Query 003387
Match_columns 824
No_of_seqs 468 out of 4258
Neff 9.4
Searched_HMMs 46136
Date Thu Mar 28 22:29:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003387.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003387hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 4.5E-86 9.7E-91 770.8 38.0 751 1-781 1-864 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.5E-58 3.3E-63 570.3 43.6 608 154-799 182-904 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.5E-38 5.5E-43 335.7 14.3 242 161-405 1-284 (287)
4 KOG0444 Cytoskeletal regulator 99.9 4.9E-27 1.1E-31 248.0 -5.8 315 470-799 54-373 (1255)
5 PLN00113 leucine-rich repeat r 99.9 9.9E-24 2.1E-28 261.5 20.6 275 520-799 139-439 (968)
6 PLN00113 leucine-rich repeat r 99.9 5.7E-24 1.2E-28 263.6 17.9 300 492-799 139-486 (968)
7 KOG4194 Membrane glycoprotein 99.9 1.7E-22 3.7E-27 212.9 4.6 317 470-799 101-427 (873)
8 KOG4194 Membrane glycoprotein 99.8 8.1E-21 1.8E-25 200.4 1.6 323 469-806 123-463 (873)
9 KOG0472 Leucine-rich repeat pr 99.8 7.6E-22 1.7E-26 199.6 -7.1 175 487-672 106-284 (565)
10 KOG0444 Cytoskeletal regulator 99.8 1E-21 2.3E-26 208.0 -7.5 307 470-799 6-327 (1255)
11 PLN03210 Resistant to P. syrin 99.8 3.8E-18 8.1E-23 212.0 20.4 289 469-781 587-910 (1153)
12 KOG0618 Serine/threonine phosp 99.7 1.1E-18 2.3E-23 194.4 -1.3 78 690-769 358-435 (1081)
13 KOG0472 Leucine-rich repeat pr 99.7 2.5E-19 5.4E-24 181.5 -10.1 260 522-799 46-308 (565)
14 KOG0618 Serine/threonine phosp 99.6 1.9E-17 4E-22 184.6 -5.2 106 688-799 380-487 (1081)
15 PRK15387 E3 ubiquitin-protein 99.5 2.9E-14 6.3E-19 164.7 12.2 234 521-799 222-456 (788)
16 PRK15370 E3 ubiquitin-protein 99.5 3.1E-14 6.6E-19 165.7 9.8 241 523-799 180-426 (754)
17 PRK15387 E3 ubiquitin-protein 99.5 1E-13 2.2E-18 160.2 12.4 260 475-784 205-465 (788)
18 KOG0617 Ras suppressor protein 99.4 2.3E-15 4.9E-20 135.8 -5.1 150 519-673 31-183 (264)
19 PRK15370 E3 ubiquitin-protein 99.4 1.5E-13 3.3E-18 159.9 8.1 117 473-604 180-296 (754)
20 KOG4658 Apoptotic ATPase [Sign 99.4 7.7E-13 1.7E-17 156.4 7.9 281 487-781 516-846 (889)
21 cd00116 LRR_RI Leucine-rich re 99.4 2E-13 4.3E-18 147.3 2.2 265 512-799 14-318 (319)
22 KOG0617 Ras suppressor protein 99.4 1.6E-14 3.4E-19 130.4 -5.3 159 492-662 32-195 (264)
23 cd00116 LRR_RI Leucine-rich re 99.3 1.2E-12 2.5E-17 141.3 1.3 250 525-799 2-289 (319)
24 KOG4237 Extracellular matrix p 99.2 4.8E-13 1E-17 136.3 -2.4 273 486-776 60-358 (498)
25 KOG4237 Extracellular matrix p 99.1 2.6E-12 5.7E-17 131.0 -2.8 270 523-799 69-357 (498)
26 KOG3207 Beta-tubulin folding c 99.0 1E-10 2.3E-15 121.2 4.1 235 541-803 118-369 (505)
27 PRK00411 cdc6 cell division co 98.9 6.8E-08 1.5E-12 107.3 21.5 117 154-276 28-150 (394)
28 KOG4341 F-box protein containi 98.9 6.3E-11 1.4E-15 122.2 -2.9 121 689-809 318-447 (483)
29 PF14580 LRR_9: Leucine-rich r 98.9 1.8E-09 3.9E-14 102.9 6.3 130 518-671 16-148 (175)
30 KOG2120 SCF ubiquitin ligase, 98.9 1.8E-10 3.8E-15 113.6 -1.4 182 569-775 186-374 (419)
31 KOG0532 Leucine-rich repeat (L 98.8 1.5E-10 3.3E-15 123.6 -4.6 153 513-674 90-245 (722)
32 KOG1909 Ran GTPase-activating 98.8 4.2E-10 9.1E-15 113.8 -1.9 254 512-776 21-310 (382)
33 KOG3207 Beta-tubulin folding c 98.8 7.8E-10 1.7E-14 114.9 -0.3 42 516-557 141-185 (505)
34 PRK04841 transcriptional regul 98.8 1.6E-07 3.5E-12 116.4 19.7 268 156-451 14-331 (903)
35 TIGR02928 orc1/cdc6 family rep 98.8 9.4E-07 2E-11 97.1 23.6 117 155-276 14-141 (365)
36 KOG1259 Nischarin, modulator o 98.8 1.7E-09 3.7E-14 106.7 1.6 128 565-725 281-409 (490)
37 TIGR03015 pepcterm_ATPase puta 98.7 3.4E-07 7.5E-12 96.0 17.8 170 165-345 28-242 (269)
38 COG4886 Leucine-rich repeat (L 98.7 1.4E-08 3.1E-13 112.8 5.0 177 516-728 111-290 (394)
39 PF14580 LRR_9: Leucine-rich r 98.7 1.3E-08 2.9E-13 97.0 3.7 107 492-604 18-126 (175)
40 COG4886 Leucine-rich repeat (L 98.6 5.7E-08 1.2E-12 108.0 5.9 194 524-753 96-290 (394)
41 KOG1909 Ran GTPase-activating 98.5 1.4E-08 3E-13 103.1 -1.0 241 492-752 29-310 (382)
42 KOG1259 Nischarin, modulator o 98.5 1.5E-08 3.3E-13 100.1 -0.8 127 517-648 280-410 (490)
43 KOG2120 SCF ubiquitin ligase, 98.5 5.3E-09 1.1E-13 103.4 -4.1 169 626-801 199-376 (419)
44 cd01128 rho_factor Transcripti 98.5 2E-07 4.3E-12 94.7 6.8 95 179-276 16-115 (249)
45 PF13855 LRR_8: Leucine rich r 98.5 8.9E-08 1.9E-12 74.8 2.9 58 545-602 2-60 (61)
46 KOG0532 Leucine-rich repeat (L 98.4 2.2E-08 4.7E-13 107.4 -2.0 162 486-660 89-254 (722)
47 PF13855 LRR_8: Leucine rich r 98.4 1.7E-07 3.7E-12 73.2 3.5 60 521-580 1-61 (61)
48 PF01637 Arch_ATPase: Archaeal 98.4 1.2E-06 2.6E-11 89.7 10.6 55 158-216 1-55 (234)
49 KOG4341 F-box protein containi 98.4 1.7E-08 3.7E-13 104.5 -3.0 278 492-795 163-459 (483)
50 PF05729 NACHT: NACHT domain 98.4 7.9E-07 1.7E-11 85.6 8.7 114 180-305 1-133 (166)
51 cd00009 AAA The AAA+ (ATPases 98.4 2.7E-06 5.8E-11 79.8 11.5 122 159-302 1-130 (151)
52 KOG2982 Uncharacterized conser 98.3 1E-07 2.2E-12 94.4 0.6 92 512-603 62-158 (418)
53 PRK09376 rho transcription ter 98.3 5.7E-07 1.2E-11 95.0 5.6 106 167-276 158-268 (416)
54 PF13401 AAA_22: AAA domain; P 98.3 1.1E-06 2.3E-11 81.0 6.8 113 179-301 4-125 (131)
55 COG2909 MalT ATP-dependent tra 98.3 1E-05 2.2E-10 92.0 13.6 265 165-450 24-336 (894)
56 KOG0531 Protein phosphatase 1, 98.2 1.6E-07 3.5E-12 104.6 -0.8 241 520-778 71-319 (414)
57 PF13173 AAA_14: AAA domain 98.2 2.5E-06 5.5E-11 78.0 7.2 101 179-305 2-102 (128)
58 PF13191 AAA_16: AAA ATPase do 98.2 1.2E-06 2.6E-11 86.1 5.3 46 157-202 1-47 (185)
59 PLN03150 hypothetical protein; 98.2 2.4E-06 5.1E-11 99.8 8.1 86 522-609 419-507 (623)
60 KOG2982 Uncharacterized conser 98.2 6E-07 1.3E-11 89.1 2.5 83 522-604 46-134 (418)
61 COG5238 RNA1 Ran GTPase-activa 98.2 1.1E-07 2.4E-12 93.0 -3.6 249 518-776 27-315 (388)
62 PRK00080 ruvB Holliday junctio 98.1 2.5E-05 5.4E-10 84.1 13.5 250 155-427 24-310 (328)
63 TIGR00767 rho transcription te 98.1 5.8E-06 1.3E-10 88.0 7.0 95 179-276 168-267 (415)
64 PTZ00202 tuzin; Provisional 98.0 5.6E-05 1.2E-09 80.5 12.9 80 150-239 256-336 (550)
65 KOG0531 Protein phosphatase 1, 98.0 6.4E-07 1.4E-11 99.8 -1.7 220 516-751 90-316 (414)
66 PTZ00112 origin recognition co 98.0 4.5E-05 9.9E-10 87.5 12.6 117 155-276 754-881 (1164)
67 TIGR00635 ruvB Holliday juncti 98.0 2E-05 4.4E-10 84.2 8.5 249 156-427 4-289 (305)
68 PLN03150 hypothetical protein; 98.0 9E-06 2E-10 95.0 6.2 91 688-779 439-530 (623)
69 PF12799 LRR_4: Leucine Rich r 97.9 1E-05 2.3E-10 57.8 3.8 39 545-584 2-40 (44)
70 KOG3665 ZYG-1-like serine/thre 97.9 6.1E-06 1.3E-10 96.0 3.7 108 492-603 121-232 (699)
71 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.4E-10 57.7 3.2 41 521-561 1-41 (44)
72 PRK05564 DNA polymerase III su 97.9 0.0002 4.2E-09 76.7 14.3 125 156-303 4-134 (313)
73 PRK15386 type III secretion pr 97.9 3.9E-05 8.5E-10 82.3 8.5 134 517-672 48-186 (426)
74 COG1474 CDC6 Cdc6-related prot 97.9 8.6E-05 1.9E-09 80.1 11.1 113 156-276 17-135 (366)
75 KOG3665 ZYG-1-like serine/thre 97.8 8.5E-06 1.8E-10 94.8 3.2 109 492-605 147-264 (699)
76 KOG2543 Origin recognition com 97.8 0.00011 2.4E-09 76.2 10.3 118 155-279 5-130 (438)
77 PRK13342 recombination factor 97.8 4.7E-05 1E-09 84.6 8.0 44 156-201 12-58 (413)
78 KOG1859 Leucine-rich repeat pr 97.7 1.3E-06 2.7E-11 96.6 -5.3 94 548-647 168-264 (1096)
79 TIGR02903 spore_lon_C ATP-depe 97.7 0.00055 1.2E-08 79.5 15.1 142 156-302 154-334 (615)
80 PRK06893 DNA replication initi 97.7 9.5E-05 2.1E-09 75.1 7.3 36 179-216 39-74 (229)
81 KOG4579 Leucine-rich repeat (L 97.7 4.6E-06 1E-10 73.6 -2.0 84 521-604 27-113 (177)
82 TIGR03420 DnaA_homol_Hda DnaA 97.7 9.2E-05 2E-09 75.3 7.0 52 161-216 22-73 (226)
83 PRK12402 replication factor C 97.6 0.0002 4.3E-09 77.8 10.0 44 156-201 15-58 (337)
84 KOG1859 Leucine-rich repeat pr 97.6 1.3E-06 2.7E-11 96.6 -7.7 121 522-648 165-290 (1096)
85 PRK11331 5-methylcytosine-spec 97.6 0.00027 5.8E-09 76.9 9.7 108 156-276 175-284 (459)
86 KOG1947 Leucine rich repeat pr 97.6 1.8E-05 3.9E-10 90.6 0.7 245 512-802 179-441 (482)
87 TIGR01242 26Sp45 26S proteasom 97.5 0.00011 2.3E-09 80.4 6.1 55 153-209 119-184 (364)
88 COG2256 MGS1 ATPase related to 97.5 0.00027 5.8E-09 74.2 8.1 111 153-300 27-139 (436)
89 PRK07003 DNA polymerase III su 97.5 0.00062 1.3E-08 78.1 11.3 137 155-303 15-160 (830)
90 PRK13341 recombination factor 97.5 0.00031 6.8E-09 82.3 9.1 50 156-209 28-80 (725)
91 smart00382 AAA ATPases associa 97.5 0.00054 1.2E-08 63.4 8.9 89 180-278 3-92 (148)
92 PRK14961 DNA polymerase III su 97.4 0.0012 2.5E-08 72.2 12.4 46 155-201 15-60 (363)
93 PRK12323 DNA polymerase III su 97.4 0.0014 3E-08 74.3 13.0 46 155-201 15-60 (700)
94 PHA02544 44 clamp loader, smal 97.4 0.00066 1.4E-08 72.9 10.3 119 155-302 20-141 (316)
95 PRK04195 replication factor C 97.4 0.00065 1.4E-08 77.1 10.1 117 156-300 14-138 (482)
96 PRK14957 DNA polymerase III su 97.4 0.001 2.2E-08 75.2 11.5 46 155-201 15-60 (546)
97 PRK14963 DNA polymerase III su 97.4 0.00018 3.9E-09 81.1 5.3 139 156-301 14-155 (504)
98 PF05621 TniB: Bacterial TniB 97.4 0.0038 8.3E-08 64.2 14.3 115 155-276 33-157 (302)
99 PRK08116 hypothetical protein; 97.4 0.00086 1.9E-08 69.5 9.8 102 180-302 115-221 (268)
100 PLN03025 replication factor C 97.4 0.00084 1.8E-08 72.0 10.1 122 156-301 13-138 (319)
101 PRK15386 type III secretion pr 97.4 0.00038 8.3E-09 74.8 7.0 55 541-601 49-104 (426)
102 KOG1947 Leucine rich repeat pr 97.3 6.7E-05 1.5E-09 85.8 1.2 239 492-778 187-441 (482)
103 PRK08727 hypothetical protein; 97.3 0.00045 9.8E-09 70.3 7.1 36 179-216 41-76 (233)
104 PRK08118 topology modulation p 97.3 9.9E-05 2.1E-09 70.8 1.9 36 180-215 2-38 (167)
105 KOG4579 Leucine-rich repeat (L 97.3 5.7E-05 1.2E-09 66.9 0.1 87 516-603 48-135 (177)
106 PRK00440 rfc replication facto 97.3 0.0015 3.2E-08 70.3 11.1 44 156-201 17-60 (319)
107 PRK14949 DNA polymerase III su 97.3 0.0012 2.5E-08 77.5 10.6 46 155-201 15-60 (944)
108 PRK14960 DNA polymerase III su 97.2 0.002 4.4E-08 73.2 11.5 46 155-201 14-59 (702)
109 COG3899 Predicted ATPase [Gene 97.2 0.0046 1E-07 74.5 14.7 259 157-426 1-356 (849)
110 COG3903 Predicted ATPase [Gene 97.2 0.00021 4.6E-09 75.4 3.0 156 178-345 13-193 (414)
111 PRK14958 DNA polymerase III su 97.2 0.003 6.4E-08 71.6 12.0 46 155-201 15-60 (509)
112 PRK03992 proteasome-activating 97.2 0.00097 2.1E-08 73.3 7.8 49 153-201 128-187 (389)
113 PRK05642 DNA replication initi 97.1 0.0012 2.7E-08 67.1 8.0 36 179-216 45-80 (234)
114 PRK14962 DNA polymerase III su 97.1 0.0031 6.6E-08 70.7 11.7 45 156-201 14-58 (472)
115 PRK10536 hypothetical protein; 97.1 0.0032 6.9E-08 63.5 10.3 57 154-214 53-109 (262)
116 PRK08691 DNA polymerase III su 97.1 0.0029 6.3E-08 72.6 11.2 46 155-201 15-60 (709)
117 PRK06645 DNA polymerase III su 97.1 0.0041 8.9E-08 70.0 12.3 46 155-201 20-65 (507)
118 PF00004 AAA: ATPase family as 97.1 0.00077 1.7E-08 61.8 5.6 21 182-202 1-21 (132)
119 KOG2028 ATPase related to the 97.1 0.0015 3.3E-08 67.2 7.9 117 153-302 141-261 (554)
120 PRK12377 putative replication 97.1 0.0025 5.4E-08 64.9 9.3 74 179-275 101-174 (248)
121 PF04665 Pox_A32: Poxvirus A32 97.1 0.001 2.2E-08 66.7 6.1 35 180-216 14-48 (241)
122 CHL00095 clpC Clp protease ATP 97.0 0.0018 3.9E-08 78.3 9.4 44 156-201 179-222 (821)
123 PRK08181 transposase; Validate 97.0 0.0032 7E-08 64.9 9.9 35 180-216 107-141 (269)
124 PRK08084 DNA replication initi 97.0 0.0018 3.8E-08 66.1 7.7 58 155-216 22-80 (235)
125 PRK14969 DNA polymerase III su 97.0 0.0065 1.4E-07 69.3 12.9 46 155-201 15-60 (527)
126 PRK14955 DNA polymerase III su 97.0 0.0046 1E-07 68.3 11.4 46 155-201 15-60 (397)
127 PRK08939 primosomal protein Dn 97.0 0.0066 1.4E-07 64.1 11.7 118 160-301 135-260 (306)
128 TIGR02397 dnaX_nterm DNA polym 96.9 0.0091 2E-07 65.3 13.1 46 155-201 13-58 (355)
129 PRK14964 DNA polymerase III su 96.9 0.0069 1.5E-07 67.7 11.8 128 155-306 12-161 (491)
130 PF05496 RuvB_N: Holliday junc 96.9 0.00099 2.1E-08 65.3 4.5 54 155-210 23-79 (233)
131 CHL00181 cbbX CbbX; Provisiona 96.9 0.0079 1.7E-07 63.1 11.6 46 156-201 23-81 (287)
132 PRK10865 protein disaggregatio 96.9 0.0032 6.8E-08 76.2 9.6 44 156-201 178-221 (857)
133 TIGR02639 ClpA ATP-dependent C 96.9 0.0029 6.4E-08 75.6 9.2 44 156-201 182-225 (731)
134 PF05673 DUF815: Protein of un 96.9 0.006 1.3E-07 60.8 9.7 122 153-306 24-155 (249)
135 PRK07940 DNA polymerase III su 96.9 0.0083 1.8E-07 65.6 11.7 46 156-201 5-58 (394)
136 PRK09361 radB DNA repair and r 96.9 0.0031 6.8E-08 64.0 8.0 101 168-274 12-117 (225)
137 PRK07994 DNA polymerase III su 96.9 0.0045 9.6E-08 71.4 10.0 46 155-201 15-60 (647)
138 KOG1644 U2-associated snRNP A' 96.9 0.00096 2.1E-08 63.4 3.8 107 522-648 43-151 (233)
139 cd01133 F1-ATPase_beta F1 ATP 96.9 0.0029 6.2E-08 64.8 7.5 101 179-283 69-183 (274)
140 COG5238 RNA1 Ran GTPase-activa 96.9 0.00024 5.2E-09 70.1 -0.2 241 492-751 29-314 (388)
141 PRK14951 DNA polymerase III su 96.9 0.0083 1.8E-07 69.0 12.0 46 155-201 15-60 (618)
142 TIGR03689 pup_AAA proteasome A 96.8 0.0061 1.3E-07 68.4 10.6 49 153-201 179-238 (512)
143 PF00308 Bac_DnaA: Bacterial d 96.8 0.0025 5.4E-08 64.1 6.8 122 157-302 10-140 (219)
144 TIGR02881 spore_V_K stage V sp 96.8 0.0039 8.5E-08 64.7 8.4 45 157-201 7-64 (261)
145 PTZ00454 26S protease regulato 96.8 0.0036 7.8E-08 68.6 8.3 49 153-201 142-201 (398)
146 PRK09087 hypothetical protein; 96.8 0.0068 1.5E-07 61.2 9.8 24 179-202 44-67 (226)
147 PRK12608 transcription termina 96.8 0.0033 7.2E-08 67.0 7.7 108 164-276 119-232 (380)
148 PRK07471 DNA polymerase III su 96.8 0.021 4.5E-07 61.9 14.0 47 154-201 17-63 (365)
149 PHA00729 NTP-binding motif con 96.8 0.0038 8.3E-08 61.9 7.4 33 167-201 7-39 (226)
150 PRK06526 transposase; Provisio 96.8 0.0012 2.5E-08 67.8 3.9 23 179-201 98-120 (254)
151 cd01393 recA_like RecA is a b 96.8 0.0095 2.1E-07 60.5 10.6 103 168-275 8-125 (226)
152 TIGR00678 holB DNA polymerase 96.8 0.018 4E-07 56.4 12.2 40 263-302 95-136 (188)
153 PRK14970 DNA polymerase III su 96.7 0.011 2.3E-07 65.0 11.6 45 156-201 17-61 (367)
154 TIGR02880 cbbX_cfxQ probable R 96.7 0.009 1.9E-07 62.7 10.4 45 157-201 23-80 (284)
