ~~~~~i~v---~G~~~~GKssli~~l~~~~~~~~~~~~~--------------t~~~~~~~~~~~~~------------- 67 (208)
T 2yc2_C 18 TLRCKVAV---VGEATVGKSALISMFTSKGSKFLKDYAM--------------TSGVEVVVAPVTIP------------- 67 (208)
T ss_dssp EEEEEEEE---C------------------------------------------------CEEEECT-------------
T ss_pred ccceEEEE---ECCCCCCHHHHHHHHHhCCCcccCCCCC--------------ccceEEEEEEEEEC-------------
Confidence 35689999 9999999999999996431111110000 01111222223332
Q ss_pred CCC--ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHh------CCCceEEEEeCCCcc
Q 003378 86 QGN--EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG------ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~--~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~~------~~~p~ilviNKiD~~ 155 (824)
+. .+.+.||||||+.+|.......++.+|++|+|+|+.++........| ..+.. .++|+++|+||+|+.
T Consensus 68 -~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 145 (208)
T 2yc2_C 68 -DTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLP 145 (208)
T ss_dssp -TSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC---
T ss_pred -CcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccc
Confidence 23 57899999999999998888889999999999999887654443333 33333 578999999999997
No 124
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.27 E-value=1.3e-11 Score=123.32 Aligned_cols=115 Identities=14% Similarity=0.165 Sum_probs=80.4
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceE-EEEEeechhhhhccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGI-SLYYEMTDAALKSYRGE 84 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~-~~~~~~~~~~~~~~~~~ 84 (824)
.+.++|++ +|+.|+|||||+++|+...- ...... |+..... .+.+
T Consensus 21 ~~~~ki~~---vG~~~~GKSsl~~~l~~~~~--~~~~~~----------------t~~~~~~~~~~~------------- 66 (194)
T 3reg_A 21 KKALKIVV---VGDGAVGKTCLLLAFSKGEI--PTAYVP----------------TVFENFSHVMKY------------- 66 (194)
T ss_dssp CEEEEEEE---ECSTTSSHHHHHHHHHHSCC--CSSCCC----------------CSEEEEEEEEEE-------------
T ss_pred ceeeEEEE---ECcCCCCHHHHHHHHhcCCC--CCccCC----------------eeeeeeEEEEEE-------------
Confidence 56799999 99999999999999965331 110011 1111111 1111
Q ss_pred cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHH-HHHh--CCCceEEEEeCCCcc
Q 003378 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLR-QALG--ERIRPVLTVNKMDRC 155 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~-~~~~--~~~p~ilviNKiD~~ 155 (824)
++..+.++||||||+.+|.......++.+|++|+|+|+.+....... ..|. .+.. .++|+++|+||+|+.
T Consensus 67 -~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 140 (194)
T 3reg_A 67 -KNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLR 140 (194)
T ss_dssp -TTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGC
T ss_pred -CCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 23467789999999999988888899999999999999986554442 3332 3332 368999999999986
No 125
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.27 E-value=1.2e-11 Score=122.66 Aligned_cols=112 Identities=19% Similarity=0.218 Sum_probs=78.5
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
++++|++ +|+.|+|||||+++|..... ...+ ..++|++.....+.+.
T Consensus 6 ~~~~i~l---vG~~gvGKStL~~~l~~~~~----------~~~~------~~~~t~~~~~~~~~~~-------------- 52 (188)
T 2wjg_A 6 KSYEIAL---IGNPNVGKSTIFNALTGENV----------YIGN------WPGVTVEKKEGEFEYN-------------- 52 (188)
T ss_dssp CEEEEEE---ECSTTSSHHHHHHHHHTTCE----------EEEE------CTTSCCEEEEEEEEET--------------
T ss_pred CCCEEEE---ECCCCCCHHHHHHHHhCCCc----------cccC------CCCeeccceEEEEEeC--------------
Confidence 5689999 99999999999999953211 0000 1245555554455553
Q ss_pred CCceeEEEEcCCCccchH------HHHHHHHH--hcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFS------SEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~------~e~~~~l~--~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+..+++|||||+.+|. ......++ .+|++++|+|+... ......+..+...++|+++|+||+|+.
T Consensus 53 --~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (188)
T 2wjg_A 53 --GEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLA 125 (188)
T ss_dssp --TEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH--HHHHHHHHHHHTTTCCEEEEEECHHHH
T ss_pred --CcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhH--HHHHHHHHHHHhcCCCEEEEEEhhhcc
Confidence 6899999999999873 12333343 48999999998752 233345566677889999999999986
No 126
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.27 E-value=4.7e-12 Score=125.00 Aligned_cols=115 Identities=17% Similarity=0.173 Sum_probs=79.9
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeec-eEEEEEeechhhhhccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~ 84 (824)
.+.++|++ +|+.|+|||||+++|+... ....... |+... ...+.+
T Consensus 3 ~~~~~i~~---~G~~~~GKssl~~~l~~~~--~~~~~~~----------------t~~~~~~~~~~~------------- 48 (186)
T 1mh1_A 3 PQAIKCVV---VGDGAVGKTCLLISYTTNA--FPGEYIP----------------TVFDNYSANVMV------------- 48 (186)
T ss_dssp CEEEEEEE---ECSTTSSHHHHHHHHHHSS--CCSSCCC----------------CSCCEEEEEEEE-------------
T ss_pred CcEEEEEE---ECCCCCCHHHHHHHHHcCC--CCCCcCC----------------cccceeEEEEEE-------------
Confidence 36789999 9999999999999996432 1110000 11100 111122
Q ss_pred cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HH-HHHHhC--CCceEEEEeCCCcc
Q 003378 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALGE--RIRPVLTVNKMDRC 155 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~-~l-~~~~~~--~~p~ilviNKiD~~ 155 (824)
++....+.||||||+.+|.......++.+|++++|+|+.++...+... .| ..+... ++|+++|+||+|+.
T Consensus 49 -~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 122 (186)
T 1mh1_A 49 -DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 122 (186)
T ss_dssp -TTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHH
T ss_pred -CCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEccccc
Confidence 234678889999999999877778889999999999998865554443 23 333332 88999999999997
No 127
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.27 E-value=7.5e-12 Score=122.23 Aligned_cols=115 Identities=16% Similarity=0.145 Sum_probs=70.3
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
..++|++ +|+.|+|||||+++|+...-..... ..|.+.... .+.+ +
T Consensus 3 ~~~ki~i---~G~~~vGKSsl~~~l~~~~~~~~~~---------------~~~~~~~~~--~~~~--------------~ 48 (175)
T 2nzj_A 3 ALYRVVL---LGDPGVGKTSLASLFAGKQERDLHE---------------QLGEDVYER--TLTV--------------D 48 (175)
T ss_dssp CEEEEEE---ECCTTSSHHHHHHHHHCC-----CC---------------CSSSSEEEE--EEEE--------------T
T ss_pred eEEEEEE---ECCCCccHHHHHHHHhcCCCccccC---------------ccccceeEE--EEEE--------------C
Confidence 4689999 9999999999999995321111000 112332222 2222 2
Q ss_pred CCceeEEEEcCCCccch--HHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHHhC----CCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDF--SSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALGE----RIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df--~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~~~~~~----~~p~ilviNKiD~~ 155 (824)
+....+.+|||||+.++ .......++.+|++++|+|..+....... ..+..+... ++|+++|+||+|+.
T Consensus 49 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~ 124 (175)
T 2nzj_A 49 GEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLA 124 (175)
T ss_dssp TEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCT
T ss_pred CEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhc
Confidence 23568999999999884 34445566789999999999875443333 233444443 78999999999996
No 128
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.27 E-value=4.4e-11 Score=126.59 Aligned_cols=116 Identities=13% Similarity=0.159 Sum_probs=76.2
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +|+.|+|||||+++|+...-...... .+.|.......+.+.
T Consensus 37 ~~~~~I~v---vG~~g~GKSSLin~l~~~~~~~~~~~---------------~~~t~~~~~~~~~~~------------- 85 (270)
T 1h65_A 37 VNSLTILV---MGKGGVGKSSTVNSIIGERVVSISPF---------------QSEGPRPVMVSRSRA------------- 85 (270)
T ss_dssp CCEEEEEE---EESTTSSHHHHHHHHHTSCCSCCCSS---------------SCCCSSCEEEEEEET-------------
T ss_pred CCCeEEEE---ECCCCCCHHHHHHHHhCCCcccccCC---------------CCcceeeEEEEEeeC-------------
Confidence 35789999 99999999999999974332111110 123333333344443
Q ss_pred CCCceeEEEEcCCCccchH---HHHHHHH------HhcCEEEEEEeCCC-CcchhHHHHHHHHHhC-C----CceEEEEe
Q 003378 86 QGNEYLINLIDSPGHVDFS---SEVTAAL------RITDGALVVVDCIE-GVCVQTETVLRQALGE-R----IRPVLTVN 150 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~---~e~~~~l------~~~D~avlvvd~~~-gv~~~t~~~l~~~~~~-~----~p~ilviN 150 (824)
+..++||||||+.+|. ......+ +.+|++|+|+|... ........+++.+... + +|+++|+|
T Consensus 86 ---~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~n 162 (270)
T 1h65_A 86 ---GFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALT 162 (270)
T ss_dssp ---TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEE
T ss_pred ---CeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEE
Confidence 7899999999998764 2222232 26899999988754 3444444555555432 2 68999999
Q ss_pred CCCcc
Q 003378 151 KMDRC 155 (824)
Q Consensus 151 KiD~~ 155 (824)
|+|+.
T Consensus 163 K~Dl~ 167 (270)
T 1h65_A 163 HAQFS 167 (270)
T ss_dssp CCSCC
T ss_pred CcccC
Confidence 99985
No 129
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.27 E-value=5.1e-12 Score=129.18 Aligned_cols=116 Identities=16% Similarity=0.152 Sum_probs=82.7
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcC-CcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAG-IIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g-~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (824)
...++|++ +|+.|+|||||+++|+...- ..... ..|.|.......+
T Consensus 13 ~~~~ki~v---~G~~~~GKSsli~~~~~~~~~~~~~~---------------t~~~~~~~~~~~~--------------- 59 (221)
T 3gj0_A 13 QVQFKLVL---VGDGGTGKTTFVKRHLTGEFEKKYVA---------------TLGVEVHPLVFHT--------------- 59 (221)
T ss_dssp CCEEEEEE---EECTTSSHHHHHTTBHHHHHTCEEET---------------TTTEEEEEEEEEE---------------
T ss_pred ccceEEEE---ECCCCCCHHHHHHHHHcCCCCCCCCC---------------ccceeEEEEEEEE---------------
Confidence 56789999 99999999999999653221 11010 1123333222221
Q ss_pred cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHH-Hh--CCCceEEEEeCCCcc
Q 003378 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA-LG--ERIRPVLTVNKMDRC 155 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~-~~--~~~p~ilviNKiD~~ 155 (824)
++..+.++||||||+.+|.......++.+|++|+|+|+.+....+....|... .. .++|+++|+||+|+.
T Consensus 60 -~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 132 (221)
T 3gj0_A 60 -NRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 132 (221)
T ss_dssp -TTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSS
T ss_pred -CCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccc
Confidence 22467899999999999988888899999999999999987665554444332 22 388999999999987
No 130
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.26 E-value=6.2e-12 Score=143.22 Aligned_cols=113 Identities=20% Similarity=0.219 Sum_probs=66.9
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
..++|++ +|++|+|||||+++|+.....+... ..|+|.+.....+.+.
T Consensus 232 ~~~kV~i---vG~~nvGKSSLln~L~~~~~a~vs~---------------~~gtT~d~~~~~i~~~-------------- 279 (476)
T 3gee_A 232 EGVSTVI---AGKPNAGKSTLLNTLLGQERAIVSH---------------MPGTTRDYIEECFIHD-------------- 279 (476)
T ss_dssp HCEEEEE---ECCTTSSHHHHHHHCC---------------------------------CEEEEET--------------
T ss_pred CCCEEEE---ECCCCCCHHHHHHHHhCCCCcccCC---------------CCCceEEEEEEEEEEC--------------
Confidence 3478999 9999999999999995443222111 1245555555555554
Q ss_pred CCceeEEEEcCCCccchHHHHH--------HHHHhcCEEEEEEeCCCCcch----hHHHHHHHHHhCCCceEEEEeCCCc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVT--------AALRITDGALVVVDCIEGVCV----QTETVLRQALGERIRPVLTVNKMDR 154 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~--------~~l~~~D~avlvvd~~~gv~~----~t~~~l~~~~~~~~p~ilviNKiD~ 154 (824)
++.++||||||+.++...+. ..++.+|++|+|+|+.++... ....++..+. ++|+|+|+||+|+
T Consensus 280 --g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl 355 (476)
T 3gee_A 280 --KTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDR 355 (476)
T ss_dssp --TEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTS
T ss_pred --CeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCC
Confidence 78999999999988765433 256789999999999998877 3444444332 7899999999999
Q ss_pred c
Q 003378 155 C 155 (824)
Q Consensus 155 ~ 155 (824)
.
T Consensus 356 ~ 356 (476)
T 3gee_A 356 A 356 (476)
T ss_dssp C
T ss_pred C
Confidence 8
No 131
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.26 E-value=5.4e-12 Score=127.05 Aligned_cols=117 Identities=20% Similarity=0.152 Sum_probs=79.2
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
+..++|++ +|+.++|||||+++|+...-... ....++.......+.+
T Consensus 23 ~~~~ki~v---~G~~~~GKSsLi~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~-------------- 69 (200)
T 2o52_A 23 DFLFKFLV---IGSAGTGKSCLLHQFIENKFKQD----------------SNHTIGVEFGSRVVNV-------------- 69 (200)
T ss_dssp CEEEEEEE---EESTTSSHHHHHHHHHC----------------------------CCEEEEEEEE--------------
T ss_pred CcceEEEE---ECcCCCCHHHHHHHHHhCCCCcc----------------CCCcccceeEEEEEEE--------------
Confidence 56799999 99999999999999953221100 0111222222222222
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHH---hCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~---~~~~p~ilviNKiD~~ 155 (824)
++....++||||||+.+|.......++.+|++|+|+|+.+....+....| ..+. ..++|+++|+||+|+.
T Consensus 70 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 143 (200)
T 2o52_A 70 GGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD 143 (200)
T ss_dssp TTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGG
T ss_pred CCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 22357899999999999887788899999999999999986554443333 2232 2478999999999986
No 132
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.26 E-value=2.2e-11 Score=121.83 Aligned_cols=116 Identities=16% Similarity=0.138 Sum_probs=78.8
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +|+.++|||||+++|+...-.... . .|+....... +. .
T Consensus 6 ~~~~ki~v---vG~~~~GKSsli~~l~~~~~~~~~--~----------------~t~~~~~~~~-~~------------~ 51 (199)
T 2gf0_A 6 SNDYRVVV---FGAGGVGKSSLVLRFVKGTFRDTY--I----------------PTIEDTYRQV-IS------------C 51 (199)
T ss_dssp CCCEEEEE---EECTTSSHHHHHHHHHHSCCCCTT--S----------------CCCCEEEEEE-EE------------E
T ss_pred CCeeEEEE---ECCCCCcHHHHHHHHHcCCCCCcc--c----------------CccccceeEE-EE------------E
Confidence 45689999 999999999999999652211000 0 0111111111 11 1
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHHh-----CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG-----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~~~~~-----~~~p~ilviNKiD~~ 155 (824)
++..+.+.||||||+.+|.......++.+|++|+|+|+.+....... ..|..+.. .++|+++|+||+|+.
T Consensus 52 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~ 127 (199)
T 2gf0_A 52 DKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDET 127 (199)
T ss_dssp TTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCS
T ss_pred CCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCC
Confidence 22367899999999999999899999999999999999875433222 23333322 378999999999987
No 133
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.25 E-value=1.2e-11 Score=123.14 Aligned_cols=129 Identities=19% Similarity=0.224 Sum_probs=81.3
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +|+.|+|||||+++|+...-.... .. . ..+++. .+
T Consensus 46 ~~~~~i~v---vG~~g~GKSsll~~l~~~~~~~~~--~~------~-----~~~~~~-------~~-------------- 88 (193)
T 2ged_A 46 SYQPSIII---AGPQNSGKTSLLTLLTTDSVRPTV--VS------Q-----EPLSAA-------DY-------------- 88 (193)
T ss_dssp CCCCEEEE---ECCTTSSHHHHHHHHHHSSCC--------------------------------CC--------------
T ss_pred CCCCEEEE---ECCCCCCHHHHHHHHhcCCCCccc--cc------C-----CCceee-------ee--------------
Confidence 45679999 999999999999999653311100 00 0 000111 01
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHh----cCEEEEEEeCCCCcchh--HHHHHHHHH-------hCCCceEEEEeCC
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRI----TDGALVVVDCIEGVCVQ--TETVLRQAL-------GERIRPVLTVNKM 152 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~----~D~avlvvd~~~gv~~~--t~~~l~~~~-------~~~~p~ilviNKi 152 (824)
....++||||||+.+|.......++. +|++|+|+|+....... ....+..+. ..++|+++|+||+
T Consensus 89 --~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 166 (193)
T 2ged_A 89 --DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKS 166 (193)
T ss_dssp --CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECT
T ss_pred --cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEch
Confidence 25678999999999887666666655 89999999998222111 112222221 1488999999999
Q ss_pred CcchhcccC-CHHHHHHHHHHHHHHh
Q 003378 153 DRCFLELQV-DGEEAYQTFQKVIENA 177 (824)
Q Consensus 153 D~~~~~~~~-~~~~~~~~~~~~~~~~ 177 (824)
|+. .. ..+++.+.+++.++.+
T Consensus 167 Dl~----~~~~~~~~~~~l~~~l~~l 188 (193)
T 2ged_A 167 ELF----TARPPSKIKDALESEIQKV 188 (193)
T ss_dssp TST----TCCCHHHHHHHHHHHHHHH
T ss_pred Hhc----CCCCHHHHHHHHHHHHHHH
Confidence 997 43 5566666666555543
No 134
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.25 E-value=3.4e-12 Score=126.88 Aligned_cols=112 Identities=21% Similarity=0.150 Sum_probs=79.7
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|+.++|||||+++|.. +.... . ..|+......+.+.
T Consensus 20 ~~~~~i~v---~G~~~~GKssli~~l~~--~~~~~----------~-------~~t~~~~~~~~~~~------------- 64 (189)
T 2x77_A 20 DRKIRVLM---LGLDNAGKTSILYRLHL--GDVVT----------T-------VPTVGVNLETLQYK------------- 64 (189)
T ss_dssp TSCEEEEE---EEETTSSHHHHHHHTCC--SCCEE----------E-------CSSTTCCEEEEEET-------------
T ss_pred CCceEEEE---ECCCCCCHHHHHHHHHc--CCCCC----------c-------CCCCceEEEEEEEC-------------
Confidence 46899999 99999999999999931 11110 0 11222223334443
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHHh----CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~~~~~----~~~p~ilviNKiD~~ 155 (824)
+..+++|||||+.+|.......++.+|++|+|+|+.+.-..... ..+..+.. .++|+++|+||+|+.
T Consensus 65 ---~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 136 (189)
T 2x77_A 65 ---NISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLP 136 (189)
T ss_dssp ---TEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTST
T ss_pred ---CEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCc
Confidence 78999999999998877777788899999999999876433322 23333333 478999999999997
No 135
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.25 E-value=4.5e-11 Score=122.97 Aligned_cols=115 Identities=18% Similarity=0.194 Sum_probs=74.5
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|..|+|||||+++|+... .. ..+. .+.|.......+.+.
T Consensus 27 ~~~~kI~v---vG~~~vGKSsLin~l~~~~--~~--------~~~~------~~~t~~~~~~~~~~~------------- 74 (228)
T 2qu8_A 27 PHKKTIIL---SGAPNVGKSSFMNIVSRAN--VD--------VQSY------SFTTKNLYVGHFDHK------------- 74 (228)
T ss_dssp TTSEEEEE---ECSTTSSHHHHHHHHTTTC--EE--------EECC-----------CEEEEEEEET-------------
T ss_pred CCCCEEEE---ECCCCCCHHHHHHHHhCCC--Cc--------cCCC------CCcceeeeeeeeecC-------------
Confidence 46789999 9999999999999994321 10 0110 122333332233332
Q ss_pred CCCceeEEEEcCCCcc------ch---HHHHHHHHHhcCEEEEEEeCCCCcchh---HHHHHHHHHhC--CCceEEEEeC
Q 003378 86 QGNEYLINLIDSPGHV------DF---SSEVTAALRITDGALVVVDCIEGVCVQ---TETVLRQALGE--RIRPVLTVNK 151 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~------df---~~e~~~~l~~~D~avlvvd~~~gv~~~---t~~~l~~~~~~--~~p~ilviNK 151 (824)
+..+.||||||+. .. ........+.+|++|+|+|+.+..... ....+..+... ++|+++|+||
T Consensus 75 ---~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK 151 (228)
T 2qu8_A 75 ---LNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNK 151 (228)
T ss_dssp ---TEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEEC
T ss_pred ---CCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeC
Confidence 6789999999993 31 112233467889999999999865533 22444555554 8899999999
Q ss_pred CCcc
Q 003378 152 MDRC 155 (824)
Q Consensus 152 iD~~ 155 (824)
+|+.
T Consensus 152 ~Dl~ 155 (228)
T 2qu8_A 152 IDKC 155 (228)
T ss_dssp GGGC
T ss_pred cccC
Confidence 9996
No 136
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.25 E-value=1.1e-12 Score=131.92 Aligned_cols=118 Identities=17% Similarity=0.169 Sum_probs=80.0
Q ss_pred CceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccc
Q 003378 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 5 ~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (824)
....++|++ +|+.++|||||+++|+ +.. ...+....++.+.....+.+.
T Consensus 30 ~~~~~ki~v---vG~~~~GKSsli~~l~-----------~~~-----~~~~~~~~~~~~~~~~~~~~~------------ 78 (199)
T 3l0i_B 30 YDYLFKLLL---IGDSGVGKSCLLLRFA-----------DDT-----YTESYISTIGVDFKIRTIELD------------ 78 (199)
T ss_dssp CSEEEEEEE---ECCTTSCCTTTTTSSB-----------CCC-----CCCHHHHHHCCSEEEEEEEET------------
T ss_pred cCcceEEEE---ECCCCCCHHHHHHHHh-----------cCC-----CCCCcCCcccceEEEEEEEEC------------
Confidence 367899999 9999999999999983 110 011112233444433444442
Q ss_pred cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHhC---CCceEEEEeCCCcc
Q 003378 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALGE---RIRPVLTVNKMDRC 155 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~~~---~~p~ilviNKiD~~ 155 (824)
+..+.++||||||+.+|.......++.+|++|+|+|+.+.........| ..+... ++|+++|+||+|+.
T Consensus 79 --~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 151 (199)
T 3l0i_B 79 --GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 151 (199)
T ss_dssp --TEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC
T ss_pred --CEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCC
Confidence 2357899999999999988788889999999999999987654444434 333332 78999999999986
No 137
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.24 E-value=6.6e-12 Score=123.80 Aligned_cols=112 Identities=21% Similarity=0.167 Sum_probs=77.1
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|+.|+|||||+++|+. +.... ...|+......+.+.
T Consensus 16 ~~~~~i~v---~G~~~~GKssli~~l~~--~~~~~-----------------~~~t~~~~~~~~~~~------------- 60 (183)
T 1moz_A 16 NKELRILI---LGLDGAGKTTILYRLQI--GEVVT-----------------TKPTIGFNVETLSYK------------- 60 (183)
T ss_dssp SSCEEEEE---EEETTSSHHHHHHHTCC--SEEEE-----------------ECSSTTCCEEEEEET-------------
T ss_pred CCccEEEE---ECCCCCCHHHHHHHHhc--CCcCc-----------------cCCcCccceEEEEEC-------------
Confidence 46899999 99999999999999931 11100 112333333334443
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHH----hCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL----GERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~~~~----~~~~p~ilviNKiD~~ 155 (824)
+..+++|||||+.+|.......++.+|++++|+|+.+.-..... ..+..+. ..++|+++|+||+|+.
T Consensus 61 ---~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 132 (183)
T 1moz_A 61 ---NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQP 132 (183)
T ss_dssp ---TEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTST
T ss_pred ---CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCC
Confidence 68999999999999888788888999999999999876443332 3334443 3578999999999997
No 138
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.24 E-value=7.2e-12 Score=128.41 Aligned_cols=117 Identities=19% Similarity=0.173 Sum_probs=79.2
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +|+.++|||||+++|+...-.... ...++.......+.+.
T Consensus 11 ~~~~ki~v---~G~~~vGKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~------------- 58 (223)
T 3cpj_B 11 DLLFKIVL---IGDSGVGKSNLLSRFTKNEFNMDS----------------KSTIGVEFATRTLEIE------------- 58 (223)
T ss_dssp CEEEEEEE---ESCTTSSHHHHHHHHHHCCCCC----------------------CCSEEEEEEEET-------------
T ss_pred CeeeEEEE---ECcCCCCHHHHHHHHhcCCCCCCC----------------CCcccceeEEEEEEEC-------------
Confidence 56789999 999999999999999653321111 0112222222233332
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHh---CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~~---~~~p~ilviNKiD~~ 155 (824)
+..+.+.||||||+.+|.......++.+|++|+|+|+.+....+....| ..+.. .++|+++|+||+|+.
T Consensus 59 -~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 131 (223)
T 3cpj_B 59 -GKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA 131 (223)
T ss_dssp -TEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG
T ss_pred -CEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 2347899999999999988788888999999999999887655443333 33332 378999999999986
No 139
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.24 E-value=1.4e-11 Score=122.90 Aligned_cols=115 Identities=18% Similarity=0.207 Sum_probs=80.8
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeece-EEEEEeechhhhhccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~ 84 (824)
...++|++ +|+.++|||||+++|+...- ...... |+.... ..+.+
T Consensus 16 ~~~~ki~v---~G~~~~GKssli~~l~~~~~--~~~~~~----------------t~~~~~~~~~~~------------- 61 (194)
T 2atx_A 16 ALMLKCVV---VGDGAVGKTCLLMSYANDAF--PEEYVP----------------TVFDHYAVSVTV------------- 61 (194)
T ss_dssp EEEEEEEE---EECTTSSHHHHHHHHHHSSC--CCSCCC----------------SSCCCEEEEEES-------------
T ss_pred CceEEEEE---ECCCCCCHHHHHHHHhcCCC--CCCCCC----------------cccceeEEEEEE-------------
Confidence 46789999 99999999999999975421 110011 111111 11222
Q ss_pred cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHH--HHHHHHhC--CCceEEEEeCCCcc
Q 003378 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET--VLRQALGE--RIRPVLTVNKMDRC 155 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~--~l~~~~~~--~~p~ilviNKiD~~ 155 (824)
++..+.++||||||+.+|.......++.+|++|+|+|+.+........ .+..+... ++|+++|+||+|+.
T Consensus 62 -~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 135 (194)
T 2atx_A 62 -GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLR 135 (194)
T ss_dssp -SSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTST
T ss_pred -CCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 234578999999999999888888889999999999998765443332 33444443 88999999999997
No 140
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.24 E-value=7.1e-12 Score=126.68 Aligned_cols=116 Identities=15% Similarity=0.091 Sum_probs=80.2
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|+.|+|||||+++|+...-.-.. .+ .+.......+.+
T Consensus 28 ~~~~ki~v---vG~~~~GKSsLi~~l~~~~~~~~~--~~---------------t~~~~~~~~~~~-------------- 73 (204)
T 4gzl_A 28 GQAIKCVV---VGDGAVGKTCLLISYTTNAFPGEY--IP---------------TVFDNYSANVMV-------------- 73 (204)
T ss_dssp --CEEEEE---EESTTSSHHHHHHHHHHSCCCC-C--CC---------------CSEEEEEEEEEC--------------
T ss_pred CCeEEEEE---ECcCCCCHHHHHHHHHhCCCCCCc--CC---------------eecceeEEEEEE--------------
Confidence 56799999 999999999999999643221111 11 111111111111
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HH-HHHHhC--CCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALGE--RIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~-~l-~~~~~~--~~p~ilviNKiD~~ 155 (824)
++..+.++||||||+.+|.......++.+|++|+|+|+.+....+... .| ..+... ++|+++|+||+|+.
T Consensus 74 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 147 (204)
T 4gzl_A 74 DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147 (204)
T ss_dssp C-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHH
T ss_pred CCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhc
Confidence 234677889999999999888888899999999999999876655543 33 333333 88999999999997
No 141
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.24 E-value=1.5e-11 Score=127.64 Aligned_cols=116 Identities=23% Similarity=0.248 Sum_probs=74.1
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +|+.|+|||||+++|+....... + ...+++|.......+.|.
T Consensus 27 ~~~~~i~l---vG~~g~GKStlin~l~g~~~~~~----~----------~~~~~~t~~~~~~~~~~~------------- 76 (239)
T 3lxx_A 27 NSQLRIVL---VGKTGAGKSATGNSILGRKVFHS----G----------TAAKSITKKCEKRSSSWK------------- 76 (239)
T ss_dssp -CEEEEEE---ECCTTSSHHHHHHHHHTSCCSCC---------------------CCSCEEEEEEET-------------
T ss_pred CCceEEEE---ECCCCCCHHHHHHHHcCCCcCcc----C----------CCCCceeeeEEEEEEEeC-------------
Confidence 45689999 99999999999999964322111 1 112345666555566664
Q ss_pred CCCceeEEEEcCCCccch-------HHHHHH----HHHhcCEEEEEEeCCCCcchhHHHHHHHHH-----hCCCceEEEE
Q 003378 86 QGNEYLINLIDSPGHVDF-------SSEVTA----ALRITDGALVVVDCIEGVCVQTETVLRQAL-----GERIRPVLTV 149 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df-------~~e~~~----~l~~~D~avlvvd~~~gv~~~t~~~l~~~~-----~~~~p~ilvi 149 (824)
+..++||||||+.+. ..++.+ +.+.+|++|+|+|+.. ........+..+. ....|+++|+
T Consensus 77 ---~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~ 152 (239)
T 3lxx_A 77 ---ETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIF 152 (239)
T ss_dssp ---TEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEE
T ss_pred ---CceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEE
Confidence 779999999997653 223333 3345699999999874 3334444433332 2346899999
Q ss_pred eCCCcc
Q 003378 150 NKMDRC 155 (824)
Q Consensus 150 NKiD~~ 155 (824)
||+|+.
T Consensus 153 nK~D~~ 158 (239)
T 3lxx_A 153 TRKDDL 158 (239)
T ss_dssp ECGGGC
T ss_pred eCCccC
Confidence 999987
No 142
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.24 E-value=6.6e-12 Score=142.47 Aligned_cols=113 Identities=21% Similarity=0.286 Sum_probs=75.9
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
..++|++ +|++|+|||||+++|+.....+.....| .|.+.....+.+.
T Consensus 223 ~~~kV~i---vG~~nvGKSSLln~L~~~~~a~v~~~~g---------------tT~d~~~~~i~~~-------------- 270 (462)
T 3geh_A 223 TGLKVAI---VGRPNVGKSSLLNAWSQSDRAIVTDLPG---------------TTRDVVESQLVVG-------------- 270 (462)
T ss_dssp HCEEEEE---EECTTSSHHHHHHHHHHHHBSCCSCCTT---------------CCHHHHHHEEEET--------------
T ss_pred CCCEEEE---EcCCCCCHHHHHHHHhCCCcccccCCCC---------------eeEEEEEEEEEEC--------------
Confidence 3478999 9999999999999998776544332233 3333322233343
Q ss_pred CCceeEEEEcCCCccchHHHHHH--------HHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTA--------ALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~--------~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
++.++||||||+.++...+.. .++.+|++|+|+|+..+...+...++..+.. .|+++|+||+|+.
T Consensus 271 --g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~--~piivV~NK~Dl~ 343 (462)
T 3geh_A 271 --GIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RPLILVMNKIDLV 343 (462)
T ss_dssp --TEEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT--SCEEEEEECTTSS
T ss_pred --CEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC--CcEEEEEECCCCC
Confidence 778999999999876544333 4578999999999999988888888777643 6999999999997
No 143
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.23 E-value=1.6e-11 Score=133.67 Aligned_cols=112 Identities=21% Similarity=0.148 Sum_probs=75.3
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|+.++|||||+++|+. +.+.. . ..|+......+.+.
T Consensus 163 ~~~~kI~i---vG~~~vGKSsLl~~l~~--~~~~~----------~-------~pT~~~~~~~~~~~------------- 207 (329)
T 3o47_A 163 KKEMRILM---VGLDAAGKTTILYKLKL--GEIVT----------T-------IPTIGFNVETVEYK------------- 207 (329)
T ss_dssp CCSEEEEE---EESTTSSHHHHHHHTCS--SCCEE----------E-------EEETTEEEEEEEET-------------
T ss_pred cCcceEEE---ECCCCccHHHHHHHHhC--CCCCC----------c-------ccccceEEEEEecC-------------
Confidence 35679999 99999999999999931 11110 0 01333333444443
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHH-Hh---CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQA-LG---ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~~~-~~---~~~p~ilviNKiD~~ 155 (824)
+..++||||||+.+|.......++.+|++|+|+|+.+....... ..|..+ .. .++|+|+|+||+|+.
T Consensus 208 ---~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~ 279 (329)
T 3o47_A 208 ---NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 279 (329)
T ss_dssp ---TEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred ---cEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCC
Confidence 78999999999999998899999999999999999764433222 223322 22 378999999999997
No 144
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.23 E-value=6.7e-12 Score=127.86 Aligned_cols=118 Identities=19% Similarity=0.231 Sum_probs=81.0
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +|+.|+|||||+++|+... ... ....|+........+.. .
T Consensus 9 ~~~~ki~v---vG~~~~GKSsli~~l~~~~--~~~----------------~~~~t~~~~~~~~~~~~-----------~ 56 (218)
T 4djt_A 9 ELTYKICL---IGDGGVGKTTYINRVLDGR--FEK----------------NYNATVGAVNHPVTFLD-----------D 56 (218)
T ss_dssp -CEEEEEE---ECCTTSSHHHHHCBCTTCS--TTC----------------EEETTTTEEEEEEEEEB-----------T
T ss_pred cCccEEEE---ECCCCCCHHHHHHHHhcCC--CCC----------------CCCCccceeeEEEEEEe-----------C
Confidence 46789999 9999999999999994211 100 00112222222222221 1
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH----HHHHhCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL----RQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l----~~~~~~~~p~ilviNKiD~~ 155 (824)
++..+.++||||||+.+|.......++.+|++|+|+|+.++...+....| ......++|+++|+||+|+.
T Consensus 57 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (218)
T 4djt_A 57 QGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130 (218)
T ss_dssp TSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC
T ss_pred CCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 12237899999999999988888889999999999999988666555333 22233478999999999987
No 145
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.23 E-value=5.5e-12 Score=122.15 Aligned_cols=113 Identities=17% Similarity=0.085 Sum_probs=62.1
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
.++|++ +|+.|+|||||+++|+........ ...|.+.. ..+.+ ++
T Consensus 2 ~~ki~~---vG~~~~GKSsli~~l~~~~~~~~~---------------~~~~~~~~---~~~~~--------------~~ 46 (166)
T 3q72_A 2 VYKVLL---LGAPGVGKSALARIFGGVEDGPEA---------------EAAGHTYD---RSIVV--------------DG 46 (166)
T ss_dssp CCEEEE---EESTTSSHHHHHHHHCCC-------------------------CEEE---EEEEE--------------TT
T ss_pred eEEEEE---ECCCCCCHHHHHHHHcCccccCCC---------------CccccceE---EEEEE--------------CC
Confidence 578999 999999999999999311100000 01122221 11112 23
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHHh----CCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~~~~~----~~~p~ilviNKiD~~ 155 (824)
....+.+|||||+.+|.......++.+|++++|+|..+.-..... ..+..+.. .++|+++|+||+|+.
