Query 003386
Match_columns 824
No_of_seqs 348 out of 2028
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 23:26:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003386.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003386hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ii6_X DNA ligase 4; XRCC4, NH 100.0 1E-44 3.6E-49 385.5 23.1 248 317-575 6-263 (263)
2 3l2p_A DNA ligase 3; DNA ligas 100.0 2.3E-43 7.8E-48 411.1 19.9 244 6-268 314-578 (579)
3 1x9n_A DNA ligase I; 5'-adenyl 100.0 1.6E-41 5.6E-46 402.4 24.7 243 7-269 399-670 (688)
4 2hiv_A Thermostable DNA ligase 100.0 4.7E-41 1.6E-45 395.3 23.9 242 6-269 338-608 (621)
5 3gde_A DNA ligase; DNA-binding 100.0 8.8E-41 3E-45 388.1 23.2 229 7-268 308-552 (558)
6 2cfm_A Thermostable DNA ligase 100.0 3.4E-40 1.2E-44 384.4 23.0 230 6-268 306-552 (561)
7 1vs0_A Putative DNA ligase-lik 100.0 1.5E-38 5.1E-43 345.7 15.1 208 7-257 89-309 (310)
8 1z56_C DNA ligase IV; DNA repa 100.0 6.1E-38 2.1E-42 332.9 7.5 246 318-576 2-262 (264)
9 1a0i_A DNA ligase; DNA replica 100.0 3.6E-30 1.2E-34 284.0 13.4 183 31-247 139-348 (348)
10 1fvi_A Chlorella virus DNA lig 100.0 2.4E-28 8.1E-33 264.0 15.4 180 10-252 72-297 (297)
11 3olc_X DNA topoisomerase 2-bin 99.9 5.5E-22 1.9E-26 214.3 15.2 183 319-579 103-288 (298)
12 1kzy_C Tumor suppressor P53-bi 99.8 4.5E-20 1.5E-24 195.6 14.0 196 315-574 9-250 (259)
13 1l0b_A BRCA1; TANDEM-BRCT, thr 99.8 2.1E-19 7E-24 186.1 17.3 197 320-577 3-214 (229)
14 1t15_A Breast cancer type 1 su 99.8 2.3E-18 7.8E-23 176.0 17.2 197 323-577 3-212 (214)
15 2vxb_A DNA repair protein RHP9 99.8 2.3E-18 7.9E-23 180.6 16.4 204 320-569 1-240 (241)
16 3u3z_A Microcephalin; DNA repa 99.8 2.4E-18 8.4E-23 175.4 15.4 181 327-576 14-198 (199)
17 2nte_A BARD-1, BRCA1-associate 99.8 8.9E-18 3.1E-22 172.0 16.1 180 324-571 2-209 (210)
18 2etx_A Mediator of DNA damage 99.7 3.3E-17 1.1E-21 168.1 14.3 194 320-580 8-206 (209)
19 1p16_A GTP--RNA, mRNA capping 99.7 1.6E-16 5.3E-21 178.1 10.6 179 32-267 136-363 (395)
20 2ebw_A DNA repair protein REV1 99.6 3.2E-15 1.1E-19 134.7 9.3 88 317-406 8-96 (97)
21 3al2_A DNA topoisomerase 2-bin 99.5 2.2E-14 7.6E-19 149.8 13.0 211 323-577 8-230 (235)
22 3sqd_A PAX-interacting protein 99.5 6.5E-14 2.2E-18 144.8 14.2 191 321-575 13-218 (219)
23 1wf6_A Similar to S.pombe -RAD 99.5 1.1E-13 3.7E-18 132.1 11.1 93 462-577 35-128 (132)
24 4id3_A DNA repair protein REV1 99.5 7.1E-14 2.4E-18 124.1 8.0 85 318-404 4-90 (92)
25 2d8m_A DNA-repair protein XRCC 99.4 1.7E-13 5.9E-18 130.2 7.8 90 318-409 19-109 (129)
26 2ep8_A Pescadillo homolog 1; A 99.4 2.9E-13 1E-17 123.1 8.0 81 317-403 8-99 (100)
27 3l3e_A DNA topoisomerase 2-bin 99.4 2.9E-13 9.8E-18 124.3 7.4 89 316-405 10-102 (107)
28 2cou_A ECT2 protein; BRCT doma 99.4 4.4E-13 1.5E-17 123.8 8.1 89 464-577 9-98 (109)
29 3pc6_A DNA repair protein XRCC 99.4 8.4E-13 2.9E-17 120.8 9.3 87 319-405 5-94 (104)
30 3l46_A Protein ECT2; alternati 99.4 8.9E-13 3.1E-17 122.3 9.1 89 464-577 18-107 (112)
31 3pc6_A DNA repair protein XRCC 99.4 1.7E-12 5.7E-17 118.8 9.7 93 465-579 5-98 (104)
32 3pa6_A Microcephalin; BRCT dom 99.3 8.2E-13 2.8E-17 121.6 7.0 93 465-578 5-98 (107)
33 4id3_A DNA repair protein REV1 99.3 1.6E-12 5.5E-17 115.3 8.6 85 464-575 4-91 (92)
34 2coe_A Deoxynucleotidyltransfe 99.3 3.1E-12 1.1E-16 119.7 10.3 96 463-574 16-112 (120)
35 3l46_A Protein ECT2; alternati 99.3 7E-13 2.4E-17 123.0 5.5 85 319-404 19-104 (112)
36 1ckm_A MRNA capping enzyme; nu 99.3 1.9E-12 6.5E-17 141.6 9.4 84 35-122 141-248 (330)
37 2jw5_A DNA polymerase lambda; 99.3 4.1E-13 1.4E-17 123.5 2.3 98 463-577 7-105 (106)
38 2cou_A ECT2 protein; BRCT doma 99.3 9.7E-13 3.3E-17 121.5 4.1 86 319-405 10-96 (109)
39 3l41_A BRCT-containing protein 99.3 1.1E-11 3.8E-16 128.2 11.3 193 324-573 8-212 (220)
40 1wf6_A Similar to S.pombe -RAD 99.3 1.5E-11 5.2E-16 117.2 10.9 99 307-407 26-128 (132)
41 2ebw_A DNA repair protein REV1 99.3 8.2E-12 2.8E-16 112.3 7.8 86 464-576 9-96 (97)
42 2d8m_A DNA-repair protein XRCC 99.2 2.1E-11 7.4E-16 115.7 8.7 90 466-580 21-111 (129)
43 3olc_X DNA topoisomerase 2-bin 99.2 4.3E-11 1.5E-15 129.2 9.9 148 343-573 28-187 (298)
44 3l3e_A DNA topoisomerase 2-bin 99.1 6.8E-11 2.3E-15 108.4 8.5 93 464-578 12-105 (107)
45 2ep8_A Pescadillo homolog 1; A 99.1 1.1E-10 3.8E-15 106.1 9.8 80 464-574 9-100 (100)
46 3pa6_A Microcephalin; BRCT dom 99.0 5.6E-10 1.9E-14 102.7 8.3 85 320-404 6-94 (107)
47 3pc7_A DNA ligase 3; DNA repai 99.0 3.6E-10 1.2E-14 100.0 5.9 72 465-570 14-87 (88)
48 3pc7_A DNA ligase 3; DNA repai 99.0 2.9E-10 1E-14 100.6 4.1 73 318-400 13-87 (88)
49 2dun_A POL MU, DNA polymerase 98.9 2.7E-09 9.3E-14 100.6 8.9 99 465-577 8-108 (133)
50 3ef0_A RNA polymerase II subun 98.9 3E-09 1E-13 117.9 9.5 86 319-404 280-370 (372)
51 3ef1_A RNA polymerase II subun 98.8 3E-09 1E-13 119.7 7.5 87 318-404 349-440 (442)
52 3u3z_A Microcephalin; DNA repa 98.8 3.6E-09 1.2E-13 107.6 4.7 79 318-403 116-195 (199)
53 1t15_A Breast cancer type 1 su 98.7 2E-08 6.8E-13 102.1 7.8 87 318-404 112-209 (214)
54 2jw5_A DNA polymerase lambda; 98.7 6.3E-09 2.2E-13 95.5 3.2 89 318-406 8-104 (106)
55 3ef0_A RNA polymerase II subun 98.7 2.1E-08 7.2E-13 111.2 7.3 91 465-575 280-371 (372)
56 2nte_A BARD-1, BRCA1-associate 98.6 3.7E-08 1.3E-12 100.4 7.3 82 319-401 102-209 (210)
57 3ef1_A RNA polymerase II subun 98.6 4.1E-08 1.4E-12 110.6 6.8 90 466-575 351-441 (442)
58 1l0b_A BRCA1; TANDEM-BRCT, thr 98.6 7.6E-08 2.6E-12 99.1 8.0 84 320-403 116-210 (229)
59 1l7b_A DNA ligase; BRCT, autos 98.5 1.3E-07 4.5E-12 84.6 7.3 76 318-394 4-80 (92)
60 2coe_A Deoxynucleotidyltransfe 98.5 1.9E-07 6.6E-12 87.3 8.2 91 318-408 17-116 (120)
61 3sqd_A PAX-interacting protein 98.5 1.7E-07 5.7E-12 96.8 7.3 90 465-578 11-100 (219)
62 3ii6_X DNA ligase 4; XRCC4, NH 98.4 3.7E-07 1.3E-11 96.7 8.6 86 318-403 161-261 (263)
63 2etx_A Mediator of DNA damage 98.4 2.9E-07 1E-11 94.0 7.0 85 466-577 8-92 (209)
64 2k6g_A Replication factor C su 98.4 8.4E-07 2.9E-11 81.8 8.8 77 319-395 30-108 (109)
65 1z56_C DNA ligase IV; DNA repa 98.4 1.6E-07 5.3E-12 99.2 3.8 87 317-404 156-260 (264)
66 3kyh_C MRNA-capping enzyme sub 98.3 2E-07 6.8E-12 105.3 4.1 88 33-123 146-264 (461)
67 2ebu_A Replication factor C su 98.3 1.5E-06 5.1E-11 80.4 8.4 77 319-395 20-98 (112)
68 2cok_A Poly [ADP-ribose] polym 98.3 1.1E-06 3.9E-11 81.4 7.7 83 319-402 8-104 (113)
69 1kzy_C Tumor suppressor P53-bi 98.2 1.4E-06 4.7E-11 92.1 7.7 101 464-577 12-137 (259)
70 2dun_A POL MU, DNA polymerase 98.2 1E-06 3.4E-11 83.2 5.5 91 318-408 7-109 (133)
71 2vxb_A DNA repair protein RHP9 98.2 2E-06 7E-11 89.9 7.7 91 466-577 1-118 (241)
72 3al2_A DNA topoisomerase 2-bin 98.1 4.5E-06 1.5E-10 86.9 9.2 86 469-578 8-96 (235)
73 1ik9_C DNA ligase IV; DNA END 98.1 1.1E-06 3.9E-11 65.1 2.7 34 411-444 2-35 (37)
74 3l41_A BRCT-containing protein 98.0 5.5E-06 1.9E-10 85.5 6.5 82 469-577 7-88 (220)
75 2l42_A DNA-binding protein RAP 97.7 2.3E-05 7.9E-10 69.6 4.4 80 318-404 8-93 (106)
76 3rtx_A MRNA-capping enzyme; gu 97.7 1.2E-05 4.3E-10 88.0 3.0 83 34-121 132-247 (343)
77 2l42_A DNA-binding protein RAP 97.7 2.4E-05 8.3E-10 69.5 3.7 88 465-580 9-99 (106)
78 3t7k_A RTT107, regulator of TY 97.5 0.0015 5.1E-08 67.8 14.5 178 325-566 23-240 (256)
79 1l7b_A DNA ligase; BRCT, autos 96.9 0.0019 6.5E-08 57.5 7.0 76 464-564 4-80 (92)
80 1dgs_A DNA ligase; AMP complex 96.3 0.00064 2.2E-08 80.3 0.0 79 319-398 585-664 (667)
81 2k6g_A Replication factor C su 96.2 0.013 4.5E-07 53.7 8.0 77 466-565 31-108 (109)
82 2owo_A DNA ligase; protein-DNA 95.9 0.0013 4.5E-08 77.7 0.0 75 319-393 595-670 (671)
83 2ebu_A Replication factor C su 95.8 0.02 6.9E-07 52.7 7.6 78 465-565 20-98 (112)
84 2cok_A Poly [ADP-ribose] polym 95.5 0.035 1.2E-06 51.2 7.9 85 466-572 9-104 (113)
85 3qwu_A DNA ligase; structural 93.6 0.037 1.3E-06 60.8 3.8 59 33-91 150-222 (370)
86 2vug_A PAB1020; RNA, ligase, A 93.4 0.12 4.2E-06 57.4 7.4 71 32-110 171-253 (389)
87 4gns_A Chitin biosynthesis pro 92.4 0.22 7.5E-06 48.6 6.8 84 322-405 162-253 (290)
88 3huf_A DNA repair and telomere 92.1 0.097 3.3E-06 56.3 4.3 68 322-393 113-186 (325)
89 3vnn_A DNA ligase 4; non-homol 88.8 0.072 2.5E-06 50.7 -0.3 49 11-62 74-135 (139)
90 3qbz_A DDK kinase regulatory s 87.3 0.99 3.4E-05 43.7 6.5 61 465-525 56-119 (160)
91 3t7k_A RTT107, regulator of TY 86.4 0.8 2.7E-05 47.6 5.7 71 498-579 40-122 (256)
92 3oq0_A DBF4, protein DNA52; DD 84.0 2.7 9.1E-05 40.3 7.7 61 464-524 17-80 (151)
93 3oq4_A DBF4, protein DNA52; DD 82.4 3.7 0.00013 38.6 7.8 56 469-524 6-63 (134)
94 4gns_A Chitin biosynthesis pro 76.5 5.5 0.00019 38.9 7.2 94 468-579 162-257 (290)
95 3huf_A DNA repair and telomere 73.1 5.1 0.00017 43.1 6.5 59 495-564 127-187 (325)
96 1dgs_A DNA ligase; AMP complex 62.8 1.6 5.3E-05 51.7 0.0 75 466-565 586-661 (667)
97 2owo_A DNA ligase; protein-DNA 57.8 2.1 7.3E-05 50.6 0.0 74 466-563 596-670 (671)
98 3qbz_A DDK kinase regulatory s 35.4 32 0.0011 33.2 4.2 49 320-368 57-117 (160)
99 2k2w_A Recombination and DNA r 31.3 50 0.0017 30.4 4.6 34 319-355 11-44 (118)
100 2k2w_A Recombination and DNA r 30.2 49 0.0017 30.4 4.3 35 464-511 10-44 (118)
No 1
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=100.00 E-value=1e-44 Score=385.54 Aligned_cols=248 Identities=25% Similarity=0.439 Sum_probs=203.6
Q ss_pred CCCCCccCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhHHhHhcCC--CeeecchHHHHHhc
Q 003386 317 GETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG--DVIHYSWVLDCCSQ 394 (824)
Q Consensus 317 ~~s~lF~Gl~FcV~~~~~~~sk~eLeklI~~~GG~vv~n~~~s~Th~Ia~~~~t~K~~~a~~~~--dIV~p~WV~DCI~~ 394 (824)
++++||+|+.|||+++....++++|+++|.+|||++++|+++ .||||++++.+.|++.+++++ +||+|+||+||+++
T Consensus 6 ~~s~lF~G~~f~V~sg~~~~~k~~L~~lI~~~GG~v~~n~~~-~t~~iIa~~~~~k~~~~~~~g~~~IV~p~Wv~Dci~~ 84 (263)
T 3ii6_X 6 KISNIFEDVEFCVMSGTDSQPKPDLENRIAEFGGYIVQNPGP-DTYCVIAGSENIRVKNIILSNKHDVVKPAWLLECFKT 84 (263)
T ss_dssp CCCCTTTTCEEEECCCC--CCHHHHHHHHHHTTCEECSSCCT-TEEEEECSSCCHHHHHHHHSCSCCEECHHHHHHHHHH
T ss_pred cCcccCCCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCCC-CEEEEEeCCCCHHHHHHHhcCCCCEeehHHHHHHHhc
Confidence 578999999999999888889999999999999999999985 577777788889999998864 99999999999999
Q ss_pred CccCCCCccccccCChhhHhhhhhhccccCCCccCCCChHHHHHHHhccCCCCCc------chhHHHhhhcCCC-CCCCC
Q 003386 395 KKLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDP------KTIDYYKKKYCPQ-DKWSC 467 (824)
Q Consensus 395 ~~lLp~eP~~ll~~S~~t~~~~~~~~D~yGDSy~~dit~~~L~~ll~~~~~se~~------~~i~~l~~~~~~~-~~~~l 467 (824)
+++||++|+|++++++++++.+++++|+|||||+.++|+++|+.+|++|+..... ..+++++.+++.+ .++.|
T Consensus 85 ~~llp~~p~~~~~~~~~~~~~~~~~~D~~GDsy~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 164 (263)
T 3ii6_X 85 KSFVPWQPRFMIHMCPSTKEHFAREYDCYGDSYFIDTDLNQLKEVFSGIKNSNEQTPEEMASLIADLEYRYSWDCSPLSM 164 (263)
T ss_dssp TSCCCCCGGGEEECCHHHHHHTTTTBCTTSCBSSSCCCHHHHHHHHHSCCCCCSCCHHHHHHHHHHHHHHHTCTTCGGGT
T ss_pred CCcCCCCHHHHhhCCHHHHHHHHHhccccCCccCCcCCHHHHHHHHHhCcccccCCchhhHHHHHHHHHhhcccCCcchh
Confidence 9999999999999999999999999999999999999999999999999764322 2356677666654 58899
Q ss_pred CCCeEEEEccCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCCC-ceEEEEecCCCcccchhhhHHHHHHHhhhhcc
Q 003386 468 FHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLAN-ATHVVVLSVLGYDVNFNSLTESFTAREKHLLW 546 (824)
Q Consensus 468 F~gc~~YL~g~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~ls~-vTHVVV~~~~~~~~~~~~Lr~~l~~~~~~~~~ 546 (824)
|+||+|||++++.. +.+...+....+++++.+|+++||++++.+++ ||||||.+..++...++.+++ ..
T Consensus 165 F~~~~vy~~~~~~~-~~~~~~i~~~~l~~~~~~i~~~GG~v~~~l~~~vTHVVv~~~~~r~~~~~~~~~---------~~ 234 (263)
T 3ii6_X 165 FRRHTVYLDSYAVI-NDLSTKNEGTRLAIKALELRFHGAKVVSCLAEGVSHVIIGEDHSRVADFKAFRR---------TF 234 (263)
T ss_dssp TTTCEEEECCBSST-TCGGGBCCSSHHHHHHHHHHHTTCEEESSCCTTCCEEEECSCCTTHHHHHHHHH---------TC
T ss_pred hCCeEEEEeccccc-CCcccccchhHHHHHHHHHHccCCEEecCCCCCceEEEECCCCccHHHHHHHHh---------hc
Confidence 99999999987532 22222233345678899999999999999994 999999864322111222221 12
Q ss_pred CCccEEecccHHHHHHHhCCccCCCCCCC
Q 003386 547 NKKLHVVRSQWLEDCLAKEQKSEEYEYSL 575 (824)
Q Consensus 547 ~~~~~IVt~~WLedCi~~g~~l~Ee~Y~v 575 (824)
.+.++||+++||++||++|+++||++|.|
T Consensus 235 ~~~~~iV~~~Wv~dci~~~~~l~E~~Y~i 263 (263)
T 3ii6_X 235 KRKFKILKESWVTDSIDKCELQEENQYLI 263 (263)
T ss_dssp SSCCEEEETHHHHHHHHTTSCCCGGGTBC
T ss_pred CCCCEEeChHHHHHHHHcCCcCCHhhCCC
Confidence 46799999999999999999999999975
No 2
>3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-43 Score=411.09 Aligned_cols=244 Identities=25% Similarity=0.449 Sum_probs=189.2
Q ss_pred cccccChHHHhhccccCCCchhhhccCccEEEEEccHH-------------HHHHHHHHhhcCCCCceEEe----cCCHH
Q 003386 6 FAQLMTLSVLHDKDNACNISTVAMNDGICVCVHVYMLS-------------QLRSQIMAADQTGEPCWSLV----AHNVD 68 (824)
Q Consensus 6 ~~~~~~fq~l~~r~~~~~~~~~~~~~~~~v~~~~FDll-------------~lr~~L~~l~~~~~~~~~~~----~~~~~ 68 (824)
.|+.+|||.|+.+.++. + ...++|||+|||| +||++|++++.+..+.+.++ ..+.+
T Consensus 314 ~g~~~~F~~L~~~~~~~------~-~~~~v~~~vFDlL~l~G~~L~~~Pl~eRr~~L~~~~~~~~~~i~~~~~~~~~~~~ 386 (579)
T 3l2p_A 314 TGKPLPFGTLGVHKKAA------F-QDANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKRVTKAL 386 (579)
T ss_dssp TCCBCCGGGGSHHHHHH------C-SSCCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHCCCBTTTEEECCEEEECSHH
T ss_pred CCcccCHHHHHHHhhhh------c-ccCCeEEEEEEeeccCCCccccCCHHHHHHHHHHHhhcCCCeEEEeeeEEcCCHH
Confidence 37889999998764321 2 2569999999986 46899999997655566553 35788
Q ss_pred HHHHHHHHHHhCCCceEEEeCCCCCCcCCCCCCCeEEEccccccC---CCcccEEEEEEEeCCCCCCCCcceEEEEEecC
Q 003386 69 EVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRA---GSDLDVLIIGGYYGSGRRGGEVAQFLVALAER 145 (824)
Q Consensus 69 di~~~~~~ai~~g~EGIV~K~~dS~Y~pg~Rs~~WiKiK~~y~~~---ge~lDlvVIGG~~g~Grr~g~~~sfllGv~~~ 145 (824)
++.++|+++++.|+||||+|+++|+|.||+| +|+|+|++|+++ ++++|+||||||+|+|+++|.+|+|+||+|++
T Consensus 387 ~~~~~~~~a~~~g~EGlv~K~~ds~Y~~Grr--~WlK~K~~y~~~g~~~~t~D~vViG~~~G~Gkr~g~~g~lllg~~d~ 464 (579)
T 3l2p_A 387 DLADMITRVIQEGLEGLVLKDVKGTYEPGKR--HWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDP 464 (579)
T ss_dssp HHHHHHHHHHHTTCCCEEEEESSCCCCTTCE--EEEEECTTTCC---CCEEEEEEEEEEECCCTTSCSSCCEEEEEEECT
T ss_pred HHHHHHHHHHHhCCCceEEecCcCCCCCCCe--eeEEEechhhccccccccccEEEEEEEeCCCCCCCceeEEEEEEEeC
Confidence 9999999999999999999999999999987 899999999974 58999999999999999999999999999986
Q ss_pred CCCCCCCccEEEEEEeCCCCCHHHHHHHHHHhccchhccCCCCCCCCcccccCCCCCCCCcEEEeCCcceEEEEEEeccc
Q 003386 146 PAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIR 225 (824)
Q Consensus 146 ~~~~~~~~~~~~~gkVGtGfs~~e~~~L~~~L~~~~~~~~~~~~~pP~~~~~~~~~~~~pdvWi~~P~~svVvEVka~~~ 225 (824)
++ +.|+++|+||||||++++++|.++|.++++.. .+. .+|.|+... ...+|++|+..|..++|+||+++..
T Consensus 465 ~~-----~~l~~vgkvgtGftd~~l~~l~~~l~~~~~~~-~~~-~~~~~~~~~--~~~~pd~~~~~P~~~~V~Ei~~~~i 535 (579)
T 3l2p_A 465 GS-----QKWCTVTKCAGGHDDATLARLQNELDMVKISK-DPS-KIPSWLKVN--KIYYPDFIVPDPKKAAVWEITGAEF 535 (579)
T ss_dssp TT-----SSEEEEEEECTTCCHHHHHHTTTSSCCCCCCC------------------------------CEEEEEEESCE
T ss_pred CC-----CeEEEecCccCCCCHHHHHHHHHHhhcccccc-CCc-cCCceeecC--CCCCCcEEEecCCCCeEEEEEeeEE
Confidence 43 37999999999999999999999999987752 122 234466543 3468999984498789999998654
Q ss_pred cccccccc-CCceeeccEEeeEecCCCccCcCCHHHHHHHHHhc
Q 003386 226 TIRSEVFS-APYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSS 268 (824)
Q Consensus 226 ~~~s~~~~-~g~tLRfPr~~~iR~DK~~~e~~t~~el~el~~~~ 268 (824)
..|..|+ .|++||||||.++|+||+|+||+|++++.+|++.+
T Consensus 536 -~~S~~~~~~G~sLRFPR~~riR~DK~~~ea~t~~~l~~l~~~~ 578 (579)
T 3l2p_A 536 -SKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLS 578 (579)
T ss_dssp -EECTTSSSTTEEESSCEECCCCSSCCSSSSCBHHHHHHHHHTC
T ss_pred -eecCCcccCCEEEECCeEEEEeCCCChHHCCCHHHHHHHHhhc
Confidence 3577776 79999999999999999999999999999999754
No 3
>1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1
Probab=100.00 E-value=1.6e-41 Score=402.40 Aligned_cols=243 Identities=27% Similarity=0.519 Sum_probs=205.3
Q ss_pred ccccChHHHhhccccCCCchhhhccCccEEEEEccHH-------------HHHHHHHHhhcCCCCceEE----ecCCHHH
Q 003386 7 AQLMTLSVLHDKDNACNISTVAMNDGICVCVHVYMLS-------------QLRSQIMAADQTGEPCWSL----VAHNVDE 69 (824)
Q Consensus 7 ~~~~~fq~l~~r~~~~~~~~~~~~~~~~v~~~~FDll-------------~lr~~L~~l~~~~~~~~~~----~~~~~~d 69 (824)
|+++|||.|++|.+.. ++.. ...++++|++|||| +||++|++++....+.+.+ ..++.++
T Consensus 399 g~~~~F~~L~~r~r~~-~~~~--~~~~~v~~~vFDlL~l~G~~l~~~Pl~eRr~~L~~~~~~~~~~i~~~~~~~~~~~~~ 475 (688)
T 1x9n_A 399 KQIQPFQVLTTRKRKE-VDAS--EIQVQVCLYAFDLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDIEQ 475 (688)
T ss_dssp CSBCCHHHHTTSCSSC-CCGG--GCCSEEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCCBTTTEEECCEECCCCHHH
T ss_pred CCcCCHHHHHHHhhcc-cchh--hcccceEEEEEechhhcCCccccCCHHHHHHHHHHhhccCCCcEEEEeeEecCCHHH
Confidence 5679999999996554 3222 23789999999986 5689999999765444443 4567899
Q ss_pred HHHHHHHHHhCCCceEEEeCC--CCCCcCCCCCCCeEEEccccccC-CCcccEEEEEEEeCCCCCCCCcceEEEEEecCC
Q 003386 70 VEKFFKETIENRDEGIVLKDL--GSKWEPGDRSGKWLKLKPEYIRA-GSDLDVLIIGGYYGSGRRGGEVAQFLVALAERP 146 (824)
Q Consensus 70 i~~~~~~ai~~g~EGIV~K~~--dS~Y~pg~Rs~~WiKiK~~y~~~-ge~lDlvVIGG~~g~Grr~g~~~sfllGv~~~~ 146 (824)
+.++|+.++++|+||||+|++ +|+|.||+|+.+|+|+|++|+++ ++++|+||||||+|+|+++|.+|+|+|||++++
T Consensus 476 ~~~~~~~a~~~g~EGlV~K~~~~ds~Y~~GkRs~~WlK~K~~y~~~~~dt~D~vVIG~~~g~Gkr~g~~gslllg~~d~~ 555 (688)
T 1x9n_A 476 IAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLASYDED 555 (688)
T ss_dssp HHHHHHHHHHTSEEEEEEEESSSSCSSCTTTCSEEEEEEEHHHHHSSCEEEEEEEEEEEEBCTTSBTSEEEEEEEEEETT
T ss_pred HHHHHHHHHhcCCceeEEeecccCCCCCCCCcCchHheeehhhhccccccccEEEEEEEeCCCCCCCceeeEEEEEEeCC
Confidence 999999999999999999999 99999999999999999999984 899999999999999999999999999999875
Q ss_pred CCCCCCccEEEEEEeCCCCCHHHHHHHHHHhccchhccCCCCCCCCcccccCCCCCCCCcEEEeCCcceEEEEEEecccc
Q 003386 147 APDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRT 226 (824)
Q Consensus 147 ~~~~~~~~~~~~gkVGtGfs~~e~~~L~~~L~~~~~~~~~~~~~pP~~~~~~~~~~~~pdvWi~~P~~svVvEVka~~~~ 226 (824)
+ +.|++||+||||||++++++|.+.|+++++. .||.++.+. ...+|++||+ |. .|+||+++..
T Consensus 556 ~-----~~l~~vgkvgtGftd~~~~~l~~~l~~~~~~------~~~~~~~~~--~~~~p~vwv~-P~--~V~EV~~~e~- 618 (688)
T 1x9n_A 556 S-----EELQAICKLGTGFSDEELEEHHQSLKALVLP------SPRPYVRID--GAVIPDHWLD-PS--AVWEVKCADL- 618 (688)
T ss_dssp T-----TEEEEEEEECCSCCHHHHHHHHHHHHHTEES------SCCTTEECS--SSCCCSEEEC-SC--CEEEEEESEE-
T ss_pred C-----CeEEEEeeeCCCCCHHHHHHHHHHhhccccC------CCCCccccC--CCCCCcEEeC-Cc--EEEEEEEEee-
Confidence 3 3899999999999999999999999999875 233344433 2568999998 87 4899997544
Q ss_pred cccccccC---------CceeeccEEeeEecCCCccCcCCHHHHHHHHHhcC
Q 003386 227 IRSEVFSA---------PYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSN 269 (824)
Q Consensus 227 ~~s~~~~~---------g~tLRfPr~~~iR~DK~~~e~~t~~el~el~~~~~ 269 (824)
..|..|++ |++||||||.+||+||+|++|+|++++.+|+.++.
T Consensus 619 t~S~~~~~~~g~~~~~~G~sLRfPrf~riR~DK~~~ea~t~~~l~~l~~~q~ 670 (688)
T 1x9n_A 619 SLSPIYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATTSAQVACLYRKQS 670 (688)
T ss_dssp EEESSCCTTTTTSCSSCEEEEESCEEEEECTTCCGGGSCBHHHHHHHHHHHC
T ss_pred eccccccccccccccCCCceEECcEEEEEeCCCChHHCCCHHHHHHHHHHhH
Confidence 34677765 88999999999999999999999999999997554
No 4
>2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A*
Probab=100.00 E-value=4.7e-41 Score=395.34 Aligned_cols=242 Identities=28% Similarity=0.500 Sum_probs=204.6
Q ss_pred cccccChHHHhhccccCCCchhhhccCccEEEEEccHH-------------HHHHHHHHhhcCCCCceE----EecCCHH
Q 003386 6 FAQLMTLSVLHDKDNACNISTVAMNDGICVCVHVYMLS-------------QLRSQIMAADQTGEPCWS----LVAHNVD 68 (824)
Q Consensus 6 ~~~~~~fq~l~~r~~~~~~~~~~~~~~~~v~~~~FDll-------------~lr~~L~~l~~~~~~~~~----~~~~~~~ 68 (824)
.|+++|||.|++| +++.. ...+....+++|++|||| +||++|++++... +.+. +..++.+
T Consensus 338 ~g~~l~F~~L~~r-~~~~~-~~~~~~~~~v~~~vFDlL~l~G~~l~~~pl~eRr~~L~~~~~~~-~~i~~~~~~~~~~~~ 414 (621)
T 2hiv_A 338 SGEMRPFQELMHR-KRKSD-IYEAIKEYPVNVFLFDLMYYEDVDYTTKPLEARRKLLESIVKPN-DYVKIAHHIQANNVE 414 (621)
T ss_dssp TCCBCCTHHHHHH-HHCSC-HHHHHHHSCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCCC-SSEEECCEEEESSHH
T ss_pred CCCcCCHHHHhhh-ccccc-hhhhcccCceEEEEEeccccCCCccccCCHHHHHHHHHHHhCcC-CcEEEeeeEEeCCHH
Confidence 4788999999999 44433 223334779999999986 5689999998764 3443 3567789
Q ss_pred HHHHHHHHHHhCCCceEEEeCC--CCCCcCCCCCCCeEEEcccccc-CCCcccEEEEEEEeCCCCCCCCcceEEEEEecC
Q 003386 69 EVEKFFKETIENRDEGIVLKDL--GSKWEPGDRSGKWLKLKPEYIR-AGSDLDVLIIGGYYGSGRRGGEVAQFLVALAER 145 (824)
Q Consensus 69 di~~~~~~ai~~g~EGIV~K~~--dS~Y~pg~Rs~~WiKiK~~y~~-~ge~lDlvVIGG~~g~Grr~g~~~sfllGv~~~ 145 (824)
++.++|+.++++|+||||+|++ +|+|.||+|+.+|+|+|++|++ +|+++|+||||+++|+|+++|.+|+|+|||+++
T Consensus 415 ~~~~~~~~~~~~g~EGlv~K~~~~ds~Y~~G~Rs~~WlK~K~~~~~~~~dt~D~vViG~~~g~Gkr~g~~g~lllg~~d~ 494 (621)
T 2hiv_A 415 DLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYGKGKRGGKISSLLMAAYNP 494 (621)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCSTTCCCCTTCEEEEEEEEETTCTTSSCEEEEEEEEEEEECSGGGTTSEEEEEEEEEET
T ss_pred HHHHHHHHHHhcCCceEEEEecCCCCCccCCCcCCCeEEEechhccCcCceeEEEEEEEEcCCCCCCCcccceEEEEEeC
Confidence 9999999999999999999999 9999999999999999999998 488999999999999999999999999999986
Q ss_pred CCCCCCCccEEEEEEeCCCCCHHHHHHHHHHhccchhccCCCCCCCCcccccCCCCCCCCcEEEeCCcceEEEEEEeccc
Q 003386 146 PAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIR 225 (824)
Q Consensus 146 ~~~~~~~~~~~~~gkVGtGfs~~e~~~L~~~L~~~~~~~~~~~~~pP~~~~~~~~~~~~pdvWi~~P~~svVvEVka~~~ 225 (824)
++ +.|++||+||+|||++++++|.+.|+++++.. .||.+ . ...+|++||+ |. .|+||+++..
T Consensus 495 ~~-----~~l~~vgkvgtGftd~~~~~l~~~l~~~~~~~-----~p~~~---~--~~~~~~vwv~-P~--~V~EV~~~~~ 556 (621)
T 2hiv_A 495 KT-----DSFESVCKVASGFSDEQLDELQKKLMEIKRDV-----KHPRV---N--SKMEPDIWVE-PV--YVAEIIGSEI 556 (621)
T ss_dssp TT-----TEEEEEEEECBSCCHHHHHHHHHHHHTTEESS-----CCTTE---E--CSSCCSEEEC-SC--CEEEEEESEE
T ss_pred CC-----CeEEEEeeeCCCCCHHHHHHHHHHHhhhccCC-----CCCCc---c--cCCCceEEec-Cc--eEEEEEEEEE
Confidence 53 38999999999999999999999999998761 23321 1 2467999999 97 5899998654
Q ss_pred cccccccc---------CCceeeccEEeeEecCCCccCcCCHHHHHHHHHhcC
Q 003386 226 TIRSEVFS---------APYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSSN 269 (824)
Q Consensus 226 ~~~s~~~~---------~g~tLRfPr~~~iR~DK~~~e~~t~~el~el~~~~~ 269 (824)
+ .+..|+ .|++||||||.+||+||+|+||+|++++.+|+..+.
