Your job contains 1 sequence.
>003386
MVFELFAQLMTLSVLHDKDNACNISTVAMNDGICVCVHVYMLSQLRSQIMAADQTGEPCW
SLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVL
IIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPY
FRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRF
PRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNV
SIVPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSV
THCVAADNKGLKYEAAKRRGDVIHYSWVLDCCSQKKLLQLQPKYYLHLSDSSKKKLQEEV
DEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHSTE
PLSPDWEVLLGLALRRLKLEISFHGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAR
EKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPTGMQESYLELCEEDLDMEEPSST
LETSDKQNVSSFPDGDGKQRGTRGVSPASPKREGKRKRGRPAGGSAKKRKSTVNLARRKR
PHVRNKPSKIYQNESDESNASDETEKKEEINREENHEDREMDDEENLETRQTNVVEDLES
LDRGKALQQEVVKDFGKEKQTVRAPDIEMRERYHSKDSETTDKQQVDAVQAMLLDMIPSL
GMKNEKTTNPIPKEESSSAEPSAEPTKKKKVSYKDIASKLLKDW
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 003386
(824 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2175544 - symbol:ATLIG4 species:3702 "Arabidop... 1871 5.8e-200 2
UNIPROTKB|E2R0G7 - symbol:LIG4 "DNA ligase" species:9615 ... 525 1.5e-48 1
ZFIN|ZDB-GENE-070820-10 - symbol:lig4 "ligase IV, DNA, AT... 521 5.5e-48 1
UNIPROTKB|Q5R6L3 - symbol:DNL4 "DNA ligase 4" species:960... 520 7.9e-48 1
MGI|MGI:1335098 - symbol:Lig4 "ligase IV, DNA, ATP-depend... 513 6.4e-47 1
UNIPROTKB|P49917 - symbol:LIG4 "DNA ligase 4" species:960... 512 8.5e-47 1
RGD|1304639 - symbol:Lig4 "ligase IV, DNA, ATP-dependent"... 499 3.4e-45 1
UNIPROTKB|F1P275 - symbol:LIG4 "DNA ligase" species:9031 ... 497 6.0e-45 1
UNIPROTKB|Q90YB1 - symbol:LIG4 "DNA ligase 4" species:903... 496 7.9e-45 1
UNIPROTKB|F1MB07 - symbol:LIG4 "DNA ligase" species:9913 ... 472 5.0e-42 1
UNIPROTKB|F1RLP1 - symbol:LIG4 "DNA ligase" species:9823 ... 458 2.0e-40 1
UNIPROTKB|Q23RI5 - symbol:TTHERM_00387050 "DNA ligase" sp... 268 3.1e-31 4
ASPGD|ASPL0000057134 - symbol:AN0097 species:162425 "Emer... 354 9.4e-31 2
UNIPROTKB|Q5BH83 - symbol:lig4 "DNA ligase 4" species:227... 354 9.4e-31 2
DICTYBASE|DDB_G0292760 - symbol:lig4 "BRCT domain-contain... 343 1.6e-27 1
POMBASE|SPCC1183.05c - symbol:lig4 "DNA ligase Lig4" spec... 308 7.8e-24 1
FB|FBgn0030506 - symbol:Lig4 "Ligase4" species:7227 "Dros... 300 5.9e-23 1
UNIPROTKB|Q7SB49 - symbol:lig-4 "DNA ligase 4" species:36... 232 1.3e-19 3
SGD|S000005531 - symbol:DNL4 "DNA ligase required for non... 231 1.9e-15 1
POMBASE|SPAC20G8.01 - symbol:cdc17 "ATP-dependent DNA lig... 226 4.8e-15 1
SGD|S000002323 - symbol:CDC9 "DNA ligase found in the nuc... 225 6.0e-15 1
CGD|CAL0006047 - symbol:orf19.6155 species:5476 "Candida ... 220 2.2e-14 1
UNIPROTKB|A8JH25 - symbol:LIG1 "DNA ligase" species:3055 ... 215 8.3e-14 1
UNIPROTKB|Q7RYJ3 - symbol:NCU06481 "DNA ligase" species:3... 214 1.3e-13 1
UNIPROTKB|Q5B061 - symbol:AN6069.2 "DNA ligase" species:2... 213 1.6e-13 1
ASPGD|ASPL0000001880 - symbol:AN6069 species:162425 "Emer... 213 1.7e-13 1
UNIPROTKB|Q980T8 - symbol:lig "DNA ligase" species:273057... 210 1.7e-13 1
UNIPROTKB|Q7RPC6 - symbol:PY01533 "DNA ligase" species:73... 208 4.9e-13 1
TAIR|locus:2199953 - symbol:LIG1 "DNA ligase 1" species:3... 206 7.5e-13 1
DICTYBASE|DDB_G0274493 - symbol:lig1 "DNA ligase I" speci... 206 1.3e-12 1
TAIR|locus:2010207 - symbol:AT1G49250 species:3702 "Arabi... 200 2.5e-12 1
FB|FBgn0262619 - symbol:DNA-ligI "DNA ligase I" species:7... 198 5.1e-12 1
GENEDB_PFALCIPARUM|MAL13P1.22 - symbol:MAL13P1.22 "DNA li... 198 6.8e-12 1
UNIPROTKB|Q8IES4 - symbol:PfLigI "DNA ligase" species:363... 198 6.8e-12 1
UNIPROTKB|Q75CA4 - symbol:LIG4 "DNA ligase 4" species:284... 191 4.3e-11 1
WB|WBGene00002985 - symbol:lig-1 species:6239 "Caenorhabd... 190 6.1e-11 2
UNIPROTKB|Q27474 - symbol:lig-1 "DNA ligase 1" species:62... 190 6.1e-11 2
UNIPROTKB|G4N7T1 - symbol:MGG_06370 "DNA ligase" species:... 189 6.2e-11 1
UNIPROTKB|Q75CS4 - symbol:ACL155W "DNA ligase" species:28... 182 2.5e-10 1
UNIPROTKB|F1RL99 - symbol:LIG1 "DNA ligase" species:9823 ... 182 3.7e-10 1
UNIPROTKB|A4IFC8 - symbol:LIG1 "DNA ligase" species:9913 ... 181 4.7e-10 1
UNIPROTKB|F6URE1 - symbol:LIG1 "DNA ligase" species:9615 ... 178 9.9e-10 1
UNIPROTKB|E2QTV4 - symbol:LIG1 "Uncharacterized protein" ... 178 1.0e-09 1
UNIPROTKB|F5GZ28 - symbol:LIG1 "DNA ligase" species:9606 ... 174 2.4e-09 1
UNIPROTKB|B4DTU4 - symbol:LIG1 "DNA ligase" species:9606 ... 174 2.6e-09 1
UNIPROTKB|P18858 - symbol:LIG1 "DNA ligase 1" species:960... 174 2.7e-09 1
UNIPROTKB|Q8TSR7 - symbol:lig1 "DNA ligase 1" species:188... 170 3.7e-09 1
UNIPROTKB|H9L029 - symbol:LIG1 "Uncharacterized protein" ... 166 1.2e-08 1
UNIPROTKB|H9L3I6 - symbol:LIG1 "Uncharacterized protein" ... 166 1.2e-08 1
UNIPROTKB|F1M624 - symbol:Lig1 "DNA ligase" species:10116... 167 1.5e-08 1
UNIPROTKB|F1M8E6 - symbol:Lig1 "DNA ligase" species:10116... 167 1.5e-08 1
RGD|621424 - symbol:Lig1 "ligase I, DNA, ATP-dependent" s... 167 1.5e-08 1
UNIPROTKB|I3L9T2 - symbol:I3L9T2 "Uncharacterized protein... 159 2.8e-08 1
UNIPROTKB|Q24FD9 - symbol:TTHERM_00865240 "DNA ligase" sp... 162 3.2e-08 1
MGI|MGI:101789 - symbol:Lig1 "ligase I, DNA, ATP-dependen... 163 4.2e-08 1
RGD|1309875 - symbol:Lig3 "ligase III, DNA, ATP-dependent... 162 5.5e-08 1
UNIPROTKB|D4A2K2 - symbol:Lig3 "DNA ligase" species:10116... 162 5.6e-08 1
UNIPROTKB|E2RNT6 - symbol:LIG3 "DNA ligase" species:9615 ... 160 9.0e-08 1
UNIPROTKB|J9P597 - symbol:LIG3 "DNA ligase" species:9615 ... 160 9.3e-08 1
UNIPROTKB|D4A837 - symbol:Lig3 "DNA ligase" species:10116... 162 9.9e-08 2
DICTYBASE|DDB_G0283857 - symbol:lig3 "DNA ligase III" spe... 154 1.2e-07 2
CGD|CAL0001558 - symbol:LIG4 species:5476 "Candida albica... 167 1.2e-07 2
UNIPROTKB|P52496 - symbol:LIG4 "DNA ligase 4" species:237... 167 1.2e-07 2
UNIPROTKB|F1MQY1 - symbol:LIG3 "DNA ligase" species:9913 ... 154 4.0e-07 1
MGI|MGI:109152 - symbol:Lig3 "ligase III, DNA, ATP-depend... 161 6.6e-07 2
UNIPROTKB|P49916 - symbol:LIG3 "DNA ligase 3" species:960... 151 9.3e-07 1
UNIPROTKB|F1P394 - symbol:LIG3 "DNA ligase" species:9031 ... 150 1.0e-06 1
UNIPROTKB|Q0IWT4 - symbol:Os10g0489200 "DNA ligase" speci... 147 1.9e-06 1
UNIPROTKB|O67398 - symbol:lig "Probable DNA ligase" speci... 145 2.0e-06 1
UNIPROTKB|Q0JKB6 - symbol:Os01g0685500 "Os01g0685500 prot... 139 2.9e-06 1
UNIPROTKB|A8JIN2 - symbol:DNL4 "DNA ligase IV" species:30... 120 5.7e-06 3
UNIPROTKB|Q8TMT1 - symbol:lig2 "DNA ligase 2" species:188... 133 6.5e-06 2
UNIPROTKB|A8IAY8 - symbol:CHLREDRAFT_165757 "Predicted pr... 101 0.00013 4
>TAIR|locus:2175544 [details] [associations]
symbol:ATLIG4 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003909 "DNA ligase
activity" evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006266 "DNA ligation" evidence=IBA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0032807 "DNA ligase IV complex" evidence=IBA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0006974 "response
to DNA damage stimulus" evidence=IMP] [GO:0010165 "response to
X-ray" evidence=IMP] [GO:0015074 "DNA integration" evidence=IMP]
[GO:0000723 "telomere maintenance" evidence=IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0048046 "apoplast" evidence=IDA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160
InterPro:IPR001357 Pfam:PF00533 GO:GO:0009506 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0048046 GO:GO:0006260 EMBL:AB023042 GO:GO:0006310
GO:GO:0006302 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0010165
eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
TIGRFAMs:TIGR00574 EMBL:AF233527 IPI:IPI00524567 RefSeq:NP_568851.2
UniGene:At.49182 UniGene:At.69713 ProteinModelPortal:Q9LL84
SMR:Q9LL84 IntAct:Q9LL84 STRING:Q9LL84 PaxDb:Q9LL84 PRIDE:Q9LL84
EnsemblPlants:AT5G57160.1 GeneID:835822 KEGG:ath:AT5G57160
GeneFarm:4927 TAIR:At5g57160 HOGENOM:HOG000083793 InParanoid:Q9LL84
KO:K10777 OMA:HMCPSTK PhylomeDB:Q9LL84 ProtClustDB:CLSN2680547
Genevestigator:Q9LL84 GermOnline:AT5G57160 GO:GO:0032807
Uniprot:Q9LL84
Length = 1219
Score = 1871 (663.7 bits), Expect = 5.8e-200, Sum P(2) = 5.8e-200
Identities = 349/529 (65%), Positives = 427/529 (80%)
Query: 55 TGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAG 114
+GEP WS+V H +VE+FFKET+ENRDEGIVLKDL SKWEPGDRSGKW+KLKPEYIRAG
Sbjct: 390 SGEPSWSIVVHAAADVERFFKETVENRDEGIVLKDLESKWEPGDRSGKWMKLKPEYIRAG 449
Query: 115 SDLDVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVV 174
+DLDVLII EVAQFLVALA+R + YPRRF+SFCRVGTGLSD+EL+ VV
Sbjct: 450 ADLDVLIIGGYYGSGRRGGEVAQFLVALADRAEANVYPRRFMSFCRVGTGLSDDELNTVV 509
Query: 175 TKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSA 234
+KLKPYFRK E+PK+APPSFYQVTN+SKERPDVWI+SPEKSIILSITSDIRTIRSEVF A
Sbjct: 510 SKLKPYFRKNEHPKKAPPSFYQVTNHSKERPDVWIDSPEKSIILSITSDIRTIRSEVFVA 569
Query: 235 PYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRK 294
PYSLRFPRID+VRYDKPWH+CLDVQ+FVELV+SSNGTTQK KE QD+ PK +SS++
Sbjct: 570 PYSLRFPRIDKVRYDKPWHECLDVQAFVELVNSSNGTTQKQKESESTQDN-PKVNKSSKR 628
Query: 295 GEKKNVSIVPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSM 354
GEKKNVS+VPS F+QTDVSDIKG+TSIFS+M+FYFVNVP ++SL++ HKMVVENGG FSM
Sbjct: 629 GEKKNVSLVPSQFIQTDVSDIKGKTSIFSNMIFYFVNVPRSHSLETFHKMVVENGGKFSM 688
Query: 355 NLNNSVTHCVAADNKGLKYEAAKRRGDVIHYSWVLDCCSXXXXXXXXXXYYLHLSDSSKK 414
NLNNSVTHC+AA++ G+KY+AAKR+ DVIH+SWVLDCCS Y+LHL+D+S+
Sbjct: 689 NLNNSVTHCIAAESSGIKYQAAKRQRDVIHFSWVLDCCSRNKMLPLLPKYFLHLTDASRT 748
Query: 415 KLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIY 474
KLQ+++DEFSD Y+WDLDL +KQ+LSN +SED K+IDYYKKK CP+ +WSC CC+Y
Sbjct: 749 KLQDDIDEFSDSYYWDLDLEGLKQVLSNAKQSEDSKSIDYYKKKLCPEKRWSCLLSCCVY 808
Query: 475 FYHSTEPLSPDWEVXXXXXXXXXXXEISFHGGKVCNNLANATHVVVLSVLGYDVNFNSLT 534
FY ++ LS + E E+ GGKV NNLA+A+H+VVL++ ++F ++
Sbjct: 809 FYPYSQTLSTEEEALLGIMAKRLMLEVLMAGGKVSNNLAHASHLVVLAMAEEPLDFTLVS 868
Query: 535 ESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPTGMQES 583
+SF+ EK LL K+LHVV S WLE+ L +E+K E Y+L+P M+ES
Sbjct: 869 KSFSEMEKRLLLKKRLHVVSSHWLEESLQREEKLCEDVYTLRPKYMEES 917
Score = 87 (35.7 bits), Expect = 5.8e-200, Sum P(2) = 5.8e-200
Identities = 42/183 (22%), Positives = 77/183 (42%)
Query: 657 RRKRPHVRNKPSKIYQNESDESNASXXXXXXXXXXXXXXXXXXXMDDEENLETRQTNVVE 716
R +R K +KI +ESDE++ +++EE TR+ ++ +
Sbjct: 1040 RVQRSRRGKKAAKIGGDESDENDELDGNNNVSADAEEGNAAGRSVENEE---TREPDIAK 1096
Query: 717 DLESLDRGKALQ-QEVVKDFG--------KEKQTVRAPDIE--MRERY---HSKDSETTD 762
ES R + +E ++D KEK + ++ + + + K +ET++
Sbjct: 1097 YTESQQRDNTVAVEEALQDSRNAKTEMDMKEKLQIHEDPLQAMLMKMFPIPSQKTTETSN 1156
Query: 763 KQQVDAVQAMLL-DMIPSLGMKNEKTTNPIPKXXXXXXXXXXXXTKKKKVSYKDIASKLL 821
+ + +A + + S K + T+ KKKKVSY+D+A +LL
Sbjct: 1157 RTTGEYRKANVSGECESSEKRKLDAETDNTSVNAGAESDVVPPLVKKKKVSYRDVAGELL 1216
Query: 822 KDW 824
KDW
Sbjct: 1217 KDW 1219
Score = 50 (22.7 bits), Expect = 4.7e-196, Sum P(2) = 4.7e-196
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 651 STVNLARRKRPHVRNKPSKIYQNESDESNAS 681
ST +L R +R + +PSKI +E++ES+AS
Sbjct: 968 STNSLQRVQRRRGK-QPSKISGDETEESDAS 997
>UNIPROTKB|E2R0G7 [details] [associations]
symbol:LIG4 "DNA ligase" species:9615 "Canis lupus
familiaris" [GO:0051402 "neuron apoptotic process" evidence=IEA]
[GO:0051276 "chromosome organization" evidence=IEA] [GO:0051103
"DNA ligation involved in DNA repair" evidence=IEA] [GO:0051102
"DNA ligation involved in DNA recombination" evidence=IEA]
[GO:0050769 "positive regulation of neurogenesis" evidence=IEA]
[GO:0048146 "positive regulation of fibroblast proliferation"
evidence=IEA] [GO:0045190 "isotype switching" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0035019 "somatic stem cell maintenance"
evidence=IEA] [GO:0033153 "T cell receptor V(D)J recombination"
evidence=IEA] [GO:0033152 "immunoglobulin V(D)J recombination"
evidence=IEA] [GO:0033077 "T cell differentiation in thymus"
evidence=IEA] [GO:0032807 "DNA ligase IV complex" evidence=IEA]
[GO:0010332 "response to gamma radiation" evidence=IEA] [GO:0010165
"response to X-ray" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007417 "central nervous system development"
evidence=IEA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
[GO:0005958 "DNA-dependent protein kinase-DNA ligase 4 complex"
evidence=IEA] [GO:0005925 "focal adhesion" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0002328 "pro-B cell
differentiation" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000012 "single strand break repair"
evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 InterPro:IPR021536 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333 PROSITE:PS00697
PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005886
GO:GO:0005524 GO:GO:0005737 GO:GO:0003677 GO:GO:0008283
GO:GO:0006260 GO:GO:0001701 GO:GO:0051402 GO:GO:0007417
GO:GO:0043524 GO:GO:0005925 GO:GO:0010332 GO:GO:0050769
GO:GO:0033077 GO:GO:0035019 GO:GO:0045190 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000793 GO:GO:0048146
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0010165
GO:GO:0051276 GO:GO:0000012 GO:GO:0005958 GO:GO:0006303
GO:GO:0033153 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 GO:GO:0006297 KO:K10777
OMA:HMCPSTK GO:GO:0032807 CTD:3981 GO:GO:0051102 GO:GO:0033152
GO:GO:0002328 GeneTree:ENSGT00700000104500 EMBL:AAEX03013370
RefSeq:XP_542663.2 ProteinModelPortal:E2R0G7
Ensembl:ENSCAFT00000009725 GeneID:485544 KEGG:cfa:485544
NextBio:20859524 Uniprot:E2R0G7
Length = 911
Score = 525 (189.9 bits), Expect = 1.5e-48, P = 1.5e-48
Identities = 150/525 (28%), Positives = 255/525 (48%)
Query: 64 AHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLII 122
AH EV E I+ R+EGI++K S ++P R WLK+KPEY+ D LD+LI+
Sbjct: 408 AHTKKEVIDALNEAIDKREEGIMIKHPLSIYKPDKRGEGWLKIKPEYVDGLMDELDILIV 467
Query: 123 XXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFR 182
++ FL A+AE+P P P F + CRVG+G + +EL + KL +++
Sbjct: 468 GGYWGKGSRGGMMSHFLCAVAEKPPPGEKPSVFHTLCRVGSGYTMKELYDLGLKLAKHWK 527
Query: 183 KYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPR 242
+ K+A PS E+P+V+IE P S+I+ + + + S+++ +LRFPR
Sbjct: 528 PFH--KKALPSSILC---GTEKPEVYIE-PCNSVIVQVKAT-EIVSSDMYKTGCTLRFPR 580
Query: 243 IDRVRYDKPWHDCLDVQSFVELVHSSNGT-TQKGKEYGGLQDDKPKQF-RSSRKGEKKNV 300
I+++R DK WH+C V +L ++G K + GG DD+P++ R + KK +
Sbjct: 581 IEKIREDKEWHECTTVDDLEQLRGKASGKLASKHLDIGG--DDEPQEKKRKAAPKIKKII 638
Query: 301 SIVPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSV 360
I+ H ++S+I ++IF D+ F ++ ++ L + E GG N
Sbjct: 639 GII-EHLKAPNLSNINKVSNIFEDVEFCVMSGTDSHPKPDLENRIAEFGGYIVQNPGPD- 696
Query: 361 THCVAADNKGLKYE--AAKRRGDVIHYSWVLDCCSXXXXXXXXXXYYLHLSDSSKKKLQE 418
T+CV A ++ ++ + + + DV+ W+L+C + +H+ S+K+
Sbjct: 697 TYCVIAGSENIRVKNIISSNKHDVVKPEWLLECFKTKSCVPWQPRFMIHMCPSTKEHFAR 756
Query: 419 EVDEFSDLYFWDLDLADIKQLLSNVDRS--EDPKT----IDYYKKKYCPQDKWSC-FHGC 471
E D + D YF DLDL +K++ S + S + P+ I + +Y C F C
Sbjct: 757 EYDCYGDSYFVDLDLNQLKEVFSGIKNSSKQTPREMASLIADLEYRYSWDRSPLCLFRHC 816
Query: 472 CIYF--YHSTEPLSPDWEVXXXXXXXXXXXEISFHGGKVCNNLANA-THVVVLSVLGYDV 528
+Y Y LS E E+ FHG KV + LA +HV++ G D
Sbjct: 817 IVYLDLYAVINDLSTKIE---GTRLAITALELRFHGAKVVSCLAQGVSHVII----GEDH 869
Query: 529 NFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEY 573
+ ++ +SF K +K +++ W+ + + K + EE +Y
Sbjct: 870 SRVAVLKSFRRTLK-----RKFKILQQDWVTESIDKCELQEENQY 909
>ZFIN|ZDB-GENE-070820-10 [details] [associations]
symbol:lig4 "ligase IV, DNA, ATP-dependent"
species:7955 "Danio rerio" [GO:0051103 "DNA ligation involved in
DNA repair" evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0003909 "DNA ligase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 InterPro:IPR021536
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533
ZFIN:ZDB-GENE-070820-10 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OMA:HMCPSTK GeneTree:ENSGT00700000104500
EMBL:BX908780 IPI:IPI00860741 Ensembl:ENSDART00000085648
Bgee:F1Q9E8 Uniprot:F1Q9E8
Length = 909
Score = 521 (188.5 bits), Expect = 5.5e-48, P = 5.5e-48
Identities = 145/517 (28%), Positives = 243/517 (47%)
Query: 67 VDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIXXX 125
+ EV E I+NR+EGI++KD S ++P R WLK+KPEY+ D LD+LI+
Sbjct: 416 MQEVVNSLNEAIDNREEGIMVKDPMSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGY 475
Query: 126 XXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYE 185
++ FL A+AE P+P P F + CR+G+G + +EL + KL +++ Y
Sbjct: 476 WGKGRRSGMLSHFLCAVAEVPSPGEKPTVFHTLCRIGSGYTLKELYDLGVKLAKHWKVYN 535
Query: 186 YPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDR 245
K PP+ E+P+V+IE P S+IL + + + SE++ +LRFPRI+R
Sbjct: 536 --KNNPPAAILC---GTEKPEVYIE-PRNSVILQVKA-AEIVTSEMYKTDCTLRFPRIER 588
Query: 246 VRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKP-KQFRSSRKGEKKNVSIVP 304
+R DK WH C+ + + ++G + + + +D+P K+ R KK + ++
Sbjct: 589 IREDKEWHQCMTLDDLNQFRSKASG--KLASRHLNIHEDQPEKKKRKIVAKPKKTIGVI- 645
Query: 305 SHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCV 364
HF D+S + ET +F ++ F +N +S L K V GG N T+C
Sbjct: 646 DHFKSQDLSKVAKETDMFEEVEFCVINGDDEHSKAELEKGVARCGGIVVQNPGKD-TYCA 704
Query: 365 --AADNKGLKYEAAKRRGDVIHYSWVLDCCSXXXXXXXXXXYYLHLSDSSKKKLQEEVDE 422
A N +K + + DV+ +W+L+C + +H+S S+++ +E D+
Sbjct: 705 IAAVQNMRVKNLISSDQHDVVWATWLLECLENKQVIPWQPRHMIHMSPSTREHFAKEYDQ 764
Query: 423 FSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKW-----SCFHGCCIYFYH 477
+ D Y+ D ++ ++ + +E K++ + + ++ W S F YF
Sbjct: 765 YGDSYYVDTSEQQLRDVIERISSAE-VKSLSVAQIE--AENAWDDLPTSIFRPYSAYFDR 821
Query: 478 STEPLSPDWEVXXXXXXXXXXXEISFHGGKVCNNLANA-THVVVLSVLGYDVNFNSLTES 536
+ P V E FHGGKV L +HVVV D+ +L +
Sbjct: 822 CADIGDPK-SVICGTCLDTRALEFRFHGGKVVEKLKEGISHVVV-----EDMK-RAL-DL 873
Query: 537 FTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEY 573
T R H KK +V W+ D + +E +Y
Sbjct: 874 KTLRRLHA---KKFKIVHESWVTDSIKAGHVKDEIDY 907
>UNIPROTKB|Q5R6L3 [details] [associations]
symbol:DNL4 "DNA ligase 4" species:9601 "Pongo abelii"
[GO:0070419 "nonhomologous end joining complex" evidence=ISS]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 InterPro:IPR021536
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005524 GO:GO:0005634 GO:GO:0051301 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0007049 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574 KO:K10777
CTD:3981 HOVERGEN:HBG005516 GO:GO:0070419 EMBL:CR860475
RefSeq:NP_001126522.1 UniGene:Pab.18738 ProteinModelPortal:Q5R6L3
SMR:Q5R6L3 PRIDE:Q5R6L3 GeneID:100173511 KEGG:pon:100173511
InParanoid:Q5R6L3 Uniprot:Q5R6L3
Length = 911
Score = 520 (188.1 bits), Expect = 7.9e-48, P = 7.9e-48
Identities = 145/523 (27%), Positives = 248/523 (47%)
Query: 64 AHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLII 122
AH +EV E I+ R+EGI++K S ++P R WLK+KPEY+ D LD+LI+
Sbjct: 408 AHTKNEVIDALNEAIDKREEGIMIKQPLSIYKPDKRGEGWLKIKPEYVSGLMDELDILIV 467
Query: 123 XXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFR 182
++ FL A+AE+P P P F + RVG+G + +EL + KL Y++
Sbjct: 468 GGYWGKGSRGGMMSHFLCAVAEKPPPGEKPSVFHTLSRVGSGCTMKELYDLGLKLAKYWK 527
Query: 183 KYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPR 242
+ K+APPS E+P+V+IE P S+I+ I + + S+++ +LRFPR
Sbjct: 528 PFH--KKAPPSSILC---GTEKPEVYIE-PCNSVIVQIKA-AEIVPSDMYKTGCTLRFPR 580
Query: 243 IDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSI 302
I+++R DK WH+C+ + +L ++G Y G D+ ++ R + KK + I
Sbjct: 581 IEKIRDDKEWHECMTLDDLEQLRGKASGKLASKHFYVGGDDEPQEKKRKAAPKMKKVIGI 640
Query: 303 VPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTH 362
+ H +++++ ++IF D+ F ++ + L + E GG N T+
Sbjct: 641 I-EHLKAPNLTNVNKISNIFEDVEFCVMSGTDSQPKPDLENRIAEFGGYIVQNPGPD-TY 698
Query: 363 CVAADNKGLKYE--AAKRRGDVIHYSWVLDCCSXXXXXXXXXXYYLHLSDSSKKKLQEEV 420
CV A +K ++ + + DV+ +W+L+C + +H+ S+K+ E
Sbjct: 699 CVIAGSKNIRVKNIILSNKHDVVKPAWLLECFKTKSFVPWQPHFMIHMCPSTKEHFAREY 758
Query: 421 DEFSDLYFWDLDLADIKQLLSNVDRSED--PKTIDYYKKKYCPQDKWSC-----FHGCCI 473
D + D YF D DL +K++ S + S + P+ + + W C F +
Sbjct: 759 DCYGDSYFVDTDLNQLKEVFSGIKNSNEQTPEEMASLIADLEYRYSWDCSPLSMFRRHTV 818
Query: 474 YF--YHSTEPLSPDWEVXXXXXXXXXXXEISFHGGKVCNNLANA-THVVVLSVLGYDVNF 530
Y Y LS E E+ FHG KV + LA +HV++ G D
Sbjct: 819 YLDLYAVINDLSTKNE---GTRLAIKALELRFHGAKVVSCLAEGVSHVII----GED--- 868
Query: 531 NSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEY 573
+S F A + + +K +++ W+ D + K + EE +Y
Sbjct: 869 HSRIADFKAFRR--TFKRKFKILKESWITDSIDKCELQEENQY 909
>MGI|MGI:1335098 [details] [associations]
symbol:Lig4 "ligase IV, DNA, ATP-dependent" species:10090
"Mus musculus" [GO:0000012 "single strand break repair"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=ISO] [GO:0001701 "in
utero embryonic development" evidence=IMP] [GO:0002328 "pro-B cell
differentiation" evidence=IMP] [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003909 "DNA ligase activity" evidence=ISO]
[GO:0003910 "DNA ligase (ATP) activity" evidence=ISO;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISO;IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005694 "chromosome" evidence=IBA] [GO:0005958 "DNA-dependent
protein kinase-DNA ligase 4 complex" evidence=ISO;IDA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0006266 "DNA ligation"
evidence=ISO;IMP;IDA] [GO:0006273 "lagging strand elongation"
evidence=IBA] [GO:0006281 "DNA repair" evidence=IMP] [GO:0006289
"nucleotide-excision repair" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO;IGI;IMP]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=ISO;IMP] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007417
"central nervous system development" evidence=IGI;IMP] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0010165 "response to X-ray"
evidence=ISO] [GO:0010212 "response to ionizing radiation"
evidence=IMP] [GO:0010332 "response to gamma radiation"
evidence=IMP] [GO:0016874 "ligase activity" evidence=ISO]
[GO:0032807 "DNA ligase IV complex" evidence=ISO;IBA] [GO:0033077
"T cell differentiation in thymus" evidence=IMP] [GO:0033151 "V(D)J
recombination" evidence=ISO;IMP;IDA] [GO:0033152 "immunoglobulin
V(D)J recombination" evidence=IMP] [GO:0033153 "T cell receptor
V(D)J recombination" evidence=IMP] [GO:0035019 "somatic stem cell
maintenance" evidence=IMP] [GO:0043524 "negative regulation of