T Consensus 47 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 119 (166)
T 3q72_A 47 EEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119 (166)
T ss_dssp EEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCC
T ss_pred EEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccc
Confidence 467899999999999988888899999999999999865433322 23344433 478999999999986
No 146
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.23 E-value=1.1e-11 Score=124.82 Aligned_cols=116 Identities=20% Similarity=0.176 Sum_probs=77.8
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|+.|+|||||+++|+...-.... . .|+.... ...+. .
T Consensus 22 ~~~~ki~v---vG~~~~GKSsli~~l~~~~~~~~~--~----------------~t~~~~~-~~~~~------------~ 67 (201)
T 3oes_A 22 VRYRKVVI---LGYRCVGKTSLAHQFVEGEFSEGY--D----------------PTVENTY-SKIVT------------L 67 (201)
T ss_dssp -CEEEEEE---EESTTSSHHHHHHHHHHSCCCSCC--C----------------CCSEEEE-EEEEC-------------
T ss_pred CCcEEEEE---ECCCCcCHHHHHHHHHhCCCCCCC--C----------------CccceEE-EEEEE------------E
Confidence 46789999 999999999999999653321111 0 0111111 11111 1
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHH----hCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL----GERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~----~~~~p~ilviNKiD~~ 155 (824)
++..+.++||||||+.+|.......++.+|++|+|+|+.+....+....| ..+. ..++|+++|+||+|+.
T Consensus 68 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 142 (201)
T 3oes_A 68 GKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS 142 (201)
T ss_dssp ---CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCG
T ss_pred CCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCc
Confidence 23478899999999999988888889999999999999875444333333 3332 2378999999999986
No 147
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.22 E-value=1.6e-11 Score=124.38 Aligned_cols=121 Identities=12% Similarity=0.082 Sum_probs=79.3
Q ss_pred CCCCCceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhc
Q 003378 1 MSSYCFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS 80 (824)
Q Consensus 1 ~~~~~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~ 80 (824)
|+......++|++ +|..++|||||+++|+...-.... . .|+.... ...+.
T Consensus 21 m~~~~~~~~ki~v---vG~~~vGKSsLi~~l~~~~~~~~~--~----------------~t~~~~~-~~~~~-------- 70 (205)
T 1gwn_A 21 MDPNQNVKCKIVV---VGDSQCGKTALLHVFAKDCFPENY--V----------------PTVFENY-TASFE-------- 70 (205)
T ss_dssp ------CEEEEEE---EESTTSSHHHHHHHHHHSCCCSSC--C----------------CCSEEEE-EEEEE--------
T ss_pred CCcccceeeEEEE---ECCCCCCHHHHHHHHhcCCCCCCc--C----------------CccceeE-EEEEE--------
Confidence 3333456799999 999999999999999653221000 0 1111111 11111
Q ss_pred cccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHH-HHHHh--CCCceEEEEeCCCcc
Q 003378 81 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQALG--ERIRPVLTVNKMDRC 155 (824)
Q Consensus 81 ~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l-~~~~~--~~~p~ilviNKiD~~ 155 (824)
.++....+.||||||+.+|.......++.+|++|+|+|+......... ..| ..+.. .++|+++|+||+|+.
T Consensus 71 ----~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 145 (205)
T 1gwn_A 71 ----IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 145 (205)
T ss_dssp ----SSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred ----ECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhc
Confidence 123467899999999999987777788999999999999875444332 233 33332 478999999999997
No 148
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.22 E-value=2.6e-11 Score=117.78 Aligned_cols=115 Identities=19% Similarity=0.140 Sum_probs=68.7
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
.++|++ +|+.|+|||||+++|+......... ...+.......+.+ ++
T Consensus 2 ~~ki~i---vG~~~~GKSsli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~--------------~~ 48 (169)
T 3q85_A 2 VFKVML---VGESGVGKSTLAGTFGGLQGDHAHE----------------MENSEDTYERRIMV--------------DK 48 (169)
T ss_dssp EEEEEE---ECSTTSSHHHHHHHHHCC----------------------------CEEEEEEEE--------------TT
T ss_pred cEEEEE---ECCCCCCHHHHHHHHHhccCccccc----------------CCCcCCeeeEEEEE--------------CC
Confidence 478999 9999999999999995322111100 00111222222222 23
Q ss_pred CceeEEEEcCCCccchHH-HHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHHh----CCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSS-EVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~-e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~~~~~----~~~p~ilviNKiD~~ 155 (824)
..+.+.+|||||+.+|.. .....++.+|++++|+|+.+.-..... ..+..+.. .++|+++|+||+|+.
T Consensus 49 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (169)
T 3q85_A 49 EEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122 (169)
T ss_dssp EEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG
T ss_pred eEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh
Confidence 467899999999999876 445567889999999999875333322 22233332 378999999999986
No 149
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.22 E-value=1.7e-11 Score=121.45 Aligned_cols=117 Identities=12% Similarity=0.074 Sum_probs=79.2
Q ss_pred CceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccc
Q 003378 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 5 ~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (824)
....++|++ +|+.|+|||||+++|+...-.... . .|+.... ...+.
T Consensus 4 ~~~~~ki~v---~G~~~vGKSsli~~l~~~~~~~~~--~----------------~t~~~~~-~~~~~------------ 49 (184)
T 1m7b_A 4 QNVKCKIVV---VGDSQCGKTALLHVFAKDCFPENY--V----------------PTVFENY-TASFE------------ 49 (184)
T ss_dssp --CEEEEEE---EESTTSSHHHHHHHHHHSCCCSSC--C----------------CCSEEEE-EEEEE------------
T ss_pred CceEEEEEE---ECCCCCCHHHHHHHHhcCCCCCCC--C----------------CccceeE-EEEEE------------
Confidence 356799999 999999999999999653211000 0 0111111 11111
Q ss_pred cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHH-HHHHh--CCCceEEEEeCCCcc
Q 003378 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQALG--ERIRPVLTVNKMDRC 155 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l-~~~~~--~~~p~ilviNKiD~~ 155 (824)
.++....+.||||||+.+|.......++.+|++|+|+|+......... ..| ..+.. .++|+++|+||+|+.
T Consensus 50 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 124 (184)
T 1m7b_A 50 IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 124 (184)
T ss_dssp CSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred ECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhh
Confidence 123467899999999999987777788999999999999876544433 233 33332 478999999999997
No 150
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.21 E-value=1.9e-11 Score=139.38 Aligned_cols=112 Identities=19% Similarity=0.297 Sum_probs=86.5
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
.++|++ +|.+|+|||||+++|+.....+..... |.|.+.....+.+.
T Consensus 243 ~~kV~i---vG~pnvGKSSLln~L~~~~~a~vs~~~---------------gTT~d~~~~~i~~~--------------- 289 (482)
T 1xzp_A 243 GLRMVI---VGKPNVGKSTLLNRLLNEDRAIVTDIP---------------GTTRDVISEEIVIR--------------- 289 (482)
T ss_dssp CEEEEE---ECCHHHHTCHHHHHHHHHTBCCCCCSS---------------CCSSCSCCEEEEET---------------
T ss_pred CCEEEE---ECcCCCcHHHHHHHHHCCCCCccCCCC---------------CeeeeeEEEEEecC---------------
Confidence 478999 999999999999999876543322222 34555444455554
Q ss_pred CceeEEEEcCCCcc-chH--------HHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHV-DFS--------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~-df~--------~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+..++||||||+. ++. ..+...++.+|++|+|+|+.++...+...+|+.+ .++|+|+|+||+|+.
T Consensus 290 -g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~ 363 (482)
T 1xzp_A 290 -GILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVV 363 (482)
T ss_dssp -TEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSC
T ss_pred -CeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccc
Confidence 7789999999998 653 3356788999999999999998877777777665 478999999999997
No 151
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.20 E-value=2.9e-11 Score=122.51 Aligned_cols=116 Identities=16% Similarity=0.069 Sum_probs=78.6
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +|+.|+|||||+++|+...- ...... |+.... ...+. .
T Consensus 7 ~~~~ki~i---~G~~~~GKTsli~~l~~~~~--~~~~~~----------------t~~~~~-~~~~~------------~ 52 (212)
T 2j0v_A 7 SKFIKCVT---VGDGAVGKTCMLICYTSNKF--PTDYIP----------------TVFDNF-SANVA------------V 52 (212)
T ss_dssp CCEEEEEE---EESTTSSHHHHHHHHHHSCC--CSSCCC----------------SSCCCE-EEEEE------------C
T ss_pred CceEEEEE---ECCCCCCHHHHHHHHhcCCC--CccCCC----------------ccceeE-EEEEE------------E
Confidence 46799999 99999999999999964321 110011 111111 11111 1
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HH-HHHHhC--CCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALGE--RIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~-~l-~~~~~~--~~p~ilviNKiD~~ 155 (824)
++..+.+.||||||+.+|.......++.+|++|+|+|+.+........ .| ..+... ++|+++|+||+|+.
T Consensus 53 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 126 (212)
T 2j0v_A 53 DGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR 126 (212)
T ss_dssp SSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHH
T ss_pred CCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhh
Confidence 234679999999999999888888899999999999998765444432 23 333332 88999999999987
No 152
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.20 E-value=2.3e-11 Score=122.44 Aligned_cols=116 Identities=13% Similarity=0.035 Sum_probs=79.4
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +|+.++|||||+++|....-.... .. .++.... ..+.+
T Consensus 23 ~~~~ki~v---vG~~~~GKSsli~~l~~~~~~~~~--~~--------------t~~~~~~-~~~~~-------------- 68 (201)
T 2gco_A 23 AIRKKLVI---VGDGACGKTCLLIVFSKDQFPEVY--VP--------------TVFENYI-ADIEV-------------- 68 (201)
T ss_dssp CEEEEEEE---EESTTSSHHHHHHHHHHSSCCSSC--CC--------------SSCCCCE-EEEEE--------------
T ss_pred ccceEEEE---ECCCCCCHHHHHHHHHhCcCCccc--CC--------------cccceEE-EEEEE--------------
Confidence 46789999 999999999999999653321110 00 0011110 11222
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH--HHHHHHHhC--CCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE--TVLRQALGE--RIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~--~~l~~~~~~--~~p~ilviNKiD~~ 155 (824)
++..+.+.||||||+.+|.......++.+|++|+|+|+...-..+.. ..+..+... ++|+++|+||+|+.
T Consensus 69 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 142 (201)
T 2gco_A 69 DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 142 (201)
T ss_dssp TTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGT
T ss_pred CCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhh
Confidence 22357899999999999988788888999999999999875433332 233334333 88999999999997
No 153
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.20 E-value=6.6e-11 Score=118.40 Aligned_cols=114 Identities=17% Similarity=0.165 Sum_probs=76.4
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeece-EEEEEeechhhhhccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~ 84 (824)
.+.++|++ +|+.++|||||+++|+...-.... . .|+.... ..+.+
T Consensus 26 ~~~~ki~v---~G~~~vGKSsli~~l~~~~~~~~~--~----------------~t~~~~~~~~~~~------------- 71 (196)
T 2atv_A 26 SAEVKLAI---FGRAGVGKSALVVRFLTKRFIWEY--D----------------PTLESTYRHQATI------------- 71 (196)
T ss_dssp -CCEEEEE---ECCTTSSHHHHHHHHHHSCCCSCC--C----------------TTCCEEEEEEEEE-------------
T ss_pred CCceEEEE---ECCCCCCHHHHHHHHHhCCCCccc--C----------------CCCCceEEEEEEE-------------
Confidence 45789999 999999999999999653221110 0 0111111 11122
Q ss_pred cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHH----HhCCCceEEEEeCCCcc
Q 003378 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQA----LGERIRPVLTVNKMDRC 155 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~~~----~~~~~p~ilviNKiD~~ 155 (824)
++..+.+.||||||+.+ .......++.+|++++|+|+.+.-..... ..+..+ ...++|+++|+||+|+.
T Consensus 72 -~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 145 (196)
T 2atv_A 72 -DDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD 145 (196)
T ss_dssp -TTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG
T ss_pred -CCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccc
Confidence 23467899999999998 66677888999999999999874332221 222222 23688999999999997
No 154
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.20 E-value=1.8e-11 Score=134.10 Aligned_cols=61 Identities=16% Similarity=0.110 Sum_probs=42.9
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
.++.++||||||+.++... ..+.+|++++|+|+..|...+.... ...++|.++|+||+|+.
T Consensus 147 ~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~Dl~ 207 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKDDGD 207 (341)
T ss_dssp TTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCCCTT
T ss_pred cCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECCCCC
Confidence 3678999999999887654 3589999999999987754332211 11256899999999987
No 155
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.19 E-value=4.7e-12 Score=124.64 Aligned_cols=116 Identities=16% Similarity=0.136 Sum_probs=73.4
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|+.|+|||||+++|+...- .....+ +..+ .... .+. .
T Consensus 6 ~~~~ki~v---~G~~~~GKssl~~~~~~~~~--~~~~~~--t~~~----------~~~~---~~~--------------~ 51 (182)
T 3bwd_D 6 SRFIKCVT---VGDGAVGKTCLLISYTSNTF--PTDYVP--TVFD----------NFSA---NVV--------------V 51 (182)
T ss_dssp -CCCEEEE---ECSTTSSHHHHHHHHHHSCC--C----------------------CBC---CCC---------------
T ss_pred CceEEEEE---ECCCCCCHHHHHHHHhcCCC--CCCCCC--eeee----------eEEE---EEE--------------E
Confidence 46789999 99999999999999964321 110000 0000 0000 000 1
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HH-HHHHh--CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALG--ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~-~l-~~~~~--~~~p~ilviNKiD~~ 155 (824)
++....++||||||+.+|.......++.+|++++|+|+.+........ .| ..+.. .++|+++|+||+|+.
T Consensus 52 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (182)
T 3bwd_D 52 NGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLR 125 (182)
T ss_dssp ------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHH
T ss_pred CCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhh
Confidence 223567889999999999888888899999999999998765444432 23 33332 378999999999987
No 156
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.19 E-value=1.2e-10 Score=115.90 Aligned_cols=115 Identities=17% Similarity=0.085 Sum_probs=74.2
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|..++|||||+++|+...- ..... .|+.... ...+. .
T Consensus 19 ~~~~ki~v---vG~~~vGKTsLi~~l~~~~~--~~~~~----------------~t~~~~~-~~~~~------------~ 64 (187)
T 3c5c_A 19 PLEVNLAI---LGRRGAGKSALTVKFLTKRF--ISEYD----------------PNLEDTY-SSEET------------V 64 (187)
T ss_dssp -CEEEEEE---ECCTTSSHHHHHHHHHHSSC--CSCCC----------------TTCCEEE-EEEEE------------E
T ss_pred CceEEEEE---ECCCCCcHHHHHHHHHhCCC--CcccC----------------CCcccee-eEEEE------------E
Confidence 56789999 99999999999999965331 11000 0111111 01111 1
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHHh------CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG------ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~~------~~~p~ilviNKiD~~ 155 (824)
++..+.+.||||||+.+|.. +...++.+|++|+|+|..+.-.......| ..+.. .++|+++|+||+|+.
T Consensus 65 ~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 140 (187)
T 3c5c_A 65 DHQPVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA 140 (187)
T ss_dssp TTEEEEEEEEECCC---CCC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG
T ss_pred CCEEEEEEEEECCCCCcchh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchh
Confidence 23467899999999988865 46788999999999999875444333322 33332 588999999999986
No 157
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.19 E-value=2.9e-11 Score=123.12 Aligned_cols=115 Identities=14% Similarity=0.136 Sum_probs=64.7
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeec-eEEEEEeechhhhhccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~ 84 (824)
.+.++|++ +|+.|+|||||+++|+... ...... -|+... ...+.+
T Consensus 32 ~~~~ki~v---vG~~~vGKSsli~~l~~~~--~~~~~~----------------~t~~~~~~~~~~~------------- 77 (214)
T 2j1l_A 32 VRSVKVVL---VGDGGCGKTSLLMVFADGA--FPESYT----------------PTVFERYMVNLQV------------- 77 (214)
T ss_dssp CCEEEEEE---EECTTSSHHHHHHHHHC---------C----------------CCCCEEEEEEEEE-------------
T ss_pred cceEEEEE---ECcCCCCHHHHHHHHHcCC--CCCCCC----------------CccceeEEEEEEE-------------
Confidence 46789999 9999999999999995321 111000 011111 111222
Q ss_pred cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HH-HHHHh--CCCceEEEEeCCCcc
Q 003378 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALG--ERIRPVLTVNKMDRC 155 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~-~l-~~~~~--~~~p~ilviNKiD~~ 155 (824)
++....++||||||+.+|.......++.+|++|+|+|+.+........ .| ..+.. .++|+++|+||+|+.
T Consensus 78 -~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 151 (214)
T 2j1l_A 78 -KGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLR 151 (214)
T ss_dssp -TTEEEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGG
T ss_pred -CCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhh
Confidence 234568999999999999988888999999999999998765444332 23 33322 378999999999997
No 158
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.19 E-value=2.4e-11 Score=122.90 Aligned_cols=116 Identities=13% Similarity=0.045 Sum_probs=78.1
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +|+.|+|||||+++|+...-.... .. ..+.+.. ..+.+
T Consensus 23 ~~~~ki~v---vG~~~~GKSsli~~l~~~~~~~~~--~~------------t~~~~~~---~~~~~-------------- 68 (207)
T 2fv8_A 23 MIRKKLVV---VGDGACGKTCLLIVFSKDEFPEVY--VP------------TVFENYV---ADIEV-------------- 68 (207)
T ss_dssp SEEEEEEE---EECTTSSHHHHHHHHHHSSCC---------------------CCEEE---EEEEE--------------
T ss_pred ccCcEEEE---ECcCCCCHHHHHHHHhcCCCCCcC--CC------------cccceEE---EEEEE--------------
Confidence 35689999 999999999999999653221100 00 0011110 11122
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH--HHHHHHHhC--CCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE--TVLRQALGE--RIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~--~~l~~~~~~--~~p~ilviNKiD~~ 155 (824)
++....+.||||||+.+|.......++.+|++|+|+|+......... ..+..+... ++|+++|+||+|+.
T Consensus 69 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 142 (207)
T 2fv8_A 69 DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLR 142 (207)
T ss_dssp TTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGG
T ss_pred CCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhh
Confidence 22357899999999999987777888999999999999875433332 233333333 88999999999997
No 159
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.19 E-value=5.7e-11 Score=120.99 Aligned_cols=116 Identities=16% Similarity=0.123 Sum_probs=79.1
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +|..++|||||+++|+...-.... . -|+.... ..... .
T Consensus 25 ~~~~ki~v---vG~~~vGKSsL~~~l~~~~~~~~~--~----------------~t~~~~~-~~~~~------------~ 70 (214)
T 3q3j_B 25 VARCKLVL---VGDVQCGKTAMLQVLAKDCYPETY--V----------------PTVFENY-TACLE------------T 70 (214)
T ss_dssp --CEEEEE---ECSTTSSHHHHHHHHHHSCCCSSC--C----------------CCSEEEE-EEEEE------------C
T ss_pred cceEEEEE---ECcCCCCHHHHHHHHhcCCCCCCc--C----------------CeeeeeE-EEEEE------------E
Confidence 45689999 999999999999999653321110 0 0111111 11111 1
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhH-HHHH-HHHHh--CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVL-RQALG--ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t-~~~l-~~~~~--~~~p~ilviNKiD~~ 155 (824)
++..+.+.||||||+.+|.......++.+|++|+|+|+.+...... ...| ..+.. .++|+++|+||+|+.
T Consensus 71 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 144 (214)
T 3q3j_B 71 EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLR 144 (214)
T ss_dssp --CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGG
T ss_pred CCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 2346789999999999998888888999999999999998655544 2333 33333 378999999999997
No 160
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.18 E-value=2.1e-11 Score=128.97 Aligned_cols=111 Identities=19% Similarity=0.226 Sum_probs=76.2
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
..++|++ +|++|+|||||+++|....-. .| ++ .|+|+......+ +
T Consensus 2 ~~~kI~l---vG~~nvGKSTL~n~L~g~~~~-----v~-----~~------pg~tv~~~~~~~----------------~ 46 (272)
T 3b1v_A 2 SMTEIAL---IGNPNSGKTSLFNLITGHNQR-----VG-----NW------PGVTVERKSGLV----------------K 46 (272)
T ss_dssp -CEEEEE---ECCTTSSHHHHHHHHHCCCCC-----CC-----SS------SCCCCSCEEEEC----------------T
T ss_pred CceEEEE---ECCCCCCHHHHHHHHHCCCCc-----cc-----CC------CCCcEEEEEEEE----------------e
Confidence 3578999 999999999999999422110 11 11 155665433222 1
Q ss_pred CCceeEEEEcCCCccchH------HHHHHHHH--hcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFS------SEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~------~e~~~~l~--~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
. +..+++|||||+.+|. .-....++ .+|++++|+|++.. ......+.++...++|+++|+||+|+.
T Consensus 47 ~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~ 120 (272)
T 3b1v_A 47 K-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVL 120 (272)
T ss_dssp T-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHH
T ss_pred c-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhC
Confidence 2 5689999999998875 22334444 49999999999863 223344566777899999999999986
No 161
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.17 E-value=8.9e-11 Score=116.54 Aligned_cols=110 Identities=15% Similarity=0.146 Sum_probs=76.1
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|..|+|||||+++|+...-.... . .|.......+.+
T Consensus 18 ~~~~ki~i---vG~~~vGKSsL~~~~~~~~~~~~~-----------~-------~t~~~~~~~~~~-------------- 62 (184)
T 3ihw_A 18 GPELKVGI---VGNLSSGKSALVHRYLTGTYVQEE-----------S-------PEGGRFKKEIVV-------------- 62 (184)
T ss_dssp CCEEEEEE---ECCTTSCHHHHHHHHHHSSCCCCC-----------C-------TTCEEEEEEEEE--------------
T ss_pred CCeeEEEE---ECCCCCCHHHHHHHHhcCCCCCCc-----------C-------CCcceEEEEEEE--------------
Confidence 56799999 999999999999999643211000 0 011111112222
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHHh----CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~~~~~----~~~p~ilviNKiD~~ 155 (824)
++..+.+.||||||+.+|. .++.+|++++|+|+.+....+.. ..+..+.. .++|+++|.||+|+.
T Consensus 63 ~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 63 DGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS 132 (184)
T ss_dssp TTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCB
T ss_pred CCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 2345788899999999986 78889999999999987655553 33344443 467999999999984
No 162
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.17 E-value=7.2e-11 Score=137.04 Aligned_cols=66 Identities=18% Similarity=0.248 Sum_probs=59.0
Q ss_pred eeEEEEcCCCccc-----------hHHHHHHHHHhcCEEEEEEeCCC-CcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 90 YLINLIDSPGHVD-----------FSSEVTAALRITDGALVVVDCIE-GVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 90 ~~i~liDTPGh~d-----------f~~e~~~~l~~~D~avlvvd~~~-gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
..++||||||+.+ |...+..+++.+|++|+|+|+.. +...++..+++.+...+.|+++|+||+|+.
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~ 231 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMV 231 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGS
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCcc
Confidence 4689999999986 77888889999999999999988 678888888888888888999999999987
No 163
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.17 E-value=1.2e-10 Score=124.79 Aligned_cols=67 Identities=12% Similarity=0.179 Sum_probs=54.9
Q ss_pred ceeEEEEcCCCcc-------------chHHHHHHHHHhcCEEE-EEEeCCCCcchhHH-HHHHHHHhCCCceEEEEeCCC
Q 003378 89 EYLINLIDSPGHV-------------DFSSEVTAALRITDGAL-VVVDCIEGVCVQTE-TVLRQALGERIRPVLTVNKMD 153 (824)
Q Consensus 89 ~~~i~liDTPGh~-------------df~~e~~~~l~~~D~av-lvvd~~~gv~~~t~-~~l~~~~~~~~p~ilviNKiD 153 (824)
...++||||||+. .+...+..+++.+|.+| +|+|+..+...+.. .+++.+...+.|+++|+||+|
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~D 203 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD 203 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGG
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccc
Confidence 4689999999964 35566778888888777 69999998887775 467777778899999999999
Q ss_pred cc
Q 003378 154 RC 155 (824)
Q Consensus 154 ~~ 155 (824)
+.
T Consensus 204 l~ 205 (299)
T 2aka_B 204 LM 205 (299)
T ss_dssp GS
T ss_pred cC
Confidence 97
No 164
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.17 E-value=3.2e-11 Score=121.03 Aligned_cols=115 Identities=16% Similarity=0.121 Sum_probs=76.5
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeec-eEEEEEeechhhhhccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~ 84 (824)
...++|++ +|+.|+|||||+++|+... ...... .|+... ...+.+
T Consensus 18 ~~~~ki~~---~G~~~~GKssl~~~l~~~~--~~~~~~----------------~t~~~~~~~~~~~------------- 63 (201)
T 2q3h_A 18 GRGVKCVL---VGDGAVGKTSLVVSYTTNG--YPTEYI----------------PTAFDNFSAVVSV------------- 63 (201)
T ss_dssp --CEEEEE---ECSTTSSHHHHHHHHHC--------------------------CCSSEEEEEEEEE-------------
T ss_pred CcceEEEE---ECCCCCCHHHHHHHHHhCC--CCCCCC----------------CcccceeEEEEEE-------------
Confidence 56789999 9999999999999995322 111000 111111 111222
Q ss_pred cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HH-HHHHh--CCCceEEEEeCCCcc
Q 003378 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALG--ERIRPVLTVNKMDRC 155 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~-~l-~~~~~--~~~p~ilviNKiD~~ 155 (824)
++..+.+.||||||+.+|.......++.+|++|+|+|+.+........ .| ..+.. .++|+++|+||+|+.
T Consensus 64 -~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 137 (201)
T 2q3h_A 64 -DGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLR 137 (201)
T ss_dssp -TTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGG
T ss_pred -CCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhh
Confidence 223568889999999998877777889999999999998765444432 23 33332 388999999999997
No 165
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.14 E-value=1.1e-10 Score=117.00 Aligned_cols=117 Identities=19% Similarity=0.120 Sum_probs=76.2
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +|..|+|||||+++|......... ..+++.+.....+.+
T Consensus 21 ~~~~ki~v---vG~~~vGKSsLi~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~-------------- 67 (195)
T 3cbq_A 21 DGIFKVML---VGESGVGKSTLAGTFGGLQGDSAH----------------EPENPEDTYERRIMV-------------- 67 (195)
T ss_dssp -CEEEEEE---ECSTTSSHHHHHHHTCCEECCGGG----------------TTTSCTTEEEEEEEE--------------
T ss_pred CcEEEEEE---ECCCCCCHHHHHHHHHhccCCccC----------------CCCcccceEEEEEEE--------------
Confidence 45689999 999999999999999322111110 011222222222223
Q ss_pred CCCceeEEEEcCCCccchHH-HHHHHHHhcCEEEEEEeCCCCcchhHH-HHHHHHHh----CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSS-EVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~-e~~~~l~~~D~avlvvd~~~gv~~~t~-~~l~~~~~----~~~p~ilviNKiD~~ 155 (824)
++....+.+|||||+.+|.. .....++.+|++|+|+|..+....... ..+..+.. .++|+++|.||+|+.
T Consensus 68 ~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 143 (195)
T 3cbq_A 68 DKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 143 (195)
T ss_dssp TTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCT
T ss_pred CCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcc
Confidence 23457889999999988765 445667899999999999865433322 22233332 478999999999986
No 166
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.13 E-value=1.2e-10 Score=134.22 Aligned_cols=112 Identities=18% Similarity=0.170 Sum_probs=83.5
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|..++|||||+++|+.... .. . ..|+......+.+.
T Consensus 320 ~~~~ki~l---vG~~nvGKSsLl~~l~~~~~--~~--~---------------~~T~~~~~~~~~~~------------- 364 (497)
T 3lvq_E 320 NKEMRILM---LGLDAAGKTTILYKLKLGQS--VT--T---------------IPTVGFNVETVTYK------------- 364 (497)
T ss_dssp CCEEEEEE---ECSTTSSHHHHHHHHHHSSC--CC--C---------------CCCSSEEEEEEESS-------------
T ss_pred ccceeEEE---EcCCCCCHHHHHHHHhcCCC--CC--c---------------CCccceeEEEEEeC-------------
Confidence 45689999 99999999999999965431 11 0 01333333444443
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHHHHh----CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~-~l~~~~~----~~~p~ilviNKiD~~ 155 (824)
++.++||||||+.+|......+++.+|++|+|+|+++....+... .|..+.+ .++|+|+|+||+|+.
T Consensus 365 ---~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 436 (497)
T 3lvq_E 365 ---NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 436 (497)
T ss_dssp ---SCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSS
T ss_pred ---CEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCC
Confidence 789999999999999888888999999999999999875444433 2333332 478999999999997
No 167
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.12 E-value=4.5e-10 Score=114.64 Aligned_cols=117 Identities=20% Similarity=0.193 Sum_probs=78.9
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|..++|||||+.+++... .... ...|+.......... .
T Consensus 11 ~k~~Kivl---vGd~~VGKTsLi~r~~~~~--f~~~----------------~~~Tig~d~~~k~~~------------~ 57 (216)
T 4dkx_A 11 LRKFKLVF---LGEQSVGKTSLITRFMYDS--FDNT----------------YQATIGIDFLSKTMY------------L 57 (216)
T ss_dssp --CEEEEE---ECSTTSSHHHHHHHHHHSC--CC--------------------------CEEEEEE------------C
T ss_pred CCcEEEEE---ECcCCcCHHHHHHHHHhCC--CCCC----------------cCCccceEEEEEEEE------------e
Confidence 35689999 9999999999999996422 1110 011222222222222 2
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHH---HhCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQA---LGERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~---~~~~~p~ilviNKiD~~ 155 (824)
++..+.++||||+|+.+|.......++.+|++++|+|...--......-| ..+ ...++|+|||.||+|+.
T Consensus 58 ~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~ 131 (216)
T 4dkx_A 58 EDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA 131 (216)
T ss_dssp SSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCG
T ss_pred cceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchH
Confidence 34567899999999999999899999999999999999875444433333 222 24578899999999986
No 168
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.12 E-value=2.5e-10 Score=111.99 Aligned_cols=109 Identities=15% Similarity=0.159 Sum_probs=73.6
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeec-eEEEEEeechhhhhccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~ 84 (824)
.++++|++ +|..++|||||+++|+...-.... -|+... ...+.+
T Consensus 5 ~~~~ki~~---vG~~~vGKTsli~~l~~~~~~~~~-------------------~t~~~~~~~~~~~------------- 49 (178)
T 2iwr_A 5 IPELRLGV---LGDARSGKSSLIHRFLTGSYQVLE-------------------KTESEQYKKEMLV------------- 49 (178)
T ss_dssp CCEEEEEE---ECCGGGCHHHHHHHHHHSCCCCCS-------------------SCSSSEEEEEEEE-------------
T ss_pred CCceEEEE---ECCCCCCHHHHHHHHHhCCCCCcC-------------------CCcceeEEEEEEE-------------
Confidence 46799999 999999999999999653211100 011111 111222
Q ss_pred cCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HH---Hh---CCCceEEEEeCCCcc
Q 003378 85 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QA---LG---ERIRPVLTVNKMDRC 155 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~-~~---~~---~~~p~ilviNKiD~~ 155 (824)
++....++||||||+.+ ...++.+|++|+|+|+.+.........|. .+ .. .++|+++|.||+|+.
T Consensus 50 -~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 50 -DGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp -TTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred -CCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 22357899999999987 35678899999999998765544444432 22 22 378999999999984
No 169
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.70 E-value=7.5e-12 Score=126.19 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=79.6
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
.+.++|++ +|+.|+|||||+++|+... ....... +..+ .....+.+
T Consensus 28 ~~~~ki~v---~G~~~~GKSsli~~l~~~~--~~~~~~~--t~~~-------------~~~~~~~~-------------- 73 (204)
T 3th5_A 28 GQAIKCVV---VGDGAVGKTCLLISYTTNA--FPGEYIP--TVFD-------------NYSANVMV-------------- 73 (204)
Confidence 56799999 9999999999999995322 1110000 0000 00001111
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HH-HHHHhC--CCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALGE--RIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~-~l-~~~~~~--~~p~ilviNKiD~~ 155 (824)
++..+.++||||||+.+|.......++.+|++|+|+|+.+........ .| ..+... ++|+++|+||+|+.
T Consensus 74 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~ 147 (204)
T 3th5_A 74 DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147 (204)
Confidence 223567889999999999988888999999999999998875554442 33 333333 78999999999997
No 170
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.09 E-value=4.8e-10 Score=110.95 Aligned_cols=108 Identities=24% Similarity=0.312 Sum_probs=69.8
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
++|++ +|+.|+|||||+++|+... ... + ...|+|.... .+.+
T Consensus 2 ~ki~v---~G~~~~GKSsli~~l~~~~--~~~---~-----------~~~~~t~~~~--~~~~----------------- 43 (190)
T 2cxx_A 2 ATIIF---AGRSNVGKSTLIYRLTGKK--VRR---G-----------KRPGVTRKII--EIEW----------------- 43 (190)
T ss_dssp CEEEE---EEBTTSSHHHHHHHHHSCC--CSS---S-----------SSTTCTTSCE--EEEE-----------------
T ss_pred cEEEE---ECCCCCCHHHHHHHHhCcC--Ccc---C-----------CCCCccceeE--EEec-----------------
Confidence 57889 9999999999999995322 110 0 0123444332 2222
Q ss_pred ceeEEEEcCCC-----------ccchHHHHHHHHH----hcCEEEEEEeCCCC-----------cchhHHHHHHHHHhCC
Q 003378 89 EYLINLIDSPG-----------HVDFSSEVTAALR----ITDGALVVVDCIEG-----------VCVQTETVLRQALGER 142 (824)
Q Consensus 89 ~~~i~liDTPG-----------h~df~~e~~~~l~----~~D~avlvvd~~~g-----------v~~~t~~~l~~~~~~~ 142 (824)
. .+++||||| +..|.......++ .++.++.|+|+... ...++..++..+...+
T Consensus 44 ~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (190)
T 2cxx_A 44 K-NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD 122 (190)
T ss_dssp T-TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTT
T ss_pred C-CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcC
Confidence 1 689999999 4556555555544 45677777776542 2223344556666788
Q ss_pred CceEEEEeCCCcc
Q 003378 143 IRPVLTVNKMDRC 155 (824)
Q Consensus 143 ~p~ilviNKiD~~ 155 (824)
+|+++|+||+|+.