T Consensus 557 t-~s~~~~a~~~~~~~~~G~sLRfPrf~r~R~DK~~~ea~t~~~l~~l~~~q~ 608 (621)
T 2hiv_A 557 T-ISPLHTCCQDVVEKDAGLSIRFPRFIRWRDDKSPEDATTTDEILEMYNKQP 608 (621)
T ss_dssp E-EETTCCTTTTTSSTTCEEEEESCEEEEECTTCCGGGSCBHHHHHHHHHHSC
T ss_pred E-cCcccccccccccCCCCceEEcCEEEEEeCCCChHHCCCHHHHHHHHHHhh
Confidence 3 467777 578999999999999999999999999999997543
No 5
>3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus}
Probab=100.00 E-value=8.8e-41 Score=388.14 Aligned_cols=229 Identities=24% Similarity=0.422 Sum_probs=196.6
Q ss_pred ccccChHHHhhccccCCCchhhhccCccEEEEEccHH------------HHHHHHHHhhcCCCCceEE----ecCCHHHH
Q 003386 7 AQLMTLSVLHDKDNACNISTVAMNDGICVCVHVYMLS------------QLRSQIMAADQTGEPCWSL----VAHNVDEV 70 (824)
Q Consensus 7 ~~~~~fq~l~~r~~~~~~~~~~~~~~~~v~~~~FDll------------~lr~~L~~l~~~~~~~~~~----~~~~~~di 70 (824)
|+++|||.|++|.+++.... .+..++|++|++|||| +||++|++++.. .+.+.+ ...+.+++
T Consensus 308 g~~~~F~~L~~r~~~~~~~~-~~~~~~pv~~~vFDlL~l~G~l~~~pl~eRr~~L~~~~~~-~~~i~~~~~~~~~~~~~~ 385 (558)
T 3gde_A 308 GKPMPFQHVLRRFRRKHDVA-KMVEKIPLEAHFFDILYHDGECIDLPLRERRKLLESAVNE-SEKIKLAKQIVTDSVDEV 385 (558)
T ss_dssp TEEECHHHHHHHHHC--CTH-HHHHHSCEEEEEEEEEEESSBCTTSBHHHHHHHHHHHBCC-CSSEEECCEEEESCHHHH
T ss_pred CcCCCHHHHHHHhccccchh-hHhhcCCeEEEEEEEEeeCCCccCCCHHHHHHHHHHhcCC-CCeEEEeeeEecCCHHHH
Confidence 67889999999976664423 3334789999999984 568999999975 334433 56788999
Q ss_pred HHHHHHHHhCCCceEEEeCCCCCCcCCCCCCCeEEEccccccCCCcccEEEEEEEeCCCCCCCCcceEEEEEecCCCCCC
Q 003386 71 EKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVALAERPAPDT 150 (824)
Q Consensus 71 ~~~~~~ai~~g~EGIV~K~~dS~Y~pg~Rs~~WiKiK~~y~~~ge~lDlvVIGG~~g~Grr~g~~~sfllGv~~~~~~~~ 150 (824)
.++|++++++|+||||+|+++|+|.||+|+.+|+|+||++ +++|+||||+++|+|+++|.+|+|+||++++++
T Consensus 386 ~~~~~~~~~~g~EGlv~K~~ds~Y~~G~Rs~~WlK~K~~~----~t~D~vViG~~~g~Gkr~g~~g~lllg~~d~~~--- 458 (558)
T 3gde_A 386 RKMYDEAISAGHEGVMIKLPSSPYIPGKRGKNWLKVKAIM----ETLDLVVVGGEWGEGKRSHWLSSFELACLDPVT--- 458 (558)
T ss_dssp HHHHHHHHHTTCCEEEEECTTCBCCTTCEEEEEEEEESSC----CCEEEEEEEEEECCTTGGGSEEEEEEEEECTTT---
T ss_pred HHHHHHHHHcCCceeEEecCCCCCCCCCcCCceEEEeccc----ceEEEEEEEEEeCCCCccCccceEEEEEeeCCC---
Confidence 9999999999999999999999999999999999999984 589999999999999999999999999998532
Q ss_pred CCccEEEEEEeCCCCCHHHHHHHHHHhccchhccCCCCCCCCcccccCCCCCCCCcEEEeCCcceEEEEEEecccccccc
Q 003386 151 YPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSE 230 (824)
Q Consensus 151 ~~~~~~~~gkVGtGfs~~e~~~L~~~L~~~~~~~~~~~~~pP~~~~~~~~~~~~pdvWi~~P~~svVvEVka~~~~~~s~ 230 (824)
+.|++||+||||||++++++|.+.|+++++.. ..|++||+ |. +|+||+++.. ..|.
T Consensus 459 --g~l~~vgkvgsGftd~~~~~l~~~l~~~~~~~------------------~~~~vwv~-P~--lV~EV~~~~~-t~s~ 514 (558)
T 3gde_A 459 --GKLLKVGRVATGFTEEDLEELTEMFRPLIVSQ------------------QGKKVEFI-PK--YVFEVAYQEI-QKSP 514 (558)
T ss_dssp --CCEEEEEEECSSCCHHHHHHHHHHHGGGEEEE------------------ETTEEEEC-SC--CEEEEECSEE-EECS
T ss_pred --CEEEEEeeeCCCCCHHHHHHHHHHHHhhcccC------------------CCCcEEec-Cc--EEEEEEEeee-ecCC
Confidence 38999999999999999999999999987651 23689999 97 5899998654 3588
Q ss_pred cccCCceeeccEEeeEecCCCccCcCCHHHHHHHHHhc
Q 003386 231 VFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSS 268 (824)
Q Consensus 231 ~~~~g~tLRfPr~~~iR~DK~~~e~~t~~el~el~~~~ 268 (824)
.|++|++||||||+++|+||+|+||+|++++.+|+..+
T Consensus 515 ~~~~g~~LRfPrf~r~R~DK~~~ea~t~~~l~~l~~~q 552 (558)
T 3gde_A 515 KYESGYALRFPRFVRLRDDKDVDEADTIERVENLYKLQ 552 (558)
T ss_dssp SSTTSEEEESCEEEEECTTCCGGGSCBHHHHHHHHHTT
T ss_pred ccCCCCEEECcEEEEEECCCChHHCCCHHHHHHHHHHh
Confidence 89999999999999999999999999999999999743
No 6
>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A*
Probab=100.00 E-value=3.4e-40 Score=384.36 Aligned_cols=230 Identities=26% Similarity=0.494 Sum_probs=199.0
Q ss_pred cccccChHHHhhccccCCCchhhhccCccEEEEEccHH-------------HHHHHHHHhhcCCCCceE----EecCCHH
Q 003386 6 FAQLMTLSVLHDKDNACNISTVAMNDGICVCVHVYMLS-------------QLRSQIMAADQTGEPCWS----LVAHNVD 68 (824)
Q Consensus 6 ~~~~~~fq~l~~r~~~~~~~~~~~~~~~~v~~~~FDll-------------~lr~~L~~l~~~~~~~~~----~~~~~~~ 68 (824)
-|+++|||.|++|.+++.. ...+...++++|++|||| +||++|++++... +.+. +..++.+
T Consensus 306 ~g~~~~F~~L~~r~~~~~~-~~~~~~~~~~~~~vFDlL~l~g~~l~~~pl~eRr~~L~~~~~~~-~~i~~~~~~~~~~~~ 383 (561)
T 2cfm_A 306 NGRPLPFQYVLRRFRRKHN-IEEMMEKIPLELNLFDVLYVDGQSLIDTKFIDRRRTLEEIIKQN-EKIKVAENLITKKVE 383 (561)
T ss_dssp TSSBCCTHHHHHHHHCCSC-HHHHHHHSCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCCC-SSEEECCEEEESCHH
T ss_pred CCcccCHHHHHHHhhcccc-hhhhcccCceEEEEEEEEeECCcCcccCCHHHHHHHHHHHhCcC-CcEEEeeeEEcCCHH
Confidence 4788999999999766655 333444789999999986 4689999998764 3443 3567789
Q ss_pred HHHHHHHHHHhCCCceEEEeCCCCCCcCCCCCCCeEEEccccccCCCcccEEEEEEEeCCCCCCCCcceEEEEEecCCCC
Q 003386 69 EVEKFFKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVALAERPAP 148 (824)
Q Consensus 69 di~~~~~~ai~~g~EGIV~K~~dS~Y~pg~Rs~~WiKiK~~y~~~ge~lDlvVIGG~~g~Grr~g~~~sfllGv~~~~~~ 148 (824)
++.++|+.++++|+||||+|+++|+|.||+|+.+|+|+|++| +++|+||||+++|+|+++|.+|+|+||++++++
T Consensus 384 ~~~~~~~~~~~~g~EGlv~K~~ds~Y~~G~Rs~~WlK~K~~~----dt~D~vViG~~~g~Gkr~g~~g~lllg~~d~~~- 458 (561)
T 2cfm_A 384 EAEAFYKRALEMGHEGLMAKRLDAVYEPGNRGKKWLKIKPTM----ENLDLVIIGAEWGEGRRAHLFGSFILGAYDPET- 458 (561)
T ss_dssp HHHHHHHHHHHTTCCEEEEECTTCCCCTTCEEEEEEEECSSC----CCEEEEEEEEEECSGGGTTSEEEEEEEEECTTT-
T ss_pred HHHHHHHHHHHcCCceeEEeCCCCCCCCCCcCCCeEEEcccC----cceeEEEEEEEeCCCCCCCccceEEEEEEeCCC-
Confidence 999999999999999999999999999999999999999999 579999999999999999999999999998653
Q ss_pred CCCCccEEEEEEeCCCCCHHHHHHHHHHhccchhccCCCCCCCCcccccCCCCCCCCcEEEeCCcceEEEEEEecccccc
Q 003386 149 DTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIR 228 (824)
Q Consensus 149 ~~~~~~~~~~gkVGtGfs~~e~~~L~~~L~~~~~~~~~~~~~pP~~~~~~~~~~~~pdvWi~~P~~svVvEVka~~~~~~ 228 (824)
+.|++||+||+|||++++++|.+.++++++. ...|++||+ |. .|+||+++.. ..
T Consensus 459 ----~~~~~vgkvgsGftd~~~~~l~~~l~~~~~~------------------~~~~~~wv~-P~--~V~EV~~~~~-t~ 512 (561)
T 2cfm_A 459 ----GEFLEVGKVGSGFTDDDLVEFTKMLKPLIIK------------------EEGKRVWLQ-PK--VVIEVTYQEI-QK 512 (561)
T ss_dssp ----CCEEEEEEECSSCCHHHHHHHHHHHGGGEEE------------------EETTEEEEC-SC--CEEEEECSEE-EC
T ss_pred ----CeEEEEeEeCCCCCHHHHHHHHHHHhhhccc------------------cCCCeEEeC-Cc--eEEEEEEEEE-Ec
Confidence 3799999999999999999999999988754 134789998 97 5899998654 35
Q ss_pred cccccCCceeeccEEeeEecCCCccCcCCHHHHHHHHHhc
Q 003386 229 SEVFSAPYSLRFPRIDRVRYDKPWHDCLDVQSFVELVHSS 268 (824)
Q Consensus 229 s~~~~~g~tLRfPr~~~iR~DK~~~e~~t~~el~el~~~~ 268 (824)
+..|+.|++||||||.++|+||+|+||+|++++.+|+..+
T Consensus 513 s~~~~~G~~lRfPrf~r~R~DK~~~ea~t~~~l~~l~~~q 552 (561)
T 2cfm_A 513 SPKYRSGFALRFPRFVALRDDKGPEDADTIERIAQLYELQ 552 (561)
T ss_dssp CSSSTTSCEEESCEEEEECTTSCGGGSCBHHHHHHHHHHH
T ss_pred CCccCCCCEEEccEEEEEeCCCChHHCCCHHHHHHHHHHh
Confidence 7788899999999999999999999999999999999643
No 7
>1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold, nucleotidyl transferase, structural genomic protein structure initiative; HET: APK MSE; 2.40A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.5e-38 Score=345.68 Aligned_cols=208 Identities=20% Similarity=0.283 Sum_probs=167.2
Q ss_pred ccccChHHHhhccccCCCchhhhccCccEEEEEccHH-------------HHHHHHHHhhcCCCCceEEecCCHHHHHHH
Q 003386 7 AQLMTLSVLHDKDNACNISTVAMNDGICVCVHVYMLS-------------QLRSQIMAADQTGEPCWSLVAHNVDEVEKF 73 (824)
Q Consensus 7 ~~~~~fq~l~~r~~~~~~~~~~~~~~~~v~~~~FDll-------------~lr~~L~~l~~~~~~~~~~~~~~~~di~~~ 73 (824)
|++ |||.|++|.++. +++|++|||| +||++|++++... .+.++.+...++.++
T Consensus 89 g~~-~F~~l~~r~~~~-----------~~~~~vFDll~~~g~~l~~~pl~eRr~~L~~~~~~~--~i~~~~~~~~~~~~~ 154 (310)
T 1vs0_A 89 GVP-SFSQMQNRGRDT-----------RVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANAT--SLTVPELLPGDGAQA 154 (310)
T ss_dssp SCB-CHHHHHTCCTTS-----------CCEEEEEEEEEETTEECTTSCHHHHHHHHHHHHHHS--CCCCCCCCCSSHHHH
T ss_pred CCc-CHHHHHhhccCC-----------cEEEEEEEeEEECCcCcccCCHHHHHHHHHHhccCC--cEEECccCchHHHHH
Confidence 444 999999988654 4899999986 5688999998653 445555555679999
Q ss_pred HHHHHhCCCceEEEeCCCCCCcCCCCCCCeEEEccccccCCCcccEEEEEEEeCCCCCCCCcceEEEEEecCCCCCCCCc
Q 003386 74 FKETIENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVALAERPAPDTYPR 153 (824)
Q Consensus 74 ~~~ai~~g~EGIV~K~~dS~Y~pg~Rs~~WiKiK~~y~~~ge~lDlvVIGG~~g~Grr~g~~~sfllGv~~~~~~~~~~~ 153 (824)
|+.++++|+||||+|+.+|+|.+|+|+.+|+|+|++| ++|++|||+++|+|+++|.+|+|+||+++++
T Consensus 155 ~~~~~~~g~EGlv~K~~ds~Y~~G~Rs~~WlK~K~~~-----~~D~vv~G~~~g~G~r~g~~g~lllg~~d~~------- 222 (310)
T 1vs0_A 155 FACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWN-----TQEVVIGGWRAGEGGRSSGVGSLLMGIPGPG------- 222 (310)
T ss_dssp HHHHHHTTCCEEEEEETTCCCCTTCEEEEEEEEESSE-----EEEEEEEEEEC--------CCEEEEEEEETT-------
T ss_pred HHHHHHcCCceEEEeCCCCCcCCCCcChHHhccchhe-----EEEEEEEEEEcCCCCccCccceEEEEEEcCC-------
Confidence 9999999999999999999999999999999999999 8999888877899999899999999999754
Q ss_pred cEEEEEEeCCCCCHHHHHHHHHHhccchhccCCCCCCCCcccccCCCCCCCCcEEEeCCcceEEEEEEeccccccccccc
Q 003386 154 RFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFS 233 (824)
Q Consensus 154 ~~~~~gkVGtGfs~~e~~~L~~~L~~~~~~~~~~~~~pP~~~~~~~~~~~~pdvWi~~P~~svVvEVka~~~~~~s~~~~ 233 (824)
.|+++|+||||||++++++|.+.|+++++. .|| |.........+|++||+ |. +|+||++ ..++
T Consensus 223 g~~~vgkvgtGftd~~~~~l~~~l~~~~~~------~~p-~~~~~~~~~~~~~~wv~-P~--~V~ev~~-------~~~t 285 (310)
T 1vs0_A 223 GLQFAGRVGTGLSERELANLKEMLAPLHTD------ESP-FDVPLPARDAKGITYVK-PA--LVAEVRY-------SEWT 285 (310)
T ss_dssp EEEEEEEECSSCCHHHHHHHHHHHGGGBCS------SCS-BSSCCCHHHHTTEEEBC-TT--CEEEEEE-------SCBC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHhhccC------CCC-ccccCCcccCCCCEEEc-CC--EEEEEEE-------EEEc
Confidence 399999999999999999999999999875 244 43211112457899998 98 4889985 4557
Q ss_pred CCceeeccEEeeEecCCCccCcCC
Q 003386 234 APYSLRFPRIDRVRYDKPWHDCLD 257 (824)
Q Consensus 234 ~g~tLRfPr~~~iR~DK~~~e~~t 257 (824)
.+++||||||++||+||+|++|+.
T Consensus 286 ~~g~lRfP~f~r~R~DK~~~~~~~ 309 (310)
T 1vs0_A 286 PEGRLRQSSWRGLRPDKKPSEVVR 309 (310)
T ss_dssp TTSCBTTCEEEEECTTSCGGGCCC
T ss_pred CCCeEEceEEEEEeCCCCHHHhCC
Confidence 789999999999999999999974
No 8
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-38 Score=332.94 Aligned_cols=246 Identities=18% Similarity=0.287 Sum_probs=170.2
Q ss_pred CCCCccCeEEEEEcCC------CCCCHHHHHHHHHHcCCEEEecCCCCc----eEEEEecCCChhHHhHhcCC-Ceeecc
Q 003386 318 ETSIFSDMVFYFVNVP------PAYSLDSLHKMVVENGGTFSMNLNNSV----THCVAADNKGLKYEAAKRRG-DVIHYS 386 (824)
Q Consensus 318 ~s~lF~Gl~FcV~~~~------~~~sk~eLeklI~~~GG~vv~n~~~s~----Th~Ia~~~~t~K~~~a~~~~-dIV~p~ 386 (824)
.++||+|+.|||+++. ...++++|+++|++|||++++++...+ +|+|++++.+++++.+...+ +||+|+
T Consensus 2 ~s~lF~g~~f~v~~~~~~p~~~~~~~~~~L~~li~~~GG~~~~~~~~~t~~~~~~~iI~~~~t~k~~~~~~~~~~vV~p~ 81 (264)
T 1z56_C 2 ISNIFAGLLFYVLSDYVTEDTGIRITRAELEKTIVEHGGKLIYNVILKRHSIGDVRLISCKTTTECKALIDRGYDILHPN 81 (264)
T ss_dssp -CCCCCTTCCCCSEEEECCCCCSSSSCCCTHHHHHHHHTTSCCCSSCCCCCSSCCEEEECSCCGGGGGGTTTTCCCBCSS
T ss_pred ccccCCCcEEEEEcCCCCccccccCCHHHHHHHHHHcCCEEeecCCCCccCccceEEEecCCcHHHHHHHhCCCCEEech
Confidence 5789999999997652 345889999999999999988765322 33344677889998887776 999999
Q ss_pred hHHHHHhcCccCCCCccccccCChhhHhhhhhhccccCCCccCCCChHHHHHHHhccCCCCCcchhHHHhhhc-CCCCCC
Q 003386 387 WVLDCCSQKKLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKY-CPQDKW 465 (824)
Q Consensus 387 WV~DCI~~~~lLp~eP~~ll~~S~~t~~~~~~~~D~yGDSy~~dit~~~L~~ll~~~~~se~~~~i~~l~~~~-~~~~~~ 465 (824)
||+|||+++++||++|+|+++.++.+++.++.++|+|||||+.++++++|+.++++|....... .++..+ ....+.
T Consensus 82 Wv~dci~~~~llp~~~y~~~~~~~~~~~~~~~~~d~~gdsy~~~~~~~~l~~~l~~~~~~~~~~---~~~~~~~~~~~~~ 158 (264)
T 1z56_C 82 WVLDCIAYKRLILIEPNYCFNVSQKMRAVAEKRVDCLGDSFENDISETKLSSLYKSQLSLPPMG---ELEIDSEVRRFPL 158 (264)
T ss_dssp TTHHHHSSCSCCCCCSCBSCCCGGGTHHHHGGGBCSSSCBSSSCCCHHHHHHTTSCCSCCCCCC---CCSSCCSCCCCCC
T ss_pred HHHHHhhcCCCCCCChHHhhcCCHHHHHHHHHhccccCCccccCCCHHHHHHHHHhcccccchh---hhhhhcccccCch
Confidence 9999999999999999999999999999999999999999999999999999999887532111 111111 223578
Q ss_pred CCCCCeEEEEccCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCCCceEEEEecCCCc--ccchhhhHHHHHHHhhh
Q 003386 466 SCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLANATHVVVLSVLGY--DVNFNSLTESFTAREKH 543 (824)
Q Consensus 466 ~lF~gc~~YL~g~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~ls~vTHVVV~~~~~~--~~~~~~Lr~~l~~~~~~ 543 (824)
.||+||+|||+++.. ...++.++..|+++||+++++++.+||+||..+.+. ......+++.+..+...
T Consensus 159 ~lF~g~~~yl~~~~~----------~~~~~~l~~~i~~~GG~v~~~l~~~t~hVV~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (264)
T 1z56_C 159 FLFSNRIAYVPRRKI----------STEDDIIEMKIKLFGGKITDQQSLCNLIIIPYTDPILRKDCMNEVHEKIKEQIKA 228 (264)
T ss_dssp C------------------------------CHHHHHHHTTSCCCCSSSCSEEECCCSSTTTHHHHSSHHHHTTTTTTTS
T ss_pred hhhCCeEEEEecCCC----------chhHHHHHHHHHHcCCEEecccCCCEEEEEeCCCccchHHHHHHHHHHHHhhccc
Confidence 899999999998631 123457888999999999999998877777654321 11233444433211000
Q ss_pred hccCCc-cEEecccHHHHHHHhCCccCCCCCCCC
Q 003386 544 LLWNKK-LHVVRSQWLEDCLAKEQKSEEYEYSLK 576 (824)
Q Consensus 544 ~~~~~~-~~IVt~~WLedCi~~g~~l~Ee~Y~v~ 576 (824)
...... ++||+++||++||++|++|||+.|.+.
T Consensus 229 ~~~~~~~~~iV~~~Wv~dci~~~~ll~e~~Y~~~ 262 (264)
T 1z56_C 229 SDTIPKIARVVAPEWVDHSINENCQVPEEDFPVV 262 (264)
T ss_dssp SSSCCCCCEEECTHHHHHHHTTSCCCSSCCC---
T ss_pred ccccCCCCEEecHHHHHHHHHcCCcCCHHHcCCC
Confidence 000123 699999999999999999999999764
No 9
>1a0i_A DNA ligase; DNA replication; HET: DNA ATP; 2.60A {Enterobacteria phage T7} SCOP: b.40.4.6 d.142.2.1
Probab=99.96 E-value=3.6e-30 Score=284.05 Aligned_cols=183 Identities=21% Similarity=0.289 Sum_probs=143.0
Q ss_pred cCccEEEEEccHHH--------------------HHHHHHHhhcCC-CCceEE----ecCCHHHHHHHHHHHHhCCCceE
Q 003386 31 DGICVCVHVYMLSQ--------------------LRSQIMAADQTG-EPCWSL----VAHNVDEVEKFFKETIENRDEGI 85 (824)
Q Consensus 31 ~~~~v~~~~FDll~--------------------lr~~L~~l~~~~-~~~~~~----~~~~~~di~~~~~~ai~~g~EGI 85 (824)
...+++|++||||+ ||++|++++... .+.+++ ..++.+++.++|++++++|+|||
T Consensus 139 ~~~~~~~~vFDll~l~~~~~G~~l~~~~~~pl~eRr~~L~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~EGl 218 (348)
T 1a0i_A 139 HTGHLHIKLYAILPLHIVESGEDCDVMTLLMQEHVKNMLPLLQEYFPEIEWQAAESYEVYDMVELQQLYEQKRAEGHEGL 218 (348)
T ss_dssp CTTTEEEEEEEEEEHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCTTSEEEECCEEEESSHHHHHHHHHHHHTTTCCCE
T ss_pred ccCcEEEEEEeeEeeCCCCCCccchhhccCCHHHHHHHHHHHhhhCCCCeEEEeccEecCCHHHHHHHHHHHHHcCCceE
Confidence 36789999999864 256788877532 233433 45667999999999999999999
Q ss_pred EEeCCCCCCcCCCCCCCeEEEccccccCCCcccEEEEEEEeCCCCC--CCCcceEEEEEecCCCCCCCCccEEEEEEeCC
Q 003386 86 VLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGSGRR--GGEVAQFLVALAERPAPDTYPRRFISFCRVGT 163 (824)
Q Consensus 86 V~K~~dS~Y~pg~Rs~~WiKiK~~y~~~ge~lDlvVIGG~~g~Grr--~g~~~sfllGv~~~~~~~~~~~~~~~~gkVGt 163 (824)
|+|+++|+|.+|+|++ |+|+|++| ++|++|||+++|+|++ +|.+++|+|+ ++ + +.|++ ||
T Consensus 219 v~K~~ds~Y~~Grr~~-wlK~K~~~-----~~D~vViG~~~g~g~r~~~g~~~~~~~~-~~-~------g~~~~----gt 280 (348)
T 1a0i_A 219 IVKDPMCIYKRGKKSG-WWKMKPEN-----EADGIIQGLVWGTKGLANEGKVIGFEVL-LE-S------GRLVN----AT 280 (348)
T ss_dssp EEECTTCEECSEEEEE-EEEESCCE-----EEEEEEEEEECCCTTTSSCSSCCEEEEE-CT-T------SCEEE----EB
T ss_pred EEeCCCCCCCCCCccC-cEEEeecc-----cEEEEEEEEEeCCCCccCCceEEEEEEE-eC-C------CCEEE----cc
Confidence 9999999999998775 99999999 8999999999999986 7889999985 32 2 25664 69
Q ss_pred CCCHHHHHHHHHHhccchhccCCCCCCCCcccccCCCCCCCCcEEEeCCcceEEEEEEecccccccccccCCceeeccEE
Q 003386 164 GLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRI 243 (824)
Q Consensus 164 Gfs~~e~~~L~~~L~~~~~~~~~~~~~pP~~~~~~~~~~~~pdvWi~~P~~svVvEVka~~~~~~s~~~~~g~tLRfPr~ 243 (824)
|||++++++|.+.++++++. ...|| |.. ....++++||+ |..+.|+||+++ .|+.+++||||||
T Consensus 281 Gftd~~~~~l~~~l~~~~~~----~~~~~-~~~---~~~~~~~~wv~-P~~g~v~eV~~~-------~~t~~G~lRfP~f 344 (348)
T 1a0i_A 281 NISRALMDEFTETVKEATLS----QWGFF-SPY---GIGDNDACTIN-PYDGWACQISYM-------EETPDGSLRHPSF 344 (348)
T ss_dssp CCCSHHHHHHHHHHHHHHTT----TSCCC------------CCCCCC-TTTTCEEEEEES-------EECTTSCEESCEE
T ss_pred CCCHHHHHHHHHHHhhhccc----cCCCc-ccc---cCCCCCcEEEc-CCCcEEEEEEee-------eecCCCceECCeE
Confidence 99999999999999998764 11234 321 12467899998 998889999853 4565669999999
Q ss_pred eeEe
Q 003386 244 DRVR 247 (824)
Q Consensus 244 ~~iR 247 (824)
+++|
T Consensus 345 ~~~R 348 (348)
T 1a0i_A 345 VMFR 348 (348)
T ss_dssp EEEC
T ss_pred eEeC
Confidence 9998
No 10
>1fvi_A Chlorella virus DNA ligase-adenylate; adenylated DNA ligase; HET: AMP; 2.00A {Chlorella virus} SCOP: b.40.4.6 d.142.2.1 PDB: 2q2t_A* 2q2u_A* 1p8l_A*
Probab=99.95 E-value=2.4e-28 Score=264.01 Aligned_cols=180 Identities=14% Similarity=0.138 Sum_probs=136.9
Q ss_pred cChHHHhhccccCCCchhhhccCccEEEEEccHH---------HHHHHHHHhhcCCC-C----ceEEe------cCCHHH
Q 003386 10 MTLSVLHDKDNACNISTVAMNDGICVCVHVYMLS---------QLRSQIMAADQTGE-P----CWSLV------AHNVDE 69 (824)
Q Consensus 10 ~~fq~l~~r~~~~~~~~~~~~~~~~v~~~~FDll---------~lr~~L~~l~~~~~-~----~~~~~------~~~~~d 69 (824)
.+||.|++|.+++... ...+++|+||||| +||++|++++.... + .+.++ .++.++
T Consensus 72 ~~F~~l~~~~~~~~~~-----~~~~~~~~vFDll~l~~~~pl~eRr~~L~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 146 (297)
T 1fvi_A 72 ATFQDTTSAVMTGHKM-----YNAKFSYYWFDYVTDDPLKKYIDRVEDMKNYITVHPHILEHAQVKIIPLIPVEINNITE 146 (297)
T ss_dssp SCHHHHHHHHHSCC---------CCEEEEEEEECSSCTTSCHHHHHHHHHHHHHHCGGGGGCSSEEEEECCCEEECSHHH
T ss_pred CCHHHHHHHhccCCCC-----CccceEEEEEeccCCCCCCCHHHHHHHHHHHHhhcCCccccceEEEcCcceEecCCHHH
Confidence 5799999998877541 2569999999987 56899999986432 2 44443 357899
Q ss_pred HHHHHHHHHhCCCceEEEeCCCCCCcCCCCCC----CeEEEccccccCCCcccEEEEEEEeC------------------
Q 003386 70 VEKFFKETIENRDEGIVLKDLGSKWEPGDRSG----KWLKLKPEYIRAGSDLDVLIIGGYYG------------------ 127 (824)
Q Consensus 70 i~~~~~~ai~~g~EGIV~K~~dS~Y~pg~Rs~----~WiKiK~~y~~~ge~lDlvVIGG~~g------------------ 127 (824)
+.++|+.++++|.||||+|+.+|+|.+| |+. +|+|+|+++ ++|++|||+++|
T Consensus 147 ~~~~~~~~~~~g~EGlv~K~~ds~Y~~G-Rs~~~~g~wlK~K~~~-----~~d~vVig~~~g~~~~~~~~~~~~g~~~r~ 220 (297)
T 1fvi_A 147 LLQYERDVLSKGFEGVMIRKPDGKYKFG-RSTLKEGILLKMKQFK-----DAEATIISMTALFKNTNTKTKDNFGYSKRS 220 (297)
T ss_dssp HHHHHHHHHHTTCCSEEEECTTCCCCSS-BCCTTTTSSEEECCCE-----EEEEEEEEEEESCC----------------
T ss_pred HHHHHHHHHHCCCcEEEEECCCCCcCCC-CCCCCCCCeEEECCCC-----CEEEEEEEEEeCcccccccccccccccccc
Confidence 9999999999999999999999999999 988 999999998 899999999999
Q ss_pred ---CCCC-CCCcceEEEEEecCCCCCCCCccEEEEEEeCCCCCHHHHHHHHHHhccchhccCCCCCCCCcccccCCCCCC
Q 003386 128 ---SGRR-GGEVAQFLVALAERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKE 203 (824)
Q Consensus 128 ---~Grr-~g~~~sfllGv~~~~~~~~~~~~~~~~gkVGtGfs~~e~~~L~~~L~~~~~~~~~~~~~pP~~~~~~~~~~~ 203 (824)
+|++ .|.+|+|+||.. + ++|+||+|||++++++|...+ +| +.
T Consensus 221 ~~~~G~~~~g~~g~ll~~~~---g---------~~~~vgtGftd~~~~~l~~~~-------------~p-~~-------- 266 (297)
T 1fvi_A 221 THKSGKVEEDVMGSIEVDYD---G---------VVFSIGTGFDADQRRDFWQNK-------------ES-YI-------- 266 (297)
T ss_dssp ---CCCTTCCCEEEEEECST---T---------CCEEECSSCCHHHHHHHHHTH-------------HH-HT--------
T ss_pred ccCCCcccCCcEEEEEEccC---C---------eEEEECCCCCHHHHHHHHhhc-------------Cc-cc--------
Confidence 9987 789999999853 2 257999999999999987632 22 11
Q ss_pred CCcEEEeCCcceEEEEEEecccccccccccCCceeeccEEeeEecCCCc
Q 003386 204 RPDVWIESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPW 252 (824)
Q Consensus 204 ~pdvWi~~P~~svVvEVka~~~~~~s~~~~~g~tLRfPr~~~iR~DK~~ 252 (824)
..|+||++ ..++..+.||||+|.++|.||+|
T Consensus 267 -----------g~v~ev~~-------~~~t~~g~lRfP~f~r~R~Dk~~ 297 (297)
T 1fvi_A 267 -----------GKMVKFKY-------FEMGSKDCPRFPVFIGIRHEEDR 297 (297)
T ss_dssp -----------TCEEEEEE-------ECC-----CEEEEEEEEC-----
T ss_pred -----------CcEEEEEE-------EEeCCCCCccCCeEEEEEcCCCC
Confidence 02677874 34566678999999999999986
No 11
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=99.87 E-value=5.5e-22 Score=214.34 Aligned_cols=183 Identities=23% Similarity=0.322 Sum_probs=145.4
Q ss_pred CCCccCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhHHhHhcCC-CeeecchHHHHHhcCcc
Q 003386 319 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQKKL 397 (824)
Q Consensus 319 s~lF~Gl~FcV~~~~~~~sk~eLeklI~~~GG~vv~n~~~s~Th~Ia~~~~t~K~~~a~~~~-dIV~p~WV~DCI~~~~l 397 (824)
+.+|+|+.||+++... ..+.+|.++|..+||+++.+++..+||+|+....+.||..|...+ +||+++||.+|+..++.
T Consensus 103 ~~~l~g~~~~~tG~~~-~~r~~l~~~i~~~GG~v~~~~t~~tTHLI~~~~~t~Ky~~A~~~gi~IV~~~Wl~~c~~~~~~ 181 (298)
T 3olc_X 103 NMVMSDVTISCTSLEK-EKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPILLPSWIKTLWEKSQE 181 (298)
T ss_dssp CCTTTTCEEEEESCCH-HHHHHHHHHHHHTTCEECSSCCTTCCEEEESSSCSHHHHHHHHTTCCEECHHHHHHHHHHHHT
T ss_pred ccccCCeEEEeCCCcH-HhHHHHHHHHHHCCCEEecCcCCCeeEEEEeCCCChHHHHHHHCCCeEeeHHHHHHHHHcCCc
Confidence 4589999999986543 478999999999999999999889999999888899999999888 99999999999999987
Q ss_pred CCCCccccccCChhhHhhhhhhccccCCCccCCCChHHHHHHHhccCCCCCcchhHHHhhhcCCCCCCCCCCCeEEEEcc
Q 003386 398 LQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYH 477 (824)
Q Consensus 398 Lp~eP~~ll~~S~~t~~~~~~~~D~yGDSy~~dit~~~L~~ll~~~~~se~~~~i~~l~~~~~~~~~~~lF~gc~~YL~g 477 (824)
+++.++.-+. + ...+..+|.||+|+|.|
T Consensus 182 ~~~~~~~~~~------------~----------------------------------------~~~~~~~f~g~~i~~tG 209 (298)
T 3olc_X 182 KKITRYTDIN------------M----------------------------------------EDFKCPIFLGCIICVTG 209 (298)
T ss_dssp TCCSSGGGSC------------G----------------------------------------GGGBCCTTTTCEEEECS
T ss_pred CCcccccccc------------c----------------------------------------ccccccccCCeEEEEeC
Confidence 7654310000 0 00124589999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC--CceEEEEecCCCcccchhhhHHHHHHHhhhhccCCccEEecc
Q 003386 478 STEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA--NATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRS 555 (824)
Q Consensus 478 ~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~ls--~vTHVVV~~~~~~~~~~~~Lr~~l~~~~~~~~~~~~~~IVt~ 555 (824)
+.+ ..+..++.+|..+||+++..++ .|||||+....+.+ +. . + ....++||++
T Consensus 210 ~~~-----------~~r~~l~~li~~~GG~~~~~ls~~~~THLI~~~~~g~K--~~---~----A-----~~~gi~IV~~ 264 (298)
T 3olc_X 210 LCG-----------LDRKEVQQLTVKHGGQYMGQLKMNECTHLIVQEPKGQK--YE---C----A-----KRWNVHCVTT 264 (298)
T ss_dssp CCH-----------HHHHHHHHHHHHTTCEECSSCCTTTCCEEECSSSCSHH--HH---H----H-----HHTTCEEECH
T ss_pred CCC-----------ccHHHHHHHHHHcCCEEeceecCCCceEEEEeCCCchH--HH---H----H-----HHCCCeEEeH
Confidence 741 2356889999999999999998 59999998765322 11 1 1 1235899999
Q ss_pred cHHHHHHHhCCccCCCCCCCCCCC
Q 003386 556 QWLEDCLAKEQKSEEYEYSLKPTG 579 (824)
Q Consensus 556 ~WLedCi~~g~~l~Ee~Y~v~~~~ 579 (824)
+||.+|++.++++||+.|.+....
