BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003386
(824 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LL84|DNLI4_ARATH DNA ligase 4 OS=Arabidopsis thaliana GN=LIG4 PE=1 SV=1
Length = 1219
Score = 811 bits (2095), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/863 (51%), Positives = 573/863 (66%), Gaps = 126/863 (14%)
Query: 55 TGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAG 114
+GEP WS+V H +VE+FFKET+ENRDEGIVLKDL SKWEPGDRSGKW+KLKPEYIRAG
Sbjct: 390 SGEPSWSIVVHAAADVERFFKETVENRDEGIVLKDLESKWEPGDRSGKWMKLKPEYIRAG 449
Query: 115 SDLDVLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVV 174
+DLDVLIIGGYYGSGRRGGEVAQFLVALA+R + YPRRF+SFCRVGTGLSD+EL+ VV
Sbjct: 450 ADLDVLIIGGYYGSGRRGGEVAQFLVALADRAEANVYPRRFMSFCRVGTGLSDDELNTVV 509
Query: 175 TKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSA 234
+KLKPYFRK E+PK+APPSFYQVTN+SKERPDVWI+SPEKSIILSITSDIRTIRSEVF A
Sbjct: 510 SKLKPYFRKNEHPKKAPPSFYQVTNHSKERPDVWIDSPEKSIILSITSDIRTIRSEVFVA 569
Query: 235 PYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRK 294
PYSLRFPRID+VRYDKPWH+CLDVQ+FVELV+SSNGTTQK KE QD+ PK +SS++
Sbjct: 570 PYSLRFPRIDKVRYDKPWHECLDVQAFVELVNSSNGTTQKQKESESTQDN-PKVNKSSKR 628
Query: 295 GEKKNVSIVPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSM 354
GEKKNVS+VPS F+QTDVSDIKG+TSIFS+M+FYFVNVP ++SL++ HKMVVENGG FSM
Sbjct: 629 GEKKNVSLVPSQFIQTDVSDIKGKTSIFSNMIFYFVNVPRSHSLETFHKMVVENGGKFSM 688
Query: 355 NLNNSVTHCVAADNKGLKYEAAKRRGDVIHYSWVLDCCSQKKLLQLQPKYYLHLSDSSKK 414
NLNNSVTHC+AA++ G+KY+AAKR+ DVIH+SWVLDCCS+ K+L L PKY+LHL+D+S+
Sbjct: 689 NLNNSVTHCIAAESSGIKYQAAKRQRDVIHFSWVLDCCSRNKMLPLLPKYFLHLTDASRT 748
Query: 415 KLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIY 474
KLQ+++DEFSD Y+WDLDL +KQ+LSN +SED K+IDYYKKK CP+ +WSC CC+Y
Sbjct: 749 KLQDDIDEFSDSYYWDLDLEGLKQVLSNAKQSEDSKSIDYYKKKLCPEKRWSCLLSCCVY 808
Query: 475 FYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLANATHVVVLSVLGYDVNFNSLT 534
FY ++ LS + E LLG+ +RL LE+ GGKV NNLA+A+H+VVL++ ++F ++
Sbjct: 809 FYPYSQTLSTEEEALLGIMAKRLMLEVLMAGGKVSNNLAHASHLVVLAMAEEPLDFTLVS 868
Query: 535 ESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPTGMQESYLELCEEDLDM 594
+SF+ EK LL K+LHVV S WLE+ L +E+K E Y+L+P M+ES D
Sbjct: 869 KSFSEMEKRLLLKKRLHVVSSHWLEESLQREEKLCEDVYTLRPKYMEES---------DT 919
Query: 595 EEPSSTLETSDKQNVSSFPDGDGKQRGTRGVSPASPKREGKRKRGRPAGGSAKKRKSTVN 654
EE + D V+S K+ PAS K RGR + K+ +S+ N
Sbjct: 920 EESDKS--EHDTTEVASQGSAQTKE-------PASSKIAITSSRGRSNTRAVKRGRSSTN 970
Query: 655 LARRKRPHVRNKPSKIYQNESDESNASDET------------------------------ 684
+R + +PSKI +E++ES+AS+E
Sbjct: 971 SLQRVQRRRGKQPSKISGDETEESDASEEKVSTRLSDIAEETDSFGEAQRNSSRGKCAKR 1030
Query: 685 -----------------EKKEEINREENHEDREMDDE-----------------ENLETR 710
+K +I +E+ E+ E+D EN ETR
Sbjct: 1031 GKSRVGQTQRVQRSRRGKKAAKIGGDESDENDELDGNNNVSADAEEGNAAGRSVENEETR 1090
Query: 711 QTNVVEDLESLDRGKALQ-QEVVKDFGKEKQTVRAPDIEMRERYHSKDSETTDKQQVDAV 769
+ ++ + ES R + +E ++D K +++M+E+ + D +
Sbjct: 1091 EPDIAKYTESQQRDNTVAVEEALQDSRNAK-----TEMDMKEKLQIHE---------DPL 1136
Query: 770 QAMLLDMIPSLGMKNEKTTNPIPKE----------------------ESSSAEPSAEP-- 805
QAML+ M P K +T+N E +++S AE
Sbjct: 1137 QAMLMKMFPIPSQKTTETSNRTTGEYRKANVSGECESSEKRKLDAETDNTSVNAGAESDV 1196
Query: 806 ----TKKKKVSYKDIASKLLKDW 824
KKKKVSY+D+A +LLKDW
Sbjct: 1197 VPPLVKKKKVSYRDVAGELLKDW 1219
>sp|Q7X7E9|DNLI4_ORYSJ Putative DNA ligase 4 OS=Oryza sativa subsp. japonica GN=LIG4 PE=2
SV=2
Length = 1322
Score = 327 bits (837), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 172/272 (63%), Positives = 206/272 (75%), Gaps = 52/272 (19%)
Query: 57 EPCWSLVAHNVDEVEKFFKETIENR----------------------------------D 82
EPCWS++AH++D+VEKFFK+T++NR +
Sbjct: 437 EPCWSILAHSLDDVEKFFKDTVDNRFFPTSPNTDELSNLSISLMIQFRFSDYSICYVLRE 496
Query: 83 EGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVAL 142
EGI+LKDL SKWEPGDRSGKWLKLKP+YI AG+DLDV+IIGGYYGSGRRGGEVAQFLV L
Sbjct: 497 EGIILKDLESKWEPGDRSGKWLKLKPDYIHAGADLDVIIIGGYYGSGRRGGEVAQFLVGL 556
Query: 143 AERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSK 202
A ++YP+RF+SFCRVGTGLSDEELDA+VTKLKP+FRK EYPK+ PP FY+VTN+SK
Sbjct: 557 AVPSDDNSYPKRFLSFCRVGTGLSDEELDALVTKLKPHFRKNEYPKK-PPRFYEVTNHSK 615
Query: 203 ERPDVWIESPEK-----------------SIILSITSDIRTIRSEVFSAPYSLRFPRIDR 245
ERPDVWIESP+K S+I+SITSDIRTI+SEVF+APYSLRFPRI R
Sbjct: 616 ERPDVWIESPDKQSVRFRKHLIYCITKCRSVIISITSDIRTIKSEVFAAPYSLRFPRIQR 675
Query: 246 VRYDKPWHDCLDVQSFVELVHSSNGTTQKGKE 277
+RYDKPWH+CLDVQ+FV++VHSSNGTT + +
Sbjct: 676 LRYDKPWHECLDVQAFVDIVHSSNGTTHRAAD 707
Score = 237 bits (604), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 139/359 (38%), Positives = 216/359 (60%), Gaps = 35/359 (9%)
Query: 346 VENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRGDVIHYSWVLDCCSQKKLLQLQPKYY 405
V+NGG+FSMNLN+SVTHC+AA+ K A R+G +IHYSW+LDCC +K+LL LQPK+
Sbjct: 715 VKNGGSFSMNLNDSVTHCIAAEKK------ATRQGRIIHYSWILDCCKEKRLLHLQPKFD 768
Query: 406 LHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRS-EDPKTIDYYKKKYCPQDK 464
L K EE+D ++D ++WD+D++D+KQ+ SN+DR+ D + +YKKKYC ++
Sbjct: 769 PCLQ--PMHKFPEEIDSYADYFYWDIDISDLKQIFSNMDRAVVDSNMVHHYKKKYCADER 826
Query: 465 WSCFHGCCIYFYHSTEPL-SPDWEVLLGLALRRLKLEISFHGGKVCNNLANATHVVVLSV 523
+ F GCC+YFYH+ PL + D+ V+ LAL+R+K +++ HGG+VC+ LA ATH++++SV
Sbjct: 827 FCFFQGCCVYFYHA--PLVNADYNVISDLALKRVKQDLTMHGGQVCSILAPATHLIIVSV 884
Query: 524 LGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPTGMQES 583
L NF+ L +S E+ L +K+L VV ++WLED + K+ + E YSLKP ++E
Sbjct: 885 LQA-YNFDMLYKSLPPAERRYLHDKRLQVVSNKWLEDSVEKQTRLPETTYSLKPDTLEEI 943
Query: 584 YLELCEEDLDMEEPSSTLETSDKQNVSSFPDGDGKQRGTRGVSPASPKREGKRKRGRPAG 643
+E + ++ + LE ++K + S + RKRGRP+
Sbjct: 944 EIE--RSEETVQPCNDKLEENEKADTSHV-------------------KHAPRKRGRPSS 982
Query: 644 GSAKKRKSTVNLARRKRPHVRNKPSKIYQNESDESNASDETEKKEEINREENHEDREMD 702
+++ K RR R N+ +KI E +ES+ ET ++I +N E+D
Sbjct: 983 SASRTAKPAPRPVRRTRARRGNQHAKIDDVEPEESDHG-ETGLDDQIPDTDNISKMEVD 1040
Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 50/122 (40%), Gaps = 47/122 (38%)
Query: 750 RERYHSKDSETTDK--QQVDAVQAMLLDMIPSLGMKNEKTTN------------------ 789
R+ + S T +K Q VD + AMLLDMIPSLG N
Sbjct: 1201 RDTAETTSSATCEKMEQMVDPLHAMLLDMIPSLGQMKTDVGNRVAEAKAETNPPWVGSST 1260
Query: 790 -----PIPK------------------EESSSAEPSAEPT----KKKKVSYKDIASKLLK 822
P+P+ S+ P+ +PT KKKKVSYKD+A LLK
Sbjct: 1261 SSYVAPVPQASASSASSSGVPAPHAGSSTQSTGVPAPDPTAGAPKKKKVSYKDVAGALLK 1320
Query: 823 DW 824
DW
Sbjct: 1321 DW 1322
>sp|Q5R6L3|DNLI4_PONAB DNA ligase 4 OS=Pongo abelii GN=DNL4 PE=2 SV=1
Length = 911
Score = 230 bits (587), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 156/523 (29%), Positives = 261/523 (49%), Gaps = 34/523 (6%)
Query: 64 AHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLII 122
AH +EV E I+ R+EGI++K S ++P R WLK+KPEY+ D LD+LI+
Sbjct: 408 AHTKNEVIDALNEAIDKREEGIMIKQPLSIYKPDKRGEGWLKIKPEYVSGLMDELDILIV 467
Query: 123 GGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFR 182
GGY+G G RGG ++ FL A+AE+P P P F + RVG+G + +EL + KL Y++
Sbjct: 468 GGYWGKGSRGGMMSHFLCAVAEKPPPGEKPSVFHTLSRVGSGCTMKELYDLGLKLAKYWK 527
Query: 183 KYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPR 242
+ K+APPS E+P+V+IE P S+I+ I + + S+++ +LRFPR
Sbjct: 528 PFH--KKAPPSSILC---GTEKPEVYIE-PCNSVIVQIKA-AEIVPSDMYKTGCTLRFPR 580
Query: 243 IDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSI 302
I+++R DK WH+C+ + +L ++G Y G DD+P++ + + K V
Sbjct: 581 IEKIRDDKEWHECMTLDDLEQLRGKASGKLASKHFYVG-GDDEPQEKKRKAAPKMKKVIG 639
Query: 303 VPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTH 362
+ H +++++ ++IF D+ F ++ + L + E GG N T+
Sbjct: 640 IIEHLKAPNLTNVNKISNIFEDVEFCVMSGTDSQPKPDLENRIAEFGGYIVQNPGPD-TY 698
Query: 363 CVAADNKGLKYE--AAKRRGDVIHYSWVLDCCSQKKLLQLQPKYYLHLSDSSKKKLQEEV 420
CV A +K ++ + + DV+ +W+L+C K + QP + +H+ S+K+ E
Sbjct: 699 CVIAGSKNIRVKNIILSNKHDVVKPAWLLECFKTKSFVPWQPHFMIHMCPSTKEHFAREY 758
Query: 421 DEFSDLYFWDLDLADIKQLLSNVDRS--EDPKTIDYYKKKYCPQDKWSC-----FHGCCI 473
D + D YF D DL +K++ S + S + P+ + + W C F +
Sbjct: 759 DCYGDSYFVDTDLNQLKEVFSGIKNSNEQTPEEMASLIADLEYRYSWDCSPLSMFRRHTV 818
Query: 474 Y--FYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNF 530
Y Y LS E G L LE+ FHG KV + LA +HV++ +F
Sbjct: 819 YLDLYAVINDLSTKNE---GTRLAIKALELRFHGAKVVSCLAEGVSHVIIGEDHSRIADF 875
Query: 531 NSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEY 573
+ +F +K +++ W+ D + K + EE +Y
Sbjct: 876 KAFRRTF---------KRKFKILKESWITDSIDKCELQEENQY 909
>sp|P49917|DNLI4_HUMAN DNA ligase 4 OS=Homo sapiens GN=LIG4 PE=1 SV=2
Length = 911
Score = 228 bits (581), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 154/523 (29%), Positives = 262/523 (50%), Gaps = 34/523 (6%)
Query: 64 AHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLII 122
AH +EV E I+ R+EGI++K S ++P R WLK+KPEY+ D LD+LI+
Sbjct: 408 AHTKNEVIDALNEAIDKREEGIMVKQPLSIYKPDKRGEGWLKIKPEYVSGLMDELDILIV 467
Query: 123 GGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFR 182
GGY+G G RGG ++ FL A+AE+P P P F + RVG+G + +EL + KL Y++
Sbjct: 468 GGYWGKGSRGGMMSHFLCAVAEKPPPGEKPSVFHTLSRVGSGCTMKELYDLGLKLAKYWK 527
Query: 183 KYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPR 242