T Consensus 123 ~piilv~nK~Dl~ 135 (190)
T 2cxx_A 123 IPTIVAVNKLDKI 135 (190)
T ss_dssp CCEEEEEECGGGC
T ss_pred CceEEEeehHhcc
Confidence 9999999999997
No 171
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.00 E-value=8.8e-10 Score=131.50 Aligned_cols=66 Identities=20% Similarity=0.215 Sum_probs=54.4
Q ss_pred eeEEEEcCCCccc---hHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHH-HHHhCCCceEEEEeCCCcc
Q 003378 90 YLINLIDSPGHVD---FSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 90 ~~i~liDTPGh~d---f~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~-~~~~~~~p~ilviNKiD~~ 155 (824)
..++||||||+.+ ....+...++.+|++|+|+|+..+........|. .+...+.|+++|+||+|+.
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~ 243 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQV 243 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccc
Confidence 4699999999766 3455667889999999999999988877777775 4455688999999999986
No 172
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.97 E-value=7e-10 Score=109.85 Aligned_cols=120 Identities=17% Similarity=0.192 Sum_probs=71.5
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
.++|++ +|..|+|||||+++|....... .+ +....+.++.....+.+. ..++
T Consensus 2 ~~kv~i---vG~~gvGKStLl~~l~~~~~~~----~~----------~~~~t~g~~~~~~~~~~~-----------~~~~ 53 (184)
T 2zej_A 2 RMKLMI---VGNTGSGKTTLLQQLMKTKKSD----LG----------MQSATVGIDVKDWPIQIR-----------DKRK 53 (184)
T ss_dssp -CEEEE---ESCTTSSHHHHHHHHTCC-------------------------CSEEEEEEEC------------------
T ss_pred ceEEEE---ECCCCCCHHHHHHHHhcCCCcc----CC----------CcceeccEEeEEeeeccc-----------cCCC
Confidence 478999 9999999999999994211110 00 000011111111111110 0012
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcc-hhHHHHH-HHHHh--CCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-VQTETVL-RQALG--ERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~-~~t~~~l-~~~~~--~~~p~ilviNKiD~~ 155 (824)
....+.+|||||+.+|.......++.+|++++|+|.+++.. ......| ..+.. .+.|+++|.||+|+.
T Consensus 54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (184)
T 2zej_A 54 RDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVS 125 (184)
T ss_dssp --CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGC
T ss_pred CceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcc
Confidence 46789999999999888777778889999999999887632 2222222 22222 478889999999987
No 173
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.97 E-value=5e-10 Score=121.48 Aligned_cols=115 Identities=16% Similarity=0.128 Sum_probs=78.9
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
..++|++ +|..|+|||||+++|....- .....+ .+.......+.. +
T Consensus 154 ~~~~i~i---~G~~~~GKssli~~~~~~~~--~~~~~~---------------t~~~~~~~~~~~--------------~ 199 (332)
T 2wkq_A 154 ELIKCVV---VGDGAVGKTCLLISYTTNAF--PGEYIP---------------TVFDNYSANVMV--------------D 199 (332)
T ss_dssp TCEEEEE---EESTTSSHHHHHHHHHHSCC--CCSCCC---------------CSEEEEEEEEEE--------------T
T ss_pred ceeEEEE---ECCCCCChHHHHHHHHhCCC--CcccCC---------------cccceeEEEEEE--------------C
Confidence 4589999 99999999999999964321 110011 111111111111 2
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HH-HHHHhC--CCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALGE--RIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~-~l-~~~~~~--~~p~ilviNKiD~~ 155 (824)
+....++||||||+.+|.......++.+|++++|+|+.+........ .| ..+... ++|+++|+||+|+.
T Consensus 200 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 272 (332)
T 2wkq_A 200 GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLR 272 (332)
T ss_dssp TEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHH
T ss_pred CEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcc
Confidence 33567789999999999888888889999999999999876554432 23 333332 88999999999997
No 174
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.96 E-value=1.7e-09 Score=108.43 Aligned_cols=116 Identities=20% Similarity=0.190 Sum_probs=77.8
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
..++|++ +|+.|+|||||+++|....-.... ...+++......+.+.
T Consensus 4 ~~~kv~l---vG~~g~GKSTLl~~l~~~~~~~~~----------------~~t~~~~~~~~~i~~~-------------- 50 (199)
T 2f9l_A 4 YLFKVVL---IGDSGVGKSNLLSRFTRNEFNLES----------------KSTIGVEFATRSIQVD-------------- 50 (199)
T ss_dssp EEEEEEE---ESSTTSSHHHHHHHHHHSCCCC-------------------CCCSCEEEEEEEEET--------------
T ss_pred ceEEEEE---ECcCCCCHHHHHHHHhcCCCCCCC----------------CCccceeEEEEEEEEC--------------
Confidence 4689999 999999999999999643221111 0011122222233332
Q ss_pred CCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHH---hCCCceEEEEeCCCcc
Q 003378 87 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 155 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~---~~~~p~ilviNKiD~~ 155 (824)
+....+.+|||||+..|........+.+|++++|+|............| ..+. ..+.|+++++||+|+.
T Consensus 51 g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~ 123 (199)
T 2f9l_A 51 GKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 123 (199)
T ss_dssp TEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 2356788999999998876677777899999999999876554433233 2232 2467889999999986
No 175
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.94 E-value=1.8e-09 Score=109.72 Aligned_cols=118 Identities=20% Similarity=0.157 Sum_probs=72.5
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +|..++|||||+++|+.....+... . + ..|.+.. ...+.+
T Consensus 35 ~~~~kVvl---vG~~~vGKSSLl~r~~~~~~~~~~~---------~-~---~~g~d~~--~~~i~~-------------- 82 (211)
T 2g3y_A 35 NTYYRVVL---IGEQGVGKSTLANIFAGVHDSMDSD---------C-E---VLGEDTY--ERTLMV-------------- 82 (211)
T ss_dssp CCEEEEEE---ECCTTSSHHHHHHHHHCCCCTTCCC----------------CCTTEE--EEEEEE--------------
T ss_pred CCceEEEE---ECCCCCCHHHHHHHHHhCCCCCCCc---------C-C---ccceeeE--EEEEEE--------------
Confidence 45689999 9999999999999995322222110 0 0 0111111 112222
Q ss_pred CCCceeEEEEcCCCccch-HHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHHHHh----CCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDF-SSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df-~~e~~~~l~~~D~avlvvd~~~gv~~~t~~-~l~~~~~----~~~p~ilviNKiD~~ 155 (824)
++....+.++||+|.... ........+.+|++|+|+|..+--...... .+..+.. .++|+|+|.||+|+.
T Consensus 83 ~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 158 (211)
T 2g3y_A 83 DGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 158 (211)
T ss_dssp TTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCG
T ss_pred CCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHh
Confidence 233567889999998773 222233346789999999987643333222 2333432 378999999999986
No 176
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.94 E-value=8.4e-10 Score=120.35 Aligned_cols=112 Identities=19% Similarity=0.145 Sum_probs=74.3
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
+|++ +|.+++|||||+++|....- ...++ ...|.......+.+. ..
T Consensus 160 ~V~l---vG~~nvGKSTLln~L~~~~~----------~i~~~------~ftTl~p~~g~v~~~---------------~~ 205 (342)
T 1lnz_A 160 DVGL---VGFPSVGKSTLLSVVSSAKP----------KIADY------HFTTLVPNLGMVETD---------------DG 205 (342)
T ss_dssp CEEE---ESSTTSSHHHHHHHSEEECC----------EESST------TSSCCCCCEEEEECS---------------SS
T ss_pred eeee---eCCCCCCHHHHHHHHHcCCC----------ccccC------CccccCceEEEEEeC---------------CC
Confidence 5888 99999999999999832211 11111 123444444444443 23
Q ss_pred eeEEEEcCCCccc-------hHHHHHHHHHhcCEEEEEEeCCC---Ccch-hHHHHHHHHHh-----CCCceEEEEeCCC
Q 003378 90 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE---GVCV-QTETVLRQALG-----ERIRPVLTVNKMD 153 (824)
Q Consensus 90 ~~i~liDTPGh~d-------f~~e~~~~l~~~D~avlvvd~~~---gv~~-~t~~~l~~~~~-----~~~p~ilviNKiD 153 (824)
..+.|+||||+.+ +.....+.+..+|++|+|+|++. --.. ....++..+.. .++|+++|+||+|
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~D 285 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMD 285 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTT
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECcc
Confidence 6899999999754 44556667778999999999975 2222 22333444443 3789999999999
Q ss_pred cc
Q 003378 154 RC 155 (824)
Q Consensus 154 ~~ 155 (824)
+.
T Consensus 286 l~ 287 (342)
T 1lnz_A 286 MP 287 (342)
T ss_dssp ST
T ss_pred CC
Confidence 87
No 177
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.94 E-value=2.7e-09 Score=117.33 Aligned_cols=67 Identities=15% Similarity=0.170 Sum_probs=50.3
Q ss_pred ceeEEEEcCCCcc-------------chHHHHHHHHHhcC-EEEEEEeCCCCcchhHHH-HHHHHHhCCCceEEEEeCCC
Q 003378 89 EYLINLIDSPGHV-------------DFSSEVTAALRITD-GALVVVDCIEGVCVQTET-VLRQALGERIRPVLTVNKMD 153 (824)
Q Consensus 89 ~~~i~liDTPGh~-------------df~~e~~~~l~~~D-~avlvvd~~~gv~~~t~~-~l~~~~~~~~p~ilviNKiD 153 (824)
...++||||||.. .+...+..+++.++ .+++|+|+..+...+... +++.+...+.|.++|+||+|
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~D 208 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLD 208 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGG
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEecccc
Confidence 4689999999963 24445556666555 555677888777777653 77777778899999999999
Q ss_pred cc
Q 003378 154 RC 155 (824)
Q Consensus 154 ~~ 155 (824)
+.
T Consensus 209 l~ 210 (353)
T 2x2e_A 209 LM 210 (353)
T ss_dssp GS
T ss_pred cc
Confidence 97
No 178
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.93 E-value=2.7e-09 Score=117.49 Aligned_cols=124 Identities=16% Similarity=0.244 Sum_probs=62.6
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
..++|++ +|+.|+|||||+++|+.. +.... + ..+....+....+++......+.+ +
T Consensus 36 ~~~~I~v---vG~~g~GKSTLln~L~~~-~~~~~---~---~~~~~~~~~~~ti~~~~~~~~~~~--------------~ 91 (361)
T 2qag_A 36 FEFTLMV---VGESGLGKSTLINSLFLT-DLYPE---R---VIPGAAEKIERTVQIEASTVEIEE--------------R 91 (361)
T ss_dssp CEECEEE---CCCTTSCHHHHHHHHTTC-CC---------------------CEEEEEEEEC------------------
T ss_pred CCEEEEE---EcCCCCCHHHHHHHHhCC-CCCCC---C---cccCCCcccCCceeEEEEEEEeec--------------C
Confidence 4578999 999999999999998432 11110 1 111111122223333222222222 1
Q ss_pred CCceeEEEEcCCCccchHHH-------HH-------HHHHhc-------------CEEEEEEeC-CCCcchhHHHHHHHH
Q 003378 87 GNEYLINLIDSPGHVDFSSE-------VT-------AALRIT-------------DGALVVVDC-IEGVCVQTETVLRQA 138 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~e-------~~-------~~l~~~-------------D~avlvvd~-~~gv~~~t~~~l~~~ 138 (824)
+....+++|||||+.|+... +. ..++.+ |+++++|++ ..+.......+++.+
T Consensus 92 ~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l 171 (361)
T 2qag_A 92 GVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI 171 (361)
T ss_dssp CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT
T ss_pred CcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh
Confidence 22457999999999554321 11 444433 357788876 566666555555544
Q ss_pred HhCCCceEEEEeCCCcc
Q 003378 139 LGERIRPVLTVNKMDRC 155 (824)
Q Consensus 139 ~~~~~p~ilviNKiD~~ 155 (824)
..++|+|+|+||+|+.
T Consensus 172 -~~~~piIlV~NK~Dl~ 187 (361)
T 2qag_A 172 -HNKVNIVPVIAKADTL 187 (361)
T ss_dssp -CS-SCEEEEEECCSSS
T ss_pred -ccCCCEEEEEECCCCC
Confidence 5789999999999987
No 179
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.92 E-value=3.3e-09 Score=106.97 Aligned_cols=113 Identities=22% Similarity=0.255 Sum_probs=72.6
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
...+|++ +|+.|+|||||+++|+.... .. .. ....|.|.... .+.+.
T Consensus 25 ~~~~v~l---vG~~g~GKSTLl~~l~g~~~-~~----------~~---~~~~G~~~~~~--~~~~~-------------- 71 (210)
T 1pui_A 25 TGIEVAF---AGRSNAGKSSALNTLTNQKS-LA----------RT---SKTPGRTQLIN--LFEVA-------------- 71 (210)
T ss_dssp CSEEEEE---EECTTSSHHHHHTTTCCC---------------------------CCEE--EEEEE--------------
T ss_pred CCcEEEE---ECCCCCCHHHHHHHHhCCCc-cc----------cc---cCCCccceeeE--EEEec--------------
Confidence 4468899 99999999999999931110 00 00 00123333221 12222
Q ss_pred CCceeEEEEcCCCccc----------hHHHHHHHH---HhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCC
Q 003378 87 GNEYLINLIDSPGHVD----------FSSEVTAAL---RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 153 (824)
Q Consensus 87 ~~~~~i~liDTPGh~d----------f~~e~~~~l---~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD 153 (824)
+ .+.++||||+.+ |...+...+ +.+|++++++|+..+.......++..+...++|.+++.||+|
T Consensus 72 --~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D 148 (210)
T 1pui_A 72 --D-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKAD 148 (210)
T ss_dssp --T-TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred --C-CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEeccc
Confidence 2 578999999853 222222333 578999999999988776666676777778999999999999
Q ss_pred cc
Q 003378 154 RC 155 (824)
Q Consensus 154 ~~ 155 (824)
+.
T Consensus 149 ~~ 150 (210)
T 1pui_A 149 KL 150 (210)
T ss_dssp GS
T ss_pred CC
Confidence 87
No 180
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.92 E-value=2.9e-09 Score=106.32 Aligned_cols=118 Identities=20% Similarity=0.167 Sum_probs=72.0
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +|..|+|||||+++|+.....+..... ..|.+.. ...+.+
T Consensus 4 ~~~~kv~l---vG~~~vGKSsL~~~~~~~~~~~~~~~~-------------~~~~~~~--~~~~~~-------------- 51 (192)
T 2cjw_A 4 MTYYRVVL---IGEQGVGKSTLANIFAGVHDSMDSDXE-------------VLGEDTY--ERTLMV-------------- 51 (192)
T ss_dssp CCEEEEEE---ECSTTSSHHHHHHHHHHHSCCC----G-------------GGCTTEE--EEEEEE--------------
T ss_pred CceEEEEE---ECCCCCCHHHHHHHHhcCcCCcCcccc-------------ccceeEE--EEEEEE--------------
Confidence 45689999 999999999999999754443221100 0111111 112222
Q ss_pred CCCceeEEEEcCCCccch-HHHHHHHHHhcCEEEEEEeCCCCcchhHHH-HHHHHH----hCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDF-SSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQAL----GERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df-~~e~~~~l~~~D~avlvvd~~~gv~~~t~~-~l~~~~----~~~~p~ilviNKiD~~ 155 (824)
++....+.++||+|...+ ........+.+|++++|+|..+--...... .+..+. ..++|+++|.||+|+.
T Consensus 52 ~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 127 (192)
T 2cjw_A 52 DGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 127 (192)
T ss_dssp TTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCG
T ss_pred CCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhh
Confidence 223567789999997652 222344567899999999988643333322 223232 2478999999999986
No 181
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.90 E-value=3.3e-09 Score=116.96 Aligned_cols=67 Identities=15% Similarity=0.179 Sum_probs=51.5
Q ss_pred ceeEEEEcCCCccch-------------HHHHHHHHHhcCEEEEEEeCCC-Ccc-hhHHHHHHHHHhCCCceEEEEeCCC
Q 003378 89 EYLINLIDSPGHVDF-------------SSEVTAALRITDGALVVVDCIE-GVC-VQTETVLRQALGERIRPVLTVNKMD 153 (824)
Q Consensus 89 ~~~i~liDTPGh~df-------------~~e~~~~l~~~D~avlvvd~~~-gv~-~~t~~~l~~~~~~~~p~ilviNKiD 153 (824)
...+.||||||..++ ...+..+++.+|++|+|+|+.. ... .....+++.+...+.|.|+|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 568999999998887 6667788899999999998643 222 2234455555567889999999999
Q ss_pred cc
Q 003378 154 RC 155 (824)
Q Consensus 154 ~~ 155 (824)
+.
T Consensus 215 l~ 216 (360)
T 3t34_A 215 LM 216 (360)
T ss_dssp GC
T ss_pred cC
Confidence 87
No 182
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.90 E-value=9e-09 Score=113.29 Aligned_cols=112 Identities=19% Similarity=0.251 Sum_probs=70.9
Q ss_pred eE-EEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 9 IS-VCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 9 i~-v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
++ |++ +|++|+|||||+++|....- .. +...+.|.+.....+.+.
T Consensus 179 ~~~V~l---vG~~naGKSTLln~L~~~~~-~~---------------~~~~~~T~d~~~~~i~~~--------------- 224 (364)
T 2qtf_A 179 IPSIGI---VGYTNSGKTSLFNSLTGLTQ-KV---------------DTKLFTTMSPKRYAIPIN--------------- 224 (364)
T ss_dssp CCEEEE---ECBTTSSHHHHHHHHHCC---------------------------CCSCEEEEEET---------------
T ss_pred CcEEEE---ECCCCCCHHHHHHHHHCCCc-cc---------------cCCcccccCCEEEEEEEC---------------
Confidence 44 888 99999999999999942211 00 011234555544555554
Q ss_pred CceeEEEEcCCCccc-----hH---HHHHHHHHhcCEEEEEEeCCCCc--ch-hHH---HHHHHHHhCCCceEEEEeCCC
Q 003378 88 NEYLINLIDSPGHVD-----FS---SEVTAALRITDGALVVVDCIEGV--CV-QTE---TVLRQALGERIRPVLTVNKMD 153 (824)
Q Consensus 88 ~~~~i~liDTPGh~d-----f~---~e~~~~l~~~D~avlvvd~~~gv--~~-~t~---~~l~~~~~~~~p~ilviNKiD 153 (824)
+..+.++||||+.+ +. ..+...++.+|.+++|+|+.+.. .. +.. .++......++|+|+|.||+|
T Consensus 225 -g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~D 303 (364)
T 2qtf_A 225 -NRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKID 303 (364)
T ss_dssp -TEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGG
T ss_pred -CEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCC
Confidence 57899999999732 11 22344578899999999998764 22 221 222333235789999999999
Q ss_pred cc
Q 003378 154 RC 155 (824)
Q Consensus 154 ~~ 155 (824)
+.
T Consensus 304 l~ 305 (364)
T 2qtf_A 304 KI 305 (364)
T ss_dssp GC
T ss_pred CC
Confidence 97
No 183
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.89 E-value=1.7e-09 Score=116.13 Aligned_cols=110 Identities=15% Similarity=0.192 Sum_probs=74.3
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
+|.+ +|..++|||||+.++. .+..... ....+.|+......+ . ..
T Consensus 1 KIvl---lGdsgvGKTSLl~~~~--~~~~~~~-------------~~~~~~Tig~~~~~v--~---------------~~ 45 (331)
T 3r7w_B 1 MVLL---MGVRRCGKSSICKVVF--HNMQPLD-------------TLYLESTSNPSLEHF--S---------------TL 45 (331)
T ss_dssp CEEE---ECSTTSSTTHHHHHHH--SCCCSGG-------------GTTCCCCCSCCCEEE--C---------------SS
T ss_pred CEEE---ECCCCCCHHHHHHHHH--cCCCCCc-------------cceecCeeeeeeEEE--c---------------cE
Confidence 4677 9999999999998652 2211110 001234444443332 2 24
Q ss_pred eeEEEEcCCCccchHH---HHHHHHHhcCEEEEEEeCCCCcchhHHHHHHH----HH--hCCCceEEEEeCCCcc
Q 003378 90 YLINLIDSPGHVDFSS---EVTAALRITDGALVVVDCIEGVCVQTETVLRQ----AL--GERIRPVLTVNKMDRC 155 (824)
Q Consensus 90 ~~i~liDTPGh~df~~---e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~----~~--~~~~p~ilviNKiD~~ 155 (824)
.+++||||||+.+|.. ......+.++++|+|+|..+. .......|.. +. ..++|+++|.||+|+.
T Consensus 46 v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~ 119 (331)
T 3r7w_B 46 IDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGL 119 (331)
T ss_dssp SCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSS
T ss_pred EEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccC
Confidence 7899999999999963 457788999999999999986 3334444432 21 2478999999999997
No 184
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.89 E-value=2.4e-09 Score=124.38 Aligned_cols=123 Identities=16% Similarity=0.194 Sum_probs=79.4
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
...++|++ +|..|+|||||+++|.... ... ...-|+.....+.... ....+.-..
T Consensus 39 ~~~~kV~l---vG~~~vGKSSLl~~l~~~~--~~~----------------~~~~t~g~~~~~~~~~----~~~~v~~~~ 93 (535)
T 3dpu_A 39 LQEIKVHL---IGDGMAGKTSLLKQLIGET--FDP----------------KESQTHGLNVVTKQAP----NIKGLENDD 93 (535)
T ss_dssp CCEEEEEE---ESSSCSSHHHHHHHHHC-----------------------------CCCEEEEEGG----GSGGGTTCS
T ss_pred ccceEEEE---ECCCCCCHHHHHHHHhcCC--CCC----------------CCCCccceEEEEeccc----cccceeecC
Confidence 45689999 9999999999999995221 100 0011221111111000 000001112
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhC--CCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~--~~p~ilviNKiD~~ 155 (824)
++++..++++||||+..|.......++.+|++|+|+|+..+ ......+..+.+. ++|+|+|+||+|+.
T Consensus 94 ~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~ 163 (535)
T 3dpu_A 94 ELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDEN 163 (535)
T ss_dssp TTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTC
T ss_pred CCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcc
Confidence 34578999999999999888778888999999999999865 3344455555554 48999999999986
No 185
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.85 E-value=7.7e-09 Score=113.86 Aligned_cols=115 Identities=20% Similarity=0.235 Sum_probs=72.9
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
....+|++ +|..|+|||||+++|..... ...+ ..+.|.......+.+.
T Consensus 165 ~~~~~v~l---vG~~gvGKSTLin~L~~~~~----------~~~~------~~~~t~~~~~~~~~~~------------- 212 (357)
T 2e87_A 165 LEIPTVVI---AGHPNVGKSTLLKALTTAKP----------EIAS------YPFTTRGINVGQFEDG------------- 212 (357)
T ss_dssp SSSCEEEE---ECSTTSSHHHHHHHHCSSCC----------EEEC------CTTCSSCEEEEEEEET-------------
T ss_pred CCCCEEEE---ECCCCCCHHHHHHHHhCCCC----------ccCC------CCCeeeceeEEEEEec-------------
Confidence 45678999 99999999999999932211 0000 0123333333333332
Q ss_pred CCCceeEEEEcCCCccchH--------HHHHHHH-HhcCEEEEEEeCCCCc--chhHH-HHHHHHHh--CCCceEEEEeC
Q 003378 86 QGNEYLINLIDSPGHVDFS--------SEVTAAL-RITDGALVVVDCIEGV--CVQTE-TVLRQALG--ERIRPVLTVNK 151 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~--------~e~~~~l-~~~D~avlvvd~~~gv--~~~t~-~~l~~~~~--~~~p~ilviNK 151 (824)
+..+.+|||||+.++. .....++ ..+|++++|+|+..+- ..... .++..+.. .++|+++|+||
T Consensus 213 ---~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK 289 (357)
T 2e87_A 213 ---YFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINK 289 (357)
T ss_dssp ---TEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred ---CceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 6789999999986542 1222233 3689999999987643 33332 33343332 27899999999
Q ss_pred CCcc
Q 003378 152 MDRC 155 (824)
Q Consensus 152 iD~~ 155 (824)
+|+.
T Consensus 290 ~Dl~ 293 (357)
T 2e87_A 290 IDVA 293 (357)
T ss_dssp TTTC
T ss_pred cccC
Confidence 9987
No 186
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.81 E-value=1.1e-08 Score=101.97 Aligned_cols=117 Identities=20% Similarity=0.170 Sum_probs=77.5
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhcccccc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 85 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 85 (824)
+..++|++ +|+.|+|||||+++|....-..... ..++.......+.+.
T Consensus 27 ~~~~kv~l---vG~~g~GKSTLl~~l~~~~~~~~~~----------------~t~~~~~~~~~i~~~------------- 74 (191)
T 1oix_A 27 DYLFKVVL---IGDSGVGKSNLLSRFTRNEFNLESK----------------STIGVEFATRSIQVD------------- 74 (191)
T ss_dssp SEEEEEEE---EECTTSSHHHHHHHHHHSCCCCSCC----------------CCCSEEEEEEEEEET-------------
T ss_pred CcceEEEE---ECcCCCCHHHHHHHHhcCCCCCCCC----------------CccceEEEEEEEEEC-------------
Confidence 45689999 9999999999999996433211110 011222222233332
Q ss_pred CCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH-HHHH---hCCCceEEEEeCCCcc
Q 003378 86 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 155 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l-~~~~---~~~~p~ilviNKiD~~ 155 (824)
+....+.++||||+..|...+....+.+|++++|+|............| ..+. ..+.|+++++||+|+.
T Consensus 75 -g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~ 147 (191)
T 1oix_A 75 -GKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 147 (191)
T ss_dssp -TEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred -CEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 2345677899999998877777788899999999998865433322222 2222 2467889999999986
No 187
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.79 E-value=4.9e-09 Score=116.73 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=24.6
Q ss_pred ceeEEEEcCCCccchHH-------HHHHHHHhcCEEEEEEeCCCC
Q 003378 89 EYLINLIDSPGHVDFSS-------EVTAALRITDGALVVVDCIEG 126 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~-------e~~~~l~~~D~avlvvd~~~g 126 (824)
...++||||||+.++.. ....+++.+|++++|+|+.++
T Consensus 70 ~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 70 LIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred eEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 36799999999876422 122346899999999999876
No 188
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.74 E-value=2.8e-08 Score=117.87 Aligned_cols=67 Identities=13% Similarity=0.161 Sum_probs=54.1
Q ss_pred ceeEEEEcCCCccc-------------hHHHHHHHH-HhcCEEEEEEeCCCCcchhHH-HHHHHHHhCCCceEEEEeCCC
Q 003378 89 EYLINLIDSPGHVD-------------FSSEVTAAL-RITDGALVVVDCIEGVCVQTE-TVLRQALGERIRPVLTVNKMD 153 (824)
Q Consensus 89 ~~~i~liDTPGh~d-------------f~~e~~~~l-~~~D~avlvvd~~~gv~~~t~-~~l~~~~~~~~p~ilviNKiD 153 (824)
...+.||||||... +...+..++ ..+|.+++|+|+..+...+.. .+++.+...+.|.|+|+||+|
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiD 228 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD 228 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTT
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcc
Confidence 55799999999643 223344444 468999999999999888887 688888888999999999999
Q ss_pred cc
Q 003378 154 RC 155 (824)
Q Consensus 154 ~~ 155 (824)
+.
T Consensus 229 lv 230 (772)
T 3zvr_A 229 LM 230 (772)
T ss_dssp SS
T ss_pred cC
Confidence 97
No 189
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.73 E-value=5.6e-09 Score=114.81 Aligned_cols=61 Identities=18% Similarity=0.152 Sum_probs=44.5
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
.++.+.||||||... .....+..+|.+|+|+|+..+...+... . ....+|.++|+||+|+.
T Consensus 170 ~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~--~--~~~~~p~ivVlNK~Dl~ 230 (355)
T 3p32_A 170 AGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK--K--GVLELADIVVVNKADGE 230 (355)
T ss_dssp TTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC--T--TSGGGCSEEEEECCCGG
T ss_pred CCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH--H--hHhhcCCEEEEECCCCc
Confidence 468899999999654 2233458999999999998776544322 1 11345999999999987
No 190
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.67 E-value=4.2e-08 Score=107.73 Aligned_cols=111 Identities=21% Similarity=0.279 Sum_probs=77.6
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
.+|+| +|.+|+|||||+++|......+. ++ -+.|++.....+.+.
T Consensus 73 a~V~i---vG~PNvGKSTL~n~Lt~~~~~v~----------~~------pftT~~~~~g~~~~~---------------- 117 (376)
T 4a9a_A 73 ASVGF---VGFPSVGKSTLLSKLTGTESEAA----------EY------EFTTLVTVPGVIRYK---------------- 117 (376)
T ss_dssp EEEEE---ECCCCHHHHHHHHHHHSBCCCGG----------GT------CSSCCCEEEEEEEET----------------
T ss_pred CeEEE---ECCCCCCHHHHHHHHhCCCCccc----------CC------CCceeeeeeEEEEeC----------------
Confidence 47999 99999999999999943221111 11 245666666666665
Q ss_pred ceeEEEEcCCCccc-------hHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHh-----CCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG-----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~d-------f~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~-----~~~p~ilviNKiD~~ 155 (824)
+..+.|+||||..+ ....+...++.+|.+++|||+.+.+.. ...+...+.. ...|.++++||+|+.
T Consensus 118 ~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~-~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 118 GAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHH-KQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp TEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHH-HHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred CcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHH-HHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 78999999999754 334577888999999999999875322 1222222322 356889999999984
No 191
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.62 E-value=2.7e-08 Score=113.42 Aligned_cols=134 Identities=17% Similarity=0.182 Sum_probs=74.5
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCc-ee--ecCC---------hhhHhHhccceeeceEEEEEeec
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGD-VR--MTDT---------RQDEAERGITIKSTGISLYYEMT 74 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~-~~--~~D~---------~~~E~~rgiTi~~~~~~~~~~~~ 74 (824)
.+..|++ +|+.|+|||||+++|++.... .|. +. ..|. .......++++.... ...+
T Consensus 100 ~~~vI~i---vG~~GvGKTTl~~kLA~~l~~-----~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~----~~~d 167 (504)
T 2j37_W 100 KQNVIMF---VGLQGSGKTTTCSKLAYYYQR-----KGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSY----TEMD 167 (504)
T ss_dssp --EEEEE---ECSTTSSHHHHHHHHHHHHHH-----TTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECC----CCSC
T ss_pred CCeEEEE---ECCCCCCHHHHHHHHHHHHHh-----CCCeEEEEeccccchhHHHHHHHHhhccCceEEccC----CCCC
Confidence 4567888 999999999999999865321 111 11 1111 111223444432210 0000
Q ss_pred hhhh-hccccccCCCceeEEEEcCCCcc----chHHHHHHHHH--hcCEEEEEEeCCCCcchhHHHHHHHHHhCCCce-E
Q 003378 75 DAAL-KSYRGERQGNEYLINLIDSPGHV----DFSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRP-V 146 (824)
Q Consensus 75 ~~~~-~~~~~~~~~~~~~i~liDTPGh~----df~~e~~~~l~--~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~-i 146 (824)
...+ ..........++.+.||||||+. ++..++....+ .+|.+++|||+..|.. ....++.... .+|+ +
T Consensus 168 p~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~-~~~i~g 244 (504)
T 2j37_W 168 PVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKD-KVDVAS 244 (504)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHH-HHCCCC
T ss_pred HHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHh-hcCceE
Confidence 0000 00000111136789999999986 45555544433 7899999999998854 2333333322 2775 7
Q ss_pred EEEeCCCcc
Q 003378 147 LTVNKMDRC 155 (824)
Q Consensus 147 lviNKiD~~ 155 (824)
+|+||+|..
T Consensus 245 vVlNK~D~~ 253 (504)
T 2j37_W 245 VIVTKLDGH 253 (504)
T ss_dssp EEEECTTSC
T ss_pred EEEeCCccc
Confidence 999999986
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.60 E-value=2.2e-08 Score=101.94 Aligned_cols=133 Identities=16% Similarity=0.153 Sum_probs=69.3
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCccc-----ccCCceeecCChhhHhHh-ccceeeceEEEEEeechhhhhc
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQ-----EVAGDVRMTDTRQDEAER-GITIKSTGISLYYEMTDAALKS 80 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~-----~~~g~~~~~D~~~~E~~r-giTi~~~~~~~~~~~~~~~~~~ 80 (824)
+...|++ +|+.|+|||||+++|+.......+ .+.+. ..| ....++ |+++..-.....+......+..
T Consensus 29 ~~~~i~i---~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~--~~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (221)
T 2wsm_A 29 GTVAVNI---MGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVS--KAD--YERVRRFGIKAEAISTGKECHLDAHMIYH 101 (221)
T ss_dssp TCEEEEE---EECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCC--HHH--HHHHHTTTCEEEECCCTTCSSCCHHHHHT
T ss_pred CceEEEE---EcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCC--chh--HHHHHhCCCcEEEecCCceeecccHHHHH
Confidence 3467888 999999999999999876432111 00110 011 111111 3321100000000000000000
Q ss_pred cccccCCCceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 81 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 81 ~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
... ...++.+.+|||||+.+--... -...+.+++|+|+..+.. ..|......+.|.++|+||+|+.
T Consensus 102 ~~~--~~~~~d~iiidt~G~~~~~~~~---~~~~~~~i~vvd~~~~~~----~~~~~~~~~~~~~iiv~NK~Dl~ 167 (221)
T 2wsm_A 102 RLK--KFSDCDLLLIENVGNLICPVDF---DLGENYRVVMVSVTEGDD----VVEKHPEIFRVADLIVINKVALA 167 (221)
T ss_dssp TGG--GGTTCSEEEEEEEEBSSGGGGC---CCSCSEEEEEEEGGGCTT----HHHHCHHHHHTCSEEEEECGGGH
T ss_pred HHH--hcCCCCEEEEeCCCCCCCCchh---ccccCcEEEEEeCCCcch----hhhhhhhhhhcCCEEEEecccCC
Confidence 000 2235789999999942110000 024688999999988743 23333444578999999999986
No 193
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.52 E-value=2.9e-08 Score=103.83 Aligned_cols=43 Identities=19% Similarity=0.251 Sum_probs=29.4
Q ss_pred hcCEEEEEEeCCCC--cchhHHHHH-HHH----HhCCCceEEEEeCCCcc
Q 003378 113 ITDGALVVVDCIEG--VCVQTETVL-RQA----LGERIRPVLTVNKMDRC 155 (824)
Q Consensus 113 ~~D~avlvvd~~~g--v~~~t~~~l-~~~----~~~~~p~ilviNKiD~~ 155 (824)
.+|++|+|+|+.+. -......-| ..+ ...++|+++|+||+|+.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 211 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEG 211 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGB
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccc
Confidence 58999999999875 333332222 222 23578999999999986
No 194
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.45 E-value=1.1e-07 Score=99.40 Aligned_cols=66 Identities=21% Similarity=0.085 Sum_probs=45.8
Q ss_pred ceeEEEEcCCCccchHHH------HHHHHHhcCEEEEEEeCCCCcchhHHH-H----HHHHHhCCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSE------VTAALRITDGALVVVDCIEGVCVQTET-V----LRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e------~~~~l~~~D~avlvvd~~~gv~~~t~~-~----l~~~~~~~~p~ilviNKiD~~ 155 (824)
++.+.||||||..++... +..++.. +.+|+|+|+..+....... . +......++|.++|+||+|+.