neuron apoptotic process" evidence=IGI;IMP] [GO:0045190 "isotype
switching" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0048146 "positive regulation of fibroblast
proliferation" evidence=IMP] [GO:0050769 "positive regulation of
neurogenesis" evidence=IMP] [GO:0051102 "DNA ligation involved in
DNA recombination" evidence=IMP] [GO:0051103 "DNA ligation involved
in DNA repair" evidence=ISO;IMP] [GO:0051276 "chromosome
organization" evidence=IGI] [GO:0051301 "cell division"
evidence=IEA] [GO:0051402 "neuron apoptotic process" evidence=IGI]
[GO:0070419 "nonhomologous end joining complex" evidence=ISO]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 InterPro:IPR021536
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357 MGI:MGI:1335098
Pfam:PF00533 GO:GO:0005524 GO:GO:0005694 GO:GO:0051301
GO:GO:0046872 GO:GO:0003677 GO:GO:0008283 GO:GO:0001701
GO:GO:0051402 GO:GO:0007417 GO:GO:0043524 GO:GO:0010332
GO:GO:0007049 GO:GO:0050769 GO:GO:0033077 GO:GO:0035019
GO:GO:0045190 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0048146 EMBL:CH466566 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0051276 GO:GO:0005958 GO:GO:0006303
GO:GO:0006289 GO:GO:0033153 GO:GO:0006273 eggNOG:COG1793
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 KO:K10777 OMA:HMCPSTK GO:GO:0032807 CTD:3981
HOGENOM:HOG000007831 HOVERGEN:HBG005516 OrthoDB:EOG4Q58NP
GO:GO:0051102 GO:GO:0033152 GO:GO:0002328 EMBL:AK030029
EMBL:AK148081 EMBL:AC138397 IPI:IPI00225019 RefSeq:NP_795927.2
UniGene:Mm.80584 ProteinModelPortal:Q8BTF7 STRING:Q8BTF7
PhosphoSite:Q8BTF7 PRIDE:Q8BTF7 Ensembl:ENSMUST00000095476
Ensembl:ENSMUST00000170033 GeneID:319583 KEGG:mmu:319583
UCSC:uc009kul.1 GeneTree:ENSGT00700000104500 InParanoid:Q8BTF7
NextBio:395028 CleanEx:MM_LIG4 Genevestigator:Q8BTF7
GermOnline:ENSMUSG00000049717 Uniprot:Q8BTF7
Length = 911
Score = 513 (185.6 bits), Expect = 6.4e-47, P = 6.4e-47
Identities = 148/525 (28%), Positives = 244/525 (46%)
Query: 64 AHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLII 122
AH EV + I+ R+EGI++K S ++P R WLK+KPEY+ D LDVLI+
Sbjct: 408 AHTKKEVVDALNDAIDKREEGIMVKHPLSIYKPDKRGEGWLKIKPEYVSGLMDELDVLIV 467
Query: 123 XXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFR 182
++ FL A+AE P P P F + CRVG+G + +EL + KL Y++
Sbjct: 468 GGYWGKGSRGGMMSHFLCAVAETPPPGDRPSVFHTLCRVGSGYTMKELYDLGLKLAKYWK 527
Query: 183 KYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPR 242
+ K++PPS E+P+V+IE P+ S+I+ I + + S+++ +LRFPR
Sbjct: 528 PFH--KKSPPSSILC---GTEKPEVYIE-PQNSVIVQIKA-AEIVPSDMYKTGSTLRFPR 580
Query: 243 IDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSI 302
I+++R DK WH+C+ + +L ++G + G DD+P++ R + K
Sbjct: 581 IEKIRDDKEWHECMTLGDLEQLRGKASGKLATKHLHVG-DDDEPREKRRKPISKTKKAIR 639
Query: 303 VPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTH 362
+ H ++S++ +++F D+ F ++ Y L + E GG N T+
Sbjct: 640 IIEHLKAPNLSNVNKVSNVFEDVEFCVMSGLDGYPKADLENRIAEFGGYIVQNPGPD-TY 698
Query: 363 CVAA--DNKGLKYEAAKRRGDVIHYSWVLDCCSXXXXXXXXXXYYLHLSDSSKKKLQEEV 420
CV A +N +K + + DV+ W+L+C + +H+ S+K+ E
Sbjct: 699 CVIAGSENVRVKNIISSDKNDVVKPEWLLECFKTKTCVPWQPRFMIHMCPSTKQHFAREY 758
Query: 421 DEFSDLYFWDLDLADIKQLLSNVDRSED-------PKTIDYYKKKYCPQDKWSCFHGCCI 473
D + D YF D DL +K++ + SE P D + S F I
Sbjct: 759 DCYGDSYFVDTDLDQLKEVFLGIKPSEQQTPEEMAPVIADLECRYSWDHSPLSMFRHYTI 818
Query: 474 YF--YHSTEPLSPDWEVXXXXXXXXXXXEISFHGGKVCNNLANA-THVVVLSVLGYDVNF 530
Y Y LS E E+ FHG KV + L+ +HV++ G D
Sbjct: 819 YLDLYAVINDLSSRIEATRLGITAL---ELRFHGAKVVSCLSEGVSHVII----GEDQR- 870
Query: 531 NSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSL 575
+T+ F + L KK +++ W+ D + K + EE +Y L
Sbjct: 871 -RVTD-FKIFRRML--KKKFKILQESWVSDSVDKGELQEENQYLL 911
>UNIPROTKB|P49917 [details] [associations]
symbol:LIG4 "DNA ligase 4" species:9606 "Homo sapiens"
[GO:0007049 "cell cycle" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051301 "cell division" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0033152 "immunoglobulin
V(D)J recombination" evidence=IEA] [GO:0071285 "cellular response
to lithium ion" evidence=IEA] [GO:0006273 "lagging strand
elongation" evidence=IBA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0016874 "ligase
activity" evidence=IDA] [GO:0006297 "nucleotide-excision repair,
DNA gap filling" evidence=IDA] [GO:0000012 "single strand break
repair" evidence=IDA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IDA] [GO:0006266 "DNA ligation" evidence=IDA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IMP;IDA;TAS] [GO:0033151 "V(D)J recombination"
evidence=IDA] [GO:0032807 "DNA ligase IV complex" evidence=IMP]
[GO:0002328 "pro-B cell differentiation" evidence=ISS] [GO:0005958
"DNA-dependent protein kinase-DNA ligase 4 complex"
evidence=ISS;IDA] [GO:0006302 "double-strand break repair"
evidence=ISS;IDA;TAS] [GO:0007417 "central nervous system
development" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0010332 "response to gamma radiation"
evidence=ISS] [GO:0033153 "T cell receptor V(D)J recombination"
evidence=ISS] [GO:0035019 "somatic stem cell maintenance"
evidence=ISS] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=ISS] [GO:0045190 "isotype switching"
evidence=ISS] [GO:0050769 "positive regulation of neurogenesis"
evidence=ISS] [GO:0051102 "DNA ligation involved in DNA
recombination" evidence=ISS] [GO:0051103 "DNA ligation involved in
DNA repair" evidence=ISS;IDA] [GO:0051276 "chromosome organization"
evidence=ISS] [GO:0001701 "in utero embryonic development"
evidence=ISS] [GO:0033077 "T cell differentiation in thymus"
evidence=ISS] [GO:0048146 "positive regulation of fibroblast
proliferation" evidence=ISS] [GO:0051402 "neuron apoptotic process"
evidence=ISS] [GO:0000793 "condensed chromosome" evidence=IDA]
[GO:0003909 "DNA ligase activity" evidence=IDA;TAS] [GO:0008022
"protein C-terminus binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0010165 "response to X-ray" evidence=IMP]
[GO:0070419 "nonhomologous end joining complex" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0016032 "viral reproduction" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0005925 "focal adhesion" evidence=IDA] Reactome:REACT_216
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 InterPro:IPR021536
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005886 GO:GO:0005524 GO:GO:0005737 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0016032 GO:GO:0051301 GO:GO:0046872
GO:GO:0003677 GO:GO:0008283 GO:GO:0001701 GO:GO:0051402
GO:GO:0007417 GO:GO:0043524 GO:GO:0005925 GO:GO:0010332
EMBL:AL157762 GO:GO:0007049 GO:GO:0050769 GO:GO:0033077
GO:GO:0035019 GO:GO:0045190 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0000793 GO:GO:0048146 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0010165 GO:GO:0051276
GO:GO:0000012 GO:GO:0005958 GO:GO:0006303 GO:GO:0033153
GO:GO:0071285 PDB:4HTP PDBsum:4HTP MIM:602450 Orphanet:39041
GO:GO:0006273 eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
GO:GO:0006297 BRENDA:6.5.1.1 KO:K10777 OMA:HMCPSTK GO:GO:0032807
CTD:3981 HOGENOM:HOG000007831 HOVERGEN:HBG005516 OrthoDB:EOG4Q58NP
EMBL:X83441 EMBL:AF479264 EMBL:BC037491 IPI:IPI00217669 PIR:I37079
RefSeq:NP_001091738.1 RefSeq:NP_002303.2 RefSeq:NP_996820.1
UniGene:Hs.166091 PDB:1IK9 PDB:2E2W PDB:3II6 PDB:3VNN PDB:4HTO
PDBsum:1IK9 PDBsum:2E2W PDBsum:3II6 PDBsum:3VNN PDBsum:4HTO
ProteinModelPortal:P49917 SMR:P49917 DIP:DIP-37958N IntAct:P49917
MINT:MINT-3018022 STRING:P49917 PhosphoSite:P49917 DMDM:88911290
PaxDb:P49917 PRIDE:P49917 DNASU:3981 Ensembl:ENST00000356922
Ensembl:ENST00000405925 Ensembl:ENST00000442234 GeneID:3981
KEGG:hsa:3981 UCSC:uc001vqn.3 GeneCards:GC13M108859 HGNC:HGNC:6601
HPA:HPA001334 MIM:601837 MIM:606593 neXtProt:NX_P49917
Orphanet:99812 PharmGKB:PA30375 InParanoid:P49917 PhylomeDB:P49917
ChiTaRS:LIG4 EvolutionaryTrace:P49917 GenomeRNAi:3981 NextBio:15604
Bgee:P49917 CleanEx:HS_LIG4 Genevestigator:P49917
GermOnline:ENSG00000174405 GO:GO:0051102 GO:GO:0033152
GO:GO:0002328 Uniprot:P49917
Length = 911
Score = 512 (185.3 bits), Expect = 8.5e-47, P = 8.5e-47
Identities = 144/524 (27%), Positives = 249/524 (47%)
Query: 64 AHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLII 122
AH +EV E I+ R+EGI++K S ++P R WLK+KPEY+ D LD+LI+
Sbjct: 408 AHTKNEVIDALNEAIDKREEGIMVKQPLSIYKPDKRGEGWLKIKPEYVSGLMDELDILIV 467
Query: 123 XXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFR 182
++ FL A+AE+P P P F + RVG+G + +EL + KL Y++
Sbjct: 468 GGYWGKGSRGGMMSHFLCAVAEKPPPGEKPSVFHTLSRVGSGCTMKELYDLGLKLAKYWK 527
Query: 183 KYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPR 242
+ ++APPS E+P+V+IE P S+I+ I + + S+++ +LRFPR
Sbjct: 528 PFH--RKAPPSSILC---GTEKPEVYIE-PCNSVIVQIKA-AEIVPSDMYKTGCTLRFPR 580
Query: 243 IDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEY-GGLQDDKPKQFRSSRKGEKKNVS 301
I+++R DK WH+C+ + +L ++G Y GG DD+P++ + + K V
Sbjct: 581 IEKIRDDKEWHECMTLDDLEQLRGKASGKLASKHLYIGG--DDEPQEKKRKAAPKMKKVI 638
Query: 302 IVPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVT 361
+ H +++++ ++IF D+ F ++ + L + E GG N T
Sbjct: 639 GIIEHLKAPNLTNVNKISNIFEDVEFCVMSGTDSQPKPDLENRIAEFGGYIVQNPGPD-T 697
Query: 362 HCVAADNKGLKYE--AAKRRGDVIHYSWVLDCCSXXXXXXXXXXYYLHLSDSSKKKLQEE 419
+CV A ++ ++ + + DV+ +W+L+C + +H+ S+K+ E
Sbjct: 698 YCVIAGSENIRVKNIILSNKHDVVKPAWLLECFKTKSFVPWQPRFMIHMCPSTKEHFARE 757
Query: 420 VDEFSDLYFWDLDLADIKQLLSNVDRSED--PKTIDYYKKKYCPQDKWSC-----FHGCC 472
D + D YF D DL +K++ S + S + P+ + + W C F
Sbjct: 758 YDCYGDSYFIDTDLNQLKEVFSGIKNSNEQTPEEMASLIADLEYRYSWDCSPLSMFRRHT 817
Query: 473 IYF--YHSTEPLSPDWEVXXXXXXXXXXXEISFHGGKVCNNLANA-THVVVLSVLGYDVN 529
+Y Y LS E E+ FHG KV + LA +HV++ G D
Sbjct: 818 VYLDSYAVINDLSTKNE---GTRLAIKALELRFHGAKVVSCLAEGVSHVII----GED-- 868
Query: 530 FNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEY 573
+S F A + + +K +++ W+ D + K + EE +Y
Sbjct: 869 -HSRVADFKAFRR--TFKRKFKILKESWVTDSIDKCELQEENQY 909
>RGD|1304639 [details] [associations]
symbol:Lig4 "ligase IV, DNA, ATP-dependent" species:10116
"Rattus norvegicus" [GO:0000012 "single strand break repair"
evidence=IEA;ISO] [GO:0000793 "condensed chromosome"
evidence=IEA;ISO] [GO:0001701 "in utero embryonic development"
evidence=IEA;ISO] [GO:0002328 "pro-B cell differentiation"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=ISO;IDA]
[GO:0003909 "DNA ligase activity" evidence=ISO] [GO:0003910 "DNA
ligase (ATP) activity" evidence=ISO;IDA] [GO:0005524 "ATP binding"
evidence=ISO;IDA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0005886 "plasma membrane" evidence=IEA;ISO]
[GO:0005925 "focal adhesion" evidence=IEA;ISO] [GO:0005958
"DNA-dependent protein kinase-DNA ligase 4 complex"
evidence=IEA;ISO] [GO:0006266 "DNA ligation" evidence=ISO;IDA]
[GO:0006273 "lagging strand elongation" evidence=IBA] [GO:0006281
"DNA repair" evidence=ISO] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IEA;ISO] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=ISO;IBA] [GO:0007417 "central
nervous system development" evidence=IEA;ISO] [GO:0008022 "protein
C-terminus binding" evidence=IEA;ISO] [GO:0008283 "cell
proliferation" evidence=IEA;ISO] [GO:0010165 "response to X-ray"
evidence=IEA;ISO] [GO:0010212 "response to ionizing radiation"
evidence=ISO] [GO:0010332 "response to gamma radiation"
evidence=IEA;ISO] [GO:0016874 "ligase activity" evidence=ISO]
[GO:0032807 "DNA ligase IV complex" evidence=ISO;IBA] [GO:0033077
"T cell differentiation in thymus" evidence=IEA;ISO] [GO:0033151
"V(D)J recombination" evidence=ISO;IBA] [GO:0033152 "immunoglobulin
V(D)J recombination" evidence=IEA;ISO] [GO:0033153 "T cell receptor
V(D)J recombination" evidence=IEA;ISO] [GO:0035019 "somatic stem
cell maintenance" evidence=IEA;ISO] [GO:0043524 "negative
regulation of neuron apoptotic process" evidence=IEA;ISO]
[GO:0045190 "isotype switching" evidence=IEA;ISO] [GO:0048146
"positive regulation of fibroblast proliferation" evidence=IEA;ISO]
[GO:0050769 "positive regulation of neurogenesis" evidence=IEA;ISO]
[GO:0051102 "DNA ligation involved in DNA recombination"
evidence=IEA;ISO] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IEA;ISO] [GO:0051276 "chromosome organization"
evidence=IEA;ISO] [GO:0051402 "neuron apoptotic process"
evidence=IEA;ISO] [GO:0070419 "nonhomologous end joining complex"
evidence=ISO] [GO:0071285 "cellular response to lithium ion"
evidence=IEP] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 InterPro:IPR021536
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533
RGD:1304639 GO:GO:0005886 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0003677 GO:GO:0008283 GO:GO:0001701 GO:GO:0051402
GO:GO:0007417 GO:GO:0043524 GO:GO:0005925 GO:GO:0010332
GO:GO:0050769 GO:GO:0033077 GO:GO:0035019 GO:GO:0045190
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000793
GO:GO:0048146 EMBL:CH473970 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0010165 GO:GO:0051276 GO:GO:0000012
GO:GO:0005958 GO:GO:0006303 GO:GO:0006289 GO:GO:0033153
GO:GO:0071285 GO:GO:0006273 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
GO:GO:0006297 KO:K10777 OMA:HMCPSTK GO:GO:0032807 CTD:3981
OrthoDB:EOG4Q58NP GO:GO:0033151 GO:GO:0051102 GO:GO:0033152
GO:GO:0002328 GeneTree:ENSGT00700000104500 IPI:IPI00202196
RefSeq:NP_001099565.1 UniGene:Rn.219326 Ensembl:ENSRNOT00000019615
GeneID:290907 KEGG:rno:290907 UCSC:RGD:1304639 NextBio:631821
Uniprot:D4A0U6
Length = 911
Score = 499 (180.7 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 146/526 (27%), Positives = 245/526 (46%)
Query: 64 AHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLII 122
A EV + I+ R+EGI++K S ++P R WLK+KPEY+ D LD+LI+
Sbjct: 408 AQTKQEVVDALNDAIDKREEGIMVKHPLSIYKPDKRGEGWLKIKPEYVTGLMDELDLLIV 467
Query: 123 XXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFR 182
++ FL A+AE P P P F + CRVG+G + +EL + KL Y++
Sbjct: 468 GGYWGKGSRGGMMSHFLCAVAETPPPGDKPSVFHTLCRVGSGYTMKELYDLGLKLAKYWK 527
Query: 183 KYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPR 242
++ +++PPS E+P+V+IE P+ S+I+ I + + S+++ +LRFPR
Sbjct: 528 PFQ--RKSPPSCILC---GTEKPEVYIE-PQNSVIVQIKA-AEIVPSDMYKTGSTLRFPR 580
Query: 243 IDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGE-KKNVS 301
I+++R DK WHDC+ + +L ++G + G DD+P++ R + KK +
Sbjct: 581 IEKIRDDKEWHDCMTLDDLEQLRGKASGKLATKHLHIG-DDDEPREKRRKPISKTKKTIG 639
Query: 302 IVPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVT 361
I+ H ++S+I +++F D+ F ++ Y L + E GG N T
Sbjct: 640 II-EHLKAPNLSNINKVSNVFEDVEFCVMSGLDGYPKPDLENKIAEFGGYIVQNPGPD-T 697
Query: 362 HCVAADNKGLKYE--AAKRRGDVIHYSWVLDCCSXXXXXXXXXXYYLHLSDSSKKKLQEE 419
+CV A ++ ++ + R DV+ W+L+C + +H+ S+K+ E
Sbjct: 698 YCVIAGSENIRVRNIISSDRHDVVKPEWLLECFKTKTCVPWQPRFMIHMCPSTKQHFARE 757
Query: 420 VDEFSDLYFWDLDLADIKQLLSNVDRSED-------PKTIDYYKKKYCPQDKWSCFHGCC 472
D + D YF D DL +K++ + SE P D + S F
Sbjct: 758 YDCYGDSYFVDADLDQLKEVFLRIKPSEQQTPEEMAPVIADLECRYSWDHSPLSMFRHYT 817
Query: 473 IYF--YHSTEPLSPDWEVXXXXXXXXXXXEISFHGGKVCNNLANA-THVVVLSVLGYDVN 529
+Y Y LS E E+ F G KV + L+ +HV++ G D
Sbjct: 818 VYLDLYAVINDLSSKIEATRLGVTAL---ELRFRGAKVVSRLSEGVSHVII----GEDQR 870
Query: 530 FNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSL 575
S ++F K KK +++ +W+ D + K + EE Y L
Sbjct: 871 RVSDFKTFRRTLK-----KKFKILQERWVIDSVDKCELQEENLYLL 911
>UNIPROTKB|F1P275 [details] [associations]
symbol:LIG4 "DNA ligase" species:9031 "Gallus gallus"
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IEA] [GO:0050769 "positive regulation of
neurogenesis" evidence=IEA] [GO:0051102 "DNA ligation involved in
DNA recombination" evidence=IEA] [GO:0051103 "DNA ligation involved
in DNA repair" evidence=IEA] [GO:0051276 "chromosome organization"
evidence=IEA] [GO:0051402 "neuron apoptotic process" evidence=IEA]
[GO:0000012 "single strand break repair" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001701 "in utero
embryonic development" evidence=IEA] [GO:0002328 "pro-B cell
differentiation" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0005925 "focal adhesion" evidence=IEA]
[GO:0005958 "DNA-dependent protein kinase-DNA ligase 4 complex"
evidence=IEA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IEA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IEA] [GO:0007417 "central
nervous system development" evidence=IEA] [GO:0008022 "protein
C-terminus binding" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0010332 "response to gamma radiation" evidence=IEA] [GO:0032807
"DNA ligase IV complex" evidence=IEA] [GO:0033077 "T cell
differentiation in thymus" evidence=IEA] [GO:0033152
"immunoglobulin V(D)J recombination" evidence=IEA] [GO:0033153 "T
cell receptor V(D)J recombination" evidence=IEA] [GO:0035019
"somatic stem cell maintenance" evidence=IEA] [GO:0043524 "negative
regulation of neuron apoptotic process" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0048146 "positive regulation
of fibroblast proliferation" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 InterPro:IPR021536 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333 PROSITE:PS00697
PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005886
GO:GO:0005524 GO:GO:0005737 GO:GO:0003677 GO:GO:0008283
GO:GO:0006260 GO:GO:0051402 GO:GO:0043524 GO:GO:0005925
GO:GO:0010332 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0000793 GO:GO:0048146 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0010165 GO:GO:0051276 GO:GO:0000012
GO:GO:0005958 GO:GO:0006303 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
GO:GO:0006297 OMA:HMCPSTK GO:GO:0032807 IPI:IPI00651271
GO:GO:0051102 GeneTree:ENSGT00700000104500 EMBL:AADN02029083
Ensembl:ENSGALT00000027230 Uniprot:F1P275
Length = 912
Score = 497 (180.0 bits), Expect = 6.0e-45, P = 6.0e-45
Identities = 143/512 (27%), Positives = 242/512 (47%)
Query: 69 EVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIXXXXX 127
EV E I+NR+EGI++KD S ++P R WLK+KPEY+ D LD+LI+
Sbjct: 418 EVIDALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWG 477
Query: 128 XXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYP 187
++ FL A+AE PAP+ P F S CRVG+G + +EL + KL +++ Y
Sbjct: 478 KGSRGGMMSHFLCAIAETPAPNEKPTVFHSICRVGSGYTMKELYDLGLKLAKHWKPYN-- 535
Query: 188 KRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVR 247
++ PP + + E+P+++IE P S+I+ I + + S+++ +LRFPRI+++R
Sbjct: 536 RKDPPC--NILCGT-EKPEMYIE-PCNSVIVQIKA-AEIVNSDMYKTDCTLRFPRIEKIR 590
Query: 248 YDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHF 307
DK W++C+ + L + G Y D+ ++ R + KK + I F
Sbjct: 591 EDKEWYECMTLDMLEHLRSRAEGKLASKHLYIDEYDEPQEKKRRTVPKVKKVIGIA-EQF 649
Query: 308 LQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCV--A 365
D+S++ +S+F D+ F + YS L + E GG+ N T+CV
Sbjct: 650 KAPDLSNVNKVSSMFEDVEFCVMTGMGRYSKSELESRIAECGGSVVQNPGPD-TYCVIVG 708
Query: 366 ADNKGLKYEAAKRRGDVIHYSWVLDCCSXXXXXXXXXXYYLHLSDSSKKKLQEEVDEFSD 425
A+N +K A + DV+ W+L C + +H+S +++ E D + D
Sbjct: 709 AENVRVKNIIASNKYDVVKAEWLLQCFQSKMLVPWQPAFMIHMSPETREHFAREYDCYGD 768
Query: 426 LYFWDLDLADIKQLLSNV-DRSEDP-KTIDYYKKKYCPQDKWSC-FHGCCIYFYHSTEPL 482
Y D D+A +K++ S V D + P I +++Y C F G IY +
Sbjct: 769 SYTADTDVAQLKEVFSRVKDNKKMPLDLIAELEERYSWNSCKLCIFRGNTIYVDYYAIIN 828
Query: 483 SPDWEVXXXXXXXXXXXEISFHGGKVCNNLANA-THVVVLSVLGYDVNFNSLTESFTARE 541
P ++ E+ F+G KV L +HVV+ G D +S + A
Sbjct: 829 KPSTKIHGTRLSIRAL-ELRFYGAKVVPLLEEGVSHVVI----GED---HSRVKEMKALR 880
Query: 542 KHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEY 573
+ ++ KK +V W+ + + + E ++
Sbjct: 881 R--MFGKKFKIVSELWVTESVKEGVPKNETQF 910
>UNIPROTKB|Q90YB1 [details] [associations]
symbol:LIG4 "DNA ligase 4" species:9031 "Gallus gallus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006289 "nucleotide-excision repair" evidence=IBA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IBA;TAS] [GO:0032807 "DNA ligase IV complex" evidence=IBA]
[GO:0033151 "V(D)J recombination" evidence=IBA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006302 "double-strand break repair" evidence=TAS] [GO:0070419
"nonhomologous end joining complex" evidence=ISS]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 InterPro:IPR021536
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005524 GO:GO:0005694 GO:GO:0005654 GO:GO:0051301
GO:GO:0046872 GO:GO:0003677 GO:GO:0007049 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0006303 GO:GO:0006289 Reactome:REACT_115612
GO:GO:0006273 eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574 KO:K10777
GO:GO:0032807 EMBL:AB058600 EMBL:AJ720061 IPI:IPI00651271
RefSeq:NP_001025987.1 UniGene:Gga.1352 ProteinModelPortal:Q90YB1
SMR:Q90YB1 STRING:Q90YB1 PRIDE:Q90YB1 GeneID:418764 KEGG:gga:418764
CTD:3981 HOGENOM:HOG000007831 HOVERGEN:HBG005516 InParanoid:Q90YB1
OrthoDB:EOG4Q58NP NextBio:20821908 GO:GO:0070419 GO:GO:0033151
Uniprot:Q90YB1
Length = 912
Score = 496 (179.7 bits), Expect = 7.9e-45, P = 7.9e-45
Identities = 143/512 (27%), Positives = 242/512 (47%)
Query: 69 EVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIXXXXX 127
EV E I+NR+EGI++KD S ++P R WLK+KPEY+ D LD+LI+
Sbjct: 418 EVIDALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWG 477
Query: 128 XXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYP 187
++ FL A+AE PAP+ P F S CRVG+G + +EL + KL +++ Y
Sbjct: 478 KGSRGGMMSHFLCAVAETPAPNEKPTVFHSICRVGSGYTMKELYDLGLKLAKHWKPYN-- 535
Query: 188 KRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVR 247
++ PP + + E+P+++IE P S+I+ I + + S+++ +LRFPRI+++R
Sbjct: 536 RKDPPC--NILCGT-EKPEMYIE-PCNSVIVQIKA-AEIVNSDMYKTDCTLRFPRIEKIR 590
Query: 248 YDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHF 307
DK W++C+ + L + G Y D+ ++ R + KK + I F
Sbjct: 591 EDKEWYECMTLDMLEHLRSRAEGKLASKHLYIDEYDEPQEKKRRTVPKVKKVIGIA-EQF 649
Query: 308 LQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCV--A 365
D+S++ +S+F D+ F + YS L + E GG+ N T+CV
Sbjct: 650 KAPDLSNVNKVSSMFEDVEFCVMTGMGRYSKSELESRIAECGGSVVQNPGPD-TYCVIVG 708
Query: 366 ADNKGLKYEAAKRRGDVIHYSWVLDCCSXXXXXXXXXXYYLHLSDSSKKKLQEEVDEFSD 425
A+N +K A + DV+ W+L C + +H+S +++ E D + D
Sbjct: 709 AENVRVKNIIASNKYDVVKAEWLLQCFQSKMLVPWQPAFMIHMSPETREHFAREYDCYGD 768
Query: 426 LYFWDLDLADIKQLLSNV-DRSEDP-KTIDYYKKKYCPQDKWSC-FHGCCIYFYHSTEPL 482