+ ++APPS E+P+V+IE P S+I+ I + + S+++ +LRFPR
Sbjct: 528 PFH--RKAPPSSILC---GTEKPEVYIE-PCNSVIVQIKA-AEIVPSDMYKTGCTLRFPR 580
Query: 243 IDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSI 302
I+++R DK WH+C+ + +L ++G Y G DD+P++ + + K V
Sbjct: 581 IEKIRDDKEWHECMTLDDLEQLRGKASGKLASKHLYIG-GDDEPQEKKRKAAPKMKKVIG 639
Query: 303 VPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTH 362
+ H +++++ ++IF D+ F ++ + L + E GG N T+
Sbjct: 640 IIEHLKAPNLTNVNKISNIFEDVEFCVMSGTDSQPKPDLENRIAEFGGYIVQNPGPD-TY 698
Query: 363 CVAADNKGLKYE--AAKRRGDVIHYSWVLDCCSQKKLLQLQPKYYLHLSDSSKKKLQEEV 420
CV A ++ ++ + + DV+ +W+L+C K + QP++ +H+ S+K+ E
Sbjct: 699 CVIAGSENIRVKNIILSNKHDVVKPAWLLECFKTKSFVPWQPRFMIHMCPSTKEHFAREY 758
Query: 421 DEFSDLYFWDLDLADIKQLLSNVDRS--EDPKTIDYYKKKYCPQDKWSC-----FHGCCI 473
D + D YF D DL +K++ S + S + P+ + + W C F +
Sbjct: 759 DCYGDSYFIDTDLNQLKEVFSGIKNSNEQTPEEMASLIADLEYRYSWDCSPLSMFRRHTV 818
Query: 474 YF--YHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNF 530
Y Y LS E G L LE+ FHG KV + LA +HV++ +F
Sbjct: 819 YLDSYAVINDLSTKNE---GTRLAIKALELRFHGAKVVSCLAEGVSHVIIGEDHSRVADF 875
Query: 531 NSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEY 573
+ +F +K +++ W+ D + K + EE +Y
Sbjct: 876 KAFRRTF---------KRKFKILKESWVTDSIDKCELQEENQY 909
>sp|Q8BTF7|DNLI4_MOUSE DNA ligase 4 OS=Mus musculus GN=Lig4 PE=2 SV=2
Length = 911
Score = 227 bits (579), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 161/526 (30%), Positives = 259/526 (49%), Gaps = 36/526 (6%)
Query: 64 AHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLII 122
AH EV + I+ R+EGI++K S ++P R WLK+KPEY+ D LDVLI+
Sbjct: 408 AHTKKEVVDALNDAIDKREEGIMVKHPLSIYKPDKRGEGWLKIKPEYVSGLMDELDVLIV 467
Query: 123 GGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFR 182
GGY+G G RGG ++ FL A+AE P P P F + CRVG+G + +EL + KL Y++
Sbjct: 468 GGYWGKGSRGGMMSHFLCAVAETPPPGDRPSVFHTLCRVGSGYTMKELYDLGLKLAKYWK 527
Query: 183 KYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPR 242
+ K++PPS E+P+V+IE P+ S+I+ I + + S+++ +LRFPR
Sbjct: 528 PFH--KKSPPSSILC---GTEKPEVYIE-PQNSVIVQIKA-AEIVPSDMYKTGSTLRFPR 580
Query: 243 IDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSI 302
I+++R DK WH+C+ + +L ++G + G DD+P++ R + K
Sbjct: 581 IEKIRDDKEWHECMTLGDLEQLRGKASGKLATKHLHVG-DDDEPREKRRKPISKTKKAIR 639
Query: 303 VPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTH 362
+ H ++S++ +++F D+ F ++ Y L + E GG N T+
Sbjct: 640 IIEHLKAPNLSNVNKVSNVFEDVEFCVMSGLDGYPKADLENRIAEFGGYIVQNPGPD-TY 698
Query: 363 CVAA--DNKGLKYEAAKRRGDVIHYSWVLDCCSQKKLLQLQPKYYLHLSDSSKKKLQEEV 420
CV A +N +K + + DV+ W+L+C K + QP++ +H+ S+K+ E
Sbjct: 699 CVIAGSENVRVKNIISSDKNDVVKPEWLLECFKTKTCVPWQPRFMIHMCPSTKQHFAREY 758
Query: 421 DEFSDLYFWDLDLADIKQLLSNVDRSED-------PKTIDYYKKKYCPQDKWSCFHGCCI 473
D + D YF D DL +K++ + SE P D + S F I
Sbjct: 759 DCYGDSYFVDTDLDQLKEVFLGIKPSEQQTPEEMAPVIADLECRYSWDHSPLSMFRHYTI 818
Query: 474 Y--FYHSTEPLSPDWEVL-LGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVN 529
Y Y LS E LG+ LE+ FHG KV + L+ +HV++ G D
Sbjct: 819 YLDLYAVINDLSSRIEATRLGIT----ALELRFHGAKVVSCLSEGVSHVII----GED-- 868
Query: 530 FNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSL 575
F + L KK +++ W+ D + K + EE +Y L
Sbjct: 869 -QRRVTDFKIFRRML--KKKFKILQESWVSDSVDKGELQEENQYLL 911
>sp|Q90YB1|DNLI4_CHICK DNA ligase 4 OS=Gallus gallus GN=LIG4 PE=2 SV=2
Length = 912
Score = 216 bits (550), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 159/522 (30%), Positives = 258/522 (49%), Gaps = 32/522 (6%)
Query: 64 AHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSD-LDVLII 122
A EV E I+NR+EGI++KD S ++P R WLK+KPEY+ D LD+LI+
Sbjct: 413 ARTRKEVIDALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIV 472
Query: 123 GGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFR 182
GGY+G G RGG ++ FL A+AE PAP+ P F S CRVG+G + +EL + KL +++
Sbjct: 473 GGYWGKGSRGGMMSHFLCAVAETPAPNEKPTVFHSICRVGSGYTMKELYDLGLKLAKHWK 532
Query: 183 KYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPR 242
Y ++ PP E+P+++IE P S+I+ I + + S+++ +LRFPR
Sbjct: 533 PYN--RKDPPCNILC---GTEKPEMYIE-PCNSVIVQIKA-AEIVNSDMYKTDCTLRFPR 585
Query: 243 IDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSI 302
I+++R DK W++C+ + L + G Y D+ ++ R + KK + I
Sbjct: 586 IEKIREDKEWYECMTLDMLEHLRSRAEGKLASKHLYIDEYDEPQEKKRRTVPKVKKVIGI 645
Query: 303 VPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTH 362
F D+S++ +S+F D+ F + YS L + E GG+ N T+
Sbjct: 646 A-EQFKAPDLSNVNKVSSMFEDVEFCVMTGMGRYSKSELESRIAECGGSVVQNPGPD-TY 703
Query: 363 C--VAADNKGLKYEAAKRRGDVIHYSWVLDCCSQKKLLQLQPKYYLHLSDSSKKKLQEEV 420
C V A+N +K A + DV+ W+L C K L+ QP + +H+S +++ E
Sbjct: 704 CVIVGAENVRVKNIIASNKYDVVKAEWLLQCFQSKMLVPWQPAFMIHMSPETREHFAREY 763
Query: 421 DEFSDLYFWDLDLADIKQLLSNV-DRSEDPKTI-----DYYKKKYCPQDKWSCFHGCCIY 474
D + D Y D D+A +K++ S V D + P + + Y C K F G IY
Sbjct: 764 DCYGDSYTADTDVAQLKEVFSRVKDNKKMPLDLIAELEERYSWNSC---KLCIFRGNTIY 820
Query: 475 FYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNL-ANATHVVVLSVLGYDVNFNSL 533
+ P ++ G L LE+ F+G KV L +HVV+ G D +S
Sbjct: 821 VDYYAIINKPSTKI-HGTRLSIRALELRFYGAKVVPLLEEGVSHVVI----GED---HSR 872
Query: 534 TESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSL 575
+ A + ++ KK +V W+ + + + E ++ +
Sbjct: 873 VKEMKALRR--MFGKKFKIVSELWVTESVKEGVPKNETQFLI 912
>sp|Q54CR9|DNLI4_DICDI DNA ligase 4 OS=Dictyostelium discoideum GN=lig4 PE=3 SV=1
Length = 1088
Score = 194 bits (494), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 146/495 (29%), Positives = 252/495 (50%), Gaps = 40/495 (8%)
Query: 64 AHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYI----RAGSDLDV 119
+++ ++ + I NR+EG++LK+L S + P +R KW+K+KPEYI DLD+
Sbjct: 555 VNSISQIISLLESAIINREEGLMLKNLHSLYVPAERKDKWVKIKPEYIDGMGNGADDLDL 614
Query: 120 LIIGGYYGSG--RRGGEVAQFLVA---LAERPAPD-----TYPRR--FISFCRVGTGLSD 167
+IIGGYYGSG RRGG ++ F++ +A+ D T+ + F SFC+VG+G +D
Sbjct: 615 VIIGGYYGSGLNRRGGTISHFMLGVPFIADSTDTDIDDESTFDKNVIFYSFCKVGSGYTD 674
Query: 168 EELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTI 227
+L ++ L P++ + K PPS Q+ KE+PDVWI+ S +L I + + +
Sbjct: 675 IQLKSLQKDLDPHWNNFSTSK--PPSIIQLAEPFKEKPDVWIDPRVYSKVLQIKAS-QIV 731
Query: 228 RSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELV--HSSNGTTQKGKEYGGLQDDK 285
++ + Y+LRFPR+ ++R DK W DC + ++L +S+N ++ EYG K
Sbjct: 732 VTDKYKCGYTLRFPRVLKIRDDKGWKDCCSHEEIIDLFTNYSTNLNFKRDHEYGDGSGGK 791
Query: 286 PKQFRSSRKGEKKNVS----IVPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPA-YSLDS 340
K+ + S+K + ++ V S F TD S I +IF + + Y+
Sbjct: 792 NKKLKKSKKTTNQLLADSGLKVLSIFQDTDTSGIIPTQNIFQGIEICVIKGSSGEYTKSK 851
Query: 341 LHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG--DVIHYSWVLDCCSQKKLL 398
L M+VE GG+ + + T+ V + + +K + + G D++ ++W++DC ++K+L+
Sbjct: 852 LEIMIVEMGGS-KVQYPSRNTNYVISSKEVVKIQNLIQSGFIDIVSFNWIVDCYNEKRLV 910
Query: 399 QLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYK-- 456
L PKY + ++S+KK+ + D+F D Y + +K + +D+ + K +
Sbjct: 911 PLGPKYMIFSTESTKKRFLLDSDQFGDSYINETTEQSLKDSFNQIDKLKLKKQLSINSTT 970
Query: 457 -------KKYCPQDKWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVC 509
KY WS F Y + + ++ L L I F+GGK+
Sbjct: 971 TTTTTSISKYFSNCWWSLFKEFTFYL-DLYQVVGEKSTLIENNNLELSNLNIQFYGGKIS 1029
Query: 510 NNLAN-ATHVVVLSV 523
N THVV+ S+
Sbjct: 1030 IEFNNKITHVVLDSL 1044
>sp|Q2U6A1|DNLI4_ASPOR DNA ligase 4 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=lig4 PE=3 SV=1
Length = 1006
Score = 175 bits (443), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 144/536 (26%), Positives = 257/536 (47%), Gaps = 63/536 (11%)
Query: 69 EVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYI-RAGSDLDVLIIGGYYG 127
E+E+ + +E EG+VLK+ S + +R W+K+KPEY+ G LDV++IGGYYG
Sbjct: 473 EIEEALRRVVEEASEGLVLKNPRSPYRLNERHDDWMKVKPEYMTEFGESLDVVVIGGYYG 532
Query: 128 SGRRGGEVAQFLVALAERPAPDT---YPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKY 184
SG RGG ++ FL L A + + SFC+VG G + D + + +
Sbjct: 533 SGHRGGGLSSFLCGLRVDDAHSSQGMVASKCYSFCKVGGGFT--AADYANIRHHTDGKWH 590
Query: 185 EYPKRAPPSFY---QVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFP 241
E+ R PP+ Y + ERPD+WI+ PE S++L + + + S+ F +LRFP
Sbjct: 591 EWKSRKPPTTYIELAGGDAQYERPDMWIK-PEDSVVLCVKAASVAV-SDQFRIGLTLRFP 648
Query: 242 RIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVS 301
R ++R DK W L VQ F++L +N ++ ++ + + + K+ +++ KK ++
Sbjct: 649 RFKKLRMDKDWKSALSVQEFLDL--KANAERERKEKEFNVDNSRKKR---AKRDNKKPLA 703
Query: 302 IVPSHFLQTDVSDIKGETSIFSDMVFYFV---NVPPAYSLDSLHKMVVENGGTFSMNLNN 358
IV + + + +IF + FY N P S L ++V NGG F N
Sbjct: 704 IV-GYSAEAEAQYTGPSGNIFEGLNFYITTDSNTPVKKSKAELEQLVKANGGKFFQTSNA 762
Query: 359 SVTHCVAADNKGLKYEAAKRRGDV--IHYSWVLDCCSQKK--------LLQLQPKYYLHL 408
+ + AD + +K + ++ G+V I SW+LDC Q + LL L+P++
Sbjct: 763 APSTICIADRRTVKAASLQKSGNVNIIRPSWILDCIRQSEIDAGLPDSLLPLEPRHVFFA 822
Query: 409 SDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDR------SEDPKTIDYYKKKYCPQ 462
+ K+++ VD F+D Y + ++K++L + + S++PK + ++ Q
Sbjct: 823 TQDKKEEIAASVDRFNDSYARNTTNDELKEILKQMSKDHHFHASQNPKIVRKLNERI--Q 880
Query: 463 DK----WS-----CFHGCCIYFYHS--------TEPLSPDWEVLLGLALRRLKLEISFHG 505
+K W F G I F + E + L LA + + F G
Sbjct: 881 EKVNAGWEMPSGWLFKGLTILFPQNDKVDDAEVDETSQTHQQYRLNLA----RNTVRFAG 936