T Consensus 265 ~Wl~dsi~~g~~lde~~Y~l~~~~ 288 (298)
T 3olc_X 265 QWFFDSIEKGFCQDESIYKTEPRP 288 (298)
T ss_dssp HHHHHHHHHTSCCCGGGSBSCC--
T ss_pred HHHHHHHHCCCCCCchhcCCCCCc
Confidence 999999999999999999987654
No 12
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=99.82 E-value=4.5e-20 Score=195.63 Aligned_cols=196 Identities=15% Similarity=0.186 Sum_probs=136.9
Q ss_pred ccCCCCCccCeEEEEEcCCC----------------------------CCCHHHHHHHHHHcCCEEEecCCCC------c
Q 003386 315 IKGETSIFSDMVFYFVNVPP----------------------------AYSLDSLHKMVVENGGTFSMNLNNS------V 360 (824)
Q Consensus 315 ~~~~s~lF~Gl~FcV~~~~~----------------------------~~sk~eLeklI~~~GG~vv~n~~~s------~ 360 (824)
+...+.||.|+.|||++... ...+.+|+++|++|||+++++.+.. +
T Consensus 9 ~p~~~~iF~g~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~~~~~~~~~~~ 88 (259)
T 1kzy_C 9 LPLNKTLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQCNTAYQ 88 (259)
T ss_dssp CCSSTTTTTTEEEEECCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSCCTTTTTTTCE
T ss_pred CCCCCcCcCCcEEEEEcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCccccccccCCC
Confidence 44578899999999976532 1477899999999999999887643 6
Q ss_pred eEEEEec-CCChhHHhHhcCC-CeeecchHHHHHhcCccCCCCccccccCChhhHhhhhhhccccCCCccCCCChHHHHH
Q 003386 361 THCVAAD-NKGLKYEAAKRRG-DVIHYSWVLDCCSQKKLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQ 438 (824)
Q Consensus 361 Th~Ia~~-~~t~K~~~a~~~~-dIV~p~WV~DCI~~~~lLp~eP~~ll~~S~~t~~~~~~~~D~yGDSy~~dit~~~L~~ 438 (824)
||||+.. ..+.||..+...+ +||+++||.||+++++++|+.+| ++....... .
T Consensus 89 t~LIa~~~~rt~K~l~ala~g~~iVs~~Wl~dc~~~~~~l~~~~Y-~l~~g~s~~----------~-------------- 143 (259)
T 1kzy_C 89 CLLIADQHCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRNY-LLPAGYSLE----------E-------------- 143 (259)
T ss_dssp EEEEESSCCCSHHHHHHHHHTCCEEETHHHHHHHHHTSCCCGGGS-BCCCEEETT----------T--------------
T ss_pred eEEEcCCCCCcHHHHHHHhcCCCCccHHHHHHHHHcCCcCCHHHc-cCCCCcccc----------c--------------
Confidence 8998643 4688988886667 99999999999999999999886 443211000 0
Q ss_pred HHhccCCCCCcchhHHHhhhcCCCCCCCCCCCeEEEEccCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC-----
Q 003386 439 LLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA----- 513 (824)
Q Consensus 439 ll~~~~~se~~~~i~~l~~~~~~~~~~~lF~gc~~YL~g~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~ls----- 513 (824)
.++ ........||+|++|||.+... .. ....+..+++++||+++..+.
T Consensus 144 --~~~---------------~~~~~~~~LF~G~~I~i~~~~~---~~-------~~~~~~~Il~~~Ga~vv~~~~s~~~~ 196 (259)
T 1kzy_C 144 --QRI---------------LDWQPRENPFQNLKVLLVSDQQ---QN-------FLELWSEILMTGGAASVKQHHSSAHN 196 (259)
T ss_dssp --TEE---------------ECCCCCCCTTTTCEEEEEESCT---TT-------THHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred --chh---------------hhccccCCCCCCeEEEEecCCC---CC-------HHHHHHHHHHhcCCEEEeccccchhh
Confidence 000 0011235699999999987531 11 134678899999999886652
Q ss_pred -----CceEEEEecCCCcccchhhhHHHHHHHhhhhccCCccEEecccHHHHHHHhCCccCCCCCC
Q 003386 514 -----NATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYS 574 (824)
Q Consensus 514 -----~vTHVVV~~~~~~~~~~~~Lr~~l~~~~~~~~~~~~~~IVt~~WLedCi~~g~~l~Ee~Y~ 574 (824)
..+||||.+.. .. + ...+ . + ....++||+.+||.+||..+++++++.|.
T Consensus 197 ~d~~~~~~~viv~d~~-~~-~--~~~~-~--a-----~~~~i~iVs~EWv~~sI~~~~ll~~~~hp 250 (259)
T 1kzy_C 197 KDIALGVFDVVVTDPS-CP-A--SVLK-C--A-----EALQLPVVSQEWVIQCLIVGERIGFKQHP 250 (259)
T ss_dssp CCSCGGGCSEEEECTT-CC-H--HHHH-H--H-----HHHTCCEECHHHHHHHHHHTSCCCTTSSG
T ss_pred hhccCCCCeEEEECCC-Ch-H--HHHH-H--H-----HhcCCCEecHHHHHHHHHhCCcCCCCcCc
Confidence 35677776432 11 1 1111 1 0 12358999999999999999999998874
No 13
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=99.81 E-value=2.1e-19 Score=186.11 Aligned_cols=197 Identities=16% Similarity=0.169 Sum_probs=134.5
Q ss_pred CCccCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCCCCceEEEEec------CCChhHHhHhcCC-CeeecchHHHHH
Q 003386 320 SIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAAD------NKGLKYEAAKRRG-DVIHYSWVLDCC 392 (824)
Q Consensus 320 ~lF~Gl~FcV~~~~~~~sk~eLeklI~~~GG~vv~n~~~s~Th~Ia~~------~~t~K~~~a~~~~-dIV~p~WV~DCI 392 (824)
..+.++.||+++.. ...+..|.+++..+||+++.+.+..+||+|+.. ..+.||..++..+ .||+++||.||+
T Consensus 3 ~~~~~~~i~~sg~~-~~~~~~l~~~~~~~G~~~~~~~~~~~THlI~~~~~~~~~~rt~K~~~a~~~g~~IV~~~Wl~~~~ 81 (229)
T 1l0b_A 3 RAERDISMVVSGLT-PKEVMIVQKFAEKYRLALTDVITEETTHVIIKTDAEFVCERTLKYFLGIAGGKWIVSYSWVIKSI 81 (229)
T ss_dssp CCCCCCEEEEESCC-HHHHHHHHHHHHHTTCEECSSCCSSCCEEEECBCTTSEECCCHHHHHHHHTTCEEEETHHHHHHH
T ss_pred CCCCCeEEEEcCCC-HHHHHHHHHHHHHcCCEEeCCcCCCCCEEEEcCCccccccccHHHHHHHHCCCcEecHHHHHHHH
Confidence 45788999997644 345788999999999999988888899999875 4689999888888 999999999999
Q ss_pred hcCccCCCCccccccCChhhHhhhhhhccccCCCccCCCChHHHHHHHhccCCCCCcchhHHHhhhcCCCCCCCCCCCeE
Q 003386 393 SQKKLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCC 472 (824)
Q Consensus 393 ~~~~lLp~eP~~ll~~S~~t~~~~~~~~D~yGDSy~~dit~~~L~~ll~~~~~se~~~~i~~l~~~~~~~~~~~lF~gc~ 472 (824)
++++++|.+||.+.... +......... .. + . .+..+|.||.
T Consensus 82 ~~~~~~~e~~y~~~~~~-----------------~~~~~~~~~~---------------~~--r-~----~~~~lF~g~~ 122 (229)
T 1l0b_A 82 QERKLLSVHEFEVKGDV-----------------VTGSNHQGPR---------------RS--R-E----SQEKLFEGLQ 122 (229)
T ss_dssp TTTSCCCSGGGBCCEET-----------------TTCSSSCHHH---------------HH--H-H----HC--CCTTCE
T ss_pred HCCCcCChHHeEecccc-----------------ccccccccch---------------hh--h-h----hhhhhhcCce
Confidence 99999999886543211 1100000000 00 0 0 1236899999
Q ss_pred EEEccCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCCC------ceEEEEecCCC--cccchhhhHHHHHHHhhhh
Q 003386 473 IYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLAN------ATHVVVLSVLG--YDVNFNSLTESFTAREKHL 544 (824)
Q Consensus 473 ~YL~g~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~ls~------vTHVVV~~~~~--~~~~~~~Lr~~l~~~~~~~ 544 (824)
|||++.. .... ...|..+|+.+||+++..+.. ++|+||..+.. ....++.+
T Consensus 123 ~~~~~~~--~~~~--------~~~l~~li~~~GG~v~~~~~~~~~~~~~~~~vvv~~~~~~~~~~~~~l----------- 181 (229)
T 1l0b_A 123 IYCCEPF--TNMP--------KDELERMLQLCGASVVKELPLLTRDTGAHPIVLVQPSAWTEDNDCPDI----------- 181 (229)
T ss_dssp EEECSCC--SSSC--------HHHHHHHHHHTTCEEECSSSCGGGCCSSCCEEEEC------------------------
T ss_pred EEEEecC--CCCC--------HHHHHHHHHHCCCEEeCCcccccccCCCceEEEEcCCccchhhhHHHH-----------
Confidence 9998742 1112 346789999999999998864 57765544321 01111111
Q ss_pred ccCCccEEecccHHHHHHHhCCccCCCCCCCCC
Q 003386 545 LWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKP 577 (824)
Q Consensus 545 ~~~~~~~IVt~~WLedCi~~g~~l~Ee~Y~v~~ 577 (824)
.....++||+++||.+||..+++++++.|.+..
T Consensus 182 ~~~~~i~iVs~~WlldsI~~~~~~~~~~Y~l~~ 214 (229)
T 1l0b_A 182 GQLCKGRLVMWDWVLDSISVYRCRDLDAYLVQN 214 (229)
T ss_dssp ------CEEETHHHHHHHHTTSCCCGGGGBCC-
T ss_pred HHHcCCeEeehhHHHHHHhcCCcCCccceEccc
Confidence 113468999999999999999999999997774
No 14
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=99.78 E-value=2.3e-18 Score=175.98 Aligned_cols=197 Identities=19% Similarity=0.221 Sum_probs=135.3
Q ss_pred cCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCCCCceEEEEec------CCChhHHhHhcCC-CeeecchHHHHHhcC
Q 003386 323 SDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAAD------NKGLKYEAAKRRG-DVIHYSWVLDCCSQK 395 (824)
Q Consensus 323 ~Gl~FcV~~~~~~~sk~eLeklI~~~GG~vv~n~~~s~Th~Ia~~------~~t~K~~~a~~~~-dIV~p~WV~DCI~~~ 395 (824)
.|+.||+++.. ...++.|.++|..+||+++.+.+..+||+|+.. ..+.||..++..+ .||+++||.||++++
T Consensus 3 ~~~~~~~sg~~-~~~~~~l~~~~~~~G~~~~~~~~~~~THli~~~~~~~~~~rt~k~~~a~~~g~~IV~~~Wl~~~~~~~ 81 (214)
T 1t15_A 3 KRMSMVVSGLT-PEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKER 81 (214)
T ss_dssp -CCEEEEESCC-HHHHHHHHHHHHHHTCEECSSCCTTCCEEEECBCTTSEECCBHHHHHHHHTTCEEEETHHHHHHHHTT
T ss_pred CcEEEEECCCC-HHHHHHHHHHHHHhCCEEeCccCCCCcEEEEeCCcccchhhhHHHHHHHhcCCEEeCHHHHHHHHHCC
Confidence 36778877543 456788999999999999998888899999865 4589998888777 999999999999999
Q ss_pred ccCCCCccccccCChhhHhhhhhhccccCCCccCCCChHHHHHHHhccCCCCCcchhHHHhhhcCCCCCCCCCCCeEEEE
Q 003386 396 KLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYF 475 (824)
Q Consensus 396 ~lLp~eP~~ll~~S~~t~~~~~~~~D~yGDSy~~dit~~~L~~ll~~~~~se~~~~i~~l~~~~~~~~~~~lF~gc~~YL 475 (824)
+++|.+||.+.. |.+... ....... -+ . .....+|.||.|||
T Consensus 82 ~~~~e~~y~~~~-----------------~~~~~~-~~~~~~~----------------~r--~--~~~~~lF~g~~~~~ 123 (214)
T 1t15_A 82 KMLNEHDFEVRG-----------------DVVNGR-NHQGPKR----------------AR--E--SQDRKIFRGLEICC 123 (214)
T ss_dssp SCCCGGGGBCCE-----------------ETTTBT-TCCHHHH----------------HH--T--CTTSCTTTTCEEEE
T ss_pred CcCChHHeEeec-----------------cccccc-cccchhh----------------Hh--h--cCCCcccCCCEEEE
Confidence 999988864431 111000 0000000 00 0 01346899999999
Q ss_pred ccCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCCC-----ceE-EEEecCCCcccchhhhHHHHHHHhhhhccCCc
Q 003386 476 YHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLAN-----ATH-VVVLSVLGYDVNFNSLTESFTAREKHLLWNKK 549 (824)
Q Consensus 476 ~g~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~ls~-----vTH-VVV~~~~~~~~~~~~Lr~~l~~~~~~~~~~~~ 549 (824)
.+.. .... ...|..+|+.+||+++..+.. .+| ||+.++.... +-..++ .......
T Consensus 124 ~~~~--~~~~--------~~~l~~li~~~GG~v~~~~~~~~~~~~~~~ivi~~~~~~~-~~~~~~--------~~a~~~~ 184 (214)
T 1t15_A 124 YGPF--TNMP--------TDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWT-EDNGFH--------AIGQMCE 184 (214)
T ss_dssp CSCC--SSSC--------HHHHHHHHHHTTCEECCSGGGCCCSTTCCEEEEECGGGCS-SCGGGG--------SSTTTCS
T ss_pred EecC--CCCC--------HHHHHHHHHHCCCEEecCccccccCCCCccEEEECCCccc-chhhHH--------HHHHhcC
Confidence 8732 1111 346789999999999998763 224 5555432110 000000 0012356
Q ss_pred cEEecccHHHHHHHhCCccCCCCCCCCC
Q 003386 550 LHVVRSQWLEDCLAKEQKSEEYEYSLKP 577 (824)
Q Consensus 550 ~~IVt~~WLedCi~~g~~l~Ee~Y~v~~ 577 (824)
++||+++||.+||..++++|++.|.+..
T Consensus 185 ~~iV~~~Wi~dsi~~~~~l~~~~Y~l~~ 212 (214)
T 1t15_A 185 APVVTREWVLDSVALYQCQELDTYLIPQ 212 (214)
T ss_dssp SCEEEHHHHHHHHHHTSCCCSGGGBCCC
T ss_pred CcEEeccHHHHhHhhcCcCCCcceeecc
Confidence 8999999999999999999999998764
No 15
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=99.77 E-value=2.3e-18 Score=180.65 Aligned_cols=204 Identities=18% Similarity=0.217 Sum_probs=132.2
Q ss_pred CCccCeEEEEEcC--CCCCCHHHHHHHHHHcCCEEEec--------CC-C-----------------CceEEEEecC-CC
Q 003386 320 SIFSDMVFYFVNV--PPAYSLDSLHKMVVENGGTFSMN--------LN-N-----------------SVTHCVAADN-KG 370 (824)
Q Consensus 320 ~lF~Gl~FcV~~~--~~~~sk~eLeklI~~~GG~vv~n--------~~-~-----------------s~Th~Ia~~~-~t 370 (824)
++|+||.|||++. .....+.+|+++|.+|||+++.+ +. . ..||+|+... .+
T Consensus 1 ~lF~g~~F~ls~~~~~~~~~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia~~~~rt 80 (241)
T 2vxb_A 1 LIFDDCVFAFSGPVHEDAYDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDTFSRK 80 (241)
T ss_dssp CTTTTEEEEECCCSSTTSSCHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEECSSCCCC
T ss_pred CCCCCcEEEEecCCCCchhhHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEEEcCCCCCc
Confidence 4899999999877 45678999999999999999886 11 0 1377775432 47
Q ss_pred hhHHhHhcCC-CeeecchHHHHHhcCccCCCCccccccCChhhHhhhhhhccccCCCccCCCChHHHHHHHhccCCCCCc
Q 003386 371 LKYEAAKRRG-DVIHYSWVLDCCSQKKLLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDP 449 (824)
Q Consensus 371 ~K~~~a~~~~-dIV~p~WV~DCI~~~~lLp~eP~~ll~~S~~t~~~~~~~~D~yGDSy~~dit~~~L~~ll~~~~~se~~ 449 (824)
.||..+...+ |||+|+||.||+++++++|++| |++......... ...-++-..|....
T Consensus 81 ~K~~~ala~gipiV~~~Wi~dc~~~~~~~~~~~-ylL~~~~s~~~~--~~~~~~~~~~~~~~------------------ 139 (241)
T 2vxb_A 81 VKYLEALAFNIPCVHPQFIKQCLKMNRVVDFSP-YLLASGYSHRLD--CTLSQRIEPFDTTD------------------ 139 (241)
T ss_dssp HHHHHHHHHTCCEECTHHHHHHHHHTSCCCSGG-GBBEEEEETTTT--EEEECCCCCCCTTS------------------
T ss_pred HHHHHHHHcCCCEecHHHHHHHHHcCCcCChhh-ccCCCCcchhcc--chhhccccCCChhh------------------
Confidence 8888887777 9999999999999999999998 566544321110 00000000111100
Q ss_pred chhHHHhhhcCCCCCCCCCCCeEEEEccCCCCCCC---chHHHHHHHHHHHHHHHHhcCCEE--EccCC-CceEEEEecC
Q 003386 450 KTIDYYKKKYCPQDKWSCFHGCCIYFYHSTEPLSP---DWEVLLGLALRRLKLEISFHGGKV--CNNLA-NATHVVVLSV 523 (824)
Q Consensus 450 ~~i~~l~~~~~~~~~~~lF~gc~~YL~g~~~~~~~---d~~~i~~~~l~~L~~~I~~~GG~V--~~~ls-~vTHVVV~~~ 523 (824)
..++.+. .+..||+|++|||......... +.+ -.+-.++.+..+++++||++ +..++ ..+|+|+...
T Consensus 140 ~l~~~~~------~~~~Lf~g~~i~~~~~~~~~~~~~~~~~-~~g~~~~~~~~i~~~~Ga~~~~v~~~~~~~~d~v~~~~ 212 (241)
T 2vxb_A 140 SLYDRLL------ARKGPLFGKKILFIIPEAKSWQKKIENT-EQGQKALAHVYHALALGADVEIRPNVAHLECDLILTMD 212 (241)
T ss_dssp CHHHHHH------HCCCTTTTCEEEECCCC-------------CHHHHHHHHHHHHHTTCEEECCSCCSSCCCSEEECSS
T ss_pred HHHHHHh------hcCcCCCCcEEEEEeCCCcccccccccc-cccchHHHHHHHHHHcCCceecccccccCCccEEEECC
Confidence 0111111 2356999999999753211000 000 00112467889999999999 54554 3678888643
Q ss_pred CCcccchhhhHHHHHHHhhhhccCCccEEecccHHHHHHHhCCccC
Q 003386 524 LGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSE 569 (824)
Q Consensus 524 ~~~~~~~~~Lr~~l~~~~~~~~~~~~~~IVt~~WLedCi~~g~~l~ 569 (824)
. . . .....++||+++||.+|+..|++++
T Consensus 213 ~--~--~--------------~~~~~~~iV~~eWv~~~i~~g~~l~ 240 (241)
T 2vxb_A 213 G--N--I--------------VDETNCPVVDPEWIVECLISQSDIS 240 (241)
T ss_dssp S--C--C--------------CSSCSSCEECHHHHHHHHHHTSCTT
T ss_pred c--c--c--------------cccCCCCEecHHHHHHHHHhceecC
Confidence 2 1 0 1246799999999999999999987
No 16
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=99.77 E-value=2.4e-18 Score=175.44 Aligned_cols=181 Identities=16% Similarity=0.224 Sum_probs=129.6
Q ss_pred EEEEcCCCCCCHHHHHHHHHHcCC-EEEecCCCCceEEEEec-CCChhHHhHhcCC-CeeecchHHHHHhcCccCCCCcc
Q 003386 327 FYFVNVPPAYSLDSLHKMVVENGG-TFSMNLNNSVTHCVAAD-NKGLKYEAAKRRG-DVIHYSWVLDCCSQKKLLQLQPK 403 (824)
Q Consensus 327 FcV~~~~~~~sk~eLeklI~~~GG-~vv~n~~~s~Th~Ia~~-~~t~K~~~a~~~~-dIV~p~WV~DCI~~~~lLp~eP~ 403 (824)
|+.+ +.....+++|.++|..+|| .+..+.+..+||+|+.. ..|.||..++..+ .||+++||.+|++.|+++|.++|
T Consensus 14 ~~~s-gl~~~~~~~l~~~i~~lgG~~~~~~~~~~~THlv~~~~~rT~K~l~ai~~g~~Iv~~~Wv~~~~~~g~~l~e~~y 92 (199)
T 3u3z_A 14 LVMT-SMPSEKQNVVIQVVDKLKGFSIAPDVCETTTHVLSGKPLRTLNVLLGIARGCWVLSYDWVLWSLELGHWISEEPF 92 (199)
T ss_dssp EEEE-SCCHHHHHHHHHHHHHHCSCEEESSCCTTEEEEEESSCCCBHHHHHHHHTTCEEEETHHHHHHHHHTSCCCSGGG
T ss_pred EEEc-CCCHHHHHHHHHHHHHcCCcEEecCCCCCCeEEEECCCCCCHHHHHHHHCCCcEEeHHHHHHHhhCCCCCChhhc
Confidence 4444 4445677899999999998 56678888899999866 4689999988888 99999999999999999999887
Q ss_pred ccccCChhhHhhhhhhccccCCCccCCCChHHHHHHHhccCCCCCcchhHHHhhhcCCCCCCCCCCCeE-EEEccCCCCC
Q 003386 404 YYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCC-IYFYHSTEPL 482 (824)
Q Consensus 404 ~ll~~S~~t~~~~~~~~D~yGDSy~~dit~~~L~~ll~~~~~se~~~~i~~l~~~~~~~~~~~lF~gc~-~YL~g~~~~~ 482 (824)
.+-....... ...+...+ ........||.||. ||+.++..
T Consensus 93 ~~~~~~~~~~-------------------~~rl~r~~------------------~~~~~~~~LF~g~~~~~v~~~~~-- 133 (199)
T 3u3z_A 93 ELSHHFPAAP-------------------LCRSECHL------------------SAGPYRGTLFADQPVMFVSPASS-- 133 (199)
T ss_dssp BCTTTCTHHH-------------------HHHHHHHH------------------CSSSCCCCTTTTSCCEEECTTCS--
T ss_pred cccCCccccc-------------------cchhhhhh------------------hcccccchhhCCCeEEEECCCCC--
Confidence 4422111100 00111000 00112347999995 66666432
Q ss_pred CCchHHHHHHHHHHHHHHHHhcCCEEEccCCCceEEEEecCCCcccchhhhHHHHHHHhhhhccCCccEEecccHHHHHH
Q 003386 483 SPDWEVLLGLALRRLKLEISFHGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCL 562 (824)
Q Consensus 483 ~~d~~~i~~~~l~~L~~~I~~~GG~V~~~ls~vTHVVV~~~~~~~~~~~~Lr~~l~~~~~~~~~~~~~~IVt~~WLedCi 562 (824)
.. .+.|+.+|+.+||+|+.++..++++|.+... + ......+|+++||.|||
T Consensus 134 -~~--------~~~L~~lI~~~GG~v~~~~~~~~iiI~~~~~------~--------------~~~~~~~V~p~Wi~DsI 184 (199)
T 3u3z_A 134 -PP--------VAKLCELVHLCGGRVSQVPRQASIVIGPYSG------K--------------KKATVKYLSEKWVLDSI 184 (199)
T ss_dssp -SC--------HHHHHHHHHHTTCCBCSSGGGCSEEESCCCS------C--------------CCTTCEEECHHHHHHHH
T ss_pred -CC--------HHHHHHHHHHcCCEEeccCCCCEEEEeCCch------h--------------ccCCCcEEChhHHHHHH
Confidence 12 3578999999999999999877766643211 0 12456899999999999
Q ss_pred HhCCccCCCCCCCC
Q 003386 563 AKEQKSEEYEYSLK 576 (824)
Q Consensus 563 ~~g~~l~Ee~Y~v~ 576 (824)
.+++++|.++|.++
T Consensus 185 ~~~~llp~~~Y~~~ 198 (199)
T 3u3z_A 185 TQHKVCAPENYLLS 198 (199)
T ss_dssp HHTSCCCGGGGBCC
T ss_pred HcCCcCChHhccCC
Confidence 99999999999876
No 17
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=99.75 E-value=8.9e-18 Score=172.03 Aligned_cols=180 Identities=17% Similarity=0.220 Sum_probs=129.5
Q ss_pred CeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCCCCceEEEEec---CCChhHHhHhcCC-CeeecchHHHHHhcCccCC
Q 003386 324 DMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAAD---NKGLKYEAAKRRG-DVIHYSWVLDCCSQKKLLQ 399 (824)
Q Consensus 324 Gl~FcV~~~~~~~sk~eLeklI~~~GG~vv~n~~~s~Th~Ia~~---~~t~K~~~a~~~~-dIV~p~WV~DCI~~~~lLp 399 (824)
|+.||+++. ....+..|.+++..+||+++.+++..+||+|+.. ..+.||..++..+ .||+++||.+|+++++++|
T Consensus 2 ~~vi~~sg~-~~~~~~~l~~~~~~~G~~~~~~~~~~~THlV~~~~~~~rt~K~l~a~~~g~~IV~~~Wl~~c~~~~~~~~ 80 (210)
T 2nte_A 2 PLVLIGSGL-SSEQQKMLSELAVILKAKKYTEFDSTVTHVVVPGDAVQSTLKCMLGILNGCWILKFEWVKACLRRKVCEQ 80 (210)
T ss_dssp CCEEEESSC-CHHHHHHHHHHHHHTTCEEESSCCTTCCEEEESSSSCCCSHHHHHHHHTTCEEEETHHHHHHHHHTSCCC
T ss_pred CEEEEECCC-CHHHHHHHHHHHHHcCCEEeCCCCCCCeEEEEcCCCcchHHHHHHHHhcCCEEecHHHHHHHHHcCCcCC
Confidence 567777654 3456788999999999999999888899999976 5789988887777 9999999999999999999
Q ss_pred CCccccccCChhhHhhhhhhccccCCCccCCCChHHHHHHHhccCCCCCcchhHHHhhhcCCCCCCCCCCCeEEEEccCC
Q 003386 400 LQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHST 479 (824)
Q Consensus 400 ~eP~~ll~~S~~t~~~~~~~~D~yGDSy~~dit~~~L~~ll~~~~~se~~~~i~~l~~~~~~~~~~~lF~gc~~YL~g~~ 479 (824)
.++|.+- ..+ .+. -++ +.+ ....+|.||.|||.+..
T Consensus 81 e~~y~~~-~~~-~~~------------------------r~~--------------~~~----~~~~lF~g~~~~l~~~~ 116 (210)
T 2nte_A 81 EEKYEIP-EGP-RRS------------------------RLN--------------REQ----LLPKLFDGCYFYLWGTF 116 (210)
T ss_dssp GGGTBCT-THH-HHH------------------------HHH--------------HHT----TCCCTTTTCEEEECSCC
T ss_pred hhhccCC-CCC-hhh------------------------hhc--------------ccc----ccccccCceEEEEeccC
Confidence 8876432 110 000 000 000 12458999999998731
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHhcCCEEEccC------------------------CCceEEEEecCCCcccchhhhHH
Q 003386 480 EPLSPDWEVLLGLALRRLKLEISFHGGKVCNNL------------------------ANATHVVVLSVLGYDVNFNSLTE 535 (824)
Q Consensus 480 ~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~l------------------------s~vTHVVV~~~~~~~~~~~~Lr~ 535 (824)
.... ...|+.+|+.+||+++... ..|||.||..+. ......
T Consensus 117 --~~~~--------~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~~t~~iv~~~~-~~~~~~---- 181 (210)
T 2nte_A 117 --KHHP--------KDNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHARPDSDQRFCTQYIIYEDL-CNYHPE---- 181 (210)
T ss_dssp --SSSC--------HHHHHHHHHHTTCEEESSCCCGGGCGGGSSCCCCTTSCTTCGGGTCCEEEEECSC-SSCCCS----
T ss_pred --CCCC--------HHHHHHHHHHCCCEEEecCCCCccccccccceeeeccCCCcccccceEEEEeccc-cccCHH----
Confidence 1122 4578899999999998621 137899987653 111000
Q ss_pred HHHHHhhhhccCCccEEecccHHHHHHHhCCccCCC
Q 003386 536 SFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEY 571 (824)
Q Consensus 536 ~l~~~~~~~~~~~~~~IVt~~WLedCi~~g~~l~Ee 571 (824)
.....++++|+++||.+||..++++|.+
T Consensus 182 --------~~~~~~v~~V~~~Wl~dcI~~~~llp~~ 209 (210)
T 2nte_A 182 --------RVRQGKVWKAPSSWFIDCVMSFELLPLD 209 (210)
T ss_dssp --------CSEETTEEEEEHHHHHHHHHHTSCCCSC
T ss_pred --------HHhccCcccccHHHHHHHHHhCeeccCC
Confidence 0013567899999999999999999875
No 18
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=99.72 E-value=3.3e-17 Score=168.10 Aligned_cols=194 Identities=18% Similarity=0.279 Sum_probs=133.5
Q ss_pred CCccCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCCCCceEEEEec-CCChhHHhHhcCC-CeeecchHHHHHhcCcc
Q 003386 320 SIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAAD-NKGLKYEAAKRRG-DVIHYSWVLDCCSQKKL 397 (824)
Q Consensus 320 ~lF~Gl~FcV~~~~~~~sk~eLeklI~~~GG~vv~n~~~s~Th~Ia~~-~~t~K~~~a~~~~-dIV~p~WV~DCI~~~~l 397 (824)
....++.||+++... .+++++|..+||.++.+++. +||+|+.. ..|.||..++..+ +||+++||.+|++++++
T Consensus 8 ~~~~~~~v~~sG~~~----~~~~~~i~~lGg~~~~~~~~-~THlI~~~~~rt~K~l~a~~~g~~IV~~~Wl~~~~~~~~~ 82 (209)
T 2etx_A 8 QESTAPKVLFTGVVD----ARGERAVLALGGSLAGSAAE-ASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSRKAGFF 82 (209)
T ss_dssp ----CCEEEECSSCC----HHHHHHHHHTTCEECSSTTT-CSEEECSSCCCSHHHHHHHHHTCCEECTHHHHHHHHHTSC
T ss_pred ccCCCcEEEEeCCCc----HHHHHHHHHCCCEEeCCCCC-ceEEEECCCCCCHHHHHHHhcCCccccHHHHHHHHHcCCC
Confidence 345677788754432 46799999999999998874 99999754 3689998888887 99999999999999999
Q ss_pred CCCCccccccCChhhHhhhhhhccccCCCccCCCChHHHHHHHhccCCCCCcchhHHHhhhcCCCCCCCCCCCeEEEEcc
Q 003386 398 LQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYH 477 (824)
Q Consensus 398 Lp~eP~~ll~~S~~t~~~~~~~~D~yGDSy~~dit~~~L~~ll~~~~~se~~~~i~~l~~~~~~~~~~~lF~gc~~YL~g 477 (824)
+|.++| ++. .+.... .||- + +...+.+ .+ ...+|.|+.|||.+
T Consensus 83 l~e~~y-~~~-~~~~~~-------~~~~------~---l~~~~~~------------a~-------~~~lF~g~~~~~~~ 125 (209)
T 2etx_A 83 LPPDEY-VVT-DPEQEK-------NFGF------S---LQDALSR------------AR-------ERRLLEGYEIYVTP 125 (209)
T ss_dssp CCSGGG-BCC-CHHHHH-------HTTC------C---HHHHHHH------------HH-------HSCTTTTCEEEECT
T ss_pred CChhhc-ccc-Chhhhh-------hcCC------C---HHHHHhh------------hh-------hCCCcCCcEEEEeC
Confidence 999885 442 222111 1121 1 2211111 01 12589999999987
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCCC---ceEEEEecCCCcccchhhhHHHHHHHhhhhccCCccEEec
Q 003386 478 STEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLAN---ATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVR 554 (824)
Q Consensus 478 ~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~ls~---vTHVVV~~~~~~~~~~~~Lr~~l~~~~~~~~~~~~~~IVt 554 (824)
+.. .. ...|+.+|+.+||++...+.. -+|||+.... +...++... ...++||+
T Consensus 126 ~~~---~~--------~~~l~~li~~~GG~v~~~~~~~~~~~~ivI~~~~----d~~~~~~~~---------~~~i~vvs 181 (209)
T 2etx_A 126 GVQ---PP--------PPQMGEIISCCGGTYLPSMPRSYKPQRVVITCPQ----DFPHCSIPL---------RVGLPLLS 181 (209)
T ss_dssp TCS---SC--------HHHHHHHHHHTTCEECSSCCCSCCTTEEEECCGG----GGGGCHHHH---------HHTCCEEC
T ss_pred CCC---CC--------HHHHHHHHHHCCCEEECCCCCCCCCceEEEECcc----cHHHHHHHH---------HCCCeEEc
Confidence 531 12 246789999999999988774 3788886432 222222111 23478999
Q ss_pred ccHHHHHHHhCCccCCCCCCCCCCCC
Q 003386 555 SQWLEDCLAKEQKSEEYEYSLKPTGM 580 (824)
Q Consensus 555 ~~WLedCi~~g~~l~Ee~Y~v~~~~~ 580 (824)
.+||.+||..++ ++.+.|.+.+.++
T Consensus 182 ~eWi~~sI~~q~-ld~e~y~l~~~~~ 206 (209)
T 2etx_A 182 PEFLLTGVLKQE-AKPEAFVLSPLEM 206 (209)
T ss_dssp THHHHHHHHHTC-CCGGGGBCCTTC-
T ss_pred HHHHHHHHHhcc-cChHHheecCCCc
Confidence 999999999876 5999999987775
No 19
>1p16_A GTP--RNA, mRNA capping enzyme alpha subunit; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} SCOP: b.40.4.6 d.142.2.3
Probab=99.65 E-value=1.6e-16 Score=178.08 Aligned_cols=179 Identities=11% Similarity=0.121 Sum_probs=126.8
Q ss_pred CccEEEEEccHH-------------HHHHHHHHhh-cC---------------CCC-ceEEecC-CHHHHHHHHHHH--H
Q 003386 32 GICVCVHVYMLS-------------QLRSQIMAAD-QT---------------GEP-CWSLVAH-NVDEVEKFFKET--I 78 (824)
Q Consensus 32 ~~~v~~~~FDll-------------~lr~~L~~l~-~~---------------~~~-~~~~~~~-~~~di~~~~~~a--i 78 (824)
..+++|+||||| +|+++|++++ .+ ..+ .+..... ....++++|+.+ +
T Consensus 136 ~~~~~f~~FDlL~~~G~dl~~~pl~eR~~~L~~~i~~~~~~~~~~~~~~~~~~~~pf~v~~~~~~~~~~~~~~~~~~~~~ 215 (395)
T 1p16_A 136 EPVLRYVIFDALAIHGKCIIDRPLPKRLGYITENVMKPFDNFKKHNPDIVNSPEFPFKVGFKTMLTSYHADDVLSKMDKL 215 (395)
T ss_dssp CCEEEEEEEEEEEETTEECTTSCHHHHHHHHHHHTHHHHHHHHHHCHHHHSCTTSCCEEEECCCEEGGGTHHHHTTGGGC
T ss_pred cceeEEEEEEEEEECCeEcccCCHHHHHHHHHHHhhcccHhhhhcCccccccccCceEEEEecchhHHHHHHHHHHHHhc
Confidence 358899999976 5688888854 21 001 2333222 345667788763 4
Q ss_pred hCCCceEEEeCCCCCCcCCCCCCCeEEEccccccCCCcccEEEEEEEe--------CCCCCCCCc---ce----EEEEEe
Q 003386 79 ENRDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIGGYY--------GSGRRGGEV---AQ----FLVALA 143 (824)
Q Consensus 79 ~~g~EGIV~K~~dS~Y~pg~Rs~~WiKiK~~y~~~ge~lDlvVIGG~~--------g~Grr~g~~---~s----fllGv~ 143 (824)
.+|.||||+|+.+|+|.+| |+.+|+|+||.+. .++|++|+++|+ |+|++ +.+ ++ |.+.++
T Consensus 216 ~~g~EGlI~K~~ds~Y~~G-r~~~wlKwK~~~~---~TvDfvl~~~~~~~~~~~~~g~G~~-~~~~dy~~~p~~~~l~v~ 290 (395)
T 1p16_A 216 FHASDGLIYTCAETPYVFG-TDQTLLKWKPAEE---NTVDFQLEFVFNEVQDPDLDERDPT-STYLDYDAKPNLIKLRVW 290 (395)
T ss_dssp SSCEEEEEEEESSSCCCSE-EEEEEEEECCGGG---CCEEEEEEEECEEEECTTSCTTSTT-CEEEECSSCCSEEEEEEE
T ss_pred CCCCCeEEEEeCCCCcCCC-CccceEEEecCCC---eEEEEEEEEEecccccccccccCcc-ccccccccccceeEEEEE
Confidence 5899999999999999999 5579999999774 489998888775 56765 444 33 778888
Q ss_pred cCCCCCCCCccEEEEEEeCCCCCHHHHHHHHHHhccchhccCCCCCCCCcccccCCCCCCCCcEEEeCCcceEEEEEEec
Q 003386 144 ERPAPDTYPRRFISFCRVGTGLSDEELDAVVTKLKPYFRKYEYPKRAPPSFYQVTNNSKERPDVWIESPEKSIILSITSD 223 (824)
Q Consensus 144 ~~~~~~~~~~~~~~~gkVGtGfs~~e~~~L~~~L~~~~~~~~~~~~~pP~~~~~~~~~~~~pdvWi~~P~~svVvEVka~ 223 (824)
+.+. .++.|+++ |||+++++.|.+.+.++ + ..|+|+.++
T Consensus 291 ~~~~------~~~~f~~~--~ltd~e~~~l~~~~~~~-------------------------------~--~~IvEc~~~ 329 (395)
T 1p16_A 291 QGSN------VHTDFAKL--DLSDDDWERLKALEQPL-------------------------------Q--GRIAECRQS 329 (395)
T ss_dssp CSTT------CEEEEEEE--CCCHHHHHHHHHSSSCC-------------------------------T--TCEEEEEEC
T ss_pred eCCc------ccceeeEE--EeCHHHHHHhHhhcccC-------------------------------C--CEEEEEEee
Confidence 7542 47788988 89999999886532110 1 137888753
Q ss_pred ccccccccccCCceeeccEEeeEecCCC-ccCcCCHHHHHHHHHh
Q 003386 224 IRTIRSEVFSAPYSLRFPRIDRVRYDKP-WHDCLDVQSFVELVHS 267 (824)
Q Consensus 224 ~~~~~s~~~~~g~tLRfPr~~~iR~DK~-~~e~~t~~el~el~~~ 267 (824)
. . ..| ||||.|+|.||+ ++...|+..+++++..