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~ 184 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLL 184 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGC
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEeccccc
Confidence 468999999999876432 2234445 7888999987765544332 1 122334578999999999986
No 195
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.40 E-value=8.7e-07 Score=98.82 Aligned_cols=112 Identities=22% Similarity=0.201 Sum_probs=67.5
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 89 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (824)
.|++ +|+.|+|||||+++|..... .+.++ ...|+......+.+. ..
T Consensus 159 ~VgL---VG~~gAGKSTLL~~Lsg~~~----------~i~~~------~ftTl~p~~G~V~~~---------------~~ 204 (416)
T 1udx_A 159 DVGL---VGYPNAGKSSLLAAMTRAHP----------KIAPY------PFTTLSPNLGVVEVS---------------EE 204 (416)
T ss_dssp SEEE---ECCGGGCHHHHHHHHCSSCC----------EECCC------TTCSSCCEEEEEECS---------------SS
T ss_pred EEEE---ECCCCCcHHHHHHHHHcCCc----------cccCc------ccceecceeeEEEec---------------Cc
Confidence 4678 99999999999999932111 11111 112333332233332 13
Q ss_pred eeEEEEcCCCccc-------hHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHh-----CCCceEEEEeCCCcc
Q 003378 90 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG-----ERIRPVLTVNKMDRC 155 (824)
Q Consensus 90 ~~i~liDTPGh~d-------f~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~-----~~~p~ilviNKiD~~ 155 (824)
..++++||||+.+ +.....+.+..+|.++.|+|.......+....+++... ...|.++++||+|..
T Consensus 205 ~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~ 282 (416)
T 1udx_A 205 ERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL 282 (416)
T ss_dssp CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred ceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChh
Confidence 6799999999854 22333455667999999999971111122222233322 357999999999987
No 196
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.40 E-value=3.5e-07 Score=100.15 Aligned_cols=61 Identities=21% Similarity=0.125 Sum_probs=38.3
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
.++.+.|+||||..+-. ......+|.+++|+|+..|...+... . .-...|.++|+||+|+.
T Consensus 165 ~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~--~--~il~~~~ivVlNK~Dl~ 225 (349)
T 2www_A 165 AGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIK--R--GIIEMADLVAVTKSDGD 225 (349)
T ss_dssp TTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGG
T ss_pred CCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhH--H--HHHhcCCEEEEeeecCC
Confidence 36789999999965322 23357899999999998875333211 1 11356889999999997
No 197
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.37 E-value=1.4e-06 Score=97.34 Aligned_cols=123 Identities=17% Similarity=0.194 Sum_probs=63.7
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
..++|++ +|+.|+|||||+++|+........ .|... .+. .-|+....+.+.+. ..
T Consensus 30 vsf~I~l---vG~sGaGKSTLln~L~g~~~~~~~--~~~~~-~~~-------~~t~~~~~i~~v~q------------~~ 84 (418)
T 2qag_C 30 FEFTLMV---VGESGLGKSTLINSLFLTDLYSPE--YPGPS-HRI-------KKTVQVEQSKVLIK------------EG 84 (418)
T ss_dssp CCEEEEE---ECCTTSSHHHHHHHHTTCCCCCCC--CCSCC-------------CCEEEEEECC----------------
T ss_pred CCEEEEE---ECCCCCcHHHHHHHHhCCCCCCCC--CCCcc-cCC-------ccceeeeeEEEEEe------------cC
Confidence 3467888 999999999999999432111000 11000 000 01221111111111 01
Q ss_pred CCceeEEEEcCCCccchHH------HH--------HHHH-----------Hh--cCEEEEEEeCC-CCcchhHHHHHHHH
Q 003378 87 GNEYLINLIDSPGHVDFSS------EV--------TAAL-----------RI--TDGALVVVDCI-EGVCVQTETVLRQA 138 (824)
Q Consensus 87 ~~~~~i~liDTPGh~df~~------e~--------~~~l-----------~~--~D~avlvvd~~-~gv~~~t~~~l~~~ 138 (824)
+....++++||||..++.. .+ ..++ +. +|.+|++++++ .|..+....+++.+
T Consensus 85 ~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L 164 (418)
T 2qag_C 85 GVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL 164 (418)
T ss_dssp --CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHH
T ss_pred CcccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHH
Confidence 1234789999999876532 11 1111 12 34466667776 68888777677666
Q ss_pred HhCCCceEEEEeCCCcc
Q 003378 139 LGERIRPVLTVNKMDRC 155 (824)
Q Consensus 139 ~~~~~p~ilviNKiD~~ 155 (824)
. .++|+|+|+||+|+.
T Consensus 165 ~-~~v~iIlVinK~Dll 180 (418)
T 2qag_C 165 H-EKVNIIPLIAKADTL 180 (418)
T ss_dssp T-TTSEEEEEEESTTSS
T ss_pred h-ccCcEEEEEEcccCc
Confidence 4 489999999999986
No 198
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.35 E-value=4.8e-07 Score=98.78 Aligned_cols=98 Identities=24% Similarity=0.163 Sum_probs=55.7
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechh-hhhccccccCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDA-ALKSYRGERQG 87 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~-~~~~~~~~~~~ 87 (824)
++|++ +|.+|+|||||+++|....-.+.. .. +.|+......+.+..... .+....++...
T Consensus 3 ~kI~I---VG~pnvGKSTL~n~Lt~~~~~v~~-~p---------------~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~ 63 (363)
T 1jal_A 3 FKCGI---VGLPNVGKSTLFNALTKAGIEAAN-YP---------------FCTIEPNTGVVPMPDPRLDALAEIVKPERI 63 (363)
T ss_dssp CEEEE---ECCTTSSHHHHHHHHHHTC-------C---------------CCCCCCCSSEEECCCHHHHHHHHHHCCSEE
T ss_pred CEEEE---ECCCCCCHHHHHHHHHCCCCcccC-CC---------------CceECceEEEEecCCcccceeeeeecccce
Confidence 57899 999999999999999653311110 01 112222221222210000 00000000000
Q ss_pred CceeEEEEcCCCccchHH-------HHHHHHHhcCEEEEEEeCCC
Q 003378 88 NEYLINLIDSPGHVDFSS-------EVTAALRITDGALVVVDCIE 125 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~-------e~~~~l~~~D~avlvvd~~~ 125 (824)
....++||||||+.++.. .....++.+|++++|+|+.+
T Consensus 64 ~~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 64 LPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp ECCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eeeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 135799999999988753 24567899999999999987
No 199
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.32 E-value=3.4e-06 Score=88.75 Aligned_cols=41 Identities=7% Similarity=0.058 Sum_probs=35.7
Q ss_pred cCEEEEEEeCC-CCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 114 TDGALVVVDCI-EGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 114 ~D~avlvvd~~-~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
++.+++++|.. +|..+....+++.+.+. +++|+++||+|..
T Consensus 112 al~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 112 VHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTM 153 (270)
T ss_dssp CCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGS
T ss_pred eeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccC
Confidence 47889999955 89999999888888776 8999999999987
No 200
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.25 E-value=2.1e-06 Score=92.81 Aligned_cols=68 Identities=19% Similarity=0.215 Sum_probs=52.9
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCC----------C-cchhHHHHHHHHHh----CCCceEEEEeCC
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE----------G-VCVQTETVLRQALG----ERIRPVLTVNKM 152 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~----------g-v~~~t~~~l~~~~~----~~~p~ilviNKi 152 (824)
++..+.+|||+|+..|........+.++++|+|+|.++ - -.......|..+.. .++|+|||.||+
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~ 238 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM 238 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence 36789999999999999999999999999999999872 1 11122334444432 578999999999
Q ss_pred Ccc
Q 003378 153 DRC 155 (824)
Q Consensus 153 D~~ 155 (824)
|+.
T Consensus 239 DL~ 241 (340)
T 4fid_A 239 DLF 241 (340)
T ss_dssp HHH
T ss_pred hhh
Confidence 987
No 201
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.19 E-value=6.4e-06 Score=88.15 Aligned_cols=124 Identities=16% Similarity=0.213 Sum_probs=62.4
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 86 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 86 (824)
..++|++ +|+.|+|||||+++|....- ... .| ... +..+ .. .|+......+.+. ..
T Consensus 17 ~~~~I~l---vG~nG~GKSTLl~~L~g~~~-~~~--~g-i~~-~g~~--~~--~t~~~~~~~~~~q------------~~ 72 (301)
T 2qnr_A 17 FEFTLMV---VGESGLGKSTLINSLFLTDL-YPE--RV-ISG-AAEK--IE--RTVQIEASTVEIE------------ER 72 (301)
T ss_dssp -CEEEEE---EEETTSSHHHHHHHHHC---------------------------------CEEEEC--------------
T ss_pred CCEEEEE---ECCCCCCHHHHHHHHhCCCc-cCC--CC-ccc-CCcc--cC--CcceEeeEEEEec------------CC
Confidence 4578889 99999999999999842211 100 11 000 0000 00 0111111111111 11
Q ss_pred CCceeEEEEcCCCc-------cchHHHHH-------HHHHhc-------------CEEEEEEeCCC-CcchhHHHHHHHH
Q 003378 87 GNEYLINLIDSPGH-------VDFSSEVT-------AALRIT-------------DGALVVVDCIE-GVCVQTETVLRQA 138 (824)
Q Consensus 87 ~~~~~i~liDTPGh-------~df~~e~~-------~~l~~~-------------D~avlvvd~~~-gv~~~t~~~l~~~ 138 (824)
+....++++||||+ ..|...+. ..++.+ +.+++++++.. |..+....+++.+
T Consensus 73 ~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l 152 (301)
T 2qnr_A 73 GVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI 152 (301)
T ss_dssp -CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHH
T ss_pred CcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHH
Confidence 23467899999998 33322222 333333 23666666654 5777776666655
Q ss_pred HhCCCceEEEEeCCCcc
Q 003378 139 LGERIRPVLTVNKMDRC 155 (824)
Q Consensus 139 ~~~~~p~ilviNKiD~~ 155 (824)
. .++++++|+||.|+.
T Consensus 153 ~-~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 153 H-NKVNIVPVIAKADTL 168 (301)
T ss_dssp T-TTSCEEEEECCGGGS
T ss_pred H-hcCCEEEEEEeCCCC
Confidence 3 467999999999987
No 202
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.17 E-value=6.3e-06 Score=91.68 Aligned_cols=39 Identities=5% Similarity=0.026 Sum_probs=30.0
Q ss_pred EEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 116 GALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 116 ~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
.+++++|+..|.......+++.+. .++|+|+|+||+|.+
T Consensus 151 ~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~L 189 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAI 189 (427)
T ss_dssp EEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGS
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhcc
Confidence 356788888999988888877765 788999999999987
No 203
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.09 E-value=4.7e-07 Score=99.84 Aligned_cols=115 Identities=17% Similarity=0.103 Sum_probs=68.6
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 88 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (824)
.+|++ +|.+|+|||||+++|+........ .....+ ..|.|..... +.+
T Consensus 163 ~~i~~---vG~~nvGKStliN~L~~~~~~~~~----~~~~~~------~~gtT~~~~~--~~~----------------- 210 (369)
T 3ec1_A 163 GDVYV---VGCTNVGKSTFINRIIEEATGKGN----VITTSY------FPGTTLDMIE--IPL----------------- 210 (369)
T ss_dssp SCEEE---ECCTTSSHHHHHHHHHHHHHHTTC----CCEEEE------CTTSSCEEEE--EEC-----------------
T ss_pred CcEEE---EcCCCCchHHHHHHHHhhccCCcc----ceeecC------CCCeEEeeEE--EEe-----------------
Confidence 46888 999999999999999865210000 001111 1244544332 222
Q ss_pred ceeEEEEcCCCccchH-------HHHHHHH---HhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFS-------SEVTAAL---RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~-------~e~~~~l---~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+..++++||||..+.. .+....+ +..|.+++++++...........+.++...++|+++|+||+|..
T Consensus 211 ~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~ 287 (369)
T 3ec1_A 211 ESGATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTV 287 (369)
T ss_dssp STTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCE
T ss_pred CCCeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCccc
Confidence 2248999999975321 2233334 67899999999853221111111334445678999999999986
No 204
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.05 E-value=7.9e-06 Score=89.65 Aligned_cols=96 Identities=21% Similarity=0.201 Sum_probs=56.5
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccc---ccc
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYR---GER 85 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~---~~~ 85 (824)
++|++ +|.+|+|||||+++|....-.+... .+ .|+........+... .+..+. ...
T Consensus 2 ~~v~I---VG~pnvGKSTL~n~L~~~~~~v~~~-p~---------------~Ti~pn~g~~~v~~~--~l~~~~~~~~~~ 60 (368)
T 2dby_A 2 LAVGI---VGLPNVGKSTLFNALTRANALAANY-PF---------------ATIDKNVGVVPLEDE--RLYALQRTFAKG 60 (368)
T ss_dssp CSEEE---ECCSSSSHHHHHHHHHHHHTTCSSC-CG---------------GGGSTTEEEEECCCH--HHHHHHHHHCBT
T ss_pred cEEEE---ECCCCCCHHHHHHHHhCCCCcccCC-CC---------------ceeccceeeEecChH--HHHHHHHHhccc
Confidence 46888 9999999999999997653111110 01 122222221111100 000000 000
Q ss_pred C----CCceeEEEEcCCCccch-------HHHHHHHHHhcCEEEEEEeCCC
Q 003378 86 Q----GNEYLINLIDSPGHVDF-------SSEVTAALRITDGALVVVDCIE 125 (824)
Q Consensus 86 ~----~~~~~i~liDTPGh~df-------~~e~~~~l~~~D~avlvvd~~~ 125 (824)
+ -....+.||||||..++ .......++.+|++++|+|+.+
T Consensus 61 ~~~~~~~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 61 ERVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp TBCCCEECCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ccccccCCceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 0 02467999999999875 2356677899999999999987
No 205
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.96 E-value=1.5e-06 Score=95.84 Aligned_cols=115 Identities=12% Similarity=0.107 Sum_probs=66.1
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcC-CcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG-IIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g-~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
.+|++ +|.+|+|||||+|+|+.... .+... ....+ ..|.|..... +.+
T Consensus 161 ~~i~~---vG~~nvGKStliN~L~~~~~~~~~~~----~~~~~------~~gtT~~~~~--~~~---------------- 209 (368)
T 3h2y_A 161 KDVYV---VGCTNVGKSTFINRMIKEFSDETENV----ITTSH------FPGTTLDLID--IPL---------------- 209 (368)
T ss_dssp SCEEE---EEBTTSSHHHHHHHHHHHHTTSCSSC----CEEEC------CC----CEEE--EES----------------
T ss_pred ceEEE---ecCCCCChhHHHHHHHhhhccccccc----eecCC------CCCeecceEE--EEe----------------
Confidence 46888 99999999999999987631 10110 00111 1234443322 222
Q ss_pred CceeEEEEcCCCccch-------HHHHHHH---HHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDF-------SSEVTAA---LRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df-------~~e~~~~---l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+..+.++||||..+. ..+.... ....+.+++++++...........+.++...++|+++|+||+|..
T Consensus 210 -~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~ 286 (368)
T 3h2y_A 210 -DEESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTI 286 (368)
T ss_dssp -SSSCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCE
T ss_pred -cCCeEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCcccc
Confidence 223889999997542 1222222 256788999999853321111111333445678999999999987
No 206
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.96 E-value=7.1e-06 Score=90.44 Aligned_cols=100 Identities=17% Similarity=0.155 Sum_probs=50.9
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechh-hhhcccccc
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDA-ALKSYRGER 85 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~-~~~~~~~~~ 85 (824)
...+|++ +|.+|+|||||+++|....-.+ + ...+.|+......+.+..... .+.....+.
T Consensus 21 ~~~kvgI---VG~pnvGKSTL~n~Ltg~~~~~-----~-----------~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~ 81 (396)
T 2ohf_A 21 TSLKIGI---VGLPNVGKSTFFNVLTNSQASA-----E-----------NFPFCTIDPNESRVPVPDERFDFLCQYHKPA 81 (396)
T ss_dssp SCCCEEE---ECCSSSSHHHHHHHHHC-----------------------------CCSEEEEECCCHHHHHHHHHHCCS
T ss_pred CCCEEEE---ECCCCCCHHHHHHHHHCCCccc-----c-----------CCCccccCceeEEEEECCccceeeccccCcc
Confidence 4568999 9999999999999995321100 0 011234433333333321000 000000000
Q ss_pred CCCceeEEEEcCCCccchHH-------HHHHHHHhcCEEEEEEeCCC
Q 003378 86 QGNEYLINLIDSPGHVDFSS-------EVTAALRITDGALVVVDCIE 125 (824)
Q Consensus 86 ~~~~~~i~liDTPGh~df~~-------e~~~~l~~~D~avlvvd~~~ 125 (824)
......+.||||||...+.. .....++.+|++++|||+.+
T Consensus 82 ~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 82 SKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp EEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 01134699999999988654 46678899999999999974
No 207
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.90 E-value=1.5e-05 Score=89.15 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=44.3
Q ss_pred CceeEEEEcCCCccc------hHHHHHHHHHh--cCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVD------FSSEVTAALRI--TDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~d------f~~e~~~~l~~--~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
.++.+.||||||... +..++....+. .|.+++|+|+..|-.. ..+.+.....--+..+++||+|..
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a--~~~a~~f~~~~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA--YDLASRFHQASPIGSVIITKMDGT 251 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG--HHHHHHHHHHCSSEEEEEECGGGC
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH--HHHHHHHhcccCCcEEEEeccccc
Confidence 467899999999644 56666554443 4899999999987332 223333332223567999999975
No 208
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.88 E-value=1.5e-05 Score=89.34 Aligned_cols=65 Identities=18% Similarity=0.230 Sum_probs=42.2
Q ss_pred CceeEEEEcCCCccchHHHHHHH------HHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCce-EEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAA------LRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~------l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~-ilviNKiD~~ 155 (824)
.++.+.||||||...+...+..+ +...|.+++|+|+..|.. .....+.. ..++++ -+++||+|..
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~--~~~~~~~f-~~~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD--AANTAKAF-NEALPLTGVVLTKVDGD 253 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT--HHHHHHHH-HHHSCCCCEEEECTTSS
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH--HHHHHHHH-hccCCCeEEEEecCCCC
Confidence 46789999999987654443333 336789999999987732 22222221 224564 3799999975
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.85 E-value=3.4e-06 Score=91.79 Aligned_cols=61 Identities=21% Similarity=0.191 Sum_probs=38.1
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
.++.+.||||||..+-.. .....+|.+++|+|+..|...+. +...+ ..++.++++||+|+.
T Consensus 146 ~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~--i~~~i--~~~~~ivvlNK~Dl~ 206 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQG--IKKGI--FELADMIAVNKADDG 206 (337)
T ss_dssp TTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC--------CCTTH--HHHCSEEEEECCSTT
T ss_pred CCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHH--HHHHH--hccccEEEEEchhcc
Confidence 367899999999765221 23478999999999875532110 00000 124678889999975
No 210
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.83 E-value=2.8e-05 Score=87.21 Aligned_cols=65 Identities=17% Similarity=0.245 Sum_probs=42.8
Q ss_pred CceeEEEEcCCCccchHHHHHHHH----H--hcCEEEEEEeCCCCcchhHHHHHHHHHhCCC-c-eEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAAL----R--ITDGALVVVDCIEGVCVQTETVLRQALGERI-R-PVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l----~--~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~-p-~ilviNKiD~~ 155 (824)
.++.+.||||||......+....+ + .+|.+++|+|+..|.. .....+. ....+ | ..+|+||+|..
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~--~~~~~~~-~~~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ--AGIQAKA-FKEAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG--HHHHHHH-HHTTSCSCEEEEEECSSSC
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH--HHHHHHH-HhhcccCCeEEEEeCCCCc
Confidence 467899999999876433322222 2 5799999999988742 2222222 23346 6 66999999975
No 211
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=97.79 E-value=1.7e-05 Score=86.64 Aligned_cols=67 Identities=10% Similarity=0.077 Sum_probs=53.6
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCc-----------chhHHHHHHHHHh----CCCceEEEEeCCC
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-----------CVQTETVLRQALG----ERIRPVLTVNKMD 153 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv-----------~~~t~~~l~~~~~----~~~p~ilviNKiD 153 (824)
+..+.+|||+|+..|........+.+|++|+|+|.++-. .......|..+.. .++|+|||.||+|
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D 271 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 271 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence 789999999999999999999999999999999998732 1223344444443 4789999999999
Q ss_pred cc
Q 003378 154 RC 155 (824)
Q Consensus 154 ~~ 155 (824)
+.
T Consensus 272 L~ 273 (353)
T 1cip_A 272 LF 273 (353)
T ss_dssp HH
T ss_pred ch
Confidence 85
No 212
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.79 E-value=2.3e-05 Score=87.51 Aligned_cols=65 Identities=15% Similarity=0.148 Sum_probs=41.3
Q ss_pred CceeEEEEcCCCccc----hHHHHHH--HHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCc-eEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVD----FSSEVTA--ALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~d----f~~e~~~--~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p-~ilviNKiD~~ 155 (824)
.++.+.||||||... ...++.. ....+|.+++|+|+..|-.. ....+.... .++ ..+++||+|..
T Consensus 181 ~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a--~~~a~~f~~-~~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA--YNQALAFKE-ATPIGSIIVTKLDGS 252 (443)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH--HHHHHHHHH-SCTTEEEEEECCSSC
T ss_pred CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH--HHHHHHHHh-hCCCeEEEEECCCCc
Confidence 357899999999543 3333332 23346999999999986332 222232222 344 45899999986
No 213
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.77 E-value=3.5e-05 Score=82.17 Aligned_cols=65 Identities=15% Similarity=0.182 Sum_probs=43.6
Q ss_pred CceeEEEEcCCCccc--hHHHHH------HHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCc-eEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVD--FSSEVT------AALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~d--f~~e~~------~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p-~ilviNKiD~~ 155 (824)
+++.+.||||||... ...... ..+..+|.+++|+|+..| .......+.... .++ ..+++||+|..
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGT 252 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGC
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCC
Confidence 467899999999876 432222 345578999999999865 223333333332 577 45899999975
No 214
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=97.63 E-value=5.5e-05 Score=75.97 Aligned_cols=85 Identities=16% Similarity=0.259 Sum_probs=62.2
Q ss_pred CCCCeEEEEEEeeecCCCCcceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCE
Q 003378 364 PEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNT 443 (824)
Q Consensus 364 ~~~p~va~VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdI 443 (824)
.++||.+.|..++. ..|. +..+||.+|++++||.|.+++.+ . ..+|++|+.. .+++++|.|||.
T Consensus 3 ~~~p~rl~v~~v~~--g~G~-v~~G~v~~G~i~~Gd~v~i~P~~----~-----~~~V~~I~~~----~~~~~~A~aGd~ 66 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK--DMGT-VVLGKLESGSICKGQQLVMMPNK----H-----NVEVLGILSD----DVETDTVAPGEN 66 (204)
T ss_dssp ----CBEEEEEEEE--SSSE-EEEEECCBSCEESSCCEEETTTT----E-----EEEEEEECSS----SSCBSEECTTSE
T ss_pred CCCCEEEEEEEEEc--CCCE-EEEEEEecCEEECCCEEEECCCC----C-----EEEEEEEEEC----CEEeEEECCCCE
Confidence 35788888877765 4566 89999999999999999986432 2 2688888754 367999999999
Q ss_pred EEE--eccccccccce-eeecCCC
Q 003378 444 VAM--VGLDQYITKNA-TLTNEKE 464 (824)
Q Consensus 444 vai--~gl~~~~~~tg-Tl~~~~~ 464 (824)
+++ .|++..-...| +||+..+
T Consensus 67 V~l~L~gi~~~di~rG~vl~~~~~ 90 (204)
T 3e1y_E 67 LKIRLKGIEEEEILPGFILCDPNN 90 (204)
T ss_dssp EEEEEEESSSSCCCTTCEEBCSSS
T ss_pred EEEEEcCCCHHHCccceEEECCCC
Confidence 998 77765444667 8887543
No 215
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.62 E-value=4.2e-05 Score=83.80 Aligned_cols=67 Identities=13% Similarity=0.151 Sum_probs=46.5
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCc-----------chhHHHHHHHHHh----CCCceEEEEeCCC
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-----------CVQTETVLRQALG----ERIRPVLTVNKMD 153 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv-----------~~~t~~~l~~~~~----~~~p~ilviNKiD 153 (824)
+..+.+|||+|+..|........+.++++|+|+|.++-. .......|..+.. .++|+|||+||+|
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D 279 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 279 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence 688999999999999988888899999999999998721 1122344554443 4689999999999
Q ss_pred cc
Q 003378 154 RC 155 (824)
Q Consensus 154 ~~ 155 (824)
+.
T Consensus 280 L~ 281 (362)
T 1zcb_A 280 LL 281 (362)
T ss_dssp HH
T ss_pred hh
Confidence 85
No 216
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.59 E-value=0.00012 Score=80.82 Aligned_cols=100 Identities=13% Similarity=0.097 Sum_probs=56.7
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechh-hhhccccccC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDA-ALKSYRGERQ 86 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~-~~~~~~~~~~ 86 (824)
..+|++ +|++|+|||||+++|............ +.|+......+.+..... .+.+..+...
T Consensus 20 g~~vgi---VG~pnaGKSTL~n~Ltg~~~a~~~~~p---------------~tTi~p~~G~v~v~~~r~~~l~~~~~~~~ 81 (392)
T 1ni3_A 20 NLKTGI---VGMPNVGKSTFFRAITKSVLGNPANYP---------------YATIDPEEAKVAVPDERFDWLCEAYKPKS 81 (392)
T ss_dssp CCEEEE---EECSSSSHHHHHHHHHHSTTTSTTCCS---------------SCCCCTTEEEEEECCHHHHHHHHHHCCSE
T ss_pred CCEEEE---ECCCCCCHHHHHHHHHCCCcccccCCC---------------ceeecceeeeeeeCCcchhhhhhhccccc
Confidence 457888 999999999999999653320111001 123333332332221000 0000000000
Q ss_pred CCceeEEEEcCCCccc-------hHHHHHHHHHhcCEEEEEEeCCC
Q 003378 87 GNEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 125 (824)
Q Consensus 87 ~~~~~i~liDTPGh~d-------f~~e~~~~l~~~D~avlvvd~~~ 125 (824)
.-+..+.++||||... +.......++.+|.++.|+|+.+
T Consensus 82 ~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 82 RVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 0124689999999654 34466778899999999999975
No 217
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.57 E-value=0.00014 Score=72.46 Aligned_cols=64 Identities=13% Similarity=0.197 Sum_probs=52.5
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhC-----CCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE-----RIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~-----~~p~ilviNKiD~~ 155 (824)
.|.+.|||||+... ..+..++..+|.+|+++.+...- ..+...++.+.+. ++++.+|+|++|..
T Consensus 75 ~yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TSSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 58899999999874 56778899999999999998777 7777888877655 35667999999953
No 218
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.56 E-value=0.00014 Score=73.68 Aligned_cols=59 Identities=20% Similarity=0.205 Sum_probs=36.4
Q ss_pred ceeEEEEcCCCccchHHHHHHHH-HhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAAL-RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l-~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+..+.++||+|..... ... ...+..+.|+|+..+....... ....+.|.++|+||+|+.
T Consensus 118 ~~d~~~id~~g~i~~~----~s~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~~~~iiv~NK~Dl~ 177 (226)
T 2hf9_A 118 EIDLLFIENVGNLICP----ADFDLGTHKRIVVISTTEGDDTIEKH----PGIMKTADLIVINKIDLA 177 (226)
T ss_dssp GCSEEEEECCSCSSGG----GGCCCSCSEEEEEEEGGGCTTTTTTC----HHHHTTCSEEEEECGGGH
T ss_pred CCCEEEEeCCCCccCc----chhhhccCcEEEEEecCcchhhHhhh----hhHhhcCCEEEEeccccC
Confidence 4578999999952210 011 2345677888876554322211 112468999999999986
No 219
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=97.46 E-value=0.00011 Score=79.13 Aligned_cols=67 Identities=13% Similarity=0.190 Sum_probs=51.8
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCC-------CCcc----hhHHHHHHHHHh----CCCceEEEEeCCC
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCI-------EGVC----VQTETVLRQALG----ERIRPVLTVNKMD 153 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~-------~gv~----~~t~~~l~~~~~----~~~p~ilviNKiD 153 (824)
+..+.+|||+|+..|..-.....+.++++|+|+|.+ +.-. ......|..+.. .++|++||.||+|
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~D 245 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 245 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHH
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECch
Confidence 789999999999999988889999999999999765 2111 122344444433 4789999999999
Q ss_pred cc
Q 003378 154 RC 155 (824)
Q Consensus 154 ~~ 155 (824)
+.
T Consensus 246 L~ 247 (327)
T 3ohm_A 246 LL 247 (327)
T ss_dssp HH
T ss_pred hh
Confidence 86
No 220
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.43 E-value=0.00051 Score=69.07 Aligned_cols=66 Identities=11% Similarity=-0.039 Sum_probs=52.4
Q ss_pred CceeEEEEcCCCc-cchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhC-CCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGH-VDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE-RIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh-~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~-~~p~ilviNKiD~~ 155 (824)
..|.+.+||||+. .. ..+..++..+|.+|+++.+...-...+...++.+.+. +.+..+++|++|..
T Consensus 66 ~~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 66 PKYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPY 133 (209)
T ss_dssp GGCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCT
T ss_pred hcCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCc
Confidence 3678999999997 54 3566788999999999998876666677777777663 67777999999976
No 221
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.41 E-value=0.00016 Score=83.73 Aligned_cols=107 Identities=17% Similarity=0.118 Sum_probs=59.5
Q ss_pred CceeeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccc
Q 003378 5 CFTTISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 84 (824)
Q Consensus 5 ~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 84 (824)
....+.|+| +|.+++|||||+|+|+.....+.. .|.+ ++.|... ..|.. +.
T Consensus 35 ~~~~~~Vai---vG~pnvGKStLiN~L~g~~~~~~~--~~tt-----------~~~T~gi----~~~~~---------~~ 85 (592)
T 1f5n_A 35 TQPMVVVAI---VGLYRTGKSYLMNKLAGKKKGFSL--GSTV-----------QSHTKGI----WMWCV---------PH 85 (592)
T ss_dssp CSBEEEEEE---EEBTTSSHHHHHHHHTTCSSCSCC--CCSS-----------SCCCCSE----EEEEE---------EC
T ss_pred cCCCcEEEE---ECCCCCCHHHHHHhHcCCCCcccc--CCCC-----------CCceeEE----EEeec---------cc
Confidence 345678899 999999999999999644322211 1110 1112111 12210 00
Q ss_pred cCCCceeEEEEcCCCccchHH------HHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHh
Q 003378 85 RQGNEYLINLIDSPGHVDFSS------EVTAALRITDGALVVVDCIEGVCVQTETVLRQALG 140 (824)
Q Consensus 85 ~~~~~~~i~liDTPGh~df~~------e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~ 140 (824)
....+..+.||||||..+... ....++...-..++|+|+..++..+...++..+..
T Consensus 86 ~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 86 PKKPGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVTE 147 (592)
T ss_dssp SSSTTCEEEEEEECCBCCGGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHHT
T ss_pred ccCCCceEEEecCCCcCcccccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHHHH
Confidence 012366899999999765321 11222222222367788887887777766665543
No 222
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.41 E-value=0.0001 Score=81.51 Aligned_cols=67 Identities=15% Similarity=0.169 Sum_probs=52.7
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCC----------Ccch-hHHHHHHHHHh----CCCceEEEEeCCC
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE----------GVCV-QTETVLRQALG----ERIRPVLTVNKMD 153 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~----------gv~~-~t~~~l~~~~~----~~~p~ilviNKiD 153 (824)
+..+.||||+|+..|........+.++++|+|+|.++ --.. .....|..+.. .++|+|||.||+|
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~D 295 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 295 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChh
Confidence 6889999999999999999999999999999999987 2111 22234444433 4679999999999
Q ss_pred cc
Q 003378 154 RC 155 (824)
Q Consensus 154 ~~ 155 (824)
+.
T Consensus 296 L~ 297 (402)
T 1azs_C 296 LL 297 (402)
T ss_dssp HH
T ss_pred hh
Confidence 86
No 223
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.12 E-value=0.00078 Score=74.80 Aligned_cols=117 Identities=15% Similarity=0.116 Sum_probs=67.4
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCcccccCCceeecCChhhHhHhccceeeceEEEEEeechhhhhccccccCC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 87 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (824)
...|++ +|+.|+|||||++.|+. ..... .|... .+..+..+ ++ . .+.. .
T Consensus 69 ~~~val---vG~nGaGKSTLln~L~G---l~~p~-~GsI~-~~g~~~t~-~~------~---v~q~-------------~ 117 (413)
T 1tq4_A 69 VLNVAV---TGETGSGKSSFINTLRG---IGNEE-EGAAK-TGVVEVTM-ER------H---PYKH-------------P 117 (413)
T ss_dssp CEEEEE---EECTTSSHHHHHHHHHT---CCTTS-TTSCC-CCC----C-CC------E---EEEC-------------S
T ss_pred CeEEEE---ECCCCCcHHHHHHHHhC---CCCcc-CceEE-ECCeecce-eE------E---eccc-------------c
Confidence 347888 99999999999999954 22111 23211 11111000 01 1 1210 0
Q ss_pred CceeEEEEcCCCccc---hHHHHHHH--HHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcchh
Q 003378 88 NEYLINLIDSPGHVD---FSSEVTAA--LRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFL 157 (824)
Q Consensus 88 ~~~~i~liDTPGh~d---f~~e~~~~--l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~~~ 157 (824)
....++++|+||... -..+.... +...|..++ +++.. .+.|...+.+.+...+.|+++|+||.|..++
T Consensus 118 ~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllL 190 (413)
T 1tq4_A 118 NIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDIT 190 (413)
T ss_dssp SCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHH
T ss_pred ccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCccccc
Confidence 123689999999642 12233222 233354444 66644 4667677777777889999999999998754
No 224
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.01 E-value=0.002 Score=75.50 Aligned_cols=66 Identities=20% Similarity=0.186 Sum_probs=38.7
Q ss_pred eeEEEEcCCCccch---------HHHHH---HH-HHhc-CEEEEEEeCCCCcchh-HHHHHHHHHhCCCceEEEEeCCCc
Q 003378 90 YLINLIDSPGHVDF---------SSEVT---AA-LRIT-DGALVVVDCIEGVCVQ-TETVLRQALGERIRPVLTVNKMDR 154 (824)
Q Consensus 90 ~~i~liDTPGh~df---------~~e~~---~~-l~~~-D~avlvvd~~~gv~~~-t~~~l~~~~~~~~p~ilviNKiD~ 154 (824)
-.+.|+|.||...- ...+. .. +..- ..+++++++......+ ...+++.+...+.+.|+|+||.|+
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dl 226 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDL 226 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhh
Confidence 46899999975321 11222 22 2222 4566667665444332 234555555668899999999998
Q ss_pred c
Q 003378 155 C 155 (824)
Q Consensus 155 ~ 155 (824)
.