Query: 506 GKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDC 561
V ++ +++ +V++ + +S+ +S +A+ K H+V ++W+E+C
Sbjct: 937 ANVVDSKSSSVTHIVVAPGSSSSDVSSIRKSHSAKPG----KKVPHLVTAEWIEEC 988
>sp|Q6C8A3|DNLI4_YARLI DNA ligase 4 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=LIG4 PE=3 SV=1
Length = 956
Score = 163 bits (413), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 117/389 (30%), Positives = 196/389 (50%), Gaps = 19/389 (4%)
Query: 64 AHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLII 122
A E+E ++ I EG+V+KD S + R WLK+KPEY+ G LDV+II
Sbjct: 457 ATTAAEIETCMRKIIAESSEGLVIKDPTSVYRVNTRDDSWLKMKPEYMSEFGEKLDVVII 516
Query: 123 GGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFR 182
GGYYGSG+RG ++ +L L + +F SF +VG GL+ + A+ TK + ++
Sbjct: 517 GGYYGSGKRGSILSSYLCGLRADGSD-----QFWSFFKVGGGLTAGDYQAIRTKTEGKWK 571
Query: 183 KYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPR 242
+++ + N ERPDVWIE P S+++ + + + S+ + LRFPR
Sbjct: 572 RWDKNDKPKNVLLAGPNGDLERPDVWIE-PSDSVVVEVKA-ASVVASDQYKVGLCLRFPR 629
Query: 243 IDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSI 302
+R DK W D L + F EL + + KE L+D K + R ++ ++
Sbjct: 630 FRALRLDKTWEDGLTISQFAELRQTVEMEAEN-KELE-LEDRKRRNAGPGRGAKRLKLAN 687
Query: 303 VPSHFLQTDVSDIKGETSIFSDMVFYFVN---VPPAYSLDSLHKMVVENGGTFSMNLNNS 359
V S + ++ + TS+F F ++ P S ++ ++ ++GGT +
Sbjct: 688 VSSD--EDELGTDERPTSVFKATSFAVLSDMSSPRYMSKAAVENLIKKHGGTVFQTVEGP 745
Query: 360 VTHCVAADNKGLKYEAAKRRG---DVIHYSWVLDCCSQKKLLQLQPKYYLHLSDSSKKKL 416
T VA D + +K +A +R DVI +W+LDC +++KL+ L+P+ L S +
Sbjct: 746 HTIPVA-DTRTIKVQALTKRVHGVDVIRPNWLLDCINEEKLVALEPRNLLESSAETLALA 804
Query: 417 QEEVDEFSDLYFWDLDLADIKQLLSNVDR 445
+ VDEF D Y L +++++L +D+
Sbjct: 805 KTNVDEFGDSYTRPLTYKEMQEVLRFMDQ 833
>sp|Q1DKE7|DNLI4_COCIM DNA ligase 4 OS=Coccidioides immitis (strain RS) GN=LIG4 PE=3 SV=1
Length = 985
Score = 160 bits (404), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 139/543 (25%), Positives = 244/543 (44%), Gaps = 51/543 (9%)
Query: 63 VAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYI-RAGSDLDVLI 121
+ ++ ++E ++ + EG+VLK+ S + DR W+K+KPEY+ G LD ++
Sbjct: 460 IGNSAADIEPQLRKVVAEASEGLVLKNPNSPYRLNDRHDDWMKVKPEYMTEFGESLDCVV 519
Query: 122 IGGYYGSGRRGGEVAQFLVALAERPA---PDTYPRRFISFCRVGTGLSDEELDAVVTKLK 178
IGGYYGSG+RGG +A FL L A P + SF +VG G + + +
Sbjct: 520 IGGYYGSGKRGGGLASFLCGLRVDEAQVRQGASPMKCYSFLKVGGGFTAPDYANIRHHTD 579
Query: 179 PYFRKYEYPKRAPPSFYQVTNNSK--ERPDVWIESPEKSIILSITSDIRTIRSEVFSAPY 236
++ + PK+ P F ++ ERPDVWI P++S++L + + T S+ F
Sbjct: 580 GKWKDWN-PKKPPTEFIELAGGDAQYERPDVWIR-PDESVVLCVKAASVT-PSDQFRLGL 636
Query: 237 SLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGE 296
++RFPR R+R DK W L +Q F++L ++ QK KE+ + +SR+
Sbjct: 637 TVRFPRFKRLRMDKDWKSALSIQEFMDLKANAE-REQKEKEF---------KIDNSRRKR 686
Query: 297 KKNVSIVPSHFLQTDVSDIKGETS----IFSDMVFYFVN---VPPAYSLDSLHKMVVENG 349
K P D S G T +F M F+ + P S L +++ NG
Sbjct: 687 AKRAVKKPLTIAGYDESKRAGFTGPSGHVFEGMNFFVITDSVEPEKKSKLELEQLIKANG 746
Query: 350 GTFSMNLNNSVTHCVAADNKGLKYEAAKR--RGDVIHYSWVLDCCSQKK--------LLQ 399
G + A+ + +K + ++ + +I SW+ DC Q + L+
Sbjct: 747 GKIYQTHTAAPNTLCIAERRTVKVASVQKVAKESIIRPSWLFDCIKQNEVDKGLPDLLIP 806
Query: 400 LQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKY 459
+P++ S ++++ VDE+SD Y D+ ++ +LL ++ + K +
Sbjct: 807 FEPRHMYFTVKSQEEEIARHVDEYSDSYARDITPNELSKLLVSMPLIPNLPPPHISKTET 866
Query: 460 CPQDKWSCFHGCCIYFY-----HSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLAN 514
Q++ S F + + H + S + +L L LR F G V N L +
Sbjct: 867 QIQERESTFQELRGWLFKNQVLHFVKRRS---DSMLSLPLRLASNLARFAGASVANELED 923
Query: 515 --ATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKL-HVVRSQWLEDCLAKEQKSEEY 571
THVV+ + D ++ +A K + +++ H+V W++D E +E
Sbjct: 924 KSITHVVIDT----DSQPADVSALRSAISKRVAAGRRIPHLVTIAWIQDSWKAESLLDEE 979
Query: 572 EYS 574
++
Sbjct: 980 RFA 982
>sp|Q5BH83|DNLI4_EMENI DNA ligase 4 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=lig4 PE=3 SV=1
Length = 1009
Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 147/536 (27%), Positives = 253/536 (47%), Gaps = 69/536 (12%)
Query: 69 EVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYI-RAGSDLDVLIIGGYYG 127
EVE ++ + EG+VLK+ S + +R W+K+KPEY+ G LD+++IGGYYG
Sbjct: 470 EVEASLRKAVAEASEGLVLKNPRSPYRLNERHDDWMKVKPEYMTEFGESLDLVVIGGYYG 529
Query: 128 SGRRGGEVAQFLVAL---AERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKY 184
SG RGG+++ FL L + + + P + SFC+VG G + + + + ++
Sbjct: 530 SGHRGGKLSSFLCGLRVDEGQSSQGSNPTKCYSFCKVGGGFTAADYANIRHHTDGKWVEW 589
Query: 185 EYPKRAPPSFYQVT--NNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPR 242
PK+ P ++ ++ ++ ERPD+WI+ PE S+++ + + ++ S+ F +LRFPR
Sbjct: 590 N-PKKPPTTYIELAGGDSQYERPDMWIK-PEDSVVICVKAASVSV-SDQFRIGLTLRFPR 646
Query: 243 IDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKNVSI 302
R+R DK W L VQ F++L S + KE+ + FR R + +
Sbjct: 647 FKRLRMDKDWKSALSVQEFLDL-KSHAEQEHREKEF------NVENFRKKRVKKTTKKPL 699
Query: 303 VPSHFLQTDVSDIKGETS-IFSDMVFYFV---NVPPAYSLDSLHKMVVENGG-TFSMNLN 357
+ + + G + IF + F+ + N P S L +V NGG F N
Sbjct: 700 AIAGYDENAEVQYAGPSGHIFDGLNFFILTDSNAPVKKSKAELENLVKANGGRIFQTNDA 759
Query: 358 NSVTHCVAADNKGLKYEAAKRRG--DVIHYSWVLDCCSQKKL--------LQLQPKYYLH 407
T C+ AD + +K + +++G D+I SW+LDC Q ++ L L+P +
Sbjct: 760 VPDTICI-ADRRTVKAASLQKKGDIDIIRPSWILDCIKQSEIDAGLPDLLLPLEPGHMFF 818
Query: 408 LSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCP------ 461
++ ++ + +D+F+D Y D+ + +++ LL + ++D KT + +
Sbjct: 819 MTKDKEEIVAGSLDQFNDSYARDITVEELRNLLDQM--AKDGKTDSFCSPEAIQKVTEHI 876
Query: 462 QDK----WS-----CFHGCCIYFYH-----STEPLSPDWEVLLGLALRRLKLEISFHGGK 507
Q+K W+ F G + F ++E P + LA K F G
Sbjct: 877 QEKVDSGWTMPCGWLFKGLVLCFPENENDSASEGPEPKQSQRIHLAQNTAK----FAGAS 932
Query: 508 VCNNLANA--THVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKL-HVVRSQWLED 560
V +L + THVVV D +F S + L +KL H+V+ W+ED
Sbjct: 933 VTTSLKDTSITHVVV------DPDFTS--SELPKLRRTLSTRRKLPHIVKVNWIED 980
>sp|Q7SB49|DNLI4_NEUCR DNA ligase 4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=lig-4 PE=3 SV=1
Length = 1046
Score = 139 bits (349), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 139/587 (23%), Positives = 260/587 (44%), Gaps = 95/587 (16%)
Query: 64 AHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIR-AGSDLDVLII 122
A + D +E + + EG+VLK+ S++ R+ W+K+KPEY+ G LD +++
Sbjct: 475 ATSPDAIEPLLRRVVAEASEGLVLKNPRSRYSLNSRNNDWIKVKPEYMSDFGESLDCVVV 534
Query: 123 GGYYGSGRRGGEVAQFLVALAER----PAPDTYPRRFISFCRVGTGLSDEELDAVVTKLK 178
GGY+GSGRRGG ++ FL + + + + +SF +VG G E+ + +
Sbjct: 535 GGYFGSGRRGGTLSSFLCGVRVSQNFIKSGNASAEKCLSFVKVGGGFKAEDYAEIRHHTE 594
Query: 179 PYFRKYEYPKRAPPSFYQVTNNSK---ERPDVWIESPEKSIILSITSDIRTIRSEVFSAP 235
++ ++ P P + ++ K E+PDVWI P S+++S+ + T +S+ F+
Sbjct: 595 GKWQDWD-PSSPPTEYIELGGGEKLQYEKPDVWIR-PSDSVVISVKAASIT-QSDQFAMG 651
Query: 236 YSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKG 295
++LRFPR ++R D+ W LD+ F E++ S ++ ++ +++ K K + K
Sbjct: 652 WTLRFPRFRKLRLDRAWDSALDMDEF-EVLRSKIKDQEQERKKMEMENRKRK---PATKR 707
Query: 296 EKKNVSIV----PSHFLQTDVSDIKGETSIFSDMVFYFVNV--------PPAYSLDSLHK 343
+K++ I PS ET S +F ++ P + +L K
Sbjct: 708 ARKDLVIAGMSDPSSSSAATPVIAPKETREASKRLFEGLDFCVLSDSLKPNKMTKPALEK 767
Query: 344 MVVENGGTFS---MNLNNSVTHCVAADNKGLKYEAAKRRG----DVIHYSWVLDCCSQ-- 394
++ ++GG M+ + + +K + A+ R+ D+I W+ DC Q
Sbjct: 768 LIKDHGGRIHQQVMDHSGQGKIIIPIADKNVIKVASLRKANPEMDIIRPKWIFDCLVQPM 827
Query: 395 --------KK--LLQLQPKYYLHL-SDSSKKKLQEEVDEFSDLYFWDL-DLADIKQLLSN 442
KK LL +P + H S+ + ++ ++ VD+F D Y DL D+ ++K ++
Sbjct: 828 PFTKQKENKKGYLLPFEPTHLFHSGSEETSEEAEQAVDKFGDSYAGDLADINELKAIMEG 887
Query: 443 VDRSEDPKT----------------------IDYYKKKYCPQD--KWSCFHGCCIYFYHS 478
++ + +D+ +++ D + F C ++F
Sbjct: 888 MESDDYVSDSDWDSDSGRGRGGGDGFDMNHFLDHLEEQGTSLDDLRSFMFRRCRVFF--- 944
Query: 479 TEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFT 538
P + + + RLK I F GKV + L ATHVVV++ L ES
Sbjct: 945 ALPSAGNGDGAAESKALRLKNYIRFGNGKVVDELETATHVVVVTA--------PLGESSK 996
Query: 539 AREKHL------------LWNKKLHVVRSQWLEDCLAKEQKSEEYEY 573
E+ + + + +V+ +W+ED + +E EY
Sbjct: 997 KEEREIAAELRYKISLREMGSPMPRIVKGEWVEDSWKEGTVVDEEEY 1043
>sp|O74833|DNLI4_SCHPO DNA ligase 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=lig4 PE=3 SV=3
Length = 913
Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 107/393 (27%), Positives = 191/393 (48%), Gaps = 42/393 (10%)
Query: 63 VAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLI 121
V ++++E + I+ EG+V+K + G+R W+K+KP Y++ G DLD LI
Sbjct: 418 VGSTIEDIEAELRNVIQEGSEGLVIKKPSGSYHLGERMDDWIKVKPYYLQGFGEDLDCLI 477
Query: 122 IGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYF 181
+GGY+G G++ G++ FL L P + +F SF RVG G + + D + + + +
Sbjct: 478 LGGYFGRGKQSGKINSFLCGLRMDYTPKDHSEKFQSFVRVGGGFTYFDRDIIRKETEGKW 537
Query: 182 RKY-----EYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPY 236
+ EY + A T E+PD+WI P+ S++L I + + S F Y
Sbjct: 538 LPWSSDALEYMELAG------TKQDFEKPDMWIH-PKDSLVLQIKA-AEVVVSNRFKTNY 589
Query: 237 SLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGE 296
+LRFPR+++VR D+ W D L + F L ++ + ++ +K ++ R+ +