T Consensus 330 ~----~---~~g----~wr~~R~R~DK~~pN~~~t~~~vl~si~~ 363 (395)
T 1p16_A 330 T----T---KKG----YWEMLRFRNDKSNGNHISVVEKILVSIKD 363 (395)
T ss_dssp S----S---STT----EEEEEEECTTCSSCCBHHHHHHHHHHHHH
T ss_pred c----C---CCC----ccEEEEEeCCCCCcChHHHHHHHHHHHHc
Confidence 2 0 223 899999999999 8877888887777643
No 20
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=99.58 E-value=3.2e-15 Score=134.69 Aligned_cols=88 Identities=23% Similarity=0.394 Sum_probs=74.5
Q ss_pred CCCCCccCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCC-CCceEEEEecCCChhHHhHhcCCCeeecchHHHHHhcC
Q 003386 317 GETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLN-NSVTHCVAADNKGLKYEAAKRRGDVIHYSWVLDCCSQK 395 (824)
Q Consensus 317 ~~s~lF~Gl~FcV~~~~~~~sk~eLeklI~~~GG~vv~n~~-~s~Th~Ia~~~~t~K~~~a~~~~dIV~p~WV~DCI~~~ 395 (824)
..+.+|+|+.||+. +....++++|+++|.+|||+++.+.+ ..+||+|+....+.|++.+. ..+||+|+||+||++++
T Consensus 8 ~~~~lF~g~~~~is-g~~~~~~~~L~~~i~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~~~-~~~iV~p~Wl~dci~~~ 85 (97)
T 2ebw_A 8 TSSTIFSGVAIYVN-GYTDPSAEELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAG 85 (97)
T ss_dssp CCCCTTTTCEEEEC-SSCSSCHHHHHHHHHHTTCEECSSCCSSSCCEEECSCCCTTHHHHTS-SSCCBCTHHHHHHHHHT
T ss_pred CCCCCCCCeEEEEe-CCCcccHHHHHHHHHHcCCEEeeecCCCCCEEEEecCCChHHHHHhc-CCCEeChHHHHHHHHcC
Confidence 45689999999975 44456799999999999999987665 47999998776778888775 44999999999999999
Q ss_pred ccCCCCccccc
Q 003386 396 KLLQLQPKYYL 406 (824)
Q Consensus 396 ~lLp~eP~~ll 406 (824)
++||++||+++
T Consensus 86 ~~l~~~~Y~l~ 96 (97)
T 2ebw_A 86 RLLSYIPYQLY 96 (97)
T ss_dssp SCCCSGGGBSC
T ss_pred CccCchHcEec
Confidence 99999998654
No 21
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=99.54 E-value=2.2e-14 Score=149.83 Aligned_cols=211 Identities=16% Similarity=0.160 Sum_probs=134.5
Q ss_pred cCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEe--cCCCCceEEEEecC-CChhHHhHhcCC-CeeecchHHHHHhcCccC
Q 003386 323 SDMVFYFVNVPPAYSLDSLHKMVVENGGTFSM--NLNNSVTHCVAADN-KGLKYEAAKRRG-DVIHYSWVLDCCSQKKLL 398 (824)
Q Consensus 323 ~Gl~FcV~~~~~~~sk~eLeklI~~~GG~vv~--n~~~s~Th~Ia~~~-~t~K~~~a~~~~-dIV~p~WV~DCI~~~~lL 398 (824)
+++.|++++. ....+.++.++|..+||.++. +.+..+||+|+... .|.||..++..| .||+++||.+|+++|+++
T Consensus 8 ~~~~~~~Sg~-~~~~~~~l~~~i~~LGg~~~~~~~~~~~~THlV~~~~~RT~K~l~aia~G~wIvs~~wl~~s~~~g~~l 86 (235)
T 3al2_A 8 KQYIFQLSSL-NPQERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPLRNEKYLASVAAGKWVLHRSYLEACRTAGHFV 86 (235)
T ss_dssp CCCEEEEESC-CHHHHHHHHHHHHHTTCEECCSSSCCTTCCEEEESSCCCSHHHHHHHHTTCEEECTHHHHHHHHHTSCC
T ss_pred CCEEEEEcCC-CHHHHHHHHHHHHHcCCEEeccCCCCCCCcEEEECCCCCCHHHHHHHHcCCcCccHHHHHHHHHcCCCC
Confidence 5677888643 345678899999999999986 35568999998764 589998888888 999999999999999999
Q ss_pred CCCccccccCChhhHhhhhhhccccCCCccCCCChH--HHHHHHhccCCCCCcchhHHHhhhcCCCCCCCCCCCeEEEEc
Q 003386 399 QLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLA--DIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFY 476 (824)
Q Consensus 399 p~eP~~ll~~S~~t~~~~~~~~D~yGDSy~~dit~~--~L~~ll~~~~~se~~~~i~~l~~~~~~~~~~~lF~gc~~YL~ 476 (824)
+.++|.+.. +... |. ...++.. .|.....+- . ..+...-.......+|.|+.|||+
T Consensus 87 ~E~~ye~~~--~~~~-------d~-----~~~~~~~~~~l~~a~~r~-------R-~~l~~~~~~g~~~~lF~g~~v~l~ 144 (235)
T 3al2_A 87 QEEDYEWGS--SSIL-------DV-----LTGINVQQRRLALAAMRW-------R-KKIQQRQESGIVEGAFSGWKVILH 144 (235)
T ss_dssp CSGGGBTTS--HHHH-------TT-----CTTSCHHHHHHHHHHHHH-------H-HHHHHHHTTTCCSSTTTTCEEEEE
T ss_pred ChhceeecC--cchh-------cc-----ccCCChhhhHHHHHHHHH-------H-HHHHhcccccccCCCCCCcEEEEe
Confidence 988764321 1000 00 0001111 111100000 0 000000000001368999999998
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC-----CceEEEEecCCCcccchh-hhHHHHHHHhhhhccCCcc
Q 003386 477 HSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-----NATHVVVLSVLGYDVNFN-SLTESFTAREKHLLWNKKL 550 (824)
Q Consensus 477 g~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~ls-----~vTHVVV~~~~~~~~~~~-~Lr~~l~~~~~~~~~~~~~ 550 (824)
... ...+.++.+|+.+||+|..... +.||++|+...-...+.. .++. + ....+
T Consensus 145 ~~~------------~~~~~l~~ii~agGg~vl~~~~~~~~~~~t~~~vd~~~~~~~~~~~~~~~-~--------~~~~i 203 (235)
T 3al2_A 145 VDQ------------SREAGFKRLLQSGGAKVLPGHSVPLFKEATHLFSDLNKLKPDDSGVNIAE-A--------AAQNV 203 (235)
T ss_dssp CCH------------HHHHHHHHHHHHTTCEECSSCCGGGGGGCSEEEECC--------CCCHHH-H--------HHTTC
T ss_pred cCC------------CcHHHHHHHHHcCCcEEecCCCCCccccCceEEEecccCCccchhHHHHH-H--------HHcCC
Confidence 731 1345789999999999987643 479998863210000000 1111 1 12348
Q ss_pred EEecccHHHHHHHhCCccCCCCCCCCC
Q 003386 551 HVVRSQWLEDCLAKEQKSEEYEYSLKP 577 (824)
Q Consensus 551 ~IVt~~WLedCi~~g~~l~Ee~Y~v~~ 577 (824)
+||+.+||.+||-.....+.+.|.+..
T Consensus 204 ~~v~~ewlld~i~~~~~~~~~~y~l~~ 230 (235)
T 3al2_A 204 YCLRTEYIADYLMQESPPHVENYCLPE 230 (235)
T ss_dssp EEEETHHHHHHHHCSSCCCHHHHBCGG
T ss_pred cEEcHHHHHHHHhcCCCCChhheEccc
Confidence 999999999999999999999997764
No 22
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=99.52 E-value=6.5e-14 Score=144.83 Aligned_cols=191 Identities=16% Similarity=0.231 Sum_probs=129.9
Q ss_pred CccCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCCCCceEEEEecC-CChhHHhHhcCC-CeeecchHHHHHhcCccC
Q 003386 321 IFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADN-KGLKYEAAKRRG-DVIHYSWVLDCCSQKKLL 398 (824)
Q Consensus 321 lF~Gl~FcV~~~~~~~sk~eLeklI~~~GG~vv~n~~~s~Th~Ia~~~-~t~K~~~a~~~~-dIV~p~WV~DCI~~~~lL 398 (824)
.+.|+.||+++.. ...++++.++|..+||+++.+. ..+||+|+... .+.||..++..+ +||+|+||.+|+++++++
T Consensus 13 ~~~~~~i~~SG~~-~~~~~~l~~~i~~lGg~v~~~~-~~~THLI~~~~~rT~K~l~A~~~g~~IVs~~Wl~~c~~~~~~l 90 (219)
T 3sqd_A 13 PELTPFVLFTGFE-PVQVQQYIKKLYILGGEVAESA-QKCTHLIASKVTRTVKFLTAISVVKHIVTPEWLEECFRCQKFI 90 (219)
T ss_dssp GGGCCEEEECSCC-HHHHHHHHHHHHHTTCEECSSG-GGCSEEECSSCCCCHHHHHHTTTCSEEECHHHHHHHHHHTSCC
T ss_pred CCCCeEEEEeCCC-hHHHHHHHHHHHHCCCEEeCCC-CCceEEEECCCCCCHHHHHHHHcCCCEecHHHHHHHHHcCCCC
Confidence 4678899987543 3356789999999999998876 57999998643 578999998888 999999999999999999
Q ss_pred CCCccccccCChhhHhhhhhhccccCCCccCCCChHHHHHHHhccCCCCCcchhHHHhhhcCCCCCCCCCCCeEEEEccC
Q 003386 399 QLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHS 478 (824)
Q Consensus 399 p~eP~~ll~~S~~t~~~~~~~~D~yGDSy~~dit~~~L~~ll~~~~~se~~~~i~~l~~~~~~~~~~~lF~gc~~YL~g~ 478 (824)
|.++|. +.. ++.. ..||- + +...+.+ -+ ...||.|+.|||.+.
T Consensus 91 ~e~~y~-l~d-~~~e-------~~~~~------~---l~~~l~r------------a~-------~~~LF~G~~f~it~~ 133 (219)
T 3sqd_A 91 DEQNYI-LRD-AEAE-------VLFSF------S---LEESLKR------------AH-------VSPLFKAKYFYITPG 133 (219)
T ss_dssp CSGGGB-CCC-HHHH-------HHTTC------C---HHHHHHH------------HH-------HSCTTTTEEEEECTT
T ss_pred ChHhcc-CCC-chhh-------hhcCC------C---hHHHhhh------------hc-------cccccCCcEEEEeCC
Confidence 988763 321 1100 11221 1 1111100 00 235899999999875
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCCC-------------ceEEEEecCCCcccchhhhHHHHHHHhhhhc
Q 003386 479 TEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLAN-------------ATHVVVLSVLGYDVNFNSLTESFTAREKHLL 545 (824)
Q Consensus 479 ~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~ls~-------------vTHVVV~~~~~~~~~~~~Lr~~l~~~~~~~~ 545 (824)
. . .. .+.|+.+|+.+||++...+.. ...||+..+. +....+..+
T Consensus 134 ~--~-~~--------~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~~~~~~ivis~~~----d~~~~~~~~-------- 190 (219)
T 3sqd_A 134 I--C-PS--------LSTMKAIVECAGGKVLSKQPSFRKLMEHKQNSSLSEIILISCEN----DLHLCREYF-------- 190 (219)
T ss_dssp C--S-SC--------HHHHHHHHHHTTCEEESSCCCHHHHHHHHHCTTSCEEEEEECGG----GGGGGHHHH--------
T ss_pred C--C-CC--------HHHHHHHHHHCCCEEECCCCchHHhhhhhcccCCCCEEEEeccc----HHHHHHHHH--------
Confidence 3 1 12 347889999999999998753 2345554322 222222221
Q ss_pred cCCccEEecccHHHHHHHhCCccCCCCCCC
Q 003386 546 WNKKLHVVRSQWLEDCLAKEQKSEEYEYSL 575 (824)
Q Consensus 546 ~~~~~~IVt~~WLedCi~~g~~l~Ee~Y~v 575 (824)
...+.|++.+||..||-... ++-+.|.+
T Consensus 191 -~~~~~v~s~E~il~~Il~q~-ld~~~~~~ 218 (219)
T 3sqd_A 191 -ARGIDVHNAEFVLTGVLTQT-LDYESYKF 218 (219)
T ss_dssp -HTTCCCEETHHHHHHHHHTC-CCTTTSBC
T ss_pred -HCCCcEEeHHHHHHHHHhee-ecchhccc
Confidence 13568999999999999655 47777764
No 23
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=99.48 E-value=1.1e-13 Score=132.13 Aligned_cols=93 Identities=28% Similarity=0.386 Sum_probs=72.9
Q ss_pred CCCCCCCCCeEEEEccCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHH
Q 003386 462 QDKWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAR 540 (824)
Q Consensus 462 ~~~~~lF~gc~~YL~g~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~ls-~vTHVVV~~~~~~~~~~~~Lr~~l~~~ 540 (824)
..+..+|+||+|||.|+.. .....|..+|+.+||++++.++ .|||||+.+.. .+ +++.+.
T Consensus 35 ~~~~~lF~g~~i~i~G~~~-----------~~~~~L~~~i~~~Gg~v~~~l~~~vTHvI~~~~~---~~---~~~~~~-- 95 (132)
T 1wf6_A 35 QAPEDLLDGCRIYLCGFSG-----------RKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDYD---DE---LKQFWN-- 95 (132)
T ss_dssp CCCTTTTTTCEEEEESCCS-----------HHHHHHHHHHHHTTCEEESSCCSSCCEEEESSCC---SH---HHHHHH--
T ss_pred cccccccCCEEEEEECCCh-----------HHHHHHHHHHHHCCCEEeCcCCCCCeEEEECCch---HH---HHHHHH--
Confidence 4567899999999999742 2457899999999999999997 69999997532 11 222221
Q ss_pred hhhhccCCccEEecccHHHHHHHhCCccCCCCCCCCC
Q 003386 541 EKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKP 577 (824)
Q Consensus 541 ~~~~~~~~~~~IVt~~WLedCi~~g~~l~Ee~Y~v~~ 577 (824)
.....++||+++||++|++++++|||+.|.+..
T Consensus 96 ----~~~~~~~iV~~~Wv~dsi~~~~ll~e~~Y~~~~ 128 (132)
T 1wf6_A 96 ----KSAHRPHVVGAKWLLECFSKGYMLSEEPYIHSG 128 (132)
T ss_dssp ----HSCCCCCEEEHHHHHHHHHHSSCCCSGGGBCCC
T ss_pred ----hhCCCCeEechHHHHHHHHcCCcCCHhhccCCC
Confidence 013568999999999999999999999997653
No 24
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=99.47 E-value=7.1e-14 Score=124.07 Aligned_cols=85 Identities=28% Similarity=0.384 Sum_probs=69.4
Q ss_pred CCCCccCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCC--CCceEEEEecCCChhHHhHhcCCCeeecchHHHHHhcC
Q 003386 318 ETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLN--NSVTHCVAADNKGLKYEAAKRRGDVIHYSWVLDCCSQK 395 (824)
Q Consensus 318 ~s~lF~Gl~FcV~~~~~~~sk~eLeklI~~~GG~vv~n~~--~s~Th~Ia~~~~t~K~~~a~~~~dIV~p~WV~DCI~~~ 395 (824)
.+.+|+|+.|||.+.. ..++.+|+++|..|||+++.+++ ..+||+|+....+.|+..+ ...+||+|+||+||++++
T Consensus 4 ~~~~f~g~~~~i~g~~-~~~~~~l~~~i~~~GG~~~~~~~~~~~~THlI~~~~~~~K~~~~-~~~~iV~~~Wi~dci~~~ 81 (92)
T 4id3_A 4 SSKIFKNCVIYINGYT-KPGRLQLHEMIVLHGGKFLHYLSSKKTVTHIVASNLPLKKRIEF-ANYKVVSPDWIVDSVKEA 81 (92)
T ss_dssp --CTTTTCEEEECSCC-SSCHHHHHHHHHHTTCEEESSCCCTTTCCEEECSCCCHHHHHHT-TTSCEECTHHHHHHHHHT
T ss_pred cccccCCEEEEEeCCC-CcCHHHHHHHHHHCCCEEEEEecCCCceEEEEecCCCHHHHHHc-CCCCEEcccHHHHHHHcC
Confidence 4679999999997533 34689999999999999999887 6899999877666665443 223999999999999999
Q ss_pred ccCCCCccc
Q 003386 396 KLLQLQPKY 404 (824)
Q Consensus 396 ~lLp~eP~~ 404 (824)
++||.++|.
T Consensus 82 ~~l~e~~Y~ 90 (92)
T 4id3_A 82 RLLPWQNYS 90 (92)
T ss_dssp SCCCGGGGB
T ss_pred CcCChhhcc
Confidence 999999863
No 25
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.7e-13 Score=130.17 Aligned_cols=90 Identities=20% Similarity=0.292 Sum_probs=79.3
Q ss_pred CCCCccCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhHHhHhcCC-CeeecchHHHHHhcCc
Q 003386 318 ETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQKK 396 (824)
Q Consensus 318 ~s~lF~Gl~FcV~~~~~~~sk~eLeklI~~~GG~vv~n~~~s~Th~Ia~~~~t~K~~~a~~~~-dIV~p~WV~DCI~~~~ 396 (824)
.+.+|.|+.|||.+.. ..++.+|.++|..+||++..+++..+||+|+....+.||..|..++ +||+++||+||+++++
T Consensus 19 ~~~~f~g~~i~itG~~-~~~r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~~~~~~K~~~A~~~gi~IV~~~Wl~d~~~~~~ 97 (129)
T 2d8m_A 19 LGKILQGVVVVLSGFQ-NPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRIVRKEWVLDCHRMRR 97 (129)
T ss_dssp HTTTSTTEEEEEESCC-TTHHHHHHHHHHHTTEEEESSCCTTCCEEEESSSSCHHHHHHHHHTCEEEETHHHHHHHHTTS
T ss_pred ccccCCCeEEEEeCCC-cHHHHHHHHHHHHcCCEEeCCcCCCCeEEEecCCCChHHHHHHHCCCcEecHHHHHHHHHhCC
Confidence 3468999999997654 5689999999999999999999888999999988899999998877 9999999999999999
Q ss_pred cCCCCccccccCC
Q 003386 397 LLQLQPKYYLHLS 409 (824)
Q Consensus 397 lLp~eP~~ll~~S 409 (824)
+||+.+| ++...
T Consensus 98 ~l~e~~Y-~l~~~ 109 (129)
T 2d8m_A 98 RLPSQRY-LMAGP 109 (129)
T ss_dssp CCCGGGG-BCSSS
T ss_pred cCChHhc-ccCCC
Confidence 9999986 44443
No 26
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=2.9e-13 Score=123.11 Aligned_cols=81 Identities=19% Similarity=0.359 Sum_probs=64.5
Q ss_pred CCCCCccCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecC-----------CCCceEEEEecCCChhHHhHhcCCCeeec
Q 003386 317 GETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNL-----------NNSVTHCVAADNKGLKYEAAKRRGDVIHY 385 (824)
Q Consensus 317 ~~s~lF~Gl~FcV~~~~~~~sk~eLeklI~~~GG~vv~n~-----------~~s~Th~Ia~~~~t~K~~~a~~~~dIV~p 385 (824)
+.++||+|++|||.. ..+++.|+.+|++|||+++++. ...+||+|+ ++.+.+.. ....++|+|
T Consensus 8 ~~~~LF~g~~F~i~~---e~p~~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~-drp~~~~~--~~~r~~VqP 81 (100)
T 2ep8_A 8 KHKKLFEGLKFFLNR---EVPREALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIV-DRPGQQTS--VIGRCYVQP 81 (100)
T ss_dssp CSCCTTSSCEEECCS---SSCHHHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEEC-SCTTTSCC--BTTBEEECT
T ss_pred chHHHcCCcEEEEec---CCCHHHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEe-cccchhhh--cCCCeEEcc
Confidence 457899999999964 4578999999999999999873 347899985 55444211 111299999
Q ss_pred chHHHHHhcCccCCCCcc
Q 003386 386 SWVLDCCSQKKLLQLQPK 403 (824)
Q Consensus 386 ~WV~DCI~~~~lLp~eP~ 403 (824)
+||+||++++.|||+++|
T Consensus 82 qWV~Dcin~~~lLp~~~Y 99 (100)
T 2ep8_A 82 QWVFDSVNARLLLPVAEY 99 (100)
T ss_dssp HHHHHHHHHTSCCCTTTC
T ss_pred hHHHHHHhcCCcCChhhc
Confidence 999999999999999985
No 27
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=99.40 E-value=2.9e-13 Score=124.35 Aligned_cols=89 Identities=18% Similarity=0.352 Sum_probs=75.4
Q ss_pred cCCCCCccCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCCCCceEEEE---ecCCChhHHhHhcCC-CeeecchHHHH
Q 003386 316 KGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVA---ADNKGLKYEAAKRRG-DVIHYSWVLDC 391 (824)
Q Consensus 316 ~~~s~lF~Gl~FcV~~~~~~~sk~eLeklI~~~GG~vv~n~~~s~Th~Ia---~~~~t~K~~~a~~~~-dIV~p~WV~DC 391 (824)
...+.+|.|+.|||.+... .++.+|.++|.++||++..+++..+||+|+ ....+.||..|...+ +||+++||.||
T Consensus 10 ~~~~~~l~g~~i~isg~~~-~~r~~l~~li~~~Gg~v~~~~s~~~THlI~~~~~~~~~~K~~~A~~~gi~IV~~~Wl~~c 88 (107)
T 3l3e_A 10 EEAPKPLHKVVVCVSKKLS-KKQSELNGIAASLGADYRRSFDETVTHFIYQGRPNDTNREYKSVKERGVHIVSEHWLLDC 88 (107)
T ss_dssp ----CTTTTCEEEECGGGG-GGHHHHHHHHHHTTCEEESSCCTTCCEEECCCCTTCCCHHHHHHHHTTCEEECHHHHHHH
T ss_pred ccccCCCCCeEEEEeCCCh-HhHHHHHHHHHHcCCEEeccccCCceEEEecCCCCCCCHHHHHHHHCCCeEecHHHHHHH
Confidence 3456799999999986544 679999999999999999999888999998 344578999998888 99999999999
Q ss_pred HhcCccCCCCcccc
Q 003386 392 CSQKKLLQLQPKYY 405 (824)
Q Consensus 392 I~~~~lLp~eP~~l 405 (824)
+++++++|..+|.+
T Consensus 89 ~~~~~~l~e~~Y~~ 102 (107)
T 3l3e_A 89 AQECKHLPESLYPH 102 (107)
T ss_dssp HHHTSCCCGGGCCT
T ss_pred HHhCCCCchhhCCC
Confidence 99999999887744
No 28
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.39 E-value=4.4e-13 Score=123.82 Aligned_cols=89 Identities=21% Similarity=0.312 Sum_probs=71.5
Q ss_pred CCCCCCCeEEEEccCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhh
Q 003386 464 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREK 542 (824)
Q Consensus 464 ~~~lF~gc~~YL~g~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~ls-~vTHVVV~~~~~~~~~~~~Lr~~l~~~~~ 542 (824)
+..+|.||+|||.++.. ..+..|+.+|..+||+++..++ .|||||+....+.+...
T Consensus 9 ~~~~F~g~~i~~sg~~~-----------~~r~~l~~~i~~~GG~~~~~~~~~~THLV~~~~~~~K~~~------------ 65 (109)
T 2cou_A 9 KVPPFQDCILSFLGFSD-----------EEKHSMEEMTEMQGGSYLPVGDERCTHLIVEENTVKDLPF------------ 65 (109)
T ss_dssp CCCTTTTCBEEEESSCH-----------HHHHHHHHHHHHHTCBCCCTTCTTCSEEEECTTTCSSCSS------------
T ss_pred cCCcCCCeEEEecCCCH-----------HHHHHHHHHHHHcCCEEecccCCCccEEEEeCCccHHHHH------------
Confidence 45689999999999751 2356788999999999999887 69999998654322111
Q ss_pred hhccCCccEEecccHHHHHHHhCCccCCCCCCCCC
Q 003386 543 HLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKP 577 (824)
Q Consensus 543 ~~~~~~~~~IVt~~WLedCi~~g~~l~Ee~Y~v~~ 577 (824)
.....++||+++||++|++.++++||+.|.+..
T Consensus 66 --a~~~~i~IV~~~Wl~dsi~~g~~ldE~~Y~~~~ 98 (109)
T 2cou_A 66 --EPSKKLFVVKQEWFWGSIQMDARAGETMYLYEK 98 (109)
T ss_dssp --CCCTTSEEECHHHHHHHHHTTSCCCGGGTBCCC
T ss_pred --HHHCCCeEecHHHHHHHHHcCCcCChhccCCCC
Confidence 124578999999999999999999999998765
No 29
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=99.38 E-value=8.4e-13 Score=120.81 Aligned_cols=87 Identities=20% Similarity=0.309 Sum_probs=74.8
Q ss_pred CCCccCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhHHhHhcCC---CeeecchHHHHHhcC
Q 003386 319 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG---DVIHYSWVLDCCSQK 395 (824)
Q Consensus 319 s~lF~Gl~FcV~~~~~~~sk~eLeklI~~~GG~vv~n~~~s~Th~Ia~~~~t~K~~~a~~~~---dIV~p~WV~DCI~~~ 395 (824)
.++|+|+.||+.+......+..|+++|.++||++....+.++||+|+....+.++..+.... .+|+|+||++|++++
T Consensus 5 pd~F~g~~f~l~~~~p~~~r~~l~ryiia~GG~v~~~~~~~vTHvIt~~~~d~~~~~a~~~~p~~~~V~P~WI~~Ci~~~ 84 (104)
T 3pc6_A 5 PDFFEGKHFFLYGEFPGDERRRLIRYVTAFNGELEDYMNERVQFVITAQEWDPNFEEALMENPSLAFVRPRWIYSCNEKQ 84 (104)
T ss_dssp CCTTTTCEEEEESCCSTTHHHHHHHHHHHTTCEECSSCCTTCCEEEESSCCCHHHHHHHTTCTTCEEECHHHHHHHHHHT
T ss_pred chhhCCeEEEEcCCCcHHHHHHHHHHHHHcCCEEEcccCCCceEEEeCCCCChhHHHHhhhCCCCeEEccHHHHHHHhcC
Confidence 46999999999876545678999999999999988888788999998877778888776543 899999999999999
Q ss_pred ccCCCCcccc
Q 003386 396 KLLQLQPKYY 405 (824)
Q Consensus 396 ~lLp~eP~~l 405 (824)
+++|++||-+
T Consensus 85 klvp~~~y~~ 94 (104)
T 3pc6_A 85 KLLPHQLYGV 94 (104)
T ss_dssp SCCCGGGGBC
T ss_pred ccCCccccee
Confidence 9999998744
No 30
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=99.38 E-value=8.9e-13 Score=122.27 Aligned_cols=89 Identities=22% Similarity=0.312 Sum_probs=72.8
Q ss_pred CCCCCCCeEEEEccCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhh
Q 003386 464 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREK 542 (824)
Q Consensus 464 ~~~lF~gc~~YL~g~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~ls-~vTHVVV~~~~~~~~~~~~Lr~~l~~~~~ 542 (824)
+..+|.||+|||.|+.. ..+..|+.+|..+||++...++ .|||||+....+.++..
T Consensus 18 ~~p~F~g~~Ic~sGf~~-----------~er~~l~~~i~~~GG~~~~~l~~~cTHLV~~~~~~~K~~~------------ 74 (112)
T 3l46_A 18 GVPPFQDCILSFLGFSD-----------EEKTNMEEMTEMQGGKYLPLGDERCTHLVVEENIVKDLPF------------ 74 (112)
T ss_dssp CCCTTTTCEECEESCCH-----------HHHHHHHHHHHHTTCEECCTTCTTCSEEEECTTTBSSCSS------------
T ss_pred CCCccCCeEEEEeCCCH-----------HHHHHHHHHHHHcCCEECcccCCCceEEEecCCchhhHHH------------
Confidence 45689999999999751 2456899999999999999888 69999998765332111
Q ss_pred hhccCCccEEecccHHHHHHHhCCccCCCCCCCCC
Q 003386 543 HLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKP 577 (824)
Q Consensus 543 ~~~~~~~~~IVt~~WLedCi~~g~~l~Ee~Y~v~~ 577 (824)
...+.++||+++||++||+.|.++||..|.+..
T Consensus 75 --A~~~~i~IVs~eWl~dsi~~g~~ldE~~Y~~~~ 107 (112)
T 3l46_A 75 --EPSKKLYVVKQEWFWGSIQMDARAGETMYLYEK 107 (112)
T ss_dssp --CCCSSCEEEEHHHHHHHHHHTSCCCGGGSBCCC
T ss_pred --HHHCCeeEecHHHHHHHHHcCCccChhhceecc
Confidence 124789999999999999999999999999854
No 31
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=99.36 E-value=1.7e-12 Score=118.82 Aligned_cols=93 Identities=20% Similarity=0.345 Sum_probs=73.2
Q ss_pred CCCCCCeEEEEccCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhhh
Q 003386 465 WSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREKH 543 (824)
Q Consensus 465 ~~lF~gc~~YL~g~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~ls-~vTHVVV~~~~~~~~~~~~Lr~~l~~~~~~ 543 (824)
..||.||+|||++.. +..+ ...|.++|.++||.+.+.++ +|||||++.+.++ .+..++
T Consensus 5 pd~F~g~~f~l~~~~--p~~~--------r~~l~ryiia~GG~v~~~~~~~vTHvIt~~~~d~--~~~~a~--------- 63 (104)
T 3pc6_A 5 PDFFEGKHFFLYGEF--PGDE--------RRRLIRYVTAFNGELEDYMNERVQFVITAQEWDP--NFEEAL--------- 63 (104)
T ss_dssp CCTTTTCEEEEESCC--STTH--------HHHHHHHHHHTTCEECSSCCTTCCEEEESSCCCH--HHHHHH---------
T ss_pred chhhCCeEEEEcCCC--cHHH--------HHHHHHHHHHcCCEEEcccCCCceEEEeCCCCCh--hHHHHh---------
Confidence 358999999999964 2222 46789999999999999887 6999999876532 222111
Q ss_pred hccCCccEEecccHHHHHHHhCCccCCCCCCCCCCC
Q 003386 544 LLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPTG 579 (824)
Q Consensus 544 ~~~~~~~~IVt~~WLedCi~~g~~l~Ee~Y~v~~~~ 579 (824)
.......+|+++||.+|++++++||+++|.+.+..