T Consensus 227 v 227 (608)
T 3szr_A 227 V 227 (608)
T ss_dssp S
T ss_pred c
Confidence 7
No 225
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.01 E-value=0.00073 Score=72.66 Aligned_cols=63 Identities=25% Similarity=0.365 Sum_probs=39.4
Q ss_pred CceeEEEEcCCCccchHHHHHHHH----H--------hcCEEEEEEeCCCCcchhHHHHHHHHHh--CCCceE-EEEeCC
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAAL----R--------ITDGALVVVDCIEGVCVQTETVLRQALG--ERIRPV-LTVNKM 152 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l----~--------~~D~avlvvd~~~gv~~~t~~~l~~~~~--~~~p~i-lviNKi 152 (824)
.+|.+.||||||...........+ + .+|.+++|+|+..| + ..+.++.. ..+++. +++||+
T Consensus 190 ~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~-~----~~l~~~~~~~~~~~i~GvVltk~ 264 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG-Q----NGVIQAEEFSKVADVSGIILTKM 264 (320)
T ss_dssp TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT-H----HHHHHHHHHTTTSCCCEEEEECG
T ss_pred cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc-H----HHHHHHHHHhhcCCCcEEEEeCC
Confidence 468899999999765432222222 1 26899999999855 1 22233322 234544 899999
Q ss_pred Ccc
Q 003378 153 DRC 155 (824)
Q Consensus 153 D~~ 155 (824)
|..
T Consensus 265 d~~ 267 (320)
T 1zu4_A 265 DST 267 (320)
T ss_dssp GGC
T ss_pred CCC
Confidence 975
No 226
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.99 E-value=0.00045 Score=72.97 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=22.0
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHH
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
.+.++|++ +|.+|+|||||+++|+.
T Consensus 118 ~~~~~v~~---vG~~nvGKSsliN~l~~ 142 (282)
T 1puj_A 118 PRAIRALI---IGIPNVGKSTLINRLAK 142 (282)
T ss_dssp CCCEEEEE---EESTTSSHHHHHHHHHT
T ss_pred CCCceEEE---EecCCCchHHHHHHHhc
Confidence 45688999 99999999999999963
No 227
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=96.99 E-value=0.00026 Score=77.13 Aligned_cols=68 Identities=16% Similarity=0.162 Sum_probs=50.3
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCC-------C--c--chhHHHHHHHHHh----CCCceEEEEeCC
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------G--V--CVQTETVLRQALG----ERIRPVLTVNKM 152 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~-------g--v--~~~t~~~l~~~~~----~~~p~ilviNKi 152 (824)
+...+.+|||+|+..|........+.+|++|+|+|.++ . . .......|..+.. .++|+|||.||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 46789999999999999988999999999999999861 1 1 1122234444432 478999999999
Q ss_pred Ccc
Q 003378 153 DRC 155 (824)
Q Consensus 153 D~~ 155 (824)
|+.
T Consensus 261 DL~ 263 (354)
T 2xtz_A 261 DIF 263 (354)
T ss_dssp HHH
T ss_pred chh
Confidence 986
No 228
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.96 E-value=0.00047 Score=73.59 Aligned_cols=63 Identities=16% Similarity=0.073 Sum_probs=49.8
Q ss_pred eEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCc-chhH-HHHHHHHHhCCCceEEEEeCCCcc
Q 003378 91 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQT-ETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 91 ~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv-~~~t-~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
.+.+||| +..|..-...+++.+|++|+|+|+.+.. .... ...+..+...++|+++|+||+|+.
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~ 128 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLY 128 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcC
Confidence 7899999 8888777778899999999999998754 2222 233445556789999999999987
No 229
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.94 E-value=0.00065 Score=75.66 Aligned_cols=65 Identities=23% Similarity=0.356 Sum_probs=39.5
Q ss_pred CceeEEEEcCCCccch----HHHHHHH--HHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCc-eEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDF----SSEVTAA--LRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df----~~e~~~~--l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p-~ilviNKiD~~ 155 (824)
.++.+.||||||.... ..++... +..+|.+++|+|+..|. ......+.. ...++ .-+++||+|..
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq--~av~~a~~f-~~~l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ--EALSVARAF-DEKVGVTGLVLTKLDGD 250 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHH-HHHTCCCEEEEESGGGC
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH--HHHHHHHHH-HhcCCceEEEEeCcCCc
Confidence 4678999999997533 3333222 23589999999997651 112222222 12355 44899999974
No 230
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.78 E-value=0.0014 Score=73.97 Aligned_cols=64 Identities=13% Similarity=0.224 Sum_probs=36.8
Q ss_pred ceeEEEEcCCCccc----hHHHHH---HHHH-----hcCEEEEEEeCCCCcchhHHHHHHHHH-hCCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVD----FSSEVT---AALR-----ITDGALVVVDCIEGVCVQTETVLRQAL-GERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~d----f~~e~~---~~l~-----~~D~avlvvd~~~gv~~~t~~~l~~~~-~~~~p~ilviNKiD~~ 155 (824)
++.+.||||+|... ++.++. +.++ ..+-++||+|+..|-... ..++... ..+ ...+++||+|..
T Consensus 375 ~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al--~~ak~f~~~~~-itgvIlTKLD~t 451 (503)
T 2yhs_A 375 NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV--SQAKLFHEAVG-LTGITLTKLDGT 451 (503)
T ss_dssp TCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH--HHHHHHHHHTC-CSEEEEECGGGC
T ss_pred CCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHH--HHHHHHHhhcC-CCEEEEEcCCCc
Confidence 45688999999742 333322 2222 145789999988772211 1222222 223 345899999964
No 231
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.53 E-value=0.0039 Score=67.17 Aligned_cols=65 Identities=18% Similarity=0.156 Sum_probs=39.3
Q ss_pred ceeEEEEcCCCcc----chHHHHHHHH--HhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHV----DFSSEVTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~----df~~e~~~~l--~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
++.+.++||+|.. .+..+..... -..|-.++++|+..|- +....++...+.--..++++||+|..
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~it~iilTKlD~~ 281 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKIDGIILTKLDAD 281 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCCCEEEEECGGGC
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCCCEEEEeCcCCc
Confidence 3456789999974 3444443322 2468999999988762 22223333322222447899999964
No 232
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.47 E-value=0.0011 Score=69.13 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=19.7
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHH
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
++|++ +|.+|+|||||+++|..
T Consensus 100 ~~v~~---vG~~~vGKSslin~l~~ 121 (262)
T 3cnl_A 100 ARVLI---VGVPNTGKSTIINKLKG 121 (262)
T ss_dssp CEEEE---EESTTSSHHHHHHHHHT
T ss_pred hheEE---eCCCCCCHHHHHHHHhc
Confidence 57888 99999999999999963
No 233
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.43 E-value=0.0052 Score=65.47 Aligned_cols=63 Identities=17% Similarity=0.265 Sum_probs=37.1
Q ss_pred eeEEEEcCCCccc----hHHHHH---HHH-----HhcCEEEEEEeCCCCcchhHHHHHHHHH-hCCCceEEEEeCCCcc
Q 003378 90 YLINLIDSPGHVD----FSSEVT---AAL-----RITDGALVVVDCIEGVCVQTETVLRQAL-GERIRPVLTVNKMDRC 155 (824)
Q Consensus 90 ~~i~liDTPGh~d----f~~e~~---~~l-----~~~D~avlvvd~~~gv~~~t~~~l~~~~-~~~~p~ilviNKiD~~ 155 (824)
+.+.++||+|..+ +..+.. .++ ...+.+++++|+..|.... ..++... ..+ ..++++||.|..
T Consensus 185 ~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~--~~~~~~~~~~~-~t~iivTh~d~~ 260 (304)
T 1rj9_A 185 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGL--EQAKKFHEAVG-LTGVIVTKLDGT 260 (304)
T ss_dssp CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHH--HHHHHHHHHHC-CSEEEEECTTSS
T ss_pred CCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHH--HHHHHHHHHcC-CcEEEEECCccc
Confidence 4567999999643 222222 111 1256788999998774322 2223222 234 367899999975
No 234
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.38 E-value=0.0055 Score=65.01 Aligned_cols=64 Identities=11% Similarity=0.112 Sum_probs=38.1
Q ss_pred CceeEEEEcCCCccchHHH----HHHHHH--hcCEEEEEEeCCCCcchhHHHHHHHHHhCC-Cc-eEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSE----VTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGER-IR-PVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e----~~~~l~--~~D~avlvvd~~~gv~~~t~~~l~~~~~~~-~p-~ilviNKiD~~ 155 (824)
.++.+.||||||....... ....+. ..|.+++|+|+..+.. .+.+.+.... ++ .-+++||+|..
T Consensus 181 ~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~----~~~~~~~~~~~l~~~giVltk~D~~ 252 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE----DMKHIVKRFSSVPVNQYIFTKIDET 252 (296)
T ss_dssp GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH----HHHHHTTTTSSSCCCEEEEECTTTC
T ss_pred cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH----HHHHHHHHHhcCCCCEEEEeCCCcc
Confidence 3678999999997654332 222222 2578899999886632 1222222222 22 23778999975
No 235
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.37 E-value=0.0031 Score=67.23 Aligned_cols=65 Identities=14% Similarity=0.222 Sum_probs=36.5
Q ss_pred CceeEEEEcCCCccchHHH----HHH---HH-----HhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCce-EEEEeCCCc
Q 003378 88 NEYLINLIDSPGHVDFSSE----VTA---AL-----RITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDR 154 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e----~~~---~l-----~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~-ilviNKiD~ 154 (824)
.++.+.|+||||......+ ... .+ ...|.+++|+|+..|. ......+...+ ..++ -+++||+|.
T Consensus 185 ~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~a~~~~~-~~~i~gvVlTk~D~ 261 (306)
T 1vma_A 185 RNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQAKIFKE-AVNVTGIILTKLDG 261 (306)
T ss_dssp TTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHHHHHHHH-HSCCCEEEEECGGG
T ss_pred cCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHHHHHHHh-cCCCCEEEEeCCCC
Confidence 3567899999996433322 222 21 1268899999997441 11111122222 2333 478899997
Q ss_pred c
Q 003378 155 C 155 (824)
Q Consensus 155 ~ 155 (824)
.
T Consensus 262 ~ 262 (306)
T 1vma_A 262 T 262 (306)
T ss_dssp C
T ss_pred c
Confidence 5
No 236
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.34 E-value=0.0035 Score=66.06 Aligned_cols=60 Identities=22% Similarity=0.276 Sum_probs=44.1
Q ss_pred EEcCCCcc-chHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 94 LIDSPGHV-DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 94 liDTPGh~-df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+=+-|||. ....++...+..+|+++.|+|+..........+-+.+ .++|+++|+||+|+.
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~ 63 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKA 63 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGS
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccC
Confidence 34579997 5778899999999999999999988776544333322 578999999999997
No 237
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.08 E-value=0.005 Score=65.30 Aligned_cols=64 Identities=23% Similarity=0.336 Sum_probs=38.1
Q ss_pred ceeEEEEcCCCccch----HHHHHHHHH--hcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceE-EEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDF----SSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df----~~e~~~~l~--~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~i-lviNKiD~~ 155 (824)
++.+.||||||.... ..++....+ .+|.+++|+|+..+ ..+....+... ..+++. +++||+|..
T Consensus 180 ~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~-~~~~i~givlnk~d~~ 250 (295)
T 1ls1_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFD-EKVGVTGLVLTKLDGD 250 (295)
T ss_dssp TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHH-HHTCCCEEEEECGGGC
T ss_pred CCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHh-hcCCCCEEEEECCCCC
Confidence 578999999986432 233322222 47899999998754 12222222222 134533 899999975
No 238
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.01 E-value=0.0065 Score=64.61 Aligned_cols=66 Identities=17% Similarity=0.168 Sum_probs=46.9
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHh----CCCceE-EEEeCCCc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG----ERIRPV-LTVNKMDR 154 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~----~~~p~i-lviNKiD~ 154 (824)
..|.+.|||||+..... .+..++..+|.+|+|+.+...-...+..+++.+.. .+++++ +|+|+.+.
T Consensus 155 ~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 46889999999865421 23457789999999998765444455556666654 455655 89999984
No 239
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=95.91 E-value=0.021 Score=63.83 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=22.6
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHH
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
.+..-|+| +|..++|||||+|+|+..
T Consensus 65 ~~v~vVsV---~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSV---AGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEE---EESTTSSHHHHHHHHHHH
T ss_pred CceEEEEE---ECCCCCcHHHHHHHHhhh
Confidence 45667888 999999999999999875
No 240
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=95.59 E-value=0.013 Score=64.18 Aligned_cols=62 Identities=18% Similarity=-0.002 Sum_probs=40.6
Q ss_pred eEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 91 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 91 ~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
.+.-+|+| +.+|........+.+|.+++|+|+.+-.......+.+.+ .+.|+++|+||+|+.
T Consensus 50 ~~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl 111 (369)
T 3ec1_A 50 EVQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLL 111 (369)
T ss_dssp ----------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGS
T ss_pred cccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcC
Confidence 34455655 788988888888999999999999975543333332222 378999999999997
No 241
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=95.40 E-value=0.03 Score=57.97 Aligned_cols=67 Identities=21% Similarity=0.045 Sum_probs=52.2
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceE-EEEeCCCc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDR 154 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~i-lviNKiD~ 154 (824)
..|.+.|||||+..........++..+|.+|+|+.+.......+...++.+.+.+++.+ +|+|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 56889999999976533233334457999999999887766677778888888888987 99999985
No 242
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=94.94 E-value=0.0061 Score=63.48 Aligned_cols=54 Identities=22% Similarity=0.362 Sum_probs=39.0
Q ss_pred CCccch-HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 98 PGHVDF-SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 98 PGh~df-~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
|||... ..++...+..+|.++.|+|+..........+ . .. ++|+++|+||+|+.
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l-~-ll--~k~~iivlNK~DL~ 59 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGV-D-FS--RKETIILLNKVDIA 59 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTS-C-CT--TSEEEEEEECGGGS
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHH-H-hc--CCCcEEEEECccCC
Confidence 898754 3688899999999999999998766543222 1 11 89999999999997
No 243
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.78 E-value=0.037 Score=58.79 Aligned_cols=63 Identities=24% Similarity=0.318 Sum_probs=37.6
Q ss_pred eeEEEEcCCCccchH----HHH---HHHHH-----hcCEEEEEEeCCCCcchhHHHHHHHHH-hCCCceEEEEeCCCcc
Q 003378 90 YLINLIDSPGHVDFS----SEV---TAALR-----ITDGALVVVDCIEGVCVQTETVLRQAL-GERIRPVLTVNKMDRC 155 (824)
Q Consensus 90 ~~i~liDTPGh~df~----~e~---~~~l~-----~~D~avlvvd~~~gv~~~t~~~l~~~~-~~~~p~ilviNKiD~~ 155 (824)
+...++||.|...+. .+. ..++. ..+-.++|+|++.|..+... .+... ..++ .+++++|+|-.
T Consensus 184 ~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~--~~~~~~~~g~-t~iiiThlD~~ 259 (302)
T 3b9q_A 184 YDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNEVVGI-TGLILTKLDGS 259 (302)
T ss_dssp CSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH--HHHHHHHTCC-CEEEEECCSSC
T ss_pred CcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH--HHHHHHhcCC-CEEEEeCCCCC
Confidence 346789999975432 221 11211 24566999998888765543 23332 3343 47889999964
No 244
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=94.60 E-value=0.032 Score=61.04 Aligned_cols=59 Identities=14% Similarity=-0.006 Sum_probs=38.6
Q ss_pred EEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 94 LIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 94 liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
-++. ...+|........+.+|++++|+|+.+-.......+ ... ..++|+++|+||+|+.
T Consensus 51 ~v~~-~~e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l-~~~-~~~~p~ilV~NK~DL~ 109 (368)
T 3h2y_A 51 DVSL-TDDDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGL-HRF-VGNNKVLLVGNKADLI 109 (368)
T ss_dssp ------CHHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTH-HHH-SSSSCEEEEEECGGGS
T ss_pred cCCC-CHHHHHHHHHHHhccCcEEEEEEECCCCcccHHHHH-HHH-hCCCcEEEEEEChhcC
Confidence 3444 356888888888889999999999986321111111 111 2378999999999996
No 245
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.44 E-value=0.0094 Score=63.42 Aligned_cols=56 Identities=14% Similarity=0.063 Sum_probs=40.7
Q ss_pred ccchHHHHHHHHHhcCEEEEEEeCCCCc-chhH-HHHHHHHHhCCCceEEEEeCCCcc
Q 003378 100 HVDFSSEVTAALRITDGALVVVDCIEGV-CVQT-ETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 100 h~df~~e~~~~l~~~D~avlvvd~~~gv-~~~t-~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+..|..-...+++.+|++++|+|+.+.. .... ...+..+...++|+++|+||+|+.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~ 123 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLL 123 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCC
Confidence 3444433345789999999999998753 3332 344556677899999999999987
No 246
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=94.11 E-value=0.13 Score=52.84 Aligned_cols=66 Identities=21% Similarity=0.215 Sum_probs=46.8
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHh------CCCceE-EEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG------ERIRPV-LTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~------~~~p~i-lviNKiD~~ 155 (824)
..|.+.|||||+.... ....++..+|.+|+|+.+...-...+..+++.+.. .+++++ +|+|+.|..
T Consensus 110 ~~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp TTCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred cCCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 6789999999997653 35677889999999999876444444444443322 356665 899999864
No 247
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=94.09 E-value=0.052 Score=54.86 Aligned_cols=66 Identities=18% Similarity=0.203 Sum_probs=52.5
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceE-EEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~i-lviNKiD~~ 155 (824)
..|.+.|||||+... ..+..++..+|.+|+|+.+...-...+...++.+.+.+.+.+ +|+||.|..
T Consensus 110 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 110 DKFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRS 176 (237)
T ss_dssp GGCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSC
T ss_pred hcCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcc
Confidence 468899999999765 567788899999999999876555566677777777777655 899999965
No 248
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.01 E-value=0.14 Score=55.60 Aligned_cols=64 Identities=22% Similarity=0.265 Sum_probs=37.1
Q ss_pred eeEEEEcCCCccchHH----HH---HHHH-----HhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 90 YLINLIDSPGHVDFSS----EV---TAAL-----RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 90 ~~i~liDTPGh~df~~----e~---~~~l-----~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+...++||.|...+.. +. ..++ ...+-.++|+|++.|...... +.......++ .+++++|+|-.
T Consensus 241 ~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~-~~~~~~~~g~-t~iiiThlD~~ 316 (359)
T 2og2_A 241 YDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ-AREFNEVVGI-TGLILTKLDGS 316 (359)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH-HHHHHHHTCC-CEEEEESCTTC
T ss_pred CHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH-HHHHHHhcCC-eEEEEecCccc
Confidence 3467899999754322 21 1111 124567999998888665443 2122223343 47889999864
No 249
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=93.89 E-value=0.057 Score=55.61 Aligned_cols=66 Identities=17% Similarity=0.142 Sum_probs=51.9
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceE-EEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~i-lviNKiD~~ 155 (824)
..|.+.|||||+... ..+..++..+|.+|+|+.+...-...+...++.+...+.+.+ +|+|++|..
T Consensus 109 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 109 ESTDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTL 175 (263)
T ss_dssp HTCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTT
T ss_pred hhCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCcc
Confidence 357899999998765 567788899999999999876555566667777766677665 899999864
No 250
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=93.51 E-value=0.089 Score=55.33 Aligned_cols=66 Identities=21% Similarity=0.216 Sum_probs=53.6
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceE-EEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~i-lviNKiD~~ 155 (824)
.|.+.|||||+..... .+...++.+|++|+|+.+...-.......++.+.+.+.+++ +|+||+|.-
T Consensus 201 ~yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 201 NYDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRR 267 (286)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred CCCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCcccc
Confidence 5779999999976542 34556678999999999987777777788888888888877 899999975
No 251
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=93.40 E-value=0.11 Score=54.11 Aligned_cols=66 Identities=14% Similarity=0.165 Sum_probs=52.4
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceE-EEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~i-lviNKiD~~ 155 (824)
.|.+.|||||+.... ..+...++.+|++|+|+.+...-.......++.+.+.+.+++ +|+|++|..
T Consensus 191 ~yD~VIIDtpp~~~~-~d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTV-TDAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HCSEEEEECCCTTTC-SHHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCCEEEEeCCCCchH-HHHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 578999999997543 233445578999999999988777777788888888888887 899999975
No 252
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=93.28 E-value=0.11 Score=51.81 Aligned_cols=65 Identities=5% Similarity=-0.054 Sum_probs=36.2
Q ss_pred eEEEEcCC------CccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH----HHHHh----CCCceEEEEeCC-Ccc
Q 003378 91 LINLIDSP------GHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL----RQALG----ERIRPVLTVNKM-DRC 155 (824)
Q Consensus 91 ~i~liDTP------Gh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l----~~~~~----~~~p~ilviNKi-D~~ 155 (824)
++..--+| |+..+..-...+...+|++|+|||+.+.-....+.-+ ..+.. .++|.+|+.||. |++
T Consensus 97 k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp 176 (227)
T 3l82_B 97 KMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 176 (227)
T ss_dssp --------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS
T ss_pred hcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc
Confidence 34455566 6666777788999999999999999875332344333 22211 467999999995 676
No 253
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.22 E-value=0.048 Score=55.42 Aligned_cols=66 Identities=11% Similarity=0.066 Sum_probs=50.7
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCce-EEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~-ilviNKiD~~ 155 (824)
..|.+.|||||+.... .+..++..+|.+|+|+.+...-...+..+.+.+...+++. .+++||.+..
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~~ 196 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRNI 196 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECCH
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCCh
Confidence 4688999999987654 5677889999999999987554555566666677777765 4899999843
No 254
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=93.20 E-value=0.15 Score=53.66 Aligned_cols=66 Identities=11% Similarity=0.136 Sum_probs=48.8
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHh------CCCceE-EEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG------ERIRPV-LTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~------~~~p~i-lviNKiD~~ 155 (824)
..|.+.|||||+.... ....++..+|.+|+|+.+...-...+...++.+.. .+++++ +|+|+.|..
T Consensus 153 ~~yD~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~ 225 (298)
T 2oze_A 153 SDYDLIIIDTVPTPSV--YTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTD 225 (298)
T ss_dssp GGCSEEEEEECSSCSH--HHHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTT
T ss_pred cCCCEEEEECCCCccH--HHHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCC
Confidence 4688999999997664 34667778999999999876655555555555443 367755 899999965
No 255
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=92.88 E-value=0.3 Score=43.36 Aligned_cols=50 Identities=24% Similarity=0.337 Sum_probs=37.6
Q ss_pred CcceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEe
Q 003378 382 GRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 447 (824)
Q Consensus 382 g~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~ 447 (824)
++ +..+||.+|+|++|+.| |. +. ...+|.+|.. +.+++++|.|||.|++.
T Consensus 48 gp-vivGrVe~G~LK~G~~V----Pg----~~---~vg~VkSIE~----~~e~v~eA~~GdnVai~ 97 (116)
T 1xe1_A 48 KD-VIIGTVESGMIGVGFKV----KG----PS---GIGGIVRIER----NREKVEFAIAGDRIGIS 97 (116)
T ss_dssp EE-EEEEEEEEEEEETTCEE----EC----SS---CEEEEEEEEE----TTEEESEEETTCEEEEE
T ss_pred CC-eeEEEEeEEEEcCCCCc----CC----Cc---eEEEEEEEEE----CCcCcCCcCCCCEEEEE
Confidence 44 78889999999999998 22 10 0146767765 45789999999999985
No 256
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=92.82 E-value=0.18 Score=53.35 Aligned_cols=67 Identities=12% Similarity=0.148 Sum_probs=53.8
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceE-EEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~i-lviNKiD~~ 155 (824)
..+.+.|||||+..... ......+.+|++|+|+.+...........++.+.+.+++++ +|+|++|..
T Consensus 212 ~~yD~VIIDtpp~~~~~-d~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 212 DHYDLVIVDTPPMLAVS-DAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp HHCSEEEEECCCTTTCT-HHHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred hCCCEEEEcCCCCchhH-HHHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 35789999999976542 33445578999999999988877888888888888888877 899999965
No 257
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=92.72 E-value=0.14 Score=54.40 Aligned_cols=46 Identities=20% Similarity=0.333 Sum_probs=36.7
Q ss_pred HHHhcCEEEEEEeCCCCcchhH--HHHHHHHHhCCCceEEEEeCCCcc
Q 003378 110 ALRITDGALVVVDCIEGVCVQT--ETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 110 ~l~~~D~avlvvd~~~gv~~~t--~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
.+..+|.+++|+|+.++..... .+.+..++..++|++||+||+|+.
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~ 130 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLI 130 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGC
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccC
Confidence 6788999999999997654443 344455667899999999999997
No 258
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=92.68 E-value=0.043 Score=58.30 Aligned_cols=20 Identities=25% Similarity=0.404 Sum_probs=17.9
Q ss_pred EEEeecCccCCCCCHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLV 32 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll 32 (824)
.+++ +|+.|+|||||+++|+
T Consensus 175 ~~~l---vG~sG~GKSTLln~L~ 194 (307)
T 1t9h_A 175 TTVF---AGQSGVGKSSLLNAIS 194 (307)
T ss_dssp EEEE---EESHHHHHHHHHHHHC
T ss_pred EEEE---ECCCCCCHHHHHHHhc
Confidence 4677 9999999999999994
No 259
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=92.16 E-value=0.23 Score=51.22 Aligned_cols=66 Identities=12% Similarity=0.079 Sum_probs=49.5
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhC--CCceEEEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRPVLTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~--~~p~ilviNKiD~~ 155 (824)
..|.+.|||||+... ..+..++..+|.+|+|+.+...-......+++.+... ++++.+|+|+.++.
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~ 210 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKN 210 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECTT
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccCc
Confidence 468899999999765 4567788899999999998654444455666666665 45667999999654
No 260
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=92.14 E-value=0.16 Score=52.02 Aligned_cols=65 Identities=15% Similarity=0.266 Sum_probs=49.9
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCC---------CceEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGER---------IRPVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~---------~p~ilviNKiD~~ 155 (824)
.|.+.|||||+... ..+..++..+|.+|+|+++...-...+..+++.+...+ .+.-+|+|+.|..
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~ 186 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCcc
Confidence 68899999999665 47788889999999999987655556666666665544 3455999999864
No 261
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=91.90 E-value=0.087 Score=55.26 Aligned_cols=36 Identities=25% Similarity=0.130 Sum_probs=30.2
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCC
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 125 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~ 125 (824)
..|.+.|||||+.. ...+..++..+|.+|+|+.+..
T Consensus 102 ~~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~ 137 (286)
T 2xj4_A 102 AECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSF 137 (286)
T ss_dssp HHCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSH
T ss_pred hcCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCc
Confidence 35789999999986 3677889999999999998863
No 262
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=91.61 E-value=0.16 Score=51.46 Aligned_cols=65 Identities=14% Similarity=0.030 Sum_probs=50.6
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCC--c-eEEEEeCCCcc
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI--R-PVLTVNKMDRC 155 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~--p-~ilviNKiD~~ 155 (824)
.|.+.|||||+.... .+..++..+|.+|+|+.+...-...+..+++.+...+. + .-+|+|+.|..
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~ 185 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTN 185 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSC
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCC
Confidence 688999999997653 56678899999999999876555666677777776663 3 45899999964
No 263
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.43 E-value=0.2 Score=52.97 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=17.8
Q ss_pred EEEeecCccCCCCCHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLV 32 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll 32 (824)
.+++ +|+.|+|||||+++|+
T Consensus 167 i~~l---~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICIL---AGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEE---ECSTTSSHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHH
Confidence 3567 8999999999999997
No 264
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=90.90 E-value=0.15 Score=57.51 Aligned_cols=27 Identities=11% Similarity=0.121 Sum_probs=21.8
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAA 35 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~ 35 (824)
..+..|.+ +|..|+||||++.+|....
T Consensus 37 ~~~~~Ivl---vGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 37 NCPTLIVM---VGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp -CCEEEEE---ECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEE---ECCCCCCHHHHHHHHHHHH
Confidence 45567888 9999999999999996543
No 265
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=90.25 E-value=0.73 Score=45.77 Aligned_cols=68 Identities=9% Similarity=-0.045 Sum_probs=44.3
Q ss_pred CceeEEEEcCCCccc--h---HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceE-EEEeCCCcc
Q 003378 88 NEYLINLIDSPGHVD--F---SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~d--f---~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~i-lviNKiD~~ 155 (824)
+.|.+.||||||... . ......+....+.+|+|+.+..+-..++...++.+...+++++ +|+|++|..
T Consensus 107 ~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~ 180 (224)
T 1byi_A 107 QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPP 180 (224)
T ss_dssp TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSC
T ss_pred HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCc
Confidence 357899999997642 1 1112222222346888888865555556666677777788866 899999864
No 266
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=89.99 E-value=0.4 Score=50.01 Aligned_cols=58 Identities=5% Similarity=0.015 Sum_probs=40.5
Q ss_pred CCccchHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHH----HHH---H-hCCCceEEEEeC-CCcc
Q 003378 98 PGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL----RQA---L-GERIRPVLTVNK-MDRC 155 (824)
Q Consensus 98 PGh~df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l----~~~---~-~~~~p~ilviNK-iD~~ 155 (824)
-|+..+..-...+...+|++|+|||+.+--....+.-+ ..+ . ..++|.+|+.|| -|.+
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp 261 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 261 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTS
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCccccc
Confidence 36777788889999999999999999875332233222 222 1 258899999997 5887
No 267
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=89.72 E-value=0.21 Score=52.76 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=17.6
Q ss_pred EEEeecCccCCCCCHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLV 32 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll 32 (824)
.+++ +|+.|+|||||+++|.
T Consensus 171 iv~l---~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 171 ISTM---AGLSGVGKSSLLNAIN 190 (301)
T ss_dssp EEEE---ECSTTSSHHHHHHHHS
T ss_pred eEEE---ECCCCCcHHHHHHHhc
Confidence 3577 9999999999999994
No 268
>2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: TLA; 1.60A {Thermus thermophilus} SCOP: d.14.1.11 d.58.11.2
Probab=88.25 E-value=0.4 Score=46.69 Aligned_cols=99 Identities=22% Similarity=0.266 Sum_probs=78.5
Q ss_pred CCCcceeEEEEeeeeecccccccCCCChHHHHHHHHHHHHHhcCCccccc-----------cccchheccccccceeeee
Q 003378 671 EENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEP-----------ALGGIYSVLNQKRGHVFEE 739 (824)
Q Consensus 671 ~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~a~~~a~~~LlEP-----------~~g~v~~~L~~RRg~i~~~ 739 (824)
+.-+.||.|.++-+- .-...+++-++.|-..+.++|+..++..-..+ .+|+|...|.+.. .|.+.
T Consensus 80 ~~~l~nv~vVVtRyf---GGi~LG~ggLvraY~~~a~~al~~~~~~~~~~~~~~~~~~~Y~~~~~v~~~l~~~~-~i~~~ 155 (191)
T 2cve_A 80 AQGLDRVAVLVVRYF---GGVKLGAGGLVRAYGGVAAEALRRAPKVPLVERVGLAFLVPFAEVGRVYALLEARA-LKAEE 155 (191)
T ss_dssp HTTBCSEEEEEEEEC---CSSCCHHHHHHHHHHHHHHHHHHHSCEEECCCEEEEEEEECGGGHHHHHHHHHHTT-CCEEE
T ss_pred HcCCCcEEEEEEEEe---CCcccCcchHHHHHHHHHHHHHHhCCcEEEeeeeEEEEEEchhhHHHHHHHHHHcC-ceecc
Confidence 567889999888552 12334555566788888999999998766555 7888999999888 98888
Q ss_pred eccCCCCc-eEEEEEechhhhcCchHHHhhhCCCceEe
Q 003378 740 MQRPGTPL-YNIKAYLPVVESFGFSSTLRAATSGQAFP 776 (824)
Q Consensus 740 ~~~~g~~~-~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~ 776 (824)
+..+ . +.++..+|..+.-.|...|+.+|+|++.+
T Consensus 156 ~y~~---~gV~~~~~v~~~~~~~~~~~l~~~t~G~~~~ 190 (191)
T 2cve_A 156 TYTP---EGVRFALLLPKPEREGFLRALLDATRGQVAL 190 (191)
T ss_dssp EEET---TEEEEEEEEEHHHHHHHHHHHHHHTTTCCEE
T ss_pred EEcC---CeEEEEEEECHHHHHHHHHHHHHHhCCeEEe
Confidence 7753 4 78999999999999999999999999754
No 269
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=88.21 E-value=0.25 Score=47.74 Aligned_cols=23 Identities=13% Similarity=0.351 Sum_probs=19.6
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAA 35 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~ 35 (824)
.+++ +|++|+|||||++.|+...
T Consensus 7 ~i~i---~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVL---LGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEE---ECCTTSSHHHHHHHHHHHC
T ss_pred EEEE---ECCCCCCHHHHHHHHHhhC
Confidence 4677 9999999999999997643
No 270
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.17 E-value=0.87 Score=50.39 Aligned_cols=23 Identities=26% Similarity=0.156 Sum_probs=19.0
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHH
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
+.-|.+ +|.+||||||++..|..
T Consensus 258 ~~lIil---~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVA---VGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEE---ESCTTSSHHHHHHHHTG
T ss_pred CEEEEE---ECCCCCCHHHHHHHHHH
Confidence 345667 89999999999999943
No 271
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=88.04 E-value=1.7 Score=48.34 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=21.1
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHH
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
....-|+| +|..++|||+|++.|+..
T Consensus 65 ~~v~vvsv---~G~~~~gks~l~N~ll~~ 90 (457)
T 4ido_A 65 KEVVAVSV---AGAFRKGKSFLMDFMLRY 90 (457)
T ss_dssp SBEEEEEE---EEBTTSSHHHHHHHHHHH
T ss_pred CceEEEEE---ECCCCCchhHHHHHHHHH
Confidence 34566778 999999999999988643
No 272
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=88.03 E-value=0.27 Score=47.69 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=20.2
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
++++ +|+.|+|||||+..|....+
T Consensus 2 ~i~l---~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIII---TGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEE---ECCTTSSHHHHHHHHHHHHG
T ss_pred EEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 5788 99999999999999965543
No 273
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=87.52 E-value=0.26 Score=48.53 Aligned_cols=22 Identities=41% Similarity=0.457 Sum_probs=19.2
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
.+++ +|+.|+|||||++.|+..
T Consensus 6 ~i~l---vGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVL---SGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEE---ECCTTSSHHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHhh
Confidence 5678 999999999999999753
No 274
>1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function; 2.80A {Escherichia coli} SCOP: d.14.1.11 d.58.11.2
Probab=87.00 E-value=0.28 Score=48.78 Aligned_cols=101 Identities=18% Similarity=0.200 Sum_probs=80.6
Q ss_pred CCCcceeEEEEeeeeecccccccCCCChHHHHHHHHHHHHHhcCCccccc-----------cccchheccccccceeeee
Q 003378 671 EENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEP-----------ALGGIYSVLNQKRGHVFEE 739 (824)
Q Consensus 671 ~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~a~~~a~~~LlEP-----------~~g~v~~~L~~RRg~i~~~ 739 (824)
+.-+.||.|.|+-+- .-...+++-++.|-..|.++|+..++..-..+ .+|+|...|.+..+.|++.