Sbjct: 590 TLRFPRLEKVRLDRSWKDALTINEFFTLKNAV-----EKQDNVSFHVNKKRKVSQKREKQ 644
Query: 297 KKNVSIVPSHFLQTDVSDIKGETSIFSDMV--FYFVNVPPAYSLDS---LHKMVVENGGT 351
KK + P+ K E S SD++ +FV +PP ++ L ++++ENGG
Sbjct: 645 KKFLYDEPT---------FKKEASPHSDVLKNLHFVVLPPTELHETKAGLQQIIIENGGL 695
Query: 352 FSMNLNNSVTH--CVAAD--NKGLKYEAAKRRGDVIHYSWVLDCCSQKKLLQLQPKY-YL 406
+ N + AD + + E +K +I WV+D + ++L+ P++ YL
Sbjct: 696 IHQGVGNFGKERLFLVADRVSTRVSIERSKNMCTIIRSQWVMDSVNNQRLM---PQWSYL 752
Query: 407 HLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQL 439
S K + ++ S +L L ++KQL
Sbjct: 753 LFSKDEKYSWKTALESLSAKSLSNL-LVELKQL 784
>sp|Q4WVG8|DNLI4_ASPFU DNA ligase 4 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293
/ CBS 101355 / FGSC A1100) GN=lig4 PE=3 SV=1
Length = 979
Score = 134 bits (337), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 117/387 (30%), Positives = 189/387 (48%), Gaps = 30/387 (7%)
Query: 64 AHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYI-RAGSDLDVLII 122
A D+VE ++ + EG+VLK+ S + +R W+K+KPEY+ G LD+++I
Sbjct: 471 ATTKDQVEAALRKVVAEASEGLVLKNPRSPYRLNERHDDWMKVKPEYMTEFGESLDLIVI 530
Query: 123 GGYYGSGRRGGEVAQFLVALA---ERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKP 179
GGYYGSGRRGG ++ FL L + + SFC+VG G + + +
Sbjct: 531 GGYYGSGRRGGNLSSFLCGLRVDDGHASQGASASKCYSFCKVGGGFNAADYANIRHHTDG 590
Query: 180 YFRKYEYPKRAPPSFYQVTNNSK--ERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYS 237
+ ++ PK+ P ++ ++ ERPD+WI+ PE S+++ + + S+ F +
Sbjct: 591 KWMEWN-PKKPPTAYIELAGRDAQYERPDMWIK-PEDSVVICVKA-ASVSASDQFRLGLT 647
Query: 238 LRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEK 297
LRFPR R+R DK W L VQ F++L S+ + KE L D ++ R R +K
Sbjct: 648 LRFPRFKRLRMDKDWKSALSVQEFLDL-KSNVEQEHREKE---LNVDNSRRKRVKRTAKK 703
Query: 298 KNVSIVPSHFLQTDVSDIKGETSIFSDMVFYFV---NVPPAYSLDSLHKMVVENGGTFSM 354
V + + DV IF + FY + + P + L ++V NGG F
Sbjct: 704 P--LTVAGYDMDEDVKYAGPSGHIFDGLNFYILTDSSAPIKKTKPELEQLVKANGGMF-F 760
Query: 355 NLNNSVTHCV-AADNKGLKYEAAKRRGDV--IHYSWVLDCCSQKK--------LLQLQPK 403
NN+ H + AD + +K + ++RGDV I SW++DC Q + LL +P+
Sbjct: 761 QTNNAAPHTICVADRRTVKAASLQKRGDVDIIRPSWIIDCVKQNEIDAGLPDFLLPFEPR 820
Query: 404 YYLHLSDSSKKKLQEEVDEFSDLYFWD 430
+ + ++ VD+F D Y D
Sbjct: 821 HMFFATPGKHDEVASNVDQFGDSYARD 847
>sp|A8N936|DNLI4_COPC7 DNA ligase 4 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC
MYA-4618 / FGSC 9003) GN=LIG4 PE=3 SV=2
Length = 1025
Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 108/362 (29%), Positives = 179/362 (49%), Gaps = 30/362 (8%)
Query: 64 AHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYI-RAGSDLDVLII 122
+++ K ++ +ENR EG+V+K +K+ R+ W+K+KPEY+ G +DVL++
Sbjct: 428 GETANDIRKRMEQVMENRGEGLVIKHPKAKYILNGRNTDWIKVKPEYMDNMGETVDVLVV 487
Query: 123 GGYYGSGRRGGEVAQFLVALAE--RPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPY 180
G YGSG+RGG V+ + A+ + RP D P ++ SF R+GTGLS D V + KP+
Sbjct: 488 AGNYGSGKRGGGVSTLICAVMDDRRPDSDDEP-KYSSFVRIGTGLS--FADYVWVRSKPW 544
Query: 181 FRKYEYPKRAPPSFYQVTNNSKE-RPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLR 239
K PK PP F Q +E + DV++E PE S IL + + S+ + +++R
Sbjct: 545 --KVWDPKN-PPEFLQTAKKGQEDKGDVYLE-PEDSFILKVKA-AEITPSDQYHMGFTMR 599
Query: 240 FPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKN 299
FPR +R D DC+ E + S +K ++ G+ RK K
Sbjct: 600 FPRALAIRDDLSIADCMTATEVFESLKSER--KRKMEDDAGIT-------TKKRKTTVKK 650
Query: 300 VSIVPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDS----LHKMVVENGGTFSMN 355
V+++P + ++ + +T IF+ M F + P + + ++ L K + NGGT S
Sbjct: 651 VALLP-EYSGPNLKKVAVKTDIFNGMKFVVFSDPKSRTGEADKKELMKTIHANGGTCSQI 709
Query: 356 LNNS----VTHCVAADNKGLKYEAAKRRGDVIHYSWVLDCCSQKKLLQLQPKYYLHLSDS 411
+N + V + + LK K DVI SW+ D + + + KY+ H ++
Sbjct: 710 VNKNSEAIVIYGGSITPYDLKLVIDKGIHDVIKPSWITDSVTLGEPAPFKKKYFFHATEE 769
Query: 412 SK 413
K
Sbjct: 770 RK 771
>sp|Q7Z7W5|DNLI4_COPCI DNA ligase 4 OS=Coprinopsis cinerea GN=LIG4 PE=2 SV=1
Length = 1025
Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 108/362 (29%), Positives = 179/362 (49%), Gaps = 30/362 (8%)
Query: 64 AHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYI-RAGSDLDVLII 122
+++ K ++ +ENR EG+V+K +K+ R+ W+K+KPEY+ G +DVL++
Sbjct: 428 GETANDIRKRMEQVMENRGEGLVIKHPKAKYILNGRNTDWIKVKPEYMDNMGETVDVLVV 487
Query: 123 GGYYGSGRRGGEVAQFLVALAE--RPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPY 180
G YGSG+RGG V+ + A+ + RP D P ++ SF R+GTGLS D V + KP+
Sbjct: 488 AGNYGSGKRGGGVSTLICAVMDDRRPDSDDEP-KYSSFVRIGTGLS--FADYVWVRSKPW 544
Query: 181 FRKYEYPKRAPPSFYQVTNNSKE-RPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLR 239
K PK PP F Q +E + DV++E PE S IL + + S+ + +++R
Sbjct: 545 --KVWDPKN-PPEFLQTAKKGQEDKGDVYLE-PEDSFILKVKA-AEITPSDQYHMGFTMR 599
Query: 240 FPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKGEKKN 299
FPR +R D DC+ E + S +K ++ G+ RK K
Sbjct: 600 FPRALAIRDDLSIADCMTATEVFESLKSER--KRKMEDDAGIT-------TKKRKTTVKK 650
Query: 300 VSIVPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDS----LHKMVVENGGTFSMN 355
V+++P + ++ + +T IF+ M F + P + + ++ L K + NGGT S
Sbjct: 651 VALLP-EYSGPNLKKVAVKTDIFNGMKFVVFSDPKSRTGEADKKELMKTIHANGGTCSQI 709
Query: 356 LNNS----VTHCVAADNKGLKYEAAKRRGDVIHYSWVLDCCSQKKLLQLQPKYYLHLSDS 411
+N + V + + LK K DVI SW+ D + + + KY+ H ++
Sbjct: 710 VNKNSEAIVIYGGSITPYDLKLVIDKGIHDVIKPSWITDSVTLGEPAPFKKKYFFHATEE 769
Query: 412 SK 413
K
Sbjct: 770 RK 771
>sp|Q0UCI9|DNLI4_PHANO DNA ligase 4 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574
/ FGSC 10173) GN=LIG4 PE=3 SV=1
Length = 990
Score = 127 bits (320), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 125/489 (25%), Positives = 218/489 (44%), Gaps = 48/489 (9%)
Query: 64 AHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLII 122
AH+ E+E ++ + EG+VLK+ S + DR+ W+K+KPEY+ G LD +++
Sbjct: 477 AHSHTEIEPALRKVVAESSEGLVLKNPRSMYRLNDRNADWMKVKPEYMSEFGESLDCIVV 536
Query: 123 GGYYGSGRRGGEVAQFLVALA----ERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLK 178
GGY+GSG RGG + FL AL +P Y + + SF +VG G S E+ A+ + +
Sbjct: 537 GGYFGSGHRGGAHSSFLCALLLNKDAKPGDADYEKCW-SFFKVGGGFSREDYAAIRGRTE 595
Query: 179 PYFRKYEYPKRAPPSFY---QVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAP 235
++ ++ P+R PP N ERPD WI P S++L + S+ F
Sbjct: 596 GKWKDWD-PRRPPPIIELGGHEQNRQHERPDQWIH-PSDSVVLECKA-ASVEGSDKFRFN 652
Query: 236 YSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRSSRKG 295
+LRFPR +R DK W L + F E+ + +E + + K R +
Sbjct: 653 LTLRFPRFRMLRTDKRWDQALSREEFYEI----KANVEYKREEKEKEFEIEKSRRKRTRT 708
Query: 296 EKKNVSIVPSHFLQTDVSDIKGETSIFSDMVFYFVNV---PPAYSLDSLHKMVVENGGTF 352
KK + + S + T + ++ IF + FY + P S L +V NGG
Sbjct: 709 TKKPIVVAGSETITTPYA--GPQSKIFDGLSFYIMTEQLHPTKKSKVDLEALVKANGGRV 766
Query: 353 SMNLNNSVTHCVAADNKGLKYEAAKRR--GDVIHYSWVLDCCSQKK--------LLQLQP 402
+ + AD + +K + ++R +++ W+ D Q + LL +P
Sbjct: 767 VQRDSMEPNLVIVADKRLIKVASLEKRDTNNIVKPVWIQDTIQQNEVDNGALPYLLPFEP 826
Query: 403 -KYYLHLSDSSKKKLQEEVDEFSDLYFWDL-DLADIKQLLSNVDRSEDPKTIDYYKKKYC 460
++ +L ++ + D++ D Y D+ D+ +++++L D + K + ++ +
Sbjct: 827 NRHMFYLLGDNQLDYEANADDYGDSYARDIADVEEMRKILGATDPPQ--KRTKFDRESFL 884
Query: 461 PQ--DKWSCFHGCCIYFYHSTEPL-----SPDWEVLLGLALRRLKLEISFHGGKVC--NN 511
Q D Y + ST+ P W + LA ++ F GG++ +
Sbjct: 885 DQLEDHGDSLSHLKTYMFSSTKVAFRTSDDPVWTLRAQLAGNYIR----FGGGQITEDED 940
Query: 512 LANATHVVV 520
TH VV
Sbjct: 941 EEGVTHTVV 949
>sp|P04819|DNLI1_YEAST DNA ligase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=CDC9 PE=1 SV=2
Length = 755
Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 102/210 (48%), Gaps = 20/210 (9%)
Query: 62 LVAHNVDEVEKFFKETIENRDEGIVLKDLG---SKWEPGDRSGKWLKLKPEYIRA-GSDL 117
+ +N+DE++KF E++ + EG+++K L S +EP RS WLKLK +Y+ G L
Sbjct: 550 ITTNNLDELQKFLDESVNHSCEGLMVKMLEGPESHYEPSKRSRNWLKLKKDYLEGVGDSL 609
Query: 118 DVLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKL 177
D+ ++G YYG G+R G FL+ + + F + C++GTG SDE L + +L
Sbjct: 610 DLCVLGAYYGRGKRTGTYGGFLLGCYNQDTGE-----FETCCKIGTGFSDEMLQLLHDRL 664
Query: 178 KPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSI---TSDIRTIRSEVFSA 234
P + PK +S PDVW E +L+ S I S F
Sbjct: 665 TPTI--IDGPKAT------FVFDSSAEPDVWFEPTTLFEVLTADLSLSPIYKAGSATFDK 716
Query: 235 PYSLRFPRIDRVRYDKPWHDCLDVQSFVEL 264
SLRFPR R+R DK D VEL
Sbjct: 717 GVSLRFPRFLRIREDKGVEDATSSDQIVEL 746
>sp|Q9P9K9|DNLI_SULSH DNA ligase OS=Sulfolobus shibatae GN=lig PE=3 SV=1
Length = 601
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 111/209 (53%), Gaps = 23/209 (11%)
Query: 64 AHNVDEVEKFFKETIENRDEGIVLKDLG--SKWEPGDRSGKWLKLKPEYIRAGSD-LDVL 120
+NV++++ FF I EG+++K +G + ++ G R W+KLK +Y +D +D++
Sbjct: 390 VNNVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLV 449
Query: 121 IIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPY 180
++GG+YG G+RGG+++ L+A A P DT F S C+V +G SDE+LD + KL
Sbjct: 450 VVGGFYGKGKRGGKISSLLMA-AYNPKTDT----FESVCKVASGFSDEQLDELQKKLMEI 504
Query: 181 FRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILS---ITSDIRTIRSEVFS--AP 235
R ++P+ NSK PD+WIE + I+ S + T +V A
Sbjct: 505 KRDIKHPR----------VNSKMEPDIWIEPVYVAEIIGAEITISPLHTCCQDVVEKDAG 554
Query: 236 YSLRFPRIDRVRYDKPWHDCLDVQSFVEL 264
S+RFPR R R DK D +E+
Sbjct: 555 LSIRFPRFIRWRDDKSPEDATTTDEILEM 583