Y D D+A +K++ S V D + P I +++Y C F G IY +
Sbjct: 769 SYTADTDVAQLKEVFSRVKDNKKMPLDLIAELEERYSWNSCKLCIFRGNTIYVDYYAIIN 828
Query: 483 SPDWEVXXXXXXXXXXXEISFHGGKVCNNLANA-THVVVLSVLGYDVNFNSLTESFTARE 541
P ++ E+ F+G KV L +HVV+ G D +S + A
Sbjct: 829 KPSTKIHGTRLSIRAL-ELRFYGAKVVPLLEEGVSHVVI----GED---HSRVKEMKALR 880
Query: 542 KHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEY 573
+ ++ KK +V W+ + + + E ++
Sbjct: 881 R--MFGKKFKIVSELWVTESVKEGVPKNETQF 910
>UNIPROTKB|F1MB07 [details] [associations]
symbol:LIG4 "DNA ligase" species:9913 "Bos taurus"
[GO:0051402 "neuron apoptotic process" evidence=IEA] [GO:0051276
"chromosome organization" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] [GO:0051102 "DNA ligation
involved in DNA recombination" evidence=IEA] [GO:0050769 "positive
regulation of neurogenesis" evidence=IEA] [GO:0048146 "positive
regulation of fibroblast proliferation" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0043524 "negative regulation
of neuron apoptotic process" evidence=IEA] [GO:0035019 "somatic
stem cell maintenance" evidence=IEA] [GO:0033153 "T cell receptor
V(D)J recombination" evidence=IEA] [GO:0033152 "immunoglobulin
V(D)J recombination" evidence=IEA] [GO:0033077 "T cell
differentiation in thymus" evidence=IEA] [GO:0032807 "DNA ligase IV
complex" evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0008283 "cell proliferation" evidence=IEA] [GO:0008022 "protein
C-terminus binding" evidence=IEA] [GO:0007417 "central nervous
system development" evidence=IEA] [GO:0006303 "double-strand break
repair via nonhomologous end joining" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
[GO:0005958 "DNA-dependent protein kinase-DNA ligase 4 complex"
evidence=IEA] [GO:0005925 "focal adhesion" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0002328 "pro-B cell
differentiation" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000012 "single strand break repair"
evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 InterPro:IPR021536 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333 PROSITE:PS00697
PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005886
GO:GO:0005524 GO:GO:0005737 GO:GO:0003677 GO:GO:0008283
GO:GO:0006260 GO:GO:0001701 GO:GO:0051402 GO:GO:0007417
GO:GO:0043524 GO:GO:0005925 GO:GO:0010332 GO:GO:0050769
GO:GO:0033077 GO:GO:0035019 GO:GO:0045190 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000793 GO:GO:0048146
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0010165
GO:GO:0051276 GO:GO:0000012 GO:GO:0005958 GO:GO:0006303
GO:GO:0033153 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 GO:GO:0006297 KO:K10777
OMA:HMCPSTK GO:GO:0032807 CTD:3981 GO:GO:0051102 GO:GO:0033152
GO:GO:0002328 GeneTree:ENSGT00700000104500 EMBL:DAAA02034872
IPI:IPI00716207 RefSeq:NP_001178055.1 UniGene:Bt.7959
ProteinModelPortal:F1MB07 PRIDE:F1MB07 Ensembl:ENSBTAT00000021092
GeneID:781252 KEGG:bta:781252 NextBio:20924713 Uniprot:F1MB07
Length = 911
Score = 472 (171.2 bits), Expect = 5.0e-42, P = 5.0e-42
Identities = 137/524 (26%), Positives = 246/524 (46%)
Query: 64 AHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLII 122
AH EV E I+ R+EGI++K S ++P R WLK+KPEY+ D LD+LII
Sbjct: 408 AHTKKEVIDALNEAIDKREEGIMVKHPLSIYKPDKRGEGWLKIKPEYVNGLMDELDILII 467
Query: 123 XXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFR 182
++ FL A++E+P P F + CRVG+G + +EL + KL +++
Sbjct: 468 GGYWGKGARGGMMSHFLCAVSEKPPSGEKPSVFHTLCRVGSGYTMKELYDLGLKLAKHWK 527
Query: 183 KYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPR 242
+ ++APPS + + E+P+V+IE P S+I+ + + + S+++ +LRFPR
Sbjct: 528 PFH--RKAPPS--NILCGT-EKPEVYIE-PCNSVIVQVKAT-EIVPSDMYKTGCTLRFPR 580
Query: 243 IDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEY-GGLQDDKPKQFRSSRKGEKKNVS 301
I+++R DK W++C ++ +L + G Y GG DD+P++ + + K V
Sbjct: 581 IEKIREDKEWYECTSLEDLEQLRGKACGKLASRHLYLGG--DDEPQEKKRKAAPKMKKVI 638
Query: 302 IVPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVT 361
+ H ++S++ +++F D+ F ++ ++ L + E GG N T
Sbjct: 639 GIIEHLKAPNLSNVNRVSTVFEDVEFCVMSGTSSHPKPDLENRIAELGGYIVQNPGPD-T 697
Query: 362 HCVAADNKGLKYE--AAKRRGDVIHYSWVLDCCSXXXXXXXXXXYYLHLSDSSKKKLQEE 419
+CV A ++ ++ + + + DV+ W+L+C + +H+ S+K+ +E
Sbjct: 698 YCVIAGSENIRVKNIISSDKHDVVKPEWLLECFRTRSCVPWQPRFMIHMCPSTKQHFAQE 757
Query: 420 VDEFSDLYFWDLDLADIKQLLSNVDRSED-------PKTIDYYKKKYCPQDKWSCFHGCC 472
D++ D YF D DL +K++ + + + P D + S F
Sbjct: 758 YDQYGDSYFVDTDLHQLKEVFLGIKNAGEQTPGEMSPVIADLEHRYSWASAPLSMFRHLT 817
Query: 473 IYF--YHSTEPLSPDWEVXXXXXXXXXXXEISFHGGKVCNNLANA-THVVVLSVLGYDVN 529
+Y Y LS + E+ FHG +V + LA +HV+V G D
Sbjct: 818 VYLDLYAVINDLSTRIK---GARLAITALELRFHGAQVVSCLAEGVSHVIV----GED-- 868
Query: 530 FNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEY 573
S A + L +K +++ +W+ + K + EE Y
Sbjct: 869 -QSRVADLKAIRRTL--KRKFKILQERWVTVSIDKCELQEENRY 909
>UNIPROTKB|F1RLP1 [details] [associations]
symbol:LIG4 "DNA ligase" species:9823 "Sus scrofa"
[GO:0051402 "neuron apoptotic process" evidence=IEA] [GO:0051276
"chromosome organization" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] [GO:0051102 "DNA ligation
involved in DNA recombination" evidence=IEA] [GO:0050769 "positive
regulation of neurogenesis" evidence=IEA] [GO:0048146 "positive
regulation of fibroblast proliferation" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0043524 "negative regulation
of neuron apoptotic process" evidence=IEA] [GO:0035019 "somatic
stem cell maintenance" evidence=IEA] [GO:0033153 "T cell receptor
V(D)J recombination" evidence=IEA] [GO:0033152 "immunoglobulin
V(D)J recombination" evidence=IEA] [GO:0033077 "T cell
differentiation in thymus" evidence=IEA] [GO:0032807 "DNA ligase IV
complex" evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0008283 "cell proliferation" evidence=IEA] [GO:0008022 "protein
C-terminus binding" evidence=IEA] [GO:0007417 "central nervous
system development" evidence=IEA] [GO:0006303 "double-strand break
repair via nonhomologous end joining" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
[GO:0005958 "DNA-dependent protein kinase-DNA ligase 4 complex"
evidence=IEA] [GO:0005925 "focal adhesion" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0002328 "pro-B cell
differentiation" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000012 "single strand break repair"
evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 InterPro:IPR021536 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 Pfam:PF11411 PROSITE:PS00333 PROSITE:PS00697
PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005886
GO:GO:0005524 GO:GO:0005737 GO:GO:0003677 GO:GO:0008283
GO:GO:0006260 GO:GO:0001701 GO:GO:0051402 GO:GO:0007417
GO:GO:0043524 GO:GO:0005925 GO:GO:0010332 GO:GO:0050769
GO:GO:0033077 GO:GO:0035019 GO:GO:0045190 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000793 GO:GO:0048146
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0010165
GO:GO:0051276 GO:GO:0000012 GO:GO:0005958 GO:GO:0006303
GO:GO:0033153 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 GO:GO:0006297 KO:K10777
OMA:HMCPSTK GO:GO:0032807 GO:GO:0051102 GO:GO:0033152 GO:GO:0002328
GeneTree:ENSGT00700000104500 EMBL:CU019584 RefSeq:XP_003131137.2
ProteinModelPortal:F1RLP1 Ensembl:ENSSSCT00000010458
GeneID:100155891 KEGG:ssc:100155891 Uniprot:F1RLP1
Length = 910
Score = 458 (166.3 bits), Expect = 2.0e-40, P = 2.0e-40
Identities = 134/521 (25%), Positives = 243/521 (46%)
Query: 64 AHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLII 122
AH EV E I+ R+EGI++K S ++P R WLK+KPEY+ D LD+LI+
Sbjct: 408 AHTKKEVIDALNEAIDKREEGIMIKYPLSIYKPDKRGEGWLKIKPEYVNGLMDELDILIV 467
Query: 123 XXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFR 182
++ FL A+AE+P P F + CRVG+G + +EL + KL +++
Sbjct: 468 GGYWGKGARGGMMSHFLCAVAEKPPAGEKPSVFHTLCRVGSGYTMKELYDLGLKLAKHWK 527
Query: 183 KYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPR 242
+ ++APP E+P+V+IE P S+I+ + + + S+++ +LRFPR
Sbjct: 528 PFH--RKAPPGSILC---GTEKPEVYIE-PCNSVIVQVKA-AEIVPSDMYKTGCTLRFPR 580
Query: 243 IDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSI 302
I+++R DK WH+C + L + G Y G ++ + K+ +++ K KK + I
Sbjct: 581 IEKIREDKEWHECTTLDDLEHLRGKAAGKLASKHLYVGDEEPQEKKRKAAPKA-KKVIGI 639
Query: 303 VPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTH 362
+ H ++S+I +++F D+ F + ++ L + E GG N T+
Sbjct: 640 I-EHLKAPNLSNINKVSNMFEDVEFCVMTGSDSHPKPDLESRIAEFGGYIVQNPGPD-TY 697
Query: 363 CVAADNKGLKYE--AAKRRGDVIHYSWVLDCCSXXXXXXXXXXYYLHLSDSSKKKLQEEV 420
CV A ++ ++ + + DV+ W+L+C + +H+ S+K+ +
Sbjct: 698 CVIAGSENIRVRNIISSNKHDVVKPEWLLECFRTQRCAPWQPRFMVHMCPSTKQHFARQY 757
Query: 421 DEFSDLYFWDLDLADIKQLLSNVDR--SEDPK----TIDYYKKKYC-PQDKWSCFHGCCI 473
D D YF D D+ +K++ S + + P+ I + +Y + S F +
Sbjct: 758 DCHGDSYFVDTDVNQLKEVFSGIKTPGEQTPREMAPVIADLEHRYAWDRAPLSMFRPHTV 817
Query: 474 YFYHSTEPLSPDWEVXXXXXXXXXXXEISFHGGKVCNNLANA-THVVVLSVLGYDVNFNS 532
Y P ++ E+ FHG +V ++LA +HV++ G D +S
Sbjct: 818 YPDLYAVINDPSTKIEGTRLAITAL-ELQFHGAEVVSHLAEGVSHVII----GED---HS 869
Query: 533 LTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEY 573
A + L +K ++ +W + + K + EE +Y
Sbjct: 870 RLADLKAFRRTL--KRKFKILPERWAIESIDKCELQEENQY 908
>UNIPROTKB|Q23RI5 [details] [associations]
symbol:TTHERM_00387050 "DNA ligase" species:312017
"Tetrahymena thermophila SB210" [GO:0003910 "DNA ligase (ATP)
activity" evidence=IBA] [GO:0005694 "chromosome" evidence=IBA]
[GO:0006266 "DNA ligation" evidence=IBA] [GO:0006273 "lagging
strand elongation" evidence=IBA] [GO:0006289 "nucleotide-excision
repair" evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IBA] [GO:0032807 "DNA ligase IV
complex" evidence=IBA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
InterPro:IPR021536 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
Pfam:PF11411 PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357
GO:GO:0005524 GO:GO:0005694 GO:GO:0003677 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0006303 GO:GO:0006289
GO:GO:0006273 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 KO:K10777 GO:GO:0032807
EMBL:GG662644 RefSeq:XP_001019308.1 UniGene:Tth.9167
ProteinModelPortal:Q23RI5 EnsemblProtists:EAR99063 GeneID:7825974
KEGG:tet:TTHERM_00387050 ProtClustDB:CLSZ2445781 Uniprot:Q23RI5
Length = 1026
Score = 268 (99.4 bits), Expect = 3.1e-31, Sum P(4) = 3.1e-31
Identities = 67/247 (27%), Positives = 118/247 (47%)
Query: 66 NVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIXX 124
+++++ F E I DEGIV+K L + + P DRS KW+K+K +Y D LD+++I
Sbjct: 490 DINDILTEFNEAIHRNDEGIVIKQLDTLYYPDDRSDKWIKMKGDYYEGIIDTLDLIVIGG 549
Query: 125 XXXXXXX--------XXEVAQFLVALAER-PAPDTYPRRFISFCRVGTGLSDEELDAVVT 175
+ +LVA+A++ + + F +VG G + + +
Sbjct: 550 YFGEKSYKINGIGDWTDHITHYLVAVAKKIDLQNPSNSILVPFAKVGAGFTARDYADIKA 609
Query: 176 KLKPYFRKYEYPKRAPPSFYQVTN-NSKERPDVWIESPEKSIILSITSDIRTIRSEVFSA 234
+++ + + + + P Q K++PD +I SP+ S+IL I + I+S +
Sbjct: 610 RMRDQWVRTNHSNKTPSFIIQNWKPGEKDKPDAYILSPQNSLILEIRAT-EIIQSSQYPT 668
Query: 235 PYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQK--GKEYGGL---QDDKPKQF 289
Y+LRFPR ++ R DK W DC+ +E+ + QK KE QD+ +
Sbjct: 669 NYTLRFPRFEKFRRDKDWFDCMKFNEIIEMTQNLKKKEQKESDKEDNASDEEQDENGGKL 728
Query: 290 RSSRKGE 296
+ RKG+
Sbjct: 729 KKKRKGQ 735
Score = 173 (66.0 bits), Expect = 3.1e-31, Sum P(4) = 3.1e-31
Identities = 54/200 (27%), Positives = 96/200 (48%)
Query: 269 NGTTQKGKEYGGLQDDKPK-----QFRSSRKGEKKN--VSIVPSHFLQTDVSDIKGETSI 321
N + ++ E GG K K + +R+G K N + V + +L DVSD+K E++I
Sbjct: 715 NASDEEQDENGGKLKKKRKGQNGEEIEVNRQGRKPNWKTNKVMAQYLDIDVSDVKVESNI 774
Query: 322 FSDMVFYFVNVPPAYSLDS---------LHKMVVENGGTFSMNLNNSVTHCVAA--DNKG 370
F++ VF +N+P SL + K +V NGG N +N VTH +A+ D K
Sbjct: 775 FNNFVFNIINLPHEVSLSEEKILLEKAQIEKGIVANGGKKVQNDSNLVTHYIASHYDFK- 833
Query: 371 LKYEAAKRRGDVIHYSWVLDCCSXXXXXXXXXXYYLHLSDSSKKKLQEEVDEFSDLYFWD 430
++ + +V+ WV DC Y ++ D ++ + D++ D Y+ D
Sbjct: 834 VQVIGDHYKVNVLSLQWVKDCIKKKTLLDYSPRYIIYGQDQLLERNKLLYDQYGDSYYKD 893
Query: 431 LDLADIKQLLSN--VDRSED 448
+D ++ +L + +D+ E+
Sbjct: 894 VDEDELLDILKSMKIDQIEE 913
Score = 49 (22.3 bits), Expect = 1.3e-18, Sum P(4) = 1.3e-18
Identities = 7/17 (41%), Positives = 14/17 (82%)
Query: 549 KLHVVRSQWLEDCLAKE 565
K++V+ QW++DC+ K+
Sbjct: 842 KVNVLSLQWVKDCIKKK 858
Score = 42 (19.8 bits), Expect = 3.1e-31, Sum P(4) = 3.1e-31
Identities = 13/63 (20%), Positives = 32/63 (50%)
Query: 26 TVAM---NDGICVCVHVYMLSQLRSQIMAADQTGEPCWSLVAHNVDEVEKFFKETIENRD 82
TVAM +D +C+C ++ + L+++ E ++L + + +K + I+N+
Sbjct: 425 TVAMEREDDELCICYKIFDILYLKTK-----DNKE--YALTEYTLQYRKKILENLIDNQQ 477
Query: 83 EGI 85
+ +
Sbjct: 478 DRV 480
Score = 37 (18.1 bits), Expect = 3.1e-31, Sum P(4) = 3.1e-31
Identities = 7/27 (25%), Positives = 18/27 (66%)
Query: 550 LHVVRSQWLEDCLAKEQKSEEYEYSLK 576
L +++S ++ + Q++EE+E ++K
Sbjct: 900 LDILKSMKIDQIEEEFQENEEFEEAVK 926
Score = 37 (18.1 bits), Expect = 3.1e-31, Sum P(4) = 3.1e-31
Identities = 17/81 (20%), Positives = 34/81 (41%)
Query: 701 MDDEENLETRQTNVVEDLESLDRGKALQQEVVKDFGKEKQTVRAPDIEMRERYHSKDSET 760
+D++E L+ ++ ++ +E + +E VKD K + + Y ++
Sbjct: 894 VDEDELLDILKSMKIDQIEEEFQENEEFEEAVKDIISMKNQLFKECFPQGQTYCFYNAN- 952
Query: 761 TDKQQVDAVQAMLLDMIPSLG 781
DK D L+D+I G
Sbjct: 953 -DKLNSDIDLRYLVDLIQFSG 972
>ASPGD|ASPL0000057134 [details] [associations]
symbol:AN0097 species:162425 "Emericella nidulans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006303 "double-strand
break repair via nonhomologous end joining" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005524 GO:GO:0005694 EMBL:BN001308 GO:GO:0046872
GO:GO:0003677 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
EMBL:AACD01000003 GO:GO:0006303 GO:GO:0006289 GO:GO:0006273
eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103 TIGRFAMs:TIGR00574
KO:K10777 OMA:HMCPSTK GO:GO:0032807 OrthoDB:EOG41K2MD
RefSeq:XP_657701.1 ProteinModelPortal:Q5BH83 STRING:Q5BH83
EnsemblFungi:CADANIAT00002653 GeneID:2875873 KEGG:ani:AN0097.2
HOGENOM:HOG000176213 Uniprot:Q5BH83
Length = 1009
Score = 354 (129.7 bits), Expect = 9.4e-31, Sum P(2) = 9.4e-31
Identities = 109/404 (26%), Positives = 194/404 (48%)
Query: 69 EVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLIIXXXXX 127
EVE ++ + EG+VLK+ S + +R W+K+KPEY+ G LD+++I
Sbjct: 470 EVEASLRKAVAEASEGLVLKNPRSPYRLNERHDDWMKVKPEYMTEFGESLDLVVIGGYYG 529
Query: 128 XXXXXXEVAQFLVALAE---RPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKY 184
+++ FL L + + + P + SFC+VG G + + + + ++
Sbjct: 530 SGHRGGKLSSFLCGLRVDEGQSSQGSNPTKCYSFCKVGGGFTAADYANIRHHTDGKWVEW 589
Query: 185 EYPKRAPPSFYQVTNNSK--ERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPR 242
PK+ P ++ ++ ERPD+WI+ PE S+++ + + ++ S+ F +LRFPR
Sbjct: 590 N-PKKPPTTYIELAGGDSQYERPDMWIK-PEDSVVICVKAASVSV-SDQFRIGLTLRFPR 646
Query: 243 IDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSI 302
R+R DK W L VQ F++L S + KE+ +++ + K+ + K KK ++I
Sbjct: 647 FKRLRMDKDWKSALSVQEFLDL-KSHAEQEHREKEFN-VENFRKKRVK---KTTKKPLAI 701
Query: 303 VPSHFLQTDVSDIKGETSIFSDMVFYFV---NVPPAYSLDSLHKMVVENGGTFSMNLNNS 359
+ +V IF + F+ + N P S L +V NGG N++
Sbjct: 702 A-GYDENAEVQYAGPSGHIFDGLNFFILTDSNAPVKKSKAELENLVKANGGRI-FQTNDA 759
Query: 360 V--THCVAADNKGLKYEAAKRRGDV--IHYSWVLDCCSXXXXXXXXXXYYLHLSDSSK-- 413
V T C+A D + +K + +++GD+ I SW+LDC L L
Sbjct: 760 VPDTICIA-DRRTVKAASLQKKGDIDIIRPSWILDCIKQSEIDAGLPDLLLPLEPGHMFF 818
Query: 414 -KKLQEEV-----DEFSDLYFWDLDLADIKQLLSNVDRSEDPKT 451
K +EE+ D+F+D Y D+ + +++ LL + ++D KT
Sbjct: 819 MTKDKEEIVAGSLDQFNDSYARDITVEELRNLLDQM--AKDGKT 860
Score = 68 (29.0 bits), Expect = 9.4e-31, Sum P(2) = 9.4e-31
Identities = 40/173 (23%), Positives = 70/173 (40%)
Query: 420 VDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCP------QDK----WS--C 467
+D+F+D Y D+ + +++ LL + ++D KT + + Q+K W+ C
Sbjct: 831 LDQFNDSYARDITVEELRNLLDQM--AKDGKTDSFCSPEAIQKVTEHIQEKVDSGWTMPC 888
Query: 468 ---FHGCCIYF-YHSTEPLSPDWEVXXXXXXXXXXXEISFHGGKVCNNLANA--THVVVL 521
F G + F + + S E F G V +L + THVVV
Sbjct: 889 GWLFKGLVLCFPENENDSASEGPEPKQSQRIHLAQNTAKFAGASVTTSLKDTSITHVVV- 947
Query: 522 SVLGYDVNFNSLTESFTAREKHLLWNKKL-HVVRSQWLEDCLAKEQKSEEYEY 573
D +F S + L +KL H+V+ W+ED + +E ++
Sbjct: 948 -----DPDFTS--SELPKLRRTLSTRRKLPHIVKVNWIEDSWKENTLLDEEQH 993
>UNIPROTKB|Q5BH83 [details] [associations]
symbol:lig4 "DNA ligase 4" species:227321 "Aspergillus
nidulans FGSC A4" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006266
"DNA ligation" evidence=IBA] [GO:0006273 "lagging strand
elongation" evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IBA] [GO:0032807 "DNA ligase IV
complex" evidence=IBA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00697
PROSITE:PS50160 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524
GO:GO:0005694 EMBL:BN001308 GO:GO:0046872 GO:GO:0003677
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 EMBL:AACD01000003
GO:GO:0006303 GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793
GO:GO:0003910 GO:GO:0051103 TIGRFAMs:TIGR00574 KO:K10777
OMA:HMCPSTK GO:GO:0032807 OrthoDB:EOG41K2MD RefSeq:XP_657701.1
ProteinModelPortal:Q5BH83 STRING:Q5BH83
EnsemblFungi:CADANIAT00002653 GeneID:2875873 KEGG:ani:AN0097.2
HOGENOM:HOG000176213 Uniprot:Q5BH83
Length = 1009
Score = 354 (129.7 bits), Expect = 9.4e-31, Sum P(2) = 9.4e-31
Identities = 109/404 (26%), Positives = 194/404 (48%)
Query: 69 EVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLIIXXXXX 127
EVE ++ + EG+VLK+ S + +R W+K+KPEY+ G LD+++I
Sbjct: 470 EVEASLRKAVAEASEGLVLKNPRSPYRLNERHDDWMKVKPEYMTEFGESLDLVVIGGYYG 529
Query: 128 XXXXXXEVAQFLVALAE---RPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKY 184
+++ FL L + + + P + SFC+VG G + + + + ++
Sbjct: 530 SGHRGGKLSSFLCGLRVDEGQSSQGSNPTKCYSFCKVGGGFTAADYANIRHHTDGKWVEW 589
Query: 185 EYPKRAPPSFYQVTNNSK--ERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPR 242
PK+ P ++ ++ ERPD+WI+ PE S+++ + + ++ S+ F +LRFPR
Sbjct: 590 N-PKKPPTTYIELAGGDSQYERPDMWIK-PEDSVVICVKAASVSV-SDQFRIGLTLRFPR 646
Query: 243 IDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSI 302
R+R DK W L VQ F++L S + KE+ +++ + K+ + K KK ++I
Sbjct: 647 FKRLRMDKDWKSALSVQEFLDL-KSHAEQEHREKEFN-VENFRKKRVK---KTTKKPLAI 701
Query: 303 VPSHFLQTDVSDIKGETSIFSDMVFYFV---NVPPAYSLDSLHKMVVENGGTFSMNLNNS 359
+ +V IF + F+ + N P S L +V NGG N++
Sbjct: 702 A-GYDENAEVQYAGPSGHIFDGLNFFILTDSNAPVKKSKAELENLVKANGGRI-FQTNDA 759
Query: 360 V--THCVAADNKGLKYEAAKRRGDV--IHYSWVLDCCSXXXXXXXXXXYYLHLSDSSK-- 413
V T C+A D + +K + +++GD+ I SW+LDC L L
Sbjct: 760 VPDTICIA-DRRTVKAASLQKKGDIDIIRPSWILDCIKQSEIDAGLPDLLLPLEPGHMFF 818
Query: 414 -KKLQEEV-----DEFSDLYFWDLDLADIKQLLSNVDRSEDPKT 451
K +EE+ D+F+D Y D+ + +++ LL + ++D KT
Sbjct: 819 MTKDKEEIVAGSLDQFNDSYARDITVEELRNLLDQM--AKDGKT 860
Score = 68 (29.0 bits), Expect = 9.4e-31, Sum P(2) = 9.4e-31
Identities = 40/173 (23%), Positives = 70/173 (40%)
Query: 420 VDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCP------QDK----WS--C 467
+D+F+D Y D+ + +++ LL + ++D KT + + Q+K W+ C
Sbjct: 831 LDQFNDSYARDITVEELRNLLDQM--AKDGKTDSFCSPEAIQKVTEHIQEKVDSGWTMPC 888
Query: 468 ---FHGCCIYF-YHSTEPLSPDWEVXXXXXXXXXXXEISFHGGKVCNNLANA--THVVVL 521
F G + F + + S E F G V +L + THVVV
Sbjct: 889 GWLFKGLVLCFPENENDSASEGPEPKQSQRIHLAQNTAKFAGASVTTSLKDTSITHVVV- 947
Query: 522 SVLGYDVNFNSLTESFTAREKHLLWNKKL-HVVRSQWLEDCLAKEQKSEEYEY 573
D +F S + L +KL H+V+ W+ED + +E ++
Sbjct: 948 -----DPDFTS--SELPKLRRTLSTRRKLPHIVKVNWIEDSWKENTLLDEEQH 993
>DICTYBASE|DDB_G0292760 [details] [associations]
symbol:lig4 "BRCT domain-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0005958 "DNA-dependent
protein kinase-DNA ligase 4 complex" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA;ISS] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA;ISS;IBA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0000012 "single strand break repair" evidence=ISS] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0032807 "DNA ligase IV
complex" evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] [GO:0006273 "lagging
strand elongation" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016874 "ligase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR021536 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 Pfam:PF11411 PROSITE:PS50160 InterPro:IPR001357
dictyBase:DDB_G0292760 Pfam:PF00533 GO:GO:0005524 GO:GO:0005694
GenomeReviews:CM000155_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0000012 GO:GO:0005958
GO:GO:0006303 GO:GO:0006289 EMBL:AAFI02000196 GO:GO:0006273
eggNOG:COG1793 GO:GO:0003910 Gene3D:1.10.3260.10 TIGRFAMs:TIGR00574
KO:K10777 OMA:HMCPSTK GO:GO:0032807 HSSP:Q08387 RefSeq:XP_629472.1
ProteinModelPortal:Q54CR9 EnsemblProtists:DDB0232255 GeneID:8628862
KEGG:ddi:DDB_G0292760 ProtClustDB:CLSZ2728715 Uniprot:Q54CR9
Length = 1088
Score = 343 (125.8 bits), Expect = 1.6e-27, P = 1.6e-27
Identities = 100/388 (25%), Positives = 178/388 (45%)
Query: 155 FISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEK 214
F SFC+VG+G +D +L ++ L P++ + K PPS Q+ KE+PDVWI+
Sbjct: 662 FYSFCKVGSGYTDIQLKSLQKDLDPHWNNFSTSK--PPSIIQLAEPFKEKPDVWIDPRVY 719
Query: 215 SIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELV--HSSNGTT 272
S +L I + + + ++ + Y+LRFPR+ ++R DK W DC + ++L +S+N
Sbjct: 720 SKVLQIKAS-QIVVTDKYKCGYTLRFPRVLKIRDDKGWKDCCSHEEIIDLFTNYSTNLNF 778
Query: 273 QKGKEYGGLQDDKPKQFRSSRKGEKKNVSI----VPSHFLQTDVSDIKGETSIFSDMVFY 328
++ EYG K K+ + S+K + ++ V S F TD S I +IF +
Sbjct: 779 KRDHEYGDGSGGKNKKLKKSKKTTNQLLADSGLKVLSIFQDTDTSGIIPTQNIFQGIEIC 838
Query: 329 FVNVPPA-YSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG--DVIHY 385
+ Y+ L M+VE GG+ + + T+ V + + +K + + G D++ +
Sbjct: 839 VIKGSSGEYTKSKLEIMIVEMGGS-KVQYPSRNTNYVISSKEVVKIQNLIQSGFIDIVSF 897
Query: 386 SWVLDCCSXXXXXXXXXXYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDR 445
+W++DC + Y + ++S+KK+ + D+F D Y + +K + +D+
Sbjct: 898 NWIVDCYNEKRLVPLGPKYMIFSTESTKKRFLLDSDQFGDSYINETTEQSLKDSFNQIDK 957
Query: 446 SEDPKTIDYYK---------KKYCPQDKWSCFHGCCIYFYHSTEPLSPDWEVXXXXXXXX 496
+ K + KY WS F Y + + +
Sbjct: 958 LKLKKQLSINSTTTTTTTSISKYFSNCWWSLFKEFTFYL-DLYQVVGEKSTLIENNNLEL 1016
Query: 497 XXXEISFHGGKVCNNLANA-THVVVLSV 523
I F+GGK+ N THVV+ S+
Sbjct: 1017 SNLNIQFYGGKISIEFNNKITHVVLDSL 1044
Score = 324 (119.1 bits), Expect = 1.9e-25, P = 1.9e-25
Identities = 76/248 (30%), Positives = 133/248 (53%)