155 TIGR03346 chaperone_ClpB ATP-d 96.7 0.0045 9.7E-08 75.2 9.2 44 156-201 173-216 (852)
156 PRK14956 DNA polymerase III su 96.7 0.0052 1.1E-07 67.9 8.7 46 155-201 17-62 (484)
157 PRK07261 topology modulation p 96.7 0.0036 7.7E-08 60.3 6.7 67 181-276 2-69 (171)
158 TIGR02639 ClpA ATP-dependent C 96.7 0.0031 6.7E-08 75.4 7.6 115 156-287 454-578 (731)
159 PRK05896 DNA polymerase III su 96.7 0.011 2.3E-07 67.3 11.2 46 155-201 15-60 (605)
160 PRK07952 DNA replication prote 96.7 0.0066 1.4E-07 61.7 8.6 95 164-280 84-180 (244)
161 PRK09112 DNA polymerase III su 96.7 0.018 4E-07 62.0 12.3 48 153-201 20-67 (351)
162 PRK14088 dnaA chromosomal repl 96.7 0.0082 1.8E-07 67.1 10.0 120 157-300 107-235 (440)
163 PRK08903 DnaA regulatory inact 96.6 0.0092 2E-07 60.6 9.4 44 159-202 22-65 (227)
164 cd01123 Rad51_DMC1_radA Rad51_ 96.6 0.0064 1.4E-07 62.1 8.3 104 169-275 9-126 (235)
165 PRK09183 transposase/IS protei 96.6 0.0025 5.5E-08 65.7 5.2 22 180-201 103-124 (259)
166 COG1484 DnaC DNA replication p 96.6 0.0031 6.6E-08 64.8 5.7 76 178-276 104-179 (254)
167 TIGR02237 recomb_radB DNA repa 96.6 0.0058 1.3E-07 61.2 7.6 97 172-274 5-107 (209)
168 smart00763 AAA_PrkA PrkA AAA d 96.6 0.0018 3.9E-08 68.6 4.0 58 157-214 52-118 (361)
169 PRK14954 DNA polymerase III su 96.6 0.013 2.9E-07 67.6 11.3 46 155-201 15-60 (620)
170 PRK06620 hypothetical protein; 96.6 0.0071 1.5E-07 60.5 7.9 49 154-202 15-67 (214)
171 COG1373 Predicted ATPase (AAA+ 96.6 0.0095 2.1E-07 65.5 9.6 96 181-306 39-135 (398)
172 PTZ00361 26 proteosome regulat 96.6 0.0056 1.2E-07 67.6 7.7 52 156-209 183-245 (438)
173 PF01695 IstB_IS21: IstB-like 96.5 0.0014 3E-08 63.4 2.6 36 179-216 47-82 (178)
174 PRK06921 hypothetical protein; 96.5 0.008 1.7E-07 62.2 8.3 36 179-216 117-153 (266)
175 PRK14952 DNA polymerase III su 96.5 0.025 5.4E-07 64.9 12.9 46 155-201 12-57 (584)
176 PRK14950 DNA polymerase III su 96.5 0.02 4.4E-07 66.5 12.4 135 155-301 15-159 (585)
177 TIGR00362 DnaA chromosomal rep 96.5 0.01 2.2E-07 66.1 9.5 121 157-301 112-241 (405)
178 PRK11034 clpA ATP-dependent Cl 96.5 0.0062 1.3E-07 72.1 8.1 44 156-201 186-229 (758)
179 KOG2123 Uncharacterized conser 96.5 0.00043 9.3E-09 68.7 -1.3 83 518-603 16-100 (388)
180 KOG2227 Pre-initiation complex 96.5 0.014 3.1E-07 62.7 9.6 117 154-276 148-268 (529)
181 TIGR03345 VI_ClpV1 type VI sec 96.5 0.0062 1.3E-07 73.5 8.0 46 156-201 566-618 (852)
182 COG1618 Predicted nucleotide k 96.5 0.0022 4.7E-08 58.8 3.1 40 179-220 5-45 (179)
183 TIGR03345 VI_ClpV1 type VI sec 96.5 0.006 1.3E-07 73.6 7.8 44 156-201 187-230 (852)
184 TIGR00763 lon ATP-dependent pr 96.5 0.0086 1.9E-07 72.1 9.1 52 156-209 320-375 (775)
185 PRK10865 protein disaggregatio 96.5 0.015 3.2E-07 70.6 11.0 46 156-201 568-620 (857)
186 PF13671 AAA_33: AAA domain; P 96.4 0.011 2.4E-07 54.9 8.1 21 181-201 1-21 (143)
187 PF13207 AAA_17: AAA domain; P 96.4 0.0018 3.8E-08 58.5 2.5 21 181-201 1-21 (121)
188 cd01120 RecA-like_NTPases RecA 96.4 0.01 2.2E-07 56.5 7.9 39 181-223 1-39 (165)
189 CHL00095 clpC Clp protease ATP 96.4 0.013 2.8E-07 71.1 10.4 132 156-301 509-661 (821)
190 TIGR00602 rad24 checkpoint pro 96.4 0.0073 1.6E-07 69.6 7.8 47 155-201 83-132 (637)
191 PRK09111 DNA polymerase III su 96.4 0.021 4.6E-07 65.8 11.5 46 155-201 23-68 (598)
192 PRK06835 DNA replication prote 96.4 0.0057 1.2E-07 65.1 6.4 35 180-216 184-218 (329)
193 PRK14953 DNA polymerase III su 96.4 0.032 7E-07 62.9 12.7 45 156-201 16-60 (486)
194 COG0466 Lon ATP-dependent Lon 96.4 0.0044 9.5E-08 69.9 5.6 53 155-209 322-378 (782)
195 PRK00149 dnaA chromosomal repl 96.4 0.013 2.8E-07 66.1 9.7 121 157-301 124-253 (450)
196 PRK13695 putative NTPase; Prov 96.4 0.0031 6.6E-08 61.1 4.0 34 181-216 2-36 (174)
197 PF07693 KAP_NTPase: KAP famil 96.4 0.065 1.4E-06 57.7 14.7 166 162-336 2-245 (325)
198 PRK05541 adenylylsulfate kinas 96.4 0.023 5E-07 55.1 10.0 37 178-216 6-42 (176)
199 cd03214 ABC_Iron-Siderophores_ 96.4 0.018 3.9E-07 56.1 9.3 123 179-305 25-161 (180)
200 TIGR03346 chaperone_ClpB ATP-d 96.4 0.019 4.2E-07 69.8 11.5 133 156-301 565-717 (852)
201 PRK07764 DNA polymerase III su 96.4 0.026 5.6E-07 67.4 12.2 45 156-201 15-59 (824)
202 KOG2004 Mitochondrial ATP-depe 96.4 0.011 2.4E-07 66.4 8.4 68 154-228 409-480 (906)
203 PRK10787 DNA-binding ATP-depen 96.4 0.007 1.5E-07 72.2 7.4 53 155-209 321-377 (784)
204 KOG2123 Uncharacterized conser 96.3 0.0006 1.3E-08 67.7 -1.4 99 492-597 18-123 (388)
205 TIGR02858 spore_III_AA stage I 96.3 0.05 1.1E-06 56.2 12.6 132 164-306 97-233 (270)
206 PRK14087 dnaA chromosomal repl 96.3 0.012 2.6E-07 65.8 8.3 123 157-301 117-248 (450)
207 PRK14959 DNA polymerase III su 96.2 0.032 6.9E-07 63.9 11.5 45 156-201 16-60 (624)
208 KOG2739 Leucine-rich acidic nu 96.2 0.0024 5.1E-08 63.5 1.9 87 515-604 37-129 (260)
209 cd01394 radB RadB. The archaea 96.2 0.023 5.1E-07 57.2 9.3 54 167-224 7-60 (218)
210 PRK07667 uridine kinase; Provi 96.2 0.0061 1.3E-07 60.1 4.7 37 165-201 3-39 (193)
211 PRK06696 uridine kinase; Valid 96.2 0.0059 1.3E-07 61.7 4.7 42 160-201 2-44 (223)
212 TIGR02238 recomb_DMC1 meiotic 96.1 0.019 4.1E-07 60.9 8.5 106 166-274 83-201 (313)
213 cd03247 ABCC_cytochrome_bd The 96.1 0.04 8.7E-07 53.5 10.1 120 179-306 28-161 (178)
214 PRK14971 DNA polymerase III su 96.1 0.051 1.1E-06 63.2 12.6 46 155-201 16-61 (614)
215 PRK11034 clpA ATP-dependent Cl 96.1 0.012 2.6E-07 69.7 7.5 115 156-287 458-582 (758)
216 PRK08451 DNA polymerase III su 96.1 0.059 1.3E-06 61.0 12.6 45 156-201 14-58 (535)
217 KOG1644 U2-associated snRNP A' 96.1 0.0063 1.4E-07 58.0 4.1 11 692-702 65-75 (233)
218 TIGR02012 tigrfam_recA protein 96.1 0.017 3.6E-07 61.0 7.7 100 166-274 41-143 (321)
219 PRK14965 DNA polymerase III su 96.1 0.048 1E-06 63.2 12.1 46 155-201 15-60 (576)
220 PRK12422 chromosomal replicati 96.1 0.011 2.5E-07 65.8 6.8 99 179-301 141-244 (445)
221 CHL00176 ftsH cell division pr 96.1 0.013 2.8E-07 68.1 7.3 48 154-201 181-238 (638)
222 PLN03187 meiotic recombination 96.0 0.029 6.3E-07 60.0 9.3 68 168-238 115-186 (344)
223 cd03216 ABC_Carb_Monos_I This 96.0 0.018 3.9E-07 55.0 7.1 115 179-305 26-145 (163)
224 PRK06305 DNA polymerase III su 96.0 0.044 9.4E-07 61.4 11.1 46 155-201 16-61 (451)
225 PRK14086 dnaA chromosomal repl 96.0 0.021 4.6E-07 65.0 8.6 120 158-301 291-419 (617)
226 PF13177 DNA_pol3_delta2: DNA 96.0 0.092 2E-06 50.0 11.8 120 160-303 1-143 (162)
227 COG0470 HolB ATPase involved i 96.0 0.062 1.3E-06 57.9 12.0 121 157-301 2-148 (325)
228 cd00983 recA RecA is a bacter 96.0 0.019 4E-07 60.7 7.3 99 167-274 42-143 (325)
229 PRK09354 recA recombinase A; P 95.9 0.023 5E-07 60.4 8.1 100 166-274 46-148 (349)
230 PF02562 PhoH: PhoH-like prote 95.9 0.017 3.7E-07 56.7 6.6 128 160-299 4-153 (205)
231 PRK15455 PrkA family serine pr 95.9 0.0068 1.5E-07 67.7 4.1 46 156-201 76-125 (644)
232 TIGR02239 recomb_RAD51 DNA rep 95.9 0.02 4.4E-07 60.8 7.6 71 165-238 82-156 (316)
233 PRK08233 hypothetical protein; 95.9 0.023 5E-07 55.3 7.6 23 179-201 3-25 (182)
234 COG0572 Udk Uridine kinase [Nu 95.9 0.016 3.6E-07 56.8 6.1 80 177-265 6-85 (218)
235 PRK05703 flhF flagellar biosyn 95.9 0.12 2.7E-06 57.3 13.8 38 179-216 221-258 (424)
236 PRK11889 flhF flagellar biosyn 95.9 0.1 2.2E-06 56.1 12.4 24 178-201 240-263 (436)
237 PLN03186 DNA repair protein RA 95.9 0.04 8.7E-07 59.0 9.6 71 165-238 109-183 (342)
238 TIGR01241 FtsH_fam ATP-depende 95.9 0.014 3.1E-07 66.5 6.7 50 153-202 52-111 (495)
239 PF08423 Rad51: Rad51; InterP 95.8 0.011 2.4E-07 60.9 5.0 105 167-274 26-143 (256)
240 PRK06002 fliI flagellum-specif 95.8 0.033 7.1E-07 61.2 8.9 93 179-276 165-266 (450)
241 PRK07133 DNA polymerase III su 95.8 0.058 1.3E-06 62.9 11.3 46 155-201 17-62 (725)
242 PRK06762 hypothetical protein; 95.8 0.031 6.7E-07 53.6 7.9 23 179-201 2-24 (166)
243 COG0468 RecA RecA/RadA recombi 95.8 0.043 9.3E-07 56.6 9.2 101 168-275 49-152 (279)
244 cd03238 ABC_UvrA The excision 95.8 0.046 1E-06 52.7 8.9 116 179-306 21-153 (176)
245 cd01131 PilT Pilus retraction 95.8 0.019 4.1E-07 56.8 6.4 112 180-306 2-113 (198)
246 TIGR02640 gas_vesic_GvpN gas v 95.8 0.067 1.5E-06 55.5 10.8 56 163-229 9-64 (262)
247 PRK04301 radA DNA repair and r 95.8 0.029 6.4E-07 60.0 8.3 69 166-237 89-161 (317)
248 PRK12727 flagellar biosynthesi 95.8 0.17 3.6E-06 56.7 14.1 23 179-201 350-372 (559)
249 PF00485 PRK: Phosphoribulokin 95.8 0.042 9E-07 54.2 8.6 82 181-267 1-86 (194)
250 COG0542 clpA ATP-binding subun 95.7 0.031 6.8E-07 65.0 8.5 117 156-289 491-620 (786)
251 TIGR01243 CDC48 AAA family ATP 95.7 0.023 4.9E-07 68.3 7.9 49 153-201 175-234 (733)
252 PRK05563 DNA polymerase III su 95.7 0.12 2.7E-06 59.5 13.5 46 155-201 15-60 (559)
253 CHL00195 ycf46 Ycf46; Provisio 95.7 0.23 5E-06 56.0 15.2 47 155-201 227-281 (489)
254 PRK09270 nucleoside triphospha 95.7 0.042 9.1E-07 55.8 8.7 26 176-201 30-55 (229)
255 PRK06647 DNA polymerase III su 95.7 0.11 2.3E-06 59.9 12.7 46 155-201 15-60 (563)
256 COG2255 RuvB Holliday junction 95.7 0.0092 2E-07 60.0 3.4 52 156-209 26-80 (332)
257 cd00267 ABC_ATPase ABC (ATP-bi 95.7 0.042 9E-07 52.1 7.9 115 179-306 25-144 (157)
258 PRK14948 DNA polymerase III su 95.7 0.1 2.3E-06 60.6 12.6 45 156-201 16-60 (620)
259 PRK04296 thymidine kinase; Pro 95.6 0.017 3.8E-07 56.6 5.4 113 180-303 3-117 (190)
260 PF14532 Sigma54_activ_2: Sigm 95.6 0.01 2.2E-07 55.0 3.4 44 159-202 1-44 (138)
261 COG1121 ZnuC ABC-type Mn/Zn tr 95.6 0.14 3E-06 51.8 11.4 126 179-306 30-203 (254)
262 TIGR02236 recomb_radA DNA repa 95.6 0.045 9.7E-07 58.5 8.6 67 168-237 84-154 (310)
263 COG4608 AppF ABC-type oligopep 95.5 0.058 1.3E-06 54.5 8.6 127 179-308 39-176 (268)
264 KOG4252 GTP-binding protein [S 95.5 0.018 4E-07 53.1 4.5 107 180-339 21-130 (246)
265 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.5 0.066 1.4E-06 49.9 8.5 103 179-306 26-131 (144)
266 KOG0991 Replication factor C, 95.5 0.034 7.5E-07 54.1 6.4 44 156-201 27-70 (333)
267 cd03228 ABCC_MRP_Like The MRP 95.5 0.052 1.1E-06 52.3 7.9 120 179-306 28-159 (171)
268 cd03246 ABCC_Protease_Secretio 95.4 0.046 1E-06 52.8 7.5 120 179-306 28-160 (173)
269 PRK08149 ATP synthase SpaL; Va 95.4 0.057 1.2E-06 59.2 8.9 92 179-276 151-253 (428)
270 TIGR00064 ftsY signal recognit 95.4 0.066 1.4E-06 55.6 9.0 93 177-275 70-165 (272)
271 cd03223 ABCD_peroxisomal_ALDP 95.4 0.097 2.1E-06 50.1 9.6 114 179-305 27-151 (166)
272 cd03222 ABC_RNaseL_inhibitor T 95.4 0.11 2.3E-06 50.3 9.8 103 179-306 25-136 (177)
273 COG1136 SalX ABC-type antimicr 95.4 0.13 2.9E-06 51.1 10.5 128 179-306 31-207 (226)
274 cd00561 CobA_CobO_BtuR ATP:cor 95.4 0.057 1.2E-06 50.7 7.6 120 180-302 3-138 (159)
275 PF13604 AAA_30: AAA domain; P 95.3 0.029 6.3E-07 55.4 5.7 114 164-297 5-126 (196)
276 PRK08972 fliI flagellum-specif 95.3 0.054 1.2E-06 59.3 8.2 99 179-283 162-272 (444)
277 PTZ00301 uridine kinase; Provi 95.3 0.015 3.2E-07 57.8 3.6 23 179-201 3-25 (210)
278 cd03230 ABC_DR_subfamily_A Thi 95.3 0.097 2.1E-06 50.5 9.3 119 179-306 26-159 (173)
279 TIGR01069 mutS2 MutS2 family p 95.3 0.07 1.5E-06 63.7 9.8 157 179-345 322-505 (771)
280 PRK07399 DNA polymerase III su 95.3 0.082 1.8E-06 56.2 9.3 45 156-201 4-48 (314)
281 cd03115 SRP The signal recogni 95.3 0.097 2.1E-06 50.5 9.1 21 181-201 2-22 (173)
282 PF13238 AAA_18: AAA domain; P 95.3 0.012 2.7E-07 53.4 2.7 20 182-201 1-20 (129)
283 PRK15429 formate hydrogenlyase 95.2 0.26 5.6E-06 58.9 14.4 48 155-202 375-422 (686)
284 PRK00771 signal recognition pa 95.2 0.1 2.2E-06 57.7 10.2 91 178-275 94-186 (437)
285 KOG2228 Origin recognition com 95.2 0.069 1.5E-06 55.1 7.9 143 155-302 23-182 (408)
286 KOG0733 Nuclear AAA ATPase (VC 95.2 0.063 1.4E-06 59.6 8.2 98 152-275 186-293 (802)
287 PRK11608 pspF phage shock prot 95.2 0.078 1.7E-06 56.9 9.0 46 156-201 6-51 (326)
288 TIGR01359 UMP_CMP_kin_fam UMP- 95.2 0.06 1.3E-06 52.5 7.5 21 181-201 1-21 (183)
289 TIGR03499 FlhF flagellar biosy 95.2 0.073 1.6E-06 55.8 8.4 39 178-216 193-231 (282)
290 PRK04040 adenylate kinase; Pro 95.2 0.052 1.1E-06 53.1 6.8 23 179-201 2-24 (188)
291 PRK05707 DNA polymerase III su 95.2 0.32 7E-06 52.0 13.4 40 264-303 106-147 (328)
292 PRK08927 fliI flagellum-specif 95.1 0.054 1.2E-06 59.5 7.6 100 178-283 157-268 (442)
293 PTZ00035 Rad51 protein; Provis 95.1 0.16 3.5E-06 54.5 11.1 70 166-238 105-178 (337)
294 KOG2739 Leucine-rich acidic nu 95.1 0.011 2.3E-07 59.0 1.9 91 684-775 58-154 (260)
295 PRK06547 hypothetical protein; 95.1 0.025 5.5E-07 54.3 4.4 26 177-202 13-38 (172)
296 PRK05480 uridine/cytidine kina 95.1 0.015 3.3E-07 58.1 3.1 24 178-201 5-28 (209)
297 cd01136 ATPase_flagellum-secre 95.1 0.098 2.1E-06 55.4 9.2 92 179-276 69-171 (326)
298 COG2884 FtsE Predicted ATPase 95.1 0.12 2.6E-06 49.1 8.6 124 179-306 28-201 (223)
299 COG1126 GlnQ ABC-type polar am 95.1 0.17 3.6E-06 49.3 9.8 124 179-306 28-200 (240)
300 PF00448 SRP54: SRP54-type pro 95.1 0.028 6E-07 55.3 4.8 55 179-238 1-57 (196)
301 COG4618 ArpD ABC-type protease 95.1 0.23 5E-06 54.4 11.8 23 179-201 362-384 (580)
302 PRK05022 anaerobic nitric oxid 95.1 0.25 5.5E-06 56.6 13.3 49 154-202 185-233 (509)
303 KOG0735 AAA+-type ATPase [Post 95.1 0.085 1.8E-06 59.6 8.8 96 156-275 408-505 (952)
304 cd03281 ABC_MSH5_euk MutS5 hom 95.1 0.022 4.8E-07 57.0 4.1 120 179-306 29-158 (213)
305 COG1875 NYN ribonuclease and A 95.1 0.06 1.3E-06 56.2 7.2 38 160-199 228-265 (436)
306 PF14516 AAA_35: AAA-like doma 95.1 0.41 8.9E-06 51.5 14.0 116 154-276 9-139 (331)
307 KOG1532 GTPase XAB1, interacts 95.0 0.075 1.6E-06 53.1 7.4 61 177-239 17-86 (366)
308 TIGR00235 udk uridine kinase. 95.0 0.017 3.8E-07 57.6 3.2 24 178-201 5-28 (207)
309 cd01121 Sms Sms (bacterial rad 95.0 0.097 2.1E-06 56.9 9.0 100 165-274 68-168 (372)
310 COG0593 DnaA ATPase involved i 95.0 0.076 1.6E-06 57.6 8.0 124 155-301 87-217 (408)
311 PF00560 LRR_1: Leucine Rich R 95.0 0.01 2.2E-07 35.3 0.8 18 570-587 2-19 (22)
312 PRK12597 F0F1 ATP synthase sub 95.0 0.06 1.3E-06 59.7 7.4 95 179-276 143-249 (461)
313 cd02025 PanK Pantothenate kina 95.0 0.074 1.6E-06 53.5 7.5 21 181-201 1-21 (220)
314 cd02019 NK Nucleoside/nucleoti 95.0 0.018 3.8E-07 46.0 2.4 21 181-201 1-21 (69)