T Consensus 92 ~~~l~nv~vVVtRyf---GGikLG~ggLvraY~~aa~~aL~~~~~v~~~~~~~~~i~~~Y~~~~~v~~~l~~~~~~i~~~ 168 (217)
T 1vi7_A 92 GSGVGEITAVVVRYY---GGILLGTGGLVKAYGGGVNQALRQLTTQRKTPLTEYTLQCEYHQLTGIEALLGQCDGKIINS 168 (217)
T ss_dssp HHTCCSEEEECCEEC---CSCCCCHHHHHHHHHHHHHHHHTTCCEEEECCCEEEEEEECTTTHHHHHHHHHHTTCEEEEE
T ss_pred HcCCCCEEEEEEEEe---CCceecccHHHHHHHHHHHHHHHhCCeEEEeeeeEEEEEEccchHHHHHHHHHHCCCEEEce
Confidence 456788888888542 22345555566788899999999988766665 7889999999999999998
Q ss_pred eccCCCCceEEEEEechhhhcCchHHHhhhCCCceEeE
Q 003378 740 MQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQ 777 (824)
Q Consensus 740 ~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~ 777 (824)
+..+ .+.++..+|..+.-.|...|+.+|+|++.+.
T Consensus 169 ~y~~---~V~~~l~v~~~~~~~~~~~l~~~t~G~~~~~ 203 (217)
T 1vi7_A 169 DYQA---FVLLRVALPAAKVAEFSAKLADFSRGSLQLL 203 (217)
T ss_dssp EESS---SEEEEEEECSSTHHHHHHHHHHHHTTCCCCE
T ss_pred EecC---CEEEEEEECHHHHHHHHHHHHHHhCCeEEEE
Confidence 8743 5888999999999999999999999998543
No 275
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=86.78 E-value=0.3 Score=47.38 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=18.5
Q ss_pred EEeecCccCCCCCHHHHHHHHHHH
Q 003378 11 VCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
+++ +|+.|+|||||+..|+..
T Consensus 4 i~l---~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVI---SGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEE---ESSSSSSHHHHHHHHHHH
T ss_pred EEE---ECCCCCCHHHHHHHHHhh
Confidence 567 999999999999999754
No 276
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=86.69 E-value=0.33 Score=47.54 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=19.6
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAA 35 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~ 35 (824)
.+++ +|+.|||||||+..|....
T Consensus 9 ii~l---~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFII---SAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEE---ECCTTSCHHHHHHHHHHHS
T ss_pred EEEE---ECcCCCCHHHHHHHHHhhC
Confidence 4677 9999999999999997653
No 277
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=86.64 E-value=0.32 Score=48.14 Aligned_cols=24 Identities=38% Similarity=0.422 Sum_probs=20.1
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHH
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
....|+| +|+.|+|||||+..|..
T Consensus 21 ~g~~v~I---~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVAL---SGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEE---ECCTTSCTHHHHHHHHH
T ss_pred CCeEEEE---ECCCCCCHHHHHHHHHH
Confidence 3457888 99999999999999943
No 278
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=86.61 E-value=0.33 Score=48.00 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=19.2
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAA 35 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~ 35 (824)
-+++ +|+.|+|||||++.|....
T Consensus 22 i~~l---~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVL---SGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHHHS
T ss_pred EEEE---ECCCCCCHHHHHHHHHhhC
Confidence 3577 9999999999999996543
No 279
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=86.12 E-value=0.43 Score=46.55 Aligned_cols=30 Identities=20% Similarity=0.133 Sum_probs=22.6
Q ss_pred CCCCceeeEEEeecCccCCCCCHHHHHHHHHHH
Q 003378 2 SSYCFTTISVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 2 ~~~~~~~i~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
-+...++..|+| .|..||||||++..|...
T Consensus 2 ~~~~~~~~~I~i---~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 2 GHEAKHPIIIGI---TGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp ----CCCEEEEE---EECTTSCHHHHHHHHHHT
T ss_pred CCcccCceEEEE---ECCCCCCHHHHHHHHHHC
Confidence 344456678999 999999999999998654
No 280
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=85.55 E-value=0.42 Score=45.33 Aligned_cols=23 Identities=35% Similarity=0.385 Sum_probs=19.5
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAA 35 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~ 35 (824)
.+++ +|+.|+|||||+..|....
T Consensus 35 ~v~L---~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYL---NGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHHHT
T ss_pred EEEE---ECCCCCCHHHHHHHHHHhC
Confidence 4678 9999999999999996543
No 281
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=85.53 E-value=0.55 Score=44.70 Aligned_cols=26 Identities=15% Similarity=0.107 Sum_probs=21.0
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGI 37 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~ 37 (824)
-.|++ +|..|+|||||+..|....|.
T Consensus 9 ~~i~l---~G~~GsGKSTl~~~l~~~~g~ 34 (175)
T 1knq_A 9 HIYVL---MGVSGSGKSAVASEVAHQLHA 34 (175)
T ss_dssp EEEEE---ECSTTSCHHHHHHHHHHHHTC
T ss_pred cEEEE---EcCCCCCHHHHHHHHHHhhCc
Confidence 35778 999999999999999655453
No 282
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=85.46 E-value=0.4 Score=47.91 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=19.5
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAA 35 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~ 35 (824)
.+++ +|+.|+|||||++.|+...
T Consensus 25 ~~~l---vGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVI---CGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEE---ECSTTSSHHHHHHHHHHHS
T ss_pred EEEE---ECCCCCCHHHHHHHHHhhC
Confidence 4678 9999999999999996543
No 283
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=85.35 E-value=0.39 Score=45.99 Aligned_cols=19 Identities=37% Similarity=0.357 Sum_probs=16.6
Q ss_pred EEEeecCccCCCCCHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSL 31 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~l 31 (824)
-+++ +|+.|||||||+..+
T Consensus 11 i~~l---~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 11 LVVL---IGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEE---ECCTTSCHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHH
Confidence 3567 999999999999986
No 284
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=84.99 E-value=0.38 Score=46.49 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=18.2
Q ss_pred EEEeecCccCCCCCHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
.|++ +|+.|+|||||+..|..
T Consensus 11 ~i~l---~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 11 ILLL---SGHPGSGKSTIAEALAN 31 (191)
T ss_dssp EEEE---EECTTSCHHHHHHHHHT
T ss_pred EEEE---ECCCCCCHHHHHHHHHh
Confidence 4677 99999999999999943
No 285
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=84.98 E-value=0.45 Score=47.79 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=19.6
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAA 35 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~ 35 (824)
.++| +|+.|+|||||++.|+...
T Consensus 18 ii~l---~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIV---SAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEE---ECCTTSCHHHHHHHHHHHS
T ss_pred EEEE---ECCCCCCHHHHHHHHhccC
Confidence 4677 8999999999999997654
No 286
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=84.87 E-value=0.52 Score=44.70 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=20.2
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
.|++ +|..|+|||||+..|....+
T Consensus 6 ~i~l---~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 6 NIFL---VGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CEEE---ECCTTSCHHHHHHHHHHHTT
T ss_pred eEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 5788 99999999999999955444
No 287
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=84.82 E-value=0.57 Score=48.49 Aligned_cols=19 Identities=42% Similarity=0.384 Sum_probs=17.3
Q ss_pred EEEeecCccCCCCCHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSL 31 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~l 31 (824)
.++| +|+.|||||||+..|
T Consensus 39 ~~~l---iG~nGsGKSTLl~~l 57 (266)
T 4g1u_C 39 MVAI---IGPNGAGKSTLLRLL 57 (266)
T ss_dssp EEEE---ECCTTSCHHHHHHHH
T ss_pred EEEE---ECCCCCcHHHHHHHH
Confidence 4677 999999999999999
No 288
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=84.66 E-value=1.6 Score=47.05 Aligned_cols=43 Identities=19% Similarity=0.219 Sum_probs=29.9
Q ss_pred HHhcCEEEEEEeCCCCcchhHH---HHHHHHHhCCCceEEEEeCCCcc
Q 003378 111 LRITDGALVVVDCIEGVCVQTE---TVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 111 l~~~D~avlvvd~~~gv~~~t~---~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+..+|.+++| |+.. ...... +.+..+...++|++||+||+|+.
T Consensus 128 ~anvD~v~iv-~a~~-P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~ 173 (358)
T 2rcn_A 128 AANIDQIVIV-SAIL-PELSLNIIDRYLVGCETLQVEPLIVLNKIDLL 173 (358)
T ss_dssp EECCCEEEEE-EEST-TTCCHHHHHHHHHHHHHHTCEEEEEEECGGGC
T ss_pred HhcCCEEEEE-EeCC-CCCCHHHHHHHHHHHHhcCCCEEEEEECccCC
Confidence 5778998876 4444 333333 33444567899999999999997
No 289
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=84.61 E-value=0.51 Score=46.26 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=21.4
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGI 37 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~ 37 (824)
-.|++ +|..|+|||||+..|....|.
T Consensus 30 ~~i~l---~G~~GsGKSTl~~~L~~~~g~ 55 (200)
T 4eun_A 30 RHVVV---MGVSGSGKTTIAHGVADETGL 55 (200)
T ss_dssp CEEEE---ECCTTSCHHHHHHHHHHHHCC
T ss_pred cEEEE---ECCCCCCHHHHHHHHHHhhCC
Confidence 35778 999999999999999665554
No 290
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=84.56 E-value=0.45 Score=47.08 Aligned_cols=24 Identities=17% Similarity=0.358 Sum_probs=20.1
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHc
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAA 35 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~ 35 (824)
.-|++ +|+.|+|||||+..|+...
T Consensus 9 ~~i~l---~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVL---SGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEE---ECCTTSCHHHHHHHHHHST
T ss_pred cEEEE---ECcCCCCHHHHHHHHHhhC
Confidence 35777 9999999999999997553
No 291
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=84.37 E-value=0.48 Score=46.73 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=20.3
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHH
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
...|+| +|+.|||||||+..|...
T Consensus 6 ~~~i~i---~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGI---AGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEE---EESTTSSHHHHHHHHHHH
T ss_pred cEEEEE---ECCCCCCHHHHHHHHHHH
Confidence 356888 999999999999999553
No 292
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=84.36 E-value=0.65 Score=47.33 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=17.4
Q ss_pred EEEeecCccCCCCCHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSL 31 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~l 31 (824)
.++| +|+.|+|||||+..|
T Consensus 30 ~~~i---~G~nGsGKSTLl~~l 48 (243)
T 1mv5_A 30 IIAF---AGPSGGGKSTIFSLL 48 (243)
T ss_dssp EEEE---ECCTTSSHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHH
Confidence 4678 999999999999999
No 293
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=84.31 E-value=0.53 Score=46.44 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=20.4
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHc
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAA 35 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~ 35 (824)
-.|++ +|+.|+|||||+++|+...
T Consensus 20 ~~ivl---~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 20 KTLVL---IGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CEEEE---ECCTTSSHHHHHHHHHHHC
T ss_pred CEEEE---ECcCCCCHHHHHHHHHhhC
Confidence 35677 9999999999999998654
No 294
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=84.13 E-value=0.58 Score=44.14 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=20.0
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
.|++ .|.+|+||||++..|....|
T Consensus 3 ~i~l---~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIIL---EGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEE---ECSSSSSHHHHHHHHHHHHC
T ss_pred EEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 4677 99999999999999965544
No 295
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=83.99 E-value=0.57 Score=44.11 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=19.3
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
.|++ .|.+||||||++..| ...|
T Consensus 3 ~I~l---~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 3 VILI---TGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp EEEE---ECCTTSCHHHHHHHH-HHTT
T ss_pred EEEE---ECCCCCCHHHHHHHH-HHCC
Confidence 4677 999999999999999 5444
No 296
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=83.83 E-value=0.58 Score=45.11 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=18.7
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
.+++ +|..|+|||||+++|+..
T Consensus 8 ~i~i---~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAF---AAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEE---ECCTTSCHHHHHHHHHHH
T ss_pred EEEE---EeCCCCCHHHHHHHHHHh
Confidence 4567 999999999999999653
No 297
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=83.80 E-value=0.47 Score=48.11 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=17.3
Q ss_pred EEEeecCccCCCCCHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSL 31 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~l 31 (824)
.++| +|+.|||||||+..|
T Consensus 33 ~~~i---iG~nGsGKSTLl~~l 51 (235)
T 3tif_A 33 FVSI---MGPSGSGKSTMLNII 51 (235)
T ss_dssp EEEE---ECSTTSSHHHHHHHH
T ss_pred EEEE---ECCCCCcHHHHHHHH
Confidence 4677 999999999999999
No 298
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=83.52 E-value=1.4 Score=46.77 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=18.2
Q ss_pred EEeecCccCCCCCHHHHHHHHHHH
Q 003378 11 VCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
+.+ .|++|+|||||+-++...
T Consensus 126 iLI---~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 126 VIV---TGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEE---ECSCSSSHHHHHHHHHHH
T ss_pred EEE---EcCCCCCHHHHHHHHHHh
Confidence 456 899999999999999765
No 299
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=83.51 E-value=4.2 Score=42.33 Aligned_cols=22 Identities=32% Similarity=0.375 Sum_probs=19.1
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
.+.+ .|++|+|||||+.++...
T Consensus 49 ~~ll---~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 49 SFLF---LGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEE---ESCSSSSHHHHHHHHHHH
T ss_pred EEEE---ECCCCcCHHHHHHHHHHH
Confidence 6777 999999999999999554
No 300
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=83.50 E-value=0.51 Score=46.14 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=18.9
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
.|++ +|+.|||||||+..|...
T Consensus 8 ~i~l---~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 8 LIVL---SGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp EEEE---ECSTTSCHHHHHHHHHHC
T ss_pred EEEE---ECCCCCCHHHHHHHHHHh
Confidence 5777 999999999999998543
No 301
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=83.12 E-value=0.5 Score=47.52 Aligned_cols=19 Identities=37% Similarity=0.321 Sum_probs=17.1
Q ss_pred EEEeecCccCCCCCHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSL 31 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~l 31 (824)
.++| +|+.|+|||||+..|
T Consensus 32 ~~~i---iG~nGsGKSTLl~~l 50 (224)
T 2pcj_A 32 FVSI---IGASGSGKSTLLYIL 50 (224)
T ss_dssp EEEE---EECTTSCHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHH
Confidence 3577 999999999999998
No 302
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=82.97 E-value=0.66 Score=44.52 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=18.3
Q ss_pred EEEeecCccCCCCCHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
.+++ +|..|+|||||+.+|+.
T Consensus 6 ~i~i---~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 6 VWQV---VGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp EEEE---ECCTTSSHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHH
Confidence 4667 99999999999999964
No 303
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=82.97 E-value=3.4 Score=44.37 Aligned_cols=42 Identities=17% Similarity=0.015 Sum_probs=36.5
Q ss_pred cCEEEEEEeCCCCcchhHHHHHHHHHhCCCceE-EEEeCCCcc
Q 003378 114 TDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (824)
Q Consensus 114 ~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~i-lviNKiD~~ 155 (824)
.+++++|.-+..-....+++.+..+.+.++|+. +|+|++...
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~ 279 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPE 279 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccc
Confidence 478999998888777888899999999999987 899998865
No 304
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=82.83 E-value=0.62 Score=45.48 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=19.8
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAA 35 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~ 35 (824)
.|+| +|++|+|||||+++|+...
T Consensus 3 pIVi---~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVI---SGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEE---ECCTTSSHHHHHHHHHHHC
T ss_pred EEEE---ECCCCCCHHHHHHHHHHhC
Confidence 4677 9999999999999998653
No 305
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=82.81 E-value=0.7 Score=46.91 Aligned_cols=28 Identities=14% Similarity=0.265 Sum_probs=22.7
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCCc
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGII 38 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~i 38 (824)
+-.|++ +|..|||||||+..|...-|..
T Consensus 27 ~~~i~l---~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 27 LLRAVI---LGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCEEEE---ECCTTSSHHHHHHHHHHHHCCC
T ss_pred CcEEEE---ECCCCCCHHHHHHHHHHHhCCe
Confidence 346888 9999999999999997555644
No 306
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=82.50 E-value=0.6 Score=47.55 Aligned_cols=20 Identities=30% Similarity=0.295 Sum_probs=17.6
Q ss_pred EEEeecCccCCCCCHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLV 32 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll 32 (824)
.+++ +|+.|+|||||+..|.
T Consensus 26 ~~~l---iG~nGsGKSTLl~~l~ 45 (240)
T 2onk_A 26 YCVL---LGPTGAGKSVFLELIA 45 (240)
T ss_dssp EEEE---ECCTTSSHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHh
Confidence 3577 9999999999999983
No 307
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=82.47 E-value=0.74 Score=45.06 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.0
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
..|++ .|..|+|||||+..|....|
T Consensus 19 ~~I~l---~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 19 GSIVV---MGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SCEEE---ECSTTSCHHHHHHHHHHHHT
T ss_pred eEEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 35788 99999999999999966544
No 308
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=82.46 E-value=0.59 Score=45.17 Aligned_cols=21 Identities=29% Similarity=0.238 Sum_probs=18.1
Q ss_pred EEEeecCccCCCCCHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
.+++ +|+.|+|||||+..|..
T Consensus 4 ii~l---~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYII---TGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHH
T ss_pred EEEE---ECCCCCcHHHHHHHHhc
Confidence 3567 89999999999999954
No 309
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=82.44 E-value=1.6 Score=47.83 Aligned_cols=65 Identities=20% Similarity=0.190 Sum_probs=41.6
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCCCcc-------hhHHHHHHHHHhCCCc-----eEEEEeCCCc
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------VQTETVLRQALGERIR-----PVLTVNKMDR 154 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~gv~-------~~t~~~l~~~~~~~~p-----~ilviNKiD~ 154 (824)
..|.+.|||||+... ..+..++..+|.+|+|+.+..-.. .....+++.+.+.+.+ ++.++|+.|.
T Consensus 246 ~~yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~ 322 (403)
T 3ez9_A 246 DDYDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTG 322 (403)
T ss_dssp GGCSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC---
T ss_pred hcCCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCC
Confidence 468899999999776 457788899999999998743211 1222344445544433 2458999884
No 310
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=82.22 E-value=0.69 Score=47.01 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=21.8
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcCC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAGI 37 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~ 37 (824)
...|+| +|+.|||||||+..|....|.
T Consensus 25 g~iigI---~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 25 PFLIGV---SGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp SEEEEE---ECSTTSSHHHHHHHHHHHHTG
T ss_pred CEEEEE---ECCCCCCHHHHHHHHHHHhch
Confidence 345788 999999999999999665453
No 311
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=82.13 E-value=1.3 Score=47.95 Aligned_cols=35 Identities=11% Similarity=-0.028 Sum_probs=29.2
Q ss_pred ceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCC
Q 003378 89 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 125 (824)
Q Consensus 89 ~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~ 125 (824)
.|.+.|||||+... .....++..+|.+|+|+.+..
T Consensus 153 ~yD~VIID~pP~l~--~~~~~aL~~aD~viip~~~~~ 187 (361)
T 3pg5_A 153 RYDVIFFDVGPSLG--PFNRTVLLGCDAFVTPTATDL 187 (361)
T ss_dssp CCSEEEEECCSCCS--HHHHHHHTTCSEEEEEECCSH
T ss_pred CCCEEEEECCCCcC--HHHHHHHHHCCEEEEEecCCh
Confidence 68899999998654 556778888999999999864
No 312
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=81.99 E-value=0.72 Score=43.82 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=18.9
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHH
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
..|.+ .|.+|+||||++..|..
T Consensus 3 ~~I~i---~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILT---IGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEE---ECCTTSSHHHHHHHHHH
T ss_pred eEEEE---ecCCCCCHHHHHHHHHh
Confidence 35677 99999999999999965
No 313
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=81.96 E-value=0.7 Score=49.23 Aligned_cols=27 Identities=30% Similarity=0.208 Sum_probs=22.0
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHc
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAA 35 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~ 35 (824)
.+++-|+| +|+.|||||||+..|....
T Consensus 90 ~~p~iigI---~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 90 KVPYIIGI---AGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCCEEEEE---ECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEE---ECCCCCCHHHHHHHHHHHh
Confidence 35567888 9999999999999995443
No 314
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=81.94 E-value=0.67 Score=49.18 Aligned_cols=24 Identities=33% Similarity=0.313 Sum_probs=20.1
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHH
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
...-|+| +|+.|||||||+..|..
T Consensus 89 ~g~ivgI---~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGV---AGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEE---ECCTTSCHHHHHHHHHH
T ss_pred CCEEEEE---ECCCCchHHHHHHHHHh
Confidence 4456788 99999999999999943
No 315
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=81.91 E-value=0.74 Score=45.22 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=20.2
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHc
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAA 35 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~ 35 (824)
..|++ +|.+|+|||||++.|....
T Consensus 13 ~~i~l---~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVV---CGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEE---ECCTTSCHHHHHHHHHHHC
T ss_pred CEEEE---ECCCCCCHHHHHHHHHHhC
Confidence 35677 8999999999999997654
No 316
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=81.89 E-value=0.77 Score=45.09 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=20.9
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHH
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
+...|++ .|..|+||||++..|...
T Consensus 9 ~~~~I~l---~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVF---EGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEE---EESTTSSHHHHHHHHHHH
T ss_pred cCCEEEE---EcCCCCCHHHHHHHHHHH
Confidence 4567888 999999999999999543
No 317
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=81.70 E-value=0.64 Score=47.20 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=17.3
Q ss_pred EEEeecCccCCCCCHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSL 31 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~l 31 (824)
.++| +|+.|+|||||+..|
T Consensus 33 ~~~i---~G~nGsGKSTLl~~l 51 (237)
T 2cbz_A 33 LVAV---VGQVGCGKSSLLSAL 51 (237)
T ss_dssp EEEE---ECSTTSSHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHH
Confidence 4677 999999999999999
No 318
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=81.67 E-value=0.59 Score=46.47 Aligned_cols=22 Identities=18% Similarity=0.040 Sum_probs=18.7
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
.+++ +|+.|+|||||+..|...
T Consensus 24 ~~~l---iG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFG---LGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEE---ECCTTSSTTHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHhcC
Confidence 3677 999999999999999643
No 319
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=81.64 E-value=0.64 Score=46.91 Aligned_cols=19 Identities=37% Similarity=0.363 Sum_probs=17.3
Q ss_pred EEEeecCccCCCCCHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSL 31 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~l 31 (824)
.++| +|+.|+|||||+..|
T Consensus 36 ~~~i---~G~nGsGKSTLl~~l 54 (229)
T 2pze_A 36 LLAV---AGSTGAGKTSLLMMI 54 (229)
T ss_dssp EEEE---ECCTTSSHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHH
Confidence 4677 999999999999999
No 320
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=81.58 E-value=0.64 Score=48.01 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=17.2
Q ss_pred EEEeecCccCCCCCHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSL 31 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~l 31 (824)
.++| +|+.|+|||||+..|
T Consensus 34 ~~~l---iG~nGsGKSTLlk~l 52 (262)
T 1b0u_A 34 VISI---IGSSGSGKSTFLRCI 52 (262)
T ss_dssp EEEE---ECCTTSSHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHH
Confidence 3577 999999999999999
No 321
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=81.58 E-value=0.64 Score=47.80 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=17.3
Q ss_pred EEEeecCccCCCCCHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSL 31 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~l 31 (824)
.++| +|+.|+|||||+..|
T Consensus 35 ~~~l---iG~nGsGKSTLlk~l 53 (257)
T 1g6h_A 35 VTLI---IGPNGSGKSTLINVI 53 (257)
T ss_dssp EEEE---ECSTTSSHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHH
Confidence 4677 999999999999999
No 322
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=81.56 E-value=0.38 Score=46.32 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=18.4
Q ss_pred EEEeecCccCCCCCHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
.|+| +|..|+|||||+..|+.
T Consensus 4 ~v~I---vG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSI---VGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEE---EESCHHHHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHH
Confidence 4678 99999999999999953
No 323
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=81.38 E-value=3.3 Score=41.59 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=48.3
Q ss_pred CceeEEEEcCCCcc-----chHHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceE-EEEeCCCcc
Q 003378 88 NEYLINLIDSPGHV-----DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (824)
Q Consensus 88 ~~~~i~liDTPGh~-----df~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~i-lviNKiD~~ 155 (824)
..+.+.+||+||.. +.......+......+|+|+++..|-..++...++.+...++++. +++|+++..
T Consensus 109 ~~~D~vlIEgaggl~~p~~~~~~~adla~~l~~pviLV~~~~~~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~ 182 (228)
T 3of5_A 109 QDLDILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCNDSN 182 (228)
T ss_dssp SSCSEEEEEEEEETTCBSSSSCBHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEEECCTT
T ss_pred ccCCEEEEECCCccccccccchhHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHhCCCcEEEEEEECcCCc
Confidence 46789999999742 111122223333456899999988877777777787888899877 899999754
No 324
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=81.32 E-value=0.66 Score=48.30 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=17.2
Q ss_pred EEEeecCccCCCCCHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSL 31 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~l 31 (824)
.++| +|+.|||||||+..|
T Consensus 36 ~~~i---iGpnGsGKSTLl~~l 54 (275)
T 3gfo_A 36 VTAI---LGGNGVGKSTLFQNF 54 (275)
T ss_dssp EEEE---ECCTTSSHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHH
Confidence 3677 999999999999999
No 325
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=81.28 E-value=0.68 Score=46.26 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=17.1
Q ss_pred EEEeecCccCCCCCHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSL 31 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~l 31 (824)
.++| +|+.|+|||||+..|
T Consensus 37 ~~~i---iG~NGsGKSTLlk~l 55 (214)
T 1sgw_A 37 VVNF---HGPNGIGKTTLLKTI 55 (214)
T ss_dssp CEEE---ECCTTSSHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHH
Confidence 3577 999999999999999
No 326
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=81.27 E-value=0.82 Score=44.66 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=18.6
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
.+++ +|+.|+|||||+..|...
T Consensus 3 ~i~i---~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFL---TGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEE---ESCCSSCHHHHHHHHHHH
T ss_pred EEEE---ECCCCChHHHHHHHHHhh
Confidence 3677 999999999999998643
No 327
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=81.15 E-value=0.81 Score=44.87 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=18.5
Q ss_pred eEEEeecCccCCCCCHHHHHHHHH
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLV 32 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll 32 (824)
..|++ +|..||||||++..|.
T Consensus 3 ~~i~l---~G~~GsGKST~~~~La 23 (206)
T 1jjv_A 3 YIVGL---TGGIGSGKTTIANLFT 23 (206)
T ss_dssp EEEEE---ECSTTSCHHHHHHHHH
T ss_pred cEEEE---ECCCCCCHHHHHHHHH
Confidence 45788 9999999999999984
No 328
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=81.14 E-value=0.72 Score=47.22 Aligned_cols=20 Identities=40% Similarity=0.326 Sum_probs=17.7
Q ss_pred EEEeecCccCCCCCHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLV 32 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll 32 (824)
.++| +|+.|+|||||+..|.
T Consensus 31 ~~~l---~G~nGsGKSTLlk~l~ 50 (250)
T 2d2e_A 31 VHAL---MGPNGAGKSTLGKILA 50 (250)
T ss_dssp EEEE---ECSTTSSHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHh
Confidence 3677 9999999999999994
No 329
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=81.14 E-value=0.85 Score=45.35 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.2
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
..|+| +|.+|+||||++..|...-|
T Consensus 6 ~~i~i---~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITI---DGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEE---ECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 46888 99999999999999965544
No 330
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=81.10 E-value=0.86 Score=46.98 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=18.5
Q ss_pred EEEeecCccCCCCCHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
.+++ +|+.|+|||||+..|+.
T Consensus 27 ~v~i---~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILV---TGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEE---ECSTTCSHHHHHHHHHH
T ss_pred EEEE---ECCCCccHHHHHHHHHH
Confidence 4677 99999999999999964
No 331
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=81.10 E-value=0.69 Score=47.04 Aligned_cols=19 Identities=32% Similarity=0.337 Sum_probs=17.2
Q ss_pred EEEeecCccCCCCCHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSL 31 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~l 31 (824)
.+++ +|+.|+|||||+..|
T Consensus 34 ~~~l---~G~nGsGKSTLl~~l 52 (240)
T 1ji0_A 34 IVTL---IGANGAGKTTTLSAI 52 (240)
T ss_dssp EEEE---ECSTTSSHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHH
Confidence 4677 999999999999999
No 332
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=81.07 E-value=0.89 Score=44.16 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=20.2
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
.|++ .|..|+||||++..|...-+
T Consensus 2 ~I~i---~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAI---FGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEE---ECCTTSCHHHHHHHHHHHHC
T ss_pred EEEE---ECCCccCHHHHHHHHHHhcC
Confidence 4778 99999999999999966544
No 333
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=81.01 E-value=0.7 Score=47.26 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=17.4
Q ss_pred EEEeecCccCCCCCHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSL 31 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~l 31 (824)
.++| +|+.|+|||||+..|
T Consensus 37 ~~~i---~G~nGsGKSTLl~~l 55 (247)
T 2ff7_A 37 VIGI---VGRSGSGKSTLTKLI 55 (247)
T ss_dssp EEEE---ECSTTSSHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHH
Confidence 4677 999999999999999
No 334
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=80.96 E-value=0.94 Score=43.37 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=18.9
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHH
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
-.+++ .|+.|+|||||+.++..
T Consensus 39 ~~~~l---~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 39 KGLTF---VGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CEEEE---CCSSSSSHHHHHHHHHH
T ss_pred CEEEE---ECCCCCCHHHHHHHHHH
Confidence 45777 99999999999999954
No 335
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=80.84 E-value=0.95 Score=44.25 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=20.5
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
.|++ +|..|+||||++..|....|
T Consensus 27 ~i~l---~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 27 RIFL---TGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp EEEE---ECCTTSCHHHHHHHHHHHHT
T ss_pred EEEE---EcCCCCCHHHHHHHHHHHcC
Confidence 6778 99999999999999965544
No 336
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=80.82 E-value=0.98 Score=43.46 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=21.4
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
+..|++ .|.+||||||++..|....|
T Consensus 3 ~~~I~l---~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFV---LGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEE---ECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 356788 99999999999999965544
No 337
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=80.69 E-value=0.78 Score=49.58 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=18.3
Q ss_pred EEEeecCccCCCCCHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
.+++ +|+.|+|||||+++|+.
T Consensus 217 ~~~l---vG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 217 ISIF---AGQSGVGKSSLLNALLG 237 (358)
T ss_dssp EEEE---ECCTTSSHHHHHHHHHC
T ss_pred EEEE---ECCCCccHHHHHHHHhc
Confidence 4677 99999999999999953
No 338
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=80.64 E-value=0.75 Score=45.00 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=18.8
Q ss_pred EEEeecCccCCCCCHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
.|+| +|..|+||||++..|..
T Consensus 3 ~i~i---~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGL---TGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEE---EECTTSSHHHHHHHHHH
T ss_pred EEEE---ECCCCcCHHHHHHHHHH
Confidence 5788 99999999999999955
No 339
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=80.62 E-value=0.76 Score=46.30 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=17.6
Q ss_pred EEEeecCccCCCCCHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLV 32 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll 32 (824)
-+++ +|+.|+|||||+..|+
T Consensus 32 ~~~l---~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLL---TGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEE---ECCTTSSHHHHHHHHH
T ss_pred EEEE---EeCCCCCHHHHHHHHH
Confidence 4577 8999999999999985
No 340
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=80.61 E-value=0.73 Score=47.51 Aligned_cols=19 Identities=37% Similarity=0.440 Sum_probs=17.4
Q ss_pred EEEeecCccCCCCCHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSL 31 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~l 31 (824)
.++| +|+.|+|||||+..|
T Consensus 48 ~~~i---~G~nGsGKSTLl~~l 66 (260)
T 2ghi_A 48 TCAL---VGHTGSGKSTIAKLL 66 (260)
T ss_dssp EEEE---ECSTTSSHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHH
Confidence 4678 999999999999999
No 341
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=80.48 E-value=0.85 Score=48.17 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=19.0
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
.++| +|+.|+|||||+..|+..
T Consensus 128 ~vaI---vGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAF---IGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEE---ECSSSSSHHHHHHHHHHH
T ss_pred EEEE---ECCCCCcHHHHHHHHhhh
Confidence 4678 999999999999999643
No 342
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=80.47 E-value=0.95 Score=44.66 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=20.8
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCC
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGI 37 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~ 37 (824)
+|++ .|.+||||||++..|....|.
T Consensus 2 ~I~l---~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3fb4_A 2 NIVL---MGLPGAGKGTQAEQIIEKYEI 26 (216)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEE---ECCCCCCHHHHHHHHHHHhCC
Confidence 5778 999999999999999665553
No 343
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=80.43 E-value=0.84 Score=47.87 Aligned_cols=25 Identities=12% Similarity=0.085 Sum_probs=21.0
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHH
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
.++..|+| +|.+|+|||||+..|..
T Consensus 29 ~~~~ii~I---~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFF---SGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEE---ECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEE---ECCCCCCHHHHHHHHHH
Confidence 35567888 99999999999998843
No 344
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=80.36 E-value=1 Score=44.44 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=20.9
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCC
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGI 37 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~ 37 (824)
+|++ .|.+|+||||++..|....|.
T Consensus 2 ~I~l---~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3dl0_A 2 NLVL---MGLPGAGKGTQGERIVEKYGI 26 (216)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEE---ECCCCCCHHHHHHHHHHHhCC
Confidence 5778 999999999999999665553
No 345
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=80.29 E-value=0.75 Score=47.51 Aligned_cols=19 Identities=32% Similarity=0.363 Sum_probs=17.2
Q ss_pred EEEeecCccCCCCCHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSL 31 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~l 31 (824)
.++| +|+.|+|||||+..|
T Consensus 52 i~~l---iG~NGsGKSTLlk~l 70 (263)
T 2olj_A 52 VVVV---IGPSGSGKSTFLRCL 70 (263)
T ss_dssp EEEE---ECCTTSSHHHHHHHH
T ss_pred EEEE---EcCCCCcHHHHHHHH
Confidence 3577 999999999999998
No 346
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=79.97 E-value=0.79 Score=46.95 Aligned_cols=19 Identities=37% Similarity=0.366 Sum_probs=17.2
Q ss_pred EEEeecCccCCCCCHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSL 31 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~l 31 (824)
.+++ +|+.|+|||||+..|
T Consensus 28 ~~~l---iG~NGsGKSTLlk~l 46 (249)
T 2qi9_C 28 ILHL---VGPNGAGKSTLLARM 46 (249)
T ss_dssp EEEE---ECCTTSSHHHHHHHH
T ss_pred EEEE---ECCCCCcHHHHHHHH
Confidence 3577 999999999999998
No 347
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=79.97 E-value=0.78 Score=47.17 Aligned_cols=19 Identities=26% Similarity=0.176 Sum_probs=17.2
Q ss_pred EEEeecCccCCCCCHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSL 31 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~l 31 (824)
.++| +|+.|+|||||+..|
T Consensus 43 i~~l---~G~NGsGKSTLlk~l 61 (256)
T 1vpl_A 43 IFGL---IGPNGAGKTTTLRII 61 (256)
T ss_dssp EEEE---ECCTTSSHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHH
Confidence 4677 999999999999999
No 348
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=79.81 E-value=1.1 Score=42.98 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=20.8
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
..|++ +|..|+||||++..|....|
T Consensus 6 ~~i~l---~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 6 TNIYL---IGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CEEEE---ECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 35778 99999999999999965544
No 349
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=79.78 E-value=1 Score=42.80 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=20.0
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
.|.+ .|.+|+||||++..|....+
T Consensus 5 ~i~l---~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 5 MIIL---NGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp EEEE---ECCTTSSHHHHHHHHHHHSS
T ss_pred EEEE---ECCCCCCHHHHHHHHHHhcC
Confidence 4677 89999999999999966543
No 350
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=79.77 E-value=0.97 Score=43.24 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=17.6
Q ss_pred ccCCCCCHHHHHHHHHHHcC
Q 003378 17 ANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 17 ~G~~~~GKTTL~~~ll~~~g 36 (824)
+|+.|+|||||+++|.+..+
T Consensus 32 ~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 32 VGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EECTTSSHHHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHHHHHc
Confidence 89999999999999976544
No 351
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=79.73 E-value=0.84 Score=47.22 Aligned_cols=20 Identities=30% Similarity=0.370 Sum_probs=17.6
Q ss_pred EEEeecCccCCCCCHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLV 32 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll 32 (824)
.++| +|+.|+|||||+..|.