>sp|P12000|DNLI1_SCHPO DNA ligase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cdc17 PE=3 SV=1
Length = 768
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 113/225 (50%), Gaps = 28/225 (12%)
Query: 66 NVDEVEKFFKETIENRDEGIVLKDL---GSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLI 121
+++ +E+F +E++++ EG+++K L S +EP RS WLK+K +Y+ G LD+++
Sbjct: 551 SIESIEEFLEESVKDSCEGLMVKMLEGPDSHYEPSKRSRHWLKVKKDYLSGVGDSLDLIV 610
Query: 122 IGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYF 181
IG YYG G+R FL+ + PDT + S C++GTG S+E L+ +LK
Sbjct: 611 IGAYYGKGKRTSVYGAFLLGCYD---PDTETVQ--SICKLGTGFSEEHLETFYNQLK--- 662
Query: 182 RKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPY----- 236
+ FY ++ +PDVW E K + + +D+ S V+ A
Sbjct: 663 ---DIVISKKKDFYAHSDVPAHQPDVWFEP--KYLWEVLAADLSL--SPVYKAAIGYVQE 715
Query: 237 ----SLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKE 277
SLRFPR R+R DK W D + E S +QK KE
Sbjct: 716 DKGISLRFPRFIRIREDKSWEDATTSEQVSEFYRSQVAYSQKEKE 760
>sp|Q75CA4|DNLI4_ASHGO DNA ligase 4 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=LIG4 PE=3 SV=1
Length = 981
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 127/547 (23%), Positives = 235/547 (42%), Gaps = 94/547 (17%)
Query: 77 TIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYI-RAGSDLDVLIIGGYYGSGRRGGEV 135
+ + EGIVLK SK+ G R W+K+KPEY+ G ++D+++IG R G
Sbjct: 478 AVAHGSEGIVLKKARSKYSVGKRDDSWIKIKPEYLENFGENMDLVVIG------RDKGRK 531
Query: 136 AQFLVALA-----ERPAPD----------------TYPR--RFISFCRVGTGLSDEELDA 172
F+ ALA E+ P P+ +FISFC + G+S+EE
Sbjct: 532 DSFICALAVTDDSEKNNPSSYESGSDSDSDSEPIIVQPKIEKFISFCSIANGISNEEFKE 591
Query: 173 VVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITS---DIRTIRS 229
+ + + + Y +R PP+ + + P WI+ P+ S++L + + D +S
Sbjct: 592 IDRLTRGNW--FPYDERKPPTDW--VEFGTKTPREWID-PKNSVVLEVKARSIDNEESKS 646
Query: 230 EVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGL-QDDKPKQ 288
+++ +L R+R+DK W V + T ++ + Y + Q+ K +
Sbjct: 647 DLYKTGSTLYNAYCKRIRHDKNWSTASTVAEY--------DTAREARSYFNVSQNAKFGK 698
Query: 289 FRSSRKGEKKNVSIVPSHFLQTDVSDIKGETSIFSDMVFYFV-----NVPPAYSLDS--L 341
RSS + + + L D+ K + F +++V ++ ++D+ +
Sbjct: 699 DRSSPRKRR-------TFHLVGDIDVTKPSKADFLKGYYFYVTSGYFDLQSKKNIDASEI 751
Query: 342 HKMVVENGGTFSMNLN-----NSVTHCVAADNKGLKYEAAKRRGDVIHYSWVLDCCSQKK 396
+ VV GGT+ NL + + D + LK +R D+IH W++DC
Sbjct: 752 GEAVVSCGGTYIHNLRIRASLDKLYILGCKDTRELKM-LIERGYDIIHPEWLMDCVKYGT 810
Query: 397 LLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYK 456
+LQ++PKY S+ K+ + + D++ + Y + +K L + + E+ +
Sbjct: 811 MLQIEPKYVYSASEELMKQARNQEDKYGESYQLPVTEDTLKALANK--QVEEGYASEMGT 868
Query: 457 KKYCPQDKWSCFHGCCIYF-----YHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNN 511
++ F G Y YHS+ W + +K I GG+V N+
Sbjct: 869 DAVSEYERLLIFKGWLFYILDDYAYHSS------WSDI-------VKWNIESCGGEVTND 915
Query: 512 LANATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLH----VVRSQWLEDCLAKEQK 567
L AT VV + ++ ++ + AR + + + +V S+W+E C+ +
Sbjct: 916 LELATIVVAVKDCFSQLSLQAVRNNIGAR---ITGSNDVQPIPKIVTSEWVEACMEAQYL 972
Query: 568 SEEYEYS 574
+E EY+
Sbjct: 973 VDEDEYA 979
>sp|Q980T8|DNLI_SULSO DNA ligase OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617
/ JCM 11322 / P2) GN=lig PE=1 SV=1
Length = 601
Score = 104 bits (259), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 112/209 (53%), Gaps = 23/209 (11%)
Query: 64 AHNVDEVEKFFKETIENRDEGIVLKDLG--SKWEPGDRSGKWLKLKPEYIRAGSD-LDVL 120
A+NV++++ FF I EG+++K +G + ++ G R W+KLK +Y +D +D++
Sbjct: 390 ANNVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLV 449
Query: 121 IIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPY 180
++GG+YG G+RGG+++ L+A A P D+ F S C+V +G SDE+LD + KL
Sbjct: 450 VVGGFYGKGKRGGKISSLLMA-AYNPKTDS----FESVCKVASGFSDEQLDELQKKLMEI 504
Query: 181 FRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILS---ITSDIRTIRSEVFS--AP 235
R ++P+ NSK PD+W+E + I+ S + T +V A
Sbjct: 505 KRDVKHPR----------VNSKMEPDIWVEPVYVAEIIGSEITISPLHTCCQDVVEKDAG 554
Query: 236 YSLRFPRIDRVRYDKPWHDCLDVQSFVEL 264
S+RFPR R R DK D +E+
Sbjct: 555 LSIRFPRFIRWRDDKSPEDATTTDEILEM 583
>sp|P0CN08|DNLI4_CRYNJ DNA ligase 4 OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=LIG4 PE=3 SV=1
Length = 1065
Score = 103 bits (258), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 170/378 (44%), Gaps = 59/378 (15%)
Query: 66 NVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYI-RAGSDLDVLIIGG 124
N ++ ++ + +E + EG+V+K ++ R W+K+KPEY + G +L+VL++GG
Sbjct: 435 NAKDIREYLERVVETKGEGLVVKKTDVIYQTNSRGYDWIKVKPEYSDQMGENLEVLVLGG 494
Query: 125 YYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVV---------- 174
++G G R G++++ L L E+ D + F+ F R L +D V
Sbjct: 495 WWGKGGRSGKISRLLCGLREQAFDDGTLQDFL-FNRFWNELLGLRVDFVSHLMHLRSMRC 553
Query: 175 ---------TKLKPYFRKYEYPKRAPPSFYQVTN-NSKERPDVWIESPEKSIILSITSDI 224
K K ++R ++ + PP F ++ ++PDV+IE PE S ++ + +
Sbjct: 554 SPTHLSQCRNKHKKHWRPFD--RSNPPPFMKLGPVGLDDKPDVYIE-PENSFVIEVKA-- 608
Query: 225 RTIRSEVFSAPY----SLRFPRIDRVRYDKPWHD-CLDVQSFVELVHSSNGTTQKGKEYG 279
SE+ A Y +LRFPR + YDK D LD + + T+K +
Sbjct: 609 ----SEIVPAGYGIGFTLRFPRCKYIYYDKNSRDYALDDECLWTVGQGFFYKTRKLIKRT 664
Query: 280 GLQD--DKPKQFRSSRKGEKKNVSIVPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYS 337
D +PK+ +G P +F +SD ETSIFSDM F
Sbjct: 665 DFMDLFSRPKRSYDDSQG--------PGNFRGQKLSDADVETSIFSDMTF---------- 706
Query: 338 LDSLHKMVVENGGTFSM-NLNNSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQK 395
L +V ++G F+ L++ ++ D K A R G +VI WV + +++
Sbjct: 707 -SDLEALVHKHGADFTQAQLSDLSAIVISPDQKNPLVRAQIRHGVNVIKPEWVFESIARR 765
Query: 396 KLLQLQPKYYLHLSDSSK 413
L ++ + S+ ++
Sbjct: 766 TALPFLKEFLVFASEEAQ 783
Score = 33.9 bits (76), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 338 LDSLHKMVVENGGTFSMNLNN-SVTHCVAADNKGLKY------EAAKRRGDVIHYSWVLD 390
L + K+++ENGG + ++++ +TH + D +Y A +R ++ WV D
Sbjct: 990 LVKVEKLLIENGGRVARSISDPKLTHIIMDDEDSRRYVELTRKTAMPKRKHIVTPKWVED 1049
Query: 391 CCSQKKLL 398
C ++ LL
Sbjct: 1050 CVDEETLL 1057
>sp|P0CN09|DNLI4_CRYNB DNA ligase 4 OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=LIG4 PE=3 SV=1
Length = 1065
Score = 103 bits (258), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 170/378 (44%), Gaps = 59/378 (15%)
Query: 66 NVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYI-RAGSDLDVLIIGG 124
N ++ ++ + +E + EG+V+K ++ R W+K+KPEY + G +L+VL++GG
Sbjct: 435 NAKDIREYLERVVETKGEGLVVKKTDVIYQTNSRGYDWIKVKPEYSDQMGENLEVLVLGG 494
Query: 125 YYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVV---------- 174
++G G R G++++ L L E+ D + F+ F R L +D V
Sbjct: 495 WWGKGGRSGKISRLLCGLREQAFDDGTLQDFL-FNRFWNELLGLRVDFVSHLMHLRSMRC 553
Query: 175 ---------TKLKPYFRKYEYPKRAPPSFYQVTN-NSKERPDVWIESPEKSIILSITSDI 224
K K ++R ++ + PP F ++ ++PDV+IE PE S ++ + +
Sbjct: 554 SPTHLSQCRNKHKKHWRPFD--RSNPPPFMKLGPVGLDDKPDVYIE-PENSFVIEVKA-- 608
Query: 225 RTIRSEVFSAPY----SLRFPRIDRVRYDKPWHD-CLDVQSFVELVHSSNGTTQKGKEYG 279
SE+ A Y +LRFPR + YDK D LD + + T+K +
Sbjct: 609 ----SEIVPAGYGIGFTLRFPRCKYIYYDKNSRDYALDDECLWTVGQGFFYKTRKLIKRT 664
Query: 280 GLQD--DKPKQFRSSRKGEKKNVSIVPSHFLQTDVSDIKGETSIFSDMVFYFVNVPPAYS 337
D +PK+ +G P +F +SD ETSIFSDM F
Sbjct: 665 DFMDLFSRPKRSYDDSQG--------PGNFRGQKLSDADVETSIFSDMTF---------- 706
Query: 338 LDSLHKMVVENGGTFSM-NLNNSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQK 395
L +V ++G F+ L++ ++ D K A R G +VI WV + +++
Sbjct: 707 -SDLEALVHKHGADFTQAQLSDLSAIVISPDQKNPLVRAQIRHGVNVIKPEWVFESIARR 765
Query: 396 KLLQLQPKYYLHLSDSSK 413
L ++ + S+ ++
Sbjct: 766 TALPFLKEFLVFASEEAQ 783
Score = 33.9 bits (76), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 338 LDSLHKMVVENGGTFSMNLNN-SVTHCVAADNKGLKY------EAAKRRGDVIHYSWVLD 390
L + K+++ENGG + ++++ +TH + D +Y A +R ++ WV D
Sbjct: 990 LVKVEKLLIENGGRVARSISDPKLTHIIMDDEDSRRYVELTRKTAMPKRKHIVTPKWVED 1049
Query: 391 CCSQKKLL 398
C ++ LL
Sbjct: 1050 CVDEETLL 1057
>sp|C3MYD2|DNLI_SULIM DNA ligase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1)
GN=lig PE=3 SV=1
Length = 601
Score = 103 bits (258), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 111/209 (53%), Gaps = 23/209 (11%)
Query: 64 AHNVDEVEKFFKETIENRDEGIVLKDLG--SKWEPGDRSGKWLKLKPEYIRAGSD-LDVL 120
+NV++++ FF I EG+++K +G + ++ G R W+KLK +Y +D +D++
Sbjct: 390 VNNVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLV 449
Query: 121 IIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPY 180
++GG+YG G+RGG+++ L+A A P DT F S C+V +G SDE+LD + KL
Sbjct: 450 VVGGFYGKGKRGGKISSLLMA-AYNPKTDT----FESVCKVASGFSDEQLDELQKKLMEI 504
Query: 181 FRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILS---ITSDIRTIRSEVFS--AP 235
R ++P+ NSK PD+W+E + I+ S + T +V A
Sbjct: 505 KRDIKHPR----------VNSKMEPDIWVEPVYVAEIIGAEITISPLHTCCQDVVEKDAG 554
Query: 236 YSLRFPRIDRVRYDKPWHDCLDVQSFVEL 264
S+RFPR R R DK D +E+
Sbjct: 555 LSIRFPRFIRWRDDKSPEDATTTDEILEM 583
>sp|C3MJ14|DNLI_SULIL DNA ligase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1)
GN=lig PE=3 SV=1
Length = 601
Score = 103 bits (258), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 111/209 (53%), Gaps = 23/209 (11%)
Query: 64 AHNVDEVEKFFKETIENRDEGIVLKDLG--SKWEPGDRSGKWLKLKPEYIRAGSD-LDVL 120