315 KOG0734 AAA+-type ATPase conta 94.9 0.12 2.7E-06 56.4 9.2 52 152-203 300-361 (752)
316 PF00560 LRR_1: Leucine Rich R 94.9 0.012 2.7E-07 34.9 1.0 19 523-541 2-20 (22)
317 cd03215 ABC_Carb_Monos_II This 94.9 0.11 2.4E-06 50.6 8.4 24 179-202 26-49 (182)
318 PRK10867 signal recognition pa 94.9 0.096 2.1E-06 57.8 8.6 91 178-274 99-193 (433)
319 cd03229 ABC_Class3 This class 94.8 0.061 1.3E-06 52.2 6.4 34 179-215 26-59 (178)
320 TIGR02974 phageshock_pspF psp 94.8 0.11 2.3E-06 55.8 8.7 45 158-202 1-45 (329)
321 PRK06067 flagellar accessory p 94.8 0.099 2.1E-06 53.3 8.1 102 166-274 12-130 (234)
322 cd02027 APSK Adenosine 5'-phos 94.8 0.17 3.8E-06 47.4 9.1 21 181-201 1-21 (149)
323 cd01132 F1_ATPase_alpha F1 ATP 94.8 0.12 2.5E-06 53.1 8.3 102 179-286 69-184 (274)
324 TIGR01817 nifA Nif-specific re 94.8 0.14 3E-06 59.3 10.1 49 154-202 194-242 (534)
325 cd01135 V_A-ATPase_B V/A-type 94.7 0.13 2.8E-06 52.8 8.5 104 179-284 69-187 (276)
326 PRK14722 flhF flagellar biosyn 94.7 0.19 4.1E-06 54.3 10.3 88 179-276 137-227 (374)
327 PLN00020 ribulose bisphosphate 94.7 0.07 1.5E-06 56.5 6.6 31 177-209 146-176 (413)
328 PRK14723 flhF flagellar biosyn 94.7 0.2 4.3E-06 58.8 10.9 87 179-274 185-273 (767)
329 PRK07594 type III secretion sy 94.7 0.11 2.3E-06 57.2 8.3 99 179-283 155-265 (433)
330 PRK12723 flagellar biosynthesi 94.7 0.45 9.7E-06 51.9 13.0 89 178-275 173-265 (388)
331 PF13306 LRR_5: Leucine rich r 94.6 0.055 1.2E-06 49.2 5.2 82 515-599 6-89 (129)
332 PRK08058 DNA polymerase III su 94.6 0.28 6E-06 52.8 11.3 44 157-201 6-50 (329)
333 PRK14974 cell division protein 94.6 0.2 4.4E-06 53.4 10.0 91 178-276 139-234 (336)
334 TIGR00390 hslU ATP-dependent p 94.6 0.081 1.8E-06 57.3 7.0 77 156-236 12-104 (441)
335 PRK09099 type III secretion sy 94.6 0.095 2.1E-06 57.8 7.7 94 178-276 162-265 (441)
336 TIGR00150 HI0065_YjeE ATPase, 94.6 0.043 9.3E-07 49.8 4.2 40 163-202 6-45 (133)
337 PRK05922 type III secretion sy 94.6 0.16 3.4E-06 55.9 9.3 99 179-283 157-267 (434)
338 PF12061 DUF3542: Protein of u 94.6 0.065 1.4E-06 54.4 5.7 76 5-93 298-374 (402)
339 TIGR03498 FliI_clade3 flagella 94.6 0.078 1.7E-06 58.2 7.0 93 179-276 140-242 (418)
340 PRK09280 F0F1 ATP synthase sub 94.6 0.083 1.8E-06 58.4 7.1 102 179-283 144-258 (463)
341 COG2607 Predicted ATPase (AAA+ 94.6 0.2 4.3E-06 49.5 8.8 114 154-301 58-182 (287)
342 TIGR00959 ffh signal recogniti 94.5 0.29 6.3E-06 54.1 11.3 91 178-274 98-192 (428)
343 KOG0989 Replication factor C, 94.5 0.16 3.5E-06 51.9 8.4 125 156-299 36-166 (346)
344 COG3640 CooC CO dehydrogenase 94.5 0.047 1E-06 53.6 4.4 43 181-226 2-44 (255)
345 KOG1514 Origin recognition com 94.5 0.37 7.9E-06 54.8 11.9 134 156-299 396-546 (767)
346 smart00534 MUTSac ATPase domai 94.5 0.046 1E-06 53.4 4.5 117 181-306 1-126 (185)
347 PF00006 ATP-synt_ab: ATP synt 94.4 0.062 1.3E-06 53.5 5.4 88 180-275 16-116 (215)
348 PRK05688 fliI flagellum-specif 94.4 0.16 3.5E-06 56.0 9.0 99 179-283 168-278 (451)
349 PRK03839 putative kinase; Prov 94.4 0.025 5.5E-07 55.0 2.5 21 181-201 2-22 (180)
350 PRK12678 transcription termina 94.4 0.063 1.4E-06 60.0 5.8 103 167-276 405-515 (672)
351 TIGR03877 thermo_KaiC_1 KaiC d 94.4 0.18 4E-06 51.4 8.9 61 166-232 8-68 (237)
352 cd03278 ABC_SMC_barmotin Barmo 94.4 0.32 6.9E-06 48.0 10.3 20 181-200 24-43 (197)
353 TIGR03574 selen_PSTK L-seryl-t 94.3 0.14 3E-06 52.7 8.0 21 181-201 1-21 (249)
354 COG1428 Deoxynucleoside kinase 94.3 0.026 5.7E-07 54.6 2.4 24 179-202 4-27 (216)
355 cd02021 GntK Gluconate kinase 94.3 0.32 7E-06 45.5 9.9 22 181-202 1-22 (150)
356 TIGR01243 CDC48 AAA family ATP 94.3 0.17 3.6E-06 61.0 9.7 48 154-201 451-509 (733)
357 cd03285 ABC_MSH2_euk MutS2 hom 94.3 0.068 1.5E-06 53.8 5.4 119 178-306 29-157 (222)
358 cd03243 ABC_MutS_homologs The 94.3 0.029 6.3E-07 55.8 2.7 22 180-201 30-51 (202)
359 PRK06793 fliI flagellum-specif 94.2 0.45 9.8E-06 52.4 11.9 121 179-306 156-290 (432)
360 COG0003 ArsA Predicted ATPase 94.2 0.049 1.1E-06 57.5 4.3 49 179-231 2-50 (322)
361 TIGR01360 aden_kin_iso1 adenyl 94.2 0.035 7.5E-07 54.4 3.1 24 178-201 2-25 (188)
362 cd03282 ABC_MSH4_euk MutS4 hom 94.2 0.055 1.2E-06 53.6 4.5 120 179-308 29-157 (204)
363 TIGR03497 FliI_clade2 flagella 94.2 0.12 2.6E-06 56.8 7.4 100 178-283 136-247 (413)
364 PF07726 AAA_3: ATPase family 94.2 0.025 5.5E-07 50.4 1.8 28 182-211 2-29 (131)
365 PRK12724 flagellar biosynthesi 94.2 0.21 4.5E-06 54.4 9.1 23 179-201 223-245 (432)
366 PF07724 AAA_2: AAA domain (Cd 94.2 0.027 6E-07 54.0 2.2 36 179-216 3-39 (171)
367 cd03369 ABCC_NFT1 Domain 2 of 94.2 0.49 1.1E-05 47.1 11.3 23 179-201 34-56 (207)
368 PF12775 AAA_7: P-loop contain 94.2 0.097 2.1E-06 54.4 6.4 90 165-275 22-111 (272)
369 PRK00625 shikimate kinase; Pro 94.2 0.03 6.5E-07 53.8 2.4 21 181-201 2-22 (173)
370 cd02023 UMPK Uridine monophosp 94.2 0.027 5.8E-07 55.8 2.1 21 181-201 1-21 (198)
371 PRK13531 regulatory ATPase Rav 94.2 0.049 1.1E-06 60.2 4.3 42 156-201 20-61 (498)
372 TIGR01040 V-ATPase_V1_B V-type 94.2 0.13 2.9E-06 56.4 7.5 104 179-284 141-268 (466)
373 PRK05201 hslU ATP-dependent pr 94.1 0.095 2.1E-06 56.8 6.3 78 155-236 14-107 (443)
374 cd03213 ABCG_EPDR ABCG transpo 94.1 0.22 4.8E-06 49.0 8.6 24 179-202 35-58 (194)
375 KOG0729 26S proteasome regulat 94.1 0.41 8.8E-06 47.7 10.0 95 153-274 174-280 (435)
376 PRK07721 fliI flagellum-specif 94.1 0.19 4.1E-06 55.7 8.9 93 178-275 157-259 (438)
377 cd03217 ABC_FeS_Assembly ABC-t 94.1 0.21 4.5E-06 49.5 8.4 24 179-202 26-49 (200)
378 PLN02318 phosphoribulokinase/u 94.1 0.061 1.3E-06 60.6 4.9 34 168-201 54-87 (656)
379 PTZ00185 ATPase alpha subunit; 94.1 0.28 6E-06 54.4 9.7 96 179-276 189-301 (574)
380 TIGR03881 KaiC_arch_4 KaiC dom 94.1 0.3 6.5E-06 49.5 9.7 48 167-216 8-55 (229)
381 PRK14721 flhF flagellar biosyn 94.1 0.47 1E-05 52.1 11.7 23 179-201 191-213 (420)
382 PRK05439 pantothenate kinase; 94.0 0.22 4.7E-06 52.5 8.6 82 176-265 83-166 (311)
383 COG0542 clpA ATP-binding subun 94.0 0.055 1.2E-06 63.1 4.5 103 155-275 169-273 (786)
384 TIGR00554 panK_bact pantothena 94.0 0.12 2.7E-06 53.8 6.8 25 177-201 60-84 (290)
385 cd01122 GP4d_helicase GP4d_hel 94.0 0.39 8.4E-06 50.2 10.7 53 179-237 30-83 (271)
386 PRK06217 hypothetical protein; 94.0 0.096 2.1E-06 51.1 5.7 23 180-202 2-24 (183)
387 TIGR03496 FliI_clade1 flagella 94.0 0.18 3.9E-06 55.4 8.3 99 179-283 137-247 (411)
388 PRK06936 type III secretion sy 94.0 0.19 4E-06 55.3 8.3 99 179-283 162-272 (439)
389 cd03236 ABC_RNaseL_inhibitor_d 94.0 0.33 7.1E-06 50.1 9.8 24 179-202 26-49 (255)
390 PF03308 ArgK: ArgK protein; 94.0 0.041 9E-07 55.3 2.9 66 164-231 14-79 (266)
391 PF00154 RecA: recA bacterial 93.9 0.15 3.2E-06 53.8 7.2 114 167-289 40-156 (322)
392 COG1116 TauB ABC-type nitrate/ 93.9 0.36 7.9E-06 48.3 9.5 23 179-201 29-51 (248)
393 cd01129 PulE-GspE PulE/GspE Th 93.9 0.29 6.3E-06 50.7 9.3 127 159-306 62-188 (264)
394 COG1703 ArgK Putative periplas 93.9 0.055 1.2E-06 55.1 3.7 69 165-235 37-105 (323)
395 PRK10733 hflB ATP-dependent me 93.9 0.13 2.8E-06 60.5 7.5 52 156-209 152-213 (644)
396 cd02024 NRK1 Nicotinamide ribo 93.9 0.033 7.2E-07 54.1 2.1 22 181-202 1-22 (187)
397 TIGR03305 alt_F1F0_F1_bet alte 93.9 0.12 2.7E-06 56.9 6.6 103 179-284 138-253 (449)
398 PRK12726 flagellar biosynthesi 93.8 0.23 5E-06 53.3 8.4 89 178-275 205-296 (407)
399 PF00158 Sigma54_activat: Sigm 93.8 0.18 3.8E-06 48.3 6.9 45 158-202 1-45 (168)
400 TIGR02322 phosphon_PhnN phosph 93.8 0.043 9.2E-07 53.4 2.8 23 180-202 2-24 (179)
401 PRK07196 fliI flagellum-specif 93.8 0.21 4.6E-06 55.0 8.2 100 178-283 154-265 (434)
402 KOG1969 DNA replication checkp 93.7 0.16 3.5E-06 57.7 7.3 73 178-276 325-399 (877)
403 TIGR00455 apsK adenylylsulfate 93.7 0.47 1E-05 46.3 9.9 24 178-201 17-40 (184)
404 TIGR03522 GldA_ABC_ATP gliding 93.7 0.28 6E-06 52.1 8.9 24 179-202 28-51 (301)
405 PRK14738 gmk guanylate kinase; 93.7 0.053 1.1E-06 54.0 3.2 31 171-201 5-35 (206)
406 PF01583 APS_kinase: Adenylyls 93.7 0.063 1.4E-06 50.2 3.5 36 179-216 2-37 (156)
407 PRK10751 molybdopterin-guanine 93.7 0.068 1.5E-06 51.0 3.8 24 178-201 5-28 (173)
408 PRK09519 recA DNA recombinatio 93.7 0.23 5E-06 58.5 8.8 100 166-274 46-148 (790)
409 TIGR01026 fliI_yscN ATPase Fli 93.7 0.17 3.7E-06 56.1 7.4 24 179-202 163-186 (440)
410 cd02028 UMPK_like Uridine mono 93.6 0.05 1.1E-06 52.8 2.9 21 181-201 1-21 (179)
411 COG2019 AdkA Archaeal adenylat 93.6 0.056 1.2E-06 50.0 3.0 23 179-201 4-26 (189)
412 PRK08472 fliI flagellum-specif 93.6 0.2 4.3E-06 55.2 7.7 97 179-284 157-267 (434)
413 COG1124 DppF ABC-type dipeptid 93.6 0.082 1.8E-06 52.4 4.3 23 179-201 33-55 (252)
414 TIGR03263 guanyl_kin guanylate 93.6 0.052 1.1E-06 52.8 3.0 22 180-201 2-23 (180)
415 TIGR01041 ATP_syn_B_arch ATP s 93.6 0.19 4.2E-06 55.8 7.7 104 179-284 141-259 (458)
416 PRK00131 aroK shikimate kinase 93.6 0.047 1E-06 52.7 2.7 23 179-201 4-26 (175)
417 cd03284 ABC_MutS1 MutS1 homolo 93.6 0.93 2E-05 45.4 12.0 22 180-201 31-52 (216)
418 PRK08533 flagellar accessory p 93.6 0.25 5.4E-06 50.1 7.9 59 168-232 13-71 (230)
419 TIGR01425 SRP54_euk signal rec 93.6 0.28 6E-06 54.0 8.7 37 178-216 99-135 (429)
420 PF08433 KTI12: Chromatin asso 93.6 0.1 2.3E-06 54.0 5.2 21 181-201 3-23 (270)
421 PTZ00088 adenylate kinase 1; P 93.6 0.079 1.7E-06 53.4 4.2 21 181-201 8-28 (229)
422 cd00071 GMPK Guanosine monopho 93.5 0.056 1.2E-06 49.9 2.9 21 181-201 1-21 (137)
423 PF00625 Guanylate_kin: Guanyl 93.5 0.069 1.5E-06 52.1 3.7 36 179-216 2-37 (183)
424 PRK00409 recombination and DNA 93.5 0.92 2E-05 54.5 13.7 158 178-345 326-510 (782)
425 COG2842 Uncharacterized ATPase 93.5 0.59 1.3E-05 47.9 10.2 120 155-289 71-192 (297)
426 KOG1051 Chaperone HSP104 and r 93.5 0.34 7.5E-06 57.5 9.8 114 157-287 563-685 (898)
427 TIGR01313 therm_gnt_kin carboh 93.5 0.43 9.4E-06 45.4 9.1 20 182-201 1-20 (163)
428 TIGR01039 atpD ATP synthase, F 93.4 0.21 4.5E-06 55.1 7.5 102 179-283 143-257 (461)
429 COG1120 FepC ABC-type cobalami 93.4 0.1 2.2E-06 53.0 4.7 35 179-216 28-62 (258)
430 COG0488 Uup ATPase components 93.4 1 2.2E-05 51.4 13.2 126 179-306 348-500 (530)
431 COG1936 Predicted nucleotide k 93.4 0.054 1.2E-06 50.7 2.5 20 181-200 2-21 (180)
432 TIGR03575 selen_PSTK_euk L-ser 93.4 0.48 1E-05 50.6 10.0 20 182-201 2-21 (340)
433 PRK13947 shikimate kinase; Pro 93.4 0.05 1.1E-06 52.4 2.4 21 181-201 3-23 (171)
434 COG0396 sufC Cysteine desulfur 93.4 0.51 1.1E-05 46.4 9.1 56 251-306 149-208 (251)
435 PRK04328 hypothetical protein; 93.3 0.26 5.6E-06 50.7 7.7 52 167-222 11-62 (249)
436 PRK11823 DNA repair protein Ra 93.3 0.32 7E-06 54.4 9.0 101 164-274 65-166 (446)
437 PRK00889 adenylylsulfate kinas 93.3 0.073 1.6E-06 51.5 3.4 23 179-201 4-26 (175)
438 TIGR01420 pilT_fam pilus retra 93.3 0.18 3.9E-06 54.6 6.7 113 179-306 122-234 (343)
439 cd01130 VirB11-like_ATPase Typ 93.3 0.081 1.7E-06 51.8 3.7 110 163-285 12-121 (186)
440 PRK13949 shikimate kinase; Pro 93.2 0.057 1.2E-06 51.8 2.5 21 181-201 3-23 (169)
441 PF07728 AAA_5: AAA domain (dy 93.2 0.13 2.8E-06 47.5 4.9 76 182-276 2-77 (139)
442 KOG0473 Leucine-rich repeat pr 93.2 0.004 8.7E-08 60.4 -5.3 90 514-604 35-124 (326)
443 cd02029 PRK_like Phosphoribulo 93.2 0.28 6E-06 50.0 7.4 81 181-264 1-84 (277)
444 TIGR02546 III_secr_ATP type II 93.2 0.39 8.5E-06 53.2 9.3 92 179-276 145-247 (422)
445 cd02020 CMPK Cytidine monophos 93.2 0.056 1.2E-06 50.4 2.4 21 181-201 1-21 (147)
446 cd04159 Arl10_like Arl10-like 93.2 0.3 6.6E-06 45.7 7.6 21 182-202 2-22 (159)
447 TIGR02788 VirB11 P-type DNA tr 93.2 0.16 3.5E-06 54.0 6.1 114 179-306 144-257 (308)
448 TIGR00416 sms DNA repair prote 93.1 0.37 7.9E-06 54.1 9.1 54 161-216 76-129 (454)
449 PF03205 MobB: Molybdopterin g 93.1 0.061 1.3E-06 49.7 2.5 35 180-216 1-36 (140)
450 PRK06820 type III secretion sy 93.1 0.19 4.1E-06 55.4 6.7 24 179-202 163-186 (440)
451 PRK07960 fliI flagellum-specif 93.1 0.21 4.7E-06 54.9 7.0 24 179-202 175-198 (455)
452 PF00910 RNA_helicase: RNA hel 93.1 0.059 1.3E-06 47.3 2.2 20 182-201 1-20 (107)
453 PF08477 Miro: Miro-like prote 93.1 0.064 1.4E-06 47.9 2.5 22 182-203 2-23 (119)
454 cd01672 TMPK Thymidine monopho 93.1 0.14 3.1E-06 50.5 5.2 22 180-201 1-22 (200)
455 TIGR01287 nifH nitrogenase iro 93.1 0.061 1.3E-06 56.4 2.6 22 180-201 1-22 (275)
456 PRK13545 tagH teichoic acids e 93.0 0.71 1.5E-05 52.0 11.0 24 179-202 50-73 (549)
457 PRK10078 ribose 1,5-bisphospho 93.0 0.072 1.6E-06 52.1 3.0 23 180-202 3-25 (186)
458 PRK15439 autoinducer 2 ABC tra 93.0 0.8 1.7E-05 52.7 11.9 24 179-202 37-60 (510)
459 COG1131 CcmA ABC-type multidru 93.0 1.2 2.6E-05 47.0 12.2 24 179-202 31-54 (293)
460 PRK03846 adenylylsulfate kinas 93.0 0.085 1.8E-06 52.2 3.4 24 178-201 23-46 (198)
461 cd00227 CPT Chloramphenicol (C 93.0 0.07 1.5E-06 51.6 2.7 22 180-201 3-24 (175)
462 KOG3864 Uncharacterized conser 92.9 0.018 3.9E-07 55.1 -1.4 62 738-799 123-187 (221)
463 COG0467 RAD55 RecA-superfamily 92.9 0.11 2.4E-06 53.9 4.4 54 174-233 18-71 (260)
464 TIGR00176 mobB molybdopterin-g 92.9 0.09 2E-06 49.6 3.3 32 181-214 1-33 (155)
465 TIGR00764 lon_rel lon-related 92.9 0.2 4.3E-06 58.4 6.8 75 155-238 17-92 (608)
466 cd02117 NifH_like This family 92.9 0.071 1.5E-06 53.4 2.8 22 180-201 1-22 (212)
467 PF13306 LRR_5: Leucine rich r 92.9 0.2 4.3E-06 45.4 5.6 100 492-600 11-112 (129)
468 PRK00300 gmk guanylate kinase; 92.9 0.07 1.5E-06 53.1 2.7 24 179-202 5-28 (205)
469 PRK15064 ABC transporter ATP-b 92.9 0.88 1.9E-05 52.6 12.1 24 179-202 27-50 (530)
470 PRK10820 DNA-binding transcrip 92.9 0.38 8.3E-06 55.2 9.0 47 155-201 203-249 (520)
471 KOG3864 Uncharacterized conser 92.8 0.0075 1.6E-07 57.6 -4.1 87 692-778 102-190 (221)
472 PRK15453 phosphoribulokinase; 92.8 0.44 9.6E-06 49.0 8.2 84 178-263 4-89 (290)
473 PRK13230 nitrogenase reductase 92.8 0.076 1.6E-06 55.8 2.9 22 180-201 2-23 (279)
474 CHL00059 atpA ATP synthase CF1 92.8 0.44 9.6E-06 52.9 8.8 99 179-283 141-253 (485)
475 COG0194 Gmk Guanylate kinase [ 92.7 0.14 3E-06 48.7 4.1 25 179-203 4-28 (191)
476 PRK10463 hydrogenase nickel in 92.7 0.2 4.3E-06 51.9 5.7 91 177-275 102-195 (290)
477 COG1102 Cmk Cytidylate kinase 92.7 0.082 1.8E-06 48.8 2.5 43 181-238 2-44 (179)