T Consensus 64 -~~~p~~~~V~P~WI~~Ci~~~klvp~~~y~~~~~~ 98 (104)
T 3pc6_A 64 -MENPSLAFVRPRWIYSCNEKQKLLPHQLYGVVPQA 98 (104)
T ss_dssp -TTCTTCEEECHHHHHHHHHHTSCCCGGGGBCCCCG
T ss_pred -hhCCCCeEEccHHHHHHHhcCccCCcccceecchh
Confidence 12457899999999999999999999999987764
No 32
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=99.35 E-value=8.2e-13 Score=121.65 Aligned_cols=93 Identities=13% Similarity=0.221 Sum_probs=70.8
Q ss_pred CCCCCCeEEEEccCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhhh
Q 003386 465 WSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREKH 543 (824)
Q Consensus 465 ~~lF~gc~~YL~g~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~ls-~vTHVVV~~~~~~~~~~~~Lr~~l~~~~~~ 543 (824)
.++|+||++|++.+.....++ +.+.+...++++||+++..++ ++||||+.+..+. .+ +...
T Consensus 5 ~p~f~g~vvyvd~~~~~g~~~-------~s~~l~~~l~~~GA~v~~~l~~~vTHvV~~~~~~~--~~---~~A~------ 66 (107)
T 3pa6_A 5 APILKDVVAYVEVWSSNGTEN-------YSKTFTTQLVDMGAKVSKTFNKQVTHVIFKDGYQS--TW---DKAQ------ 66 (107)
T ss_dssp CCTTTTCEEEEEEBCTTSCCB-------CHHHHHHHHHHTTCEECSSCCTTCCEEEEESCCHH--HH---HHHH------
T ss_pred ccccCCEEEEEeccCCCChhh-------HHHHHHHHHHHcCCEEecccCCCccEEEEeCCCCh--HH---HHHh------
Confidence 468999999999875211112 135788999999999999999 6999999865421 12 1111
Q ss_pred hccCCccEEecccHHHHHHHhCCccCCCCCCCCCC
Q 003386 544 LLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPT 578 (824)
Q Consensus 544 ~~~~~~~~IVt~~WLedCi~~g~~l~Ee~Y~v~~~ 578 (824)
...++||+++||++|+++++++||+.|.+..+
T Consensus 67 ---~~~i~iV~~~Wv~~C~~~~~~vdE~~Y~i~~~ 98 (107)
T 3pa6_A 67 ---KRGVKLVSVLWVEKCRTAGAHIDESLFPAANM 98 (107)
T ss_dssp ---HHTCEEECHHHHHHHHHHTSCCCGGGSBCCCT
T ss_pred ---cCCCEEECHHHHHHHHHhCccCChhcccCCCC
Confidence 13589999999999999999999999987554
No 33
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=1.6e-12 Score=115.31 Aligned_cols=85 Identities=27% Similarity=0.393 Sum_probs=66.6
Q ss_pred CCCCCCCeEEEEccCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC---CceEEEEecCCCcccchhhhHHHHHHH
Q 003386 464 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA---NATHVVVLSVLGYDVNFNSLTESFTAR 540 (824)
Q Consensus 464 ~~~lF~gc~~YL~g~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~ls---~vTHVVV~~~~~~~~~~~~Lr~~l~~~ 540 (824)
+..+|+||+|||.++.. .+ ...|+.+|..+||+++..++ .|||||+....+ ..+.
T Consensus 4 ~~~~f~g~~~~i~g~~~---~~--------~~~l~~~i~~~GG~~~~~~~~~~~~THlI~~~~~~-----~K~~------ 61 (92)
T 4id3_A 4 SSKIFKNCVIYINGYTK---PG--------RLQLHEMIVLHGGKFLHYLSSKKTVTHIVASNLPL-----KKRI------ 61 (92)
T ss_dssp --CTTTTCEEEECSCCS---SC--------HHHHHHHHHHTTCEEESSCCCTTTCCEEECSCCCH-----HHHH------
T ss_pred cccccCCEEEEEeCCCC---cC--------HHHHHHHHHHCCCEEEEEecCCCceEEEEecCCCH-----HHHH------
Confidence 35689999999999642 12 34688999999999999996 599999976431 1111
Q ss_pred hhhhccCCccEEecccHHHHHHHhCCccCCCCCCC
Q 003386 541 EKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSL 575 (824)
Q Consensus 541 ~~~~~~~~~~~IVt~~WLedCi~~g~~l~Ee~Y~v 575 (824)
....++||+++||.+|+++++++||++|.+
T Consensus 62 -----~~~~~~iV~~~Wi~dci~~~~~l~e~~Y~l 91 (92)
T 4id3_A 62 -----EFANYKVVSPDWIVDSVKEARLLPWQNYSL 91 (92)
T ss_dssp -----HTTTSCEECTHHHHHHHHHTSCCCGGGGBC
T ss_pred -----HcCCCCEEcccHHHHHHHcCCcCChhhccc
Confidence 124689999999999999999999999986
No 34
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=3.1e-12 Score=119.69 Aligned_cols=96 Identities=15% Similarity=0.161 Sum_probs=73.4
Q ss_pred CCCCCCCCeEEEEccCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHh
Q 003386 463 DKWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTARE 541 (824)
Q Consensus 463 ~~~~lF~gc~~YL~g~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~ls-~vTHVVV~~~~~~~~~~~~Lr~~l~~~~ 541 (824)
.|..+|+||++||..+. |...+++.+.++++++||+|++.++ .|||||+.+. + ..++..++. .
T Consensus 16 ~p~~~F~g~~iy~v~~~---------~g~~R~~~l~~l~r~~G~~V~~~ls~~VTHVVve~~--~---~~e~~~~l~--~ 79 (120)
T 2coe_A 16 PQDIKFQDLVVFILEKK---------MGTTRRALLMELARRKGFRVENELSDSVTHIVAENN--S---GSDVLEWLQ--A 79 (120)
T ss_dssp SSCCSCTTCEEEEECTT---------TCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEESSC--C---HHHHHHHHH--H
T ss_pred CcccccCCeEEEEeecc---------cchHHHHHHHHHHHHcCCEEeeccCCCcCEEEecCC--C---HHHHHHHHh--c
Confidence 46789999999998763 2236788999999999999999998 5999999632 2 334444442 1
Q ss_pred hhhccCCccEEecccHHHHHHHhCCccCCCCCC
Q 003386 542 KHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYS 574 (824)
Q Consensus 542 ~~~~~~~~~~IVt~~WLedCi~~g~~l~Ee~Y~ 574 (824)
.++.....++||+..||++||++|++|+|+.|.
T Consensus 80 ~~l~~~~~~~lv~i~Wl~esmk~g~lv~ee~~~ 112 (120)
T 2coe_A 80 QKVQVSSQPELLDVSWLIECIGAGKPVEMTGKH 112 (120)
T ss_dssp CCCCCSSCCEEEEHHHHHHHHHTTSCCCCSSSS
T ss_pred cccccccccEEeecHHHHHHHHcCCccCcccce
Confidence 111223468999999999999999999997764
No 35
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=99.33 E-value=7e-13 Score=122.98 Aligned_cols=85 Identities=14% Similarity=0.173 Sum_probs=75.6
Q ss_pred CCCccCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhHHhHhcCC-CeeecchHHHHHhcCcc
Q 003386 319 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQKKL 397 (824)
Q Consensus 319 s~lF~Gl~FcV~~~~~~~sk~eLeklI~~~GG~vv~n~~~s~Th~Ia~~~~t~K~~~a~~~~-dIV~p~WV~DCI~~~~l 397 (824)
..+|+||.||+.+.. ...+.+|+++|.+|||++..+++..+||+|+....+.||..+.+++ +||+++||.|||+.|..
T Consensus 19 ~p~F~g~~Ic~sGf~-~~er~~l~~~i~~~GG~~~~~l~~~cTHLV~~~~~~~K~~~A~~~~i~IVs~eWl~dsi~~g~~ 97 (112)
T 3l46_A 19 VPPFQDCILSFLGFS-DEEKTNMEEMTEMQGGKYLPLGDERCTHLVVEENIVKDLPFEPSKKLYVVKQEWFWGSIQMDAR 97 (112)
T ss_dssp CCTTTTCEECEESCC-HHHHHHHHHHHHHTTCEECCTTCTTCSEEEECTTTBSSCSSCCCSSCEEEEHHHHHHHHHHTSC
T ss_pred CCccCCeEEEEeCCC-HHHHHHHHHHHHHcCCEECcccCCCceEEEecCCchhhHHHHHHCCeeEecHHHHHHHHHcCCc
Confidence 458999999997644 5678999999999999999999889999999887788899888888 99999999999999999
Q ss_pred CCCCccc
Q 003386 398 LQLQPKY 404 (824)
Q Consensus 398 Lp~eP~~ 404 (824)
++...|.
T Consensus 98 ldE~~Y~ 104 (112)
T 3l46_A 98 AGETMYL 104 (112)
T ss_dssp CCGGGSB
T ss_pred cChhhce
Confidence 9977653
No 36
>1ckm_A MRNA capping enzyme; nucleotidyltransferase; HET: GTP; 2.50A {Paramecium bursaria chlorella virus 1} SCOP: b.40.4.6 d.142.2.3 PDB: 1ckn_A* 1cko_A* 1ckn_B*
Probab=99.33 E-value=1.9e-12 Score=141.63 Aligned_cols=84 Identities=13% Similarity=0.141 Sum_probs=62.9
Q ss_pred EEEEEccHH-------------HHHHHHHHhhcCC-----CC-ceEEecCCHHHHHHHH---HHHHhC--CCceEEEeCC
Q 003386 35 VCVHVYMLS-------------QLRSQIMAADQTG-----EP-CWSLVAHNVDEVEKFF---KETIEN--RDEGIVLKDL 90 (824)
Q Consensus 35 v~~~~FDll-------------~lr~~L~~l~~~~-----~~-~~~~~~~~~~di~~~~---~~ai~~--g~EGIV~K~~ 90 (824)
++|++|||| +|+++|++++... .+ .+........+++++| ..++.+ |.||||+|+.
T Consensus 141 ~~f~vFDlL~~~G~dl~~~pl~eRr~~L~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yg~EGlI~K~~ 220 (330)
T 1ckm_A 141 FAFVLFDAVVVSGVTVSQMDLASRFFAMKRSLKEFKNVPEDPAILRYKEWIPLEHPTIIKDHLKKANAIYHTDGLIIMSV 220 (330)
T ss_dssp EEEEEEEEEEETTEECTTSCHHHHHHHHHHHHTTCCCCTTSSSEEEECCCEETTCHHHHHHHHHHHHHHSCEEEEEEEES
T ss_pred EEEEEEeeeeeCCcccccCCHHHHHHHHHHHHhhhcccCCCCeEEEEEEEEehhHHHHHHHHHHHHhccCCCceEEEeeC
Confidence 789999986 5789999998631 12 2443332222667777 467778 9999999999
Q ss_pred CCCCcCCCCCCCeEEEccccccCCCcccEEEE
Q 003386 91 GSKWEPGDRSGKWLKLKPEYIRAGSDLDVLII 122 (824)
Q Consensus 91 dS~Y~pg~Rs~~WiKiK~~y~~~ge~lDlvVI 122 (824)
+|+|.+| |+.+|+|+||.+. .++|++|+
T Consensus 221 dspY~~G-r~~~~lKwK~~~~---~tvDfvi~ 248 (330)
T 1ckm_A 221 DEPVIYG-RNFNLFKLKPGTH---HTIDFIIM 248 (330)
T ss_dssp SSCCCCE-EEEEEEEECSTTC---CCEEEEEC
T ss_pred CCcccCC-CccCeEEEEeCCC---ceEEEEEE
Confidence 9999999 7789999999663 48997665
No 37
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=99.31 E-value=4.1e-13 Score=123.47 Aligned_cols=98 Identities=16% Similarity=0.234 Sum_probs=70.9
Q ss_pred CCCCCCCCeEEEEccCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHh
Q 003386 463 DKWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTARE 541 (824)
Q Consensus 463 ~~~~lF~gc~~YL~g~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~ls-~vTHVVV~~~~~~~~~~~~Lr~~l~~~~ 541 (824)
.+..+|+||+|||..... . . .+++.+...++.+||++++.++ +||||||++.. +++++-+++..
T Consensus 7 ~~~~~F~g~~v~~~p~~~-~-~-------~r~~i~~~~a~~~Ga~v~~~~~~~vTHVVvd~~~----s~~~~l~~l~~-- 71 (106)
T 2jw5_A 7 EAEEWLSSLRAHVVRTGI-G-R-------ARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGM----DYERALRLLRL-- 71 (106)
T ss_dssp CGGGCGGGSCCCBCTTTC-C-S-------SSTTHHHHHHHHTTCCCCSTTCTTCCEEEECSSS----CHHHHHHHTTC--
T ss_pred cCcCEeCCeEEEEEecCC-c-h-------HHHHHHHHHHHHcCCEEeeccCCCccEEEEcCCC----CHHHHHHHHhh--
Confidence 467899999999975431 1 1 1234667789999999999997 69999997533 23333333311
Q ss_pred hhhccCCccEEecccHHHHHHHhCCccCCCCCCCCC
Q 003386 542 KHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKP 577 (824)
Q Consensus 542 ~~~~~~~~~~IVt~~WLedCi~~g~~l~Ee~Y~v~~ 577 (824)
......++||+++||++||+++++|||+.|.+..
T Consensus 72 --~~l~~~~~iV~~~Wv~dci~~~~llde~~y~~~~ 105 (106)
T 2jw5_A 72 --PQLPPGAQLVKSAWLSLCLQERRLVDVAGFSIFI 105 (106)
T ss_dssp --SSCCSSCEEEEHHHHHHHHHTCSCCCGGGTBCSC
T ss_pred --cccCCCcEEecCchHHHHHhcCcccCcccccccC
Confidence 0112467999999999999999999999997653
No 38
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.29 E-value=9.7e-13 Score=121.50 Aligned_cols=86 Identities=15% Similarity=0.217 Sum_probs=76.3
Q ss_pred CCCccCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhHHhHhcCC-CeeecchHHHHHhcCcc
Q 003386 319 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQKKL 397 (824)
Q Consensus 319 s~lF~Gl~FcV~~~~~~~sk~eLeklI~~~GG~vv~n~~~s~Th~Ia~~~~t~K~~~a~~~~-dIV~p~WV~DCI~~~~l 397 (824)
..+|+|+.||+.+.. ...+.+|.++|..|||++....+..+||+|+....+.||+.+.+++ +||+++||.||++++++
T Consensus 10 ~~~F~g~~i~~sg~~-~~~r~~l~~~i~~~GG~~~~~~~~~~THLV~~~~~~~K~~~a~~~~i~IV~~~Wl~dsi~~g~~ 88 (109)
T 2cou_A 10 VPPFQDCILSFLGFS-DEEKHSMEEMTEMQGGSYLPVGDERCTHLIVEENTVKDLPFEPSKKLFVVKQEWFWGSIQMDAR 88 (109)
T ss_dssp CCTTTTCBEEEESSC-HHHHHHHHHHHHHHTCBCCCTTCTTCSEEEECTTTCSSCSSCCCTTSEEECHHHHHHHHHTTSC
T ss_pred CCcCCCeEEEecCCC-HHHHHHHHHHHHHcCCEEecccCCCccEEEEeCCccHHHHHHHHCCCeEecHHHHHHHHHcCCc
Confidence 469999999997643 4578999999999999999888889999999877788899888887 99999999999999999
Q ss_pred CCCCcccc
Q 003386 398 LQLQPKYY 405 (824)
Q Consensus 398 Lp~eP~~l 405 (824)
++..+|.+
T Consensus 89 ldE~~Y~~ 96 (109)
T 2cou_A 89 AGETMYLY 96 (109)
T ss_dssp CCGGGTBC
T ss_pred CChhccCC
Confidence 99888644
No 39
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=99.28 E-value=1.1e-11 Score=128.18 Aligned_cols=193 Identities=13% Similarity=0.192 Sum_probs=119.6
Q ss_pred CeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCCCCceEEEEecC-CChhHHhHhcCC-CeeecchHHHHHhcCccCCCC
Q 003386 324 DMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADN-KGLKYEAAKRRG-DVIHYSWVLDCCSQKKLLQLQ 401 (824)
Q Consensus 324 Gl~FcV~~~~~~~sk~eLeklI~~~GG~vv~n~~~s~Th~Ia~~~-~t~K~~~a~~~~-dIV~p~WV~DCI~~~~lLp~e 401 (824)
+..|++++.... ++.++|..+||.++.+.. .+||+|+... .|.||..++..| +||+|+||.+|++++++++.+
T Consensus 8 ~~~v~fSG~~~~----~~~~~i~~lGg~v~~~~~-~~THlV~~~~~RT~K~l~Aia~g~~IVs~~Wl~~~~~~~~~l~e~ 82 (220)
T 3l41_A 8 RVYITFTGYDKK----PSIDNLKKLDMSITSNPS-KCTHLIAPRILRTSKFLCSIPYGPCVVTMDWINSCLKTHEIVDEE 82 (220)
T ss_dssp CEEEEECSCSSC----CCCGGGGGGTEEECSCTT-TCSEEECSSCCCBHHHHHHGGGCCEEECHHHHHHHHHHTSCCCSG
T ss_pred eEEEEEeccCCC----CCcchHhhcceeeccCch-hhhhhhhhhHhhhcceeecCCCCCeEEEhHHHHhhhhhhhccccC
Confidence 445555543322 237899999999988876 5999997543 689999888888 999999999999999999988
Q ss_pred ccccccCChhhHhhhhhhccccCCCccCCCChHHHHHHHhccCCCCCcchhHHHhhhcCCCCCCCCCCCeEEEEccCCCC
Q 003386 402 PKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHSTEP 481 (824)
Q Consensus 402 P~~ll~~S~~t~~~~~~~~D~yGDSy~~dit~~~L~~ll~~~~~se~~~~i~~l~~~~~~~~~~~lF~gc~~YL~g~~~~ 481 (824)
+|. +.. ++... .|| ++ |...+.+ -+. .+..||.|+.|||.....
T Consensus 83 ~y~-l~d-~~~e~-------~~~------~~---l~~~~~r------------ar~-----~~~~LF~G~~f~it~~~~- 126 (220)
T 3l41_A 83 PYL-LND-PEKEL-------ELG------CT---LESALKR------------ARA-----QGPSLLEDYVVYLTSKTV- 126 (220)
T ss_dssp GGB-CCC-HHHHH-------HHT------SC---HHHHHHH------------HHH-----HCSCTTTTSEEEEETTSS-
T ss_pred ccc-cCC-cHHHh-------hcc------cc---HHHHHHH------------HHh-----cCchhhhheeEEEecccc-
Confidence 763 321 11000 011 01 1111100 010 124699999999987420
Q ss_pred CCCchHHHHHHHHHHHHHHHHhcCCEEEccCC----------CceEEEEecCCCcccchhhhHHHHHHHhhhhccCCccE
Q 003386 482 LSPDWEVLLGLALRRLKLEISFHGGKVCNNLA----------NATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLH 551 (824)
Q Consensus 482 ~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~ls----------~vTHVVV~~~~~~~~~~~~Lr~~l~~~~~~~~~~~~~~ 551 (824)
+.+. .+.|+.+|+.+||++....+ +-.+||+..+. +.... ..|.... .....++
T Consensus 127 ~~p~--------~~~l~~iI~~~GG~v~~~p~~~~~~~~~~~~~~~~vis~~~----d~~~~-~~f~~~~---~~~~~~~ 190 (220)
T 3l41_A 127 APEN--------VPAVISIVKSNGGVCSTLNVYNKRLARHLEDGNVVLITCNE----DSHIW-TNFLDNA---SQNKTIF 190 (220)
T ss_dssp CGGG--------HHHHHHHHHHTTCEEEEECSCCHHHHHHHHHCCEEEEECGG----GHHHH-TTTHHHH---TTCTTEE
T ss_pred CCCC--------CceEEEEEecCCcEechhhHHHHHHHHhcccCCEEEEEeCC----cchHH-HHhhccc---cccceEE
Confidence 0111 35788999999999998211 01245554322 12211 1121111 1245789
Q ss_pred EecccHHHHHHHhCCccCCCCC
Q 003386 552 VVRSQWLEDCLAKEQKSEEYEY 573 (824)
Q Consensus 552 IVt~~WLedCi~~g~~l~Ee~Y 573 (824)
||+.+||..||-...+-=++.|
T Consensus 191 i~~~e~ll~~il~q~l~~~~~~ 212 (220)
T 3l41_A 191 LQNYDWLIKTVLRQEIDVNDRI 212 (220)
T ss_dssp EEEHHHHHHHHHHTCCCTTCCB
T ss_pred EechhHHHHHHHHHHcCcchHH
Confidence 9999999999997765554444
No 40
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=99.27 E-value=1.5e-11 Score=117.22 Aligned_cols=99 Identities=22% Similarity=0.383 Sum_probs=75.8
Q ss_pred cccCCcccccCCCCCccCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhHHhHhc---CC-Ce
Q 003386 307 FLQTDVSDIKGETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKR---RG-DV 382 (824)
Q Consensus 307 ~~~~~~s~~~~~s~lF~Gl~FcV~~~~~~~sk~eLeklI~~~GG~vv~n~~~s~Th~Ia~~~~t~K~~~a~~---~~-dI 382 (824)
+...|+.-......+|+||.|||.+. ....++.|..+|..|||+++..++..+||+|+.+. ..+++.+.. .+ .|
T Consensus 26 ~~~~d~~~~~~~~~lF~g~~i~i~G~-~~~~~~~L~~~i~~~Gg~v~~~l~~~vTHvI~~~~-~~~~~~~~~~~~~~~~i 103 (132)
T 1wf6_A 26 LENLDVSAFQAPEDLLDGCRIYLCGF-SGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDY-DDELKQFWNKSAHRPHV 103 (132)
T ss_dssp STTCCGGGCCCCTTTTTTCEEEEESC-CSHHHHHHHHHHHHTTCEEESSCCSSCCEEEESSC-CSHHHHHHHHSCCCCCE
T ss_pred hhhcCcccccccccccCCEEEEEECC-ChHHHHHHHHHHHHCCCEEeCcCCCCCeEEEECCc-hHHHHHHHHhhCCCCeE
Confidence 33444444445678999999999844 44567899999999999999888888999998653 334443322 23 99
Q ss_pred eecchHHHHHhcCccCCCCcccccc
Q 003386 383 IHYSWVLDCCSQKKLLQLQPKYYLH 407 (824)
Q Consensus 383 V~p~WV~DCI~~~~lLp~eP~~ll~ 407 (824)
|+|+||.||++++++||.++|...+
T Consensus 104 V~~~Wv~dsi~~~~ll~e~~Y~~~~ 128 (132)
T 1wf6_A 104 VGAKWLLECFSKGYMLSEEPYIHSG 128 (132)
T ss_dssp EEHHHHHHHHHHSSCCCSGGGBCCC
T ss_pred echHHHHHHHHcCCcCCHhhccCCC
Confidence 9999999999999999999875543
No 41
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=99.25 E-value=8.2e-12 Score=112.29 Aligned_cols=86 Identities=22% Similarity=0.402 Sum_probs=67.3
Q ss_pred CCCCCCCeEEEEccCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC--CceEEEEecCCCcccchhhhHHHHHHHh
Q 003386 464 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA--NATHVVVLSVLGYDVNFNSLTESFTARE 541 (824)
Q Consensus 464 ~~~lF~gc~~YL~g~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~ls--~vTHVVV~~~~~~~~~~~~Lr~~l~~~~ 541 (824)
+..+|.||+|||.++.. .+ ...|+.+|..+||+++..++ .|||||+......+ + +.
T Consensus 9 ~~~lF~g~~~~isg~~~---~~--------~~~L~~~i~~~GG~~~~~~~~~~~THlI~~~~~~~k--~---~~------ 66 (97)
T 2ebw_A 9 SSTIFSGVAIYVNGYTD---PS--------AEELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAK--I---KE------ 66 (97)
T ss_dssp CCCTTTTCEEEECSSCS---SC--------HHHHHHHHHHTTCEECSSCCSSSCCEEECSCCCTTH--H---HH------
T ss_pred CCCCCCCeEEEEeCCCc---cc--------HHHHHHHHHHcCCEEeeecCCCCCEEEEecCCChHH--H---HH------
Confidence 45699999999998742 12 35789999999999988775 59999998653211 1 10
Q ss_pred hhhccCCccEEecccHHHHHHHhCCccCCCCCCCC
Q 003386 542 KHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLK 576 (824)
Q Consensus 542 ~~~~~~~~~~IVt~~WLedCi~~g~~l~Ee~Y~v~ 576 (824)
...++||+++||.+|+++++++|++.|.+-
T Consensus 67 -----~~~~~iV~p~Wl~dci~~~~~l~~~~Y~l~ 96 (97)
T 2ebw_A 67 -----LKGEKVIRPEWIVESIKAGRLLSYIPYQLY 96 (97)
T ss_dssp -----TSSSCCBCTHHHHHHHHHTSCCCSGGGBSC
T ss_pred -----hcCCCEeChHHHHHHHHcCCccCchHcEec
Confidence 126799999999999999999999999763
No 42
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=2.1e-11 Score=115.71 Aligned_cols=90 Identities=16% Similarity=0.275 Sum_probs=71.3
Q ss_pred CCCCCeEEEEccCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhhhh
Q 003386 466 SCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREKHL 544 (824)
Q Consensus 466 ~lF~gc~~YL~g~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~ls-~vTHVVV~~~~~~~~~~~~Lr~~l~~~~~~~ 544 (824)
.+|.||+|||.++. .. .+..|+.+|..+||+++..++ .|||||+....+.+ +. ...
T Consensus 21 ~~f~g~~i~itG~~---~~--------~r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~~~~~~K--~~---~A~------- 77 (129)
T 2d8m_A 21 KILQGVVVVLSGFQ---NP--------FRSELRDKALELGAKYRPDWTRDSTHLICAFANTPK--YS---QVL------- 77 (129)
T ss_dssp TTSTTEEEEEESCC---TT--------HHHHHHHHHHHTTEEEESSCCTTCCEEEESSSSCHH--HH---HHH-------
T ss_pred ccCCCeEEEEeCCC---cH--------HHHHHHHHHHHcCCEEeCCcCCCCeEEEecCCCChH--HH---HHH-------
Confidence 47999999999974 11 246789999999999999998 69999998644221 21 111
Q ss_pred ccCCccEEecccHHHHHHHhCCccCCCCCCCCCCCC
Q 003386 545 LWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPTGM 580 (824)
Q Consensus 545 ~~~~~~~IVt~~WLedCi~~g~~l~Ee~Y~v~~~~~ 580 (824)
...++||+++||.+|++.+++++|+.|.+.....
T Consensus 78 --~~gi~IV~~~Wl~d~~~~~~~l~e~~Y~l~~~~~ 111 (129)
T 2d8m_A 78 --GLGGRIVRKEWVLDCHRMRRRLPSQRYLMAGPGS 111 (129)
T ss_dssp --HHTCEEEETHHHHHHHHTTSCCCGGGGBCSSSSC
T ss_pred --HCCCcEecHHHHHHHHHhCCcCChHhcccCCCCc
Confidence 1358999999999999999999999999877654
No 43
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=99.17 E-value=4.3e-11 Score=129.20 Aligned_cols=148 Identities=14% Similarity=0.217 Sum_probs=108.6
Q ss_pred HHHHHcCCE-EEec--------CC-CCceEEEEecCCChhHHhHhcCC-CeeecchHHHHHhcCccCCCCccccccCChh
Q 003386 343 KMVVENGGT-FSMN--------LN-NSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQKKLLQLQPKYYLHLSDS 411 (824)
Q Consensus 343 klI~~~GG~-vv~n--------~~-~s~Th~Ia~~~~t~K~~~a~~~~-dIV~p~WV~DCI~~~~lLp~eP~~ll~~S~~ 411 (824)
+.|++++++ +++- .. +..++.|+.+-.+..|..+...+ +||.|+||.+|++.++.||..|+.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~~~F~g~~f~~l~~~~~~iv~p~~v~~c~~~~~~lp~~~~P~y----- 102 (298)
T 3olc_X 28 ESIKEFQSEEYLQIITEEEALKIKENDRSLYICDPFSGVVFDHLKKLGCRIVGPQVVIFCMHHQRCVPRAEHPVY----- 102 (298)
T ss_dssp HHHHHHSCGGGEEEEEHHHHTTCCSCCSCEEECSSSCSHHHHHHHHHTCEEECHHHHHHHHHTTCCCCCCSSCBC-----
T ss_pred HHHHHhcCCcccEEecHHHHhhCCCCCCeEEEecCCCCHHHHHHHHCCCCEECHHHHHHHHHhCCcCCCCCCccc-----
Confidence 456777777 3321 11 12355666777888899998877 99999999999999999987653211
Q ss_pred hHhhhhhhccccCCCccCCCChHHHHHHHhccCCCCCcchhHHHhhhcCCCCCCCCCCCeEEEEccCCCCCCCchHHHHH
Q 003386 412 SKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHSTEPLSPDWEVLLG 491 (824)
Q Consensus 412 t~~~~~~~~D~yGDSy~~dit~~~L~~ll~~~~~se~~~~i~~l~~~~~~~~~~~lF~gc~~YL~g~~~~~~~d~~~i~~ 491 (824)
..+|.|++|++.|..+
T Consensus 103 -----------------------------------------------------~~~l~g~~~~~tG~~~----------- 118 (298)
T 3olc_X 103 -----------------------------------------------------NMVMSDVTISCTSLEK----------- 118 (298)
T ss_dssp -----------------------------------------------------CCTTTTCEEEEESCCH-----------
T ss_pred -----------------------------------------------------ccccCCeEEEeCCCcH-----------
Confidence 1368999999998641
Q ss_pred HHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhhhhccCCccEEecccHHHHHHHhCCccCC
Q 003386 492 LALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEE 570 (824)
Q Consensus 492 ~~l~~L~~~I~~~GG~V~~~ls-~vTHVVV~~~~~~~~~~~~Lr~~l~~~~~~~~~~~~~~IVt~~WLedCi~~g~~l~E 570 (824)
.....+..+|..+||+++.+++ ++||||+....+.+ + +... ...+.||+++||.+|+..++.++.
T Consensus 119 ~~r~~l~~~i~~~GG~v~~~~t~~tTHLI~~~~~t~K--y---~~A~---------~~gi~IV~~~Wl~~c~~~~~~~~~ 184 (298)
T 3olc_X 119 EKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKK--Y---LVAA---------NLKKPILLPSWIKTLWEKSQEKKI 184 (298)
T ss_dssp HHHHHHHHHHHHTTCEECSSCCTTCCEEEESSSCSHH--H---HHHH---------HTTCCEECHHHHHHHHHHHHTTCC
T ss_pred HhHHHHHHHHHHCCCEEecCcCCCeeEEEEeCCCChH--H---HHHH---------HCCCeEeeHHHHHHHHHcCCcCCc
Confidence 2356889999999999999998 69999998654211 1 1111 135799999999999999998765
Q ss_pred CCC
Q 003386 571 YEY 573 (824)
Q Consensus 571 e~Y 573 (824)
..|
T Consensus 185 ~~~ 187 (298)
T 3olc_X 185 TRY 187 (298)
T ss_dssp SSG
T ss_pred ccc
Confidence 544
No 44
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=99.15 E-value=6.8e-11 Score=108.44 Aligned_cols=93 Identities=14% Similarity=0.155 Sum_probs=68.7
Q ss_pred CCCCCCCeEEEEccCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhh
Q 003386 464 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREK 542 (824)
Q Consensus 464 ~~~lF~gc~~YL~g~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~ls-~vTHVVV~~~~~~~~~~~~Lr~~l~~~~~ 542 (824)
...+|.||+|||.|+.+ . ....|+.+|..+||+++..++ .|||||+....+. .-..++...
T Consensus 12 ~~~~l~g~~i~isg~~~---~--------~r~~l~~li~~~Gg~v~~~~s~~~THlI~~~~~~~--~~~K~~~A~----- 73 (107)
T 3l3e_A 12 APKPLHKVVVCVSKKLS---K--------KQSELNGIAASLGADYRRSFDETVTHFIYQGRPND--TNREYKSVK----- 73 (107)
T ss_dssp --CTTTTCEEEECGGGG---G--------GHHHHHHHHHHTTCEEESSCCTTCCEEECCCCTTC--CCHHHHHHH-----
T ss_pred ccCCCCCeEEEEeCCCh---H--------hHHHHHHHHHHcCCEEeccccCCceEEEecCCCCC--CCHHHHHHH-----
Confidence 34589999999999742 1 245788999999999999998 6999999531110 011112111
Q ss_pred hhccCCccEEecccHHHHHHHhCCccCCCCCCCCCC
Q 003386 543 HLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPT 578 (824)
Q Consensus 543 ~~~~~~~~~IVt~~WLedCi~~g~~l~Ee~Y~v~~~ 578 (824)
...++||+++||.+|++.++++||++|.+...
T Consensus 74 ----~~gi~IV~~~Wl~~c~~~~~~l~e~~Y~~~~~ 105 (107)
T 3l3e_A 74 ----ERGVHIVSEHWLLDCAQECKHLPESLYPHTYN 105 (107)
T ss_dssp ----HTTCEEECHHHHHHHHHHTSCCCGGGCCTTCC
T ss_pred ----HCCCeEecHHHHHHHHHhCCCCchhhCCCCCC
Confidence 24689999999999999999999999987654
No 45
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.1e-10 Score=106.07 Aligned_cols=80 Identities=20% Similarity=0.171 Sum_probs=62.8
Q ss_pred CCCCCCCeEEEEccCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccC-----------C-CceEEEEecCCCcccchh
Q 003386 464 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNL-----------A-NATHVVVLSVLGYDVNFN 531 (824)
Q Consensus 464 ~~~lF~gc~~YL~g~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~l-----------s-~vTHVVV~~~~~~~~~~~ 531 (824)
...||+||+|||.... .+..|+.+|+.+||+|+.+. + .+||+|++.+. ..
T Consensus 9 ~~~LF~g~~F~i~~e~-------------p~~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~drp~-----~~ 70 (100)
T 2ep8_A 9 HKKLFEGLKFFLNREV-------------PREALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVDRPG-----QQ 70 (100)
T ss_dssp SCCTTSSCEEECCSSS-------------CHHHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEECSCTT-----TS
T ss_pred hHHHcCCcEEEEecCC-------------CHHHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEecccc-----hh
Confidence 4679999999998743 14578889999999999762 3 59999998643 11
Q ss_pred hhHHHHHHHhhhhccCCccEEecccHHHHHHHhCCccCCCCCC
Q 003386 532 SLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYS 574 (824)
Q Consensus 532 ~Lr~~l~~~~~~~~~~~~~~IVt~~WLedCi~~g~~l~Ee~Y~ 574 (824)
+ .....++|++.||.|||+++++||+++|.