+NV++++ FF I EG+++K +G + ++ G R W+KLK +Y +D +D++
Sbjct: 390 VNNVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLV 449
Query: 121 IIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPY 180
++GG+YG G+RGG+++ L+A A P DT F S C+V +G SDE+LD + KL
Sbjct: 450 VVGGFYGKGKRGGKISSLLMA-AYNPKTDT----FESVCKVASGFSDEQLDELQKKLMEI 504
Query: 181 FRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILS---ITSDIRTIRSEVFS--AP 235
R ++P+ NSK PD+W+E + I+ S + T +V A
Sbjct: 505 KRDIKHPR----------VNSKMEPDIWVEPVYVAEIIGAEITISPLHTCCQDVVEKDAG 554
Query: 236 YSLRFPRIDRVRYDKPWHDCLDVQSFVEL 264
S+RFPR R R DK D +E+
Sbjct: 555 LSIRFPRFIRWRDDKSPEDATTTDEILEM 583
>sp|C4KIZ2|DNLI_SULIK DNA ligase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3)
GN=lig PE=3 SV=1
Length = 601
Score = 103 bits (258), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 111/209 (53%), Gaps = 23/209 (11%)
Query: 64 AHNVDEVEKFFKETIENRDEGIVLKDLG--SKWEPGDRSGKWLKLKPEYIRAGSD-LDVL 120
+NV++++ FF I EG+++K +G + ++ G R W+KLK +Y +D +D++
Sbjct: 390 VNNVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLV 449
Query: 121 IIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPY 180
++GG+YG G+RGG+++ L+A A P DT F S C+V +G SDE+LD + KL
Sbjct: 450 VVGGFYGKGKRGGKISSLLMA-AYNPKTDT----FESVCKVASGFSDEQLDELQKKLMEI 504
Query: 181 FRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILS---ITSDIRTIRSEVFS--AP 235
R ++P+ NSK PD+W+E + I+ S + T +V A
Sbjct: 505 KRDIKHPR----------VNSKMEPDIWVEPVYVAEIIGAEITISPLHTCCQDVVEKDAG 554
Query: 236 YSLRFPRIDRVRYDKPWHDCLDVQSFVEL 264
S+RFPR R R DK D +E+
Sbjct: 555 LSIRFPRFIRWRDDKSPEDATTTDEILEM 583
>sp|C3MZR1|DNLI_SULIA DNA ligase OS=Sulfolobus islandicus (strain M.16.27) GN=lig PE=3
SV=1
Length = 601
Score = 103 bits (258), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 111/209 (53%), Gaps = 23/209 (11%)
Query: 64 AHNVDEVEKFFKETIENRDEGIVLKDLG--SKWEPGDRSGKWLKLKPEYIRAGSD-LDVL 120
+NV++++ FF I EG+++K +G + ++ G R W+KLK +Y +D +D++
Sbjct: 390 VNNVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLV 449
Query: 121 IIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPY 180
++GG+YG G+RGG+++ L+A A P DT F S C+V +G SDE+LD + KL
Sbjct: 450 VVGGFYGKGKRGGKISSLLMA-AYNPKTDT----FESVCKVASGFSDEQLDELQKKLMEI 504
Query: 181 FRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILS---ITSDIRTIRSEVFS--AP 235
R ++P+ NSK PD+W+E + I+ S + T +V A
Sbjct: 505 KRDIKHPR----------VNSKMEPDIWVEPVYVAEIIGAEITISPLHTCCQDVVEKDAG 554
Query: 236 YSLRFPRIDRVRYDKPWHDCLDVQSFVEL 264
S+RFPR R R DK D +E+
Sbjct: 555 LSIRFPRFIRWRDDKSPEDATTTDEILEM 583
>sp|C3NF77|DNLI_SULIN DNA ligase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone
#2) GN=lig PE=3 SV=1
Length = 601
Score = 103 bits (258), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 111/209 (53%), Gaps = 23/209 (11%)
Query: 64 AHNVDEVEKFFKETIENRDEGIVLKDLG--SKWEPGDRSGKWLKLKPEYIRAGSD-LDVL 120
+NV++++ FF I EG+++K +G + ++ G R W+KLK +Y +D +D++
Sbjct: 390 VNNVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLV 449
Query: 121 IIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPY 180
++GG+YG G+RGG+++ L+A A P DT F S C+V +G SDE+LD + KL
Sbjct: 450 VVGGFYGKGKRGGKISSLLMA-AYNPKTDT----FESVCKVASGFSDEQLDELQKKLMEI 504
Query: 181 FRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILS---ITSDIRTIRSEVFS--AP 235
R ++P+ NSK PD+W+E + I+ S + T +V A
Sbjct: 505 KRDIKHPR----------VNSKMEPDIWVEPVYVAEIIGAEITISPLHTCCQDVVEKDAG 554
Query: 236 YSLRFPRIDRVRYDKPWHDCLDVQSFVEL 264
S+RFPR R R DK D +E+
Sbjct: 555 LSIRFPRFIRWRDDKSPEDATTTDEILEM 583
>sp|C3N834|DNLI_SULIY DNA ligase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone
#1) GN=lig PE=3 SV=1
Length = 601
Score = 103 bits (257), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 111/209 (53%), Gaps = 23/209 (11%)
Query: 64 AHNVDEVEKFFKETIENRDEGIVLKDLG--SKWEPGDRSGKWLKLKPEYIRAGSD-LDVL 120
+N+++++ FF I EG+++K +G + ++ G R W+KLK +Y +D +D++
Sbjct: 390 VNNIEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLV 449
Query: 121 IIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPY 180
++GG+YG G+RGG+++ L+A A P DT F S C+V +G SDE+LD + KL
Sbjct: 450 VVGGFYGKGKRGGKISSLLMA-AYNPKTDT----FESVCKVASGFSDEQLDELQKKLMEI 504
Query: 181 FRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILS---ITSDIRTIRSEVFS--AP 235
R ++P+ NSK PD+W+E + I+ S + T +V A
Sbjct: 505 KRDIKHPR----------VNSKMEPDIWVEPVYVAEIIGAEITISPLHTCCQDVVEKDAG 554
Query: 236 YSLRFPRIDRVRYDKPWHDCLDVQSFVEL 264
S+RFPR R R DK D +E+
Sbjct: 555 LSIRFPRFIRWRDDKSPEDATTTDEILEM 583
>sp|A9A3K1|DNLI_NITMS DNA ligase OS=Nitrosopumilus maritimus (strain SCM1) GN=lig PE=3
SV=1
Length = 588
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 104/202 (51%), Gaps = 26/202 (12%)
Query: 63 VAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYI-RAGSDLDVLI 121
+ N +++E FF+ +I EG++LK L S ++ G R WLKLK EY G LD+++
Sbjct: 381 IVKNENDIEDFFENSINAGSEGLMLKTLVSPYQAGSRGSHWLKLKREYQNELGDSLDLVV 440
Query: 122 IGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYF 181
IGG++G GRR G L+A E DT F S C+VGTG SDE+LD + L P
Sbjct: 441 IGGFFGKGRRTGNYGTLLLATYEED-EDT----FTSICKVGTGFSDEDLDQLYQILNPKV 495
Query: 182 RKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDI------RTIRSEVF-SA 234
+ P+ NS+ DVW E PE +I + S+I + R ++ A
Sbjct: 496 TIKKNPRI----------NSEMEADVWFE-PE-LVIEVVASEITLSPIHKAARDKIRKGA 543
Query: 235 PYSLRFPRI-DRVRYDKPWHDC 255
+LRFP+ ++R +K D
Sbjct: 544 GLALRFPKFTGKMRVEKMAEDA 565
>sp|Q08387|DNLI4_YEAST DNA ligase 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=DNL4 PE=1 SV=1
Length = 944
Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 100/420 (23%), Positives = 176/420 (41%), Gaps = 96/420 (22%)
Query: 64 AHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLII 122
+ V+ ++K + I EG+VLK S + R+ W+K+KPEY+ G +LD+++I
Sbjct: 423 CYGVESIKKSLEVAISLGSEGVVLKYYNSSYNVASRNNNWIKVKPEYLEEFGENLDLIVI 482
Query: 123 GGYYGSGRRGGEVAQFLVALA-----------------------ERPAPDTYPR--RFIS 157
G R G+ F++ L E+ ++ R + +S
Sbjct: 483 G------RDSGKKDSFMLGLLVLDEEEYKKHQGDSSEIVDHSSQEKHIQNSRRRVKKILS 536
Query: 158 FCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSII 217
FC + G+S EE + K + ++++ + APP+ + + P WI+ P +SI+
Sbjct: 537 FCSIANGISQEEFKEIDRKTRGHWKRTS--EVAPPA--SILEFGSKIPAEWID-PSESIV 591
Query: 218 LSITS---DIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVE-LVHSSNGTTQ 273
L I S D + ++ +L R+RYDK W DC + E SN + Q
Sbjct: 592 LEIKSRSLDNTETNMQKYATNCTLYGGYCKRIRYDKEWTDCYTLNDLYESRTVKSNPSYQ 651
Query: 274 KGKEYGGLQDDKPKQ------FRSSRKGEKKNVSIVPSHFLQTDVSDIKGETSIFSDMVF 327
+ GL K K+ F +RK Q +S+I F+ ++F
Sbjct: 652 AERSQLGLIRKKRKRVLISDSFHQNRK--------------QLPISNI------FAGLLF 691
Query: 328 YFV------NVPPAYSLDSLHKMVVENGGTFSMNL--------------NNSVTHCVAAD 367
Y + + + L K +VE+GG N+ + T C A
Sbjct: 692 YVLSDYVTEDTGIRITRAELEKTIVEHGGKLIYNVILKRHSIGDVRLISCKTTTECKALI 751
Query: 368 NKGLKYEAAKRRGDVIHYSWVLDCCSQKKLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLY 427
++G D++H +WVLDC + K+L+ ++P Y ++S + ++ VD D +
Sbjct: 752 DRGY---------DILHPNWVLDCIAYKRLILIEPNYCFNVSQKMRAVAEKRVDCLGDSF 802
>sp|Q869E1|DNLI1_DICDI DNA ligase 1 OS=Dictyostelium discoideum GN=lig1 PE=3 SV=1
Length = 1192
Score = 100 bits (249), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 115/221 (52%), Gaps = 25/221 (11%)
Query: 66 NVDEVEKFFKETIENRDEGIVLKDLGSK--WEPGDRSGKWLKLKPEYIRAGSD-LDVLII 122
+V++++ + +E +E EG+++K L K +EP RS WLK+K +Y++ +D LD++ I
Sbjct: 979 DVNDIQSYLEEAVEGNCEGLMVKTLKEKSIYEPSRRSYNWLKIKKDYMQGMTDSLDLVPI 1038
Query: 123 GGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFR 182
G +YG G+R G +L+A D F + C++GTG SDE+L ++LKP+
Sbjct: 1039 GAWYGKGKRTGTYGAYLLACY-----DENNEEFQTLCKIGTGFSDEQLTTFTSQLKPHLI 1093
Query: 183 KYEYPKRAPPSFYQVTNNSKERPDVWIESPE-----KSIILSITSDIRTIRSEVF--SAP 235
P + ++ +++ K PDVW SP + LSI S + T S + +
Sbjct: 1094 ------NQPRNQFRFSDSIK--PDVWF-SPSCVWEVLAADLSI-SPVHTAASGILDPNKG 1143
Query: 236 YSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGK 276
+LRFPR R+R DK D V++ + +Q K
Sbjct: 1144 IALRFPRFIRIRPDKSPEDATSSDQVVDMYQNQKINSQSSK 1184
>sp|Q6FVD8|DNLI4_CANGA DNA ligase 4 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=LIG4 PE=3 SV=1
Length = 946
Score = 99.8 bits (247), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 129/542 (23%), Positives = 227/542 (41%), Gaps = 58/542 (10%)
Query: 61 SLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYI-RAGSDLDV 119
S+ A++ ++K ++ + EGI+LK S++ RS W+K+KPEY+ + G ++D+
Sbjct: 435 SIRANDEQMIKKSLEKALSVGSEGIILKRYDSRYVIASRSDDWIKIKPEYLEQFGENMDL 494
Query: 120 LIIG---GYYGSGRRG----GEVAQ---FLVALAERPAPDTYPRRFISFCRVGTGLSDEE 169
+++G S G EV Q +V R F+S C + G+S+EE
Sbjct: 495 VLMGRDPSKKDSLMLGLLDYEEVIQDSPIMVNSQSSEENSQRFRGFVSLCIIANGISNEE 554
Query: 170 LDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITS-DIRTIR 228
+ K K + E + PP Y + P WI+ P+KS+IL I + + R
Sbjct: 555 YKEIDRKTKGLWNDSE---KIPPLEYM--KFGSKVPRQWID-PKKSLILEIKARSLDNTR 608
Query: 229 S--EVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKP 286
S F+A +L ++R DK W C +Q F E S N ++G KP
Sbjct: 609 SSERKFAAGCTLFGGYCRQIREDKNWKTCYTLQEF-ERAKSGNNWRKRGSS-------KP 660
Query: 287 KQFRSSRKGEKKNVSIVPSHFLQTDVSDIKGETSIFSDMVF-----YFVNVPPAYSLDS- 340