478 PRK13975 thymidylate kinase; P 92.6 0.081 1.8E-06 52.2 2.8 22 180-201 3-24 (196)
479 cd00820 PEPCK_HprK Phosphoenol 92.6 0.1 2.2E-06 45.3 3.0 22 179-200 15-36 (107)
480 KOG0741 AAA+-type ATPase [Post 92.6 0.69 1.5E-05 50.8 9.7 76 178-282 537-616 (744)
481 KOG0744 AAA+-type ATPase [Post 92.6 0.28 6E-06 50.5 6.4 81 179-275 177-261 (423)
482 PF08298 AAA_PrkA: PrkA AAA do 92.6 0.14 3.1E-06 54.0 4.5 47 155-201 60-110 (358)
483 PF13504 LRR_7: Leucine rich r 92.6 0.068 1.5E-06 29.4 1.2 15 569-583 2-16 (17)
484 PRK13232 nifH nitrogenase redu 92.6 0.082 1.8E-06 55.3 2.8 22 180-201 2-23 (273)
485 COG4088 Predicted nucleotide k 92.6 0.11 2.3E-06 49.9 3.2 27 180-208 2-28 (261)
486 COG0237 CoaE Dephospho-CoA kin 92.5 0.097 2.1E-06 51.4 3.0 23 179-201 2-24 (201)
487 PRK10416 signal recognition pa 92.5 0.48 1E-05 50.4 8.4 24 178-201 113-136 (318)
488 COG0464 SpoVK ATPases of the A 92.5 0.25 5.4E-06 56.6 6.8 94 156-275 242-346 (494)
489 PRK05057 aroK shikimate kinase 92.5 0.09 2E-06 50.6 2.7 23 179-201 4-26 (172)
490 PF00005 ABC_tran: ABC transpo 92.5 0.1 2.3E-06 48.0 3.1 23 180-202 12-34 (137)
491 cd01134 V_A-ATPase_A V/A-type 92.4 0.45 9.7E-06 50.4 7.9 100 179-284 157-275 (369)
492 PRK11388 DNA-binding transcrip 92.4 0.43 9.4E-06 56.6 9.0 48 155-202 324-371 (638)
493 PRK09435 membrane ATPase/prote 92.4 0.18 3.9E-06 53.7 5.1 37 165-201 42-78 (332)
494 COG0125 Tmk Thymidylate kinase 92.4 0.3 6.5E-06 48.3 6.3 36 179-216 3-38 (208)
495 TIGR03324 alt_F1F0_F1_al alter 92.4 0.51 1.1E-05 52.7 8.7 99 179-283 162-274 (497)
496 COG1100 GTPase SAR1 and relate 92.4 0.092 2E-06 52.8 2.8 23 180-202 6-28 (219)
497 PF06068 TIP49: TIP49 C-termin 92.4 0.35 7.7E-06 51.3 7.0 59 155-215 23-84 (398)
498 PRK13765 ATP-dependent proteas 92.4 0.21 4.5E-06 58.0 6.0 75 155-238 30-105 (637)
499 PRK06995 flhF flagellar biosyn 92.3 0.43 9.3E-06 53.4 8.1 38 179-216 256-293 (484)
500 TIGR03600 phage_DnaB phage rep 92.3 2 4.3E-05 48.1 13.6 75 158-238 174-248 (421)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-86 Score=770.75 Aligned_cols=751 Identities=25% Similarity=0.335 Sum_probs=558.6
Q ss_pred CcchHHHHHHHHHHhhcccccccchhchHHHHHHHHHHHHHHHHHccccchhhHHHhhhcccc-ccCChhHHHHHHHHHH
Q 003387 1 MHINFRLFSERLRRVLAGEEVTLPDAAKQPIQNLHAEVEIVTSWLSEFEDDISLLLFEKMAEE-ESHDPDLATVMDEINW 79 (824)
Q Consensus 1 ~~~~~~~~~~kl~~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~~~~~~~~~~~~~~a~~-~~~~~~~~~wl~~l~~ 79 (824)
|+.-++..++|+.+++. +++..+.+.++.+..|+++|..++.+++| |+. +.....+..|...+++
T Consensus 1 ~~~~~s~~~~~~~~~l~-~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d-------------~~a~~~~~~~~~~~~e~~~~ 66 (889)
T KOG4658|consen 1 MGACVSFGVEKLDQLLN-RESECLDGKDNYILELKENLKALQSALED-------------LDAKRDDLERRVNWEEDVGD 66 (889)
T ss_pred CCeEEEEehhhHHHHHH-HHHHHHhchHHHHHHHHHHHHHHHHHHHH-------------HHhhcchHHHHHHHHHHHHH
Confidence 56667778899999999 99999999999999999999999999999 999 7778899999999999
Q ss_pred HhhhhHHHHHHhHHhhcccccc---------------CcchHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCc-cc
Q 003387 80 FTYESEKVIDTFINSITQQKTQ---------------SSCSKDIFDALQGLQSRITDIKQRMQQLKHMDSKIIDRIK-TS 143 (824)
Q Consensus 80 ~~~~~ed~ld~~~~~~~~~~~~---------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 143 (824)
++|++||.++.|..+....+.. ..++.+.+..+..+.+++.++.+..+.|+ ........+. ..
T Consensus 67 ~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~-~~~~~~~~~~~~~ 145 (889)
T KOG4658|consen 67 LVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLG-SKGVFEVVGESLD 145 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhc-cccceeccccccc
Confidence 9999999999999877654221 13344777888888999999988888887 4331111111 11
Q ss_pred ccc-cCCCCCCCCCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCcc-ccCCCceeEEEECCCCC
Q 003387 144 KAE-AGISSSSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSY-VKHYFDCHAWITEPYSN 221 (824)
Q Consensus 144 ~~~-~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~-~~~~F~~~~wv~~~vs~ 221 (824)
.+. +++.+...... ||.+..++++++.|.+++. .++||+||||+||||||+.++|+.. ++.+||.++||+ ||+
T Consensus 146 ~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~--VSk 220 (889)
T KOG4658|consen 146 PREKVETRPIQSESD-VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV--VSK 220 (889)
T ss_pred chhhcccCCCCcccc-ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE--Ecc
Confidence 111 45555555555 9999999999999998874 9999999999999999999999987 999999999999 999
Q ss_pred CCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHhcCCCeEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEech
Q 003387 222 EYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWSIDMWDVIQEILPDNQNGSRVLITLTD 301 (824)
Q Consensus 222 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~ 301 (824)
.|+..+++++|++.++..... ......++++..|.+.|++|||+|||||||+..+|+.++.|+|...+||||++|||+
T Consensus 221 ~f~~~~iq~~Il~~l~~~~~~--~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs 298 (889)
T KOG4658|consen 221 EFTTRKIQQTILERLGLLDEE--WEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRS 298 (889)
T ss_pred cccHHhHHHHHHHHhccCCcc--cchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEecc
Confidence 999999999999999884432 233345899999999999999999999999999999999999999999999999999
Q ss_pred HHHHh---------------------hcccccCC---cCcCccccchhhHHHhcCCCchhHHHHHhHHH-------hhhh
Q 003387 302 IRIII---------------------SFQFEDGE---NMRLDLVPTGGPLRATYKGRPFLILYHGSISL-------EENI 350 (824)
Q Consensus 302 ~~v~~---------------------~f~~~~~~---~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~-------~~~~ 350 (824)
+.||. +|....+. ...+.+.++|++|+++|+|+|||++++|+.|. |+..
T Consensus 299 ~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~ 378 (889)
T KOG4658|consen 299 EEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRA 378 (889)
T ss_pred HhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99998 55554431 22344899999999999999999999999992 3322
Q ss_pred hhhc--------cCCC-cccccccc---cCCCCchHHHhHhccCCCCceechhHHHHHHHHcCCCCC-----ChHHHHHH
Q 003387 351 REAV--------ETPL-GLRYIKCL---MLPFCLKPCFIYLSVFPAHQEISTRQLYQLWIAEGFIPD-----NSEATAES 413 (824)
Q Consensus 351 ~~~~--------~~~~-~~~~~l~~---~L~~~lk~cfl~~s~fp~~~~i~~~~Li~~W~a~g~i~~-----~~e~~~~~ 413 (824)
...+ .... .++++|++ +||+++|.||+|||+||+||.|+++.||.+|+||||+.+ ++++.|++
T Consensus 379 ~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~ 458 (889)
T KOG4658|consen 379 LNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYD 458 (889)
T ss_pred HccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHH
Confidence 2222 1123 78899988 999999999999999999999999999999999999977 77899999
Q ss_pred HHHHHHhccccceeecCCCCcEEEEEcCccHHHHHHhhcc-cE-----EEccCC---CCCCCCCCCCCeeEEEEEecCCC
Q 003387 414 YLEQLIKEGFVEAKKRKAGGTINTCSIPGRWRPVLHTVPY-MV-----EFICSP---FMDPKGKSPKKAKRLNAVEREGD 484 (824)
Q Consensus 414 ~~~~Lv~rsllq~~~~~~~g~~~~~~mHdlv~dla~~~~~-~~-----~~~~~~---~~~~~~~~~~~~r~lsl~~~~~~ 484 (824)
|+++|+++||++..... ++..+|+|||++||+|.++|. +. .++... ........+..+||++++ ++..
T Consensus 459 ~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~-~~~~ 535 (889)
T KOG4658|consen 459 YIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLM-NNKI 535 (889)
T ss_pred HHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEe-ccch
Confidence 99999999999988744 567899999999999999991 11 222221 111122355678999999 7777
Q ss_pred ccccccc-CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCcc-CccCCccCCCCCcceEEeecCCCCCccChh
Q 003387 485 FACLDDY-DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLV-LIQYPSGIENLFLLRYLKLNIPSLNSLPSS 562 (824)
Q Consensus 485 ~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~-i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~ 562 (824)
..++... +++++||.+.++... .......+|..++.||||||++|. +.++|.+|++|.|||||+++++.+..+|..
T Consensus 536 ~~~~~~~~~~~L~tLll~~n~~~--l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~ 613 (889)
T KOG4658|consen 536 EHIAGSSENPKLRTLLLQRNSDW--LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSG 613 (889)
T ss_pred hhccCCCCCCccceEEEeecchh--hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchH
Confidence 6677777 999999999998631 133567899999999999999876 779999999999999999999999999999
Q ss_pred hhhcCCCccEeecCCc-cccccchhhhccccCceecCCCccCCCC--CCCCCCCCCCCCeeeccCCCc-chhhhcCCCCc
Q 003387 563 LLSNLLNLYTLDMPFS-YIDHTADEFWKMNKLRHLNFGSITLPAH--PGKFCGSLENLNFISALHPCC-CTEDILGRLPN 638 (824)
Q Consensus 563 i~~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~L~~~~~~~~--~~p~i~~L~~L~~l~~~~~~~-~~~~~l~~l~~ 638 (824)
+ ++|.+|.+||+..+ .+..+|..+..|++||+|.+........ .+..+.+|++|+.+....... .... +..+.+
T Consensus 614 l-~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~-l~~~~~ 691 (889)
T KOG4658|consen 614 L-GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLED-LLGMTR 691 (889)
T ss_pred H-HHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhh-hhhhHH
Confidence 9 99999999999998 6666677677799999998866543222 222455566666666552222 1222 444444
Q ss_pred cceEEEecc-cccchhhHHHHhccCCCCCeEEEeccC---------------C-CCCccEEEeCcc---------CcCCC
Q 003387 639 LRNLRIRGD-LSYNQSLLSKSLCRLSCLESLKLANES---------------K-MPRLSKIVLAEY---------LFPHS 692 (824)
Q Consensus 639 L~~L~l~~~-~~~~~~~l~~~l~~l~~L~~L~l~~~~---------------~-~~~L~~l~l~~~---------~~~~~ 692 (824)
|.++...-. ........+.++..+.+|+.|.+.... . ++++..+.+..+ ...++
T Consensus 692 L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~ 771 (889)
T KOG4658|consen 692 LRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPH 771 (889)
T ss_pred HHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCc
Confidence 443222211 011334455566777778888777521 0 112222222222 34566
Q ss_pred ceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCccceecc----CcccCccE
Q 003387 693 LTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGN----AAMPKLEC 768 (824)
Q Consensus 693 L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~----~~lp~L~~ 768 (824)
|+.|.+..|....++++....+..+..+.+..+.+.+.......++|+++..+.+.... +..|..+. +.+|.+..
T Consensus 772 L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~-l~~~~ve~~p~l~~~P~~~~ 850 (889)
T KOG4658|consen 772 LTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLK-LEELIVEECPKLGKLPLLST 850 (889)
T ss_pred ccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccc-hhheehhcCcccccCccccc
Confidence 77777776666556665555555555555554444443334444555555555544422 33333322 44444445
Q ss_pred EEEecC-CCCCCCc
Q 003387 769 LIINPC-AYLKKMP 781 (824)
Q Consensus 769 L~l~~c-~~l~~lp 781 (824)
+.+.+| +++..+|
T Consensus 851 ~~i~~~~~~~~~~~ 864 (889)
T KOG4658|consen 851 LTIVGCEEKLKEYP 864 (889)
T ss_pred cceeccccceeecC
Confidence 555544 3333334
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.5e-58 Score=570.28 Aligned_cols=608 Identities=17% Similarity=0.145 Sum_probs=366.4
Q ss_pred CCCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEEC-CCCCC----------
Q 003387 154 KSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITE-PYSNE---------- 222 (824)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~-~vs~~---------- 222 (824)
+.+++|||+++++++..+|..+.++++||+||||||+||||||+++|+ ++..+|+..+|+.. -++..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhccccccc
Confidence 456799999999999999977777899999999999999999999999 78899999888751 01111
Q ss_pred -CC-HHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHhcCCCeEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEec
Q 003387 223 -YD-ADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWSIDMWDVIQEILPDNQNGSRVLITLT 300 (824)
Q Consensus 223 -~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR 300 (824)
++ ...++++++.++....+ ..... ...+++.|++||+||||||||+..+|+.+.....+.++||+||||||
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~---~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTr 332 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKD---IKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITK 332 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCC---cccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeC
Confidence 11 23466677776654332 11111 24577889999999999999999999999988788889999999999
Q ss_pred hHHHHh-------------------------hcccccCCcCcCccccchhhHHHhcCCCchhHHHHHhHH------Hhhh
Q 003387 301 DIRIII-------------------------SFQFEDGENMRLDLVPTGGPLRATYKGRPFLILYHGSIS------LEEN 349 (824)
Q Consensus 301 ~~~v~~-------------------------~f~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l------~~~~ 349 (824)
+++++. ||+.. ..+.++.+++++|+++|+|+|||++++|+.| .|+.
T Consensus 333 d~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~---~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~ 409 (1153)
T PLN03210 333 DKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN---SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMD 409 (1153)
T ss_pred cHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC---CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHH
Confidence 999875 34332 3345678899999999999999999999999 3444
Q ss_pred hhhhccCC-C-cccccccc---cCCC-CchHHHhHhccCCCCceechhHHHHHHHHcCCCCCChHHHHHHHHHHHHhccc
Q 003387 350 IREAVETP-L-GLRYIKCL---MLPF-CLKPCFIYLSVFPAHQEISTRQLYQLWIAEGFIPDNSEATAESYLEQLIKEGF 423 (824)
Q Consensus 350 ~~~~~~~~-~-~~~~~l~~---~L~~-~lk~cfl~~s~fp~~~~i~~~~Li~~W~a~g~i~~~~e~~~~~~~~~Lv~rsl 423 (824)
....+... . .+..+|++ +|++ ..|.||++||+||.+..++ .+..|++.+.+. ++..++.|+++||
T Consensus 410 ~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~------~~~~l~~L~~ksL 480 (1153)
T PLN03210 410 MLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLD------VNIGLKNLVDKSL 480 (1153)
T ss_pred HHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCC------chhChHHHHhcCC
Confidence 43344322 2 78888888 9987 5999999999999987553 477788876652 3445999999999
Q ss_pred cceeecCCCCcEEEEEcCccHHHHHHhhc-ccE--------EEccCC-C-CCCCCCCCCCeeEEEEEecCCCc-cccc-c
Q 003387 424 VEAKKRKAGGTINTCSIPGRWRPVLHTVP-YMV--------EFICSP-F-MDPKGKSPKKAKRLNAVEREGDF-ACLD-D 490 (824)
Q Consensus 424 lq~~~~~~~g~~~~~~mHdlv~dla~~~~-~~~--------~~~~~~-~-~~~~~~~~~~~r~lsl~~~~~~~-~~~~-~ 490 (824)
++... ..+.|||++|+||+.++ ... .+.... . .........+++.+++....... .+.. .