T Consensus 48 ~~~l---~G~NGsGKSTLlk~l~ 67 (267)
T 2zu0_C 48 VHAI---MGPNGSGKSTLSATLA 67 (267)
T ss_dssp EEEE---ECCTTSSHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHh
Confidence 4677 9999999999999993
No 352
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=79.69 E-value=0.59 Score=46.91 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=14.0
Q ss_pred EEEeecCccCCCCCHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLV 32 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll 32 (824)
.+++ +|+.|+|||||+..|.
T Consensus 29 ii~l---~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 29 ILVL---SSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEEE---ECSCC----CHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHH
Confidence 4677 9999999999999996
No 353
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=79.65 E-value=1.2 Score=42.64 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=20.9
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
..|++ .|..||||||++..|....|
T Consensus 5 ~~I~l---~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 5 QAVIF---LGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEE---ECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 46788 99999999999999965444
No 354
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=79.64 E-value=0.87 Score=45.19 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=18.2
Q ss_pred EEEeecCccCCCCCHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
-++| +|+.|+|||||+..|+.
T Consensus 27 ~~~l---~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEV---FGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEE---EESTTSSHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHH
Confidence 3577 99999999999999954
No 355
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=79.57 E-value=1.1 Score=43.11 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=21.1
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
...|.+ .|.+|+||||++..|....|
T Consensus 5 ~~~I~l---~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIV---TGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEE---EESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEE---ECCCCCCHHHHHHHHHHHcC
Confidence 356778 99999999999999965444
No 356
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=79.54 E-value=0.82 Score=47.42 Aligned_cols=19 Identities=32% Similarity=0.340 Sum_probs=17.3
Q ss_pred EEEeecCccCCCCCHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSL 31 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~l 31 (824)
.++| +|+.|+|||||+..|
T Consensus 47 ~~~i---~G~nGsGKSTLlk~l 65 (271)
T 2ixe_A 47 VTAL---VGPNGSGKSTVAALL 65 (271)
T ss_dssp EEEE---ECSTTSSHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHH
Confidence 4677 999999999999999
No 357
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=79.51 E-value=0.83 Score=47.24 Aligned_cols=19 Identities=37% Similarity=0.394 Sum_probs=17.2
Q ss_pred EEEeecCccCCCCCHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSL 31 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~l 31 (824)
.++| +|+.|+|||||+..|
T Consensus 35 ~~~l---iG~nGsGKSTLl~~i 53 (266)
T 2yz2_A 35 CLLV---AGNTGSGKSTLLQIV 53 (266)
T ss_dssp EEEE---ECSTTSSHHHHHHHH
T ss_pred EEEE---ECCCCCcHHHHHHHH
Confidence 4677 999999999999998
No 358
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=79.37 E-value=2.3 Score=44.14 Aligned_cols=67 Identities=10% Similarity=0.070 Sum_probs=40.8
Q ss_pred CceeEEEEcCCCccchHH-HHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHh----CCCceE-EEEeCCCc
Q 003378 88 NEYLINLIDSPGHVDFSS-EVTAALRITDGALVVVDCIEGVCVQTETVLRQALG----ERIRPV-LTVNKMDR 154 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~-e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~----~~~p~i-lviNKiD~ 154 (824)
..|.+.||||||...... ........+|.+|+|+.+...-...+..+++.+.. .+++.+ +|+|+.+.
T Consensus 117 ~~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 189 (289)
T 2afh_E 117 DDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNT 189 (289)
T ss_dssp TTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC
T ss_pred cCCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 468899999999642111 01122357999999998765433333344443332 366654 88999864
No 359
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=79.23 E-value=0.88 Score=44.52 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=19.4
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHH
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
-.|++ +|..|+|||||+..|...
T Consensus 26 ~~i~l---~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWV---TGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEE---ECSTTSSHHHHHHHHHHH
T ss_pred eEEEE---ECCCCCCHHHHHHHHHHH
Confidence 46778 999999999999998543
No 360
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=79.20 E-value=0.61 Score=38.26 Aligned_cols=53 Identities=21% Similarity=0.312 Sum_probs=44.9
Q ss_pred cccchheccccccceeeeeeccCCCCceEEEEEechhhhcCchHHHhhhCCCceEe
Q 003378 721 ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFP 776 (824)
Q Consensus 721 ~~g~v~~~L~~RRg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~ 776 (824)
.+|+|...|.+..+.|.+.+..+ .+.+...+|..+.-.|...|+.+|+|++.+
T Consensus 18 ~~g~v~~~L~~~~~~I~~~~Y~~---~V~l~v~vp~~~~~~~~~~L~d~t~G~~~~ 70 (76)
T 3lh2_S 18 DITGILWLLGQVDGKIINSDVQA---FVLLRVALPAAKVAEFSAKLADFSGGSLQL 70 (76)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEE---EEEEEEEECC-CC-CHHHHHHHHHTTCCCB
T ss_pred CHHHHHHHHHHCCCEEEcccccC---eEEEEEEECHHHHHHHHHHHHHHhCCEEEE
Confidence 56788899999999999988743 588999999999999999999999999854
No 361
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=79.07 E-value=0.99 Score=44.29 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=19.7
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHH
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
...|+| +|.+|+|||||+..|..
T Consensus 21 ~~~i~i---~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 21 TFIIGI---SGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CEEEEE---EESTTSSHHHHHHHHHT
T ss_pred CeEEEE---ECCCCCCHHHHHHHHHH
Confidence 356788 99999999999999943
No 362
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=79.05 E-value=3.1 Score=35.81 Aligned_cols=65 Identities=22% Similarity=0.277 Sum_probs=48.5
Q ss_pred EEEeeecCCCCcceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEEe
Q 003378 372 VSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 447 (824)
Q Consensus 372 VfK~~~~~~~g~~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai~ 447 (824)
|-.++..+..|. +|=++|-+|+++++..++++..+ ..+++-++.+|.. ...+|+++.+|.=|+|.
T Consensus 11 Vr~vF~isk~g~-IAGc~V~~G~i~r~~~vRv~Rd~------~vI~eG~i~SLkr----~KddV~EV~~G~ECGi~ 75 (99)
T 1d1n_A 11 VRQTFKVSKVGT-IAGCYVTDGKITRDSKVRLIRQG------IVVYEGEIDSLKR----YKDDVREVAQGYECGLT 75 (99)
T ss_dssp ECCCCCCSSSCC-CEEEEECSSBCCSSSEEEEECSS------SEEEEEECSEEEC----SSSCCSCCBTTCEEEEE
T ss_pred EEEEEEcCCceE-EEEEEEEcCEEEcCCeEEEEECC------EEEEEeEEhhhcc----cccccceECCCcEEEEE
Confidence 333334455576 99999999999999999997532 2344567777764 45789999999999985
No 363
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=79.00 E-value=0.87 Score=47.48 Aligned_cols=19 Identities=37% Similarity=0.267 Sum_probs=17.3
Q ss_pred EEEeecCccCCCCCHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSL 31 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~l 31 (824)
.++| +|+.|+|||||+..|
T Consensus 49 ~~~l---iG~NGsGKSTLlk~l 67 (279)
T 2ihy_A 49 KWIL---YGLNGAGKTTLLNIL 67 (279)
T ss_dssp EEEE---ECCTTSSHHHHHHHH
T ss_pred EEEE---ECCCCCcHHHHHHHH
Confidence 4677 999999999999999
No 364
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=78.97 E-value=0.87 Score=46.74 Aligned_cols=19 Identities=37% Similarity=0.375 Sum_probs=17.2
Q ss_pred EEEeecCccCCCCCHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSL 31 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~l 31 (824)
.+++ +|+.|+|||||+..|
T Consensus 33 ~~~l---~G~nGsGKSTLl~~l 51 (253)
T 2nq2_C 33 ILAV---LGQNGCGKSTLLDLL 51 (253)
T ss_dssp EEEE---ECCSSSSHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHH
Confidence 3677 999999999999999
No 365
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=78.73 E-value=0.96 Score=43.43 Aligned_cols=22 Identities=18% Similarity=0.061 Sum_probs=18.9
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
.|++ .|..|+||||++..|...
T Consensus 3 ~I~i---~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIV---TGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEE---EECTTSCHHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHHH
Confidence 4677 999999999999999654
No 366
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=78.54 E-value=1.3 Score=44.97 Aligned_cols=28 Identities=14% Similarity=0.008 Sum_probs=23.4
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcCC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAGI 37 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~ 37 (824)
++..|++ .|.+||||||++..|...-|.
T Consensus 28 ~~~~I~l---~G~~GsGKsT~a~~L~~~~g~ 55 (243)
T 3tlx_A 28 PDGRYIF---LGAPGSGKGTQSLNLKKSHCY 55 (243)
T ss_dssp CCEEEEE---ECCTTSSHHHHHHHHHHHHCC
T ss_pred CCcEEEE---ECCCCCCHHHHHHHHHHHhCC
Confidence 5678888 999999999999999765553
No 367
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=78.52 E-value=4.3 Score=43.75 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=18.4
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
-+.| .|++|+|||||+-+++..
T Consensus 63 i~~I---~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 63 IVEI---FGQESSGKTTLALHAIAE 84 (356)
T ss_dssp EEEE---EESTTSSHHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHHH
Confidence 3456 899999999999999754
No 368
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=78.26 E-value=1.1 Score=42.55 Aligned_cols=24 Identities=25% Similarity=0.283 Sum_probs=20.1
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
+|+| +|..|+||||++..|....|
T Consensus 6 ~i~i---~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVF---IGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEE---ECCTTSCHHHHHHHHHHHHT
T ss_pred EEEE---EcCCCCCHHHHHHHHHHHcC
Confidence 4778 99999999999999965444
No 369
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=78.21 E-value=1.1 Score=44.05 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=19.7
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHH
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
...|+| +|..|+|||||+..|..
T Consensus 22 ~~~i~i---~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGI---DGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEE---EECTTSSHHHHHHHHHH
T ss_pred CeEEEE---ECCCCCCHHHHHHHHHH
Confidence 456788 99999999999999854
No 370
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=78.14 E-value=1.4 Score=44.98 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=22.7
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
++..|+| .|.+||||||++..|....|
T Consensus 21 ~~~iI~I---~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGV---SGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEE---ECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEE---ECCCCCCHHHHHHHHHHHhh
Confidence 4567888 99999999999999966555
No 371
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=78.09 E-value=3.1 Score=38.20 Aligned_cols=22 Identities=27% Similarity=0.194 Sum_probs=19.1
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHH
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLV 32 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll 32 (824)
..+|.+ .|.+|+|||+++.++-
T Consensus 24 ~~~vll---~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 24 DIAVWL---YGAPGTGRMTGARYLH 45 (145)
T ss_dssp CSCEEE---ESSTTSSHHHHHHHHH
T ss_pred CCCEEE---ECCCCCCHHHHHHHHH
Confidence 356788 9999999999999984
No 372
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=77.96 E-value=1.2 Score=41.63 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=16.3
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 003378 17 ANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 17 ~G~~~~GKTTL~~~ll~~ 34 (824)
+|+.|+||||++++|.+.
T Consensus 29 ~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 29 IGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 799999999999999753
No 373
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=77.93 E-value=1.3 Score=43.10 Aligned_cols=28 Identities=29% Similarity=0.229 Sum_probs=23.0
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
.++..|++ .|.+|+||||++..|....|
T Consensus 18 ~~~~~I~l---~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 18 GSHMRVLL---LGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CSCCEEEE---ECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 45567888 99999999999999965544
No 374
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=77.74 E-value=1.4 Score=43.10 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=20.9
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
..|++ .|..|+||||++..|....+
T Consensus 5 ~~I~i---~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAF---EGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEE---ECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEE---EcCCCCCHHHHHHHHHHHHh
Confidence 56788 99999999999999965443
No 375
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=77.64 E-value=1.4 Score=45.16 Aligned_cols=67 Identities=9% Similarity=-0.011 Sum_probs=41.5
Q ss_pred CceeEEEEcCCCccchHHH-HHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHh----CCCceE-EEEeCCCc
Q 003378 88 NEYLINLIDSPGHVDFSSE-VTAALRITDGALVVVDCIEGVCVQTETVLRQALG----ERIRPV-LTVNKMDR 154 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e-~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~----~~~p~i-lviNKiD~ 154 (824)
..|.+.||||||......- .......+|.+|+|+.+...-...+..+++.+.. .+++.+ +|+|+.+.
T Consensus 114 ~~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 186 (269)
T 1cp2_A 114 DDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKV 186 (269)
T ss_dssp TTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSS
T ss_pred cCCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCc
Confidence 4588999999996432110 1112357999999999865444444444444433 256654 88999874
No 376
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=77.59 E-value=1.2 Score=42.83 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=19.6
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHH
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
..|++ .|..|+||||++..|...
T Consensus 4 ~~I~i---~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVV---TGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEE---ECCTTSCHHHHHHHHHHH
T ss_pred eEEEE---ECCCCCCHHHHHHHHHHH
Confidence 45778 999999999999999653
No 377
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=77.29 E-value=1.1 Score=47.39 Aligned_cols=24 Identities=33% Similarity=0.315 Sum_probs=20.2
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHH
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
...|+| +|+.|+|||||+..|...
T Consensus 80 g~iigI---~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 80 PYIISI---AGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CEEEEE---EECTTSSHHHHHHHHHHH
T ss_pred CEEEEE---ECCCCCCHHHHHHHHHHH
Confidence 356788 999999999999999543
No 378
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=77.18 E-value=5.3 Score=42.27 Aligned_cols=41 Identities=17% Similarity=0.013 Sum_probs=35.4
Q ss_pred CEEEEEEeCCCCcchhHHHHHHHHHhCCCceE-EEEeCCCcc
Q 003378 115 DGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (824)
Q Consensus 115 D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~i-lviNKiD~~ 155 (824)
+++++|.-+..-....+++.+..+.+.++|+. +|+|++.-.
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~ 264 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPE 264 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCccc
Confidence 48899998887777888899999999999987 899998764
No 379
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=76.84 E-value=1.6 Score=42.47 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=22.4
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
+...|++ .|..|+||||++..|....|
T Consensus 14 ~~~~I~l---~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 14 QVSVIFV---LGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TCEEEEE---ECSTTSSHHHHHHHHHHHSS
T ss_pred CCcEEEE---ECCCCCCHHHHHHHHHHHcC
Confidence 4456888 99999999999999976555
No 380
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=76.75 E-value=1.2 Score=45.99 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=17.2
Q ss_pred EEEeecCccCCCCCHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSL 31 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~l 31 (824)
.+++ +|+.|+|||||+..|
T Consensus 32 ~~~i---~G~NGsGKSTLlk~l 50 (263)
T 2pjz_A 32 KVII---LGPNGSGKTTLLRAI 50 (263)
T ss_dssp EEEE---ECCTTSSHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHH
Confidence 3577 999999999999999
No 381
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=76.63 E-value=1.7 Score=41.53 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=21.2
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
...|++ .|..|+||||++..|....|
T Consensus 6 ~~~I~l---~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFV---LGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEE---EESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 346788 99999999999999965544
No 382
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=76.63 E-value=1.2 Score=41.62 Aligned_cols=21 Identities=33% Similarity=0.275 Sum_probs=18.2
Q ss_pred EEEeecCccCCCCCHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
.+++ +|+.|+|||||+.++..
T Consensus 38 ~~~l---~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 38 FIYV---WGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp EEEE---ESSSTTTTCHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHH
Confidence 4667 99999999999999954
No 383
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=76.62 E-value=1.5 Score=44.68 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=21.7
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcCC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAGI 37 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g~ 37 (824)
..|+| +|+.|||||||+..|...-|.
T Consensus 28 ~~I~I---~G~~GsGKSTl~k~La~~Lg~ 53 (252)
T 4e22_A 28 PVITV---DGPSGAGKGTLCKALAESLNW 53 (252)
T ss_dssp CEEEE---ECCTTSSHHHHHHHHHHHTTC
T ss_pred cEEEE---ECCCCCCHHHHHHHHHHhcCC
Confidence 46888 999999999999999655554
No 384
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=76.58 E-value=7.9 Score=41.31 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=20.3
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHH
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
..-.+.+ .|++|+|||||+.++...
T Consensus 43 ~~~~vll---~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALL---YGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEE---CBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEE---ECCCCCCHHHHHHHHHHH
Confidence 3446777 999999999999999643
No 385
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=76.36 E-value=1.4 Score=47.58 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=18.6
Q ss_pred EEEeecCccCCCCCHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
.|+| +|+.|||||||+.+|+.
T Consensus 125 ~i~I---~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLV---TGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEE---ECSTTSCHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHh
Confidence 5777 99999999999999964
No 386
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=76.32 E-value=1.3 Score=43.20 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=19.7
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHH
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
...|++ .|..|+||||++..|..
T Consensus 4 ~~~I~l---~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVF---EGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEE---ECCTTSSHHHHHHHHHH
T ss_pred CcEEEE---EcCCCCCHHHHHHHHHH
Confidence 356888 99999999999999944
No 387
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=76.24 E-value=1.2 Score=48.23 Aligned_cols=20 Identities=30% Similarity=0.228 Sum_probs=17.5
Q ss_pred EEEeecCccCCCCCHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLV 32 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll 32 (824)
.++| +|+.|||||||+..|.
T Consensus 56 i~~I---iGpnGaGKSTLlr~i~ 75 (366)
T 3tui_C 56 IYGV---IGASGAGKSTLIRCVN 75 (366)
T ss_dssp EEEE---ECCTTSSHHHHHHHHH
T ss_pred EEEE---EcCCCchHHHHHHHHh
Confidence 3577 9999999999999993
No 388
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=76.18 E-value=1.6 Score=40.99 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.0
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
+|++ .|..||||||++..|....|
T Consensus 2 ~I~l---~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYL---IGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEE---ESCTTSCHHHHHHHHHHHHT
T ss_pred eEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 4777 99999999999999965444
No 389
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=76.04 E-value=1.1 Score=48.49 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=18.7
Q ss_pred EEEeecCccCCCCCHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
.++| +|+.|+|||||++.|+.
T Consensus 177 ~i~i---vG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 177 VIVV---AGETGSGKTTLMKALMQ 197 (361)
T ss_dssp CEEE---EESSSSCHHHHHHHHHT
T ss_pred EEEE---ECCCCCCHHHHHHHHHh
Confidence 5788 99999999999999953
No 390
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=76.00 E-value=1.1 Score=46.87 Aligned_cols=19 Identities=37% Similarity=0.363 Sum_probs=17.3
Q ss_pred EEEeecCccCCCCCHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSL 31 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~l 31 (824)
.++| +|+.|+|||||+..|
T Consensus 66 ~~~i---~G~NGsGKSTLlk~l 84 (290)
T 2bbs_A 66 LLAV---AGSTGAGKTSLLMMI 84 (290)
T ss_dssp EEEE---EESTTSSHHHHHHHH
T ss_pred EEEE---ECCCCCcHHHHHHHH
Confidence 4677 999999999999998
No 391
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=75.86 E-value=1.8 Score=41.69 Aligned_cols=24 Identities=17% Similarity=0.404 Sum_probs=20.6
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHH
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
...|++ +|.+|+||||++..|...
T Consensus 10 ~~~I~l---~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILI---TGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEE---ECSTTSSHHHHHHHHHHH
T ss_pred CCEEEE---ECCCCCCHHHHHHHHHHh
Confidence 456888 999999999999999655
No 392
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=75.78 E-value=1.4 Score=44.99 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=20.0
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
.|+| +|..|+|||||+..|....+
T Consensus 3 li~I---~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLI---YGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEE---ECCTTSSHHHHHHHHHHHHC
T ss_pred EEEE---ECCCCcCHHHHHHHHHhcCC
Confidence 3567 89999999999999976554
No 393
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=75.74 E-value=1.5 Score=43.46 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=19.7
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHH
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
...|+| .|..||||||++..|..
T Consensus 4 ~~~I~i---~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVAL---TGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEE---ECCTTSCHHHHHHHHHH
T ss_pred ceEEEE---ECCCCCCHHHHHHHHHH
Confidence 357888 99999999999999843
No 394
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=75.72 E-value=1.1 Score=48.38 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.1
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHH
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
-+++| +|+.|+|||||+..|...
T Consensus 171 ~k~~I---vG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 171 KTVAI---LGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EEEEE---ECCTTSHHHHHHHHHHHH
T ss_pred CeEEE---ECCCCCCHHHHHHHHHHH
Confidence 46788 999999999999999654
No 395
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=75.61 E-value=1.5 Score=43.37 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=21.7
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
...|++ .|..|+||||++..|....+
T Consensus 4 ~~~I~l---~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVL---IGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEE---ECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEE---ECCCCCCHHHHHHHHHHHcC
Confidence 457888 99999999999999965544
No 396
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=75.35 E-value=1.4 Score=42.22 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=18.1
Q ss_pred EEEeecCccCCCCCHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
.|++ .|..||||||++..|..
T Consensus 2 ~I~l---~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAF---EGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEE---ECSTTSCHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHH
Confidence 4677 99999999999999954
No 397
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=75.23 E-value=1.3 Score=43.31 Aligned_cols=23 Identities=35% Similarity=0.339 Sum_probs=19.9
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHH
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
...|++ .|..|+||||++..|..
T Consensus 9 ~~~I~l---~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVL---EGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEE---EESTTSSHHHHHHHHHH
T ss_pred CcEEEE---ECCCCCCHHHHHHHHHH
Confidence 456888 99999999999999954
No 398
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=75.23 E-value=1.6 Score=43.44 Aligned_cols=27 Identities=11% Similarity=0.207 Sum_probs=21.8
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
+...|++ .|..|+||||++..|....|
T Consensus 6 ~~~~I~l---~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 6 RLLRAVI---MGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp -CCEEEE---EECTTSSHHHHHHHHHHHSS
T ss_pred cCcEEEE---ECCCCCCHHHHHHHHHHHcC
Confidence 3456888 99999999999999966554
No 399
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=75.21 E-value=0.92 Score=47.96 Aligned_cols=20 Identities=35% Similarity=0.419 Sum_probs=17.9
Q ss_pred EEEeecCccCCCCCHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLV 32 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll 32 (824)
.++| +|+.|+|||||+..|+
T Consensus 82 ~vai---vG~sGsGKSTLl~ll~ 101 (306)
T 3nh6_A 82 TLAL---VGPSGAGKSTILRLLF 101 (306)
T ss_dssp EEEE---ESSSCHHHHHHHHHHT
T ss_pred EEEE---ECCCCchHHHHHHHHH
Confidence 5788 9999999999999883
No 400
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=75.19 E-value=1.6 Score=44.15 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=22.1
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
+++.|+| .|++|+||||++..|....|
T Consensus 8 ~~~~i~i---~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 8 GSLVVAV---DGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp -CCEEEE---ECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 3567888 99999999999999965544
No 401
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=75.01 E-value=1.5 Score=42.21 Aligned_cols=26 Identities=23% Similarity=0.288 Sum_probs=21.4
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
...|++ .|..|+||||++..|....|
T Consensus 9 ~~~I~l---~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFV---VGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEE---EECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 356788 99999999999999965544
No 402
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=75.00 E-value=1.3 Score=47.88 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=17.5
Q ss_pred EEEeecCccCCCCCHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLV 32 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll 32 (824)
-+++ +|+.|+|||||+..|.
T Consensus 32 ~~~l---lGpsGsGKSTLLr~ia 51 (359)
T 3fvq_A 32 ILFI---IGASGCGKTTLLRCLA 51 (359)
T ss_dssp EEEE---EESTTSSHHHHHHHHH
T ss_pred EEEE---ECCCCchHHHHHHHHh
Confidence 3577 9999999999999993
No 403
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=74.75 E-value=1.4 Score=47.57 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=17.5
Q ss_pred EEEeecCccCCCCCHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLV 32 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll 32 (824)
.+++ +|+.|+|||||+..|.
T Consensus 43 ~~~l---lGpnGsGKSTLLr~ia 62 (355)
T 1z47_A 43 MVGL---LGPSGSGKTTILRLIA 62 (355)
T ss_dssp EEEE---ECSTTSSHHHHHHHHH
T ss_pred EEEE---ECCCCCcHHHHHHHHh
Confidence 3577 9999999999999993
No 404
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=74.75 E-value=1.7 Score=41.52 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=20.6
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
..|.+ .|.+|+||||++..|....|
T Consensus 12 ~~i~i---~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 12 PNILL---TGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCEEE---ECSTTSSHHHHHHHHHHHHC
T ss_pred CeEEE---EeCCCCCHHHHHHHHHHHhC
Confidence 45778 99999999999999965444
No 405
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=74.68 E-value=12 Score=36.07 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=18.6
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
.+.+ .|..|+|||||+.++...
T Consensus 40 ~~ll---~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLF---SGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEE---ECSTTSSHHHHHHHHHHH
T ss_pred eEEE---ECCCCCCHHHHHHHHHHH
Confidence 3777 999999999999999543
No 406
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=74.65 E-value=1.4 Score=42.47 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=18.0
Q ss_pred EEEeecCccCCCCCHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
.|++ .|..|+||||++..|..
T Consensus 2 ~I~l---~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITF---EGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHH
Confidence 3677 99999999999999943
No 407
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=74.60 E-value=1.6 Score=47.45 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=18.7
Q ss_pred EEEeecCccCCCCCHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
.|++ +|+.|+|||||+..|+.
T Consensus 138 ~i~i---vG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILV---TGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEE---ECSSSSSHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHh
Confidence 4778 99999999999999964
No 408
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=74.47 E-value=1.9 Score=40.57 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=20.1
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
+|++ .|..|+||||++..|....|
T Consensus 9 ~i~l---~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 9 HLVL---IGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp EEEE---ESCTTSSHHHHHHHHHHHHT
T ss_pred eEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 6777 99999999999999865444
No 409
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=74.40 E-value=1.4 Score=47.56 Aligned_cols=20 Identities=30% Similarity=0.192 Sum_probs=17.5
Q ss_pred EEEeecCccCCCCCHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLV 32 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll 32 (824)
.+++ +|+.|+|||||+..|.
T Consensus 31 ~~~l---lGpnGsGKSTLLr~ia 50 (359)
T 2yyz_A 31 FVAL---LGPSGCGKTTTLLMLA 50 (359)
T ss_dssp EEEE---ECSTTSSHHHHHHHHH
T ss_pred EEEE---EcCCCchHHHHHHHHH
Confidence 3577 9999999999999993
No 410
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=74.38 E-value=1.5 Score=42.35 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=21.5
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
...|++ .|..|+||||++..|....|
T Consensus 12 ~~~I~l---~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFI---IGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEE---EECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 346888 99999999999999966544
No 411
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=74.27 E-value=1.7 Score=42.86 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.3
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
+|++ .|..|+||||++..|....|
T Consensus 2 ~I~l---~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIIL---LGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEE---EESTTSSHHHHHHHHHHHHC
T ss_pred EEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 5778 99999999999999966544
No 412
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=74.20 E-value=1.8 Score=41.39 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=20.0
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
.|++ .|.+|+||||++..|....|
T Consensus 4 ~I~l---~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVL---VGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEE---ECSTTSSHHHHHHHHHHHHT
T ss_pred eEEE---ECCCCCCHHHHHHHHHHHcC
Confidence 3778 99999999999999965544
No 413
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=74.19 E-value=0.79 Score=45.04 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=18.6
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
.|++ .|..|+||||+++.|...
T Consensus 2 ~I~i---~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAI---EGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEE---EEEEEEEHHHHHHHHHHH
T ss_pred EEEE---EcCCCCCHHHHHHHHHHH
Confidence 3677 999999999999999543
No 414
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=74.18 E-value=1.9 Score=41.31 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=20.4
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHH
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
+...|++ .|..|+||||++..|...
T Consensus 12 ~~~~i~l---~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWL---TGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEE---ECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEE---EcCCCCCHHHHHHHHHHH
Confidence 3456778 999999999999999543
No 415
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=73.98 E-value=6.7 Score=42.20 Aligned_cols=21 Identities=38% Similarity=0.417 Sum_probs=17.9
Q ss_pred EEeecCccCCCCCHHHHHHHHHHH
Q 003378 11 VCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
+.| .|.+|+|||||+-+++..
T Consensus 66 i~I---~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 66 VEI---YGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp EEE---ECSTTSSHHHHHHHHHHH
T ss_pred EEE---ECCCCCCHHHHHHHHHHH
Confidence 556 899999999999999754
No 416
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=73.96 E-value=1.1 Score=47.93 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=18.0
Q ss_pred EEEeecCccCCCCCHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLV 32 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll 32 (824)
.+++ +|+.|+|||||++.|+
T Consensus 173 ~v~i---~G~~GsGKTTll~~l~ 192 (330)
T 2pt7_A 173 NVIV---CGGTGSGKTTYIKSIM 192 (330)
T ss_dssp CEEE---EESTTSCHHHHHHHGG
T ss_pred EEEE---ECCCCCCHHHHHHHHh
Confidence 5778 9999999999999994
No 417
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=73.95 E-value=11 Score=42.64 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=20.7
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
-.+.+ .|++|+|||||+.++....+
T Consensus 78 ~~lLL---~GppGtGKTtla~~la~~l~ 102 (516)
T 1sxj_A 78 RAAML---YGPPGIGKTTAAHLVAQELG 102 (516)
T ss_dssp SEEEE---ECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEE---ECCCCCCHHHHHHHHHHHcC
Confidence 35666 89999999999999976654
No 418
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=73.84 E-value=1.5 Score=47.47 Aligned_cols=20 Identities=30% Similarity=0.320 Sum_probs=17.5
Q ss_pred EEEeecCccCCCCCHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLV 32 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll 32 (824)
.+++ +|+.|+|||||+..|.
T Consensus 31 ~~~l---lGpnGsGKSTLLr~ia 50 (362)
T 2it1_A 31 FMAL---LGPSGSGKSTLLYTIA 50 (362)
T ss_dssp EEEE---ECCTTSSHHHHHHHHH
T ss_pred EEEE---ECCCCchHHHHHHHHh
Confidence 3577 9999999999999993
No 419
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=73.80 E-value=2.3 Score=41.50 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=22.5
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
.....|++ .|..||||||++..|....|
T Consensus 10 ~~~~iIgl---tG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 10 HHHMVIGV---TGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp CCEEEEEE---ECSTTSSHHHHHHHHHHHHC
T ss_pred ccceEEEE---ECCCCCCHHHHHHHHHHhcC
Confidence 34567888 99999999999999865434
No 420
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=73.73 E-value=1.8 Score=45.18 Aligned_cols=26 Identities=15% Similarity=0.303 Sum_probs=21.4
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHc
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAA 35 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~ 35 (824)
+...|.+ .|.+|+||||++..|....
T Consensus 32 ~~~livl---~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLL---GGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEE---ECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEE---ECCCCCCHHHHHHHHHHHh
Confidence 3456777 9999999999999997654
No 421
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=73.58 E-value=1.5 Score=47.58 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=17.5
Q ss_pred EEEeecCccCCCCCHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLV 32 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll 32 (824)
.+++ +|+.|+|||||+..|.
T Consensus 31 ~~~l---lGpnGsGKSTLLr~ia 50 (372)
T 1g29_1 31 FMIL---LGPSGCGKTTTLRMIA 50 (372)
T ss_dssp EEEE---ECSTTSSHHHHHHHHH
T ss_pred EEEE---ECCCCcHHHHHHHHHH
Confidence 3577 9999999999999993
No 422
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=73.56 E-value=1.1 Score=44.89 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=18.6
Q ss_pred eEEEeecCccCCCCCHHHHHHHHH
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLV 32 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll 32 (824)
.-|++ .|..|+|||||+..|.
T Consensus 21 ~~i~i---~G~~GsGKSTl~~~L~ 41 (230)
T 2vp4_A 21 FTVLI---EGNIGSGKTTYLNHFE 41 (230)
T ss_dssp EEEEE---ECSTTSCHHHHHHTTG
T ss_pred eEEEE---ECCCCCCHHHHHHHHH
Confidence 46788 9999999999999984
No 423
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=73.51 E-value=1.9 Score=40.67 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=19.9
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
.|++ .|..|+||||++..|....|
T Consensus 4 ~I~l---~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFM---VGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEE---ESCTTSSHHHHHHHHHHHHT
T ss_pred eEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 4777 99999999999999965444
No 424
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=73.39 E-value=1.6 Score=43.25 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=21.7
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
...|++ +|..|+||||++..|....+
T Consensus 5 ~~~I~l---~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMI---SGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEE---EESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 356788 99999999999999966555
No 425
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=73.39 E-value=1.8 Score=42.75 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=17.9
Q ss_pred EEEeecCccCCCCCHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
.+++ +|+.|+|||||+..|+.
T Consensus 25 ~~~i---~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIAL---TGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHH
T ss_pred EEEE---EcCCCCCHHHHHHHHHH
Confidence 3567 89999999999999963
No 426
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=73.34 E-value=1.6 Score=47.51 Aligned_cols=20 Identities=20% Similarity=0.199 Sum_probs=17.5
Q ss_pred EEEeecCccCCCCCHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLV 32 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll 32 (824)
.+++ +|+.|+|||||+..|.
T Consensus 39 ~~~l---lGpnGsGKSTLLr~ia 58 (372)
T 1v43_A 39 FLVL---LGPSGCGKTTTLRMIA 58 (372)
T ss_dssp EEEE---ECCTTSSHHHHHHHHH
T ss_pred EEEE---ECCCCChHHHHHHHHH
Confidence 3577 9999999999999993
No 427
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=73.31 E-value=1.9 Score=44.63 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.1
Q ss_pred EEeecCccCCCCCHHHHHHHHHHHc
Q 003378 11 VCLGPDANSTFAGKSTLTDSLVAAA 35 (824)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~ll~~~ 35 (824)
+++ +|++|+|||||+.++....
T Consensus 47 vlL---~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 47 VLL---AGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp EEE---ESSTTSCHHHHHHHHHHHT
T ss_pred EEE---ECCCCCcHHHHHHHHHHHc
Confidence 778 9999999999999995543
No 428
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=73.19 E-value=1.6 Score=47.56 Aligned_cols=19 Identities=32% Similarity=0.328 Sum_probs=17.2
Q ss_pred EEEeecCccCCCCCHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSL 31 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~l 31 (824)
-+++ +|+.|+|||||+..|
T Consensus 31 ~~~l---lGpsGsGKSTLLr~i 49 (381)
T 3rlf_A 31 FVVF---VGPSGCGKSTLLRMI 49 (381)
T ss_dssp EEEE---ECCTTSSHHHHHHHH
T ss_pred EEEE---EcCCCchHHHHHHHH
Confidence 3577 999999999999999
No 429
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=72.95 E-value=1.8 Score=41.30 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=18.8
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHH
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
..|++ .|..|+||||++..|..