++ S ++ + N+ + L+ D ++++ + IF M F YF V S
Sbjct: 661 QKVISKKR--RYNIISSVNKALE-DFAELEHRSDIFDGMYFYVLSDYFDGVKRKRIKKSE 717
Query: 341 LHKMVVENGG-----TFSMNLNNSVTHCVAADNKGLKYEAAKRRGDVIHYSWVLDCCSQK 395
+ K++V NGG + N N + +++ N R D+I WV DC
Sbjct: 718 IQKVIVANGGQLVQNVITRNYNLNDLRIISSRNTVECNSLIVRGYDIISPKWVFDCLLSG 777
Query: 396 KLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYY 455
K+++L+P + + S + +D++ D Y D++ + L S + + D
Sbjct: 778 KIMKLEPSHCFNFSKQLMDYAYKRIDQYGDPYERDINKYEWSSLTSEKICTTAKQQPDVQ 837
Query: 456 KKKYCPQDKWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLANA 515
FHG ++ + + + +GGKV N L++A
Sbjct: 838 FDNSLMDVPHFLFHGRIVFLLSDNNNIQKE------------SFMVDAYGGKVTNELSSA 885
Query: 516 THVVVL-SVLGYDVN-FNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEY 573
V+V+ +V +N S ++ H + +V WL DC+ + + E Y
Sbjct: 886 NLVIVVGAVTQRRINDIRKQISSEVIKQDHP--PRIPDMVSEGWLYDCIKQNTQVAEDNY 943
Query: 574 SL 575
L
Sbjct: 944 RL 945
>sp|Q9W1H4|DNLI1_DROME DNA ligase 1 OS=Drosophila melanogaster GN=DNA-ligI PE=1 SV=2
Length = 747
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 123/265 (46%), Gaps = 44/265 (16%)
Query: 33 ICVCVHVY-------------MLSQLRSQIMAADQTGEPCW----SLVAHNVDEVEKFFK 75
+ VCV+++ LS+ R ++ Q E W +L +++DEV++F +
Sbjct: 480 VQVCVYIFDLLYINGTALVTKNLSERRKLLLEHFQEVEGEWKFATALDTNDIDEVQQFLE 539
Query: 76 ETIENRDEGIVLKDLG--SKWEPGDRSGKWLKLKPEYI-RAGSDLDVLIIGGYYGSGRRG 132
E+I+ EG+++K L + +E RS WLKLK +Y+ G LD+++IGGY G GRR
Sbjct: 540 ESIKGNCEGLMVKTLDEEATYEIAKRSRNWLKLKKDYLSNVGDSLDLVVIGGYKGKGRRT 599
Query: 133 GEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDA--------VVTKLKPYFRKY 184
G FL+A DT + S C++GTG +DE+L V + K Y+R Y
Sbjct: 600 GTYGGFLLACY-----DTENEEYQSICKIGTGFTDEDLQTHSEFLGKHVTSAAKSYYR-Y 653
Query: 185 EYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRID 244
+ P P +++ + + SP + I R I SLRFPR
Sbjct: 654 D-PSLEPDHWFEPVQVWEVKCADLSLSPIHRAAIGIVDGERGI---------SLRFPRFI 703
Query: 245 RVRYDKPWHDCLDVQSFVELVHSSN 269
R+R DK + D + S +
Sbjct: 704 RIRDDKNSENATDANQVAHMYQSQD 728
>sp|Q42572|DNLI1_ARATH DNA ligase 1 OS=Arabidopsis thaliana GN=LIG1 PE=2 SV=2
Length = 790
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 103/198 (52%), Gaps = 21/198 (10%)
Query: 61 SLVAHNVDEVEKFFKETIENRDEGIVLKDLGS--KWEPGDRSGKWLKLKPEYIRA-GSDL 117
++ ++++DE++KF +++ EG+++K L S +EP RS WLKLK +Y+ + G +
Sbjct: 574 AVTSNDIDEIQKFLDASVDVGCEGLIIKTLDSDATYEPAKRSNNWLKLKKDYMDSIGDSV 633
Query: 118 DVLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKL 177
D++ I ++G G+R G FL+A D F S C++GTG SD LD + L
Sbjct: 634 DLVPIAAFHGRGKRTGVYGAFLLACY-----DVDKEEFQSICKIGTGFSDAMLDERSSSL 688
Query: 178 KPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPE----KSIILSITSDIRTIRSEV-F 232
+ P +Y+V ++ PDVW E E K+ L+I+ R V
Sbjct: 689 RSQVIA------TPKQYYRVGDSLN--PDVWFEPTEVWEVKAADLTISPVHRAATGIVDP 740
Query: 233 SAPYSLRFPRIDRVRYDK 250
SLRFPR+ RVR DK
Sbjct: 741 DKGISLRFPRLLRVREDK 758
>sp|Q46C04|DNLI1_METBF DNA ligase 1 OS=Methanosarcina barkeri (strain Fusaro / DSM 804)
GN=lig1 PE=3 SV=1
Length = 549
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 105/209 (50%), Gaps = 37/209 (17%)
Query: 62 LVAHNVDEVEKFFKETIENRDEGIVLKDLG--SKWEPGDRSGKWLKLKPEYIRAGSD-LD 118
+V N++E+E FF E +E R EGI++K +G S +E G RS WLK K EY + D
Sbjct: 348 IVTDNLEEIEDFFNEALEKRLEGIIIKSMGRNSAYEAGKRSWFWLKWKEEYASGMRETFD 407
Query: 119 VLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLK 178
+ IIG YYG G+R G L A+ + +RF +F +VGTG ++ + + + L
Sbjct: 408 LAIIGKYYGRGKRKGSFGALLCAIL-----NGEEQRFETFTKVGTGFTEADAKEIDSLLS 462
Query: 179 PYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAP--- 235
+ E PK V S+ PD+++E S+++ + + SE+ +P
Sbjct: 463 EHIIS-EVPK-------NVLIKSRMLPDIFVEP---SLVIEV------LGSEITESPSHT 505
Query: 236 ---------YSLRFPRIDRVRYDKPWHDC 255
+LRFPR R+R+DK +D
Sbjct: 506 AGQGEGDTGLALRFPRFLRIRHDKGPYDI 534
>sp|A4YD25|DNLI_METS5 DNA ligase OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348)
GN=lig PE=3 SV=1
Length = 598
Score = 93.6 bits (231), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 119/231 (51%), Gaps = 38/231 (16%)
Query: 48 QIMAADQTGEPCWSLVAHNVDEVEKFFKETIENRDEGIVLKDLG--SKWEPGDRSGKWLK 105
+I+A++ ++A VD++ ++F + I EG+++K +G S ++ G R W+K
Sbjct: 375 EILASNDKVHIASHIIADRVDKLREYFYQAISEGAEGVMVKSIGPDSIYQAGSRGWLWIK 434
Query: 106 LKPEYIRAGSD-LDVLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTG 164
LK +Y +D +D++++G +YG G+RGG+ + L+A A P D F + C+V +G
Sbjct: 435 LKRDYQSEMADTVDLVVVGAFYGKGKRGGKFSSLLMA-AYNPEKDV----FETVCKVASG 489
Query: 165 LSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDI 224
SD+ELD + K+ R+ ++P+ S PDVW+ SP ++ +++
Sbjct: 490 FSDQELDEMQKKINELKREQKHPRVV----------SDMIPDVWV-SP------TLVAEV 532
Query: 225 RTIRSEVFSAP-----------YSLRFPRIDRVRYDKPWHDCLDVQSFVEL 264
I +E+ +P S+RFPR R R DK D Q +E+
Sbjct: 533 --IGAEITISPLHTCCRGEKGGLSIRFPRFIRWRDDKSPEDATTNQEIMEM 581
>sp|P0CL74|DNLI_PYRAY DNA ligase OS=Pyrococcus abyssi GN=lig PE=3 SV=1
Length = 559
Score = 93.2 bits (230), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 118/244 (48%), Gaps = 32/244 (13%)
Query: 22 CNISTVAMNDGICVCVHVYMLSQLR-SQIMAADQTGEPCWSLVAHNVDEVEKFFKETIEN 80
N+ V DG+ + +M + + +I+ A+ + +L+ NV+E E+F+K +E
Sbjct: 336 LNLFDVLYVDGVSLIDTKFMERRKKLEEIVEANGKVKIAENLITKNVEEAEQFYKRALEM 395
Query: 81 RDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLV 140
EG++ K L + +EPG+R KWLK+KP +LD++IIG +G GRR + F++
Sbjct: 396 GHEGLMAKRLDAIYEPGNRGKKWLKIKPTM----ENLDLVIIGAEWGEGRRAHLLGSFIL 451
Query: 141 ALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNN 200
A D F+ +VG+G +D++L L+P K E +
Sbjct: 452 G-----AYDPETGEFLEVGKVGSGFTDDDLVEFTKMLRPLIIKEEGKR------------ 494
Query: 201 SKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQS 260
VWI+ K +I +I+ +S + + ++LRFPR +R DK D ++
Sbjct: 495 ------VWIQP--KVVIEVTYQEIQ--KSPKYRSGFALRFPRYVALREDKGPEDADTIER 544
Query: 261 FVEL 264
+L
Sbjct: 545 IAQL 548
>sp|P0CL75|DNLI_PYRAB DNA ligase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=lig PE=3
SV=1
Length = 559
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 117/244 (47%), Gaps = 32/244 (13%)
Query: 22 CNISTVAMNDGICVCVHVYMLSQLR-SQIMAADQTGEPCWSLVAHNVDEVEKFFKETIEN 80
N+ V DG+ + +M + + +I+ + + +L+ NV+E E+F+K +E
Sbjct: 336 LNLFDVLYVDGVSLIDTKFMERRKKLEEIVETNGKVKIAENLITKNVEEAEQFYKRALEM 395
Query: 81 RDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLV 140
EG++ K L + +EPG+R KWLK+KP +LD++IIG +G GRR + F++
Sbjct: 396 GHEGLMAKRLDAVYEPGNRGKKWLKIKPTM----ENLDLVIIGAEWGEGRRAHLLGSFIL 451
Query: 141 ALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNN 200
A D F+ +VG+G +D++L LKP K E +
Sbjct: 452 G-----AYDPETGEFLEVGKVGSGFTDDDLVEFTKMLKPLIIKEEGKR------------ 494
Query: 201 SKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQS 260
VWI+ K +I +I+ +S + + ++LRFPR +R DK D ++
Sbjct: 495 ------VWIQP--KVVIEVTYQEIQ--KSPKYRSGFALRFPRYVALREDKGPEDADTIER 544
Query: 261 FVEL 264
+L
Sbjct: 545 IAQL 548
>sp|Q9HHC4|DNLI_PYRKO DNA ligase OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM
12380 / KOD1) GN=lig PE=1 SV=2
Length = 559
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 99/203 (48%), Gaps = 31/203 (15%)
Query: 62 LVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLI 121
L+ V+E E F++ +E EG++ K L S +EPG+R KWLK+KP +LD++I
Sbjct: 377 LITKKVEEAEAFYRRALELGHEGLMAKRLDSIYEPGNRGKKWLKIKPTM----ENLDLVI 432
Query: 122 IGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYF 181
IG +G GRR + FLVA A D + F+ +VG+G +DE+L LKPY
Sbjct: 433 IGAEWGEGRRAHLLGSFLVA-----AYDPHSGEFLPVGKVGSGFTDEDLVEFTKMLKPYI 487
Query: 182 RKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFP 241
+ E ++E K +I +I+ +S + + ++LRFP
Sbjct: 488 VRQE--------------------GKFVEIEPKFVIEVTYQEIQ--KSPKYKSGFALRFP 525
Query: 242 RIDRVRYDKPWHDCLDVQSFVEL 264
R +R DK + ++ EL
Sbjct: 526 RYVALREDKSPEEADTIERVAEL 548
>sp|Q9HH07|DNLI_THEFM DNA ligase OS=Thermococcus fumicolans GN=lig PE=3 SV=1
Length = 559
Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 98/208 (47%), Gaps = 35/208 (16%)
Query: 59 CWSLVAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLD 118
LV +E E+F++ +E EG++ K L S +EPG+R KWLK+KP DLD
Sbjct: 374 AQQLVTKKAEEAEEFYRRALELGHEGLMAKRLDSVYEPGNRGKKWLKIKPTM----EDLD 429
Query: 119 VLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLK 178
++IIG +G GRR + FLVA A D + F+ +VG+G +DE+L LK
Sbjct: 430 LVIIGAEWGEGRRAHLLGSFLVA-----AYDQHRGEFVPVGKVGSGFTDEDLAEFTKMLK 484
Query: 179 PYFRKYE--YPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPY 236
P + E Y + P QVT ++ SP+ + + +
Sbjct: 485 PLIVREEGKYVEIEPRVVIQVTYQEIQK------SPK------------------YESGF 520
Query: 237 SLRFPRIDRVRYDKPWHDCLDVQSFVEL 264
+LRFPR +R DK + ++ EL
Sbjct: 521 ALRFPRYVALREDKSPEEADTIERISEL 548
>sp|Q8PVR7|DNLI1_METMA DNA ligase 1 OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM
3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=lig1 PE=3
SV=1
Length = 579
Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 108/218 (49%), Gaps = 37/218 (16%)
Query: 62 LVAHNVDEVEKFFKETIENRDEGIVLKDLGSK--WEPGDRSGKWLKLKPEYIRAGSD-LD 118
+V +V+E+E FF ETIE EGIV+K + S +E G RS W K K EY + D
Sbjct: 380 IVTESVEEIEDFFNETIEKGLEGIVVKSMSSNSYYEAGKRSWFWFKWKQEYSEGMRETFD 439