T Consensus 481 i~~~~-------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~a 553 (1153)
T PLN03210 481 IHVRE-------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENA 553 (1153)
T ss_pred EEEcC-------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHH
Confidence 98753 24899999999999987 211 000000 0 00011233456666665222111 0111 1
Q ss_pred c--CCceeEeeccCCCCCC--CCcchhHhhhc-----------------------ccCcccEEEeeCccCccCCccCCCC
Q 003387 491 Y--DSQLHSLLCCSPETRH--LDPIDWEKFCG-----------------------MFKLLRVLDLGSLVLIQYPSGIENL 543 (824)
Q Consensus 491 ~--~~~Lr~L~l~~~~~~~--~~~~~~~~~~~-----------------------~~~~Lr~L~L~~~~i~~lp~~i~~l 543 (824)
+ +++|+.|.+....... .....++..|. .+.+|+.|+++++.+..+|..+..+
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l 633 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSL 633 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccC
Confidence 1 5566666554332100 00001111122 2344555555555555555555555
Q ss_pred CcceEEeecCCC-CCccChhhhhcCCCccEeecCCc-cccccchhhhccccCceecCCCccCCCCCCCCCCCCCCCCeee
Q 003387 544 FLLRYLKLNIPS-LNSLPSSLLSNLLNLYTLDMPFS-YIDHTADEFWKMNKLRHLNFGSITLPAHPGKFCGSLENLNFIS 621 (824)
Q Consensus 544 ~~Lr~L~L~~~~-i~~lp~~i~~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~L~~~~~~~~~~p~i~~L~~L~~l~ 621 (824)
++|++|+|+++. +..+|. + +.+++|++|+|++| .+..+|..++++++|++|++++|.... .+|...++++|+.|+
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip~-l-s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~-~Lp~~i~l~sL~~L~ 710 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIPD-L-SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE-ILPTGINLKSLYRLN 710 (1153)
T ss_pred CCCCEEECCCCCCcCcCCc-c-ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC-ccCCcCCCCCCCEEe
Confidence 555555555432 334442 3 45555555555555 445555555555555555555443221 333111445555555
Q ss_pred ccCCCcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccC---CCCCccEEEeCccCcCCCceEEEE
Q 003387 622 ALHPCCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANES---KMPRLSKIVLAEYLFPHSLTHLSF 698 (824)
Q Consensus 622 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~---~~~~L~~l~l~~~~~~~~L~~L~L 698 (824)
++.... +.......++|+.|+++++. ...+|..+ .+++|++|.+.... -...+..+.......+++|+.|+|
T Consensus 711 Lsgc~~-L~~~p~~~~nL~~L~L~~n~---i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~L 785 (1153)
T PLN03210 711 LSGCSR-LKSFPDISTNISWLDLDETA---IEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFL 785 (1153)
T ss_pred CCCCCC-ccccccccCCcCeeecCCCc---cccccccc-cccccccccccccchhhccccccccchhhhhccccchheeC
Confidence 442110 11101112345555554442 22233322 33444444443210 000000000000012345666666
Q ss_pred EcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCC--------------------Ccccee
Q 003387 699 SNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLW--------------------LEEWTM 758 (824)
Q Consensus 699 ~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~--------------------l~~l~~ 758 (824)
++|.....+|..++++++|+.|+|++|.... .++.. ..+++|+.|+|++|.. ++.+|.
T Consensus 786 s~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~-~LP~~-~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~ 863 (1153)
T PLN03210 786 SDIPSLVELPSSIQNLHKLEHLEIENCINLE-TLPTG-INLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPW 863 (1153)
T ss_pred CCCCCccccChhhhCCCCCCEEECCCCCCcC-eeCCC-CCccccCEEECCCCCccccccccccccCEeECCCCCCccChH
Confidence 6665445555566666666666666543221 12211 1344455555544433 445565
Q ss_pred ccCcccCccEEEEecCCCCCCCccccccCccCcEEEecCCc
Q 003387 759 GNAAMPKLECLIINPCAYLKKMPEQLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 759 ~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 799 (824)
.+..+++|+.|++++|+.+..+|..+..+++|+.+++++|+
T Consensus 864 si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 864 WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred HHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 66778999999999999999999988999999999999998
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.5e-38 Score=335.66 Aligned_cols=242 Identities=29% Similarity=0.430 Sum_probs=190.1
Q ss_pred chhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCC
Q 003387 161 LDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSS 240 (824)
Q Consensus 161 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~ 240 (824)
||.++++|.+.|....++.++|+|+||||+||||||+.++++.+++.+|+.++||. +++.++..+++.+|+.+++...
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~--~~~~~~~~~~~~~i~~~l~~~~ 78 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS--LSKNPSLEQLLEQILRQLGEPD 78 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE--EES-SCCHHHHHHHHHHHTCC-
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccc--cccccccccccccccccccccc
Confidence 78999999999999667899999999999999999999999766999999999999 9999999999999999999863
Q ss_pred CcccccccCHHHHHHHHHHhcCCCeEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEechHHHHh--------------
Q 003387 241 RLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWSIDMWDVIQEILPDNQNGSRVLITLTDIRIII-------------- 306 (824)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~-------------- 306 (824)
... ....+.++....+.+.|+++++||||||||+...|+.+...++....||+||||||+..++.
T Consensus 79 ~~~-~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L 157 (287)
T PF00931_consen 79 SSI-SDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPL 157 (287)
T ss_dssp STS-SCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS-
T ss_pred ccc-ccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 211 14567788999999999999999999999999999999988888888999999999998875
Q ss_pred -------hcccccCC---cCcCccccchhhHHHhcCCCchhHHHHHhHH-------Hhhhhhhhc----c---CCC-ccc
Q 003387 307 -------SFQFEDGE---NMRLDLVPTGGPLRATYKGRPFLILYHGSIS-------LEENIREAV----E---TPL-GLR 361 (824)
Q Consensus 307 -------~f~~~~~~---~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l-------~~~~~~~~~----~---~~~-~~~ 361 (824)
+|....+. ..++.+.+.+++|+++|+|+|||++++|++| .|+.....+ . +.. .+.
T Consensus 158 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~ 237 (287)
T PF00931_consen 158 SEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVF 237 (287)
T ss_dssp -HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 33333221 2245678899999999999999999999999 122222122 1 112 677
Q ss_pred ccccc---cCCCCchHHHhHhccCCCCceechhHHHHHHHHcCCCCC
Q 003387 362 YIKCL---MLPFCLKPCFIYLSVFPAHQEISTRQLYQLWIAEGFIPD 405 (824)
Q Consensus 362 ~~l~~---~L~~~lk~cfl~~s~fp~~~~i~~~~Li~~W~a~g~i~~ 405 (824)
.++.+ .||+++|.||+|||+||+++.|+++.|+++|+++|||.+
T Consensus 238 ~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 238 SALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 77766 999999999999999999999999999999999999853
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=4.9e-27 Score=247.98 Aligned_cols=315 Identities=20% Similarity=0.224 Sum_probs=268.6
Q ss_pred CCCeeEEEEEecCCCccccccc--CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCccCCCCCcce
Q 003387 470 PKKAKRLNAVEREGDFACLDDY--DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPSGIENLFLLR 547 (824)
Q Consensus 470 ~~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr 547 (824)
.+++.||++. .+....+...+ .|.||++.+..+.... ..++++ +-++..|.+||||.|.+...|..+..-+++-
T Consensus 54 lqkLEHLs~~-HN~L~~vhGELs~Lp~LRsv~~R~N~LKn--sGiP~d-iF~l~dLt~lDLShNqL~EvP~~LE~AKn~i 129 (1255)
T KOG0444|consen 54 LQKLEHLSMA-HNQLISVHGELSDLPRLRSVIVRDNNLKN--SGIPTD-IFRLKDLTILDLSHNQLREVPTNLEYAKNSI 129 (1255)
T ss_pred Hhhhhhhhhh-hhhhHhhhhhhccchhhHHHhhhcccccc--CCCCch-hcccccceeeecchhhhhhcchhhhhhcCcE
Confidence 4567888888 44444355555 9999999999887753 334544 4568999999999999999999999999999
Q ss_pred EEeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCceecCCCccCCCCCCCCCCCCCCCCeeeccCCC-
Q 003387 548 YLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKFCGSLENLNFISALHPC- 626 (824)
Q Consensus 548 ~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~- 626 (824)
+|+|++|+|..+|.++|-+|+.|-+||||+|.+..+|+.+..|.+|+.|+|++|.+....+..+..|++|+.|.+++..
T Consensus 130 VLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR 209 (1255)
T KOG0444|consen 130 VLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR 209 (1255)
T ss_pred EEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc
Confidence 9999999999999999899999999999999999999999999999999999998864444466778888888887432
Q ss_pred --cchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCccCcCCCceEEEEEcccCC
Q 003387 627 --CCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYLFPHSLTHLSFSNTDLM 704 (824)
Q Consensus 627 --~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~ 704 (824)
..++..+..+.||+.++++.+ +...+|..+.++.+|+.|+|++| .++.|.+.. ..-.+|++|++|.|+++
T Consensus 210 Tl~N~Ptsld~l~NL~dvDlS~N---~Lp~vPecly~l~~LrrLNLS~N----~iteL~~~~-~~W~~lEtLNlSrNQLt 281 (1255)
T KOG0444|consen 210 TLDNIPTSLDDLHNLRDVDLSEN---NLPIVPECLYKLRNLRRLNLSGN----KITELNMTE-GEWENLETLNLSRNQLT 281 (1255)
T ss_pred hhhcCCCchhhhhhhhhcccccc---CCCcchHHHhhhhhhheeccCcC----ceeeeeccH-HHHhhhhhhccccchhc
Confidence 233334888999999999988 67788999999999999999987 577776543 44578999999999975
Q ss_pred CCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCccceeccCcccCccEEEEecCCCCCCCcccc
Q 003387 705 DDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAYLKKMPEQL 784 (824)
Q Consensus 705 ~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~~l 784 (824)
..|..+++++.|+.|.+.+|+++-+.++..++.+.+|+++...++. ++-.|.+++.++.|++|.++.|. +-.+|.++
T Consensus 282 -~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaI 358 (1255)
T KOG0444|consen 282 -VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPEGLCRCVKLQKLKLDHNR-LITLPEAI 358 (1255)
T ss_pred -cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cccCchhhhhhHHHHHhcccccc-eeechhhh
Confidence 6788999999999999999998888899999999999999999865 88889999999999999999666 55799999
Q ss_pred ccCccCcEEEecCCc
Q 003387 785 WYIKSLNKFDCWWPQ 799 (824)
Q Consensus 785 ~~l~~L~~L~l~~c~ 799 (824)
.-++.|+.|++..+|
T Consensus 359 HlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 359 HLLPDLKVLDLRENP 373 (1255)
T ss_pred hhcCCcceeeccCCc
Confidence 999999999999998
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=9.9e-24 Score=261.50 Aligned_cols=275 Identities=23% Similarity=0.222 Sum_probs=145.4
Q ss_pred cCcccEEEeeCccCc-cCCccCCCCCcceEEeecCCCCC-ccChhhhhcCCCccEeecCCcccc-ccchhhhccccCcee
Q 003387 520 FKLLRVLDLGSLVLI-QYPSGIENLFLLRYLKLNIPSLN-SLPSSLLSNLLNLYTLDMPFSYID-HTADEFWKMNKLRHL 596 (824)
Q Consensus 520 ~~~Lr~L~L~~~~i~-~lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L 596 (824)
+++|++|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..+ +++++|++|++++|.+. .+|..++++++|++|
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 344444444444443 44444555555555555555543 444444 55555555555555333 345555555555555
Q ss_pred cCCCccCCCCCCC-CCCCCCCCCeeeccCCC--cchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEecc
Q 003387 597 NFGSITLPAHPGK-FCGSLENLNFISALHPC--CCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANE 673 (824)
Q Consensus 597 ~L~~~~~~~~~~p-~i~~L~~L~~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~ 673 (824)
++++|.+.. .+| .++++++|+.|+++.+. ..++..++++++|+.|+++++. ....+|..+.++++|++|++++|
T Consensus 218 ~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~--l~~~~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 218 YLGYNNLSG-EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK--LSGPIPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred ECcCCccCC-cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCe--eeccCchhHhhccCcCEEECcCC
Confidence 555555443 333 55555555555554221 1122225555555555555543 22334455555556666665543
Q ss_pred C----------CCCCccEEEeCcc----------CcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeee
Q 003387 674 S----------KMPRLSKIVLAEY----------LFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLT 733 (824)
Q Consensus 674 ~----------~~~~L~~l~l~~~----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~ 733 (824)
. ..++|+.|.+.++ ..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+ .++
T Consensus 295 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~-~~p 373 (968)
T PLN00113 295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG-EIP 373 (968)
T ss_pred eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEe-eCC
Confidence 2 2234445544433 234555555555555555555555555555555555554443 122
Q ss_pred ecCCCCCCccEEeeccCCCCccceeccCcccCccEEEEecCCCCCCCccccccCccCcEEEecCCc
Q 003387 734 CGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAYLKKMPEQLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 734 ~~~~~~~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 799 (824)
.....+++|+.|++++|.....+|..++.+++|+.|++++|.....+|..+..+++|+.|++++|.
T Consensus 374 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 374 EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439 (968)
T ss_pred hhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence 333445566666666655444555556667777888877777666677777777888888887765
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=5.7e-24 Score=263.59 Aligned_cols=300 Identities=22% Similarity=0.258 Sum_probs=155.7
Q ss_pred CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCc-cCCccCCCCCcceEEeecCCCCC-ccChhhhhcCCC
Q 003387 492 DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLI-QYPSGIENLFLLRYLKLNIPSLN-SLPSSLLSNLLN 569 (824)
Q Consensus 492 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~-~lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~~L~~ 569 (824)
.++|++|.+.++... ...+..+..+++|++|+|++|.+. .+|..++++++|++|+|++|.+. .+|..+ +++++
T Consensus 139 l~~L~~L~Ls~n~~~----~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~ 213 (968)
T PLN00113 139 IPNLETLDLSNNMLS----GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL-GQMKS 213 (968)
T ss_pred cCCCCEEECcCCccc----ccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHH-cCcCC
Confidence 455555555544432 122344555556666666665544 55555555666666666555544 344444 55555
Q ss_pred ccEeecCCcccc-ccchhhhccccCceecCCCccCCCCCCC-CCCCCCCCCeeeccCCC--cchhhhcCCCCccceEEEe
Q 003387 570 LYTLDMPFSYID-HTADEFWKMNKLRHLNFGSITLPAHPGK-FCGSLENLNFISALHPC--CCTEDILGRLPNLRNLRIR 645 (824)
Q Consensus 570 L~~L~L~~~~l~-~lp~~i~~L~~L~~L~L~~~~~~~~~~p-~i~~L~~L~~l~~~~~~--~~~~~~l~~l~~L~~L~l~ 645 (824)
|++|+|++|.+. .+|..++++++|++|++++|.+.+ .+| .++++++|+.|++..+. ...+..+..+++|+.|+++
T Consensus 214 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 292 (968)
T PLN00113 214 LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG-PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS 292 (968)
T ss_pred ccEEECcCCccCCcCChhHhcCCCCCEEECcCceecc-ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECc
Confidence 666665555443 445555555555555555555443 333 55555555555554211 1111124444455555554
Q ss_pred cccc----------------------cchhhHHHHhccCCCCCeEEEeccC----------CCCCccEEEeCcc------
Q 003387 646 GDLS----------------------YNQSLLSKSLCRLSCLESLKLANES----------KMPRLSKIVLAEY------ 687 (824)
Q Consensus 646 ~~~~----------------------~~~~~l~~~l~~l~~L~~L~l~~~~----------~~~~L~~l~l~~~------ 687 (824)
+|.- ......|..+..+++|+.|++++|. ..++|+.+++.++
T Consensus 293 ~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~ 372 (968)
T PLN00113 293 DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI 372 (968)
T ss_pred CCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeC
Confidence 4420 0222334444445555555554431 2234444444433
Q ss_pred ----CcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCccceeccCcc
Q 003387 688 ----LFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAM 763 (824)
Q Consensus 688 ----~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l 763 (824)
..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+ .++..+..+++|+.|++++|.....++.....+
T Consensus 373 p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 451 (968)
T PLN00113 373 PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG-ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDM 451 (968)
T ss_pred ChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee-ECChhHhcCCCCCEEECcCCcccCccChhhccC
Confidence 123445555555555555555555666666666666655544 233344556666666666665444444445566
Q ss_pred cCccEEEEecCCCCCCCccccccCccCcEEEecCCc
Q 003387 764 PKLECLIINPCAYLKKMPEQLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 764 p~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 799 (824)
++|+.|++++|.....+|..+ ..++|+.|++++|.
T Consensus 452 ~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~ 486 (968)
T PLN00113 452 PSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQ 486 (968)
T ss_pred CCCcEEECcCceeeeecCccc-ccccceEEECcCCc
Confidence 777777777777666666543 34677777777765
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=1.7e-22 Score=212.92 Aligned_cols=317 Identities=18% Similarity=0.184 Sum_probs=214.9
Q ss_pred CCCeeEEEEEecCCCccccccc--CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCc-cCCCCCcc
Q 003387 470 PKKAKRLNAVEREGDFACLDDY--DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPS-GIENLFLL 546 (824)
Q Consensus 470 ~~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~-~i~~l~~L 546 (824)
..+++.+.+. ++....+|... ..++..|.+..+.... +-...+.-++.||+||||.|.|+.+|. ++..-.++
T Consensus 101 l~nLq~v~l~-~N~Lt~IP~f~~~sghl~~L~L~~N~I~s----v~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni 175 (873)
T KOG4194|consen 101 LPNLQEVNLN-KNELTRIPRFGHESGHLEKLDLRHNLISS----VTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNI 175 (873)
T ss_pred CCcceeeeec-cchhhhcccccccccceeEEeeecccccc----ccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCc
Confidence 4566667777 55555577666 7779999988887643 445667778999999999999987774 46667899
Q ss_pred eEEeecCCCCCccChhhhhcCCCccEeecCCccccccchh-hhccccCceecCCCccCCCCCCCCCCCCCCCCeeeccCC
Q 003387 547 RYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADE-FWKMNKLRHLNFGSITLPAHPGKFCGSLENLNFISALHP 625 (824)
Q Consensus 547 r~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~~~~~~p~i~~L~~L~~l~~~~~ 625 (824)
++|+|++|.|+.+-..-|.+|.+|-+|.|+.|.++.+|.. |.+|++|+.|+|..|.+.-...-.+..|.+|+.+.+..+
T Consensus 176 ~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN 255 (873)
T KOG4194|consen 176 KKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRN 255 (873)
T ss_pred eEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhc
Confidence 9999999999988776678999999999999999999865 666999999999999886322225666777766666521
Q ss_pred -Ccc-hhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCccCcCCCceEEEEEcccC
Q 003387 626 -CCC-TEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYLFPHSLTHLSFSNTDL 703 (824)
Q Consensus 626 -~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l 703 (824)
... -...+-.|.+++.|++..+. ....-..++.+++.|+.|+++.| .++..++.+..++++|+.|+|++|.+
T Consensus 256 ~I~kL~DG~Fy~l~kme~l~L~~N~--l~~vn~g~lfgLt~L~~L~lS~N----aI~rih~d~WsftqkL~~LdLs~N~i 329 (873)
T KOG4194|consen 256 DISKLDDGAFYGLEKMEHLNLETNR--LQAVNEGWLFGLTSLEQLDLSYN----AIQRIHIDSWSFTQKLKELDLSSNRI 329 (873)
T ss_pred CcccccCcceeeecccceeecccch--hhhhhcccccccchhhhhccchh----hhheeecchhhhcccceeEecccccc
Confidence 111 12236668889999998875 33333457888999999999887 47888888888888888888888888
Q ss_pred CCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCccce---eccCcccCccEEEEecCCCCCCC
Q 003387 704 MDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWT---MGNAAMPKLECLIINPCAYLKKM 780 (824)
Q Consensus 704 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~---~~~~~lp~L~~L~l~~c~~l~~l 780 (824)
+...+..|..|..|++|+|+.|.+.-- -...+.++.+|++|+|.++..--.+. ..+..+|+|++|.+.+|. ++++
T Consensus 330 ~~l~~~sf~~L~~Le~LnLs~Nsi~~l-~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I 407 (873)
T KOG4194|consen 330 TRLDEGSFRVLSQLEELNLSHNSIDHL-AEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSI 407 (873)
T ss_pred ccCChhHHHHHHHhhhhcccccchHHH-HhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eeec
Confidence 777777777777777777777664320 01112344555555555543111110 112235555555555543 3444
Q ss_pred cc-ccccCccCcEEEecCCc
Q 003387 781 PE-QLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 781 p~-~l~~l~~L~~L~l~~c~ 799 (824)
|. .+..+++|++|++.+++
T Consensus 408 ~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 408 PKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred chhhhccCcccceecCCCCc
Confidence 43 34444555555544443
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=8.1e-21 Score=200.41 Aligned_cols=323 Identities=18% Similarity=0.139 Sum_probs=250.7
Q ss_pred CCCCeeEEEEEecCCCccc-cccc--CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCC-ccCCCCC
Q 003387 469 SPKKAKRLNAVEREGDFAC-LDDY--DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYP-SGIENLF 544 (824)
Q Consensus 469 ~~~~~r~lsl~~~~~~~~~-~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp-~~i~~l~ 544 (824)
....+.+|.+. .+.+..+ .+.+ .+.||+|.++.+.... +....|..-.+++.|+|++|.|+.+- ..|..+.