Query: 65 HNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYI----RAGSDLDVL 120
+++ ++ + I NR+EG++LK+L S + P +R KW+K+KPEYI DLD++
Sbjct: 556 NSISQIISLLESAIINREEGLMLKNLHSLYVPAERKDKWVKIKPEYIDGMGNGADDLDLV 615
Query: 121 IIXXXXXXXXXXX--EVAQFLVA---LAERPAPD-----TYPRR--FISFCRVGTGLSDE 168
II ++ F++ +A+ D T+ + F SFC+VG+G +D
Sbjct: 616 IIGGYYGSGLNRRGGTISHFMLGVPFIADSTDTDIDDESTFDKNVIFYSFCKVGSGYTDI 675
Query: 169 ELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIR 228
+L ++ L P++ + K PPS Q+ KE+PDVWI+ S +L I + + +
Sbjct: 676 QLKSLQKDLDPHWNNFSTSK--PPSIIQLAEPFKEKPDVWIDPRVYSKVLQIKAS-QIVV 732
Query: 229 SEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELV--HSSNGTTQKGKEYGGLQDDKP 286
++ + Y+LRFPR+ ++R DK W DC + ++L +S+N ++ EYG K
Sbjct: 733 TDKYKCGYTLRFPRVLKIRDDKGWKDCCSHEEIIDLFTNYSTNLNFKRDHEYGDGSGGKN 792
Query: 287 KQFRSSRK 294
K+ + S+K
Sbjct: 793 KKLKKSKK 800
>POMBASE|SPCC1183.05c [details] [associations]
symbol:lig4 "DNA ligase Lig4" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003910 "DNA ligase (ATP) activity" evidence=ISO] [GO:0005524
"ATP binding" evidence=IC] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IMP] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0032807 "DNA ligase IV complex" evidence=TAS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357
PomBase:SPCC1183.05c GO:GO:0005524 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0006303 eggNOG:COG1793
GO:GO:0003910 GO:GO:0051103 TIGRFAMs:TIGR00574 GO:GO:0032807
OrthoDB:EOG41K2MD PIR:T40845 RefSeq:NP_587888.2
ProteinModelPortal:O74833 STRING:O74833 PRIDE:O74833
EnsemblFungi:SPCC1183.05c.1 GeneID:2539042 NextBio:20800216
Uniprot:O74833
Length = 913
Score = 308 (113.5 bits), Expect = 7.8e-24, P = 7.8e-24
Identities = 106/392 (27%), Positives = 176/392 (44%)
Query: 63 VAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLI 121
V ++++E + I+ EG+V+K + G+R W+K+KP Y++ G DLD LI
Sbjct: 418 VGSTIEDIEAELRNVIQEGSEGLVIKKPSGSYHLGERMDDWIKVKPYYLQGFGEDLDCLI 477
Query: 122 IXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLS--DEELDAVVTKLK- 178
+ ++ FL L P + +F SF RVG G + D ++ T+ K
Sbjct: 478 LGGYFGRGKQSGKINSFLCGLRMDYTPKDHSEKFQSFVRVGGGFTYFDRDIIRKETEGKW 537
Query: 179 -PYFRK-YEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPY 236
P+ EY + A T E+PD+WI P+ S++L I + + S F Y
Sbjct: 538 LPWSSDALEYMELAG------TKQDFEKPDMWIH-PKDSLVLQIKA-AEVVVSNRFKTNY 589
Query: 237 SLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGE 296
+LRFPR+++VR D+ W D L + F L ++ +K ++ +K ++ R+ +
Sbjct: 590 TLRFPRLEKVRLDRSWKDALTINEFFTLKNA----VEK-QDNVSFHVNKKRKVSQKREKQ 644
Query: 297 KKNVSIVPSHFLQTDVSDIKGETSIFSDMV--FYFVNVPPAYSLDS---LHKMVVENGGT 351
KK FL D K E S SD++ +FV +PP ++ L ++++ENGG
Sbjct: 645 KK--------FLY-DEPTFKKEASPHSDVLKNLHFVVLPPTELHETKAGLQQIIIENGGL 695
Query: 352 FSMNLNNSVTH--CVAADNKGLKY--EAAKRRGDVIHYSWVLDCCSXXXXXXXXXXYYLH 407
+ N + AD + E +K +I WV+D S YL
Sbjct: 696 IHQGVGNFGKERLFLVADRVSTRVSIERSKNMCTIIRSQWVMD--SVNNQRLMPQWSYLL 753
Query: 408 LSDSSKKKLQEEVDEFSDLYFWDLDLADIKQL 439
S K + ++ S +L L ++KQL
Sbjct: 754 FSKDEKYSWKTALESLSAKSLSNL-LVELKQL 784
>FB|FBgn0030506 [details] [associations]
symbol:Lig4 "Ligase4" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=ISS] [GO:0003910 "DNA ligase (ATP)
activity" evidence=ISS;IBA] [GO:0010212 "response to ionizing
radiation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IGI]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IMP] [GO:0006273 "lagging strand elongation"
evidence=IBA] [GO:0032807 "DNA ligase IV complex" evidence=IBA]
[GO:0006266 "DNA ligation" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS50160 InterPro:IPR001357 GO:GO:0005524
GO:GO:0005694 GO:GO:0003677 GO:GO:0010212 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0000723 GO:GO:0006303
GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793 GO:GO:0003910
TIGRFAMs:TIGR00574 GO:GO:0032807 EMBL:AY119169
ProteinModelPortal:Q8MS06 SMR:Q8MS06 STRING:Q8MS06 PaxDb:Q8MS06
PRIDE:Q8MS06 FlyBase:FBgn0030506 InParanoid:Q8MS06
OrthoDB:EOG4NS1T2 ArrayExpress:Q8MS06 Bgee:Q8MS06 Uniprot:Q8MS06
Length = 918
Score = 300 (110.7 bits), Expect = 5.9e-23, P = 5.9e-23
Identities = 110/430 (25%), Positives = 194/430 (45%)
Query: 38 HVYMLSQLRSQIMAADQTGEPCWSLVAHNVDEVEKF---FKETIENRDEGIVLKDLGSKW 94
H Y+ + Q + +Q+G + A + V++F F++ +++ EGIVLK GS++
Sbjct: 389 HTYIQRAYKLQKLIVEQSGV-LQLMRARKIGSVQEFNELFQQALDSHAEGIVLKKQGSRY 447
Query: 95 EPGDR-SGKWLKLKPEYIRAG-SDLDVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYP 152
+PG R G W K K +YI+ ++ DVLII V FL+ + + PAP
Sbjct: 448 QPGVRLGGGWYKDKADYIKGLITEFDVLIIGAFYNRKRTF--VDSFLLGVLQ-PAPPGSS 504
Query: 153 RRFISFCRVGTGLSDEELDAVVTK-LKPYFRKYEYPKRAPPSFYQVTNNSKER---PDVW 208
R F +G ++ + V+ LKP++ ++ PP ++ KER PD+W
Sbjct: 505 NRPEVFS-IGVVANNTKQRGVLNHTLKPHW--HDVVNEPPPLWFHY--KPKERSGCPDLW 559
Query: 209 IESPEKSIILSI-TSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHS 267
IE P+ S+IL + +D+ + F SL FPR + R DK W +C+ ++ F +L
Sbjct: 560 IE-PQNSVILQVKAADLAP--NGAFFTRKSLHFPRTEMKRDDKTWSECMTLKEFNDLCGG 616
Query: 268 SNGTTQKGKEYGGLQD--DKPKQFRSSRKGEKKNVSIVPSHFLQTDVSDIKGETSIFSDM 325
+ K L+D K KQ R + E+ + + + + D S + +F +
Sbjct: 617 PLAIKKLNKRQLRLEDVTTKRKQMRMT-PSERSRLGLAV-YEKRYDASTSASTSKLFDGL 674
Query: 326 VFYFVNVPPA-YSLDSLHKMVVENGGTFSMNL--NNSVTHCVAADNKGLKYEAA---KRR 379
F ++ +S L ++ V+NGG N N+ C+A D L R
Sbjct: 675 SFCILSGSAGRHSKHQLQELAVKNGGCIVENPLPNDPKCFCIAGDETFLVKRLILQQPRT 734
Query: 380 GDVIHYSWVLDCCSXXXXXXXXXXYYLHLSDSSKKKLQEEVDEFSDLYFWDL-DLADIKQ 438
D++ W+L C + ++ ++ L E D D Y D+ ++ +++
Sbjct: 735 CDIVRMEWLLRVCQKQELELKPRDL-IAATEPLQQDLAECFDRHGDSYTKDIANVEELQD 793
Query: 439 LLSNVDRSED 448
LL ++ + D
Sbjct: 794 LLQGIELTAD 803
>UNIPROTKB|Q7SB49 [details] [associations]
symbol:lig-4 "DNA ligase 4" species:367110 "Neurospora
crassa OR74A" [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006289 "nucleotide-excision repair" evidence=IBA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IBA] [GO:0032807 "DNA ligase IV complex" evidence=IBA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357
Pfam:PF00533 GO:GO:0005524 GO:GO:0005694 GO:GO:0046872
GO:GO:0003677 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0006303 GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 KO:K10777 OMA:HMCPSTK GO:GO:0032807
OrthoDB:EOG41K2MD HOGENOM:HOG000176213 EMBL:AB261106
EMBL:AABX02000025 RefSeq:XP_962868.1 UniGene:Ncr.24770
ProteinModelPortal:Q7SB49 STRING:Q7SB49
EnsemblFungi:EFNCRT00000006055 GeneID:3879007 KEGG:ncr:NCU06264
Uniprot:Q7SB49
Length = 1046
Score = 232 (86.7 bits), Expect = 1.3e-19, Sum P(3) = 1.3e-19
Identities = 58/232 (25%), Positives = 117/232 (50%)
Query: 64 AHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLII 122
A + D +E + + EG+VLK+ S++ R+ W+K+KPEY+ G LD +++
Sbjct: 475 ATSPDAIEPLLRRVVAEASEGLVLKNPRSRYSLNSRNNDWIKVKPEYMSDFGESLDCVVV 534
Query: 123 XXXXXXXXXXXEVAQFL--VALAER--PAPDTYPRRFISFCRVGTGLSDEELDAVVTKLK 178
++ FL V +++ + + + +SF +VG G E+ + +
Sbjct: 535 GGYFGSGRRGGTLSSFLCGVRVSQNFIKSGNASAEKCLSFVKVGGGFKAEDYAEIRHHTE 594
Query: 179 PYFRKYEYPKRAPPSFYQVTNNSK---ERPDVWIESPEKSIILSITSDIRTIRSEVFSAP 235
++ ++ P P + ++ K E+PDVWI P S+++S+ + T +S+ F+
Sbjct: 595 GKWQDWD-PSSPPTEYIELGGGEKLQYEKPDVWIR-PSDSVVISVKAASIT-QSDQFAMG 651
Query: 236 YSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPK 287
++LRFPR ++R D+ W LD+ F E++ S ++ ++ +++ K K
Sbjct: 652 WTLRFPRFRKLRLDRAWDSALDMDEF-EVLRSKIKDQEQERKKMEMENRKRK 702
Score = 70 (29.7 bits), Expect = 1.3e-19, Sum P(3) = 1.3e-19
Identities = 24/77 (31%), Positives = 35/77 (45%)
Query: 501 ISFHGGKVCNNLANATHVVVLSV-LGYDVNFNSLTESFTAREKHLL---WNKKLHVVRSQ 556
I F GKV + L ATHVVV++ LG + R K L + +V+ +
Sbjct: 967 IRFGNGKVVDELETATHVVVVTAPLGESSKKEEREIAAELRYKISLREMGSPMPRIVKGE 1026
Query: 557 WLEDCLAKEQKSEEYEY 573
W+ED + +E EY
Sbjct: 1027 WVEDSWKEGTVVDEEEY 1043
Score = 66 (28.3 bits), Expect = 1.3e-19, Sum P(3) = 1.3e-19
Identities = 26/100 (26%), Positives = 43/100 (43%)
Query: 366 ADNKGLKYEAAKRRG---DVIHYSWVLDCC----SXXXXXXXXXXYYL-----HLSDSSK 413
AD +K + ++ D+I W+ DC Y L HL S
Sbjct: 794 ADKNVIKVASLRKANPEMDIIRPKWIFDCLVQPMPFTKQKENKKGYLLPFEPTHLFHSGS 853
Query: 414 KKLQEE----VDEFSDLYFWDL-DLADIKQLLSNVDRSED 448
++ EE VD+F D Y DL D+ ++K ++ ++ S+D
Sbjct: 854 EETSEEAEQAVDKFGDSYAGDLADINELKAIMEGME-SDD 892
Score = 51 (23.0 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 547 NKKLHVVRSQWLEDCLAK-----EQKSEEYEYSL--KPTGMQES 583
N ++ ++R +W+ DCL + +QK + Y L +PT + S
Sbjct: 808 NPEMDIIRPKWIFDCLVQPMPFTKQKENKKGYLLPFEPTHLFHS 851
>SGD|S000005531 [details] [associations]
symbol:DNL4 "DNA ligase required for nonhomologous
end-joining (NHEJ)" species:4932 "Saccharomyces cerevisiae"
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IMP;IDA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0001302 "replicative cell aging" evidence=IGI]
[GO:0032807 "DNA ligase IV complex" evidence=IPI] [GO:0005634
"nucleus" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IPI] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA;IMP;IDA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0051103 "DNA ligation involved
in DNA repair" evidence=IEA] [GO:0003909 "DNA ligase activity"
evidence=IEA] [GO:0006266 "DNA ligation" evidence=IBA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0051301 "cell division" evidence=IEA] [GO:0016874
"ligase activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357
SGD:S000005531 Pfam:PF00533 GO:GO:0005524 EMBL:BK006948
GO:GO:0051301 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0001302 GO:GO:0007049 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:U43491 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0006303 eggNOG:COG1793
GO:GO:0003910 GO:GO:0051103 TIGRFAMs:TIGR00574 BRENDA:6.5.1.1
KO:K10777 GO:GO:0032807 HOGENOM:HOG000093622 OMA:CSIANGI
OrthoDB:EOG41K2MD GeneTree:ENSGT00700000104500 EMBL:Z74913
PIR:S66870 RefSeq:NP_014647.1 PDB:1Z56 PDBsum:1Z56
ProteinModelPortal:Q08387 SMR:Q08387 DIP:DIP-5801N IntAct:Q08387
MINT:MINT-672762 STRING:Q08387 EnsemblFungi:YOR005C GeneID:854166
KEGG:sce:YOR005C CYGD:YOR005c EvolutionaryTrace:Q08387
NextBio:975950 Genevestigator:Q08387 GermOnline:YOR005C
Uniprot:Q08387
Length = 944
Score = 231 (86.4 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 99/417 (23%), Positives = 183/417 (43%)
Query: 65 HNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLIIX 123
+ V+ ++K + I EG+VLK S + R+ W+K+KPEY+ G +LD+++I
Sbjct: 424 YGVESIKKSLEVAISLGSEGVVLKYYNSSYNVASRNNNWIKVKPEYLEEFGENLDLIVIG 483
Query: 124 XXXXXXXXXX------EVAQF---------LV--ALAERPAPDTYPR--RFISFCRVGTG 164
+ ++ +V + E+ ++ R + +SFC + G
Sbjct: 484 RDSGKKDSFMLGLLVLDEEEYKKHQGDSSEIVDHSSQEKHIQNSRRRVKKILSFCSIANG 543
Query: 165 LSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITS-- 222
+S EE + K + ++++ + APP+ + + P WI+ P +SI+L I S
Sbjct: 544 ISQEEFKEIDRKTRGHWKRTS--EVAPPA--SILEFGSKIPAEWID-PSESIVLEIKSRS 598
Query: 223 -DIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGL 281
D + ++ +L R+RYDK W DC + E + T + Y
Sbjct: 599 LDNTETNMQKYATNCTLYGGYCKRIRYDKEWTDCYTLNDLYE-----SRTVKSNPSY--- 650
Query: 282 QDDKPKQFRSSRKGEKKNVSIVPSHFLQTDVSDIKGETSIFSDMVFY----FVNVPPAYS 337
Q ++ Q RK ++K V I S I ++IF+ ++FY +V
Sbjct: 651 QAER-SQLGLIRK-KRKRVLISDSFHQNRKQLPI---SNIFAGLLFYVLSDYVTEDTGIR 705
Query: 338 LD--SLHKMVVENGGTFSMNL---NNSVTHCVAADNKGL-KYEAAKRRG-DVIHYSWVLD 390
+ L K +VE+GG N+ +S+ K + +A RG D++H +WVLD
Sbjct: 706 ITRAELEKTIVEHGGKLIYNVILKRHSIGDVRLISCKTTTECKALIDRGYDILHPNWVLD 765
Query: 391 CCSXXXXXXXXXXYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSE 447
C + Y ++S + ++ VD D + + D+++ K LS++ +S+
Sbjct: 766 CIAYKRLILIEPNYCFNVSQKMRAVAEKRVDCLGDSF--ENDISETK--LSSLYKSQ 818
>POMBASE|SPAC20G8.01 [details] [associations]
symbol:cdc17 "ATP-dependent DNA ligase Cdc17"
species:4896 "Schizosaccharomyces pombe" [GO:0000723 "telomere
maintenance" evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003909 "DNA ligase activity" evidence=IMP;IDA] [GO:0003910
"DNA ligase (ATP) activity" evidence=IGI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0006281 "DNA repair" evidence=IMP] [GO:0006284
"base-excision repair" evidence=ISS] [GO:0006289
"nucleotide-excision repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0007090 "regulation of S phase of
mitotic cell cycle" evidence=IMP] [GO:0033567 "DNA replication,
Okazaki fragment processing" evidence=IMP] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=TAS] [GO:0043596
"nuclear replication fork" evidence=IC] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=IEA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 PomBase:SPAC20G8.01 GO:GO:0005739
GO:GO:0005524 EMBL:CU329670 GO:GO:0051301 GenomeReviews:CU329670_GR
GO:GO:0046872 GO:GO:0006284 GO:GO:0003677 GO:GO:0007049
GO:GO:0043596 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0000723 GO:GO:0006289 GO:GO:0007090
GO:GO:0043137 eggNOG:COG1793 HOGENOM:HOG000036006 KO:K10747
OMA:AQVACLY GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 EMBL:X05107 PIR:A29066
RefSeq:NP_593318.2 ProteinModelPortal:P12000 STRING:P12000
EnsemblFungi:SPAC20G8.01.1 GeneID:2541849 KEGG:spo:SPAC20G8.01
OrthoDB:EOG4RV60K NextBio:20802937 Uniprot:P12000
Length = 768
Score = 226 (84.6 bits), Expect = 4.8e-15, P = 4.8e-15
Identities = 71/232 (30%), Positives = 112/232 (48%)
Query: 66 NVDEVEKFFKETIENRDEGIVLKDL-G--SKWEPGDRSGKWLKLKPEYIRA-GSDLDVLI 121
+++ +E+F +E++++ EG+++K L G S +EP RS WLK+K +Y+ G LD+++
Sbjct: 551 SIESIEEFLEESVKDSCEGLMVKMLEGPDSHYEPSKRSRHWLKVKKDYLSGVGDSLDLIV 610
Query: 122 IXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYF 181
I FL+ + PDT + S C++GTG S+E L+ +LK
Sbjct: 611 IGAYYGKGKRTSVYGAFLLGCYD---PDTETVQ--SICKLGTGFSEEHLETFYNQLKDIV 665
Query: 182 RKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAP--Y--- 236
K+ FY ++ +PDVW E P K + + +D+ S V+ A Y
Sbjct: 666 ----ISKKK--DFYAHSDVPAHQPDVWFE-P-KYLWEVLAADLSL--SPVYKAAIGYVQE 715
Query: 237 ----SLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDD 284
SLRFPR R+R DK W D + E S +QK KE +D
Sbjct: 716 DKGISLRFPRFIRIREDKSWEDATTSEQVSEFYRSQVAYSQKEKEGSPAAED 767
>SGD|S000002323 [details] [associations]
symbol:CDC9 "DNA ligase found in the nucleus and
mitochondria" species:4932 "Saccharomyces cerevisiae" [GO:0006260
"DNA replication" evidence=IEA] [GO:0000278 "mitotic cell cycle"
evidence=IMP] [GO:0006310 "DNA recombination" evidence=IEA;IMP]
[GO:0003910 "DNA ligase (ATP) activity" evidence=IEA;IDA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0006284 "base-excision
repair" evidence=IMP] [GO:0006266 "DNA ligation" evidence=IMP;IDA]
[GO:0006273 "lagging strand elongation" evidence=IDA;IMP]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IMP] [GO:0051301 "cell division" evidence=IEA] [GO:0005657
"replication fork" evidence=NAS] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005739 "mitochondrion" evidence=IEA;IMP;IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] [GO:0003909 "DNA ligase
activity" evidence=IEA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 SGD:S000002323 GO:GO:0005739
GO:GO:0005524 GO:GO:0005634 GO:GO:0051301 GO:GO:0046872
GO:GO:0006284 GO:GO:0003677 EMBL:BK006938 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:Z67750
GO:GO:0006289 GO:GO:0000278 GO:GO:0005657 GO:GO:0006273
eggNOG:COG1793 HOGENOM:HOG000036006 KO:K10747 OMA:AQVACLY
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556 OrthoDB:EOG4RV60K
EMBL:X03246 EMBL:Z74212 EMBL:AY723764 EMBL:X68020 PIR:S61049
RefSeq:NP_010117.1 PDB:2OD8 PDBsum:2OD8 ProteinModelPortal:P04819
SMR:P04819 DIP:DIP-5630N IntAct:P04819 MINT:MINT-499551
STRING:P04819 PaxDb:P04819 PeptideAtlas:P04819 EnsemblFungi:YDL164C
GeneID:851391 KEGG:sce:YDL164C CYGD:YDL164c
EvolutionaryTrace:P04819 NextBio:968546 Genevestigator:P04819
GermOnline:YDL164C Uniprot:P04819
Length = 755
Score = 225 (84.3 bits), Expect = 6.0e-15, P = 6.0e-15
Identities = 70/215 (32%), Positives = 103/215 (47%)
Query: 62 LVAHNVDEVEKFFKETIENRDEGIVLKDL-G--SKWEPGDRSGKWLKLKPEYIRA-GSDL 117
+ +N+DE++KF E++ + EG+++K L G S +EP RS WLKLK +Y+ G L
Sbjct: 550 ITTNNLDELQKFLDESVNHSCEGLMVKMLEGPESHYEPSKRSRNWLKLKKDYLEGVGDSL 609
Query: 118 DVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKL 177
D+ ++ FL+ + DT F + C++GTG SDE L + +L
Sbjct: 610 DLCVLGAYYGRGKRTGTYGGFLLGCYNQ---DT--GEFETCCKIGTGFSDEMLQLLHDRL 664
Query: 178 KPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSIT---SDIRTIRSEVFSA 234
P + PK +F V ++S E PDVW E +L+ S I S F
Sbjct: 665 TPTI--IDGPKA---TF--VFDSSAE-PDVWFEPTTLFEVLTADLSLSPIYKAGSATFDK 716
Query: 235 PYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSN 269
SLRFPR R+R DK D VEL + +
Sbjct: 717 GVSLRFPRFLRIREDKGVEDATSSDQIVELYENQS 751
>CGD|CAL0006047 [details] [associations]
symbol:orf19.6155 species:5476 "Candida albicans" [GO:0003910
"DNA ligase (ATP) activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0000278
"mitotic cell cycle" evidence=IEA] [GO:0006266 "DNA ligation"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0007090 "regulation of S phase of mitotic cell
cycle" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006273 "lagging strand elongation" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0000723 "telomere
maintenance" evidence=IEA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 CGD:CAL0006047 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006310 EMBL:AACQ01000251
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG1793 KO:K10747 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
RefSeq:XP_710637.1 ProteinModelPortal:Q59LP7 STRING:Q59LP7
GeneID:3647757 KEGG:cal:CaO19.6155 Uniprot:Q59LP7
Length = 770
Score = 220 (82.5 bits), Expect = 2.2e-14, P = 2.2e-14
Identities = 68/197 (34%), Positives = 100/197 (50%)
Query: 66 NVDEVEKFFKETIENRDEGIVLKDL-GSK--WEPGDRSGKWLKLKPEYIRA-GSDLDVLI 121
N++ +++F ++I++ EG+++K L GS+ +EP RS WLKLK +Y+ G LD+++
Sbjct: 566 NLEVLQQFLDQSIKDSCEGLMVKMLNGSESFYEPSKRSRNWLKLKKDYLEGVGDSLDLVV 625
Query: 122 IXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYF 181
I FL+A + D + C++GTG SDE+L + KL P
Sbjct: 626 IGAYNGKGKRTGTYGGFLLASYNEDSGDLE-----TCCKIGTGFSDEDLLNLYNKLHP-- 678
Query: 182 RKYEYPKRAPPSFYQVTNNSKERPDVWIE-SPEKSII---LSITSDIRTIRSEVFSAPYS 237
+ PK F TNNS PDVW E S ++ LS++ +T E F S
Sbjct: 679 TEIASPKNY---FVYDTNNSNAVPDVWFEPSMLFEVLTADLSLSPIYKTGHQE-FGKGVS 734
Query: 238 LRFPRIDRVRYDKPWHD 254
LRFPR RVR DK D
Sbjct: 735 LRFPRFIRVRDDKGIED 751
>UNIPROTKB|A8JH25 [details] [associations]
symbol:LIG1 "DNA ligase" species:3055 "Chlamydomonas
reinhardtii" [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0006266
"DNA ligation" evidence=IBA] [GO:0006273 "lagging strand
elongation" evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289
GO:GO:0006273 eggNOG:COG1793 KO:K10747 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
EMBL:DS496188 RefSeq:XP_001702891.1 UniGene:Cre.3193
ProteinModelPortal:A8JH25 STRING:A8JH25 EnsemblPlants:EDO96848
GeneID:5728431 KEGG:cre:CHLREDRAFT_133143 ProtClustDB:CLSN2924027
BioCyc:CHLAMY:CHLREDRAFT_133143-MONOMER Uniprot:A8JH25
Length = 813
Score = 215 (80.7 bits), Expect = 8.3e-14, P = 8.3e-14
Identities = 64/223 (28%), Positives = 106/223 (47%)
Query: 64 AHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLII 122
+ +V+E+E F E++E EG+++K LG +EP RS WLKLK +Y+ G DV+ +
Sbjct: 604 SRDVEELESFLNESVEAGTEGLIVKTLGDTYEPSKRSSHWLKLKKDYMEGVGDTFDVVPV 663
Query: 123 XXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFR 182
+L+A+ + PDT + IS ++GTG S+E+L + ++P+
Sbjct: 664 GAFFGKGKRTGVFGAYLLAVYD---PDTETYQTIS--KLGTGFSEEQLSQLAEAMRPH-- 716
Query: 183 KYEYPKRAPPSFYQVTNNSKERPDVWIESPE----KSIILSITSDIRTIRSEVFSAP-YS 237
P+ P +Y T + PDVW ++ K+ LSI+ + V S
Sbjct: 717 --TIPQ--PRHYY--TWDESLVPDVWFDAAVVWEVKAADLSISPRHKAALGLVDPTKGIS 770
Query: 238 LRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGG 280
+RFPR+ RVR DK D ++ + Q+ + G
Sbjct: 771 IRFPRLIRVRDDKSPEDATSAAQVADMFRNQAVIRQQKAQVSG 813
>UNIPROTKB|Q7RYJ3 [details] [associations]
symbol:NCU06481 "DNA ligase" species:367110 "Neurospora
crassa OR74A" [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0006266
"DNA ligation" evidence=IBA] [GO:0006273 "lagging strand
elongation" evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289
GO:GO:0006273 eggNOG:COG1793 HOGENOM:HOG000036006 KO:K10747
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OrthoDB:EOG4RV60K EMBL:AABX02000027 OMA:ETICNIG
RefSeq:XP_957121.1 UniGene:Ncr.25681 ProteinModelPortal:Q7RYJ3
STRING:Q7RYJ3 EnsemblFungi:EFNCRT00000006215 GeneID:3873294
KEGG:ncr:NCU06481 Uniprot:Q7RYJ3
Length = 923
Score = 214 (80.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 69/237 (29%), Positives = 108/237 (45%)
Query: 61 SLVAHNVDEVEKFFKETIENRDEGIVLKDLG---SKWEPGDRSGKWLKLKPEYIRA-GSD 116
S+ +DE++ F E+++ EG+++K L S +EP RS WLK+K +Y+ G
Sbjct: 698 SMDGQELDEIQSFLDESVKAGCEGLMVKMLDGAESGYEPSKRSRNWLKIKKDYLAGIGDS 757
Query: 117 LDVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTK 176
LD++++ FL+A P+ DTY + C +GTG SDE L + +
Sbjct: 758 LDLVVLGAYHGKGKRTSVFGAFLLA-CYNPSTDTYE----TVCNIGTGFSDEVLQELHSS 812
Query: 177 LKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPE-----KSIILSITSDIRTIRSEV 231
L P + PK P FY ++ + +PDVW E P+ K+ L+++ + E
Sbjct: 813 LSPII--IDRPK---P-FYAHSSGGQHQPDVWFE-PKYVWEVKTADLTLSPRYKAGMKEG 865
Query: 232 FSAP----YSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDD 284
SLRFPR +VR DK + + E+ GK G DD
Sbjct: 866 VDPSGEKGISLRFPRFIKVRDDKKPDEATTSRMVAEMYRKQESV---GKNKGPAVDD 919
>UNIPROTKB|Q5B061 [details] [associations]
symbol:AN6069.2 "DNA ligase" species:227321 "Aspergillus
nidulans FGSC A4" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006266 "DNA ligation" evidence=IBA] [GO:0006273
"lagging strand elongation" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739
GO:GO:0005524 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
GO:GO:0006310 EMBL:AACD01000104 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273
eggNOG:COG1793 KO:K10747 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
OrthoDB:EOG4RV60K RefSeq:XP_663673.1 ProteinModelPortal:Q5B061
STRING:Q5B061 GeneID:2871154 KEGG:ani:AN6069.2 Uniprot:Q5B061
Length = 886