T Consensus 71 ---~----------~~~~r~~VqPqWV~Dcin~~~lLp~~~Y~ 100 (100)
T 2ep8_A 71 ---T----------SVIGRCYVQPQWVFDSVNARLLLPVAEYF 100 (100)
T ss_dssp ---C----------CBTTBEEECTHHHHHHHHHTSCCCTTTCC
T ss_pred ---h----------hcCCCeEEcchHHHHHHhcCCcCChhhcC
Confidence 0 01335899999999999999999999994
No 46
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=99.01 E-value=5.6e-10 Score=102.70 Aligned_cols=85 Identities=21% Similarity=0.343 Sum_probs=72.1
Q ss_pred CCccCeEEEEEcCC-CC--CCHHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhHHhHhcCC-CeeecchHHHHHhcC
Q 003386 320 SIFSDMVFYFVNVP-PA--YSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQK 395 (824)
Q Consensus 320 ~lF~Gl~FcV~~~~-~~--~sk~eLeklI~~~GG~vv~n~~~s~Th~Ia~~~~t~K~~~a~~~~-dIV~p~WV~DCI~~~ 395 (824)
++|+|+++||.... .. ...+.|..++..+||+++..++..+||+|+.+..+.+++.+.+++ +||++.||.+|++++
T Consensus 6 p~f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~~~l~~~vTHvV~~~~~~~~~~~A~~~~i~iV~~~Wv~~C~~~~ 85 (107)
T 3pa6_A 6 PILKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKTFNKQVTHVIFKDGYQSTWDKAQKRGVKLVSVLWVEKCRTAG 85 (107)
T ss_dssp CTTTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEECSSCCTTCCEEEEESCCHHHHHHHHHHTCEEECHHHHHHHHHHT
T ss_pred cccCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEecccCCCccEEEEeCCCChHHHHHhcCCCEEECHHHHHHHHHhC
Confidence 59999999994321 11 234789999999999999999989999999877777888888887 999999999999999
Q ss_pred ccCCCCccc
Q 003386 396 KLLQLQPKY 404 (824)
Q Consensus 396 ~lLp~eP~~ 404 (824)
++++-.+|.
T Consensus 86 ~~vdE~~Y~ 94 (107)
T 3pa6_A 86 AHIDESLFP 94 (107)
T ss_dssp SCCCGGGSB
T ss_pred ccCChhccc
Confidence 999988763
No 47
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=98.99 E-value=3.6e-10 Score=100.04 Aligned_cols=72 Identities=25% Similarity=0.391 Sum_probs=57.8
Q ss_pred CCCCCCeEEEEccCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC--CceEEEEecCCCcccchhhhHHHHHHHhh
Q 003386 465 WSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA--NATHVVVLSVLGYDVNFNSLTESFTAREK 542 (824)
Q Consensus 465 ~~lF~gc~~YL~g~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~ls--~vTHVVV~~~~~~~~~~~~Lr~~l~~~~~ 542 (824)
..||.||+|||++.. . + ...|.++|.+|||.|+.+.+ .+||||++...
T Consensus 14 pdiFsg~~~~l~~~v--~--~--------~~~l~RyiiAfgG~v~~~~~~~~vTHvI~~~~~------------------ 63 (88)
T 3pc7_A 14 LDIFTGVRLYLPPST--P--D--------FSRLRRYFVAFDGDLVQEFDMTSATHVLGSRDK------------------ 63 (88)
T ss_dssp CCCSTTCEECCCTTS--T--T--------HHHHHHHHHHTTCEECCGGGGGGCSEEESCCTT------------------
T ss_pred ChhhcCeEEEccCCc--C--c--------hhhheeeeeecCCEEecccCCCcCeEEecCCCc------------------
Confidence 469999999998753 2 1 24788999999999988655 69999975421
Q ss_pred hhccCCccEEecccHHHHHHHhCCccCC
Q 003386 543 HLLWNKKLHVVRSQWLEDCLAKEQKSEE 570 (824)
Q Consensus 543 ~~~~~~~~~IVt~~WLedCi~~g~~l~E 570 (824)
....++|+++||++||+++++|++
T Consensus 64 ----~~~~~~V~p~WI~dcI~k~~Ll~~ 87 (88)
T 3pc7_A 64 ----NPAAQQVSPEWIWACIRKRRLVAP 87 (88)
T ss_dssp ----CTTSEEECHHHHHHHHHHTSCCSC
T ss_pred ----CCCCcEEchHHHHHHHhCCcccCC
Confidence 345689999999999999999986
No 48
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=98.96 E-value=2.9e-10 Score=100.57 Aligned_cols=73 Identities=19% Similarity=0.452 Sum_probs=57.7
Q ss_pred CCCCccCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCCC-CceEEEEecCCChhHHhHhcCC-CeeecchHHHHHhcC
Q 003386 318 ETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNN-SVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQK 395 (824)
Q Consensus 318 ~s~lF~Gl~FcV~~~~~~~sk~eLeklI~~~GG~vv~n~~~-s~Th~Ia~~~~t~K~~~a~~~~-dIV~p~WV~DCI~~~ 395 (824)
-.++|+|+.|||-..... ...|++.|.++||+++.+.+. .+||+|+... ...+ .+|+|+||+|||+++
T Consensus 13 LpdiFsg~~~~l~~~v~~--~~~l~RyiiAfgG~v~~~~~~~~vTHvI~~~~--------~~~~~~~V~p~WI~dcI~k~ 82 (88)
T 3pc7_A 13 LLDIFTGVRLYLPPSTPD--FSRLRRYFVAFDGDLVQEFDMTSATHVLGSRD--------KNPAAQQVSPEWIWACIRKR 82 (88)
T ss_dssp CCCCSTTCEECCCTTSTT--HHHHHHHHHHTTCEECCGGGGGGCSEEESCCT--------TCTTSEEECHHHHHHHHHHT
T ss_pred CChhhcCeEEEccCCcCc--hhhheeeeeecCCEEecccCCCcCeEEecCCC--------cCCCCcEEchHHHHHHHhCC
Confidence 357999999998654322 369999999999999887663 7999995432 1223 899999999999999
Q ss_pred ccCCC
Q 003386 396 KLLQL 400 (824)
Q Consensus 396 ~lLp~ 400 (824)
+|||.
T Consensus 83 ~Ll~~ 87 (88)
T 3pc7_A 83 RLVAP 87 (88)
T ss_dssp SCCSC
T ss_pred cccCC
Confidence 99985
No 49
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=98.91 E-value=2.7e-09 Score=100.60 Aligned_cols=99 Identities=17% Similarity=0.068 Sum_probs=74.2
Q ss_pred CCCCCCeEEEEccCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhhh
Q 003386 465 WSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREKH 543 (824)
Q Consensus 465 ~~lF~gc~~YL~g~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~ls-~vTHVVV~~~~~~~~~~~~Lr~~l~~~~~~ 543 (824)
...|.+|++||.... |...+++.|.++++.+||+|.+.++ +|||||+.+.+ ...+..++.....+
T Consensus 8 ~~~F~~v~iyive~k---------mG~sRr~fL~~la~~kGf~v~~~~S~~VTHVV~E~~s-----~~~~~~~L~~~~~~ 73 (133)
T 2dun_A 8 STRFPGVAIYLVEPR---------MGRSRRAFLTGLARSKGFRVLDACSSEATHVVMEETS-----AEEAVSWQERRMAA 73 (133)
T ss_dssp SCSEEEEEEEECHHH---------HCSHHHHHHHHHHHHHTEEECSSCCTTCCEEEESSCC-----HHHHHHHHHHHHHH
T ss_pred ccccCccEEEEecCC---------cCHHHHHHHHHHHHhcCCEeccccCCCceEEEecCCC-----HHHHHHHHHHhhcc
Confidence 457999999998752 2235678999999999999999999 59999995432 44555565222222
Q ss_pred hc-cCCccEEecccHHHHHHHhCCccCCCCCCCCC
Q 003386 544 LL-WNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKP 577 (824)
Q Consensus 544 ~~-~~~~~~IVt~~WLedCi~~g~~l~Ee~Y~v~~ 577 (824)
+. ....+++|...|+.+|+++|++|+++.|.+-.
T Consensus 74 l~~~~~~~~lLdisWltecm~~g~pV~~e~~~~l~ 108 (133)
T 2dun_A 74 APPGCTPPALLDISWLTESLGAGQPVPVECRHRLE 108 (133)
T ss_dssp SCTTCCCCEEEEHHHHHHHHHHTSCCCCCTTTSCC
T ss_pred cCcCCCCcEEeccHHHHHHHhcCCcCCcccceEee
Confidence 21 22458999999999999999999997765433
No 50
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=98.88 E-value=3e-09 Score=117.92 Aligned_cols=86 Identities=20% Similarity=0.261 Sum_probs=76.5
Q ss_pred CCCccCeEEEEEcCCC---CCCHHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhHHhHhcC-C-CeeecchHHHHHh
Q 003386 319 TSIFSDMVFYFVNVPP---AYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRR-G-DVIHYSWVLDCCS 393 (824)
Q Consensus 319 s~lF~Gl~FcV~~~~~---~~sk~eLeklI~~~GG~vv~n~~~s~Th~Ia~~~~t~K~~~a~~~-~-dIV~p~WV~DCI~ 393 (824)
+.+|.|++||+++... ...+.++.++|..+||+++.+.+..+||+|++...+.|++.|.+. + +||++.||.+|+.
T Consensus 280 ~~~L~G~~ivfSG~~~~~~~~~~~~l~~l~~~lGa~v~~~vs~~vTHLVa~~~~t~K~~~A~~~~~I~IV~~~Wl~~c~~ 359 (372)
T 3ef0_A 280 QKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKLNWLTESLS 359 (372)
T ss_dssp TTTSTTCEEEEESSSCTTSCTTTSHHHHHHHHTTCEEESSSSSCCSEEEECSCCCHHHHHHHHSSSCCEEEHHHHHHHHH
T ss_pred hhhcCCcEEEEecccCCCcchhHHHHHHHHHHcCCEEeCcCCCCceEEEEcCCCchHHHHHHhcCCCEEEcHHHHHHHHH
Confidence 5799999999987643 234689999999999999999998999999998889999999888 5 9999999999999
Q ss_pred cCccCCCCccc
Q 003386 394 QKKLLQLQPKY 404 (824)
Q Consensus 394 ~~~lLp~eP~~ 404 (824)
+++.+|..+|.
T Consensus 360 ~~~~vdE~~Y~ 370 (372)
T 3ef0_A 360 QWKRLPESDYL 370 (372)
T ss_dssp TTSCCCGGGGB
T ss_pred hCCcCChhhce
Confidence 99999988763
No 51
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=98.83 E-value=3e-09 Score=119.71 Aligned_cols=87 Identities=21% Similarity=0.286 Sum_probs=77.1
Q ss_pred CCCCccCeEEEEEcCCC---CCCHHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhHHhHhcCC--CeeecchHHHHH
Q 003386 318 ETSIFSDMVFYFVNVPP---AYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG--DVIHYSWVLDCC 392 (824)
Q Consensus 318 ~s~lF~Gl~FcV~~~~~---~~sk~eLeklI~~~GG~vv~n~~~s~Th~Ia~~~~t~K~~~a~~~~--dIV~p~WV~DCI 392 (824)
.+.+|.|++||+.+... ..++.+|..+|..+||++..+.+..+||+|+....|.||..|.+++ +||+++||.+|+
T Consensus 349 k~~~L~G~~IvfSG~~p~~~~~~r~~l~~~~~~lGa~~~~~vs~~vTHLVa~~~~t~K~~~A~~~g~IkIVs~~WL~dcl 428 (442)
T 3ef1_A 349 KQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKLNWLTESL 428 (442)
T ss_dssp HHTTSTTCEEEEESSSCTTSCSTTSHHHHHHHTTTCEECSSSSSCCSEEEECSCCCHHHHHHHHHSSSEEEEHHHHHHHH
T ss_pred hhcccCCcEEEEecccCCCCCccHHHHHHHHHHcCCEEeCCCCCCceEEEeCCCCCHHHHHHHhcCCCEEEeHHHHHHHH
Confidence 46799999999987542 2367899999999999999999989999999988999999999874 899999999999
Q ss_pred hcCccCCCCccc
Q 003386 393 SQKKLLQLQPKY 404 (824)
Q Consensus 393 ~~~~lLp~eP~~ 404 (824)
.+++.++..+|-
T Consensus 429 ~~~krldE~~Yl 440 (442)
T 3ef1_A 429 SQWKRLPESDYL 440 (442)
T ss_dssp HHTSCCCGGGTB
T ss_pred HcCCcCChhccc
Confidence 999999988763
No 52
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=98.76 E-value=3.6e-09 Score=107.60 Aligned_cols=79 Identities=23% Similarity=0.331 Sum_probs=60.2
Q ss_pred CCCCccCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhHHhHhcCC-CeeecchHHHHHhcCc
Q 003386 318 ETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQKK 396 (824)
Q Consensus 318 ~s~lF~Gl~FcV~~~~~~~sk~eLeklI~~~GG~vv~n~~~s~Th~Ia~~~~t~K~~~a~~~~-dIV~p~WV~DCI~~~~ 396 (824)
...+|+|+.|++++.....++++|+.+|..+||+++.++.. +++ |++.... ....+ +||+|+||+|||+++.
T Consensus 116 ~~~LF~g~~~~~v~~~~~~~~~~L~~lI~~~GG~v~~~~~~-~~i-iI~~~~~-----~~~~~~~~V~p~Wi~DsI~~~~ 188 (199)
T 3u3z_A 116 RGTLFADQPVMFVSPASSPPVAKLCELVHLCGGRVSQVPRQ-ASI-VIGPYSG-----KKKATVKYLSEKWVLDSITQHK 188 (199)
T ss_dssp CCCTTTTSCCEEECTTCSSCHHHHHHHHHHTTCCBCSSGGG-CSE-EESCCCS-----CCCTTCEEECHHHHHHHHHHTS
T ss_pred cchhhCCCeEEEECCCCCCCHHHHHHHHHHcCCEEeccCCC-CEE-EEeCCch-----hccCCCcEEChhHHHHHHHcCC
Confidence 35799999644444444567899999999999999998753 444 4444322 22344 9999999999999999
Q ss_pred cCCCCcc
Q 003386 397 LLQLQPK 403 (824)
Q Consensus 397 lLp~eP~ 403 (824)
++|+++|
T Consensus 189 llp~~~Y 195 (199)
T 3u3z_A 189 VCAPENY 195 (199)
T ss_dssp CCCGGGG
T ss_pred cCChHhc
Confidence 9999986
No 53
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=98.69 E-value=2e-08 Score=102.12 Aligned_cols=87 Identities=20% Similarity=0.235 Sum_probs=64.7
Q ss_pred CCCCccCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCCCC----ceE-EEEecCCC----hhHHhH-hcCC-Ceeecc
Q 003386 318 ETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNS----VTH-CVAADNKG----LKYEAA-KRRG-DVIHYS 386 (824)
Q Consensus 318 ~s~lF~Gl~FcV~~~~~~~sk~eLeklI~~~GG~vv~n~~~s----~Th-~Ia~~~~t----~K~~~a-~~~~-dIV~p~ 386 (824)
...+|+|+.||+.+......+++|+.+|..+||+++.++... .+| +|+.+... .++.++ ...+ +||+++
T Consensus 112 ~~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~ivi~~~~~~~~~~~~~~~a~~~~~~iV~~~ 191 (214)
T 1t15_A 112 DRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTRE 191 (214)
T ss_dssp TSCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEECCSGGGCCCSTTCCEEEEECGGGCSSCGGGGSSTTTCSSCEEEHH
T ss_pred CCcccCCCEEEEEecCCCCCHHHHHHHHHHCCCEEecCccccccCCCCccEEEECCCcccchhhHHHHHHhcCCcEEecc
Confidence 457999999999765445679999999999999999876421 234 44554322 244432 3344 999999
Q ss_pred hHHHHHhcCccCCCCccc
Q 003386 387 WVLDCCSQKKLLQLQPKY 404 (824)
Q Consensus 387 WV~DCI~~~~lLp~eP~~ 404 (824)
||+|||.++.++|+++|.
T Consensus 192 Wi~dsi~~~~~l~~~~Y~ 209 (214)
T 1t15_A 192 WVLDSVALYQCQELDTYL 209 (214)
T ss_dssp HHHHHHHHTSCCCSGGGB
T ss_pred HHHHhHhhcCcCCCccee
Confidence 999999999999999873
No 54
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=98.68 E-value=6.3e-09 Score=95.51 Aligned_cols=89 Identities=15% Similarity=0.273 Sum_probs=65.0
Q ss_pred CCCCccCeEEEEEcCCCCCCH-HHHHHHHHHcCCEEEecCCCCceEEEEecCCChh--HHhHhc-----CCCeeecchHH
Q 003386 318 ETSIFSDMVFYFVNVPPAYSL-DSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLK--YEAAKR-----RGDVIHYSWVL 389 (824)
Q Consensus 318 ~s~lF~Gl~FcV~~~~~~~sk-~eLeklI~~~GG~vv~n~~~s~Th~Ia~~~~t~K--~~~a~~-----~~dIV~p~WV~ 389 (824)
...+|+|+.||++.......+ +-+.++++++||+++..+++.+||+|+.+..+.+ .+.+.. ...||+++||.
T Consensus 8 ~~~~F~g~~v~~~p~~~~~~r~~i~~~~a~~~Ga~v~~~~~~~vTHVVvd~~~s~~~~l~~l~~~~l~~~~~iV~~~Wv~ 87 (106)
T 2jw5_A 8 AEEWLSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRLPQLPPGAQLVKSAWLS 87 (106)
T ss_dssp GGGCGGGSCCCBCTTTCCSSSTTHHHHHHHHTTCCCCSTTCTTCCEEEECSSSCHHHHHHHTTCSSCCSSCEEEEHHHHH
T ss_pred CcCEeCCeEEEEEecCCchHHHHHHHHHHHHcCCEEeeccCCCccEEEEcCCCCHHHHHHHHhhcccCCCcEEecCchHH
Confidence 467999999998754433333 4455689999999999988889999985333322 111111 12799999999
Q ss_pred HHHhcCccCCCCccccc
Q 003386 390 DCCSQKKLLQLQPKYYL 406 (824)
Q Consensus 390 DCI~~~~lLp~eP~~ll 406 (824)
||+.++++|+.++|+++
T Consensus 88 dci~~~~llde~~y~~~ 104 (106)
T 2jw5_A 88 LCLQERRLVDVAGFSIF 104 (106)
T ss_dssp HHHHTCSCCCGGGTBCS
T ss_pred HHHhcCcccCccccccc
Confidence 99999999999987543
No 55
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=98.66 E-value=2.1e-08 Score=111.20 Aligned_cols=91 Identities=16% Similarity=0.252 Sum_probs=68.6
Q ss_pred CCCCCCeEEEEccCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhhh
Q 003386 465 WSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREKH 543 (824)
Q Consensus 465 ~~lF~gc~~YL~g~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~ls-~vTHVVV~~~~~~~~~~~~Lr~~l~~~~~~ 543 (824)
..+|.||+|+|.|+.+..... ....+..++..+||+++.+++ .|||||+....+.+ ++...
T Consensus 280 ~~~L~G~~ivfSG~~~~~~~~-------~~~~l~~l~~~lGa~v~~~vs~~vTHLVa~~~~t~K-----~~~A~------ 341 (372)
T 3ef0_A 280 QKVLKGCRLLFSGVIPLGVDV-------LSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEK-----VKKAV------ 341 (372)
T ss_dssp TTTSTTCEEEEESSSCTTSCT-------TTSHHHHHHHHTTCEEESSSSSCCSEEEECSCCCHH-----HHHHH------
T ss_pred hhhcCCcEEEEecccCCCcch-------hHHHHHHHHHHcCCEEeCcCCCCceEEEEcCCCchH-----HHHHH------
Confidence 468999999999974321110 123678899999999999999 69999998654221 12111
Q ss_pred hccCCccEEecccHHHHHHHhCCccCCCCCCC
Q 003386 544 LLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSL 575 (824)
Q Consensus 544 ~~~~~~~~IVt~~WLedCi~~g~~l~Ee~Y~v 575 (824)
....++||+++||++|+..++++||+.|.+
T Consensus 342 --~~~~I~IV~~~Wl~~c~~~~~~vdE~~Y~l 371 (372)
T 3ef0_A 342 --SMGNIKVVKLNWLTESLSQWKRLPESDYLL 371 (372)
T ss_dssp --HSSSCCEEEHHHHHHHHHTTSCCCGGGGBC
T ss_pred --hcCCCEEEcHHHHHHHHHhCCcCChhhcee
Confidence 123689999999999999999999999976
No 56
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=98.62 E-value=3.7e-08 Score=100.42 Aligned_cols=82 Identities=23% Similarity=0.373 Sum_probs=62.1
Q ss_pred CCCccCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEe-cCC----------------------CCceEEEEecCCChhH--
Q 003386 319 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSM-NLN----------------------NSVTHCVAADNKGLKY-- 373 (824)
Q Consensus 319 s~lF~Gl~FcV~~~~~~~sk~eLeklI~~~GG~vv~-n~~----------------------~s~Th~Ia~~~~t~K~-- 373 (824)
..+|+|+.||+++......+++|+.+|..+||+++. .+. ..+||.|+.... .++
T Consensus 102 ~~lF~g~~~~l~~~~~~~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~~t~~iv~~~~-~~~~~ 180 (210)
T 2nte_A 102 PKLFDGCYFYLWGTFKHHPKDNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHARPDSDQRFCTQYIIYEDL-CNYHP 180 (210)
T ss_dssp CCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEEESSCCCGGGCGGGSSCCCCTTSCTTCGGGTCCEEEEECSC-SSCCC
T ss_pred ccccCceEEEEeccCCCCCHHHHHHHHHHCCCEEEecCCCCccccccccceeeeccCCCcccccceEEEEeccc-cccCH
Confidence 579999999998654556799999999999999985 221 235888876542 222
Q ss_pred HhHhcCC-CeeecchHHHHHhcCccCCCC
Q 003386 374 EAAKRRG-DVIHYSWVLDCCSQKKLLQLQ 401 (824)
Q Consensus 374 ~~a~~~~-dIV~p~WV~DCI~~~~lLp~e 401 (824)
..+...+ ++|+++||+|||++++|||++
T Consensus 181 ~~~~~~~v~~V~~~Wl~dcI~~~~llp~~ 209 (210)
T 2nte_A 181 ERVRQGKVWKAPSSWFIDCVMSFELLPLD 209 (210)
T ss_dssp SCSEETTEEEEEHHHHHHHHHHTSCCCSC
T ss_pred HHHhccCcccccHHHHHHHHHhCeeccCC
Confidence 1122344 899999999999999999986
No 57
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=98.58 E-value=4.1e-08 Score=110.56 Aligned_cols=90 Identities=18% Similarity=0.296 Sum_probs=67.6
Q ss_pred CCCCCeEEEEccCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhhhh
Q 003386 466 SCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREKHL 544 (824)
Q Consensus 466 ~lF~gc~~YL~g~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~ls-~vTHVVV~~~~~~~~~~~~Lr~~l~~~~~~~ 544 (824)
.+|.||+|+|.|+-+... + .....+..++..+||+++..++ .|||||+....+.+ + +...
T Consensus 351 ~~L~G~~IvfSG~~p~~~-~------~~r~~l~~~~~~lGa~~~~~vs~~vTHLVa~~~~t~K--~---~~A~------- 411 (442)
T 3ef1_A 351 KVLKGCRLLFSGVIPLGV-D------VLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEK--V---KKAV------- 411 (442)
T ss_dssp TTSTTCEEEEESSSCTTS-C------STTSHHHHHHHTTTCEECSSSSSCCSEEEECSCCCHH--H---HHHH-------
T ss_pred cccCCcEEEEecccCCCC-C------ccHHHHHHHHHHcCCEEeCCCCCCceEEEeCCCCCHH--H---HHHH-------
Confidence 479999999999743210 0 0123678899999999999998 69999998654221 1 1111
Q ss_pred ccCCccEEecccHHHHHHHhCCccCCCCCCC
Q 003386 545 LWNKKLHVVRSQWLEDCLAKEQKSEEYEYSL 575 (824)
Q Consensus 545 ~~~~~~~IVt~~WLedCi~~g~~l~Ee~Y~v 575 (824)
..+.++||+++||++|+..++++||..|.+
T Consensus 412 -~~g~IkIVs~~WL~dcl~~~krldE~~YlL 441 (442)
T 3ef1_A 412 -SMGNIKVVKLNWLTESLSQWKRLPESDYLL 441 (442)
T ss_dssp -HHSSSEEEEHHHHHHHHHHTSCCCGGGTBC
T ss_pred -hcCCCEEEeHHHHHHHHHcCCcCChhcccc
Confidence 113689999999999999999999999976
No 58
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=98.57 E-value=7.6e-08 Score=99.14 Aligned_cols=84 Identities=17% Similarity=0.229 Sum_probs=58.9
Q ss_pred CCccCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCCC-----CceEEEEecC----CChhHHhHh-cCC-CeeecchH
Q 003386 320 SIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNN-----SVTHCVAADN----KGLKYEAAK-RRG-DVIHYSWV 388 (824)
Q Consensus 320 ~lF~Gl~FcV~~~~~~~sk~eLeklI~~~GG~vv~n~~~-----s~Th~Ia~~~----~t~K~~~a~-~~~-dIV~p~WV 388 (824)
.+|.|+.||+.+......+++|+.+|..+||+++.++.. .++|+|+... ...+++.+. ..+ +||++.||
T Consensus 116 ~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~~vvv~~~~~~~~~~~~~l~~~~~i~iVs~~Wl 195 (229)
T 1l0b_A 116 KLFEGLQIYCCEPFTNMPKDELERMLQLCGASVVKELPLLTRDTGAHPIVLVQPSAWTEDNDCPDIGQLCKGRLVMWDWV 195 (229)
T ss_dssp -CCTTCEEEECSCCSSSCHHHHHHHHHHTTCEEECSSSCGGGCCSSCCEEEEC-------------------CEEETHHH
T ss_pred hhhcCceEEEEecCCCCCHHHHHHHHHHCCCEEeCCcccccccCCCceEEEEcCCccchhhhHHHHHHHcCCeEeehhHH
Confidence 699999999976544567899999999999999988753 2466554432 234555443 344 99999999
Q ss_pred HHHHhcCccCCCCcc
Q 003386 389 LDCCSQKKLLQLQPK 403 (824)
Q Consensus 389 ~DCI~~~~lLp~eP~ 403 (824)
+|||.+++++|+++|
T Consensus 196 ldsI~~~~~~~~~~Y 210 (229)
T 1l0b_A 196 LDSISVYRCRDLDAY 210 (229)
T ss_dssp HHHHHTTSCCCGGGG
T ss_pred HHHHhcCCcCCccce
Confidence 999999999998876
No 59
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=98.53 E-value=1.3e-07 Score=84.55 Aligned_cols=76 Identities=12% Similarity=0.174 Sum_probs=68.2
Q ss_pred CCCCccCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhHHhHhcCC-CeeecchHHHHHhc
Q 003386 318 ETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQ 394 (824)
Q Consensus 318 ~s~lF~Gl~FcV~~~~~~~sk~eLeklI~~~GG~vv~n~~~s~Th~Ia~~~~t~K~~~a~~~~-dIV~p~WV~DCI~~ 394 (824)
....|.|+.||+++.... +|++++.+|.++||++..+.+..++|+|+.+..+-|+..|...+ +||+.+|+++++..
T Consensus 4 ~~~~l~G~~~v~TG~l~~-~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~gsK~~kA~~lgI~Ii~E~~f~~~l~~ 80 (92)
T 1l7b_A 4 GGEALKGLTFVITGELSR-PREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLTEEELYRLLEA 80 (92)
T ss_dssp CCCSSTTCEEECSTTTTS-CHHHHHHHHHHTTCEEESCCSSSCCCBEECSSSSTTHHHHHCSSSCCEEHHHHHHHHHH
T ss_pred CCCCcCCcEEEEecCCCC-CHHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCChHHHHHHHcCCcEEeHHHHHHHHHh
Confidence 345799999999876666 99999999999999999999888899999888889999999888 99999999999964
No 60
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=1.9e-07 Score=87.26 Aligned_cols=91 Identities=22% Similarity=0.342 Sum_probs=69.1
Q ss_pred CCCCccCeEEEEEcCCC-CCCHHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhHHhHhc--------CCCeeecchH
Q 003386 318 ETSIFSDMVFYFVNVPP-AYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKR--------RGDVIHYSWV 388 (824)
Q Consensus 318 ~s~lF~Gl~FcV~~~~~-~~sk~eLeklI~~~GG~vv~n~~~s~Th~Ia~~~~t~K~~~a~~--------~~dIV~p~WV 388 (824)
...+|.|+++|++...- ...++-+.++++.+||+++..+.+.+||+|+.+.....+....+ ...||+.+||
T Consensus 17 p~~~F~g~~iy~v~~~~g~~R~~~l~~l~r~~G~~V~~~ls~~VTHVVve~~~~~e~~~~l~~~~l~~~~~~~lv~i~Wl 96 (120)
T 2coe_A 17 QDIKFQDLVVFILEKKMGTTRRALLMELARRKGFRVENELSDSVTHIVAENNSGSDVLEWLQAQKVQVSSQPELLDVSWL 96 (120)
T ss_dssp SCCSCTTCEEEEECTTTCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEESSCCHHHHHHHHHHCCCCCSSCCEEEEHHHH
T ss_pred cccccCCeEEEEeecccchHHHHHHHHHHHHcCCEEeeccCCCcCEEEecCCCHHHHHHHHhccccccccccEEeecHHH
Confidence 34699999999975432 22345667899999999999888899999986443323332222 1389999999
Q ss_pred HHHHhcCccCCCCccccccC
Q 003386 389 LDCCSQKKLLQLQPKYYLHL 408 (824)
Q Consensus 389 ~DCI~~~~lLp~eP~~ll~~ 408 (824)
.+|+++++++|.+.+|.|..
T Consensus 97 ~esmk~g~lv~ee~~~~l~~ 116 (120)
T 2coe_A 97 IECIGAGKPVEMTGKHQLSG 116 (120)
T ss_dssp HHHHHTTSCCCCSSSSBCCC
T ss_pred HHHHHcCCccCcccceEecc
Confidence 99999999999998888753
No 61
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=98.47 E-value=1.7e-07 Score=96.78 Aligned_cols=90 Identities=20% Similarity=0.325 Sum_probs=69.1
Q ss_pred CCCCCCeEEEEccCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCCCceEEEEecCCCcccchhhhHHHHHHHhhhh
Q 003386 465 WSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHL 544 (824)
Q Consensus 465 ~~lF~gc~~YL~g~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~ls~vTHVVV~~~~~~~~~~~~Lr~~l~~~~~~~ 544 (824)
...+.+++|+|.|+.+ .....+...|+.+||+++++..+|||+|++... +. .+-+. +.
T Consensus 11 ~~~~~~~~i~~SG~~~-----------~~~~~l~~~i~~lGg~v~~~~~~~THLI~~~~~-rT--~K~l~-----A~--- 68 (219)
T 3sqd_A 11 LTPELTPFVLFTGFEP-----------VQVQQYIKKLYILGGEVAESAQKCTHLIASKVT-RT--VKFLT-----AI--- 68 (219)
T ss_dssp CCGGGCCEEEECSCCH-----------HHHHHHHHHHHHTTCEECSSGGGCSEEECSSCC-CC--HHHHH-----HT---
T ss_pred cCCCCCeEEEEeCCCh-----------HHHHHHHHHHHHCCCEEeCCCCCceEEEECCCC-CC--HHHHH-----HH---
Confidence 4457899999999752 234578899999999999998889999997533 21 22111 11
Q ss_pred ccCCccEEecccHHHHHHHhCCccCCCCCCCCCC
Q 003386 545 LWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPT 578 (824)
Q Consensus 545 ~~~~~~~IVt~~WLedCi~~g~~l~Ee~Y~v~~~ 578 (824)
.....||+++||.+|++.++.+||++|.+...
T Consensus 69 --~~g~~IVs~~Wl~~c~~~~~~l~e~~y~l~d~ 100 (219)
T 3sqd_A 69 --SVVKHIVTPEWLEECFRCQKFIDEQNYILRDA 100 (219)
T ss_dssp --TTCSEEECHHHHHHHHHHTSCCCSGGGBCCCH
T ss_pred --HcCCCEecHHHHHHHHHcCCCCChHhccCCCc
Confidence 24568999999999999999999999988654
No 62
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=98.42 E-value=3.7e-07 Score=96.65 Aligned_cols=86 Identities=17% Similarity=0.281 Sum_probs=62.3
Q ss_pred CCCCccCeEEEEEcCC------CC--CCH-HHHHHHHHHcCCEEEecCCCCceEEEEecCCC-h-hHHhHhc---CC-Ce
Q 003386 318 ETSIFSDMVFYFVNVP------PA--YSL-DSLHKMVVENGGTFSMNLNNSVTHCVAADNKG-L-KYEAAKR---RG-DV 382 (824)
Q Consensus 318 ~s~lF~Gl~FcV~~~~------~~--~sk-~eLeklI~~~GG~vv~n~~~s~Th~Ia~~~~t-~-K~~~a~~---~~-dI 382 (824)
...+|+||+|||.... .. ..+ +-++.+|..|||+++.+++..+||+|+.+... . .++.+.+ .. .|
T Consensus 161 ~~~lF~~~~vy~~~~~~~~~~~~~i~~~~l~~~~~~i~~~GG~v~~~l~~~vTHVVv~~~~~r~~~~~~~~~~~~~~~~i 240 (263)
T 3ii6_X 161 PLSMFRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSCLAEGVSHVIIGEDHSRVADFKAFRRTFKRKFKI 240 (263)
T ss_dssp GGGTTTTCEEEECCBSSTTCGGGBCCSSHHHHHHHHHHHTTCEEESSCCTTCCEEEECSCCTTHHHHHHHHHTCSSCCEE
T ss_pred cchhhCCeEEEEecccccCCcccccchhHHHHHHHHHHccCCEEecCCCCCceEEEECCCCccHHHHHHHHhhcCCCCEE
Confidence 4579999999984211 01 112 33478999999999999988899999865322 1 1232222 23 89
Q ss_pred eecchHHHHHhcCccCCCCcc
Q 003386 383 IHYSWVLDCCSQKKLLQLQPK 403 (824)
Q Consensus 383 V~p~WV~DCI~~~~lLp~eP~ 403 (824)
|+++||.+|+++|+++|.++|
T Consensus 241 V~~~Wv~dci~~~~~l~E~~Y 261 (263)
T 3ii6_X 241 LKESWVTDSIDKCELQEENQY 261 (263)
T ss_dssp EETHHHHHHHHTTSCCCGGGT
T ss_pred eChHHHHHHHHcCCcCCHhhC
Confidence 999999999999999998875
No 63
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=98.40 E-value=2.9e-07 Score=94.00 Aligned_cols=85 Identities=15% Similarity=0.196 Sum_probs=61.8
Q ss_pred CCCCCeEEEEccCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCCCceEEEEecCCCcccchhhhHHHHHHHhhhhc
Q 003386 466 SCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHLL 545 (824)
Q Consensus 466 ~lF~gc~~YL~g~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~ls~vTHVVV~~~~~~~~~~~~Lr~~l~~~~~~~~ 545 (824)
....+++|+|.|+.+ + .++..|+.+||.+++++++|||+|++... +. .+-+. .+
T Consensus 8 ~~~~~~~v~~sG~~~----~----------~~~~~i~~lGg~~~~~~~~~THlI~~~~~-rt--~K~l~-a~-------- 61 (209)
T 2etx_A 8 QESTAPKVLFTGVVD----A----------RGERAVLALGGSLAGSAAEASHLVTDRIR-RT--VKFLC-AL-------- 61 (209)
T ss_dssp ----CCEEEECSSCC----H----------HHHHHHHHTTCEECSSTTTCSEEECSSCC-CS--HHHHH-HH--------
T ss_pred ccCCCcEEEEeCCCc----H----------HHHHHHHHCCCEEeCCCCCceEEEECCCC-CC--HHHHH-HH--------
Confidence 346799999999752 1 23688999999999999999999997532 22 22111 11
Q ss_pred cCCccEEecccHHHHHHHhCCccCCCCCCCCC
Q 003386 546 WNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKP 577 (824)
Q Consensus 546 ~~~~~~IVt~~WLedCi~~g~~l~Ee~Y~v~~ 577 (824)
.....||+++||.+|+++++.++|++|.+..