T Consensus 6 ~~i~l---~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWL---TGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEE---ECCTTSSHHHHHHHHHH
T ss_pred cEEEE---ECCCCCCHHHHHHHHHH
Confidence 45777 99999999999999854
No 430
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=72.94 E-value=1.8 Score=47.84 Aligned_cols=22 Identities=23% Similarity=0.135 Sum_probs=19.1
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
.|+| +|+.|||||||+.+|+..
T Consensus 169 ii~I---~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILV---TGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEE---ECSTTSCHHHHHHHHHHH
T ss_pred eEEE---ECCCCCCHHHHHHHHHhh
Confidence 4677 999999999999999754
No 431
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=72.86 E-value=2.1 Score=42.29 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=21.6
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcCCc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAGII 38 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g~i 38 (824)
.|.+ +|++||||+|++..|...-|..
T Consensus 2 ~Iil---~GpPGsGKgTqa~~La~~~g~~ 27 (206)
T 3sr0_A 2 ILVF---LGPPGAGKGTQAKRLAKEKGFV 27 (206)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHHHHCCE
T ss_pred EEEE---ECCCCCCHHHHHHHHHHHHCCe
Confidence 4667 9999999999999997766654
No 432
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=72.84 E-value=1.6 Score=41.59 Aligned_cols=25 Identities=12% Similarity=0.062 Sum_probs=16.5
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
..|.+ .|..|+||||++..|....|
T Consensus 6 ~~I~l---~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWI---NGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEE---ECCC----CHHHHHHHHHST
T ss_pred eEEEE---ECCCCCCHHHHHHHHHHhcC
Confidence 45777 99999999999999955444
No 433
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=72.71 E-value=3.2 Score=44.45 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=16.0
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 003378 17 ANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 17 ~G~~~~GKTTL~~~ll~~ 34 (824)
.|.+|+|||||+-.+...
T Consensus 52 aG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 52 GARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp EECTTSCHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHH
Confidence 799999999999988654
No 434
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=72.66 E-value=3 Score=47.49 Aligned_cols=26 Identities=12% Similarity=0.204 Sum_probs=20.8
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHc
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAA 35 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~ 35 (824)
.+.-|.+ +|.+|+||||++..|....
T Consensus 34 ~~~lIvl---vGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 34 SPTVIVM---VGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCEEEEE---ECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEE---ECCCCCCHHHHHHHHHHHH
Confidence 3456777 9999999999999996443
No 435
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=72.65 E-value=1.6 Score=44.50 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=22.1
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
.+..|.+ +|.+|+||||++..|....+
T Consensus 31 ~~~~i~l---~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILL---GGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEE---ESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEE---ECCCCCCHHHHHHHHHHhcC
Confidence 4467788 99999999999999966543
No 436
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=72.36 E-value=2.1 Score=42.92 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=22.4
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
+...|++ .|..|+||||++..|...-+
T Consensus 15 ~~~~I~l---~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVL---LGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEE---ECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 4467888 99999999999999965544
No 437
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=72.09 E-value=8.6 Score=50.43 Aligned_cols=24 Identities=38% Similarity=0.340 Sum_probs=20.0
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHc
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAA 35 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~ 35 (824)
-.|.+ .|++|+|||+|+-++...+
T Consensus 1428 ~~vll---~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A 1428 RIVEI---YGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp SEEEE---ECCTTSSHHHHHHHHHHHH
T ss_pred eEEEE---ECCCCCCHHHHHHHHHHHH
Confidence 35667 8999999999999997654
No 438
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=71.94 E-value=1.8 Score=46.82 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=17.8
Q ss_pred EEeecCccCCCCCHHHHHHHHHHH
Q 003378 11 VCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
++| +|+.|||||||++++.+.
T Consensus 26 ~~i---~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 26 TVV---EGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEE---ECCTTSSHHHHHHHHHHH
T ss_pred EEE---ECCCCCCHHHHHHHHHHH
Confidence 457 899999999999999643
No 439
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=71.93 E-value=1.4 Score=46.67 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=16.5
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 003378 17 ANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 17 ~G~~~~GKTTL~~~ll~~ 34 (824)
.|..|||||||++.|+..
T Consensus 10 ~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 10 TGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EESSSSSCHHHHHHHHHS
T ss_pred EecCCCCHHHHHHHHHhh
Confidence 799999999999999864
No 440
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=71.82 E-value=5.3 Score=43.57 Aligned_cols=36 Identities=22% Similarity=0.212 Sum_probs=29.5
Q ss_pred CceeEEEEcCCCccchHHHHHHHHHhcCEEEEEEeCCC
Q 003378 88 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 125 (824)
Q Consensus 88 ~~~~i~liDTPGh~df~~e~~~~l~~~D~avlvvd~~~ 125 (824)
..|.+.|||||+.... .+..++..+|.+|+|+.+..
T Consensus 243 ~~yD~ViiD~pp~~~~--~~~~~l~~aD~vliv~~p~~ 278 (398)
T 3ez2_A 243 SDYDFILVDSGPHLDA--FLKNALASANILFTPLPPAT 278 (398)
T ss_dssp TTCSEEEEEECSCCSH--HHHHHHHHCSEEEEEECCSH
T ss_pred ccCCEEEEeCCCCccH--HHHHHHHHCCEEEEEecCch
Confidence 4688999999998753 46778889999999998753
No 441
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=71.76 E-value=4.5 Score=43.54 Aligned_cols=41 Identities=12% Similarity=0.008 Sum_probs=35.2
Q ss_pred hcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceE-EEEeCCC
Q 003378 113 ITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMD 153 (824)
Q Consensus 113 ~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~i-lviNKiD 153 (824)
.+|.+++|+.+.......+.+.++.+...++++. +|+|++.
T Consensus 234 ~~~~~vlV~~pe~~si~ea~r~~~~L~~~g~~~~gvVvN~v~ 275 (354)
T 2woj_A 234 DLTTFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLL 275 (354)
T ss_dssp TTEEEEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHcCCCCCEEEEecCC
Confidence 5789999999877666778888899999999977 8999998
No 442
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=71.73 E-value=5.6 Score=42.68 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=17.8
Q ss_pred EEeecCccCCCCCHHHHHHHHHHH
Q 003378 11 VCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
+.| .|++|+|||||+-+++..
T Consensus 64 v~I---~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 64 IEI---YGPESSGKTTVALHAVAN 84 (349)
T ss_dssp EEE---EESTTSSHHHHHHHHHHH
T ss_pred EEE---ECCCCCCHHHHHHHHHHH
Confidence 566 899999999999998653
No 443
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=71.42 E-value=2 Score=44.66 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.4
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHH
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLV 32 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll 32 (824)
++..|+| .|.+||||||++..|.
T Consensus 74 ~~~iI~I---~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGL---TGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEE---EECTTSCHHHHHHHHH
T ss_pred CCEEEEE---ECCCCCCHHHHHHHHH
Confidence 4567888 9999999999999986
No 444
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=70.85 E-value=2.2 Score=43.64 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.3
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
.|++ +|..|+||||+...|....|
T Consensus 50 ~i~l---~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 50 SMYL---VGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CEEE---ECSTTSCHHHHHHHHHHHHT
T ss_pred EEEE---ECCCCCCHHHHHHHHHHhcC
Confidence 5788 99999999999999965444
No 445
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=70.72 E-value=10 Score=39.92 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=19.4
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHH
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
.+|.+ .|.+|+|||+|+.++...
T Consensus 56 ~~vll---~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILF---SGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEE---ECSTTSSHHHHHHHHHHH
T ss_pred CeEEE---ECcCCCCHHHHHHHHHHH
Confidence 46777 999999999999999444
No 446
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=70.70 E-value=2.2 Score=42.76 Aligned_cols=41 Identities=5% Similarity=-0.079 Sum_probs=27.7
Q ss_pred CEEEEEEeCCCCcchhHHHHHHHHHhCCCceEEEEeCCCcc
Q 003378 115 DGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 155 (824)
Q Consensus 115 D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~ilviNKiD~~ 155 (824)
+.-+++||-..-........+..+...++|+|++.-..|-.
T Consensus 89 ~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~ 129 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFK 129 (223)
T ss_dssp TCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTT
T ss_pred CCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEecccccc
Confidence 45678899766554444345555556799999998877754
No 447
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=70.63 E-value=1.6 Score=49.68 Aligned_cols=20 Identities=25% Similarity=0.400 Sum_probs=18.0
Q ss_pred EEEeecCccCCCCCHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLV 32 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll 32 (824)
.+++ +|+.|||||||+++|+
T Consensus 262 ~i~I---~GptGSGKTTlL~aL~ 281 (511)
T 2oap_1 262 SAIV---VGETASGKTTTLNAIM 281 (511)
T ss_dssp CEEE---EESTTSSHHHHHHHHG
T ss_pred EEEE---ECCCCCCHHHHHHHHH
Confidence 4778 9999999999999994
No 448
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=70.52 E-value=2.5 Score=42.10 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=20.0
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
.|++ .|..|+||||++..|....|
T Consensus 2 ~I~l---~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILI---FGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEE---ECCTTSCHHHHHHHHHHHHT
T ss_pred EEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 4677 99999999999999965544
No 449
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=70.43 E-value=2.2 Score=41.80 Aligned_cols=20 Identities=20% Similarity=0.064 Sum_probs=17.8
Q ss_pred EEeecCccCCCCCHHHHHHHHHH
Q 003378 11 VCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
+++ +|++|+|||||+..|+.
T Consensus 23 ~~i---~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 23 TQV---YGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEE---ECSTTSSHHHHHHHHHH
T ss_pred EEE---ECCCCCCHHHHHHHHHH
Confidence 566 89999999999999966
No 450
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=70.37 E-value=1.4 Score=47.51 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=17.5
Q ss_pred EEEeecCccCCCCCHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLV 32 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll 32 (824)
.+++ +|+.|+|||||+..|.
T Consensus 28 ~~~l---lGpnGsGKSTLLr~ia 47 (348)
T 3d31_A 28 YFVI---LGPTGAGKTLFLELIA 47 (348)
T ss_dssp EEEE---ECCCTHHHHHHHHHHH
T ss_pred EEEE---ECCCCccHHHHHHHHH
Confidence 3577 9999999999999993
No 451
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=70.33 E-value=2.4 Score=42.93 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=18.9
Q ss_pred EEeecCccCCCCCHHHHHHHHHHHc
Q 003378 11 VCLGPDANSTFAGKSTLTDSLVAAA 35 (824)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~ll~~~ 35 (824)
+.+ +|++|+|||||+.++....
T Consensus 52 ~ll---~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLL---VGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEE---ECCTTSSHHHHHHHHHHHT
T ss_pred EEE---ECCCCCCHHHHHHHHHHHh
Confidence 777 9999999999999995443
No 452
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=69.88 E-value=2 Score=47.00 Aligned_cols=20 Identities=40% Similarity=0.421 Sum_probs=17.6
Q ss_pred EEEeecCccCCCCCHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLV 32 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll 32 (824)
.+++ +|+.|+|||||+..|.
T Consensus 49 ~~~l---lGpsGsGKSTLLr~ia 68 (390)
T 3gd7_A 49 RVGL---LGRTGSGKSTLLSAFL 68 (390)
T ss_dssp EEEE---EESTTSSHHHHHHHHH
T ss_pred EEEE---ECCCCChHHHHHHHHh
Confidence 4677 9999999999999983
No 453
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=69.21 E-value=7.7 Score=40.24 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=19.2
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHH
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
.++.+ .|++|+|||+|+.++...
T Consensus 68 ~~vll---~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 68 LHMSF---TGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CEEEE---EECTTSSHHHHHHHHHHH
T ss_pred ceEEE---ECCCCCCHHHHHHHHHHH
Confidence 46778 999999999999988543
No 454
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=69.08 E-value=3.6 Score=46.48 Aligned_cols=61 Identities=13% Similarity=0.100 Sum_probs=33.1
Q ss_pred eEEEEcCCCccc---hHHHHHHHHHhcCEEEEEEeCCCCcch-------------hHHHHHHHHHhCCCceEEE--EeC
Q 003378 91 LINLIDSPGHVD---FSSEVTAALRITDGALVVVDCIEGVCV-------------QTETVLRQALGERIRPVLT--VNK 151 (824)
Q Consensus 91 ~i~liDTPGh~d---f~~e~~~~l~~~D~avlvvd~~~gv~~-------------~t~~~l~~~~~~~~p~ilv--iNK 151 (824)
.+.+.|+||..+ +...+....+.-+.-++|||....+.. ....+-..+.+.++|++++ +||
T Consensus 327 ~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r 405 (503)
T 1q57_A 327 TFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKN 405 (503)
T ss_dssp CEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCC
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCc
Confidence 578889987433 333333434444667889998754321 1112224456778886655 455
No 455
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=68.98 E-value=11 Score=40.66 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=17.8
Q ss_pred EEeecCccCCCCCHHHHHHHHHHH
Q 003378 11 VCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
+.| .|.+++|||||+-+++..
T Consensus 77 i~I---~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 77 TEI---YGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp EEE---EESTTSSHHHHHHHHHHH
T ss_pred EEE---EcCCCCChHHHHHHHHHH
Confidence 455 899999999999999754
No 456
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=68.93 E-value=2.6 Score=41.68 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=21.1
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
..|++ .|..|+||||++..|....|
T Consensus 6 ~~I~l---~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLIL---IGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEE---EECTTSSHHHHHHHHHHHHC
T ss_pred eEEEE---ECCCCCCHHHHHHHHHHHhC
Confidence 56888 99999999999999965544
No 457
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=68.77 E-value=3 Score=39.38 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=19.3
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHH
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
-.+.+ .|..|+|||||+.++...
T Consensus 44 ~~~ll---~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVL---IGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEE---ECCTTSCHHHHHHHHHHH
T ss_pred CceEE---ECCCCCCHHHHHHHHHHH
Confidence 45677 999999999999999543
No 458
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=68.65 E-value=3.1 Score=42.50 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=19.5
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHH
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
..|++ .|.+|+||||++..|...
T Consensus 5 ~lIvl---~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 5 MLIIL---TGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEE---ECCTTSSHHHHHHHHHHH
T ss_pred EEEEE---EcCCCCCHHHHHHHHHHH
Confidence 45777 999999999999999654
No 459
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=68.62 E-value=22 Score=42.95 Aligned_cols=22 Identities=32% Similarity=0.375 Sum_probs=19.2
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
.|.+ .|++|+|||+|+.+|...
T Consensus 590 ~vLl---~Gp~GtGKT~lA~~la~~ 611 (854)
T 1qvr_A 590 SFLF---LGPTGVGKTELAKTLAAT 611 (854)
T ss_dssp EEEE---BSCSSSSHHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHHH
Confidence 6777 999999999999999654
No 460
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=68.62 E-value=2.5 Score=44.06 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=17.4
Q ss_pred EEeecCccCCCCCHHHHHHHHHH
Q 003378 11 VCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
++| +|+.|+|||||+..|..
T Consensus 38 ~~i---~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 38 IMV---TSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EEE---EESTTSSHHHHHHHHHH
T ss_pred EEE---EeCCCCCHHHHHHHHHH
Confidence 567 89999999999999854
No 461
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=68.58 E-value=12 Score=37.91 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=19.9
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHc
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAA 35 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~ 35 (824)
.+|.+ .|.+|+|||+|+.++....
T Consensus 30 ~~vll---~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLI---IGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEE---ECCTTSCHHHHHHHHHHTS
T ss_pred CCEEE---ECCCCCcHHHHHHHHHHhc
Confidence 46777 9999999999999995543
No 462
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=68.39 E-value=2.9 Score=40.54 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=20.3
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
.|+| .|..|+||||++..|....|
T Consensus 4 ~i~i---~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTI---DGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHHHHT
T ss_pred EEEE---ECCCCCCHHHHHHHHHHhcC
Confidence 5778 99999999999999966545
No 463
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=68.37 E-value=12 Score=39.05 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=19.8
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHc
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAA 35 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~ 35 (824)
..|.+ .|..|+|||||+.++....
T Consensus 39 ~~vll---~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 39 EHLLL---FGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCEE---ECCTTCCCHHHHHHHHHHH
T ss_pred CcEEE---ECCCCCCHHHHHHHHHHHh
Confidence 45777 9999999999999995443
No 464
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=68.27 E-value=2.7 Score=41.36 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=16.6
Q ss_pred ccCCCCCHHHHHHHHHHHc
Q 003378 17 ANSTFAGKSTLTDSLVAAA 35 (824)
Q Consensus 17 ~G~~~~GKTTL~~~ll~~~ 35 (824)
+|+.|+||||++++|.+..
T Consensus 29 ~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 29 IGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp ECCTTSSHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHh
Confidence 7999999999999996543
No 465
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=68.21 E-value=2.3 Score=47.56 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=18.5
Q ss_pred EEEeecCccCCCCCHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
.++| +|+.|+|||||+..|..
T Consensus 140 ~v~I---vGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 140 RVVI---VGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp CEEE---EESTTSSHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHhC
Confidence 4678 99999999999999954
No 466
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=67.86 E-value=3 Score=41.56 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=20.6
Q ss_pred EEeecCccCCCCCHHHHHHHHHHHcCCc
Q 003378 11 VCLGPDANSTFAGKSTLTDSLVAAAGII 38 (824)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~ll~~~g~i 38 (824)
|.+ +|++||||+|.+..|...-|..
T Consensus 32 I~l---lGpPGsGKgTqa~~L~~~~g~~ 56 (217)
T 3umf_A 32 IFV---LGGPGSGKGTQCEKLVQKFHFN 56 (217)
T ss_dssp EEE---ECCTTCCHHHHHHHHHHHHCCE
T ss_pred EEE---ECCCCCCHHHHHHHHHHHHCCc
Confidence 456 8999999999999997666643
No 467
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=67.84 E-value=1.5 Score=45.99 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=16.8
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHH
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
..-|+| .|.+||||||++..|..
T Consensus 5 ~~iIgI---tG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISV---TGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEE---ESCC---CCTHHHHHHH
T ss_pred ceEEEE---ECCCCCCHHHHHHHHHH
Confidence 356888 99999999999999954
No 468
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=67.74 E-value=1.4 Score=47.61 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=17.1
Q ss_pred EEEeecCccCCCCCHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSL 31 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~l 31 (824)
.+++ +|+.|+|||||+..|
T Consensus 33 ~~~l---lGpnGsGKSTLLr~i 51 (353)
T 1oxx_K 33 RFGI---LGPSGAGKTTFMRII 51 (353)
T ss_dssp EEEE---ECSCHHHHHHHHHHH
T ss_pred EEEE---ECCCCCcHHHHHHHH
Confidence 3577 999999999999998
No 469
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=67.66 E-value=8.5 Score=40.70 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=17.6
Q ss_pred EEeecCccCCCCCHHHHHHHHHHH
Q 003378 11 VCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
+-| .|++++|||||+-+++..
T Consensus 31 teI---~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 31 LIL---AGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp EEE---EESSSSSHHHHHHHHHHH
T ss_pred EEE---ECCCCCCHHHHHHHHHHH
Confidence 566 899999999998888653
No 470
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=67.64 E-value=2.7 Score=41.90 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=18.4
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
.+++ +|+.|+|||||+..|+..
T Consensus 26 ~~~i---~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEM---FGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEE---ECCTTSSHHHHHHHHHHH
T ss_pred EEEE---ECCCCCcHHHHHHHHHHH
Confidence 3566 899999999999999653
No 471
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=67.52 E-value=2.8 Score=45.06 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.0
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAA 35 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~ 35 (824)
.++| +|+.|+|||||+..|....
T Consensus 73 ~~gI---iG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGI---FAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEE---EECTTSSHHHHHHHHHHHS
T ss_pred EEEE---ECCCCCCHHHHHHHHhcCC
Confidence 5688 9999999999999997654
No 472
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=67.52 E-value=3 Score=43.01 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.0
Q ss_pred EEeecCccCCCCCHHHHHHHHHHHc
Q 003378 11 VCLGPDANSTFAGKSTLTDSLVAAA 35 (824)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~ll~~~ 35 (824)
|++ +|+.|+|||||+.++....
T Consensus 76 vll---~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLL---VGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEE---ECCTTSSHHHHHHHHHHHT
T ss_pred EEE---ECCCcChHHHHHHHHHHHc
Confidence 778 9999999999999995543
No 473
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=66.66 E-value=3.1 Score=40.86 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=18.8
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHH
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
..|++ .|..|+||||++..|..
T Consensus 26 ~~i~~---~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 26 LTIWL---TGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEE---ECSTTSSHHHHHHHHHH
T ss_pred CEEEE---ECCCCCCHHHHHHHHHH
Confidence 45777 99999999999999843
No 474
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=66.49 E-value=2.8 Score=47.13 Aligned_cols=21 Identities=33% Similarity=0.332 Sum_probs=18.2
Q ss_pred EEEeecCccCCCCCHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
.++| +|+.|+|||||+..|..
T Consensus 31 ~~~l---iG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTL---SGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEE---ECCTTSSHHHHHHHHHH
T ss_pred eEEE---ECCCCCcHHHHHHHHhc
Confidence 3577 99999999999999964
No 475
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=66.28 E-value=3.5 Score=41.48 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=22.3
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHHHHHcCC
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSLVAAAGI 37 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g~ 37 (824)
....+.++ +|.+||||||++..|...-|.
T Consensus 6 ~~~~~~~~---~G~pGsGKsT~a~~L~~~~g~ 34 (230)
T 3gmt_A 6 HHHMRLIL---LGAPGAGKGTQANFIKEKFGI 34 (230)
T ss_dssp ---CEEEE---ECCTTSCHHHHHHHHHHHHTC
T ss_pred ccccceee---ECCCCCCHHHHHHHHHHHhCC
Confidence 45678888 999999999999999765553
No 476
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=65.82 E-value=3.6 Score=39.87 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=19.6
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHH
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
..+.+ .|.+|+|||||+.++...
T Consensus 55 ~~~~l---~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYL---HGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEE---ECSTTSSHHHHHHHHHHH
T ss_pred CeEEE---ECCCCCCHHHHHHHHHHH
Confidence 56778 999999999999998543
No 477
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=65.58 E-value=3.1 Score=44.33 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=20.2
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
.+++ .|++|+|||||+..+....+
T Consensus 53 ~~ll---~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 53 HVLL---AGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CEEE---ESSTTSSHHHHHHHHHHHHT
T ss_pred eEEE---ECCCCCcHHHHHHHHHHHhC
Confidence 4677 99999999999999976554
No 478
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=65.43 E-value=3.1 Score=44.48 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=15.6
Q ss_pred ccCCCCCHHHHHHHHHH
Q 003378 17 ANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 17 ~G~~~~GKTTL~~~ll~ 33 (824)
+|+.|+|||||++++.+
T Consensus 29 ~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 29 IGQNGSGKSSLLDAILV 45 (339)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 79999999999999854
No 479
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=65.29 E-value=11 Score=39.37 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=20.6
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHc
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAA 35 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~ 35 (824)
..+|.+ .|.+|+|||+++.++....
T Consensus 25 ~~~vLi---~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 25 DATVLI---HGDSGTGKELVARALHACS 49 (304)
T ss_dssp TSCEEE---ESCTTSCHHHHHHHHHHHS
T ss_pred CCcEEE---ECCCCchHHHHHHHHHHhC
Confidence 356778 9999999999999996543
No 480
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=65.16 E-value=4 Score=43.62 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=21.1
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
..|+| +|+.++|||||+..|....+
T Consensus 8 ~lI~I---~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVI---VGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEE---ECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEE---ECCCcCcHHHHHHHHHHHcC
Confidence 35778 99999999999999976654
No 481
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=65.05 E-value=5.2 Score=42.92 Aligned_cols=41 Identities=12% Similarity=0.044 Sum_probs=34.8
Q ss_pred CEEEEEEeCCCCcchhHHHHHHHHHhCCCceE-EEEeCCCcc
Q 003378 115 DGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (824)
Q Consensus 115 D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~i-lviNKiD~~ 155 (824)
+++++|.-+..-....+++.+..+.+.++|+. +|+|++.-.
T Consensus 232 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~ 273 (348)
T 3io3_A 232 TTFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFA 273 (348)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred eEEEEEecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCccc
Confidence 57888888877777788889999999999987 899998764
No 482
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=65.04 E-value=3.7 Score=41.12 Aligned_cols=27 Identities=26% Similarity=0.430 Sum_probs=22.2
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHcC
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAAG 36 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~g 36 (824)
+...|+| +|..|+||||++..|....|
T Consensus 15 ~~~~i~i---~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAI---DGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEE---ECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEE---ECCCCCCHHHHHHHHHHHcC
Confidence 4457888 99999999999999865555
No 483
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=64.31 E-value=3.2 Score=41.67 Aligned_cols=26 Identities=12% Similarity=0.181 Sum_probs=21.1
Q ss_pred eeeEEEeecCccCCCCCHHHHHHHHHHHc
Q 003378 7 TTISVCLGPDANSTFAGKSTLTDSLVAAA 35 (824)
Q Consensus 7 ~~i~v~i~~~~G~~~~GKTTL~~~ll~~~ 35 (824)
+...|++ .|..|+||||++..|...-
T Consensus 25 ~g~~i~i---~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITF---EGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEE---ECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEE---EcCCCCCHHHHHHHHHHHH
Confidence 3456788 9999999999999996543
No 484
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=64.26 E-value=3.4 Score=42.92 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=18.8
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHH
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
..|.+ .|.+|+||||++..|..
T Consensus 3 ~~I~l---~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILT---IGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEE---ECCTTSSHHHHHHHHHH
T ss_pred eEEEE---ECCCCCCHHHHHHHHHH
Confidence 34677 99999999999999965
No 485
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=64.07 E-value=3.6 Score=44.51 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=21.2
Q ss_pred ceeeEEEeecCccCCCCCHHHHHHHH
Q 003378 6 FTTISVCLGPDANSTFAGKSTLTDSL 31 (824)
Q Consensus 6 ~~~i~v~i~~~~G~~~~GKTTL~~~l 31 (824)
.+.++|.+ +|..+|||||++.+|
T Consensus 31 ~~~~kill---lG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILL---LGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEE---ECSTTSSHHHHHHHH
T ss_pred cCccEEEE---ECCCCCcHHHHHHHH
Confidence 46789999 999999999999998
No 486
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=63.97 E-value=3.3 Score=42.70 Aligned_cols=21 Identities=38% Similarity=0.262 Sum_probs=18.0
Q ss_pred EEEeecCccCCCCCHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVA 33 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~ 33 (824)
.++| +|+.|+|||||+..++.
T Consensus 32 i~~i---~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGAL---VSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEE---EESTTSSHHHHHHHHHH
T ss_pred EEEE---EcCCCCCHHHHHHHHHH
Confidence 3566 89999999999999965
No 487
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=63.90 E-value=3.2 Score=47.94 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=18.0
Q ss_pred EEEeecCccCCCCCHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLV 32 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll 32 (824)
.+++ +|+.|+|||||++.|.
T Consensus 371 ~~~i---vG~sGsGKSTll~~l~ 390 (582)
T 3b5x_A 371 TVAL---VGRSGSGKSTIANLFT 390 (582)
T ss_pred EEEE---ECCCCCCHHHHHHHHh
Confidence 5678 9999999999999994
No 488
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=63.80 E-value=3.5 Score=45.76 Aligned_cols=23 Identities=22% Similarity=0.172 Sum_probs=19.9
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHHc
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAAA 35 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~~ 35 (824)
.++| +|+.|+|||||++.|....
T Consensus 159 ~~~I---vG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGL---FAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEE---EECTTSSHHHHHHHHHHHS
T ss_pred EEEE---ECCCCCCHHHHHHHHhccc
Confidence 5688 9999999999999997654
No 489
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=63.80 E-value=1.1 Score=45.31 Aligned_cols=18 Identities=39% Similarity=0.397 Sum_probs=16.3
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 003378 17 ANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 17 ~G~~~~GKTTL~~~ll~~ 34 (824)
+|+.|+|||||+++|...
T Consensus 33 ~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 33 SGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HSCCSHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 899999999999999654
No 490
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=63.68 E-value=3.5 Score=41.43 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=20.7
Q ss_pred eeEEEeecCccCCCCCHHHHHHHHHHHc
Q 003378 8 TISVCLGPDANSTFAGKSTLTDSLVAAA 35 (824)
Q Consensus 8 ~i~v~i~~~~G~~~~GKTTL~~~ll~~~ 35 (824)
...|++ -|..|+||||+++.|...-
T Consensus 2 ~~~i~~---~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSI---EGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEE---EECTTSSHHHHHHHHHHHC
T ss_pred CeEEEE---EcCCCCCHHHHHHHHHHHc
Confidence 346788 9999999999999996554
No 491
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=63.37 E-value=3.7 Score=44.62 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=18.9
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
.+++ +|++|+|||||+..|...
T Consensus 171 ~i~l---~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 171 YWLF---KGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp EEEE---ECSTTSSHHHHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHHHhh
Confidence 5677 999999999999999643
No 492
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=63.09 E-value=4.2 Score=41.18 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=19.9
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHHc
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAAA 35 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~~ 35 (824)
..|.+ .|++|+|||||+.++....
T Consensus 46 ~~vll---~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 46 KGVLM---VGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CEEEE---ECCTTSCHHHHHHHHHHHH
T ss_pred CeEEE---ECcCCCCHHHHHHHHHHHc
Confidence 45777 9999999999999995443
No 493
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=62.91 E-value=8.8 Score=39.08 Aligned_cols=66 Identities=18% Similarity=0.230 Sum_probs=47.2
Q ss_pred CceeEEEEcCCCcc-----ch-HHHHHHHHHhcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceE-EEEeCCC
Q 003378 88 NEYLINLIDSPGHV-----DF-SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMD 153 (824)
Q Consensus 88 ~~~~i~liDTPGh~-----df-~~e~~~~l~~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~i-lviNKiD 153 (824)
..+.+.+||+||-. +. ...+.-+-....-+|+|+|+..|-..++...++.+...++++. +++||+.
T Consensus 125 ~~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~i~~~~lt~~~l~~~g~~i~GvIlN~v~ 197 (251)
T 3fgn_A 125 RPGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNHTKLTLEALAAQQVSCAGLVIGSWP 197 (251)
T ss_dssp CTTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred hcCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCccHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 46789999999742 11 1122233344568999999988877777777777778899887 8999984
No 494
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=62.90 E-value=3.2 Score=47.98 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=17.6
Q ss_pred EEEeecCccCCCCCHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSL 31 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~l 31 (824)
.+++ +|+.|+|||||+..|
T Consensus 371 ~~~i---vG~sGsGKSTLl~~l 389 (582)
T 3b60_A 371 TVAL---VGRSGSGKSTIASLI 389 (582)
T ss_dssp EEEE---EECTTSSHHHHHHHH
T ss_pred EEEE---ECCCCCCHHHHHHHH
Confidence 5788 999999999999998
No 495
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=62.70 E-value=4.4 Score=40.04 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=19.4
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHH
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
-.+.+ .|++|+|||||+.++...
T Consensus 53 ~~~ll---~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 53 QAIYL---WGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SEEEE---ECSTTSSHHHHHHHHHHH
T ss_pred CeEEE---ECCCCCCHHHHHHHHHHH
Confidence 46777 999999999999999543
No 496
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=62.58 E-value=13 Score=33.08 Aligned_cols=69 Identities=14% Similarity=0.205 Sum_probs=49.6
Q ss_pred EEEEEEeeecCCCCc--ceeEEEEEeeeecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeccccCCCEEEE
Q 003378 369 MLYVSKMIPASDKGR--FFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM 446 (824)
Q Consensus 369 va~VfK~~~~~~~g~--~l~~~RV~sG~Lk~g~~v~v~~~~~~~~~~~~~~~~ki~~l~~~~G~~~~~v~~a~AGdIvai 446 (824)
+-.+|++.. .|. .+|=|+|-+|+++++..+++++.+ ..+++-++..|.+ ...+|+++.+|.=|+|
T Consensus 15 Vr~vF~isk---~g~~~~IAGC~V~~G~i~r~~~vRviRdg------~vI~eG~i~SLkr----fKdDVkEV~~G~ECGi 81 (120)
T 2crv_A 15 ILATFTVTE---GKKKIPVADCRVQKGQLERHKKFKLIRNG------QVIWKGSLTSLKH----HKDDISVIKTGMDCGL 81 (120)
T ss_dssp EEEEEEEEE---TTEEEEEEEEEEEESCEETTSCEEEEETT------EEEEEECCSEEES----SSSCCSEECTTCEEEE
T ss_pred EeEEEEeCC---CCceeEEeEEEEEcCEEEcCCeEEEEECC------EEEEEeEehhhcc----cccccceecCCCEEEE
Confidence 445676643 232 289999999999999999987522 2344557777764 4578999999999998
Q ss_pred ecccc
Q 003378 447 VGLDQ 451 (824)
Q Consensus 447 ~gl~~ 451 (824)
. +++
T Consensus 82 ~-l~~ 85 (120)
T 2crv_A 82 S-LDE 85 (120)
T ss_dssp E-CSC
T ss_pred E-Ecc
Confidence 5 443
No 497
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=62.43 E-value=3.7 Score=47.48 Aligned_cols=43 Identities=12% Similarity=0.010 Sum_probs=35.7
Q ss_pred hcCEEEEEEeCCCCcchhHHHHHHHHHhCCCceE-EEEeCCCcc
Q 003378 113 ITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 155 (824)
Q Consensus 113 ~~D~avlvvd~~~gv~~~t~~~l~~~~~~~~p~i-lviNKiD~~ 155 (824)
.+|.+++|+.+.......+...++.+.+.+++.. +|+|+++-.
T Consensus 489 ~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~~ 532 (589)
T 1ihu_A 489 ERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSI 532 (589)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEESTT
T ss_pred CCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCC
Confidence 4589999998877777778888888989999876 899998854
No 498
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=62.24 E-value=4 Score=39.18 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=18.1
Q ss_pred EEeecCccCCCCCHHHHHHHHHHH
Q 003378 11 VCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 11 v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
|.+ .|++|+|||||+-.|+..
T Consensus 19 vli---~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 19 VLI---TGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEE---EESSSSSHHHHHHHHHHT
T ss_pred EEE---EcCCCCCHHHHHHHHHHc
Confidence 556 999999999999999753
No 499
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=61.69 E-value=3.7 Score=38.64 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=19.1
Q ss_pred eEEEeecCccCCCCCHHHHHHHHHHH
Q 003378 9 ISVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 9 i~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
-.+.+ .|..|+|||||+.++...
T Consensus 44 ~~vll---~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPIL---LGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEE---ESCGGGCHHHHHHHHHHH
T ss_pred CceEE---ECCCCCCHHHHHHHHHHH
Confidence 35677 899999999999999544
No 500
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=61.68 E-value=3.8 Score=40.29 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=18.8
Q ss_pred EEEeecCccCCCCCHHHHHHHHHHH
Q 003378 10 SVCLGPDANSTFAGKSTLTDSLVAA 34 (824)
Q Consensus 10 ~v~i~~~~G~~~~GKTTL~~~ll~~ 34 (824)
-|+| +|++|+|||||+..|...
T Consensus 36 ~ilI---~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 36 GVLI---TGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEE---ECCCTTTTHHHHHHHHTT
T ss_pred EEEE---ECCCCCCHHHHHHHHHHh
Confidence 4677 999999999999999543
Done!