Score = 213 (80.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 63/234 (26%), Positives = 108/234 (46%)
Query: 65 HNVDEVEKFFKETIENRDEGIVLKDLGSK---WEPGDRSGKWLKLKPEYIRA-GSDLDVL 120
+++++++ ++++ EG+++K L ++ +EP RS WLK+K +Y+ G LD+L
Sbjct: 661 NDLEQIQTLLDDSVKASCEGLMVKMLDTEESGYEPSKRSRNWLKVKKDYLAGVGDSLDLL 720
Query: 121 IIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPY 180
++ FL+A A TY + C +GTG S+ LD + T L P
Sbjct: 721 VLGAYYGRGKRTSVYGAFLLA-AYNSNSQTYE----TICNIGTGFSEAMLDELHTTLSPL 775
Query: 181 FRKYEYPKRAPPSFYQVTNNSKERPDVWIES----PEKSIILSITSDIRTIRSEVFSAP- 235
+ PK P FY + K++PDVW+E K+ L+++ + E
Sbjct: 776 V--IDRPK---P-FYSHSTVPKDQPDVWLEPRYVWEVKTADLTLSPRYKAAADEFVGTTG 829
Query: 236 -----YSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDD 284
SLRFPR +VR DK ++ E+ ++G GG+ DD
Sbjct: 830 GGGKGVSLRFPRFIKVRDDKKPEQATTTRAVAEMYRKQEAVAKEGSGKGGVDDD 883
>ASPGD|ASPL0000001880 [details] [associations]
symbol:AN6069 species:162425 "Emericella nidulans"
[GO:0033567 "DNA replication, Okazaki fragment processing"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0000723
"telomere maintenance" evidence=IEA] [GO:0007090 "regulation of S
phase of mitotic cell cycle" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0051103
"DNA ligation involved in DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:BN001301
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
HOGENOM:HOG000036006 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
EnsemblFungi:CADANIAT00006948 OMA:ETICNIG Uniprot:C8V2T3
Length = 932
Score = 213 (80.0 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 63/234 (26%), Positives = 108/234 (46%)
Query: 65 HNVDEVEKFFKETIENRDEGIVLKDLGSK---WEPGDRSGKWLKLKPEYIRA-GSDLDVL 120
+++++++ ++++ EG+++K L ++ +EP RS WLK+K +Y+ G LD+L
Sbjct: 707 NDLEQIQTLLDDSVKASCEGLMVKMLDTEESGYEPSKRSRNWLKVKKDYLAGVGDSLDLL 766
Query: 121 IIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPY 180
++ FL+A A TY + C +GTG S+ LD + T L P
Sbjct: 767 VLGAYYGRGKRTSVYGAFLLA-AYNSNSQTYE----TICNIGTGFSEAMLDELHTTLSPL 821
Query: 181 FRKYEYPKRAPPSFYQVTNNSKERPDVWIES----PEKSIILSITSDIRTIRSEVFSAP- 235
+ PK P FY + K++PDVW+E K+ L+++ + E
Sbjct: 822 V--IDRPK---P-FYSHSTVPKDQPDVWLEPRYVWEVKTADLTLSPRYKAAADEFVGTTG 875
Query: 236 -----YSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDD 284
SLRFPR +VR DK ++ E+ ++G GG+ DD
Sbjct: 876 GGGKGVSLRFPRFIKVRDDKKPEQATTTRAVAEMYRKQEAVAKEGSGKGGVDDD 929
>UNIPROTKB|Q980T8 [details] [associations]
symbol:lig "DNA ligase" species:273057 "Sulfolobus
solfataricus P2" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006266
"DNA ligation" evidence=IBA] [GO:0006273 "lagging strand
elongation" evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] HAMAP:MF_00407 InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
InterPro:IPR022865 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0005694 GO:GO:0051301 GO:GO:0046872 GO:GO:0003677
GO:GO:0007049 GO:GO:0006310 EMBL:AE006641 GenomeReviews:AE006641_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289
GO:GO:0006273 eggNOG:COG1793 KO:K10747 OMA:AQVACLY GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 HOGENOM:HOG000036008 ProtClustDB:PRK01109
PIR:H90159 RefSeq:NP_341745.1 PDB:2HIV PDB:2HIX PDBsum:2HIV
PDBsum:2HIX ProteinModelPortal:Q980T8 SMR:Q980T8 PRIDE:Q980T8
GeneID:1455345 KEGG:sso:SSO0189 EvolutionaryTrace:Q980T8
Uniprot:Q980T8
Length = 601
Score = 210 (79.0 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 63/209 (30%), Positives = 103/209 (49%)
Query: 64 AHNVDEVEKFFKETIENRDEGIVLKDLGSK--WEPGDRSGKWLKLKPEYIRAGSD-LDVL 120
A+NV++++ FF I EG+++K +G ++ G R W+KLK +Y +D +D++
Sbjct: 390 ANNVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLV 449
Query: 121 IIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPY 180
++ +++ L+A A P D+ F S C+V +G SDE+LD + KL
Sbjct: 450 VVGGFYGKGKRGGKISSLLMA-AYNPKTDS----FESVCKVASGFSDEQLDELQKKLMEI 504
Query: 181 FRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILS--IT-SDIRTIRSEVFS--AP 235
R ++P+ NSK PD+W+E + I+ IT S + T +V A
Sbjct: 505 KRDVKHPRV----------NSKMEPDIWVEPVYVAEIIGSEITISPLHTCCQDVVEKDAG 554
Query: 236 YSLRFPRIDRVRYDKPWHDCLDVQSFVEL 264
S+RFPR R R DK D +E+
Sbjct: 555 LSIRFPRFIRWRDDKSPEDATTTDEILEM 583
>UNIPROTKB|Q7RPC6 [details] [associations]
symbol:PY01533 "DNA ligase" species:73239 "Plasmodium
yoelii yoelii" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006266 "DNA ligation" evidence=IBA] [GO:0006273
"lagging strand elongation" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739
GO:GO:0005524 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793 KO:K10747 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 EMBL:AABL01000407 RefSeq:XP_729309.1
ProteinModelPortal:Q7RPC6 STRING:Q7RPC6 GeneID:3801864
KEGG:pyo:PY01533 EuPathDB:PlasmoDB:PY01533 Uniprot:Q7RPC6
Length = 826
Score = 208 (78.3 bits), Expect = 4.9e-13, P = 4.9e-13
Identities = 68/221 (30%), Positives = 108/221 (48%)
Query: 65 HNVDEVEKFFKETIENRDEGIVLKDL--GSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLI 121
+N+D+++ F ++ IEN EG+++K L + +EP RS WLK+K +YI SD +D++
Sbjct: 610 NNIDDIDIFLQDAIENNCEGLMVKTLLDNASYEPSRRSLNWLKVKKDYIEGLSDSVDLVP 669
Query: 122 IXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYF 181
I F++A A ++ F + C+ GTG SDE L+A+ L
Sbjct: 670 IAGYYGKGKRSGVYGAFVLA-----AYNSETENFQTVCKAGTGFSDEILNALHESLSDKI 724
Query: 182 RKYEYPKRAPPSFYQVTNNSKERPDVWIESPE----KSIILSITSDIRTIRSEVFSAP-- 235
P + S+Y+V++ K PDVW ++ K+ LS+ S + T V+S
Sbjct: 725 ----IPNKK--SYYEVSD--KLNPDVWFDAHYVWEIKAADLSL-SPVHTAAIGVYSDDKG 775
Query: 236 YSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGK 276
LRFPR R+R DK Q VE + + + K K
Sbjct: 776 IGLRFPRFLRLRDDKNPEQATTAQQIVEF-YEAQFASNKNK 815
>TAIR|locus:2199953 [details] [associations]
symbol:LIG1 "DNA ligase 1" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003909 "DNA
ligase activity" evidence=IEA] [GO:0003910 "DNA ligase (ATP)
activity" evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006266 "DNA ligation" evidence=IBA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0000012 "single strand break
repair" evidence=IMP] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0006302 "double-strand break repair" evidence=IMP] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0016458 "gene
silencing" evidence=RCA] [GO:0016570 "histone modification"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] [GO:0048449 "floral organ formation" evidence=RCA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0007049 GO:GO:0006310 GO:GO:0006302
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000012
EMBL:AC011438 EMBL:AC026875 EMBL:X97924 EMBL:AK117238 EMBL:BT005964
EMBL:AK222166 IPI:IPI00535474 PIR:S71278 RefSeq:NP_172293.2
UniGene:At.36 ProteinModelPortal:Q42572 SMR:Q42572 STRING:Q42572
PaxDb:Q42572 PRIDE:Q42572 EnsemblPlants:AT1G08130.1 GeneID:837333
KEGG:ath:AT1G08130 TAIR:At1g08130 eggNOG:COG1793
HOGENOM:HOG000036006 InParanoid:Q42572 KO:K10747 OMA:AQVACLY
PhylomeDB:Q42572 ProtClustDB:PLN03113 Genevestigator:Q42572
GermOnline:AT1G08130 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
Uniprot:Q42572
Length = 790
Score = 206 (77.6 bits), Expect = 7.5e-13, P = 7.5e-13
Identities = 64/212 (30%), Positives = 103/212 (48%)
Query: 61 SLVAHNVDEVEKFFKETIENRDEGIVLKDLGSK--WEPGDRSGKWLKLKPEYIRA-GSDL 117
++ ++++DE++KF +++ EG+++K L S +EP RS WLKLK +Y+ + G +
Sbjct: 574 AVTSNDIDEIQKFLDASVDVGCEGLIIKTLDSDATYEPAKRSNNWLKLKKDYMDSIGDSV 633
Query: 118 DVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKL 177
D++ I FL+A D F S C++GTG SD LD + L
Sbjct: 634 DLVPIAAFHGRGKRTGVYGAFLLACY-----DVDKEEFQSICKIGTGFSDAMLDERSSSL 688
Query: 178 KPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPE----KSIILSITSDIRTIRSEVF- 232
+ + PK+ +Y+V ++ PDVW E E K+ L+I+ R V
Sbjct: 689 RS--QVIATPKQ----YYRVGDSLN--PDVWFEPTEVWEVKAADLTISPVHRAATGIVDP 740
Query: 233 SAPYSLRFPRIDRVRYDKPWHDCLDVQSFVEL 264
SLRFPR+ RVR DK + + +L
Sbjct: 741 DKGISLRFPRLLRVREDKKPEEATSSEQIADL 772
>DICTYBASE|DDB_G0274493 [details] [associations]
symbol:lig1 "DNA ligase I" species:44689
"Dictyostelium discoideum" [GO:0051103 "DNA ligation involved in
DNA repair" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA;IBA] [GO:0003909 "DNA ligase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] [GO:0006273 "lagging
strand elongation" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0005634 "nucleus" evidence=IEA;IBA]
[GO:0051301 "cell division" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 dictyBase:DDB_G0274493
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0051301 GO:GO:0046872 GO:GO:0003677 GenomeReviews:CM000151_GR
EMBL:AAFI02000012 GO:GO:0007049 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273
eggNOG:COG1793 KO:K10747 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
RefSeq:XP_644124.1 HSSP:P18858 ProteinModelPortal:Q869E1
STRING:Q869E1 EnsemblProtists:DDB0232265 GeneID:8619554
KEGG:ddi:DDB_G0274493 OMA:SERYSIM Uniprot:Q869E1
Length = 1192
Score = 206 (77.6 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 63/221 (28%), Positives = 108/221 (48%)
Query: 66 NVDEVEKFFKETIENRDEGIVLKDLGSK--WEPGDRSGKWLKLKPEYIRAGSD-LDVLII 122
+V++++ + +E +E EG+++K L K +EP RS WLK+K +Y++ +D LD++ I
Sbjct: 979 DVNDIQSYLEEAVEGNCEGLMVKTLKEKSIYEPSRRSYNWLKIKKDYMQGMTDSLDLVPI 1038
Query: 123 XXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFR 182
+L+A D F + C++GTG SDE+L ++LKP+
Sbjct: 1039 GAWYGKGKRTGTYGAYLLACY-----DENNEEFQTLCKIGTGFSDEQLTTFTSQLKPHLI 1093
Query: 183 KYEYPKRAPPSFYQVTNNSKERPDVWIESPEK--SII---LSITSDIRTIRSEVF--SAP 235
P + ++ +++ K PDVW SP ++ LSI S + T S + +
Sbjct: 1094 NQ------PRNQFRFSDSIK--PDVWF-SPSCVWEVLAADLSI-SPVHTAASGILDPNKG 1143
Query: 236 YSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGK 276
+LRFPR R+R DK D V++ + +Q K
Sbjct: 1144 IALRFPRFIRIRPDKSPEDATSSDQVVDMYQNQKINSQSSK 1184
>TAIR|locus:2010207 [details] [associations]
symbol:AT1G49250 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003909 "DNA ligase
activity" evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM;IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006266 "DNA ligation" evidence=IBA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160
EMBL:CP002684 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006260 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 KO:K10747 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OMA:PAFENTT IPI:IPI00521723 RefSeq:NP_175351.1
UniGene:At.52091 ProteinModelPortal:F4I1P7 SMR:F4I1P7 PRIDE:F4I1P7
EnsemblPlants:AT1G49250.1 GeneID:841349 KEGG:ath:AT1G49250
PhylomeDB:F4I1P7 Uniprot:F4I1P7
Length = 657
Score = 200 (75.5 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 64/226 (28%), Positives = 105/226 (46%)
Query: 61 SLVAHNVDEVEKFFKETIENRDEGIVLKDLGSK--WEPGDRSGKWLKLKPEYI-RAGSDL 117
+L ++++ E+++F K +I+ EG+++K L S +EP RS WLKLK +Y+ G +
Sbjct: 441 ALTSNDIGELQEFLKASIDIGCEGLMIKSLYSNATYEPAKRSNNWLKLKKDYMDNIGDSV 500
Query: 118 DVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKL 177
D++ I +L+A D F S C++GT SD EL + + L
Sbjct: 501 DLVPIATFHGRGKRTGFFGAYLLACY-----DVDKEEFQSICKIGTEFSDVELQDLSSSL 555
Query: 178 KPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSA--P 235
+ PK+ +YQV N+ PDVW+E E + + + + E P
Sbjct: 556 CS--KVIATPKQ----YYQVDNDLN--PDVWLEPTEVWEVKAADLTVSPVYREAIGIVDP 607
Query: 236 ---YSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSS--NGTTQKGK 276
SLRFPR+ R+R DK + E+ + N + +GK
Sbjct: 608 DKGISLRFPRLVRIRKDKNPEEATTSDQIAEMYQAQKHNQPSNQGK 653
>FB|FBgn0262619 [details] [associations]
symbol:DNA-ligI "DNA ligase I" species:7227 "Drosophila
melanogaster" [GO:0003910 "DNA ligase (ATP) activity"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0051103
"DNA ligation involved in DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0043596 "nuclear replication
fork" evidence=IDA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 EMBL:AE013599 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0051301 GO:GO:0003677
GO:GO:0006260 GO:GO:0007049 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG1793 KO:K10747
OMA:AQVACLY GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556
HSSP:P18858 EMBL:AY051939 EMBL:BT016103 RefSeq:NP_611843.2
UniGene:Dm.19278 ProteinModelPortal:Q9W1H4 SMR:Q9W1H4 IntAct:Q9W1H4
MINT:MINT-920323 STRING:Q9W1H4 PaxDb:Q9W1H4
EnsemblMetazoa:FBtr0072132 GeneID:37791 KEGG:dme:Dmel_CG5602
UCSC:CG5602-RA CTD:37791 FlyBase:FBgn0262619 InParanoid:Q9W1H4
OrthoDB:EOG48W9H3 PhylomeDB:Q9W1H4 GenomeRNAi:37791 NextBio:805425
Bgee:Q9W1H4 Uniprot:Q9W1H4
Length = 747
Score = 198 (74.8 bits), Expect = 5.1e-12, P = 5.1e-12
Identities = 73/257 (28%), Positives = 116/257 (45%)
Query: 42 LSQLRSQIMAADQTGEPCW----SLVAHNVDEVEKFFKETIENRDEGIVLKDLGSK--WE 95
LS+ R ++ Q E W +L +++DEV++F +E+I+ EG+++K L + +E
Sbjct: 502 LSERRKLLLEHFQEVEGEWKFATALDTNDIDEVQQFLEESIKGNCEGLMVKTLDEEATYE 561
Query: 96 PGDRSGKWLKLKPEYI-RAGSDLDVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRR 154
RS WLKLK +Y+ G LD+++I FL+A DT
Sbjct: 562 IAKRSRNWLKLKKDYLSNVGDSLDLVVIGGYKGKGRRTGTYGGFLLACY-----DTENEE 616
Query: 155 FISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPE- 213
+ S C++GTG +DE+L + K+ A S+Y+ + S E PD W E +
Sbjct: 617 YQSICKIGTGFTDEDLQTH----SEFLGKHV--TSAAKSYYRY-DPSLE-PDHWFEPVQV 668
Query: 214 ---KSIILSITSDIRTIRSEVFSAP-YSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSN 269
K LS++ R V SLRFPR R+R DK + D + S +
Sbjct: 669 WEVKCADLSLSPIHRAAIGIVDGERGISLRFPRFIRIRDDKNSENATDANQVAHMYQSQD 728
Query: 270 GT--TQKGKEYGGLQDD 284
QK ++D+
Sbjct: 729 QVKNNQKSSTQMEMEDE 745
>GENEDB_PFALCIPARUM|MAL13P1.22 [details] [associations]
symbol:MAL13P1.22 "DNA ligase 1" species:5833
"Plasmodium falciparum" [GO:0005657 "replication fork"
evidence=ISS] [GO:0006266 "DNA ligation" evidence=ISS] [GO:0006273
"lagging strand elongation" evidence=ISS] [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524 GO:GO:0003677
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006266 GO:GO:0005657 EMBL:AL844509 GenomeReviews:AL844509_GR
GO:GO:0006273 HOGENOM:HOG000036006 KO:K10747 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 GO:GO:0020011 OMA:ETICNIG RefSeq:XP_001349768.1
ProteinModelPortal:Q8IES4 EnsemblProtists:MAL13P1.22:mRNA
GeneID:813777 KEGG:pfa:MAL13P1.22 EuPathDB:PlasmoDB:PF3D7_1304100
ProtClustDB:CLSZ2432498 Uniprot:Q8IES4
Length = 912
Score = 198 (74.8 bits), Expect = 6.8e-12, P = 6.8e-12
Identities = 62/221 (28%), Positives = 107/221 (48%)
Query: 65 HNVDEVEKFFKETIENRDEGIVLKDL--GSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLI 121
+N+++++ F ++ IEN EG+++K L + +EP RS WLK+K +Y+ SD +D++
Sbjct: 696 NNIEDIDMFLQDAIENNCEGLMVKTLVENASYEPSRRSLNWLKVKKDYVEGLSDSVDLVP 755
Query: 122 IXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYF 181
I F++A A ++ F + C+ GTG SDE L + L
Sbjct: 756 IAGYYGKGKRSGVYGAFVLA-----AYNSETENFQTVCKAGTGFSDEILSTLYETLSEKI 810
Query: 182 RKYEYPKRAPPSFYQVTNNSKERPDVWIES----PEKSIILSITSDIRTIRSEVFSAP-- 235
P + S+Y+V++ K PDVW ++ K+ LS+ S + T +++
Sbjct: 811 ----IPNKK--SYYEVSD--KLNPDVWFDAHYVWEVKAADLSL-SPVHTAAIGIYADDKG 861
Query: 236 YSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGK 276
LRFPR R+R DK Q V+ + + ++ K K
Sbjct: 862 IGLRFPRFLRLREDKNAEQATTTQQIVDF-YEAQFSSNKNK 901
>UNIPROTKB|Q8IES4 [details] [associations]
symbol:PfLigI "DNA ligase" species:36329 "Plasmodium
falciparum 3D7" [GO:0005657 "replication fork" evidence=ISS]
[GO:0006266 "DNA ligation" evidence=ISS] [GO:0006273 "lagging
strand elongation" evidence=ISS] [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524 GO:GO:0003677
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006266 GO:GO:0005657 EMBL:AL844509 GenomeReviews:AL844509_GR
GO:GO:0006273 HOGENOM:HOG000036006 KO:K10747 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 GO:GO:0020011 OMA:ETICNIG RefSeq:XP_001349768.1
ProteinModelPortal:Q8IES4 EnsemblProtists:MAL13P1.22:mRNA
GeneID:813777 KEGG:pfa:MAL13P1.22 EuPathDB:PlasmoDB:PF3D7_1304100
ProtClustDB:CLSZ2432498 Uniprot:Q8IES4
Length = 912
Score = 198 (74.8 bits), Expect = 6.8e-12, P = 6.8e-12
Identities = 62/221 (28%), Positives = 107/221 (48%)
Query: 65 HNVDEVEKFFKETIENRDEGIVLKDL--GSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLI 121
+N+++++ F ++ IEN EG+++K L + +EP RS WLK+K +Y+ SD +D++
Sbjct: 696 NNIEDIDMFLQDAIENNCEGLMVKTLVENASYEPSRRSLNWLKVKKDYVEGLSDSVDLVP 755
Query: 122 IXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYF 181
I F++A A ++ F + C+ GTG SDE L + L
Sbjct: 756 IAGYYGKGKRSGVYGAFVLA-----AYNSETENFQTVCKAGTGFSDEILSTLYETLSEKI 810
Query: 182 RKYEYPKRAPPSFYQVTNNSKERPDVWIES----PEKSIILSITSDIRTIRSEVFSAP-- 235
P + S+Y+V++ K PDVW ++ K+ LS+ S + T +++
Sbjct: 811 ----IPNKK--SYYEVSD--KLNPDVWFDAHYVWEVKAADLSL-SPVHTAAIGIYADDKG 861
Query: 236 YSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGK 276
LRFPR R+R DK Q V+ + + ++ K K
Sbjct: 862 IGLRFPRFLRLREDKNAEQATTTQQIVDF-YEAQFSSNKNK 901
>UNIPROTKB|Q75CA4 [details] [associations]
symbol:LIG4 "DNA ligase 4" species:284811 "Ashbya gossypii
ATCC 10895" [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006289 "nucleotide-excision repair" evidence=IBA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IBA] [GO:0032807 "DNA ligase IV complex" evidence=IBA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357
Pfam:PF00533 GO:GO:0005524 GO:GO:0005694 GO:GO:0046872
GO:GO:0003677 GO:GO:0001302 GO:GO:0000790 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0006303 GO:GO:0006289
EMBL:AE016816 GenomeReviews:AE016816_GR GO:GO:0006273
eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103 TIGRFAMs:TIGR00574
KO:K10777 GO:GO:0032807 RefSeq:NP_983411.1 HSSP:Q08387
ProteinModelPortal:Q75CA4 STRING:Q75CA4 EnsemblFungi:AAS51235
GeneID:4619536 KEGG:ago:AGOS_ACR008W HOGENOM:HOG000093622
OMA:CSIANGI OrthoDB:EOG41K2MD PhylomeDB:Q75CA4 Uniprot:Q75CA4
Length = 981
Score = 191 (72.3 bits), Expect = 4.3e-11, P = 4.3e-11
Identities = 111/535 (20%), Positives = 215/535 (40%)
Query: 78 IENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLIIXXXXXXXXXXXEVA 136
+ + EGIVLK SK+ G R W+K+KPEY+ G ++D+++I A
Sbjct: 479 VAHGSEGIVLKKARSKYSVGKRDDSWIKIKPEYLENFGENMDLVVIGRDKGRKDSFI-CA 537
Query: 137 QFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVT-----------KLKPYFRK-- 183
+ +E+ P +Y S + +++ ++ + K R
Sbjct: 538 LAVTDDSEKNNPSSYESGSDSDSDSEPIIVQPKIEKFISFCSIANGISNEEFKEIDRLTR 597
Query: 184 ---YEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITS---DIRTIRSEVFSAPYS 237
+ Y +R PP+ + V +K P WI+ P+ S++L + + D +S+++ +
Sbjct: 598 GNWFPYDERKPPTDW-VEFGTKT-PREWID-PKNSVVLEVKARSIDNEESKSDLYKTGST 654
Query: 238 LRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEK 297
L R+R+DK W V + T ++ + Y + + +F R +
Sbjct: 655 LYNAYCKRIRHDKNWSTASTVAEY--------DTAREARSYFNVSQNA--KFGKDRSSPR 704
Query: 298 KNVSIVPSHFLQTDVSDIKGETSIFSDMVFYFV-----NVPPAYSLDS--LHKMVVENGG 350
K + H L D+ K + F +++V ++ ++D+ + + VV GG
Sbjct: 705 KRRTF---H-LVGDIDVTKPSKADFLKGYYFYVTSGYFDLQSKKNIDASEIGEAVVSCGG 760
Query: 351 TFSMNLNNSVT----HCVAA-DNKGLKYEAAKRRGDVIHYSWVLDCCSXXXXXXXXXXYY 405
T+ NL + + + D + LK +R D+IH W++DC Y
Sbjct: 761 TYIHNLRIRASLDKLYILGCKDTRELKM-LIERGYDIIHPEWLMDCVKYGTMLQIEPKYV 819
Query: 406 LHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKW 465
S+ K+ + + D++ + Y + D + L+N + E+ + ++
Sbjct: 820 YSASEELMKQARNQEDKYGESYQLPVT-EDTLKALAN-KQVEEGYASEMGTDAVSEYERL 877
Query: 466 SCFHGCCIYF-----YHSTEPLSPDWEVXXXXXXXXXXXEISFHGGKVCNNLANATHVVV 520
F G Y YHS+ W + GG+V N+L AT VV
Sbjct: 878 LIFKGWLFYILDDYAYHSSWSDIVKWNIESC-------------GGEVTNDLELATIVVA 924
Query: 521 LSVLGYDVNFNSLTESFTAREKHLLWNKKL-HVVRSQWLEDCLAKEQKSEEYEYS 574
+ ++ ++ + AR + + +V S+W+E C+ + +E EY+
Sbjct: 925 VKDCFSQLSLQAVRNNIGARITGSNDVQPIPKIVTSEWVEACMEAQYLVDEDEYA 979
>WB|WBGene00002985 [details] [associations]
symbol:lig-1 species:6239 "Caenorhabditis elegans"
[GO:0003910 "DNA ligase (ATP) activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003909 "DNA ligase activity" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0006898 GO:GO:0005694
GO:GO:0046872 GO:GO:0003677 GO:GO:0007049 GO:GO:0000910
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006273 eggNOG:COG1793 HOGENOM:HOG000036006 KO:K10747
OMA:AQVACLY GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 EMBL:Z73970 PIR:T19544
RefSeq:NP_741625.2 RefSeq:NP_741626.2 ProteinModelPortal:Q27474
SMR:Q27474 STRING:Q27474 PaxDb:Q27474 PRIDE:Q27474
EnsemblMetazoa:C29A12.3a GeneID:179502 KEGG:cel:CELE_C29A12.3
UCSC:C29A12.3a CTD:179502 WormBase:C29A12.3a WormBase:C29A12.3b
GeneTree:ENSGT00700000104556 InParanoid:Q27474 NextBio:905678
Uniprot:Q27474
Length = 773
Score = 190 (71.9 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
Identities = 68/288 (23%), Positives = 125/288 (43%)
Query: 45 LRSQIMAADQTGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSK--WEPGDRSGK 102
LR+ D + S+ ++ DE+ FF E ++N+ EG+++K L ++ +E RS
Sbjct: 401 LRTNFKKIDGSFYFATSVDTNDTDEINSFFDEAVQNKCEGLMIKTLDTEATYEISRRSHS 460
Query: 103 WLKLKPEYIRA-GSDLDVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRV 161
WLK+K +Y+ G LD++++ +L+ P + Y S C++
Sbjct: 461 WLKMKKDYVDGVGDTLDLVVMGAYSGVGKRTGVYGGYLLG-CYNPTTEEYE----SVCKI 515
Query: 162 GTGLSDEEL--------DAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPE 213
GTG +DE+L D + K Y++ +++ + +F + D+ I SP
Sbjct: 516 GTGFTDEDLAEQYKILQDKKIDKSPSYYQ-FDHTLKPDDTFSPYLVFEVKCADITI-SPR 573
Query: 214 KSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNG-TT 272
+T D + I SLRFPR R+R DK D + +E+ +
Sbjct: 574 HKAASGLTDDGKGI---------SLRFPRFLRIRDDKNSDDATSSEQVLEMYKNQEAFAN 624
Query: 273 QKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHFLQTDVSD-IKGET 319
QK ++ + +D + + + E ++ + V + IK ET
Sbjct: 625 QKIEKADAVDEDDEFEEKEDEEEELNMTNVSEGSSKENPVKEEIKKET 672
Score = 47 (21.6 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
Identities = 20/88 (22%), Positives = 38/88 (43%)
Query: 702 DDEENLETRQTNVVEDLESLDRGKALQQEVVKDFGKE---KQTVRAPDIEMRERYHSKDS 758
+DEE E TNV E + +++E+ K+ K K+ + P ++ S
Sbjct: 643 EDEEE-ELNMTNVSE---GSSKENPVKEEIKKETPKSVSPKKFEKKPPVKSSPVNKSPVK 698
Query: 759 ETTDKQQVDAVQAMLLDMIPSLGMKNEK 786
+ K++ + + + + S KNEK
Sbjct: 699 SSPIKKEAEKKKGPVASIFSSSTKKNEK 726