T Consensus 123 ~sghl~~L~L~-~N~I~sv~se~L~~l~alrslDLSrN~is~----i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ln 197 (873)
T KOG4194|consen 123 ESGHLEKLDLR-HNLISSVTSEELSALPALRSLDLSRNLISE----IPKPSFPAKVNIKKLNLASNRITTLETGHFDSLN 197 (873)
T ss_pred cccceeEEeee-ccccccccHHHHHhHhhhhhhhhhhchhhc----ccCCCCCCCCCceEEeeccccccccccccccccc
Confidence 34568899998 5554433 3344 8999999999887743 45567777788999999999999664 4678899
Q ss_pred cceEEeecCCCCCccChhhhhcCCCccEeecCCcccccc-chhhhccccCceecCCCccCCCCCCC--CCCCCCCCCeee
Q 003387 545 LLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHT-ADEFWKMNKLRHLNFGSITLPAHPGK--FCGSLENLNFIS 621 (824)
Q Consensus 545 ~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~~~~~~p--~i~~L~~L~~l~ 621 (824)
+|-.|.|+.|.++.+|.-.|.+|++|+.|+|..|.+... --.|..|++|+.|.|..|.+. .+. .+-.|.++++++
T Consensus 198 sL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~--kL~DG~Fy~l~kme~l~ 275 (873)
T KOG4194|consen 198 SLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS--KLDDGAFYGLEKMEHLN 275 (873)
T ss_pred hheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc--cccCcceeeecccceee
Confidence 999999999999999999888899999999999987766 345889999999999999887 444 566777888888
Q ss_pred ccCC--CcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCccCcCCCceEEEEE
Q 003387 622 ALHP--CCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYLFPHSLTHLSFS 699 (824)
Q Consensus 622 ~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~ 699 (824)
+..+ ...-...+-.|+.|+.|+++.+. ....-++....+++|+.|+|+.| ++++|.-..+..++.|+.|.|+
T Consensus 276 L~~N~l~~vn~g~lfgLt~L~~L~lS~Na--I~rih~d~WsftqkL~~LdLs~N----~i~~l~~~sf~~L~~Le~LnLs 349 (873)
T KOG4194|consen 276 LETNRLQAVNEGWLFGLTSLEQLDLSYNA--IQRIHIDSWSFTQKLKELDLSSN----RITRLDEGSFRVLSQLEELNLS 349 (873)
T ss_pred cccchhhhhhcccccccchhhhhccchhh--hheeecchhhhcccceeEecccc----ccccCChhHHHHHHHhhhhccc
Confidence 8732 12223337789999999999985 33334566777899999999987 5888877777888999999999
Q ss_pred cccCCCCCcccccCCCCCCeEEeeccccCCC--eeeecCCCCCCccEEeeccCCCCcccee-ccCcccCccEEEEecCCC
Q 003387 700 NTDLMDDPMPTLEKLPLLQVLKLKQNSYSGR--KLTCGSYGFPNLKVLHLKSMLWLEEWTM-GNAAMPKLECLIINPCAY 776 (824)
Q Consensus 700 ~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~l~~l~~-~~~~lp~L~~L~l~~c~~ 776 (824)
.|.+....-..|..+.+|+.|+|+.|.+... .-...+.++++|+.|.+.++. ++.++. .+..+++|+.|++.+|+.
T Consensus 350 ~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 350 HNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred ccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eeecchhhhccCcccceecCCCCcc
Confidence 9987655555678899999999998876531 112234679999999999976 788864 466799999999999996
Q ss_pred CCCCccccccCccCcEEEe------cCCcHHHHHHH
Q 003387 777 LKKMPEQLWYIKSLNKFDC------WWPQPELRQKL 806 (824)
Q Consensus 777 l~~lp~~l~~l~~L~~L~l------~~c~~~l~~~~ 806 (824)
..--|..+..+ .|++|.+ -+|.-.|..++
T Consensus 429 aSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qW 463 (873)
T KOG4194|consen 429 ASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQW 463 (873)
T ss_pred eeecccccccc-hhhhhhhcccceEEeccHHHHHHH
Confidence 55457777777 7887754 46775555443
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.79 E-value=7.6e-22 Score=199.61 Aligned_cols=175 Identities=21% Similarity=0.197 Sum_probs=107.7
Q ss_pred ccccc--CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhh
Q 003387 487 CLDDY--DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLL 564 (824)
Q Consensus 487 ~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~ 564 (824)
+|+.+ ...++.+.+..+... ..++.+..+..|..|+..+|++.++|..++.+..|..|++.+|.++++|+..
T Consensus 106 lp~~i~s~~~l~~l~~s~n~~~-----el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~- 179 (565)
T KOG0472|consen 106 LPEQIGSLISLVKLDCSSNELK-----ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENH- 179 (565)
T ss_pred ccHHHhhhhhhhhhhcccccee-----ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHH-
Confidence 55554 555666655555443 2345556666777777777777777777777777777777777777777776
Q ss_pred hcCCCccEeecCCccccccchhhhccccCceecCCCccCCCCCCCCCCCCCCCCeeeccCCC--cchhhhcCCCCccceE
Q 003387 565 SNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKFCGSLENLNFISALHPC--CCTEDILGRLPNLRNL 642 (824)
Q Consensus 565 ~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~--~~~~~~l~~l~~L~~L 642 (824)
-+++.|+.||...|.++.+|++++.|.+|..|++..|.+. .+|.|+.+..|.+|.++.+. ..+.+.+.++++|..|
T Consensus 180 i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~--~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vL 257 (565)
T KOG0472|consen 180 IAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR--FLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVL 257 (565)
T ss_pred HHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc--cCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceee
Confidence 4577777777777777777777777777777777777765 55666666666666655321 2223333345555555
Q ss_pred EEecccccchhhHHHHhccCCCCCeEEEec
Q 003387 643 RIRGDLSYNQSLLSKSLCRLSCLESLKLAN 672 (824)
Q Consensus 643 ~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~ 672 (824)
++..+ ...+.|..+..+.+|+.|++++
T Consensus 258 DLRdN---klke~Pde~clLrsL~rLDlSN 284 (565)
T KOG0472|consen 258 DLRDN---KLKEVPDEICLLRSLERLDLSN 284 (565)
T ss_pred ecccc---ccccCchHHHHhhhhhhhcccC
Confidence 55444 3344444444444444444444
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.79 E-value=1e-21 Score=207.98 Aligned_cols=307 Identities=18% Similarity=0.157 Sum_probs=236.2
Q ss_pred CCCeeEEEEEecCCC-ccccccc--CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCccCCCCCcc
Q 003387 470 PKKAKRLNAVEREGD-FACLDDY--DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPSGIENLFLL 546 (824)
Q Consensus 470 ~~~~r~lsl~~~~~~-~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~L 546 (824)
.+-+|-+.+..++.. ..+|..+ +..++-|.+...... -.++-++.+.+|..|.++.|.+.++-..+..|+.|
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-----~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~L 80 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-----QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRL 80 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-----hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhh
Confidence 344666666633333 3467777 889999988776654 35677888999999999999988888888999999
Q ss_pred eEEeecCCCCC--ccChhhhhcCCCccEeecCCccccccchhhhccccCceecCCCccCCCCCCC--CCCCCCCCCeeec
Q 003387 547 RYLKLNIPSLN--SLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGK--FCGSLENLNFISA 622 (824)
Q Consensus 547 r~L~L~~~~i~--~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~~~p--~i~~L~~L~~l~~ 622 (824)
|.+.++.|+++ .+|..+ -+|..|.+||||+|.+.+.|.++..-+++-+|+|++|.+. .+| -+-+|+.|-.|++
T Consensus 81 Rsv~~R~N~LKnsGiP~di-F~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie--tIPn~lfinLtDLLfLDL 157 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIPTDI-FRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE--TIPNSLFINLTDLLFLDL 157 (1255)
T ss_pred HHHhhhccccccCCCCchh-cccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc--cCCchHHHhhHhHhhhcc
Confidence 99999999876 899999 8999999999999999999999999999999999999987 566 6778888888888
Q ss_pred cCC--CcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccC-----CCCCccEEEeCccCcCCCceE
Q 003387 623 LHP--CCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANES-----KMPRLSKIVLAEYLFPHSLTH 695 (824)
Q Consensus 623 ~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~-----~~~~L~~l~l~~~~~~~~L~~ 695 (824)
+.+ ...++. +..|.+|++|.++++. ....-...+..+++|+.|.+++.. -++++ ..+.||..
T Consensus 158 S~NrLe~LPPQ-~RRL~~LqtL~Ls~NP--L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl--------d~l~NL~d 226 (1255)
T KOG0444|consen 158 SNNRLEMLPPQ-IRRLSMLQTLKLSNNP--LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL--------DDLHNLRD 226 (1255)
T ss_pred ccchhhhcCHH-HHHHhhhhhhhcCCCh--hhHHHHhcCccchhhhhhhcccccchhhcCCCch--------hhhhhhhh
Confidence 842 334555 8888899999998874 221122334455667777777521 12222 44678999
Q ss_pred EEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCccceeccCcccCccEEEEecCC
Q 003387 696 LSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCA 775 (824)
Q Consensus 696 L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~ 775 (824)
+++|.|.+. ..|..+.++++|+.|+|++|.++. +....+.-.+|++|+++.+. +..+|.....++.|++|++.+|.
T Consensus 227 vDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite--L~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 227 VDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE--LNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNK 302 (1255)
T ss_pred ccccccCCC-cchHHHhhhhhhheeccCcCceee--eeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCc
Confidence 999988863 667888899999999999998865 33444566789999999875 88888888889999999988776
Q ss_pred C-CCCCccccccCccCcEEEecCCc
Q 003387 776 Y-LKKMPEQLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 776 ~-l~~lp~~l~~l~~L~~L~l~~c~ 799 (824)
. ...+|++++.+.+|+.+...++.
T Consensus 303 L~FeGiPSGIGKL~~Levf~aanN~ 327 (1255)
T KOG0444|consen 303 LTFEGIPSGIGKLIQLEVFHAANNK 327 (1255)
T ss_pred ccccCCccchhhhhhhHHHHhhccc
Confidence 4 35689899888888877665543
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.78 E-value=3.8e-18 Score=211.97 Aligned_cols=289 Identities=19% Similarity=0.151 Sum_probs=208.4
Q ss_pred CCCCeeEEEEEecCCCccccccc-CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCcc-CccCCccCCCCCcc
Q 003387 469 SPKKAKRLNAVEREGDFACLDDY-DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLV-LIQYPSGIENLFLL 546 (824)
Q Consensus 469 ~~~~~r~lsl~~~~~~~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~-i~~lp~~i~~l~~L 546 (824)
.+.++|.+.+. +.....+|..+ ..+|+.|.+.++... .++..+..+++|++|+|+++. +..+|. ++.+++|
T Consensus 587 lp~~Lr~L~~~-~~~l~~lP~~f~~~~L~~L~L~~s~l~-----~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~L 659 (1153)
T PLN03210 587 LPPKLRLLRWD-KYPLRCMPSNFRPENLVKLQMQGSKLE-----KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNL 659 (1153)
T ss_pred cCcccEEEEec-CCCCCCCCCcCCccCCcEEECcCcccc-----ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcc
Confidence 34567888777 55555567666 788888888876653 233456789999999999876 667774 8889999
Q ss_pred eEEeecCCC-CCccChhhhhcCCCccEeecCCc-cccccchhhhccccCceecCCCccCCCCCCCCCCCCCCCCeeeccC
Q 003387 547 RYLKLNIPS-LNSLPSSLLSNLLNLYTLDMPFS-YIDHTADEFWKMNKLRHLNFGSITLPAHPGKFCGSLENLNFISALH 624 (824)
Q Consensus 547 r~L~L~~~~-i~~lp~~i~~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~L~~~~~~~~~~p~i~~L~~L~~l~~~~ 624 (824)
++|+|++|. +..+|.++ +++++|+.|++++| .++.+|..+ ++++|++|++++|.... .+|.+ .++|+.|++..
T Consensus 660 e~L~L~~c~~L~~lp~si-~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~-~~p~~--~~nL~~L~L~~ 734 (1153)
T PLN03210 660 ETLKLSDCSSLVELPSSI-QYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLK-SFPDI--STNISWLDLDE 734 (1153)
T ss_pred cEEEecCCCCccccchhh-hccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcc-ccccc--cCCcCeeecCC
Confidence 999999865 77899998 99999999999998 888999866 78999999998885432 33321 23344444442
Q ss_pred CC-cchhh------------------------------hcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEecc
Q 003387 625 PC-CCTED------------------------------ILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANE 673 (824)
Q Consensus 625 ~~-~~~~~------------------------------~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~ 673 (824)
+. ..++. ....+++|+.|+++++. ....+|.+++++++|+.|++++
T Consensus 735 n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~--~l~~lP~si~~L~~L~~L~Ls~- 811 (1153)
T PLN03210 735 TAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP--SLVELPSSIQNLHKLEHLEIEN- 811 (1153)
T ss_pred CccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCC--CccccChhhhCCCCCCEEECCC-
Confidence 11 11111 01123456666666654 4455677777888888888874
Q ss_pred CCCCCccEEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCC
Q 003387 674 SKMPRLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWL 753 (824)
Q Consensus 674 ~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 753 (824)
+++++.+... ..+++|+.|++++|......|. ..++|+.|+|++|.+.. ++.....+++|+.|++.+|+.+
T Consensus 812 --C~~L~~LP~~--~~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~~--iP~si~~l~~L~~L~L~~C~~L 882 (1153)
T PLN03210 812 --CINLETLPTG--INLESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGIEE--VPWWIEKFSNLSFLDMNGCNNL 882 (1153)
T ss_pred --CCCcCeeCCC--CCccccCEEECCCCCccccccc---cccccCEeECCCCCCcc--ChHHHhcCCCCCEEECCCCCCc
Confidence 3345544221 2578899999999865444333 24689999999887764 5667788999999999999999
Q ss_pred ccceeccCcccCccEEEEecCCCCCCCc
Q 003387 754 EEWTMGNAAMPKLECLIINPCAYLKKMP 781 (824)
Q Consensus 754 ~~l~~~~~~lp~L~~L~l~~c~~l~~lp 781 (824)
..++.....+++|+.|++++|+.+..++
T Consensus 883 ~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 883 QRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CccCcccccccCCCeeecCCCccccccc
Confidence 9999888899999999999999887543
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.70 E-value=1.1e-18 Score=194.37 Aligned_cols=78 Identities=24% Similarity=0.268 Sum_probs=46.8
Q ss_pred CCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCccceeccCcccCccEE
Q 003387 690 PHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECL 769 (824)
Q Consensus 690 ~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L 769 (824)
++.|+.|.+.+|.++....+.+.++++|+.|+|++|.+.. ........++.|+.|+|++|+ ++.+|.....++.|+.|
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~-fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL 435 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS-FPASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTL 435 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc-CCHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHH
Confidence 3456667777777777777777777788888887775542 111223556677777777764 55555443333333333
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.67 E-value=2.5e-19 Score=181.53 Aligned_cols=260 Identities=20% Similarity=0.195 Sum_probs=174.5
Q ss_pred cccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCceecCCCc
Q 003387 522 LLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSI 601 (824)
Q Consensus 522 ~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~ 601 (824)
-|..|++++|.++.+-+.+.++..|.+|++.++++.++|+++ +.+.+++.|+.+++++.++|+.++.+.+|++|+.++|
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc
Confidence 455666666666666666666667777777777777777776 7777777777777777777777777777777766666
Q ss_pred cCCCCCCC-CCCCCCCCCeeeccC-CCcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCc
Q 003387 602 TLPAHPGK-FCGSLENLNFISALH-PCCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRL 679 (824)
Q Consensus 602 ~~~~~~~p-~i~~L~~L~~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L 679 (824)
.+. .+| +++.+..|+.++..+ .....++.+..+..|..|.+.++ ...++|+..-+++.|++|+...|. |
T Consensus 125 ~~~--el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n---~l~~l~~~~i~m~~L~~ld~~~N~----L 195 (565)
T KOG0472|consen 125 ELK--ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN---KLKALPENHIAMKRLKHLDCNSNL----L 195 (565)
T ss_pred cee--ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhcccc---chhhCCHHHHHHHHHHhcccchhh----h
Confidence 665 334 666666666666552 22333333666667777766666 455555555557777777766542 2
Q ss_pred cEEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeec-CCCCCCccEEeeccCCCCcccee
Q 003387 680 SKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCG-SYGFPNLKVLHLKSMLWLEEWTM 758 (824)
Q Consensus 680 ~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~-~~~~~~L~~L~L~~~~~l~~l~~ 758 (824)
+.+ ....+.+.+|..|+|..|.+. ..+.|++|..|++|++..|.+.. ++.. ...+++|.+|++.+++ +++.|.