T Consensus 62 -~~g~~IV~~~Wl~~~~~~~~~l~e~~y~~~~ 92 (209)
T 2etx_A 62 -GRGIPILSLDWLHQSRKAGFFLPPDEYVVTD 92 (209)
T ss_dssp -HHTCCEECTHHHHHHHHHTSCCCSGGGBCCC
T ss_pred -hcCCccccHHHHHHHHHcCCCCChhhccccC
Confidence 1246799999999999999999999998853
No 64
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=98.38 E-value=8.4e-07 Score=81.75 Aligned_cols=77 Identities=17% Similarity=0.270 Sum_probs=68.4
Q ss_pred CCCccCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCCCCceEEEEecCCC-hhHHhHhcCC-CeeecchHHHHHhcC
Q 003386 319 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKG-LKYEAAKRRG-DVIHYSWVLDCCSQK 395 (824)
Q Consensus 319 s~lF~Gl~FcV~~~~~~~sk~eLeklI~~~GG~vv~n~~~s~Th~Ia~~~~t-~K~~~a~~~~-dIV~p~WV~DCI~~~ 395 (824)
...|.|+.|||++.....+|++++++|..+||++....+..++|+|+++..+ -|+..|...+ +||+-+|+++++..+
T Consensus 30 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~~~g~sK~~kA~~lgI~Ii~E~~f~~ll~~~ 108 (109)
T 2k6g_A 30 ENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRNL 108 (109)
T ss_dssp TTTTTTCEEEEESBCSSCCHHHHHHHHHHTTCEEESSCCTTCCEEEECBCCCHHHHHHHHHHTCEEECHHHHHHHHHHT
T ss_pred CCCCCCCEEEEeeeCCCCCHHHHHHHHHHcCCEeeCcccCCceEEEECCCCChHHHHHHHHcCCeEEeHHHHHHHHHhC
Confidence 4579999999998776789999999999999999999988889999887767 7888888888 999999999999764
No 65
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=98.36 E-value=1.6e-07 Score=99.19 Aligned_cols=87 Identities=11% Similarity=0.044 Sum_probs=46.7
Q ss_pred CCCCCccCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCCCCceEEEEecCCC---h----hHHhH-h-c--------C
Q 003386 317 GETSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKG---L----KYEAA-K-R--------R 379 (824)
Q Consensus 317 ~~s~lF~Gl~FcV~~~~~~~sk~eLeklI~~~GG~vv~n~~~s~Th~Ia~~~~t---~----K~~~a-~-~--------~ 379 (824)
....+|+||.||+.+.......+-|+.+|..+||+++.++...+||+| .+..+ . +++.. . + .
T Consensus 156 ~~~~lF~g~~~yl~~~~~~~~~~~l~~~i~~~GG~v~~~l~~~t~hVV-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (264)
T 1z56_C 156 FPLFLFSNRIAYVPRRKISTEDDIIEMKIKLFGGKITDQQSLCNLIII-PYTDPILRKDCMNEVHEKIKEQIKASDTIPK 234 (264)
T ss_dssp CCCC--------------------CHHHHHHHTTSCCCCSSSCSEEEC-CCSSTTTHHHHSSHHHHTTTTTTTSSSSCCC
T ss_pred CchhhhCCeEEEEecCCCchhHHHHHHHHHHcCCEEecccCCCEEEEE-eCCCccchHHHHHHHHHHHHhhcccccccCC
Confidence 346799999999976432334456788999999999988875445555 43322 1 12221 1 1 2
Q ss_pred C-CeeecchHHHHHhcCccCCCCccc
Q 003386 380 G-DVIHYSWVLDCCSQKKLLQLQPKY 404 (824)
Q Consensus 380 ~-dIV~p~WV~DCI~~~~lLp~eP~~ 404 (824)
. .||+|+||.||+++|+++|.++|.
T Consensus 235 ~~~iV~~~Wv~dci~~~~ll~e~~Y~ 260 (264)
T 1z56_C 235 IARVVAPEWVDHSINENCQVPEEDFP 260 (264)
T ss_dssp CCEEECTHHHHHHHTTSCCCSSCCC-
T ss_pred CCEEecHHHHHHHHHcCCcCCHHHcC
Confidence 2 799999999999999999999874
No 66
>3kyh_C MRNA-capping enzyme subunit alpha; 5' modification, triphosphatase, guanylyltransferase, complex, hydrolase, mRNA processing, nucleus; 3.00A {Saccharomyces cerevisiae}
Probab=98.33 E-value=2e-07 Score=105.34 Aligned_cols=88 Identities=15% Similarity=0.133 Sum_probs=65.4
Q ss_pred ccEEEEEccHH-------------HHHHHHHHhhcC--------------CCC-ceEEecC-CHHHHHHHHHHH--HhCC
Q 003386 33 ICVCVHVYMLS-------------QLRSQIMAADQT--------------GEP-CWSLVAH-NVDEVEKFFKET--IENR 81 (824)
Q Consensus 33 ~~v~~~~FDll-------------~lr~~L~~l~~~--------------~~~-~~~~~~~-~~~di~~~~~~a--i~~g 81 (824)
.+++|+||||| +|+++|++++.. ..+ .+.+... ...+++.+|+.+ +.++
T Consensus 146 ~~~~y~~FDlL~~~G~dl~~~pl~eR~~~Le~~I~~P~~~~~~~~p~~~~~~pF~V~~K~~~~~~~~~~l~~~~~~l~~~ 225 (461)
T 3kyh_C 146 QELRYLMFDCLAINGRCLTQSPTSSRLAHLGKEFFKPYFDLRAAYPNRCTTFPFKISMKHMDFSYQLVKVAKSLDKLPHL 225 (461)
T ss_dssp EEEEEEEEEEEEETTEECSSSBHHHHHHHHHHTTHHHHHHHHHHCSTTCSCCCSEEEECCCEEGGGHHHHHHHHTTCSSC
T ss_pred cceEEEEEEEEeECCcCcccCCHHHHHHHHHHHhcccchhhhhccccccccCCcEEEeccchhhhhHHHHHHhhhhccCC
Confidence 57899999976 568888877621 112 2333222 224677888744 7899
Q ss_pred CceEEEeCCCCCCcCCCCCCCeEEEccccccCCCcccEEEEE
Q 003386 82 DEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLIIG 123 (824)
Q Consensus 82 ~EGIV~K~~dS~Y~pg~Rs~~WiKiK~~y~~~ge~lDlvVIG 123 (824)
.||||+|+.+|+|.+|.|+.+|+|+||.++ .++|++++-
T Consensus 226 ~EGLv~k~~~spY~~Ggr~~~~lKwKp~~~---nTVDF~L~i 264 (461)
T 3kyh_C 226 SDGLIFTPVKAPYTAGGKDSLLLKWKPEQE---NTVDFKLIL 264 (461)
T ss_dssp EEEEEEEESSSBCCSSSEEEEEEECCCTTT---CCCEEEEEC
T ss_pred CCeEEEEeCCCCCcCCCcCCCeEEEEcCCC---eeEEEEEEe
Confidence 999999999999999779999999999874 489977654
No 67
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=1.5e-06 Score=80.42 Aligned_cols=77 Identities=17% Similarity=0.270 Sum_probs=68.0
Q ss_pred CCCccCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCCCCceEEEEecCCC-hhHHhHhcCC-CeeecchHHHHHhcC
Q 003386 319 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKG-LKYEAAKRRG-DVIHYSWVLDCCSQK 395 (824)
Q Consensus 319 s~lF~Gl~FcV~~~~~~~sk~eLeklI~~~GG~vv~n~~~s~Th~Ia~~~~t-~K~~~a~~~~-dIV~p~WV~DCI~~~ 395 (824)
...|.|+.|||++.....+|++++++|.++||++....+..++|+|+.+..+ -|+..|...+ +||+-+|+++++..+
T Consensus 20 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~LV~G~~~g~sKl~KA~~lgI~IisE~~f~~ll~~~ 98 (112)
T 2ebu_A 20 ENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRTM 98 (112)
T ss_dssp SSSSTTCEEEECSCCSSSCHHHHHHHHHHTTCEECSSCCSSCCEEEECSSCCSHHHHHHHHHTCEEEEHHHHHHHHHHS
T ss_pred CCCcCCCEEEEeeeCCCCCHHHHHHHHHHcCCEEeccccCCeeEEEecCCCChHHHHHHHHcCCeEEeHHHHHHHHhhC
Confidence 3579999999987776789999999999999999999888889999887766 7888888888 999999999999754
No 68
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=98.30 E-value=1.1e-06 Score=81.36 Aligned_cols=83 Identities=14% Similarity=0.157 Sum_probs=69.9
Q ss_pred CCCccCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCCCCceEEEEec---CCChhHHhHhcCC-Ceeecch-------
Q 003386 319 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAAD---NKGLKYEAAKRRG-DVIHYSW------- 387 (824)
Q Consensus 319 s~lF~Gl~FcV~~~~~~~sk~eLeklI~~~GG~vv~n~~~s~Th~Ia~~---~~t~K~~~a~~~~-dIV~p~W------- 387 (824)
...|.|+.|+|++.... +|+++.++|..+||++....+..++|+|+++ ..+-|+..|...+ +||+-+|
T Consensus 8 ~~~l~G~~~ViTG~l~~-~R~e~k~~ie~~Ggkv~~sVskkT~~lV~g~~~e~~gsKl~kA~~lgI~IvsE~~l~~~~~~ 86 (113)
T 2cok_A 8 DKPLSNMKILTLGKLSR-NKDEVKAMIEKLGGKLTGTANKASLCISTKKEVEKMNKKMEEVKEANIRVVSEDFLQDVSAS 86 (113)
T ss_dssp CCSSSSCEEEECSCCSS-CHHHHHHHHHHTTCEEESCSTTCSEEECCHHHHHHCCHHHHHHHHTTCCEECTHHHHHHHSC
T ss_pred CCCcCCCEEEEEecCCC-CHHHHHHHHHHCCCEEcCccccCccEEEECCCCCCCChHHHHHHHCCCcEEeHHHHHHHHhh
Confidence 45799999999876544 8999999999999999998887778888763 2567888888888 9999999
Q ss_pred ---HHHHHhcCccCCCCc
Q 003386 388 ---VLDCCSQKKLLQLQP 402 (824)
Q Consensus 388 ---V~DCI~~~~lLp~eP 402 (824)
+.+||....++||..
T Consensus 87 ~~~~~~~i~k~~i~~w~~ 104 (113)
T 2cok_A 87 TKSLQELFLAHILSSWGA 104 (113)
T ss_dssp CSCHHHHHHHTBCSSCCC
T ss_pred chhHHHHHHHhcCCCCCC
Confidence 777888888888875
No 69
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=98.24 E-value=1.4e-06 Score=92.10 Aligned_cols=101 Identities=12% Similarity=0.139 Sum_probs=67.9
Q ss_pred CCCCCCCeEEEEccCCCCCCC---------------chHHHH---HHHHHHHHHHHHhcCCEEEccCCC-------ceEE
Q 003386 464 KWSCFHGCCIYFYHSTEPLSP---------------DWEVLL---GLALRRLKLEISFHGGKVCNNLAN-------ATHV 518 (824)
Q Consensus 464 ~~~lF~gc~~YL~g~~~~~~~---------------d~~~i~---~~~l~~L~~~I~~~GG~V~~~ls~-------vTHV 518 (824)
...||.||.|+|.+....... +.+... ......|+.+|+.+||+|+++++. +||+
T Consensus 12 ~~~iF~g~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~~~~~~~~~~~t~L 91 (259)
T 1kzy_C 12 NKTLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQCNTAYQCLL 91 (259)
T ss_dssp STTTTTTEEEEECCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSCCTTTTTTTCEEEE
T ss_pred CCcCcCCcEEEEEcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCccccccccCCCeEE
Confidence 356999999999876421000 000000 013457899999999999998874 5899
Q ss_pred EEecCCCcccchhhhHHHHHHHhhhhccCCccEEecccHHHHHHHhCCccCCCCCCCCC
Q 003386 519 VVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKP 577 (824)
Q Consensus 519 VV~~~~~~~~~~~~Lr~~l~~~~~~~~~~~~~~IVt~~WLedCi~~g~~l~Ee~Y~v~~ 577 (824)
|.+... +. .+-+. .+ ...+.||++.||.+|++++++++++.|.+..
T Consensus 92 Ia~~~~-rt--~K~l~-al---------a~g~~iVs~~Wl~dc~~~~~~l~~~~Y~l~~ 137 (259)
T 1kzy_C 92 IADQHC-RT--RKYFL-CL---------ASGIPCVSHVWVHDSCHANQLQNYRNYLLPA 137 (259)
T ss_dssp EESSCC-CS--HHHHH-HH---------HHTCCEEETHHHHHHHHHTSCCCGGGSBCCC
T ss_pred EcCCCC-Cc--HHHHH-HH---------hcCCCCccHHHHHHHHHcCCcCCHHHccCCC
Confidence 887532 22 22111 11 1347899999999999999999999999864
No 70
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=98.22 E-value=1e-06 Score=83.19 Aligned_cols=91 Identities=14% Similarity=0.197 Sum_probs=69.8
Q ss_pred CCCCccCeEEEEEcC-CCCCCHHHHHHHHHHcCCEEEecCCCCceEEEEecCCChh--------HHhHh-c-CC-Ceeec
Q 003386 318 ETSIFSDMVFYFVNV-PPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLK--------YEAAK-R-RG-DVIHY 385 (824)
Q Consensus 318 ~s~lF~Gl~FcV~~~-~~~~sk~eLeklI~~~GG~vv~n~~~s~Th~Ia~~~~t~K--------~~~a~-~-~~-dIV~p 385 (824)
.+..|.|+.+||+.- ....-++-|.+++.++||++...+.+++||||+.+..... ...+. . .+ .+|+.
T Consensus 7 ~~~~F~~v~iyive~kmG~sRr~fL~~la~~kGf~v~~~~S~~VTHVV~E~~s~~~~~~~L~~~~~~l~~~~~~~~lLdi 86 (133)
T 2dun_A 7 GSTRFPGVAIYLVEPRMGRSRRAFLTGLARSKGFRVLDACSSEATHVVMEETSAEEAVSWQERRMAAAPPGCTPPALLDI 86 (133)
T ss_dssp SSCSEEEEEEEECHHHHCSHHHHHHHHHHHHHTEEECSSCCTTCCEEEESSCCHHHHHHHHHHHHHHSCTTCCCCEEEEH
T ss_pred CccccCccEEEEecCCcCHHHHHHHHHHHHhcCCEeccccCCCceEEEecCCCHHHHHHHHHHhhcccCcCCCCcEEecc
Confidence 346899999999863 1223357889999999999999999999999985543322 22221 1 22 79999
Q ss_pred chHHHHHhcCccCCCCccccccC
Q 003386 386 SWVLDCCSQKKLLQLQPKYYLHL 408 (824)
Q Consensus 386 ~WV~DCI~~~~lLp~eP~~ll~~ 408 (824)
.|+.+|++.|+++|.+.+|+|-.
T Consensus 87 sWltecm~~g~pV~~e~~~~l~~ 109 (133)
T 2dun_A 87 SWLTESLGAGQPVPVECRHRLEV 109 (133)
T ss_dssp HHHHHHHHHTSCCCCCTTTSCCC
T ss_pred HHHHHHHhcCCcCCcccceEeec
Confidence 99999999999999998888764
No 71
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=98.19 E-value=2e-06 Score=89.86 Aligned_cols=91 Identities=20% Similarity=0.288 Sum_probs=64.7
Q ss_pred CCCCCeEEEEccCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEcc-----C--C--------------------CceEE
Q 003386 466 SCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNN-----L--A--------------------NATHV 518 (824)
Q Consensus 466 ~lF~gc~~YL~g~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~-----l--s--------------------~vTHV 518 (824)
.+|.||.|+|.+....... ....|..+|+.+||+|.++ + . ..|||
T Consensus 1 ~lF~g~~F~ls~~~~~~~~--------~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~l 72 (241)
T 2vxb_A 1 LIFDDCVFAFSGPVHEDAY--------DRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFV 72 (241)
T ss_dssp CTTTTEEEEECCCSSTTSS--------CHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEE
T ss_pred CCCCCcEEEEecCCCCchh--------hHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEE
Confidence 3799999999986311111 2457899999999999886 1 1 24888
Q ss_pred EEecCCCcccchhhhHHHHHHHhhhhccCCccEEecccHHHHHHHhCCccCCCCCCCCC
Q 003386 519 VVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKP 577 (824)
Q Consensus 519 VV~~~~~~~~~~~~Lr~~l~~~~~~~~~~~~~~IVt~~WLedCi~~g~~l~Ee~Y~v~~ 577 (824)
|.+... +. .+-++ .+ ...+.||+++||.+|++.++++|++.|.+..
T Consensus 73 ia~~~~-rt--~K~~~-al---------a~gipiV~~~Wi~dc~~~~~~~~~~~ylL~~ 118 (241)
T 2vxb_A 73 VSDTFS-RK--VKYLE-AL---------AFNIPCVHPQFIKQCLKMNRVVDFSPYLLAS 118 (241)
T ss_dssp ECSSCC-CC--HHHHH-HH---------HHTCCEECTHHHHHHHHHTSCCCSGGGBBEE
T ss_pred EcCCCC-Cc--HHHHH-HH---------HcCCCEecHHHHHHHHHcCCcCChhhccCCC
Confidence 886532 22 12111 11 2357999999999999999999999998864
No 72
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=98.15 E-value=4.5e-06 Score=86.94 Aligned_cols=86 Identities=19% Similarity=0.160 Sum_probs=63.6
Q ss_pred CCeEEEEccCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEc--cCC-CceEEEEecCCCcccchhhhHHHHHHHhhhhc
Q 003386 469 HGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCN--NLA-NATHVVVLSVLGYDVNFNSLTESFTAREKHLL 545 (824)
Q Consensus 469 ~gc~~YL~g~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~--~ls-~vTHVVV~~~~~~~~~~~~Lr~~l~~~~~~~~ 545 (824)
++.+|.|.++.+ .....+...|+.+||.+++ .++ +|||||+.... +. .+-+. ++
T Consensus 8 ~~~~~~~Sg~~~-----------~~~~~l~~~i~~LGg~~~~~~~~~~~~THlV~~~~~-RT--~K~l~-----ai---- 64 (235)
T 3al2_A 8 KQYIFQLSSLNP-----------QERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPL-RN--EKYLA-----SV---- 64 (235)
T ss_dssp CCCEEEEESCCH-----------HHHHHHHHHHHHTTCEECCSSSCCTTCCEEEESSCC-CS--HHHHH-----HH----
T ss_pred CCEEEEEcCCCH-----------HHHHHHHHHHHHcCCEEeccCCCCCCCcEEEECCCC-CC--HHHHH-----HH----
Confidence 677888988641 1244688999999999986 354 79999998643 22 22111 11
Q ss_pred cCCccEEecccHHHHHHHhCCccCCCCCCCCCC
Q 003386 546 WNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPT 578 (824)
Q Consensus 546 ~~~~~~IVt~~WLedCi~~g~~l~Ee~Y~v~~~ 578 (824)
.....||+++||.+|+++|+.+||++|.+...
T Consensus 65 -a~G~wIvs~~wl~~s~~~g~~l~E~~ye~~~~ 96 (235)
T 3al2_A 65 -AAGKWVLHRSYLEACRTAGHFVQEEDYEWGSS 96 (235)
T ss_dssp -HTTCEEECTHHHHHHHHHTSCCCSGGGBTTSH
T ss_pred -HcCCcCccHHHHHHHHHcCCCCChhceeecCc
Confidence 13578999999999999999999999987754
No 73
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=98.11 E-value=1.1e-06 Score=65.08 Aligned_cols=34 Identities=35% Similarity=0.653 Sum_probs=27.0
Q ss_pred hhHhhhhhhccccCCCccCCCChHHHHHHHhccC
Q 003386 411 SSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVD 444 (824)
Q Consensus 411 ~t~~~~~~~~D~yGDSy~~dit~~~L~~ll~~~~ 444 (824)
++++.+++++|+|||||+.+++.++|+.+|.+|.
T Consensus 2 ~t~~~~~~n~D~yGDSY~rd~t~~eLk~il~~m~ 35 (37)
T 1ik9_C 2 STKEHFAREYDCYGDSYFIDTDLNQLKEVFSGIK 35 (37)
T ss_dssp ------CCSBCTTSCBSSSCCCHHHHHHHHHTCC
T ss_pred cHHHHHHHhcccccccccCcCCHHHHHHHHHHcc
Confidence 4678899999999999999999999999999885
No 74
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=98.01 E-value=5.5e-06 Score=85.49 Aligned_cols=82 Identities=18% Similarity=0.219 Sum_probs=61.7
Q ss_pred CCeEEEEccCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCCCceEEEEecCCCcccchhhhHHHHHHHhhhhccCC
Q 003386 469 HGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNK 548 (824)
Q Consensus 469 ~gc~~YL~g~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~ls~vTHVVV~~~~~~~~~~~~Lr~~l~~~~~~~~~~~ 548 (824)
.+.+|.|.|+.+. + ....|+.+||.+++++++|||+|++... +. .+-|. +. ..
T Consensus 7 ~~~~v~fSG~~~~---~-----------~~~~i~~lGg~v~~~~~~~THlV~~~~~-RT--~K~l~-----Ai-----a~ 59 (220)
T 3l41_A 7 KRVYITFTGYDKK---P-----------SIDNLKKLDMSITSNPSKCTHLIAPRIL-RT--SKFLC-----SI-----PY 59 (220)
T ss_dssp CCEEEEECSCSSC---C-----------CCGGGGGGTEEECSCTTTCSEEECSSCC-CB--HHHHH-----HG-----GG
T ss_pred ceEEEEEeccCCC---C-----------CcchHhhcceeeccCchhhhhhhhhhHh-hh--cceee-----cC-----CC
Confidence 5678888887531 1 1567899999999999899999997532 22 22111 11 23
Q ss_pred ccEEecccHHHHHHHhCCccCCCCCCCCC
Q 003386 549 KLHVVRSQWLEDCLAKEQKSEEYEYSLKP 577 (824)
Q Consensus 549 ~~~IVt~~WLedCi~~g~~l~Ee~Y~v~~ 577 (824)
.+.||+++||.+|++.++.++|++|.+..
T Consensus 60 g~~IVs~~Wl~~~~~~~~~l~e~~y~l~d 88 (220)
T 3l41_A 60 GPCVVTMDWINSCLKTHEIVDEEPYLLND 88 (220)
T ss_dssp CCEEECHHHHHHHHHHTSCCCSGGGBCCC
T ss_pred CCeEEEhHHHHhhhhhhhccccCccccCC
Confidence 46999999999999999999999998764
No 75
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=97.72 E-value=2.3e-05 Score=69.65 Aligned_cols=80 Identities=16% Similarity=0.314 Sum_probs=58.2
Q ss_pred CCCCccCeEEEEEcCCC----CCCHHHHHHHHHHcCCEEEecCCC--CceEEEEecCCChhHHhHhcCCCeeecchHHHH
Q 003386 318 ETSIFSDMVFYFVNVPP----AYSLDSLHKMVVENGGTFSMNLNN--SVTHCVAADNKGLKYEAAKRRGDVIHYSWVLDC 391 (824)
Q Consensus 318 ~s~lF~Gl~FcV~~~~~----~~sk~eLeklI~~~GG~vv~n~~~--s~Th~Ia~~~~t~K~~~a~~~~dIV~p~WV~DC 391 (824)
...+|+|+.||+-.+.. ....++|+++|..|||+++..+.. +..+.|++--++. ..+.|+|.+|.+|
T Consensus 8 ~~~vF~g~~Fyin~d~~a~ds~~d~d~L~~lI~~nGG~Vl~~lP~~s~~~~yVVSpyN~t-------~LpTVtpTYI~aC 80 (106)
T 2l42_A 8 SGPPLSNMKFYLNRDADAHDSLNDIDQLARLIRANGGEVLDSKPRESKENVFIVSPYNHT-------NLPTVTPTYIKAC 80 (106)
T ss_dssp SSCSSCCCCBEECCSSSCSSCSSTHHHHHHHHHTTTSCCCEECCCCCSSCCCCBCTTCCC-------SSSBCCTTHHHHH
T ss_pred cCccccCcEEEEcCCCccchhhhHHHHHHHHHHhcCcEEhhhCcccccCCeEEEeCCCCC-------CCccccHHHHHHH
Confidence 34579999999854422 345799999999999999887642 1223343322221 2289999999999
Q ss_pred HhcCccCCCCccc
Q 003386 392 CSQKKLLQLQPKY 404 (824)
Q Consensus 392 I~~~~lLp~eP~~ 404 (824)
|.++.||++.+|-
T Consensus 81 ~~~nTLLnv~~YL 93 (106)
T 2l42_A 81 CQSNSLLNMENYL 93 (106)
T ss_dssp HHSTTSCGGGGCC
T ss_pred HhcCceecccccc
Confidence 9999999999863
No 76
>3rtx_A MRNA-capping enzyme; guanylyltransferase, RNA polymerase II CTD, lysyl-N-GMP, NUC mRNA capping, transferase; HET: SEP GUN; 2.81A {Mus musculus} PDB: 3s24_A
Probab=97.70 E-value=1.2e-05 Score=88.03 Aligned_cols=83 Identities=19% Similarity=0.333 Sum_probs=48.1
Q ss_pred cEEEEEccHH-------------HHHHHHHHhhcC--------------CCC-ceEEecCC-HHHHHHHH----HHHHhC
Q 003386 34 CVCVHVYMLS-------------QLRSQIMAADQT--------------GEP-CWSLVAHN-VDEVEKFF----KETIEN 80 (824)
Q Consensus 34 ~v~~~~FDll-------------~lr~~L~~l~~~--------------~~~-~~~~~~~~-~~di~~~~----~~ai~~ 80 (824)
.++|++||+| +|+++|++.+.. .+| .+++.... ...+..+| ..++.+
T Consensus 132 ~~~~~~FDlL~~~G~dl~~~pl~eR~~~L~~~i~~p~~~~~~~~~~~~~~~pf~vr~K~~~~~~~~~~ll~~~~~~~l~~ 211 (343)
T 3rtx_A 132 VPRYLIYDIIKFNAQPVGDCDFNIRLQCIEREIISPRHEKMKTGLIDKTQEPFSVRPKQFFDINISRKLLEGNFAKEVSH 211 (343)
T ss_dssp EEEEEEEEEEEBTTBCGGGSCHHHHHHHHHHHTHHHHHHHHHHSSCCTTTSSSEEEECCCEEGGGHHHHSCC--------
T ss_pred eeEEEEEEEEeECCcCcccCCHHHHHHHHHHHhhhHHHHHhhcccccccCCCcEEEEEEeEehhhHHHHHhhhhHhhcCC
Confidence 4689999976 568888764321 111 24443222 23445555 678999
Q ss_pred CCceEEEeCCCCCCcCCCCCCCeEEEccccccCCCcccEEE
Q 003386 81 RDEGIVLKDLGSKWEPGDRSGKWLKLKPEYIRAGSDLDVLI 121 (824)
Q Consensus 81 g~EGIV~K~~dS~Y~pg~Rs~~WiKiK~~y~~~ge~lDlvV 121 (824)
+.||||.+..+ +|.+| |+.+|+|+||.++ -++|+.+
T Consensus 212 ~~dGlIf~~~~-~Y~~G-~~~~~lKwKp~~~---~tvDF~l 247 (343)
T 3rtx_A 212 EMDGLIFQPIG-KYKPG-RCDDILKWKPPSL---NSVDFRL 247 (343)
T ss_dssp --CEEEEEESS-CCCCE-EEEEEEEECCSTT---CC-----
T ss_pred CCCeEEEEECc-cCcCC-CCcceEEEecCcc---eEEEEEE
Confidence 99999999999 99998 8899999999874 3788655
No 77
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=97.66 E-value=2.4e-05 Score=69.53 Aligned_cols=88 Identities=13% Similarity=0.173 Sum_probs=64.3
Q ss_pred CCCCCCeEEEEccCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCCC--c-eEEEEecCCCcccchhhhHHHHHHHh
Q 003386 465 WSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLAN--A-THVVVLSVLGYDVNFNSLTESFTARE 541 (824)
Q Consensus 465 ~~lF~gc~~YL~g~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~ls~--v-THVVV~~~~~~~~~~~~Lr~~l~~~~ 541 (824)
...|+|..|||...+..-+.- ...+.|+++|+.+||+|...+.. . .+.||. +-
T Consensus 9 ~~vF~g~~Fyin~d~~a~ds~------~d~d~L~~lI~~nGG~Vl~~lP~~s~~~~yVVS-py----------------- 64 (106)
T 2l42_A 9 GPPLSNMKFYLNRDADAHDSL------NDIDQLARLIRANGGEVLDSKPRESKENVFIVS-PY----------------- 64 (106)
T ss_dssp SCSSCCCCBEECCSSSCSSCS------STHHHHHHHHHTTTSCCCEECCCCCSSCCCCBC-TT-----------------
T ss_pred CccccCcEEEEcCCCccchhh------hHHHHHHHHHHhcCcEEhhhCcccccCCeEEEe-CC-----------------
Confidence 457999999998854221110 12468999999999999998873 2 244443 21
Q ss_pred hhhccCCccEEecccHHHHHHHhCCccCCCCCCCCCCCC
Q 003386 542 KHLLWNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPTGM 580 (824)
Q Consensus 542 ~~~~~~~~~~IVt~~WLedCi~~g~~l~Ee~Y~v~~~~~ 580 (824)
....+..|++.+|..|+..+++|+-++|+++..-.
T Consensus 65 ----N~t~LpTVtpTYI~aC~~~nTLLnv~~YLvp~d~~ 99 (106)
T 2l42_A 65 ----NHTNLPTVTPTYIKACCQSNSLLNMENYLVPYDNL 99 (106)
T ss_dssp ----CCCSSSBCCTTHHHHHHHSTTSCGGGGCCBCSCC-
T ss_pred ----CCCCCccccHHHHHHHHhcCceecccccccCchhh
Confidence 12356789999999999999999999999987654
No 78
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=97.47 E-value=0.0015 Score=67.84 Aligned_cols=178 Identities=13% Similarity=0.128 Sum_probs=105.7
Q ss_pred eEEEEEcCC-CCCCHHHHHHHHHHcCCEEEecCCC--CceEEEEecC-CChhHHhHhcCCC---eeecchHHHHHhc---
Q 003386 325 MVFYFVNVP-PAYSLDSLHKMVVENGGTFSMNLNN--SVTHCVAADN-KGLKYEAAKRRGD---VIHYSWVLDCCSQ--- 394 (824)
Q Consensus 325 l~FcV~~~~-~~~sk~eLeklI~~~GG~vv~n~~~--s~Th~Ia~~~-~t~K~~~a~~~~d---IV~p~WV~DCI~~--- 394 (824)
+.-+++++. ...+..++ +.++..|=.++++... .++|+||=.. .|.|+-.+...+| ||+|+||.+|++.
T Consensus 23 i~ai~TGc~~~~~~~~D~-~~Lr~LGI~Iv~d~~~~~~~n~LiAPkilRT~KFL~sLa~~P~~~il~p~FI~~~Lk~ih~ 101 (256)
T 3t7k_A 23 LKAVCTGCFHDGFNEVDI-EILNQLGIKIFDNIKETDKLNCIFAPKILRTEKFLKSLSFEPLKFALKPEFIIDLLKQIHS 101 (256)
T ss_dssp EEEEESSSCSSCCCHHHH-HHHHHTTEEECSSCCGGGCCCEEECSSCCCBHHHHHHTTSTTCCEEECTHHHHHHHHHHC-
T ss_pred EEEEecCCcccccCHHHH-HHHHHcCeEEEecCcccCCCCEEEcCchhhHHHHHHHhccCccceEeCHHHHHHHHHHhhc
Confidence 344444444 33344444 3457888888888842 5888886332 5788877766665 9999999999987
Q ss_pred Cc------cCCCCccccccCChhhHhhhhhhccccCCCccCCCChHHHHHHHhccCCCCCcchhHHHhhhcCCCCCCCCC
Q 003386 395 KK------LLQLQPKYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCF 468 (824)
Q Consensus 395 ~~------lLp~eP~~ll~~S~~t~~~~~~~~D~yGDSy~~dit~~~L~~ll~~~~~se~~~~i~~l~~~~~~~~~~~lF 468 (824)
+. ++++++|.+ .+++.+.+ .+ ...+..||
T Consensus 102 ~~~~~~~~~l~~~dY~L-----------------------~d~~~E~l----~r------------------~~~~gkLf 136 (256)
T 3t7k_A 102 KKDKLSQININLFDYEI-----------------------NGINESII----SK------------------TKLPTKVF 136 (256)
T ss_dssp ------CCCCCSSTTBC-----------------------TTCCHHHH----HH------------------TTSSSCHH
T ss_pred CCcccccccCChhhccC-----------------------CCcchhHH----hh------------------hccccccc
Confidence 76 666665422 22222222 11 11346788
Q ss_pred CCe---EEEEccCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccC-----C----------------CceEEEEecCC
Q 003386 469 HGC---CIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNL-----A----------------NATHVVVLSVL 524 (824)
Q Consensus 469 ~gc---~~YL~g~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~l-----s----------------~vTHVVV~~~~ 524 (824)
.|+ +|+|... ..+ - .+.++..+..|||.=+..+ . ...||++....
T Consensus 137 ~~~~I~ciNls~d--I~G-G--------~e~issIleahG~~~~~~l~~~~~~~~dl~~n~~~~~~~~~~~~~ILia~K~ 205 (256)
T 3t7k_A 137 ERANIRCINLVND--IPG-G--------VDTIGSVLKAHGIEKINVLRSKKCTFEDIIPNDVSKQENGGIFKYVLIVTKA 205 (256)
T ss_dssp HHTTCCEEEEETT--CTT-C--------HHHHHHHHHHTTCCEEEEECTTTCCGGGCCCCC--------CCSEEEECSCH
T ss_pred cCCcceeeeeccC--CCC-C--------HHHHHHHHHHcCCceeeecccccccHHHhhhccccccccCCCCCEEEEEccH
Confidence 998 6666653 222 1 2467889999999643322 1 13477776544
Q ss_pred CcccchhhhHHHHHHHhhhhccCCccEEecccHHHHHHHhCC
Q 003386 525 GYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAKEQ 566 (824)
Q Consensus 525 ~~~~~~~~Lr~~l~~~~~~~~~~~~~~IVt~~WLedCi~~g~ 566 (824)
++ .+..++.+.. ...+...-+|..+|...||....