>UNIPROTKB|Q27474 [details] [associations]
symbol:lig-1 "DNA ligase 1" species:6239 "Caenorhabditis
elegans" [GO:0006289 "nucleotide-excision repair" evidence=IBA]
[GO:0006273 "lagging strand elongation" evidence=IBA] [GO:0006266
"DNA ligation" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0006898 GO:GO:0005694
GO:GO:0046872 GO:GO:0003677 GO:GO:0007049 GO:GO:0000910
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006273 eggNOG:COG1793 HOGENOM:HOG000036006 KO:K10747
OMA:AQVACLY GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 EMBL:Z73970 PIR:T19544
RefSeq:NP_741625.2 RefSeq:NP_741626.2 ProteinModelPortal:Q27474
SMR:Q27474 STRING:Q27474 PaxDb:Q27474 PRIDE:Q27474
EnsemblMetazoa:C29A12.3a GeneID:179502 KEGG:cel:CELE_C29A12.3
UCSC:C29A12.3a CTD:179502 WormBase:C29A12.3a WormBase:C29A12.3b
GeneTree:ENSGT00700000104556 InParanoid:Q27474 NextBio:905678
Uniprot:Q27474
Length = 773
Score = 190 (71.9 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
Identities = 68/288 (23%), Positives = 125/288 (43%)
Query: 45 LRSQIMAADQTGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSK--WEPGDRSGK 102
LR+ D + S+ ++ DE+ FF E ++N+ EG+++K L ++ +E RS
Sbjct: 401 LRTNFKKIDGSFYFATSVDTNDTDEINSFFDEAVQNKCEGLMIKTLDTEATYEISRRSHS 460
Query: 103 WLKLKPEYIRA-GSDLDVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRV 161
WLK+K +Y+ G LD++++ +L+ P + Y S C++
Sbjct: 461 WLKMKKDYVDGVGDTLDLVVMGAYSGVGKRTGVYGGYLLG-CYNPTTEEYE----SVCKI 515
Query: 162 GTGLSDEEL--------DAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPE 213
GTG +DE+L D + K Y++ +++ + +F + D+ I SP
Sbjct: 516 GTGFTDEDLAEQYKILQDKKIDKSPSYYQ-FDHTLKPDDTFSPYLVFEVKCADITI-SPR 573
Query: 214 KSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNG-TT 272
+T D + I SLRFPR R+R DK D + +E+ +
Sbjct: 574 HKAASGLTDDGKGI---------SLRFPRFLRIRDDKNSDDATSSEQVLEMYKNQEAFAN 624
Query: 273 QKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVPSHFLQTDVSD-IKGET 319
QK ++ + +D + + + E ++ + V + IK ET
Sbjct: 625 QKIEKADAVDEDDEFEEKEDEEEELNMTNVSEGSSKENPVKEEIKKET 672
Score = 47 (21.6 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
Identities = 20/88 (22%), Positives = 38/88 (43%)
Query: 702 DDEENLETRQTNVVEDLESLDRGKALQQEVVKDFGKE---KQTVRAPDIEMRERYHSKDS 758
+DEE E TNV E + +++E+ K+ K K+ + P ++ S
Sbjct: 643 EDEEE-ELNMTNVSE---GSSKENPVKEEIKKETPKSVSPKKFEKKPPVKSSPVNKSPVK 698
Query: 759 ETTDKQQVDAVQAMLLDMIPSLGMKNEK 786
+ K++ + + + + S KNEK
Sbjct: 699 SSPIKKEAEKKKGPVASIFSSSTKKNEK 726
>UNIPROTKB|G4N7T1 [details] [associations]
symbol:MGG_06370 "DNA ligase" species:242507 "Magnaporthe
oryzae 70-15" [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:CM001234
KO:K10747 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 RefSeq:XP_003717204.1
EnsemblFungi:MGG_06370T0 GeneID:2684525 KEGG:mgr:MGG_06370
Uniprot:G4N7T1
Length = 896
Score = 189 (71.6 bits), Expect = 6.2e-11, P = 6.2e-11
Identities = 61/222 (27%), Positives = 103/222 (46%)
Query: 67 VDEVEKFFKETIENRDEGIVLKDLG---SKWEPGDRSGKWLKLKPEYIRA-GSDLDVLII 122
+DE++ F E+++ EG+++K L S +EP RS WLK+K +Y+ G LD++++
Sbjct: 677 LDEIQTFLDESVKASCEGLMVKMLDGTESGYEPSKRSRNWLKIKKDYLSGIGDSLDLVVL 736
Query: 123 XXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFR 182
FL+A P+ D Y + C +GTG S+ L+ + T+LK
Sbjct: 737 GAYYGKGKRTSVYGAFLLA-CYNPSSDKYE----TVCNIGTGFSEAVLEELHTQLKDTV- 790
Query: 183 KYEYPKRAPPSFYQVTNNSKERPDVWIES----PEKSIILSITSDIRTIRSEVFSAP--- 235
+ PK P FY ++ + +PDVW E K+ L+++ + E
Sbjct: 791 -IDRPK---P-FYSHSSGGQHQPDVWFEPRFVWEVKTADLTLSPRYKAGCGEGVDPSGTK 845
Query: 236 -YSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQ-KG 275
SLRFPR ++R DK + + E+ ++ KG
Sbjct: 846 GISLRFPRFIKLRDDKKPDEATSSRQVAEMYRKQESVSKNKG 887
>UNIPROTKB|Q75CS4 [details] [associations]
symbol:ACL155W "DNA ligase" species:284811 "Ashbya gossypii
ATCC 10895" [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0006266
"DNA ligation" evidence=IBA] [GO:0006273 "lagging strand
elongation" evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0005694 GO:GO:0006284 GO:GO:0003677
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006289 GO:GO:0000278 EMBL:AE016816 GenomeReviews:AE016816_GR
GO:GO:0006273 HOGENOM:HOG000036006 KO:K10747 OMA:AQVACLY
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OrthoDB:EOG4RV60K RefSeq:NP_983249.1
ProteinModelPortal:Q75CS4 STRING:Q75CS4 EnsemblFungi:AAS51073
GeneID:4619369 KEGG:ago:AGOS_ACL155W PhylomeDB:Q75CS4
Uniprot:Q75CS4
Length = 697
Score = 182 (69.1 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 56/204 (27%), Positives = 92/204 (45%)
Query: 67 VDEVEKFFKETIENRDEGIVLKDLG---SKWEPGDRSGKWLKLKPEYIRA-GSDLDVLII 122
+ E++ + ++++ EG+++K L S++EP RS WLKLK +Y+ G LD+ ++
Sbjct: 497 LSELQTYLEQSVSASCEGLMVKMLDGEESQYEPSKRSRNWLKLKKDYLEGVGDSLDLAVL 556
Query: 123 XXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFR 182
FL+ PD F + C++GTG S+E L ++ +LK
Sbjct: 557 GAYYGRGKRTGTYGGFLLGCYN---PDL--EEFETCCKIGTGFSEEVLQSLHAQLK---- 607
Query: 183 KYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRS---EVFSAPYSLR 239
+ AP V+ + PDVW E +L+ + + +V+ SLR
Sbjct: 608 --DTVIAAPRG--DVSYDDSSPPDVWFEPAMLFEVLTADLSLSPVYKAGRDVYGKGISLR 663
Query: 240 FPRIDRVRYDKPWHDCLDVQSFVE 263
FPR R+R DK D VE
Sbjct: 664 FPRFLRIREDKSVTDATSSDQIVE 687
>UNIPROTKB|F1RL99 [details] [associations]
symbol:LIG1 "DNA ligase" species:9823 "Sus scrofa"
[GO:0042542 "response to hydrogen peroxide" evidence=IEA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003910 "DNA ligase (ATP) activity" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 OMA:AQVACLY
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556 EMBL:FP102640
Ensembl:ENSSSCT00000003469 Uniprot:F1RL99
Length = 915
Score = 182 (69.1 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 61/198 (30%), Positives = 97/198 (48%)
Query: 61 SLVAHNVDEVEKFFKETIENRDEGIVLK--DLGSKWEPGDRSGKWLKLKPEYIRAGSD-L 117
SL + D++ +F ++++++ EG+++K D+ + +E RS WLKLK +Y+ SD L
Sbjct: 694 SLDTKDTDQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVSDTL 753
Query: 118 DVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKL 177
D+++I FL+A + + + + C++GTG SDEEL+A L
Sbjct: 754 DLVVIGAYLGRGKRAGRYGGFLLASYDEESEELQ-----AICKLGTGFSDEELEAHHQSL 808
Query: 178 KPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPE----KSIILSITSDIRTIRSEVFS 233
+ P AP S+ V + PD W++ K LS++ R V S
Sbjct: 809 QALV----LP--APRSY--VRADGAVAPDHWLDPSAVWEVKCADLSLSPIYPAARGLVDS 860
Query: 234 AP-YSLRFPRIDRVRYDK 250
SLRFPR RVR DK
Sbjct: 861 EKGISLRFPRFIRVRDDK 878
>UNIPROTKB|A4IFC8 [details] [associations]
symbol:LIG1 "DNA ligase" species:9913 "Bos taurus"
[GO:0006289 "nucleotide-excision repair" evidence=IBA] [GO:0006273
"lagging strand elongation" evidence=IBA] [GO:0006266 "DNA
ligation" evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0042542 "response to hydrogen peroxide" evidence=IEA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0051103
"DNA ligation involved in DNA repair" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006273
eggNOG:COG1793 HOGENOM:HOG000036006 KO:K10747 OMA:AQVACLY
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556 CTD:3978
HOVERGEN:HBG005514 EMBL:DAAA02047435 EMBL:BC134518 IPI:IPI00686777
RefSeq:NP_001096018.1 UniGene:Bt.12876 SMR:A4IFC8 STRING:A4IFC8
Ensembl:ENSBTAT00000031920 GeneID:100124507 KEGG:bta:100124507
NextBio:20788728 Uniprot:A4IFC8
Length = 916
Score = 181 (68.8 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 59/198 (29%), Positives = 96/198 (48%)
Query: 61 SLVAHNVDEVEKFFKETIENRDEGIVLK--DLGSKWEPGDRSGKWLKLKPEYIRA-GSDL 117
SL + +++ +F ++++++ EG+++K D+ + +E RS WLKLK +Y+ G L
Sbjct: 695 SLDTKDTEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLEGVGDTL 754
Query: 118 DVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKL 177
D+++I FL+A + D F + C++GTG SDEEL+ +L
Sbjct: 755 DLVVIGAYLGKGKRAGRYGGFLLA-----SYDEESEEFQAICKLGTGFSDEELEEHHQRL 809
Query: 178 KPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPE----KSIILSITSDIRTIRSEVFS 233
+ P P S+ V + PD W++ + K LS++ R V S
Sbjct: 810 QALV----LP--TPRSY--VRADGAVAPDHWLDPSDVWEVKCADLSLSPIYPAARGLVDS 861
Query: 234 AP-YSLRFPRIDRVRYDK 250
SLRFPR RVR DK
Sbjct: 862 EKGISLRFPRFIRVREDK 879
>UNIPROTKB|F6URE1 [details] [associations]
symbol:LIG1 "DNA ligase" species:9615 "Canis lupus
familiaris" [GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 OMA:AQVACLY GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556
Ensembl:ENSCAFT00000006495 EMBL:AAEX03000828 Uniprot:F6URE1
Length = 911
Score = 178 (67.7 bits), Expect = 9.9e-10, P = 9.9e-10
Identities = 59/198 (29%), Positives = 94/198 (47%)
Query: 61 SLVAHNVDEVEKFFKETIENRDEGIVLK--DLGSKWEPGDRSGKWLKLKPEYIRA-GSDL 117
SL + D++ +F ++++++ EG+++K D+ + +E RS WLKLK +Y+ G L
Sbjct: 691 SLDTKDTDQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTL 750
Query: 118 DVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKL 177
D+++I FL+A A D + C++GTG SDEEL+ +L
Sbjct: 751 DLVVIGAYLGRGKRAGRYGGFLLA-----AYDEESEELQAICKLGTGFSDEELEEHYQRL 805
Query: 178 KPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPE----KSIILSITSDIRTIRSEVFS 233
+ P P S+ +V + PD W++ K LS++ R V
Sbjct: 806 QALV----LP--TPRSYVRV--DGAVAPDHWLDPSAVWEVKCADLSLSPIYPAARGLVDG 857
Query: 234 AP-YSLRFPRIDRVRYDK 250
SLRFPR RVR DK
Sbjct: 858 EKGISLRFPRFIRVREDK 875
>UNIPROTKB|E2QTV4 [details] [associations]
symbol:LIG1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 Ensembl:ENSCAFT00000006495 Uniprot:E2QTV4
Length = 919
Score = 178 (67.7 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 59/198 (29%), Positives = 94/198 (47%)
Query: 61 SLVAHNVDEVEKFFKETIENRDEGIVLK--DLGSKWEPGDRSGKWLKLKPEYIRA-GSDL 117
SL + D++ +F ++++++ EG+++K D+ + +E RS WLKLK +Y+ G L
Sbjct: 699 SLDTKDTDQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTL 758
Query: 118 DVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKL 177
D+++I FL+A A D + C++GTG SDEEL+ +L
Sbjct: 759 DLVVIGAYLGRGKRAGRYGGFLLA-----AYDEESEELQAICKLGTGFSDEELEEHYQRL 813
Query: 178 KPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPE----KSIILSITSDIRTIRSEVFS 233
+ P P S+ +V + PD W++ K LS++ R V
Sbjct: 814 QALV----LP--TPRSYVRV--DGAVAPDHWLDPSAVWEVKCADLSLSPIYPAARGLVDG 865
Query: 234 AP-YSLRFPRIDRVRYDK 250
SLRFPR RVR DK
Sbjct: 866 EKGISLRFPRFIRVREDK 883
>UNIPROTKB|F5GZ28 [details] [associations]
symbol:LIG1 "DNA ligase" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0003910 "DNA
ligase (ATP) activity" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AC011466 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 HGNC:HGNC:6598 ChiTaRS:LIG1 IPI:IPI01010243
ProteinModelPortal:F5GZ28 SMR:F5GZ28 Ensembl:ENST00000536218
UCSC:uc010xzf.1 ArrayExpress:F5GZ28 Bgee:F5GZ28 Uniprot:F5GZ28
Length = 851
Score = 174 (66.3 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 65/233 (27%), Positives = 105/233 (45%)
Query: 61 SLVAHNVDEVEKFFKETIENRDEGIVLK--DLGSKWEPGDRSGKWLKLKPEYIRA-GSDL 117
SL +++++ +F ++++++ EG+++K D+ + +E RS WLKLK +Y+ G L
Sbjct: 630 SLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTL 689
Query: 118 DVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKL 177
D+++I FL+A + + + + C++GTG SDEEL+ L
Sbjct: 690 DLVVIGAYLGRGKRAGRYGGFLLASYDEDSEELQ-----AICKLGTGFSDEELEEHHQSL 744
Query: 178 KPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPE----KSIILSITSDIRTIRSEVFS 233
K P P Y V + PD W++ K LS++ R V S
Sbjct: 745 KALV----LPSPRP---Y-VRIDGAVIPDHWLDPSAVWEVKCADLSLSPIYPAARGLVDS 796
Query: 234 AP-YSLRFPRIDRVRYDK-PWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDD 284
SLRFPR RVR DK P Q S Q+G++ G +D
Sbjct: 797 DKGISLRFPRFIRVREDKQPEQATTSAQVACLYRKQSQIQNQQGEDSGSDPED 849
>UNIPROTKB|B4DTU4 [details] [associations]
symbol:LIG1 "DNA ligase" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0003910 "DNA
ligase (ATP) activity" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AC011466 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 UniGene:Hs.1770 HGNC:HGNC:6598
HOVERGEN:HBG005514 ChiTaRS:LIG1 EMBL:AK300370 IPI:IPI01011603
SMR:B4DTU4 STRING:B4DTU4 Ensembl:ENST00000427526 UCSC:uc010xzg.1
Uniprot:B4DTU4
Length = 888
Score = 174 (66.3 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 65/233 (27%), Positives = 105/233 (45%)
Query: 61 SLVAHNVDEVEKFFKETIENRDEGIVLK--DLGSKWEPGDRSGKWLKLKPEYIRA-GSDL 117
SL +++++ +F ++++++ EG+++K D+ + +E RS WLKLK +Y+ G L
Sbjct: 667 SLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTL 726
Query: 118 DVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKL 177
D+++I FL+A + + + + C++GTG SDEEL+ L
Sbjct: 727 DLVVIGAYLGRGKRAGRYGGFLLASYDEDSEELQ-----AICKLGTGFSDEELEEHHQSL 781
Query: 178 KPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPE----KSIILSITSDIRTIRSEVFS 233
K P P Y V + PD W++ K LS++ R V S
Sbjct: 782 KALV----LPSPRP---Y-VRIDGAVIPDHWLDPSAVWEVKCADLSLSPIYPAARGLVDS 833
Query: 234 AP-YSLRFPRIDRVRYDK-PWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDD 284
SLRFPR RVR DK P Q S Q+G++ G +D
Sbjct: 834 DKGISLRFPRFIRVREDKQPEQATTSAQVACLYRKQSQIQNQQGEDSGSDPED 886
>UNIPROTKB|P18858 [details] [associations]
symbol:LIG1 "DNA ligase 1" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0051103 "DNA ligation
involved in DNA repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IEA] [GO:0042542 "response to hydrogen peroxide"
evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0006273
"lagging strand elongation" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA;TAS] [GO:0003909 "DNA
ligase activity" evidence=IDA] [GO:0033151 "V(D)J recombination"
evidence=IDA] [GO:0006259 "DNA metabolic process" evidence=TAS]
[GO:0009653 "anatomical structure morphogenesis" evidence=TAS]
[GO:0000084 "S phase of mitotic cell cycle" evidence=TAS]
[GO:0000278 "mitotic cell cycle" evidence=TAS] [GO:0000722
"telomere maintenance via recombination" evidence=TAS] [GO:0000723
"telomere maintenance" evidence=TAS] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand
elongation involved in DNA replication" evidence=TAS] [GO:0006281
"DNA repair" evidence=TAS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=TAS] [GO:0006284
"base-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0006302 "double-strand break repair" evidence=TAS] [GO:0032201
"telomere maintenance via semi-conservative replication"
evidence=TAS] Reactome:REACT_216 InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739
GO:GO:0005524 GO:GO:0005694 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0051301 GO:GO:0046872 GO:GO:0006284 GO:GO:0003677
GO:GO:0000724 EMBL:CH471177 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0009653 GO:GO:0000084 GO:GO:0000722
Reactome:REACT_383 GO:GO:0006283 DrugBank:DB00290 GO:GO:0032201
GO:GO:0006273 eggNOG:COG1793 HOGENOM:HOG000036006 KO:K10747
OMA:AQVACLY GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 EMBL:M36067 EMBL:AF527418
EMBL:AK314210 EMBL:BC108318 IPI:IPI00219841 PIR:A36048
RefSeq:NP_000225.1 UniGene:Hs.1770 PDB:1X9N PDBsum:1X9N
ProteinModelPortal:P18858 SMR:P18858 DIP:DIP-24215N IntAct:P18858
MINT:MINT-141868 STRING:P18858 PhosphoSite:P18858 DMDM:118773
PaxDb:P18858 PeptideAtlas:P18858 PRIDE:P18858
Ensembl:ENST00000263274 GeneID:3978 KEGG:hsa:3978 UCSC:uc002pia.1
CTD:3978 GeneCards:GC19M048618 HGNC:HGNC:6598 HPA:CAB037015
MIM:126391 neXtProt:NX_P18858 PharmGKB:PA30372 HOVERGEN:HBG005514
InParanoid:P18858 OrthoDB:EOG4RBQJ6 PhylomeDB:P18858
BindingDB:P18858 ChEMBL:CHEMBL5694 ChiTaRS:LIG1
EvolutionaryTrace:P18858 GenomeRNAi:3978 NextBio:15592
ArrayExpress:P18858 Bgee:P18858 CleanEx:HS_LIG1
Genevestigator:P18858 GermOnline:ENSG00000105486 GO:GO:0006297
Uniprot:P18858
Length = 919
Score = 174 (66.3 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 65/233 (27%), Positives = 105/233 (45%)
Query: 61 SLVAHNVDEVEKFFKETIENRDEGIVLK--DLGSKWEPGDRSGKWLKLKPEYIRA-GSDL 117
SL +++++ +F ++++++ EG+++K D+ + +E RS WLKLK +Y+ G L
Sbjct: 698 SLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTL 757
Query: 118 DVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKL 177
D+++I FL+A + + + + C++GTG SDEEL+ L
Sbjct: 758 DLVVIGAYLGRGKRAGRYGGFLLASYDEDSEELQ-----AICKLGTGFSDEELEEHHQSL 812
Query: 178 KPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPE----KSIILSITSDIRTIRSEVFS 233
K P P Y V + PD W++ K LS++ R V S
Sbjct: 813 KALV----LPSPRP---Y-VRIDGAVIPDHWLDPSAVWEVKCADLSLSPIYPAARGLVDS 864
Query: 234 AP-YSLRFPRIDRVRYDK-PWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDD 284
SLRFPR RVR DK P Q S Q+G++ G +D
Sbjct: 865 DKGISLRFPRFIRVREDKQPEQATTSAQVACLYRKQSQIQNQQGEDSGSDPED 917
>UNIPROTKB|Q8TSR7 [details] [associations]
symbol:lig1 "DNA ligase 1" species:188937 "Methanosarcina
acetivorans C2A" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006266
"DNA ligation" evidence=IBA] [GO:0006273 "lagging strand
elongation" evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] HAMAP:MF_00407 InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
InterPro:IPR022865 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0005694 GO:GO:0051301 GO:GO:0046872 GO:GO:0003677
GO:GO:0007049 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793
KO:K10747 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 HSSP:P18858 EMBL:AE010299
RefSeq:NP_615688.1 ProteinModelPortal:Q8TSR7 GeneID:1472620
GenomeReviews:AE010299_GR KEGG:mac:MA0728 OMA:PAFENTT
ProtClustDB:CLSK281490 BioCyc:MACE188937:GI2O-796-MONOMER
Uniprot:Q8TSR7
Length = 580
Score = 170 (64.9 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 60/208 (28%), Positives = 91/208 (43%)
Query: 63 VAHNVDEVEKFFKETIENRDEGIVLKDLGSK--WEPGDRSGKWLKLKPEYIRAGSD-LDV 119
V N++E+E FF ET+E EGIV K + S +E G RS WLK K EY + D+
Sbjct: 382 VTENIEELEDFFNETVEKGLEGIVAKSMSSNSVYEAGKRSWLWLKWKQEYSEGMRETFDL 441
Query: 120 LIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKP 179
+++ L A+ ++F +F +VGTG ++ + + + + L
Sbjct: 442 VVVGSYYGKGKRKGSFGALLCAVLNEEE-----QQFETFTKVGTGFTEADAEEINSLLSA 496
Query: 180 YFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILS--IT-SDIRTIRSEVFSAPY 236
+ E PK V PD++IE +L IT S T
Sbjct: 497 HTVS-EAPKN-------VIIKKGMLPDIFIEPAVVIEVLGSEITNSPGHTAGEGEEETGL 548
Query: 237 SLRFPRIDRVRYDKPWHDCLDVQSFVEL 264
+LRFPR R+RYD+ D V+ +L
Sbjct: 549 ALRFPRFLRIRYDRAPFDATTVREIRDL 576
>UNIPROTKB|H9L029 [details] [associations]
symbol:LIG1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA
ligase (ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0051103 "DNA
ligation involved in DNA repair" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS50160 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556
EMBL:AADN02065151 EMBL:AADN02065152 EMBL:AADN02065153
Ensembl:ENSGALT00000021833 Uniprot:H9L029
Length = 654
Score = 166 (63.5 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 62/212 (29%), Positives = 94/212 (44%)
Query: 61 SLVAHNVDEVEKFFKETIENRDEGIVLKDLG--SKWEPGDRSGKWLKLKPEYIRA-GSDL 117
S+ + DEV F + I+ EG+++K L + +E RS KWLKLK +Y+ G L
Sbjct: 438 SMDTRSADEVSDFLDKAIKASCEGLMVKTLEVEATYEIAKRSHKWLKLKKDYLDGLGDTL 497
Query: 118 DVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKL 177
D+++I FL+A + + + + S C++GTG ++E L+ L
Sbjct: 498 DLVVIGAYLGKGKRAGIYGGFLLACYDEESEE-----YQSICKIGTGFTEESLEKHYNFL 552
Query: 178 KPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPE----KSIILSITSDIRTIRSEVFS 233
K E+ P +Y+ N PD W+ + + K LSI+ R V
Sbjct: 553 K------EHVLTQPRPYYRWDN--AVAPDRWLAAVQVWEVKCGDLSISPVYRAAVGLVDE 604
Query: 234 AP-YSLRFPRIDRVRYDKPWHDCLDVQSFVEL 264
SLRFPR RVR DK + EL
Sbjct: 605 DKGISLRFPRFLRVRGDKKPEEATSSTQVAEL 636
>UNIPROTKB|H9L3I6 [details] [associations]
symbol:LIG1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA
ligase (ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IEA] [GO:0042542 "response to hydrogen peroxide"
evidence=IEA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS50160 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
OMA:AQVACLY GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556
EMBL:AADN02065151 EMBL:AADN02065152 EMBL:AADN02065153
Ensembl:ENSGALT00000040526 Uniprot:H9L3I6
Length = 661
Score = 166 (63.5 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 62/212 (29%), Positives = 94/212 (44%)
Query: 61 SLVAHNVDEVEKFFKETIENRDEGIVLKDLG--SKWEPGDRSGKWLKLKPEYIRA-GSDL 117
S+ + DEV F + I+ EG+++K L + +E RS KWLKLK +Y+ G L
Sbjct: 442 SMDTRSADEVSDFLDKAIKASCEGLMVKTLEVEATYEIAKRSHKWLKLKKDYLDGLGDTL 501
Query: 118 DVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKL 177
D+++I FL+A + + + + S C++GTG ++E L+ L
Sbjct: 502 DLVVIGAYLGKGKRAGIYGGFLLACYDEESEE-----YQSICKIGTGFTEESLEKHYNFL 556
Query: 178 KPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPE----KSIILSITSDIRTIRSEVFS 233
K E+ P +Y+ N PD W+ + + K LSI+ R V
Sbjct: 557 K------EHVLTQPRPYYRWDN--AVAPDRWLAAVQVWEVKCGDLSISPVYRAAVGLVDE 608
Query: 234 AP-YSLRFPRIDRVRYDKPWHDCLDVQSFVEL 264
SLRFPR RVR DK + EL
Sbjct: 609 DKGISLRFPRFLRVRGDKKPEEATSSTQVAEL 640
>UNIPROTKB|F1M624 [details] [associations]
symbol:Lig1 "DNA ligase" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0051103 "DNA
ligation involved in DNA repair" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 RGD:621424
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 GeneTree:ENSGT00700000104556 IPI:IPI00950231
Ensembl:ENSRNOT00000019799 ArrayExpress:F1M624 Uniprot:F1M624
Length = 912
Score = 167 (63.8 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 57/198 (28%), Positives = 92/198 (46%)
Query: 61 SLVAHNVDEVEKFFKETIENRDEGIVLK--DLGSKWEPGDRSGKWLKLKPEYIRA-GSDL 117
SL +++++ +F ++++++ EG+++K D+ + +E RS WLKLK +Y+ G L
Sbjct: 692 SLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLEGVGDTL 751
Query: 118 DVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKL 177
D+++I FL+A A D + C++GTG SDEEL+ +
Sbjct: 752 DLVVIGAYLGRGKRAGRYGGFLLA-----AYDEESEELQAICKLGTGFSDEELEEHHQSM 806
Query: 178 KPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPE----KSIILSITSDIRTIRSEVFS 233
+ P P Y V + PD W++ K LS++ R V
Sbjct: 807 QALL----LPTPRP---Y-VRIDGAVAPDHWLDPSVVWEVKCADLSLSPIYPAARGLVDK 858
Query: 234 AP-YSLRFPRIDRVRYDK 250
SLRFPR RVR DK
Sbjct: 859 EKGISLRFPRFIRVREDK 876
>UNIPROTKB|F1M8E6 [details] [associations]
symbol:Lig1 "DNA ligase" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0051103 "DNA