T Consensus 196 ~tl-P~~lg~l~~L~~LyL~~Nki~--~lPef~gcs~L~Elh~g~N~i~~--lpae~~~~L~~l~vLDLRdNk-lke~Pd 269 (565)
T KOG0472|consen 196 ETL-PPELGGLESLELLYLRRNKIR--FLPEFPGCSLLKELHVGENQIEM--LPAEHLKHLNSLLVLDLRDNK-LKEVPD 269 (565)
T ss_pred hcC-ChhhcchhhhHHHHhhhcccc--cCCCCCccHHHHHHHhcccHHHh--hHHHHhcccccceeeeccccc-cccCch
Confidence 222 122345567777777777753 23478888888888888776543 2222 3467888888888876 788888
Q ss_pred ccCcccCccEEEEecCCCCCCCccccccCccCcEEEecCCc
Q 003387 759 GNAAMPKLECLIINPCAYLKKMPEQLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 759 ~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 799 (824)
++.-+.+|+.|++++|. +..+|..++++ .|+.|-+.|+|
T Consensus 270 e~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 270 EICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred HHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCc
Confidence 88888888888888776 56788888888 88888888888
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.61 E-value=1.9e-17 Score=184.62 Aligned_cols=106 Identities=25% Similarity=0.234 Sum_probs=85.6
Q ss_pred CcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCccceeccCcccCcc
Q 003387 688 LFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLE 767 (824)
Q Consensus 688 ~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~lp~L~ 767 (824)
..+.+|+.|+|++|.+...+-..+.+++.|++|+|++|++.. ++.....++.|++|...+|. +..+| ++..+|.|+
T Consensus 380 ~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~--Lp~tva~~~~L~tL~ahsN~-l~~fP-e~~~l~qL~ 455 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT--LPDTVANLGRLHTLRAHSNQ-LLSFP-ELAQLPQLK 455 (1081)
T ss_pred ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh--hhHHHHhhhhhHHHhhcCCc-eeech-hhhhcCcce
Confidence 577899999999999865555668899999999999999876 55667889999999988765 77778 788899999
Q ss_pred EEEEecCCCCCC--CccccccCccCcEEEecCCc
Q 003387 768 CLIINPCAYLKK--MPEQLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 768 ~L~l~~c~~l~~--lp~~l~~l~~L~~L~l~~c~ 799 (824)
.++++.|. ++. +|..... ++|++|+++|++
T Consensus 456 ~lDlS~N~-L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 456 VLDLSCNN-LSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred EEecccch-hhhhhhhhhCCC-cccceeeccCCc
Confidence 99999655 432 3443333 799999999998
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.53 E-value=2.9e-14 Score=164.72 Aligned_cols=234 Identities=20% Similarity=0.101 Sum_probs=149.6
Q ss_pred CcccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCceecCCC
Q 003387 521 KLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGS 600 (824)
Q Consensus 521 ~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~ 600 (824)
++|+.|++++|.++.+|.. +++|++|++++|.++.+|.. .++|+.|++++|.+..+|.. ..+|+.|++++
T Consensus 222 ~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~ 291 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNPLTHLPAL---PSGLCKLWIFG 291 (788)
T ss_pred cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc----ccccceeeccCCchhhhhhc---hhhcCEEECcC
Confidence 3678888888888877753 46788888888888887753 35778888888877777753 35677888888
Q ss_pred ccCCCCCCCCCCCCCCCCeeeccCCC-cchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCc
Q 003387 601 ITLPAHPGKFCGSLENLNFISALHPC-CCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRL 679 (824)
Q Consensus 601 ~~~~~~~~p~i~~L~~L~~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L 679 (824)
|.+. .+|. .+++|+.|+++.+. ..++. -..+|+.|++++|. ...+|.. ..+|+.|++++|. +
T Consensus 292 N~Lt--~LP~--~p~~L~~LdLS~N~L~~Lp~---lp~~L~~L~Ls~N~---L~~LP~l---p~~Lq~LdLS~N~----L 354 (788)
T PRK15387 292 NQLT--SLPV--LPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQ---LTSLPTL---PSGLQELSVSDNQ----L 354 (788)
T ss_pred Cccc--cccc--cccccceeECCCCccccCCC---CcccccccccccCc---ccccccc---ccccceEecCCCc----c
Confidence 8776 4442 13567777777431 11111 12356677777663 2233321 1467888887762 3
Q ss_pred cEEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCccceec
Q 003387 680 SKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMG 759 (824)
Q Consensus 680 ~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~ 759 (824)
+.+. ..+++|+.|++++|.+.. +|.. .++|+.|++++|.+.. ++. ..++|+.|++++|. +..+|..
T Consensus 355 s~LP----~lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~--LP~---l~s~L~~LdLS~N~-LssIP~l 420 (788)
T PRK15387 355 ASLP----TLPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS--LPV---LPSELKELMVSGNR-LTSLPML 420 (788)
T ss_pred CCCC----CCCcccceehhhcccccc-Cccc---ccccceEEecCCcccC--CCC---cccCCCEEEccCCc-CCCCCcc
Confidence 3321 123567777777777653 3322 3467788888777654 221 23578888888765 5666532
Q ss_pred cCcccCccEEEEecCCCCCCCccccccCccCcEEEecCCc
Q 003387 760 NAAMPKLECLIINPCAYLKKMPEQLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 760 ~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 799 (824)
+.+|+.|++++|. ++.+|..+.++++|+.|+++++|
T Consensus 421 ---~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 421 ---PSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred ---hhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCC
Confidence 3467778887766 45678777778888888888876
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.51 E-value=3.1e-14 Score=165.68 Aligned_cols=241 Identities=20% Similarity=0.191 Sum_probs=130.2
Q ss_pred ccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCceecCCCcc
Q 003387 523 LRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSIT 602 (824)
Q Consensus 523 Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~ 602 (824)
..+|+++++.++.+|..+. .+|+.|+|++|+++.+|..+ . .+|++|++++|.++.+|..+. .+|+.|++++|.
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l-~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENL-Q--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR 252 (754)
T ss_pred ceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhh-c--cCCCEEECCCCccccCChhhh--ccccEEECcCCc
Confidence 4455555555555555443 24555555555555555544 2 355555555555555554332 245555555555
Q ss_pred CCCCCCC-CCCCCCCCCeeeccCCC-cchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCcc
Q 003387 603 LPAHPGK-FCGSLENLNFISALHPC-CCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLS 680 (824)
Q Consensus 603 ~~~~~~p-~i~~L~~L~~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~ 680 (824)
+. .+| .+. ++|+.|+++.+. ..++..+ .++|+.|++++|. ...+|..+. ++|+.|++++| +++
T Consensus 253 L~--~LP~~l~--s~L~~L~Ls~N~L~~LP~~l--~~sL~~L~Ls~N~---Lt~LP~~lp--~sL~~L~Ls~N----~Lt 317 (754)
T PRK15370 253 IT--ELPERLP--SALQSLDLFHNKISCLPENL--PEELRYLSVYDNS---IRTLPAHLP--SGITHLNVQSN----SLT 317 (754)
T ss_pred cC--cCChhHh--CCCCEEECcCCccCcccccc--CCCCcEEECCCCc---cccCcccch--hhHHHHHhcCC----ccc
Confidence 44 333 222 234555554211 1111112 2367777776663 222332221 35666666655 233
Q ss_pred EEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCccceecc
Q 003387 681 KIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGN 760 (824)
Q Consensus 681 ~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~ 760 (824)
.+.. ..+++|+.|++++|.+.. +|..+ .++|+.|++++|.+.. ++.. -.++|++|+|++|. +..+|..+
T Consensus 318 ~LP~---~l~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~--LP~~--lp~~L~~LdLs~N~-Lt~LP~~l 386 (754)
T PRK15370 318 ALPE---TLPPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITV--LPET--LPPTITTLDVSRNA-LTNLPENL 386 (754)
T ss_pred cCCc---cccccceeccccCCcccc-CChhh--cCcccEEECCCCCCCc--CChh--hcCCcCEEECCCCc-CCCCCHhH
Confidence 2211 123678888888887654 44443 3688888888777653 2221 23678888888875 56666433
Q ss_pred CcccCccEEEEecCCCCCCCccccc----cCccCcEEEecCCc
Q 003387 761 AAMPKLECLIINPCAYLKKMPEQLW----YIKSLNKFDCWWPQ 799 (824)
Q Consensus 761 ~~lp~L~~L~l~~c~~l~~lp~~l~----~l~~L~~L~l~~c~ 799 (824)
.++|+.|++++|. +..+|..+. .++++..|++.++|
T Consensus 387 --~~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 387 --PAALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred --HHHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence 2468888888776 446665443 34777888888877
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.49 E-value=1e-13 Score=160.18 Aligned_cols=260 Identities=18% Similarity=0.084 Sum_probs=179.6
Q ss_pred EEEEEecCCCcccccccCCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCccCCCCCcceEEeecCC
Q 003387 475 RLNAVEREGDFACLDDYDSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIP 554 (824)
Q Consensus 475 ~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~ 554 (824)
.|.+. +.....+|..+.++++.|.+.++.... ++ ...++|++|+|++|.++.+|.. .++|++|++++|
T Consensus 205 ~LdLs-~~~LtsLP~~l~~~L~~L~L~~N~Lt~-----LP---~lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 205 VLNVG-ESGLTTLPDCLPAHITTLVIPDNNLTS-----LP---ALPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred EEEcC-CCCCCcCCcchhcCCCEEEccCCcCCC-----CC---CCCCCCcEEEecCCccCcccCc---ccccceeeccCC
Confidence 34444 333334666556678888888776542 11 2357899999999999988864 358899999999
Q ss_pred CCCccChhhhhcCCCccEeecCCccccccchhhhccccCceecCCCccCCCCCCCCCCCCCCCCeeeccCCCcchhhhcC
Q 003387 555 SLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKFCGSLENLNFISALHPCCCTEDILG 634 (824)
Q Consensus 555 ~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~ 634 (824)
.+..+|... .+|+.|++++|.++.+|. .+++|+.|++++|.+. .+|.+ ..+|..|.+..+. +.. +.
T Consensus 273 ~L~~Lp~lp----~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~--~Lp~l--p~~L~~L~Ls~N~--L~~-LP 338 (788)
T PRK15387 273 PLTHLPALP----SGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLA--SLPAL--PSELCKLWAYNNQ--LTS-LP 338 (788)
T ss_pred chhhhhhch----hhcCEEECcCCccccccc---cccccceeECCCCccc--cCCCC--cccccccccccCc--ccc-cc
Confidence 999888633 568889999999999986 3578999999999887 34421 1235555555321 111 22
Q ss_pred CC-CccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCccCcCCCceEEEEEcccCCCCCcccccC
Q 003387 635 RL-PNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEK 713 (824)
Q Consensus 635 ~l-~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~ 713 (824)
.+ .+|+.|+++++. ...+|.. .++|+.|++++| .+..+. ..+++|+.|++++|.+.. +|..
T Consensus 339 ~lp~~Lq~LdLS~N~---Ls~LP~l---p~~L~~L~Ls~N----~L~~LP----~l~~~L~~LdLs~N~Lt~-LP~l--- 400 (788)
T PRK15387 339 TLPSGLQELSVSDNQ---LASLPTL---PSELYKLWAYNN----RLTSLP----ALPSGLKELIVSGNRLTS-LPVL--- 400 (788)
T ss_pred ccccccceEecCCCc---cCCCCCC---Ccccceehhhcc----ccccCc----ccccccceEEecCCcccC-CCCc---
Confidence 22 479999999874 3334432 246777887765 233221 123579999999998764 3332
Q ss_pred CCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCccceeccCcccCccEEEEecCCCCCCCcccc
Q 003387 714 LPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAYLKKMPEQL 784 (824)
Q Consensus 714 l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~~l 784 (824)
.++|+.|++++|.+.. ++. .+.+|+.|++++|. ++.+|..+..+++|+.|++++|+.....|..+
T Consensus 401 ~s~L~~LdLS~N~Lss--IP~---l~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 401 PSELKELMVSGNRLTS--LPM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred ccCCCEEEccCCcCCC--CCc---chhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 3689999999998764 222 24578999999876 78899888899999999999999765555443
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.44 E-value=2.3e-15 Score=135.78 Aligned_cols=150 Identities=22% Similarity=0.248 Sum_probs=113.8
Q ss_pred ccCcccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCceecC
Q 003387 519 MFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNF 598 (824)
Q Consensus 519 ~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L 598 (824)
.+.+...|-||.|.++.+|+.|..|.+|+.|++++|+++++|.++ +.+++|+.|++.-|.+..+|.+|+.++.|++||+
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 456677778888888888888888888888888888888888888 8888888888887888888888888888888888
Q ss_pred CCccCCCCCCC-CCCCCCCCCeeeccCCC--cchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEecc
Q 003387 599 GSITLPAHPGK-FCGSLENLNFISALHPC--CCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANE 673 (824)
Q Consensus 599 ~~~~~~~~~~p-~i~~L~~L~~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~ 673 (824)
.+|.+....+| .+-.|+.|+-|+++.+. ..+++ .+++++|+.|.+..+ ..-++|..++.++.|++|.+.+|
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d-vg~lt~lqil~lrdn---dll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD-VGKLTNLQILSLRDN---DLLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChh-hhhhcceeEEeeccC---chhhCcHHHHHHHHHHHHhcccc
Confidence 88887766777 66666777777766332 23444 777777777777665 55667777777777777777765
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.43 E-value=1.5e-13 Score=159.85 Aligned_cols=117 Identities=19% Similarity=0.169 Sum_probs=76.3
Q ss_pred eeEEEEEecCCCcccccccCCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCccCCCCCcceEEeec
Q 003387 473 AKRLNAVEREGDFACLDDYDSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLN 552 (824)
Q Consensus 473 ~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~ 552 (824)
...+.+. +.....+|..+.++++.|.+.++.... ++...+ ++|++|++++|.++.+|..+. .+|+.|+|+
T Consensus 180 ~~~L~L~-~~~LtsLP~~Ip~~L~~L~Ls~N~Lts----LP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 180 KTELRLK-ILGLTTIPACIPEQITTLILDNNELKS----LPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred ceEEEeC-CCCcCcCCcccccCCcEEEecCCCCCc----CChhhc---cCCCEEECCCCccccCChhhh--ccccEEECc
Confidence 3445555 333333554445667777777765532 222222 467888888887777776554 367888888
Q ss_pred CCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCceecCCCccCC
Q 003387 553 IPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLP 604 (824)
Q Consensus 553 ~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~ 604 (824)
+|.+..+|..+ . .+|++|++++|.+..+|..+. ++|++|++++|.+.
T Consensus 250 ~N~L~~LP~~l-~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 250 INRITELPERL-P--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIR 296 (754)
T ss_pred CCccCcCChhH-h--CCCCEEECcCCccCccccccC--CCCcEEECCCCccc
Confidence 88887777766 3 467888888777777776553 47888888777765
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.36 E-value=7.7e-13 Score=156.41 Aligned_cols=281 Identities=24% Similarity=0.213 Sum_probs=169.7
Q ss_pred ccccc-CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCcc--CccCCcc-CCCCCcceEEeecCCC-CCccCh
Q 003387 487 CLDDY-DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLV--LIQYPSG-IENLFLLRYLKLNIPS-LNSLPS 561 (824)
Q Consensus 487 ~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~--i~~lp~~-i~~l~~Lr~L~L~~~~-i~~lp~ 561 (824)
.+... ....|...+.++.... . ..-..++.|++|-+.++. +..++.. |..+++||+|+|++|. +.++|.
T Consensus 516 ~~~~~~~~~~rr~s~~~~~~~~-----~-~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~ 589 (889)
T KOG4658|consen 516 IPQVKSWNSVRRMSLMNNKIEH-----I-AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS 589 (889)
T ss_pred cccccchhheeEEEEeccchhh-----c-cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh
Confidence 34444 6677888877766542 1 112334579999999986 5566654 6679999999999765 789999
Q ss_pred hhhhcCCCccEeecCCccccccchhhhccccCceecCCCccCCCCCCC-CCCCCCCCCeeeccC-----CCcchhhhcCC
Q 003387 562 SLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGK-FCGSLENLNFISALH-----PCCCTEDILGR 635 (824)
Q Consensus 562 ~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~~~p-~i~~L~~L~~l~~~~-----~~~~~~~~l~~ 635 (824)
+| ++|-+|++|+++++.+..+|.++++|.+|.+||+..+.... .+| ....|++|++|.+.. ....+.+ +.+
T Consensus 590 ~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~-~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~e-l~~ 666 (889)
T KOG4658|consen 590 SI-GELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLE-SIPGILLELQSLRVLRLPRSALSNDKLLLKE-LEN 666 (889)
T ss_pred HH-hhhhhhhcccccCCCccccchHHHHHHhhheeccccccccc-cccchhhhcccccEEEeeccccccchhhHHh-hhc
Confidence 99 99999999999999999999999999999999998776543 346 445599999998763 2334555 677
Q ss_pred CCccceEEEecccccchhhHHHHhccCCCCC----eEEEeccC---------CCCCccEEEeCccCc-------------
Q 003387 636 LPNLRNLRIRGDLSYNQSLLSKSLCRLSCLE----SLKLANES---------KMPRLSKIVLAEYLF------------- 689 (824)
Q Consensus 636 l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~----~L~l~~~~---------~~~~L~~l~l~~~~~------------- 689 (824)
+.+|+.|.+..... .+...+..+..|. .+.+.... ...+++.|.+..+..
T Consensus 667 Le~L~~ls~~~~s~----~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~ 742 (889)
T KOG4658|consen 667 LEHLENLSITISSV----LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIV 742 (889)
T ss_pred ccchhhheeecchh----HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccch
Confidence 77888777765531 1112222222222 12211100 233444444444311
Q ss_pred ---CCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeee---------cCCCCCCccEE-eeccCCCCccc
Q 003387 690 ---PHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTC---------GSYGFPNLKVL-HLKSMLWLEEW 756 (824)
Q Consensus 690 ---~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~---------~~~~~~~L~~L-~L~~~~~l~~l 756 (824)
++++..+.+.+|... ..+.+.--.|+|+.|.+..|....+.++. ..-.|+++..+ .+.+...+..+
T Consensus 743 ~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i 821 (889)
T KOG4658|consen 743 LLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQL 821 (889)
T ss_pred hhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCcee
Confidence 223333333333211 11222234567777777766543322211 01234455555 35555555555
Q ss_pred eeccCcccCccEEEEecCCCCCCCc
Q 003387 757 TMGNAAMPKLECLIINPCAYLKKMP 781 (824)
Q Consensus 757 ~~~~~~lp~L~~L~l~~c~~l~~lp 781 (824)
....-.+++|+.+.+..||+++.+|
T Consensus 822 ~~~~l~~~~l~~~~ve~~p~l~~~P 846 (889)
T KOG4658|consen 822 YWLPLSFLKLEELIVEECPKLGKLP 846 (889)
T ss_pred EecccCccchhheehhcCcccccCc
Confidence 4444456667777777777776665
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.35 E-value=2e-13 Score=147.31 Aligned_cols=265 Identities=20% Similarity=0.128 Sum_probs=148.7
Q ss_pred hhHhhhcccCcccEEEeeCccCc-----cCCccCCCCCcceEEeecCCCCCc-------cChhhhhcCCCccEeecCCcc
Q 003387 512 DWEKFCGMFKLLRVLDLGSLVLI-----QYPSGIENLFLLRYLKLNIPSLNS-------LPSSLLSNLLNLYTLDMPFSY 579 (824)
Q Consensus 512 ~~~~~~~~~~~Lr~L~L~~~~i~-----~lp~~i~~l~~Lr~L~L~~~~i~~-------lp~~i~~~L~~L~~L~L~~~~ 579 (824)
.....+..+..|++|+++++.++ .++..+...++|++|+++++.+.. ++..+ .++++|+.|++++|.
T Consensus 14 ~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~ 92 (319)
T cd00116 14 RATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL-TKGCGLQELDLSDNA 92 (319)
T ss_pred chHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHH-HhcCceeEEEccCCC
Confidence 34567777788999999998874 466667777888899888877653 22334 678888888888886
Q ss_pred cc-ccchhhhcccc---CceecCCCccCCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCC-CccceEEEeccccc--ch
Q 003387 580 ID-HTADEFWKMNK---LRHLNFGSITLPAHPGKFCGSLENLNFISALHPCCCTEDILGRL-PNLRNLRIRGDLSY--NQ 652 (824)
Q Consensus 580 l~-~lp~~i~~L~~---L~~L~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~--~~ 652 (824)
+. ..+..+..+.+ |++|++++|.+.... ...+...+..+ ++|+.|+++++.-. ..