Query: 119 VLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLK 178
++++G YYG GRR G L A+ + +RF + +VGTG ++ + + + L
Sbjct: 440 LVVVGSYYGRGRRKGSFGALLCAVLNKEG-----QRFETLTKVGTGFTEADAEEINRLLS 494
Query: 179 PYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAP--- 235
+ E PK V+ PD++IE ++++ + + SE+ ++P
Sbjct: 495 DHIVS-EIPK-------GVSIKKGMLPDIFIEP---AVVIEV------LGSEITNSPGHT 537
Query: 236 ---------YSLRFPRIDRVRYDKPWHDCLDVQSFVEL 264
+LRFPR R+R+DK +D + V+ +L
Sbjct: 538 AGEGEEETGLALRFPRFLRIRHDKTPYDAMTVKEVRDL 575
>sp|Q976G4|DNLI_SULTO DNA ligase OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 /
NBRC 100140 / 7) GN=lig PE=3 SV=1
Length = 600
Score = 91.3 bits (225), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 113/211 (53%), Gaps = 23/211 (10%)
Query: 62 LVAHNVDEVEKFFKETIENRDEGIVLKDLG--SKWEPGDRSGKWLKLKPEYIRAGSD-LD 118
+ +NVD++ +FF + I N EG+++K + S ++ G R W+KLK +Y +D +D
Sbjct: 388 IYTNNVDKLMEFFYDAISNGAEGVMVKSVAKDSIYQAGSRGFLWIKLKRDYQSEMADSVD 447
Query: 119 VLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLK 178
++++G +YG G+RGG+++ L+A A P DT F + C+V +G SD ELD + KL
Sbjct: 448 LVVVGAFYGRGKRGGKLSSLLMA-AYDPETDT----FKTVCKVASGFSDAELDELQKKL- 501
Query: 179 PYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILS--IT-SDIRTIRSEVFS-- 233
+ + K+ P +S+ PD+W+E + I+ IT S T ++ S
Sbjct: 502 ---MEIKLDKKDP------RVDSQLEPDIWVEPKYVAEIIGAEITLSPEHTCCKDMVSKG 552
Query: 234 APYSLRFPRIDRVRYDKPWHDCLDVQSFVEL 264
A S+RFPR R R DK D + E+
Sbjct: 553 AGLSVRFPRFIRWRDDKSIEDATTPKEIYEM 583
>sp|Q9YMV2|DNLI_NPVLD DNA ligase OS=Lymantria dispar multicapsid nuclear polyhedrosis
virus GN=LIG PE=1 SV=1
Length = 548
Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 103/213 (48%), Gaps = 15/213 (7%)
Query: 65 HNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGS---DLDVLI 121
+ + E+ +F T+ EG+VLK S + P R W K+K E++ G+ LD+++
Sbjct: 327 NTLSELRRFVHRTLATGAEGVVLKGRLSSYAPNKRD--WFKMKKEHLCDGALVDTLDLVV 384
Query: 122 IGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYF 181
+G YYG+GR +++ FL+ +R + + + +V +GL+D L A+ +L+P
Sbjct: 385 LGAYYGTGRNCRKMSVFLMGCLDRES-----NVWTTVTKVHSGLADAALTALSKELRPLM 439
Query: 182 RKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFP 241
P+ P ++ N P + PEK + I +A ++RFP
Sbjct: 440 ---AAPRDDLPEWFDC--NESMVPHLLAADPEKMPVWEIACSEMKANIGAHTAGVTMRFP 494
Query: 242 RIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQK 274
R+ R R DK W D+Q +L+ +S T+K
Sbjct: 495 RVKRFRPDKDWSTATDLQEAEQLIRNSQENTKK 527
>sp|Q9YD18|DNLI_AERPE DNA ligase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 /
JCM 9820 / NBRC 100138 / K1) GN=lig PE=3 SV=2
Length = 602
Score = 90.5 bits (223), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 109/222 (49%), Gaps = 33/222 (14%)
Query: 58 PCWSLV----AHNVDEVEKFFKETIENRDEGIVLKDL--GSKWEPGDRSGKWLKLKPEYI 111
P W L + +E+ FF + IE EG+++K + S + G R W+KLK +Y
Sbjct: 384 PLWRLAESIETSDPEELWTFFLKAIEEGAEGVMVKAVHRDSVYTAGVRGWLWVKLKRDYK 443
Query: 112 RAGSD-LDVLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEEL 170
D +D++++G +YG G+RGG+++ L+A A P D +P + C+V TG +DEEL
Sbjct: 444 SEMMDTVDLVVVGAFYGRGKRGGKLSSLLMA-AYDPDRDVFP----TVCKVATGFTDEEL 498
Query: 171 DAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSI--------TS 222
D ++ +K+ P++ P S+ PDVW+E + IL T
Sbjct: 499 D----RMNEMLKKHIIPRKHP------RVESRIEPDVWVEPALVAEILGAELTLSPMHTC 548
Query: 223 DIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVEL 264
+ T+R V S+RFPR R R DK D +E+
Sbjct: 549 CLNTVRPGV---GISIRFPRFIRWRDDKSPEDATTTHELLEM 587
>sp|A8MDU6|DNLI_CALMQ DNA ligase OS=Caldivirga maquilingensis (strain ATCC 700844 / DSMZ
13496 / JCM 10307 / IC-167) GN=lig PE=3 SV=1
Length = 603
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 108/215 (50%), Gaps = 30/215 (13%)
Query: 62 LVAHNVDEVEKFFKETIENRDEGIVLKD--LGSKWEPGDRSGKWLKLKPEYIRAGSD-LD 118
++ + D +EKFF + I + EG++ K LGS +E G R W+K K +Y SD +D
Sbjct: 393 IITDDADSLEKFFLDAISSGCEGVMCKSVKLGSVYEMGARGWLWIKYKRDYKSELSDTMD 452
Query: 119 VLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLK 178
++++G ++G G+R G L+A + PD+ +F + C+VG+G +DE+L + L+
Sbjct: 453 LVVVGAFWGRGKRAGTYGALLLAAYD---PDS--DQFYTVCKVGSGFTDEDLKKLPQMLE 507
Query: 179 PYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSIT------SDIRTIRSEVF 232
PY + +P+ SK PD+W +P ++L IT S + T S +
Sbjct: 508 PYKIPHRHPRVV----------SKMEPDIWF-TP--GLVLEITGAEITMSPLHTCCSVML 554
Query: 233 SAPYSL--RFPRI-DRVRYDKPWHDCLDVQSFVEL 264
L RFPR R R DK D V+ E+
Sbjct: 555 KGDVGLAIRFPRFTGRYRTDKRPEDATTVKEIFEM 589
>sp|Q8TSR7|DNLI1_METAC DNA ligase 1 OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM
2834 / JCM 12185 / C2A) GN=lig1 PE=3 SV=1
Length = 580
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 106/217 (48%), Gaps = 37/217 (17%)
Query: 63 VAHNVDEVEKFFKETIENRDEGIVLKDLGSK--WEPGDRSGKWLKLKPEYIRAGSD-LDV 119
V N++E+E FF ET+E EGIV K + S +E G RS WLK K EY + D+
Sbjct: 382 VTENIEELEDFFNETVEKGLEGIVAKSMSSNSVYEAGKRSWLWLKWKQEYSEGMRETFDL 441
Query: 120 LIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKP 179
+++G YYG G+R G L A+ + ++F +F +VGTG ++ + + + + L
Sbjct: 442 VVVGSYYGKGKRKGSFGALLCAVL-----NEEEQQFETFTKVGTGFTEADAEEINSLLSA 496
Query: 180 YFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAP---- 235
+ E PK V PD++IE ++++ + + SE+ ++P
Sbjct: 497 H-TVSEAPK-------NVIIKKGMLPDIFIEP---AVVIEV------LGSEITNSPGHTA 539
Query: 236 --------YSLRFPRIDRVRYDKPWHDCLDVQSFVEL 264
+LRFPR R+RYD+ D V+ +L
Sbjct: 540 GEGEEETGLALRFPRFLRIRYDRAPFDATTVREIRDL 576
>sp|Q6CSH0|DNLI4_KLULA DNA ligase 4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=LIG4 PE=3
SV=1
Length = 907
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 122/508 (24%), Positives = 216/508 (42%), Gaps = 91/508 (17%)
Query: 64 AHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYI-RAGSDLDVLII 122
A N + ++ ++ I EGIVLK L SK+ G R+ W+K+KPEY+ + G ++D+LII
Sbjct: 419 AINAEAIKDSLEQAISMGSEGIVLKHLHSKYFVGSRNTDWIKIKPEYLEQFGENMDLLII 478
Query: 123 GGYYGSGRRGGEVAQFLVAL--------AERPAPDTYPRRFISFCRVGTGLSDEELDAVV 174
GR G+ F L AE+P RFISFC + GLS+EE +
Sbjct: 479 ------GREQGKKDSFFCGLSISDPNEVAEKP-------RFISFCTIANGLSNEEFKDIE 525
Query: 175 TKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITS---DIRTIRSEV 231
K + K+ PPS + +K P WI PE S++L + + D +
Sbjct: 526 RKT---WGKWHIFSEDPPSPNLLGFGTK-VPYEWIH-PEDSVVLEVKARAIDTKESEKRK 580
Query: 232 FSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSNGTTQKGKEYGGLQDDKPKQFRS 291
+ + +L F ++RYDK W F ++ + N ++ + D K
Sbjct: 581 YRSGCTLHFGYCKQIRYDKDWKTVASFSEFEDMKDARNFYNKRKSH--QVTDGK------ 632
Query: 292 SRKGEKKNVSIVPSHFLQTDVSDIKGETSIFSDMVF-----YFVNVP-PAYSLDSLHKMV 345
R ++ + IV S V+ + ++ FS+ F YF + S + L ++
Sbjct: 633 KRASKRAKIGIVNSSEPTALVAPV---SNTFSNCRFRVISDYFDSTKRRRISQEDLCSVI 689
Query: 346 VENGG--TFSMNLNNSVTHCVAADNKGLKYEAAKR--------RGDVIHYSWVLDCCSQK 395
+E+GG ++ + NN + DN + E R + +I SW+ C +
Sbjct: 690 LEHGGEIVYTSDENN-----LPQDNLYIIGEKLTRECKILLNAKNLIIRPSWIFSCIEEG 744
Query: 396 KLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRS-EDPKTIDY 454
K SD + +L+ +D ++ D + A + LL +R ++P +
Sbjct: 745 Y------KTPFTESDIFRGELESSMD--CSQFYTDFNTASLNHLLETANRGIKNPDS--- 793
Query: 455 YKKKYCPQDKWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLAN 514
P+ F + +S E +L ++ ++ I HGG++ ++ N
Sbjct: 794 --DLLLPEVPLFLFSNLKLAVLNS--------ENVLDTSILEVEFAIKCHGGELV-HIEN 842
Query: 515 ATHVVVLSVLGYDVNFNSLTESFTAREK 542
A+ ++V + +F S + F+ R+K
Sbjct: 843 ASIIIVFN------DFISREDLFSLRQK 864
>sp|Q4JAM1|DNLI_SULAC DNA ligase OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM
639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=lig PE=3
SV=1
Length = 598
Score = 87.4 bits (215), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 111/209 (53%), Gaps = 23/209 (11%)
Query: 67 VDEVEKFFKETIENRDEGIVLKDLG--SKWEPGDRSGKWLKLKPEYIRAGSD-LDVLIIG 123
V+E+ ++F + I + EG+++K +G S ++ G R W+KLK +Y +D +D++I+G
Sbjct: 393 VNELVEYFHQAISDGTEGVIVKSIGKDSIYQAGARGFLWIKLKKDYQSEMADSVDLVIVG 452
Query: 124 GYYGSGRRGGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRK 183
+YG G+RGG+++ L+A A P DT F + C+V +G SD EL+ V + +
Sbjct: 453 AFYGRGKRGGKLSSLLMA-AYDPDKDT----FYTVCKVASGFSDAELEEV----QKMLSE 503
Query: 184 YEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILS--IT-SDIRTIRSEVFS--APYSL 238
+ K+ P S+ +PD+W++ + I+ IT S + T V S A S+
Sbjct: 504 AKLDKKDPRV------ESEIQPDIWVKPKYVAEIIGAEITLSPLHTCCKGVVSEEAGLSI 557
Query: 239 RFPRIDRVRYDKPWHDCLDVQSFVELVHS 267
RFPR R R DK + +E+ S
Sbjct: 558 RFPRFIRWRDDKSVEEATTPNEILEMYQS 586
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 321,546,743
Number of Sequences: 539616
Number of extensions: 14835075
Number of successful extensions: 57327
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 1193
Number of HSP's that attempted gapping in prelim test: 49649
Number of HSP's gapped (non-prelim): 5083
length of query: 824
length of database: 191,569,459
effective HSP length: 126
effective length of query: 698
effective length of database: 123,577,843
effective search space: 86257334414
effective search space used: 86257334414
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 66 (30.0 bits)