ligation involved in DNA repair" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 RGD:621424
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 IPI:IPI00553920 Ensembl:ENSRNOT00000064178
ArrayExpress:F1M8E6 Uniprot:F1M8E6
Length = 913
Score = 167 (63.8 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 57/198 (28%), Positives = 92/198 (46%)
Query: 61 SLVAHNVDEVEKFFKETIENRDEGIVLK--DLGSKWEPGDRSGKWLKLKPEYIRA-GSDL 117
SL +++++ +F ++++++ EG+++K D+ + +E RS WLKLK +Y+ G L
Sbjct: 693 SLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLEGVGDTL 752
Query: 118 DVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKL 177
D+++I FL+A A D + C++GTG SDEEL+ +
Sbjct: 753 DLVVIGAYLGRGKRAGRYGGFLLA-----AYDEESEELQAICKLGTGFSDEELEEHHQSM 807
Query: 178 KPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPE----KSIILSITSDIRTIRSEVFS 233
+ P P Y V + PD W++ K LS++ R V
Sbjct: 808 QALL----LPTPRP---Y-VRIDGAVAPDHWLDPSVVWEVKCADLSLSPIYPAARGLVDK 859
Query: 234 AP-YSLRFPRIDRVRYDK 250
SLRFPR RVR DK
Sbjct: 860 EKGISLRFPRFIRVREDK 877
>RGD|621424 [details] [associations]
symbol:Lig1 "ligase I, DNA, ATP-dependent" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003909
"DNA ligase activity" evidence=ISO;IDA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IBA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005694
"chromosome" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006260 "DNA replication" evidence=ISO]
[GO:0006273 "lagging strand elongation" evidence=IBA] [GO:0006281
"DNA repair" evidence=ISO;IDA] [GO:0006289 "nucleotide-excision
repair" evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=ISO] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0042542 "response to hydrogen peroxide" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051103 "DNA
ligation involved in DNA repair" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=ISO] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 RGD:621424 GO:GO:0005739
GO:GO:0005524 GO:GO:0005634 GO:GO:0005694 GO:GO:0051301
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0007049
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006273 eggNOG:COG1793 HOGENOM:HOG000036006 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 HOVERGEN:HBG005514 OrthoDB:EOG4RBQJ6
EMBL:AF276774 IPI:IPI00200072 UniGene:Rn.20467
ProteinModelPortal:Q9JHY8 SMR:Q9JHY8 STRING:Q9JHY8
PhosphoSite:Q9JHY8 PRIDE:Q9JHY8 UCSC:RGD:621424 InParanoid:Q9JHY8
NextBio:614997 ArrayExpress:Q9JHY8 Genevestigator:Q9JHY8
GermOnline:ENSRNOG00000014193 Uniprot:Q9JHY8
Length = 918
Score = 167 (63.8 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 56/198 (28%), Positives = 93/198 (46%)
Query: 61 SLVAHNVDEVEKFFKETIENRDEGIVLK--DLGSKWEPGDRSGKWLKLKPEYIRA-GSDL 117
SL +++++ +F ++++++ EG+++K D+ + +E RS WLKLK +Y+ G L
Sbjct: 698 SLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLEGVGDTL 757
Query: 118 DVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKL 177
D+++I FL+A A D + C++GTG SDEEL+ +
Sbjct: 758 DLVVIGAYLGRGKRPGRYGGFLLA-----AYDEESEELAAICKLGTGFSDEELEEHHQNM 812
Query: 178 KPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESP----EKSIILSITSDIRTIRSEVFS 233
+ P P Y V + P+ W++ K L+++ R R V
Sbjct: 813 QALL----LPTPRP---Y-VRIDGAVAPNHWLDPSIVWEVKCADLTLSPIYRAARGMVDK 864
Query: 234 AP-YSLRFPRIDRVRYDK 250
SLRFPR RVR DK
Sbjct: 865 EKGISLRFPRFIRVREDK 882
>UNIPROTKB|I3L9T2 [details] [associations]
symbol:I3L9T2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA] InterPro:IPR000977 InterPro:IPR012309
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS50160 InterPro:IPR001357 GO:GO:0005524
GO:GO:0006260 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003910 GO:GO:0051103 TIGRFAMs:TIGR00574
GeneTree:ENSGT00700000104500 EMBL:FP312781
Ensembl:ENSSSCT00000023206 OMA:FRISKEH Uniprot:I3L9T2
Length = 390
Score = 159 (61.0 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 54/206 (26%), Positives = 96/206 (46%)
Query: 67 VDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGS---DLDVLIIX 123
VD + + +E +E G+VLKD+ +EPG R WLK+K +Y+ G+ D++++
Sbjct: 38 VDMINRVIREGLE----GLVLKDVKGTYEPGKRH--WLKVKKDYLNEGAMADTADLVVLG 91
Query: 124 XXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRK 183
++ FL+ + P + +++ + + G D L + T+L +
Sbjct: 92 AFYGQGSKGGMMSIFLMGCYD---PSS--QKWCTVTKCAGGHDDATLARLQTELD-MVKI 145
Query: 184 YEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAP-YSLRFPR 242
+ P + P + ++ N PD + P+K+ + IT RSE +A S+RFPR
Sbjct: 146 SKDPSKIP-GWLKI--NKIYYPDFIVPDPKKAAVWEITG-AEFSRSEAHTADGISIRFPR 201
Query: 243 IDRVRYDKPWHDCLDVQSFVELVHSS 268
R+R DK W ++ EL S
Sbjct: 202 CTRIRDDKDWKSATNLPQLKELYQLS 227
>UNIPROTKB|Q24FD9 [details] [associations]
symbol:TTHERM_00865240 "DNA ligase" species:312017
"Tetrahymena thermophila SB210" [GO:0003910 "DNA ligase (ATP)
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006266 "DNA ligation" evidence=IBA] [GO:0006273
"lagging strand elongation" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006289
GO:GO:0006273 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 KO:K01971 EMBL:GG662285
RefSeq:XP_001026764.1 EnsemblProtists:EAS06519 GeneID:7839837
KEGG:tet:TTHERM_00865240 Uniprot:Q24FD9
Length = 635
Score = 162 (62.1 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 61/198 (30%), Positives = 94/198 (47%)
Query: 63 VAHNVDEVEKFFKETIENRDEGIVLKDLGSK--WEPGDRSGKWLKLKPEYIRAG-SD-LD 118
+ + DE++K K+ I+ ++EG ++K L S ++ R+ +W KLK + + G +D D
Sbjct: 421 IQKDFDELKKLVKQYIDQKEEGAMVKSLDSNTFYDNNGRT-QWAKLKKQVLSGGLADTFD 479
Query: 119 VLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLK 178
V+ I +L+A D + +++ C++GTG SD+ L +LK
Sbjct: 480 VIPIAAYYGKGKRSGVYGSYLLACY-----DDKKKEYVALCKIGTGFSDQFLQDSTDRLK 534
Query: 179 PYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEK-----SIILSITSDIRTIRSEVFS 233
+K K P Y V K PDVW + + S LS +S I TI +S
Sbjct: 535 ---QKVCSQK---PKEYSVHRTFK--PDVWFQKDAEVWEVESDSLS-SSPIYTIGKMNYS 585
Query: 234 AP-YSLRFPRIDRVRYDK 250
SLRFPR RVR DK
Sbjct: 586 DNGISLRFPRFLRVRDDK 603
>MGI|MGI:101789 [details] [associations]
symbol:Lig1 "ligase I, DNA, ATP-dependent" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003909 "DNA ligase
activity" evidence=ISO] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IBA;IDA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0006260
"DNA replication" evidence=IMP] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006281 "DNA repair" evidence=ISO;IMP] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IMP] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0016874 "ligase
activity" evidence=IEA] [GO:0042542 "response to hydrogen peroxide"
evidence=IMP] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 MGI:MGI:101789
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0051301 GO:GO:0046872 GO:GO:0003677 GO:GO:0007049
GO:GO:0006310 GO:GO:0042542 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006303 GO:GO:0006273 eggNOG:COG1793
KO:K10747 GO:GO:0003910 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 CTD:3978 HOVERGEN:HBG005514 EMBL:U04674
EMBL:U19604 IPI:IPI00473314 PIR:I48921 RefSeq:NP_034845.2
UniGene:Mm.288179 UniGene:Mm.421129 ProteinModelPortal:P37913
SMR:P37913 STRING:P37913 PhosphoSite:P37913 PaxDb:P37913
PRIDE:P37913 GeneID:16881 KEGG:mmu:16881 InParanoid:P37913
NextBio:290882 CleanEx:MM_LIG1 Genevestigator:P37913
GermOnline:ENSMUSG00000056394 Uniprot:P37913
Length = 916
Score = 163 (62.4 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 58/198 (29%), Positives = 91/198 (45%)
Query: 61 SLVAHNVDEVEKFFKETIENRDEGIVLK--DLGSKWEPGDRSGKWLKLKPEYIRA-GSDL 117
SL + +++ +F ++++++ EG+++K D+ + +E RS WLKLK +Y+ G L
Sbjct: 696 SLDTKDTEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTL 755
Query: 118 DVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKL 177
D+++I FL+A A D + C++GTG SDEEL+ L
Sbjct: 756 DLVVIGAYLGRGKRAGRYGGFLLA-----AYDEESEELQAICKLGTGFSDEELEEHHQSL 810
Query: 178 KPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESP----EKSIILSITSDIRTIRSEVFS 233
+ P P Y V + PD W++ K LS++ R V
Sbjct: 811 QALV----LPTPRP---Y-VRIDGAVAPDHWLDPSIVWEVKCADLSLSPIYPAARGLVDK 862
Query: 234 AP-YSLRFPRIDRVRYDK 250
SLRFPR RVR DK
Sbjct: 863 EKGISLRFPRFIRVRKDK 880
>RGD|1309875 [details] [associations]
symbol:Lig3 "ligase III, DNA, ATP-dependent" species:10116
"Rattus norvegicus" [GO:0000794 "condensed nuclear chromosome"
evidence=ISO] [GO:0000795 "synaptonemal complex" evidence=IEA;ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003909 "DNA ligase activity"
evidence=ISO] [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO;IBA] [GO:0005694 "chromosome" evidence=IBA]
[GO:0005739 "mitochondrion" evidence=IBA] [GO:0006266 "DNA
ligation" evidence=IBA] [GO:0006273 "lagging strand elongation"
evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IEA;ISO] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043504 "mitochondrial DNA repair" evidence=IEA;ISO]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IEA;ISO] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IEA] [GO:0033151 "V(D)J recombination" evidence=ISO]
InterPro:IPR000977 InterPro:IPR001510 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF00645 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00347 PROSITE:PS00697 PROSITE:PS50064 PROSITE:PS50160
RGD:1309875 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
GO:GO:0008270 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 KO:K10776 CTD:3980 HOGENOM:HOG000007653
HOVERGEN:HBG005515 Gene3D:3.30.1740.10 GeneTree:ENSGT00700000104500
EMBL:BC085959 IPI:IPI00565239 RefSeq:NP_001012011.1
UniGene:Rn.230056 SMR:Q5U2M4 STRING:Q5U2M4
Ensembl:ENSRNOT00000055982 GeneID:303369 KEGG:rno:303369
NextBio:651212 Genevestigator:Q5U2M4 Uniprot:Q5U2M4
Length = 943
Score = 162 (62.1 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 62/236 (26%), Positives = 112/236 (47%)
Query: 37 VHVYMLSQLRSQIMAADQTGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEP 96
+H M+ ++R++IM ++ S +A D + + +E +E G+VLKD+ +EP
Sbjct: 619 LHDNMV-EIRNRIMFSEMKQVTKASDLA---DMINRVIREGLE----GLVLKDVKGTYEP 670
Query: 97 GDRSGKWLKLKPEYIRAGS---DLDVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPR 153
G R WLK+K +Y+ G+ D++++ ++ FL+ + PD+ +
Sbjct: 671 GKRH--WLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYD---PDS--Q 723
Query: 154 RFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPE 213
++ + + G D L A + K + + P + P S+ ++ N PD + P+
Sbjct: 724 KWCTVTKCAGGHDDATL-ARLQKELDMVKISKDPSKIP-SWLKI--NKIYYPDFIVPDPK 779
Query: 214 KSIILSITSDIRTIRSEVFSAP-YSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSS 268
K+ + IT RSE +A S+RFPR R+R DK W ++ EL S
Sbjct: 780 KAAVWEITG-AEFSRSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLS 834
>UNIPROTKB|D4A2K2 [details] [associations]
symbol:Lig3 "DNA ligase" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 RGD:1309875 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OrthoDB:EOG44BB1K Gene3D:3.30.1740.10
IPI:IPI00563728 PRIDE:D4A2K2 Ensembl:ENSRNOT00000047849
ArrayExpress:D4A2K2 Uniprot:D4A2K2
Length = 955
Score = 162 (62.1 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 62/236 (26%), Positives = 112/236 (47%)
Query: 37 VHVYMLSQLRSQIMAADQTGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEP 96
+H M+ ++R++IM ++ S +A D + + +E +E G+VLKD+ +EP
Sbjct: 623 LHDNMV-EIRNRIMFSEMKQVTKASDLA---DMINRVIREGLE----GLVLKDVKGTYEP 674
Query: 97 GDRSGKWLKLKPEYIRAGS---DLDVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPR 153
G R WLK+K +Y+ G+ D++++ ++ FL+ + PD+ +
Sbjct: 675 GKRH--WLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYD---PDS--Q 727
Query: 154 RFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPE 213
++ + + G D L A + K + + P + P S+ ++ N PD + P+
Sbjct: 728 KWCTVTKCAGGHDDATL-ARLQKELDMVKISKDPSKIP-SWLKI--NKIYYPDFIVPDPK 783
Query: 214 KSIILSITSDIRTIRSEVFSAP-YSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSS 268
K+ + IT RSE +A S+RFPR R+R DK W ++ EL S
Sbjct: 784 KAAVWEITG-AEFSRSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLS 838
>UNIPROTKB|E2RNT6 [details] [associations]
symbol:LIG3 "DNA ligase" species:9615 "Canis lupus
familiaris" [GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 InterPro:IPR001357 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
Gene3D:3.30.1740.10 GeneTree:ENSGT00700000104500 EMBL:AAEX03006627
Ensembl:ENSCAFT00000029122 Uniprot:E2RNT6
Length = 938
Score = 160 (61.4 bits), Expect = 9.0e-08, P = 9.0e-08
Identities = 64/241 (26%), Positives = 105/241 (43%)
Query: 67 VDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGS--DL-DVLIIX 123
VD + + +E +E G+VLKD+ +EPG R WLK+K +Y+ G+ D+ D++++
Sbjct: 556 VDMINRVIREGLE----GLVLKDVKGTYEPGKRH--WLKVKKDYLNEGAMADMADLVVLG 609
Query: 124 XXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRK 183
++ FL+ + P + +C V T S DA + +L+
Sbjct: 610 AFYGQGSKGGMMSIFLMGCYD---PSSQ-----KWCTV-TKCSGGHDDATLARLQKELDM 660
Query: 184 YEYPKRAP--PSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAP-YSLRF 240
+ K P++ ++ N PD + P+K+ + IT RSE +A S+RF
Sbjct: 661 VKISKDPSKIPNWLKI--NKIYYPDFIVPDPKKAAVWEITG-AEFSRSEAHTADGISIRF 717
Query: 241 PRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNV 300
PR R+R DK W ++ EL S G ++ SS GE V
Sbjct: 718 PRCTRIRDDKDWKSATNLPQLKELYQLSKEKADFAVAAG--EEGSSTTGGSSSGGENGGV 775
Query: 301 S 301
S
Sbjct: 776 S 776
>UNIPROTKB|J9P597 [details] [associations]
symbol:LIG3 "DNA ligase" species:9615 "Canis lupus
familiaris" [GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0051103 "DNA ligation involved in DNA repair" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 InterPro:IPR001357 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574 OMA:WSETDLL
Gene3D:3.30.1740.10 GeneTree:ENSGT00700000104500 EMBL:AAEX03006627
Ensembl:ENSCAFT00000048097 Uniprot:J9P597
Length = 957
Score = 160 (61.4 bits), Expect = 9.3e-08, P = 9.3e-08
Identities = 64/241 (26%), Positives = 105/241 (43%)
Query: 67 VDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGS--DL-DVLIIX 123
VD + + +E +E G+VLKD+ +EPG R WLK+K +Y+ G+ D+ D++++
Sbjct: 610 VDMINRVIREGLE----GLVLKDVKGTYEPGKRH--WLKVKKDYLNEGAMADMADLVVLG 663
Query: 124 XXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRK 183
++ FL+ + P + +C V T S DA + +L+
Sbjct: 664 AFYGQGSKGGMMSIFLMGCYD---PSSQ-----KWCTV-TKCSGGHDDATLARLQKELDM 714
Query: 184 YEYPKRAP--PSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAP-YSLRF 240
+ K P++ ++ N PD + P+K+ + IT RSE +A S+RF
Sbjct: 715 VKISKDPSKIPNWLKI--NKIYYPDFIVPDPKKAAVWEITG-AEFSRSEAHTADGISIRF 771
Query: 241 PRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNV 300
PR R+R DK W ++ EL S G ++ SS GE V
Sbjct: 772 PRCTRIRDDKDWKSATNLPQLKELYQLSKEKADFAVAAG--EEGSSTTGGSSSGGENGGV 829
Query: 301 S 301
S
Sbjct: 830 S 830
>UNIPROTKB|D4A837 [details] [associations]
symbol:Lig3 "DNA ligase" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003910 "DNA ligase
(ATP) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 InterPro:IPR001357 RGD:1309875
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0008270 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 Gene3D:3.30.1740.10 IPI:IPI00370404
Ensembl:ENSRNOT00000029555 ArrayExpress:D4A837 Uniprot:D4A837
Length = 1014
Score = 162 (62.1 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 62/236 (26%), Positives = 112/236 (47%)
Query: 37 VHVYMLSQLRSQIMAADQTGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEP 96
+H M+ ++R++IM ++ S +A D + + +E +E G+VLKD+ +EP
Sbjct: 623 LHDNMV-EIRNRIMFSEMKQVTKASDLA---DMINRVIREGLE----GLVLKDVKGTYEP 674
Query: 97 GDRSGKWLKLKPEYIRAGS---DLDVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPR 153
G R WLK+K +Y+ G+ D++++ ++ FL+ + PD+ +
Sbjct: 675 GKRH--WLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYD---PDS--Q 727
Query: 154 RFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPE 213
++ + + G D L A + K + + P + P S+ ++ N PD + P+
Sbjct: 728 KWCTVTKCAGGHDDATL-ARLQKELDMVKISKDPSKIP-SWLKI--NKIYYPDFIVPDPK 783
Query: 214 KSIILSITSDIRTIRSEVFSAP-YSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSS 268
K+ + IT RSE +A S+RFPR R+R DK W ++ EL S
Sbjct: 784 KAAVWEITG-AEFSRSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLS 838
Score = 48 (22.0 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 526 YDVNFNS-LTESFT-AREKHLLWNKKLH----VVRSQWLEDCLAKEQ 566
Y V FN L + F A H+L N+ + +V S+W+ C+ K +
Sbjct: 963 YFVAFNGDLVQEFDMASATHVLGNRDKNTDAQLVSSEWIWACIRKRR 1009
Score = 41 (19.5 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 405 YLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTI 452
YL S ++L+ F+ + D+A +L N D++ D + +
Sbjct: 949 YLPPSTPDFRRLKRYFVAFNGDLVQEFDMASATHVLGNRDKNTDAQLV 996
>DICTYBASE|DDB_G0283857 [details] [associations]
symbol:lig3 "DNA ligase III" species:44689
"Dictyostelium discoideum" [GO:0051103 "DNA ligation involved in
DNA repair" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003910 "DNA ligase (ATP) activity"
evidence=IEA;IBA] [GO:0003909 "DNA ligase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006266 "DNA ligation" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0005634 "nucleus" evidence=IEA;IBA] [GO:0051301
"cell division" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357
dictyBase:DDB_G0283857 Pfam:PF00533 GO:GO:0005524 GO:GO:0005634
GO:GO:0005694 GO:GO:0051301 GenomeReviews:CM000153_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0007049 GO:GO:0006310 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AAFI02000057 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0006289 GO:GO:0006273
eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103 TIGRFAMs:TIGR00574
RefSeq:XP_638847.1 ProteinModelPortal:Q54QM4
EnsemblProtists:DDB0232266 GeneID:8624245 KEGG:ddi:DDB_G0283857
KO:K10776 OMA:INTGAKF ProtClustDB:CLSZ2736577 Uniprot:Q54QM4
Length = 1175
Score = 154 (59.3 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 50/196 (25%), Positives = 91/196 (46%)
Query: 70 VEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIXXXXXX 128
+ + FKE +E G+V+KD S++EPG R W+K+K +YI +D D++ +
Sbjct: 423 LNRVFKEKLE----GLVIKDAMSEYEPGCRH--WIKIKKDYIHGMADSADLIAVGGYYGS 476
Query: 129 XXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPK 188
V FL+ D + + + + GL D + + K+ K
Sbjct: 477 GSMGGLVTVFLMVCY-----DKQNKIYKTVVKASGGLDDNMIAKLQPKVTSTMTKISKEV 531
Query: 189 RAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRY 248
P Y + + PD ++ ++++I I S T +S+ + YS+RFPRI ++R+
Sbjct: 532 SKIP--YWLDCPKQYAPDFIVKDIKQAMIFEIESAEFT-KSDHHTTGYSMRFPRILKIRH 588
Query: 249 DKPWHDCLDVQSFVEL 264
DK + ++ VE+
Sbjct: 589 DKDYKTATTLEELVEI 604
Score = 57 (25.1 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 320 SIFSD-MVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAA 366
SIF + ++F NV ++L + ++ GG S ++N+ TH VA+
Sbjct: 1070 SIFQECIIFLHDNVNDR---ETLKRYIIAYGGDISDSVNDKTTHLVAS 1114
Score = 38 (18.4 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 15/87 (17%), Positives = 36/87 (41%)
Query: 704 EENLETRQTNVVEDLESLDRGKALQQEVVKDFG--KEKQTVRAPDIEMRERYHSKD--SE 759
+ N T T + K ++++ + D +K + + + ++ S D
Sbjct: 617 DNNSPTTTTTTTTTTTTTTSSKLIKKQQLSDDDDDNDKDSKQQQQEPSKLKFVSDDLLDP 676
Query: 760 TTDKQQVDAVQAMLLDMIPSLGMKNEK 786
DK ++ + +L+ + + G+ NEK
Sbjct: 677 FNDKSDDESNKIFILNYVDNSGIWNEK 703
>CGD|CAL0001558 [details] [associations]
symbol:LIG4 species:5476 "Candida albicans" [GO:0003909 "DNA
ligase activity" evidence=IGI;ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0009405 "pathogenesis" evidence=IGI;IMP]
[GO:0044182 "filamentous growth of a population of unicellular
organisms" evidence=IMP] [GO:0032807 "DNA ligase IV complex"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0030447 "filamentous growth" evidence=IMP] [GO:0001302
"replicative cell aging" evidence=IEA] [GO:0006303 "double-strand
break repair via nonhomologous end joining" evidence=IEA]
[GO:0003910 "DNA ligase (ATP) activity" evidence=IEA]
InterPro:IPR000977 InterPro:IPR012308 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 PROSITE:PS00333
PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357 CGD:CAL0001558
Pfam:PF00533 GO:GO:0005524 GO:GO:0005634 GO:GO:0009405
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0044182 eggNOG:COG1793
GO:GO:0003910 GO:GO:0051103 TIGRFAMs:TIGR00574 KO:K10777
EMBL:X95001 EMBL:AACQ01000088 EMBL:AACQ01000087 RefSeq:XP_715274.1
RefSeq:XP_715339.1 ProteinModelPortal:P52496 STRING:P52496
GeneID:3642986 GeneID:3643043 KEGG:cal:CaO19.13220
KEGG:cal:CaO19.5798 GO:GO:0003909 Uniprot:P52496
Length = 928
Score = 167 (63.8 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 60/267 (22%), Positives = 114/267 (42%)
Query: 68 DEVEKFFKETIENRDEGIVLKDLGSKWE-PGDRSGKWLKLKPEYI-RAGSDLDVLIIXXX 125
+++E+ +E + +R EG+VLK++ SK+E G R+ W+K+KPEY+ + G +LD+++I
Sbjct: 454 EDIERAIREVVSSRCEGLVLKNVQSKYEIDGFRNPDWIKVKPEYLEKFGENLDLVVIGKS 513
Query: 126 XXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYE 185
++ L + D + SFC G+ EE D + + K +
Sbjct: 514 PAIKNS------YMCGL--KSVTDGV---YYSFCTCANGIEIEEFDKIERLTHGKWIKTD 562
Query: 186 YPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITS-DIRTIRSEVFSAPYSLRFPRID 244
PP + + P WI P S++L I + I T ++ +L
Sbjct: 563 VAM--PPE--SLIKFGTKIPTFWIH-PSDSLVLEIRARSIDTRAGTSYAVGSTLHNNHCR 617
Query: 245 RVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVP 304
++R DK +C+ +Q + + +N K L + + + + K V +
Sbjct: 618 KIREDKSIDECVTLQEYTHI--KANYINDLNKAQTALGKKREPVYSLDNESKLKKVKVES 675
Query: 305 SHF------LQTDVSDIKGETSIFSDM 325
F + +D + GE + +M
Sbjct: 676 DLFSGIEFLIMSDKREADGEVTTIEEM 702
Score = 41 (19.5 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 12/61 (19%), Positives = 33/61 (54%)
Query: 504 HGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLA 563
+GGK+ N++ AT+ ++ + ++ +S ++L +K + +V+ W+ +C+
Sbjct: 709 YGGKIVNSVDLATNYQIMVITERELPVSS---------QYL--SKGIDLVKPIWIYECIK 757
Query: 564 K 564
+
Sbjct: 758 R 758
>UNIPROTKB|P52496 [details] [associations]
symbol:LIG4 "DNA ligase 4" species:237561 "Candida albicans
SC5314" [GO:0003909 "DNA ligase activity" evidence=IGI;ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0009405 "pathogenesis"