T Consensus 206 ~q---~k~Fkk~~~~----~~~n~~~lvveWdWCVksIF~le 240 (256)
T 3t7k_A 206 SQ---VKKFTKLIND----RDKNETILIVEWNWCVESIFHLN 240 (256)
T ss_dssp HH---HHHHHHHHHH----HSTTSCEEEECHHHHHHHHHTTS
T ss_pred HH---HHHHHHHhhc----ccccceEEEEEcHHHHHHHhhee
Confidence 22 2222222221 12245689999999999998654
No 79
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=96.87 E-value=0.0019 Score=57.51 Aligned_cols=76 Identities=13% Similarity=0.085 Sum_probs=57.4
Q ss_pred CCCCCCCeEEEEccCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhh
Q 003386 464 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREK 542 (824)
Q Consensus 464 ~~~lF~gc~~YL~g~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~ls-~vTHVVV~~~~~~~~~~~~Lr~~l~~~~~ 542 (824)
+...|.|.+|.|.|.- .. . ++.++.+|..+||+|+..++ .++|||+....+.+ + ++ +
T Consensus 4 ~~~~l~G~~~v~TG~l--~~-~--------R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~gsK--~---~k----A-- 61 (92)
T 1l7b_A 4 GGEALKGLTFVITGEL--SR-P--------REEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSK--L---EK----A-- 61 (92)
T ss_dssp CCCSSTTCEEECSTTT--TS-C--------HHHHHHHHHHTTCEEESCCSSSCCCBEECSSSSTT--H---HH----H--
T ss_pred CCCCcCCcEEEEecCC--CC-C--------HHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCChH--H---HH----H--
Confidence 3456999999999963 21 2 45788999999999999999 59999998755432 1 11 1
Q ss_pred hhccCCccEEecccHHHHHHHh
Q 003386 543 HLLWNKKLHVVRSQWLEDCLAK 564 (824)
Q Consensus 543 ~~~~~~~~~IVt~~WLedCi~~ 564 (824)
....++||+.+|+.+++..
T Consensus 62 ---~~lgI~Ii~E~~f~~~l~~ 80 (92)
T 1l7b_A 62 ---RALGVPTLTEEELYRLLEA 80 (92)
T ss_dssp ---HCSSSCCEEHHHHHHHHHH
T ss_pred ---HHcCCcEEeHHHHHHHHHh
Confidence 1346899999999999874
No 80
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=96.30 E-value=0.00064 Score=80.31 Aligned_cols=79 Identities=15% Similarity=0.217 Sum_probs=0.0
Q ss_pred CCCccCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhHHhHhcCC-CeeecchHHHHHhcCcc
Q 003386 319 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCSQKKL 397 (824)
Q Consensus 319 s~lF~Gl~FcV~~~~~~~sk~eLeklI~~~GG~vv~n~~~s~Th~Ia~~~~t~K~~~a~~~~-dIV~p~WV~DCI~~~~l 397 (824)
...|.|++||+++.... +|++++++|.++||++..+.+..++|+|+++..+-|+..|...+ +||+-+|+++++..+.+
T Consensus 585 ~~~l~G~~~v~TG~l~~-~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~~gsKl~KA~~lgI~Ii~E~~f~~~l~~~~~ 663 (667)
T 1dgs_A 585 SDLLSGLTFVLTGELSR-PREEVKALLGRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVAVLTEEEFWRFLKEKGA 663 (667)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCCEEEEeCCCCC-CHHHHHHHHHHcCCEEcCcccCCeeEEEECCCCChHHHHHHHCCCeEEeHHHHHHHHhcCCC
Confidence 56799999999876656 89999999999999999998877889998877788888888888 99999999999987654
Q ss_pred C
Q 003386 398 L 398 (824)
Q Consensus 398 L 398 (824)
.
T Consensus 664 p 664 (667)
T 1dgs_A 664 P 664 (667)
T ss_dssp -
T ss_pred C
Confidence 3
No 81
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=96.16 E-value=0.013 Score=53.71 Aligned_cols=77 Identities=18% Similarity=0.174 Sum_probs=56.1
Q ss_pred CCCCCeEEEEccCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhhhh
Q 003386 466 SCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREKHL 544 (824)
Q Consensus 466 ~lF~gc~~YL~g~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~ls-~vTHVVV~~~~~~~~~~~~Lr~~l~~~~~~~ 544 (824)
..|.|.+|.|.|.-+ .- .++.++.+|..+||+|+..++ .++|||+....+. ..+++ +.
T Consensus 31 ~~l~G~~~v~TG~l~--~~--------~R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~~~g~----sK~~k----A~--- 89 (109)
T 2k6g_A 31 NCLEGLIFVITGVLE--SI--------ERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ----SKSDK----AA--- 89 (109)
T ss_dssp TTTTTCEEEEESBCS--SC--------CHHHHHHHHHHTTCEEESSCCTTCCEEEECBCCCH----HHHHH----HH---
T ss_pred CCCCCCEEEEeeeCC--CC--------CHHHHHHHHHHcCCEeeCcccCCceEEEECCCCCh----HHHHH----HH---
Confidence 469999999999631 11 245788999999999999999 5899999865431 11221 11
Q ss_pred ccCCccEEecccHHHHHHHhC
Q 003386 545 LWNKKLHVVRSQWLEDCLAKE 565 (824)
Q Consensus 545 ~~~~~~~IVt~~WLedCi~~g 565 (824)
...++||+.+|+.+++..+
T Consensus 90 --~lgI~Ii~E~~f~~ll~~~ 108 (109)
T 2k6g_A 90 --ALGTKIIDEDGLLNLIRNL 108 (109)
T ss_dssp --HHTCEEECHHHHHHHHHHT
T ss_pred --HcCCeEEeHHHHHHHHHhC
Confidence 1258999999999999764
No 82
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=95.90 E-value=0.0013 Score=77.73 Aligned_cols=75 Identities=20% Similarity=0.231 Sum_probs=0.0
Q ss_pred CCCccCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCCCCceEEEEecCCChhHHhHhcCC-CeeecchHHHHHh
Q 003386 319 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNLNNSVTHCVAADNKGLKYEAAKRRG-DVIHYSWVLDCCS 393 (824)
Q Consensus 319 s~lF~Gl~FcV~~~~~~~sk~eLeklI~~~GG~vv~n~~~s~Th~Ia~~~~t~K~~~a~~~~-dIV~p~WV~DCI~ 393 (824)
...|.|++||+++.....+|++++++|.++||++..+.+..++|+|+++..+-|+..|...+ +||+-+|+++++.
T Consensus 595 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~~gsKl~KA~~lgI~Ii~E~~f~~~l~ 670 (671)
T 2owo_A 595 DSPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLLG 670 (671)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CCcccCcEEEEcCCCCCCCHHHHHHHHHHcCCEEeCcccCceeEEEECCCCChHHHHHHHCCCcEEcHHHHHHHhc
Confidence 45799999999977767789999999999999999998877889998887788888888888 9999999998874
No 83
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.83 E-value=0.02 Score=52.71 Aligned_cols=78 Identities=17% Similarity=0.126 Sum_probs=56.6
Q ss_pred CCCCCCeEEEEccCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhhh
Q 003386 465 WSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREKH 543 (824)
Q Consensus 465 ~~lF~gc~~YL~g~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~ls-~vTHVVV~~~~~~~~~~~~Lr~~l~~~~~~ 543 (824)
...|.|.+|.|.|.- ..- .+..++.+|..+||+|+..++ .++|||+....+. ..+++ +.
T Consensus 20 ~~~l~G~~~v~TG~l--~~~--------~R~e~~~~i~~~Ggkv~~sVSkkTd~LV~G~~~g~----sKl~K----A~-- 79 (112)
T 2ebu_A 20 ENCLEGLIFVITGVL--ESI--------ERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ----SKSDK----AA-- 79 (112)
T ss_dssp SSSSTTCEEEECSCC--SSS--------CHHHHHHHHHHTTCEECSSCCSSCCEEEECSSCCS----HHHHH----HH--
T ss_pred CCCcCCCEEEEeeeC--CCC--------CHHHHHHHHHHcCCEEeccccCCeeEEEecCCCCh----HHHHH----HH--
Confidence 346999999999963 211 245788999999999999999 5999999865431 11221 11
Q ss_pred hccCCccEEecccHHHHHHHhC
Q 003386 544 LLWNKKLHVVRSQWLEDCLAKE 565 (824)
Q Consensus 544 ~~~~~~~~IVt~~WLedCi~~g 565 (824)
...++||+.+|+.+++..+
T Consensus 80 ---~lgI~IisE~~f~~ll~~~ 98 (112)
T 2ebu_A 80 ---ALGTKIIDEDGLLNLIRTM 98 (112)
T ss_dssp ---HHTCEEEEHHHHHHHHHHS
T ss_pred ---HcCCeEEeHHHHHHHHhhC
Confidence 1258999999999999753
No 84
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=95.50 E-value=0.035 Score=51.18 Aligned_cols=85 Identities=12% Similarity=0.106 Sum_probs=58.6
Q ss_pred CCCCCeEEEEccCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhhhh
Q 003386 466 SCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREKHL 544 (824)
Q Consensus 466 ~lF~gc~~YL~g~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~ls-~vTHVVV~~~~~~~~~~~~Lr~~l~~~~~~~ 544 (824)
..|.|++|.|.|.- . .. ++.++.+|..+||+|+..++ .++|||+... +......+..+.
T Consensus 9 ~~l~G~~~ViTG~l--~-~~--------R~e~k~~ie~~Ggkv~~sVskkT~~lV~g~~------~e~~gsKl~kA~--- 68 (113)
T 2cok_A 9 KPLSNMKILTLGKL--S-RN--------KDEVKAMIEKLGGKLTGTANKASLCISTKKE------VEKMNKKMEEVK--- 68 (113)
T ss_dssp CSSSSCEEEECSCC--S-SC--------HHHHHHHHHHTTCEEESCSTTCSEEECCHHH------HHHCCHHHHHHH---
T ss_pred CCcCCCEEEEEecC--C-CC--------HHHHHHHHHHCCCEEcCccccCccEEEECCC------CCCCChHHHHHH---
Confidence 46999999999952 2 12 45788999999999999999 5889998731 000011121111
Q ss_pred ccCCccEEecccH----------HHHHHHhCCccCCCC
Q 003386 545 LWNKKLHVVRSQW----------LEDCLAKEQKSEEYE 572 (824)
Q Consensus 545 ~~~~~~~IVt~~W----------LedCi~~g~~l~Ee~ 572 (824)
...++||+.+| +.+||....++|...
T Consensus 69 --~lgI~IvsE~~l~~~~~~~~~~~~~i~k~~i~~w~~ 104 (113)
T 2cok_A 69 --EANIRVVSEDFLQDVSASTKSLQELFLAHILSSWGA 104 (113)
T ss_dssp --HTTCCEECTHHHHHHHSCCSCHHHHHHHTBCSSCCC
T ss_pred --HCCCcEEeHHHHHHHHhhchhHHHHHHHhcCCCCCC
Confidence 23589999999 667777777777666
No 85
>3qwu_A DNA ligase; structural genomics, PSI-2, midwest center for structural GE MCSG; HET: DNA ADN; 2.35A {Aquifex aeolicus}
Probab=93.65 E-value=0.037 Score=60.77 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=44.9
Q ss_pred ccEEEEEccHH-----------HHHHHHHHhhcCCCCce-EEecC--CHHHHHHHHHHHHhCCCceEEEeCCC
Q 003386 33 ICVCVHVYMLS-----------QLRSQIMAADQTGEPCW-SLVAH--NVDEVEKFFKETIENRDEGIVLKDLG 91 (824)
Q Consensus 33 ~~v~~~~FDll-----------~lr~~L~~l~~~~~~~~-~~~~~--~~~di~~~~~~ai~~g~EGIV~K~~d 91 (824)
-++.||+||+. ++.++|+++..+..+.+ ++... +.+++.+++++..+.|.||||+|+++
T Consensus 150 ~~i~F~VFDV~d~~~~~~L~~~eR~~ll~~~~lp~V~ii~~~~~~~~~~~~l~~~l~~l~~~g~EGVVlK~~~ 222 (370)
T 3qwu_A 150 EDVQLFVFDFMKKNEQGFLSQEEKMELIEKYNLPHVEILGRFTASEEGIKKIKEILKRFNEEGREGVVFKEDS 222 (370)
T ss_dssp SSCEEEEEEEEETTCCSCCCHHHHHHHHHHHTCCBCCEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred cCceEEEEeCccccCCCcCCHHHHHHHHHHCCCCCccEEEEeCCCCCCHHHHHHHHHHHHhCCCcEEEEecCc
Confidence 37899999973 45667777766554444 33455 57789999999999999999999985
No 86
>2vug_A PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transferase; HET: ANP; 2.9A {Pyrococcus abyssi GE5}
Probab=93.36 E-value=0.12 Score=57.40 Aligned_cols=71 Identities=14% Similarity=0.170 Sum_probs=53.1
Q ss_pred CccEEEEEccHH-----------HHHHHHHHhhcCCCCceEE-ecCCHHHHHHHHHHHHhCCCceEEEeCCCCCCcCCCC
Q 003386 32 GICVCVHVYMLS-----------QLRSQIMAADQTGEPCWSL-VAHNVDEVEKFFKETIENRDEGIVLKDLGSKWEPGDR 99 (824)
Q Consensus 32 ~~~v~~~~FDll-----------~lr~~L~~l~~~~~~~~~~-~~~~~~di~~~~~~ai~~g~EGIV~K~~dS~Y~pg~R 99 (824)
..++.||+||++ ++++.|+++.-+..+.+.. ...+.+++.++++.+...+.||||+|..+ +
T Consensus 171 ~r~l~F~vFDV~~~~~g~~~s~~er~~~L~~lG~~~vp~~~~~~~~~~eel~~~i~~~~~~~~EGvViK~~d-------~ 243 (389)
T 2vug_A 171 KEDIQFFLFDVQEIKTGRSLPVEERLKIAEEYGINHVEVFGKYTKDDVDELYQLIERLSKEGREGIIMKSPD-------M 243 (389)
T ss_dssp CSSCEEEEEEEEETTTCCBCCHHHHHHHHHHHTCCBCCEEEEEEGGGHHHHHHHHHHHHHTTCCEEEEECTT-------S
T ss_pred ccCCEEEEEEeeccCCCCcCCHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHhcCCCCCeEEEEECC-------h
Confidence 458999999975 2467777774433344433 23367999999999999999999999976 3
Q ss_pred CCCeEEEcccc
Q 003386 100 SGKWLKLKPEY 110 (824)
Q Consensus 100 s~~WiKiK~~y 110 (824)
. .|+|.+..+
T Consensus 244 ~-~~lkyt~~~ 253 (389)
T 2vug_A 244 K-KIVKYVTPY 253 (389)
T ss_dssp C-CEEEEECHH
T ss_pred h-hhcCceecC
Confidence 3 699998887
No 87
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.45 E-value=0.22 Score=48.61 Aligned_cols=84 Identities=17% Similarity=0.211 Sum_probs=59.1
Q ss_pred ccCeEEEEEcCC--CCCCHHHHHHHHHHcCCEEEecCC-CCceEEEEecCCC----hhHHhHhcCC-CeeecchHHHHHh
Q 003386 322 FSDMVFYFVNVP--PAYSLDSLHKMVVENGGTFSMNLN-NSVTHCVAADNKG----LKYEAAKRRG-DVIHYSWVLDCCS 393 (824)
Q Consensus 322 F~Gl~FcV~~~~--~~~sk~eLeklI~~~GG~vv~n~~-~s~Th~Ia~~~~t----~K~~~a~~~~-dIV~p~WV~DCI~ 393 (824)
.+|...|+-+.. ..++--++.+.+-.-|++-.+.-. -.+||.|+.+-.+ ...-.++..+ |||+|.||..|--
T Consensus 162 msgitvclgpldplkeisdlqisqclshigarplqrhvaidtthfvcndldneesneelirakhnnipivrpewvracev 241 (290)
T 4gns_A 162 MSGITVCLGPLDPLKEISDLQISQCLSHIGARPLQRHVAIDTTHFVCNDLDNEESNEELIRAKHNNIPIVRPEWVRACEV 241 (290)
T ss_dssp CTTCCEEECCCCGGGTCCHHHHHHHHHHTTCCCCBSSCCTTCCEEECSCCTTCTTCHHHHHHHHTTCCEECTHHHHHHHH
T ss_pred ccCceEEecCCChhhhhhhccHHHHHHHhCCchhhheeeeecceeeecCCCcccchHHHHhhhccCCCccCHHHHHHHhh
Confidence 467788874332 245556778888888998776543 2578999865432 2233344444 9999999999999
Q ss_pred cCccCCCCcccc
Q 003386 394 QKKLLQLQPKYY 405 (824)
Q Consensus 394 ~~~lLp~eP~~l 405 (824)
.++++-...+|+
T Consensus 242 ekrivgvrgfyl 253 (290)
T 4gns_A 242 EKRIVGVRGFYL 253 (290)
T ss_dssp TTSCCCSGGGBT
T ss_pred hheeeeeeeEEE
Confidence 999999887654
No 88
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=92.15 E-value=0.097 Score=56.27 Aligned_cols=68 Identities=16% Similarity=0.134 Sum_probs=48.5
Q ss_pred ccCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecC-CCCceEEEEecCCC----hhH-HhHhcCCCeeecchHHHHHh
Q 003386 322 FSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMNL-NNSVTHCVAADNKG----LKY-EAAKRRGDVIHYSWVLDCCS 393 (824)
Q Consensus 322 F~Gl~FcV~~~~~~~sk~eLeklI~~~GG~vv~n~-~~s~Th~Ia~~~~t----~K~-~~a~~~~dIV~p~WV~DCI~ 393 (824)
+..++||+ + ....+.+|.+.+.+.||+++ ++ .+.+||+|.....+ +|. .+++...+||+++||..+.+
T Consensus 113 W~P~Vl~~-S--ske~~~~L~~~L~~LGik~v-~~~~detTHlVm~krnT~KvTvK~L~ALI~gkPIV~~~Fl~al~~ 186 (325)
T 3huf_A 113 WRSMCIQF-D--NPEMLSQWASNLNLLGIPTG-LRDSDATTHFVMNRQAGSSITVGTMYAFLKKTVIIDDSYLQYLST 186 (325)
T ss_dssp ECCCCEEE-S--CHHHHHHHHHHHHTTTCCEE-SSCCTTCCEEECCCCCSSCCCHHHHHHHHTTCEEECHHHHHHHTT
T ss_pred EeeeEEEe-c--CHHHHHHHHHHHHHcCCEEE-EccCCCEEEEEEeccccccchHHHHHHHHCCCcEecHHHHHHHHH
Confidence 45556666 2 22235679999999999999 77 56799999854444 344 45555559999999999654
No 89
>3vnn_A DNA ligase 4; non-homologous END joining, DNA repair, XRCC4; HET: DNA; 2.90A {Homo sapiens}
Probab=88.82 E-value=0.072 Score=50.68 Aligned_cols=49 Identities=8% Similarity=-0.002 Sum_probs=26.8
Q ss_pred ChHHHhhccccCCCchhhhccCccEEEEEccHH-------------HHHHHHHHhhcCCCCceEE
Q 003386 11 TLSVLHDKDNACNISTVAMNDGICVCVHVYMLS-------------QLRSQIMAADQTGEPCWSL 62 (824)
Q Consensus 11 ~fq~l~~r~~~~~~~~~~~~~~~~v~~~~FDll-------------~lr~~L~~l~~~~~~~~~~ 62 (824)
+|+.++++.+.+.. .. ...+++||+||||| +||++|++++.+..+.+++
T Consensus 74 ~f~~~~~~~~~~~~-~~--~~~~~~~~~vFDlL~l~G~~L~~~pl~eRr~~L~~l~~~~~~~~~~ 135 (139)
T 3vnn_A 74 TFMQKGTKFDIKRM-VE--DSDLQTCYCVFDVLMVNNKKLGHETLRKRYEILSSIFTPIPGRIEI 135 (139)
T ss_dssp EECCC----------------CCEEEEEEEEEEEETTEECSSSCHHHHHHHHHHHCCCBTTBSCB
T ss_pred CHHHHHhhhhhhhh-hh--ccCceEEEEEEEEEeECCcCcccCCHHHHHHHHHHHhhcCCCeEEE
Confidence 45555555444433 11 23679999999987 4689999999775544444
No 90
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=87.30 E-value=0.99 Score=43.67 Aligned_cols=61 Identities=13% Similarity=0.101 Sum_probs=40.7
Q ss_pred CCCCC-CeEEEEccCCCCCCCchHHH-HHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCC
Q 003386 465 WSCFH-GCCIYFYHSTEPLSPDWEVL-LGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLG 525 (824)
Q Consensus 465 ~~lF~-gc~~YL~g~~~~~~~d~~~i-~~~~l~~L~~~I~~~GG~V~~~ls-~vTHVVV~~~~~ 525 (824)
..+|. +++|||+...+......... ......+|++.+...|+++..-++ +|||||...+.+
T Consensus 56 Rkifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~FFd~~VTiVIT~R~i~ 119 (160)
T 3qbz_A 56 KKIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVE 119 (160)
T ss_dssp HHHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESSCCTTCCEEEESSCSS
T ss_pred HHhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeeeccCCeEEEEecCcCc
Confidence 34787 89999997542111111100 112234567888999999999999 699999987653
No 91
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=86.41 E-value=0.8 Score=47.61 Aligned_cols=71 Identities=13% Similarity=0.231 Sum_probs=48.8
Q ss_pred HHHHHhcCCEEEccCC---CceEEEEecCCCcccchhhhHHHHHHHhhhhccCCccEEecccHHHHHHHh---CC-----
Q 003386 498 KLEISFHGGKVCNNLA---NATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAK---EQ----- 566 (824)
Q Consensus 498 ~~~I~~~GG~V~~~ls---~vTHVVV~~~~~~~~~~~~Lr~~l~~~~~~~~~~~~~~IVt~~WLedCi~~---g~----- 566 (824)
.+.++..|=+++++++ .|+|||.|... +. .+-|+ +| -....-+||+++||.+|++. ++
T Consensus 40 ~~~Lr~LGI~Iv~d~~~~~~~n~LiAPkil-RT--~KFL~-sL-------a~~P~~~il~p~FI~~~Lk~ih~~~~~~~~ 108 (256)
T 3t7k_A 40 IEILNQLGIKIFDNIKETDKLNCIFAPKIL-RT--EKFLK-SL-------SFEPLKFALKPEFIIDLLKQIHSKKDKLSQ 108 (256)
T ss_dssp HHHHHHTTEEECSSCCGGGCCCEEECSSCC-CB--HHHHH-HT-------TSTTCCEEECTHHHHHHHHHHC-------C
T ss_pred HHHHHHcCeEEEecCcccCCCCEEEcCchh-hH--HHHHH-Hh-------ccCccceEeCHHHHHHHHHHhhcCCccccc
Confidence 4577899999999994 69999998654 22 22122 11 01122269999999999998 77
Q ss_pred -ccCCCCCCCCCCC
Q 003386 567 -KSEEYEYSLKPTG 579 (824)
Q Consensus 567 -~l~Ee~Y~v~~~~ 579 (824)
+++.++|.+.-..
T Consensus 109 ~~l~~~dY~L~d~~ 122 (256)
T 3t7k_A 109 ININLFDYEINGIN 122 (256)
T ss_dssp CCCCSSTTBCTTCC
T ss_pred ccCChhhccCCCcc
Confidence 8899999865444
No 92
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=84.02 E-value=2.7 Score=40.35 Aligned_cols=61 Identities=15% Similarity=0.127 Sum_probs=40.6
Q ss_pred CCCCC-CCeEEEEccCCCCCCCchHH-HHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCC
Q 003386 464 KWSCF-HGCCIYFYHSTEPLSPDWEV-LLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVL 524 (824)
Q Consensus 464 ~~~lF-~gc~~YL~g~~~~~~~d~~~-i~~~~l~~L~~~I~~~GG~V~~~ls-~vTHVVV~~~~ 524 (824)
+..|. ++.+|||+............ -.+...++|++.|...||+|..-++ +|||||...+.
T Consensus 17 WrkIM~r~s~iYFdt~~~~~~~~~~~~~l~k~~~llkk~f~~LGa~I~~FFd~~VTiIITrR~~ 80 (151)
T 3oq0_A 17 RGSHMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSV 80 (151)
T ss_dssp ----CCCCCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHHHTCEEESSCCTTCCEEEESSCG
T ss_pred HHHHhccCCEEEEeCCCcchhhHHHHHHHHHHHHHHHHHHHHcCCEEeeecCCceEEEEeCCcC
Confidence 44577 89999999753221111111 1234557788999999999999998 69999997654
No 93
>3oq4_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.40A {Saccharomyces cerevisiae}
Probab=82.40 E-value=3.7 Score=38.62 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=39.6
Q ss_pred CCeEEEEccCCCCCCCchHH-HHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCC
Q 003386 469 HGCCIYFYHSTEPLSPDWEV-LLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVL 524 (824)
Q Consensus 469 ~gc~~YL~g~~~~~~~d~~~-i~~~~l~~L~~~I~~~GG~V~~~ls-~vTHVVV~~~~ 524 (824)
+..+|||+...+........ -.+...++|++.|...||+|..-++ +|||||...+.
T Consensus 6 r~s~iyfd~~~~~~~~~~~~~k~~k~~~llk~~f~~LGa~I~~FFd~~VTiiITrR~~ 63 (134)
T 3oq4_A 6 RDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSV 63 (134)
T ss_dssp TTCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHHTTCEEESSCCTTCCEEEESSCG
T ss_pred ccceEEecCCchHHHHHHHHHhhHHHHHHHHHHHHHcCCEEeeecCCceEEEEeCCcC
Confidence 56789999864321111111 1234567899999999999999998 69999997654
No 94
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=76.52 E-value=5.5 Score=38.85 Aligned_cols=94 Identities=16% Similarity=0.282 Sum_probs=58.6
Q ss_pred CCCeEEEEccCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEE-ccCC-CceEEEEecCCCcccchhhhHHHHHHHhhhhc
Q 003386 468 FHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVC-NNLA-NATHVVVLSVLGYDVNFNSLTESFTAREKHLL 545 (824)
Q Consensus 468 F~gc~~YL~g~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~-~~ls-~vTHVVV~~~~~~~~~~~~Lr~~l~~~~~~~~ 545 (824)
..|.++|+-...++ ..|+++ .+...+..-|+.-. .... +.||.|+.+-++...+-.-+|. +
T Consensus 162 msgitvclgpldpl-----keisdl---qisqclshigarplqrhvaidtthfvcndldneesneelira------k--- 224 (290)
T 4gns_A 162 MSGITVCLGPLDPL-----KEISDL---QISQCLSHIGARPLQRHVAIDTTHFVCNDLDNEESNEELIRA------K--- 224 (290)
T ss_dssp CTTCCEEECCCCGG-----GTCCHH---HHHHHHHHTTCCCCBSSCCTTCCEEECSCCTTCTTCHHHHHH------H---
T ss_pred ccCceEEecCCChh-----hhhhhc---cHHHHHHHhCCchhhheeeeecceeeecCCCcccchHHHHhh------h---
Confidence 57888988664321 123333 34556666666543 2334 7999999765432222221221 1
Q ss_pred cCCccEEecccHHHHHHHhCCccCCCCCCCCCCC
Q 003386 546 WNKKLHVVRSQWLEDCLAKEQKSEEYEYSLKPTG 579 (824)
Q Consensus 546 ~~~~~~IVt~~WLedCi~~g~~l~Ee~Y~v~~~~ 579 (824)
-.++.||.++|+..|--+.+++.-..|-+...+
T Consensus 225 -hnnipivrpewvracevekrivgvrgfyldadq 257 (290)
T 4gns_A 225 -HNNIPIVRPEWVRACEVEKRIVGVRGFYLDADQ 257 (290)
T ss_dssp -HTTCCEECTHHHHHHHHTTSCCCSGGGBTTSCG
T ss_pred -ccCCCccCHHHHHHHhhhheeeeeeeEEEcccH
Confidence 135789999999999999999998888665544
No 95
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=73.08 E-value=5.1 Score=43.08 Aligned_cols=59 Identities=14% Similarity=0.166 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCCEEEccC-C-CceEEEEecCCCcccchhhhHHHHHHHhhhhccCCccEEecccHHHHHHHh
Q 003386 495 RRLKLEISFHGGKVCNNL-A-NATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWLEDCLAK 564 (824)
Q Consensus 495 ~~L~~~I~~~GG~V~~~l-s-~vTHVVV~~~~~~~~~~~~Lr~~l~~~~~~~~~~~~~~IVt~~WLedCi~~ 564 (824)
..|+..+...||+++ +. . .|||||+..-...+...+-|...+ ...+||+++||.+....
T Consensus 127 ~~L~~~L~~LGik~v-~~~~detTHlVm~krnT~KvTvK~L~ALI----------~gkPIV~~~Fl~al~~~ 187 (325)
T 3huf_A 127 SQWASNLNLLGIPTG-LRDSDATTHFVMNRQAGSSITVGTMYAFL----------KKTVIIDDSYLQYLSTV 187 (325)
T ss_dssp HHHHHHHHTTTCCEE-SSCCTTCCEEECCCCCSSCCCHHHHHHHH----------TTCEEECHHHHHHHTTC
T ss_pred HHHHHHHHHcCCEEE-EccCCCEEEEEEeccccccchHHHHHHHH----------CCCcEecHHHHHHHHHh
Confidence 348889999999999 65 4 599999964222222233333222 24589999999997643
No 96
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=62.76 E-value=1.6 Score=51.74 Aligned_cols=75 Identities=13% Similarity=0.123 Sum_probs=0.0
Q ss_pred CCCCCeEEEEccCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhhhh
Q 003386 466 SCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREKHL 544 (824)
Q Consensus 466 ~lF~gc~~YL~g~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~ls-~vTHVVV~~~~~~~~~~~~Lr~~l~~~~~~~ 544 (824)
..|.|.+|.|.|.- .. .++.++.+|..+||+|+...+ .++|||+....+++ + .+ +
T Consensus 586 ~~l~G~~~v~TG~l--~~---------~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~~gsK--l---~K----A---- 641 (667)
T 1dgs_A 586 DLLSGLTFVLTGEL--SR---------PREEVKALLGRLGAKVTDSVSRKTSYLVVGENPGSK--L---EK----A---- 641 (667)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCCEEEEeCCC--CC---------CHHHHHHHHHHcCCEEcCcccCCeeEEEECCCCChH--H---HH----H----
Confidence 46899999999952 11 245678899999999999999 58899987654322 1 11 1
Q ss_pred ccCCccEEecccHHHHHHHhC
Q 003386 545 LWNKKLHVVRSQWLEDCLAKE 565 (824)
Q Consensus 545 ~~~~~~~IVt~~WLedCi~~g 565 (824)
....++||+.+|+.+.+..+
T Consensus 642 -~~lgI~Ii~E~~f~~~l~~~ 661 (667)
T 1dgs_A 642 -RALGVAVLTEEEFWRFLKEK 661 (667)
T ss_dssp ---------------------
T ss_pred -HHCCCeEEeHHHHHHHHhcC
Confidence 12368999999999998755
No 97
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=57.80 E-value=2.1 Score=50.61 Aligned_cols=74 Identities=16% Similarity=0.174 Sum_probs=0.0
Q ss_pred CCCCCeEEEEccCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEccCC-CceEEEEecCCCcccchhhhHHHHHHHhhhh
Q 003386 466 SCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNNLA-NATHVVVLSVLGYDVNFNSLTESFTAREKHL 544 (824)
Q Consensus 466 ~lF~gc~~YL~g~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~ls-~vTHVVV~~~~~~~~~~~~Lr~~l~~~~~~~ 544 (824)
..|.|.+|.|.|.-. ...++.++.+|..+||+|+...+ .++|||+....+++ + .+ +
T Consensus 596 ~~l~G~~~v~TG~l~----------~~~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~~gsK--l---~K----A---- 652 (671)
T 2owo_A 596 SPFAGKTVVLTGSLS----------QMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSK--L---AK----A---- 652 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccCcEEEEcCCCC----------CCCHHHHHHHHHHcCCEEeCcccCceeEEEECCCCChH--H---HH----H----
Confidence 469999999999521 12345778899999999999999 58899998654322 1 11 1
Q ss_pred ccCCccEEecccHHHHHHH
Q 003386 545 LWNKKLHVVRSQWLEDCLA 563 (824)
Q Consensus 545 ~~~~~~~IVt~~WLedCi~ 563 (824)
....++||+.+|+.+.+.
T Consensus 653 -~~lgI~Ii~E~~f~~~l~ 670 (671)
T 2owo_A 653 -QELGIEVIDEAEMLRLLG 670 (671)
T ss_dssp -------------------
T ss_pred -HHCCCcEEcHHHHHHHhc
Confidence 123689999999988763
No 98
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=35.37 E-value=32 Score=33.24 Aligned_cols=49 Identities=16% Similarity=0.252 Sum_probs=35.0
Q ss_pred CCcc-CeEEEEEcCCCC-CC---HHH-------HHHHHHHcCCEEEecCCCCceEEEEecC
Q 003386 320 SIFS-DMVFYFVNVPPA-YS---LDS-------LHKMVVENGGTFSMNLNNSVTHCVAADN 368 (824)
Q Consensus 320 ~lF~-Gl~FcV~~~~~~-~s---k~e-------LeklI~~~GG~vv~n~~~s~Th~Ia~~~ 368 (824)
.+|. ++.||+-+.++. .+ +.+ |.+-+...|++++.-++..+||+|...+
T Consensus 57 kifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~FFd~~VTiVIT~R~ 117 (160)
T 3qbz_A 57 KIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRS 117 (160)
T ss_dssp HHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESSCCTTCCEEEESSC
T ss_pred HhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeeeccCCeEEEEecCc
Confidence 5787 899999765432 22 222 3346678999999999889999997544
No 99
>2k2w_A Recombination and DNA repair protein; BRCT domain, cell cycle checkpoint; NMR {Xenopus laevis}
Probab=31.27 E-value=50 Score=30.38 Aligned_cols=34 Identities=35% Similarity=0.546 Sum_probs=26.7
Q ss_pred CCCccCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEec
Q 003386 319 TSIFSDMVFYFVNVPPAYSLDSLHKMVVENGGTFSMN 355 (824)
Q Consensus 319 s~lF~Gl~FcV~~~~~~~sk~eLeklI~~~GG~vv~n 355 (824)
..||+|.+|.+++-. -...|..+|...||...-.
T Consensus 11 ~~LF~GKtFvFLn~K---Q~kkl~~aV~~~GG~~~l~ 44 (118)
T 2k2w_A 11 KSIFKDKVFLFLNAK---QYKKLSPAVLFGGGKTDLL 44 (118)
T ss_dssp SCSSTTCEEEESCSS---THHHHHHHHHHTTCEEECC
T ss_pred HhhccCCEEEEeCHH---HHHHHHHHHHhcCceEEec
Confidence 469999999998643 2467888999999997543
No 100
>2k2w_A Recombination and DNA repair protein; BRCT domain, cell cycle checkpoint; NMR {Xenopus laevis}
Probab=30.21 E-value=49 Score=30.43 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=28.8
Q ss_pred CCCCCCCeEEEEccCCCCCCCchHHHHHHHHHHHHHHHHhcCCEEEcc
Q 003386 464 KWSCFHGCCIYFYHSTEPLSPDWEVLLGLALRRLKLEISFHGGKVCNN 511 (824)
Q Consensus 464 ~~~lF~gc~~YL~g~~~~~~~d~~~i~~~~l~~L~~~I~~~GG~V~~~ 511 (824)
...||+|-+|.|.... +..+|...|.++||.....
T Consensus 10 ~~~LF~GKtFvFLn~K-------------Q~kkl~~aV~~~GG~~~l~ 44 (118)
T 2k2w_A 10 RKSIFKDKVFLFLNAK-------------QYKKLSPAVLFGGGKTDLL 44 (118)
T ss_dssp CSCSSTTCEEEESCSS-------------THHHHHHHHHHTTCEEECC
T ss_pred HHhhccCCEEEEeCHH-------------HHHHHHHHHHhcCceEEec
Confidence 3569999999998753 3568899999999999865
Done!