evidence=IGI;IMP] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0044182 "filamentous growth of a population of unicellular
organisms" evidence=IMP] InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012310 InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 InterPro:IPR001357
CGD:CAL0001558 Pfam:PF00533 GO:GO:0005524 GO:GO:0005634
GO:GO:0009405 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0044182
eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103 TIGRFAMs:TIGR00574
KO:K10777 EMBL:X95001 EMBL:AACQ01000088 EMBL:AACQ01000087
RefSeq:XP_715274.1 RefSeq:XP_715339.1 ProteinModelPortal:P52496
STRING:P52496 GeneID:3642986 GeneID:3643043 KEGG:cal:CaO19.13220
KEGG:cal:CaO19.5798 GO:GO:0003909 Uniprot:P52496
Length = 928
Score = 167 (63.8 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 60/267 (22%), Positives = 114/267 (42%)
Query: 68 DEVEKFFKETIENRDEGIVLKDLGSKWE-PGDRSGKWLKLKPEYI-RAGSDLDVLIIXXX 125
+++E+ +E + +R EG+VLK++ SK+E G R+ W+K+KPEY+ + G +LD+++I
Sbjct: 454 EDIERAIREVVSSRCEGLVLKNVQSKYEIDGFRNPDWIKVKPEYLEKFGENLDLVVIGKS 513
Query: 126 XXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYE 185
++ L + D + SFC G+ EE D + + K +
Sbjct: 514 PAIKNS------YMCGL--KSVTDGV---YYSFCTCANGIEIEEFDKIERLTHGKWIKTD 562
Query: 186 YPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITS-DIRTIRSEVFSAPYSLRFPRID 244
PP + + P WI P S++L I + I T ++ +L
Sbjct: 563 VAM--PPE--SLIKFGTKIPTFWIH-PSDSLVLEIRARSIDTRAGTSYAVGSTLHNNHCR 617
Query: 245 RVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSIVP 304
++R DK +C+ +Q + + +N K L + + + + K V +
Sbjct: 618 KIREDKSIDECVTLQEYTHI--KANYINDLNKAQTALGKKREPVYSLDNESKLKKVKVES 675
Query: 305 SHF------LQTDVSDIKGETSIFSDM 325
F + +D + GE + +M
Sbjct: 676 DLFSGIEFLIMSDKREADGEVTTIEEM 702
Score = 41 (19.5 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 12/61 (19%), Positives = 33/61 (54%)
Query: 504 HGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLA 563
+GGK+ N++ AT+ ++ + ++ +S ++L +K + +V+ W+ +C+
Sbjct: 709 YGGKIVNSVDLATNYQIMVITERELPVSS---------QYL--SKGIDLVKPIWIYECIK 757
Query: 564 K 564
+
Sbjct: 758 R 758
>UNIPROTKB|F1MQY1 [details] [associations]
symbol:LIG3 "DNA ligase" species:9913 "Bos taurus"
[GO:0045910 "negative regulation of DNA recombination"
evidence=IEA] [GO:0043504 "mitochondrial DNA repair" evidence=IEA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0000795 "synaptonemal complex" evidence=IEA] [GO:0003910 "DNA
ligase (ATP) activity" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0051103
"DNA ligation involved in DNA repair" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OMA:WSETDLL Gene3D:3.30.1740.10
GeneTree:ENSGT00700000104500 EMBL:DAAA02048465 IPI:IPI00905942
UniGene:Bt.25483 Ensembl:ENSBTAT00000024875 Uniprot:F1MQY1
Length = 943
Score = 154 (59.3 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 53/206 (25%), Positives = 96/206 (46%)
Query: 67 VDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGS---DLDVLIIX 123
VD + + +E +E G+VLKD+ +EPG R WLK+K +Y+ G+ D++++
Sbjct: 645 VDMINRVIQEGLE----GLVLKDVKGTYEPGKRH--WLKVKKDYLNEGAMADTADLVVLG 698
Query: 124 XXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRK 183
++ FL+ + P + +++ + + G D L + T+L +
Sbjct: 699 AFYGQGSKGGMMSIFLMGCYD---PSS--QKWCTVTKCAGGHDDATLARLQTELD-MVKI 752
Query: 184 YEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAP-YSLRFPR 242
+ P + P ++ ++ N PD + P+K+ + IT +SE +A S+RFPR
Sbjct: 753 SKDPSKIP-NWLKI--NKIYYPDFIVPDPKKAAVWEITG-AEFSKSEAHTADGISIRFPR 808
Query: 243 IDRVRYDKPWHDCLDVQSFVELVHSS 268
R+R DK W + EL S
Sbjct: 809 CTRIRDDKDWKSATTLPQLKELYQLS 834
>MGI|MGI:109152 [details] [associations]
symbol:Lig3 "ligase III, DNA, ATP-dependent" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000794 "condensed nuclear chromosome" evidence=IDA]
[GO:0000795 "synaptonemal complex" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003909 "DNA ligase activity"
evidence=ISO] [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006266 "DNA ligation" evidence=IBA]
[GO:0006273 "lagging strand elongation" evidence=IBA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IMP] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016874 "ligase
activity" evidence=IEA] [GO:0043504 "mitochondrial DNA repair"
evidence=IMP] [GO:0045910 "negative regulation of DNA
recombination" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IEA] [GO:0051301 "cell division" evidence=IEA]
InterPro:IPR000977 InterPro:IPR001510 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF00645 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00347 PROSITE:PS00697 PROSITE:PS50064 PROSITE:PS50160
InterPro:IPR001357 EMBL:U66057 MGI:MGI:109152 GO:GO:0005739
GO:GO:0005524 GO:GO:0005634 GO:GO:0051301 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0007049
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0006303
GO:GO:0006289 GO:GO:0045910 GO:GO:0043504 GO:GO:0006273
eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 HOGENOM:HOG000007653
HOVERGEN:HBG005515 OrthoDB:EOG44BB1K Gene3D:3.30.1740.10
EMBL:U66058 EMBL:AL645594 IPI:IPI00124272 IPI:IPI00230471
UniGene:Mm.277136 ProteinModelPortal:P97386 SMR:P97386
IntAct:P97386 STRING:P97386 PhosphoSite:P97386 PaxDb:P97386
PRIDE:P97386 InParanoid:P97386 Bgee:P97386 CleanEx:MM_LIG3
Genevestigator:P97386 GermOnline:ENSMUSG00000020697 GO:GO:0000795
Uniprot:P97386
Length = 1015
Score = 161 (61.7 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 62/236 (26%), Positives = 112/236 (47%)
Query: 37 VHVYMLSQLRSQIMAADQTGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEP 96
+H M+ ++R++IM ++ S +A D + + +E +E G+VLKD+ +EP
Sbjct: 622 LHDNMV-EIRNRIMFSEMKQVTKASDLA---DMINRVIREGLE----GLVLKDVKGTYEP 673
Query: 97 GDRSGKWLKLKPEYIRAGS---DLDVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPR 153
G R WLK+K +Y+ G+ D++++ ++ FL+ + PD+ +
Sbjct: 674 GKRH--WLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYD---PDS--Q 726
Query: 154 RFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPE 213
++ + + G D L A + K + + P + P S+ ++ N PD + P+
Sbjct: 727 KWCTVTKCAGGHDDATL-ARLQKELVMVKISKDPSKIP-SWLKI--NKIYYPDFIVPDPK 782
Query: 214 KSIILSITSDIRTIRSEVFSAP-YSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSS 268
K+ + IT RSE +A S+RFPR R+R DK W ++ EL S
Sbjct: 783 KAAVWEITG-AEFSRSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLS 837
Score = 41 (19.5 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 527 DVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQ 566
+ + S T REK N +V S+W+ C+ K +
Sbjct: 975 EFDMGSATHVLGNREK----NTDAQLVSSEWIWACIRKRR 1010
>UNIPROTKB|P49916 [details] [associations]
symbol:LIG3 "DNA ligase 3" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=IEA] [GO:0051301 "cell division" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000795 "synaptonemal
complex" evidence=IEA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IEA] [GO:0043504 "mitochondrial
DNA repair" evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0003909 "DNA ligase activity"
evidence=IDA] [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006289 "nucleotide-excision repair" evidence=IBA] [GO:0005515
"protein binding" evidence=IPI] [GO:0033151 "V(D)J recombination"
evidence=IDA] [GO:0007131 "reciprocal meiotic recombination"
evidence=TAS] [GO:0007283 "spermatogenesis" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] Reactome:REACT_216
InterPro:IPR000977 InterPro:IPR001510 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
Pfam:PF00645 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679 PROSITE:PS00333
PROSITE:PS00347 PROSITE:PS00697 PROSITE:PS50064 PROSITE:PS50160
InterPro:IPR001357 GO:GO:0005524 GO:GO:0005694 GO:GO:0005654
GO:GO:0051301 GO:GO:0046872 GO:GO:0006284 GO:GO:0003677
GO:GO:0008270 GO:GO:0007283 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
EMBL:CH471147 GO:GO:0007131 GO:GO:0006289 DrugBank:DB00290
GO:GO:0006273 eggNOG:COG1793 GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574 KO:K10776
EMBL:X84740 EMBL:U40671 EMBL:AF491645 EMBL:AC004223 EMBL:AC022903
EMBL:BC068005 IPI:IPI00000156 IPI:IPI00029081 PIR:I37292
RefSeq:NP_002302.2 RefSeq:NP_039269.2 UniGene:Hs.100299 PDB:1IMO
PDB:1IN1 PDB:1UW0 PDB:3L2P PDB:3PC7 PDB:3PC8 PDB:3QVG PDBsum:1IMO
PDBsum:1IN1 PDBsum:1UW0 PDBsum:3L2P PDBsum:3PC7 PDBsum:3PC8
PDBsum:3QVG ProteinModelPortal:P49916 SMR:P49916 IntAct:P49916
MINT:MINT-4531178 STRING:P49916 PhosphoSite:P49916 DMDM:251757259
PaxDb:P49916 PRIDE:P49916 DNASU:3980 Ensembl:ENST00000262327
Ensembl:ENST00000378526 GeneID:3980 KEGG:hsa:3980 UCSC:uc002hik.2
CTD:3980 GeneCards:GC17P033307 HGNC:HGNC:6600 HPA:HPA006723
MIM:600940 neXtProt:NX_P49916 PharmGKB:PA30374 HOGENOM:HOG000007653
HOVERGEN:HBG005515 InParanoid:P49916 OMA:WSETDLL OrthoDB:EOG44BB1K
BRENDA:6.5.1.1 ChiTaRS:LIG3 EvolutionaryTrace:P49916
GenomeRNAi:3980 NextBio:15598 ArrayExpress:P49916 Bgee:P49916
CleanEx:HS_LIG3 Genevestigator:P49916 GermOnline:ENSG00000005156
Gene3D:3.30.1740.10 Uniprot:P49916
Length = 1009
Score = 151 (58.2 bits), Expect = 9.3e-07, P = 9.3e-07
Identities = 51/190 (26%), Positives = 89/190 (46%)
Query: 83 EGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGS---DLDVLIIXXXXXXXXXXXEVAQFL 139
EG+VLKD+ +EPG R WLK+K +Y+ G+ D++++ ++ FL
Sbjct: 655 EGLVLKDVKGTYEPGKRH--WLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFL 712
Query: 140 VALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTN 199
+ + P + +++ + + G D L + +L + + P + P S+ +V
Sbjct: 713 MGCYD---PGS--QKWCTVTKCAGGHDDATLARLQNELD-MVKISKDPSKIP-SWLKV-- 763
Query: 200 NSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAP-YSLRFPRIDRVRYDKPWHDCLDV 258
N PD + P+K+ + IT +SE +A S+RFPR R+R DK W ++
Sbjct: 764 NKIYYPDFIVPDPKKAAVWEITG-AEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNL 822
Query: 259 QSFVELVHSS 268
EL S
Sbjct: 823 PQLKELYQLS 832
>UNIPROTKB|F1P394 [details] [associations]
symbol:LIG3 "DNA ligase" species:9031 "Gallus gallus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0003910 "DNA ligase (ATP)
activity" evidence=IEA] [GO:0000795 "synaptonemal complex"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IEA] [GO:0043504 "mitochondrial DNA repair" evidence=IEA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IEA] InterPro:IPR000977 InterPro:IPR001510
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF00645 Pfam:PF01068 Pfam:PF04675
Pfam:PF04679 PROSITE:PS00333 PROSITE:PS00347 PROSITE:PS00697
PROSITE:PS50064 PROSITE:PS50160 InterPro:IPR001357 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 GO:GO:0008270
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 OMA:WSETDLL Gene3D:3.30.1740.10
GeneTree:ENSGT00700000104500 EMBL:AADN02025943 IPI:IPI00586176
Ensembl:ENSGALT00000003599 Uniprot:F1P394
Length = 900
Score = 150 (57.9 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 50/190 (26%), Positives = 89/190 (46%)
Query: 83 EGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGS---DLDVLIIXXXXXXXXXXXEVAQFL 139
EG+VLKD+ +EPG R WLK+K +Y+ G+ D++++ ++ FL
Sbjct: 564 EGLVLKDIKGNYEPGKRH--WLKVKKDYLNEGAMADTADLVVLGAFYGKGSKGGMMSIFL 621
Query: 140 VALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTN 199
+ + P + ++ + + G D L + T+L + + P + P S+ ++
Sbjct: 622 MGCYD---PKS--EKWCTVTKCAGGHDDATLARLQTELD-MVKISKDPSKIP-SWLKI-- 672
Query: 200 NSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAP-YSLRFPRIDRVRYDKPWHDCLDV 258
N PD + P+K+ + IT ++E +A S+RFPR R+R DK W ++
Sbjct: 673 NKIYYPDFIVPDPKKAPVWEITG-AEFSKAEAHTADGISIRFPRCTRIRDDKDWKTATNL 731
Query: 259 QSFVELVHSS 268
EL S
Sbjct: 732 PQLKELYQLS 741
>UNIPROTKB|Q0IWT4 [details] [associations]
symbol:Os10g0489200 "DNA ligase" species:39947 "Oryza
sativa Japonica Group" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006266 "DNA ligation" evidence=IBA] [GO:0006273
"lagging strand elongation" evidence=IBA] [GO:0006289
"nucleotide-excision repair" evidence=IBA] InterPro:IPR000977
InterPro:IPR012308 InterPro:IPR012309 InterPro:IPR012310
InterPro:IPR016059 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005739
GO:GO:0005524 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
GO:GO:0006310 EMBL:AP008216 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273 KO:K10747 GO:GO:0003910
GO:GO:0051103 Gene3D:1.10.3260.10 SUPFAM:SSF117018
TIGRFAMs:TIGR00574 RefSeq:NP_001064917.1 UniGene:Os.50787
STRING:Q0IWT4 PRIDE:Q0IWT4 GeneID:4348965 KEGG:osa:4348965
Gramene:Q0IWT4 ProtClustDB:CLSN2919973 Uniprot:Q0IWT4
Length = 828
Score = 147 (56.8 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 32/114 (28%), Positives = 60/114 (52%)
Query: 61 SLVAHNVDEVEKFFKETIENRDEGIVLK--DLGSKWEPGDRSGKWLKLKPEYIRA-GSDL 117
S+ +++++E++KF + + EG+++K D + +EP RS WLKLK +Y+ + G L
Sbjct: 699 SITSNDLEEIQKFLDTAVNSSCEGLIIKTLDKDATYEPAKRSNNWLKLKKDYMDSIGDSL 758
Query: 118 DVLIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELD 171
D++ I FL+A D + + C +GTG S+++L+
Sbjct: 759 DLVPIAAFHGRGKRTGVYGSFLLACY-----DEQNEEYQTICNIGTGFSEQQLE 807
>UNIPROTKB|O67398 [details] [associations]
symbol:lig "Probable DNA ligase" species:224324 "Aquifex
aeolicus VF5" [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006289 "nucleotide-excision repair" evidence=IBA]
HAMAP:MF_00407 InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
InterPro:IPR022865 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0005694 GO:GO:0051301 GO:GO:0046872 GO:GO:0003677
GO:GO:0007049 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793
KO:K10747 OMA:AQVACLY GO:GO:0003910 GO:GO:0051103
Gene3D:1.10.3260.10 SUPFAM:SSF117018 TIGRFAMs:TIGR00574
EMBL:AE000657 PIR:D70421 RefSeq:NP_213963.1
ProteinModelPortal:O67398 SMR:O67398 GeneID:1192929
GenomeReviews:AE000657_GR KEGG:aae:aq_1394 PATRIC:20959956
HOGENOM:HOG000036008 ProtClustDB:PRK01109
BioCyc:AAEO224324:GJBH-1004-MONOMER Uniprot:O67398
Length = 584
Score = 145 (56.1 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 62/215 (28%), Positives = 97/215 (45%)
Query: 63 VAHNVDEVEKFFKETIENRDEGIVLKDLG--SKWEPGDRSGKWLKLKPEYIRAGSD-LDV 119
+ NV+++E FF + IE EG+V K L S ++ G R W+K K +Y +D LD+
Sbjct: 378 IVDNVEDLENFFYQAIEEGCEGLVCKSLAPNSIYQAGKRGFLWIKYKRDYKSVLADTLDL 437
Query: 120 LIIXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKP 179
+++ L+A + P D F + +VGTG ++++ + L P
Sbjct: 438 VVVGGFYGKGQRKGTFGSLLMACYD-PESDM----FKTVTKVGTGFTEDDFKKLEEILMP 492
Query: 180 YFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYS-- 237
RK + R P +V NS D+W E P ++L IT T+ S V + +
Sbjct: 493 --RKLNH--RHP----RV--NSILEADMWFE-PY--LVLEITGAELTL-SPVHTCGWGKV 538
Query: 238 -------LRFPRID-RVRYDKPWHDCLDVQSFVEL 264
LRFPR R R+DK D Q +E+
Sbjct: 539 SPNRGIGLRFPRFTGRYRFDKRPEDATTEQEIIEM 573
>UNIPROTKB|Q0JKB6 [details] [associations]
symbol:Os01g0685500 "Os01g0685500 protein" species:39947
"Oryza sativa Japonica Group" [GO:0003910 "DNA ligase (ATP)
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006289 "nucleotide-excision repair" evidence=IBA]
InterPro:IPR012309 InterPro:IPR012310 Pfam:PF01068 Pfam:PF04679
PROSITE:PS50160 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AP008207 GO:GO:0006289 GO:GO:0006273 KO:K10747 GO:GO:0003910
RefSeq:NP_001043898.1 UniGene:Os.55232 ProteinModelPortal:Q0JKB6
GeneID:4324149 KEGG:osa:4324149 Gramene:Q0JKB6
ProtClustDB:CLSN2691710 Uniprot:Q0JKB6
Length = 318
Score = 139 (54.0 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 52/197 (26%), Positives = 86/197 (43%)
Query: 67 VDEVEKFFKETIENRDEGIVLK--DLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIXX 124
++ + FFK ++ EGI+LK D+ + + R WLK+K +Y+ G LD++ I
Sbjct: 109 LERMNTFFKMACQSSCEGIMLKILDVDAGYSASKRCDSWLKVKRDYVGLGDSLDLVPIGA 168
Query: 125 XXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKY 184
+ FL+A P+ Y F S CRV +G SDE ++K ++
Sbjct: 169 WYGNGRKAGWYSPFLMACYN---PE-Y-EEFQSVCRVMSGFSDE----FYKEMKEFYSGD 219
Query: 185 EY-PKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVF-----SAPYSL 238
PK+ P +Y+ + E P++W + + I + + S S+
Sbjct: 220 RILPKK--PVYYK----TDELPELWFSAEQVWEIRGADLTLSPVHHAAIGLVHPSRGISV 273
Query: 239 RFPRIDRVRYDKPWHDC 255
R PR R R D+ DC
Sbjct: 274 RMPRYIRSRPDRSPEDC 290
>UNIPROTKB|A8JIN2 [details] [associations]
symbol:DNL4 "DNA ligase IV" species:3055 "Chlamydomonas
reinhardtii" [GO:0003910 "DNA ligase (ATP) activity" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0006266 "DNA ligation"
evidence=IBA] [GO:0006273 "lagging strand elongation" evidence=IBA]
[GO:0006289 "nucleotide-excision repair" evidence=IBA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IBA] [GO:0032807 "DNA ligase IV complex" evidence=IBA]
InterPro:IPR012308 InterPro:IPR012310 Pfam:PF01068 Pfam:PF04675
PROSITE:PS50160 GO:GO:0005524 GO:GO:0005694 GO:GO:0003677
GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0006303 GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793
GO:GO:0003910 GO:GO:0032807 EMBL:DS496207 RefSeq:XP_001690680.1
EnsemblPlants:EDO96255 GeneID:5716282 KEGG:cre:CHLREDRAFT_205955
BioCyc:CHLAMY:CHLREDRAFT_205955-MONOMER Uniprot:A8JIN2
Length = 831
Score = 120 (47.3 bits), Expect = 5.7e-06, Sum P(3) = 5.7e-06
Identities = 29/92 (31%), Positives = 53/92 (57%)
Query: 39 VYMLSQLRSQIMA-ADQTGEPCW------SLVAHNVDEVEKFF-KETIENRDEGIVLKDL 90
++M Q R +++A A G P S + NV+++ + ++T E R+EG+V+K L
Sbjct: 299 LHMPLQERQELLAQALMPGRPLQQDGRLHSWLCSNVEQLRRLHDQQTREQREEGVVIKSL 358
Query: 91 GSKWEPGDRSGKWLKLKPEYIRAGSDLDVLII 122
+ + P RS W+KLKP+Y+ G + D +++
Sbjct: 359 TAPYRPAARSESWVKLKPDYLTLG-EFDCVVL 389
Score = 76 (31.8 bits), Expect = 5.7e-06, Sum P(3) = 5.7e-06
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 220 ITSDIRTIRSEVFSAPYSLRFPRIDRVRYDK 250
+ +D+R S VF+A +LRFPRI R+R D+
Sbjct: 501 VNADVRLHASHVFAAGCTLRFPRITRLREDR 531
Score = 40 (19.1 bits), Expect = 5.7e-06, Sum P(3) = 5.7e-06
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 552 VVRSQWLEDC 561
++R WLEDC
Sbjct: 755 LLRPAWLEDC 764
>UNIPROTKB|Q8TMT1 [details] [associations]
symbol:lig2 "DNA ligase 2" species:188937 "Methanosarcina
acetivorans C2A" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006266
"DNA ligation" evidence=IBA] [GO:0006273 "lagging strand
elongation" evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] HAMAP:MF_00407 InterPro:IPR000977 InterPro:IPR012308
InterPro:IPR012309 InterPro:IPR012310 InterPro:IPR016059
InterPro:IPR022865 Pfam:PF01068 Pfam:PF04675 Pfam:PF04679
PROSITE:PS00333 PROSITE:PS00697 PROSITE:PS50160 GO:GO:0005524
GO:GO:0005694 GO:GO:0051301 GO:GO:0046872 GO:GO:0003677
GO:GO:0007049 GO:GO:0006310 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006289 GO:GO:0006273 eggNOG:COG1793
KO:K10747 GO:GO:0003910 GO:GO:0051103 Gene3D:1.10.3260.10
SUPFAM:SSF117018 TIGRFAMs:TIGR00574 EMBL:AE010299
GenomeReviews:AE010299_GR RefSeq:NP_617472.1
ProteinModelPortal:Q8TMT1 GeneID:1474460 KEGG:mac:MA2571
OMA:ARVQVHK ProtClustDB:CLSK568925
BioCyc:MACE188937:GI2O-2632-MONOMER Uniprot:Q8TMT1
Length = 568
Score = 133 (51.9 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 33/116 (28%), Positives = 59/116 (50%)
Query: 62 LVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLI 121
++ +++ VEK ++E + EG+++K+ S + PG R WLK KP LD+++
Sbjct: 388 VITGDLELVEKIYREALNAGHEGVMVKNPNSAYSPGKRGKNWLKKKPLM----ETLDLVV 443
Query: 122 IXXXXXXXXXXXEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKL 177
+ + + VA + P+T RF+ +VGTGL+DE+L + L
Sbjct: 444 VGAEWGYGRRANLIGSYSVACYD---PET--SRFLQVGKVGTGLTDEQLKELTEML 494
Score = 54 (24.1 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 216 IILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDK 250
++L I + +S + + ++LRFPR R+R DK
Sbjct: 513 VVLEIAFE-EIQKSPNYDSGFALRFPRFIRIRDDK 546
>UNIPROTKB|A8IAY8 [details] [associations]
symbol:CHLREDRAFT_165757 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0003910 "DNA ligase (ATP) activity"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006266
"DNA ligation" evidence=IBA] [GO:0006273 "lagging strand
elongation" evidence=IBA] [GO:0006289 "nucleotide-excision repair"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IBA] [GO:0032807 "DNA ligase IV
complex" evidence=IBA] InterPro:IPR012308 InterPro:IPR012310
Pfam:PF01068 Pfam:PF04675 PROSITE:PS50160 GO:GO:0005524
GO:GO:0005694 GO:GO:0003677 GO:GO:0006310 InterPro:IPR012340
SUPFAM:SSF50249 eggNOG:COG5076 GO:GO:0006303 GO:GO:0006289
GO:GO:0006273 GO:GO:0003910 GO:GO:0032807 EMBL:DS496115
RefSeq:XP_001702477.1 ProteinModelPortal:A8IAY8
EnsemblPlants:EDP06256 GeneID:5728031 KEGG:cre:CHLREDRAFT_165757
ProtClustDB:CLSN2923912 InterPro:IPR006502 Pfam:PF04720
Uniprot:A8IAY8
Length = 1330
Score = 101 (40.6 bits), Expect = 0.00013, Sum P(4) = 0.00013
Identities = 19/42 (45%), Positives = 31/42 (73%)
Query: 81 RDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLII 122
R+EGIV+K + S + DRSG WLK+KP+Y+ + ++ D ++I
Sbjct: 258 REEGIVVKLVESPYRLNDRSGSWLKVKPDYVDS-TEFDCVVI 298
Score = 69 (29.3 bits), Expect = 0.00013, Sum P(4) = 0.00013
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 160 RVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNN 200
RVGTGL+ E+ + V +L+P + P + PP Y+VT +
Sbjct: 307 RVGTGLNAEQYEYVRERLRPLLIELG-PGQRPPRCYRVTGS 346
Score = 58 (25.5 bits), Expect = 0.00013, Sum P(4) = 0.00013
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 237 SLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNG 270
SLRFPR+ VR DK D V LV + G
Sbjct: 346 SLRFPRVTAVRGDKAPADANSVDELDRLVAARKG 379
Score = 44 (20.5 bits), Expect = 0.00013, Sum P(4) = 0.00013
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 338 LDSLHKMVVENGGTFSMNLNNSVTH---CVAADNKGLKYEAAK 377
+++L VV NGGT + VTH C++ L+ +A+
Sbjct: 589 VEALKAAVVRNGGTVVDMWDERVTHLAHCLSLIRAALERPSAE 631
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.132 0.393 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 824 727 0.00086 121 3 11 22 0.43 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 73
No. of states in DFA: 625 (66 KB)
Total size of DFA: 405 KB (2196 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 62.61u 0.10s 62.71t Elapsed: 00:00:05
Total cpu time: 62.62u 0.10s 62.72t Elapsed: 00:00:05
Start: Tue May 21 02:42:53 2013 End: Tue May 21 02:42:58 2013