T Consensus 93 ~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~------------------~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 93 LGPDGCGVLESLLRSSSLQELKLNNNGLGDRG------------------LRLLAKGLKDLPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred CChhHHHHHHHHhccCcccEEEeeCCccchHH------------------HHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence 65 34455555555 888888887664210 01111124555 77788888777521 12
Q ss_pred hhHHHHhccCCCCCeEEEeccCCCCCccEEEe----CccCcCCCceEEEEEcccCCCCC----cccccCCCCCCeEEeec
Q 003387 653 SLLSKSLCRLSCLESLKLANESKMPRLSKIVL----AEYLFPHSLTHLSFSNTDLMDDP----MPTLEKLPLLQVLKLKQ 724 (824)
Q Consensus 653 ~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l----~~~~~~~~L~~L~L~~~~l~~~~----~~~l~~l~~L~~L~L~~ 724 (824)
..++..+..+++|++|+++++. ++.-.+ ..+..+++|+.|++++|.+.+.. ...+..+++|++|++++
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n~----l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~ 230 (319)
T cd00116 155 EALAKALRANRDLKELNLANNG----IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGD 230 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCCC----CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCC
Confidence 3345556666677777776541 221000 01123356777777776654322 22344566777777776
Q ss_pred cccCCCeeeecCC----CCCCccEEeeccCCCC----ccceeccCcccCccEEEEecCCCCCC----CccccccC-ccCc
Q 003387 725 NSYSGRKLTCGSY----GFPNLKVLHLKSMLWL----EEWTMGNAAMPKLECLIINPCAYLKK----MPEQLWYI-KSLN 791 (824)
Q Consensus 725 ~~~~~~~~~~~~~----~~~~L~~L~L~~~~~l----~~l~~~~~~lp~L~~L~l~~c~~l~~----lp~~l~~l-~~L~ 791 (824)
|.+.+..+..... ..+.|++|++++|... ..+......+++|+.+++++|..-.. +...+... +.|+
T Consensus 231 n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~ 310 (319)
T cd00116 231 NNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELE 310 (319)
T ss_pred CcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchh
Confidence 6654321111111 2356666666666421 11122233446666666666664422 22222333 4566
Q ss_pred EEEecCCc
Q 003387 792 KFDCWWPQ 799 (824)
Q Consensus 792 ~L~l~~c~ 799 (824)
.+++.+.|
T Consensus 311 ~~~~~~~~ 318 (319)
T cd00116 311 SLWVKDDS 318 (319)
T ss_pred hcccCCCC
Confidence 66655543
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.35 E-value=1.6e-14 Score=130.37 Aligned_cols=159 Identities=26% Similarity=0.372 Sum_probs=134.5
Q ss_pred CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCcc
Q 003387 492 DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLY 571 (824)
Q Consensus 492 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 571 (824)
.+++..|.++.+... ..+.-+..+.+|++|++++|.++.+|.+|+.++.||.|++.-|.+..+|..+ +.++-|+
T Consensus 32 ~s~ITrLtLSHNKl~-----~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgf-gs~p~le 105 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-----VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGF-GSFPALE 105 (264)
T ss_pred hhhhhhhhcccCcee-----ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcccc-CCCchhh
Confidence 677777777776654 3445678899999999999999999999999999999999999999999998 9999999
Q ss_pred EeecCCcccc--ccchhhhccccCceecCCCccCCCCCCC-CCCCCCCCCeeeccCC--CcchhhhcCCCCccceEEEec
Q 003387 572 TLDMPFSYID--HTADEFWKMNKLRHLNFGSITLPAHPGK-FCGSLENLNFISALHP--CCCTEDILGRLPNLRNLRIRG 646 (824)
Q Consensus 572 ~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~~~~~~~p-~i~~L~~L~~l~~~~~--~~~~~~~l~~l~~L~~L~l~~ 646 (824)
+|||.+|++. .+|..|..|+.|+-|+++.|.+. .+| .+++|++|+.|.+..+ -..+.+ ++.++.|+.|.|.+
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe--~lp~dvg~lt~lqil~lrdndll~lpke-ig~lt~lrelhiqg 182 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE--ILPPDVGKLTNLQILSLRDNDLLSLPKE-IGDLTRLRELHIQG 182 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc--cCChhhhhhcceeEEeeccCchhhCcHH-HHHHHHHHHHhccc
Confidence 9999999665 68999999999999999999887 667 9999999999998843 345566 99999999999999
Q ss_pred ccccchhhHHHHhccC
Q 003387 647 DLSYNQSLLSKSLCRL 662 (824)
Q Consensus 647 ~~~~~~~~l~~~l~~l 662 (824)
+. ...+|..++++
T Consensus 183 nr---l~vlppel~~l 195 (264)
T KOG0617|consen 183 NR---LTVLPPELANL 195 (264)
T ss_pred ce---eeecChhhhhh
Confidence 84 44455555443
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.26 E-value=1.2e-12 Score=141.28 Aligned_cols=250 Identities=22% Similarity=0.218 Sum_probs=168.9
Q ss_pred EEEeeCccCc--cCCccCCCCCcceEEeecCCCCC-----ccChhhhhcCCCccEeecCCccccc-------cchhhhcc
Q 003387 525 VLDLGSLVLI--QYPSGIENLFLLRYLKLNIPSLN-----SLPSSLLSNLLNLYTLDMPFSYIDH-------TADEFWKM 590 (824)
Q Consensus 525 ~L~L~~~~i~--~lp~~i~~l~~Lr~L~L~~~~i~-----~lp~~i~~~L~~L~~L~L~~~~l~~-------lp~~i~~L 590 (824)
.|+|.++.++ ..+..+..+.+|++|+++++.++ .++..+ ...++|++|+++++.+.. ++..+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l-~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASAL-RPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHH-hhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 3566666654 45555666778999999999884 456665 788889999999886553 34557778
Q ss_pred ccCceecCCCccCCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEeccccc--chhhHHHHhccC-CCCCe
Q 003387 591 NKLRHLNFGSITLPAHPGKFCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDLSY--NQSLLSKSLCRL-SCLES 667 (824)
Q Consensus 591 ~~L~~L~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~l~~~l~~l-~~L~~ 667 (824)
++|++|++++|.+... . ...+...... ++|+.|+++++.-. ....+...+..+ ++|+.
T Consensus 81 ~~L~~L~l~~~~~~~~-~-----------------~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~ 141 (319)
T cd00116 81 CGLQELDLSDNALGPD-G-----------------CGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEK 141 (319)
T ss_pred CceeEEEccCCCCChh-H-----------------HHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceE
Confidence 8999999988876420 0 1111111223 56999999988521 123444566677 89999
Q ss_pred EEEeccCCCCCccEEE----eCccCcCCCceEEEEEcccCCCCC----cccccCCCCCCeEEeeccccCCCe---eeecC
Q 003387 668 LKLANESKMPRLSKIV----LAEYLFPHSLTHLSFSNTDLMDDP----MPTLEKLPLLQVLKLKQNSYSGRK---LTCGS 736 (824)
Q Consensus 668 L~l~~~~~~~~L~~l~----l~~~~~~~~L~~L~L~~~~l~~~~----~~~l~~l~~L~~L~L~~~~~~~~~---~~~~~ 736 (824)
|+++++. ++.-. ...+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+.. +....
T Consensus 142 L~L~~n~----l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~ 217 (319)
T cd00116 142 LVLGRNR----LEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL 217 (319)
T ss_pred EEcCCCc----CCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh
Confidence 9998762 22110 111245578999999999886533 233456789999999998876432 22345
Q ss_pred CCCCCccEEeeccCCCCccce-ecc-C----cccCccEEEEecCCCCC----CCccccccCccCcEEEecCCc
Q 003387 737 YGFPNLKVLHLKSMLWLEEWT-MGN-A----AMPKLECLIINPCAYLK----KMPEQLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 737 ~~~~~L~~L~L~~~~~l~~l~-~~~-~----~lp~L~~L~l~~c~~l~----~lp~~l~~l~~L~~L~l~~c~ 799 (824)
..+++|++|++++|. +.... ..+ . ..+.|+.|++.+|.... .++..+..+++|+.+++++++
T Consensus 218 ~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 218 ASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred cccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 678999999999986 44321 111 1 24899999999997542 334456677899999999988
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.24 E-value=4.8e-13 Score=136.34 Aligned_cols=273 Identities=17% Similarity=0.088 Sum_probs=178.3
Q ss_pred ccccccCCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCcc-CCccCCCCCcceEEeecC-CCCCccChhh
Q 003387 486 ACLDDYDSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQ-YPSGIENLFLLRYLKLNI-PSLNSLPSSL 563 (824)
Q Consensus 486 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~-lp~~i~~l~~Lr~L~L~~-~~i~~lp~~i 563 (824)
++|..+.+....+.+..+... .+++..|+.++.||.|||+.|.|+. -|..|..|..|-.|-+.+ |+|+.+|...
T Consensus 60 eVP~~LP~~tveirLdqN~I~----~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 60 EVPANLPPETVEIRLDQNQIS----SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred cCcccCCCcceEEEeccCCcc----cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 466666677777777777763 4788999999999999999999984 477888899998888777 8899999999
Q ss_pred hhcCCCccEeecCCccccccch-hhhccccCceecCCCccCCCCCCC--CCCCCCCCCeeeccCCCcchhhhcCCCCccc
Q 003387 564 LSNLLNLYTLDMPFSYIDHTAD-EFWKMNKLRHLNFGSITLPAHPGK--FCGSLENLNFISALHPCCCTEDILGRLPNLR 640 (824)
Q Consensus 564 ~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~~~p--~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~ 640 (824)
|++|..|+-|.+.-|.+..++. .+..|++|..|.+..|.+. .++ .+..+.+++.+.+..+.. .. ..+++.+.
T Consensus 136 F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q--~i~~~tf~~l~~i~tlhlA~np~--ic-dCnL~wla 210 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ--SICKGTFQGLAAIKTLHLAQNPF--IC-DCNLPWLA 210 (498)
T ss_pred hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh--hhccccccchhccchHhhhcCcc--cc-ccccchhh
Confidence 9999999999999998887764 4899999999988888775 444 566677777766552110 00 12222221
Q ss_pred eE------EEecccc--------cchhhHHHHhccCCCCCeE--EEec--cC--CCCCccEEEeCccCcCCCceEEEEEc
Q 003387 641 NL------RIRGDLS--------YNQSLLSKSLCRLSCLESL--KLAN--ES--KMPRLSKIVLAEYLFPHSLTHLSFSN 700 (824)
Q Consensus 641 ~L------~l~~~~~--------~~~~~l~~~l~~l~~L~~L--~l~~--~~--~~~~L~~l~l~~~~~~~~L~~L~L~~ 700 (824)
.- ..++..- .....+.+.=. ...++.+ .+.. +. .+| ...+..+++|++|+|++
T Consensus 211 ~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf-~c~~esl~s~~~~~d~~d~~cP------~~cf~~L~~L~~lnlsn 283 (498)
T KOG4237|consen 211 DDLAMNPIETSGARCVSPYRLYYKRINQEDARKF-LCSLESLPSRLSSEDFPDSICP------AKCFKKLPNLRKLNLSN 283 (498)
T ss_pred hHHhhchhhcccceecchHHHHHHHhcccchhhh-hhhHHhHHHhhccccCcCCcCh------HHHHhhcccceEeccCC
Confidence 10 0000000 00000000000 0001111 0000 00 000 00125678889999999
Q ss_pred ccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCccc-eeccCcccCccEEEEecCCC
Q 003387 701 TDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEW-TMGNAAMPKLECLIINPCAY 776 (824)
Q Consensus 701 ~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l-~~~~~~lp~L~~L~l~~c~~ 776 (824)
|+++..-..+|..+..+++|.|..|++.... ...+.++..|+.|+|.++. ++.+ |..+..+.+|..|.+-.||.
T Consensus 284 N~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~-~~~f~~ls~L~tL~L~~N~-it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 284 NKITRIEDGAFEGAAELQELYLTRNKLEFVS-SGMFQGLSGLKTLSLYDNQ-ITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred CccchhhhhhhcchhhhhhhhcCcchHHHHH-HHhhhccccceeeeecCCe-eEEEecccccccceeeeeehccCcc
Confidence 9887777788888888999999888764311 1234677888888888876 4433 44566677888888887775
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.14 E-value=2.6e-12 Score=131.03 Aligned_cols=270 Identities=16% Similarity=0.134 Sum_probs=162.4
Q ss_pred ccEEEeeCccCccCCc-cCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCC-ccccccchh-hhccccCceecCC
Q 003387 523 LRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPF-SYIDHTADE-FWKMNKLRHLNFG 599 (824)
Q Consensus 523 Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~-~~l~~lp~~-i~~L~~L~~L~L~ 599 (824)
-..+.|..|.|+.+|+ .|+.+++||.|+|+.|.|+.+.+..|..|.+|-+|-+.+ |+|+.+|.+ |+.|..|+.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 3567788888888875 467788888888888888887776668888877776666 688888866 7888888888887
Q ss_pred CccCCCCCCC-CCCCCCCCCeeeccCCC-cch-hhhcCCCCccceEEEeccccc----------chhhHHHHhccCCCCC
Q 003387 600 SITLPAHPGK-FCGSLENLNFISALHPC-CCT-EDILGRLPNLRNLRIRGDLSY----------NQSLLSKSLCRLSCLE 666 (824)
Q Consensus 600 ~~~~~~~~~p-~i~~L~~L~~l~~~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~----------~~~~l~~~l~~l~~L~ 666 (824)
-|++.. ... .+..|++|..|.+.++. ..+ ...+..+.+++.+.+..+... .....+..++......
T Consensus 149 an~i~C-ir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 149 ANHINC-IRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred hhhhcc-hhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 777652 122 55556666555554211 111 112444555555554433200 0000011111111111
Q ss_pred eEEEeccCCCCCccEEEeCcc-CcCCCceEEEEEcccCCCCC-cccccCCCCCCeEEeeccccCCCeeeecCCCCCCccE
Q 003387 667 SLKLANESKMPRLSKIVLAEY-LFPHSLTHLSFSNTDLMDDP-MPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKV 744 (824)
Q Consensus 667 ~L~l~~~~~~~~L~~l~l~~~-~~~~~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~ 744 (824)
...+... .+..++-..+ .....+.+=-.+.|...... ...|..||+|+.|+|++|+++.. -...+.+...++.
T Consensus 228 p~rl~~~----Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i-~~~aFe~~a~l~e 302 (498)
T KOG4237|consen 228 PYRLYYK----RINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRI-EDGAFEGAAELQE 302 (498)
T ss_pred hHHHHHH----HhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchh-hhhhhcchhhhhh
Confidence 1111100 0000000000 00111111112233322222 23478999999999999988763 2344667889999
Q ss_pred EeeccCCCCcccee-ccCcccCccEEEEecCCCCCCCccccccCccCcEEEecCCc
Q 003387 745 LHLKSMLWLEEWTM-GNAAMPKLECLIINPCAYLKKMPEQLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 745 L~L~~~~~l~~l~~-~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 799 (824)
|.|..++ ++.+.. .+..+..|+.|++.+|....-.|..+..+.+|.+|++-.+|
T Consensus 303 L~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 303 LYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hhcCcch-HHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 9999876 555532 35678899999999999877778889999999999998766
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1e-10 Score=121.21 Aligned_cols=235 Identities=21% Similarity=0.163 Sum_probs=152.0
Q ss_pred CCCCcceEEeecCCCCCccCh--hhhhcCCCccEeecCCccc---cccchhhhccccCceecCCCccCCCCCCCCCCCCC
Q 003387 541 ENLFLLRYLKLNIPSLNSLPS--SLLSNLLNLYTLDMPFSYI---DHTADEFWKMNKLRHLNFGSITLPAHPGKFCGSLE 615 (824)
Q Consensus 541 ~~l~~Lr~L~L~~~~i~~lp~--~i~~~L~~L~~L~L~~~~l---~~lp~~i~~L~~L~~L~L~~~~~~~~~~p~i~~L~ 615 (824)
.++..||...|.++.+...+. .. ..|++++.|||+.|-+ ..+-.-..+|++|+.|+++.|.+.. | .
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~-k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~---~-~---- 188 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYS-KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN---F-I---- 188 (505)
T ss_pred hhHHhhhheeecCccccccchhhhh-hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC---C-c----
Confidence 456677777777777665553 34 6788888888888733 3334446688888888888887742 1 0
Q ss_pred CCCeeeccCCCcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCccCcCCCceE
Q 003387 616 NLNFISALHPCCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYLFPHSLTH 695 (824)
Q Consensus 616 ~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~ 695 (824)
+... -..+++|+.|.++.|.- +...+-..+..+++|+.|++..|. .+ ...-....-+..|+.
T Consensus 189 ----------~s~~---~~~l~~lK~L~l~~CGl-s~k~V~~~~~~fPsl~~L~L~~N~---~~-~~~~~~~~i~~~L~~ 250 (505)
T KOG3207|consen 189 ----------SSNT---TLLLSHLKQLVLNSCGL-SWKDVQWILLTFPSLEVLYLEANE---II-LIKATSTKILQTLQE 250 (505)
T ss_pred ----------cccc---hhhhhhhheEEeccCCC-CHHHHHHHHHhCCcHHHhhhhccc---cc-ceecchhhhhhHHhh
Confidence 0000 12467788888888852 355555666778888888888762 00 000111144677899
Q ss_pred EEEEcccCCC-CCcccccCCCCCCeEEeeccccCCCeeeec-----CCCCCCccEEeeccCCCCcccee--ccCcccCcc
Q 003387 696 LSFSNTDLMD-DPMPTLEKLPLLQVLKLKQNSYSGRKLTCG-----SYGFPNLKVLHLKSMLWLEEWTM--GNAAMPKLE 767 (824)
Q Consensus 696 L~L~~~~l~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~-----~~~~~~L~~L~L~~~~~l~~l~~--~~~~lp~L~ 767 (824)
|+|++|.+.. ...+..+.||.|..|+++.|.+..-..+.. ...||+|++|++..|+ +.+|+. .+..+++|+
T Consensus 251 LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk 329 (505)
T KOG3207|consen 251 LDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLK 329 (505)
T ss_pred ccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc-cccccccchhhccchhh
Confidence 9999987644 334677899999999999887765433332 4579999999999987 555653 345678999
Q ss_pred EEEEecCCCCCCC----ccccccCccCcEEEecCCcHHHH
Q 003387 768 CLIINPCAYLKKM----PEQLWYIKSLNKFDCWWPQPELR 803 (824)
Q Consensus 768 ~L~l~~c~~l~~l----p~~l~~l~~L~~L~l~~c~~~l~ 803 (824)
.|.+..++..+.- -..+..+++|..|+=.+|.+..+
T Consensus 330 ~l~~~~n~ln~e~~~a~~~VIAr~~~l~~LN~~di~p~eR 369 (505)
T KOG3207|consen 330 HLRITLNYLNKETDTAKLLVIARISQLVKLNDVDISPNER 369 (505)
T ss_pred hhhcccccccccccceeEEeeeehhhhhhhcccccChHHh
Confidence 9998877754321 11344556666666555654443
No 27
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.94 E-value=6.8e-08 Score=107.33 Aligned_cols=117 Identities=15% Similarity=0.161 Sum_probs=85.5
Q ss_pred CCCCceechhhHHHHHHHHHcC--CCCeEEEEEEcCCCChHHHHHHHHhCCccccCCC--ceeEEEECCCCCCCCHHHHH
Q 003387 154 KSRDTVGLDDRMEELLDLLIEG--PPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYF--DCHAWITEPYSNEYDADQIL 229 (824)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F--~~~~wv~~~vs~~~~~~~~~ 229 (824)
.++.++||++++++|...+... ......+.|+|++|+||||+++.++++ ..... -.++++. .....+...++
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~--l~~~~~~~~~v~in--~~~~~~~~~~~ 103 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEE--LEEIAVKVVYVYIN--CQIDRTRYAIF 103 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEE--CCcCCCHHHHH
Confidence 4568999999999999998553 223455789999999999999999984 33322 3455665 66667788999
Q ss_pred HHHHHHhCCCCCcccccccCHHHHHHHHHHhcC--CCeEEEEEecCCCh
Q 003387 230 DIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLM--TKRYLIVIDDVWSI 276 (824)
Q Consensus 230 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~ 276 (824)
.+|+.++..... + ....+.++....+.+.++ ++..+||+|+++..
T Consensus 104 ~~i~~~l~~~~~-~-~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l 150 (394)
T PRK00411 104 SEIARQLFGHPP-P-SSGLSFDELFDKIAEYLDERDRVLIVALDDINYL 150 (394)
T ss_pred HHHHHHhcCCCC-C-CCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHh
Confidence 999999976221 1 122345667777777775 45789999999864
No 28
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.93 E-value=6.3e-11 Score=122.17 Aligned_cols=121 Identities=21% Similarity=0.302 Sum_probs=84.4
Q ss_pred cCCCceEEEEEccc-CCCCCccccc-CCCCCCeEEeeccccCCCe-eeecCCCCCCccEEeeccCCCCccc-----eecc
Q 003387 689 FPHSLTHLSFSNTD-LMDDPMPTLE-KLPLLQVLKLKQNSYSGRK-LTCGSYGFPNLKVLHLKSMLWLEEW-----TMGN 760 (824)
Q Consensus 689 ~~~~L~~L~L~~~~-l~~~~~~~l~-~l~~L~~L~L~~~~~~~~~-~~~~~~~~~~L~~L~L~~~~~l~~l-----~~~~ 760 (824)
.+++|+.|.++.|+ ++......++ +++.|+.+++..+....+. +.....++|.|+.|.+++|..++.- ...-
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 44666666666664 3333344443 6788888888876544322 4444567899999999988766544 3334
Q ss_pred CcccCccEEEEecCCCCCC-CccccccCccCcEEEecCCcHHHHHHHhhc
Q 003387 761 AAMPKLECLIINPCAYLKK-MPEQLWYIKSLNKFDCWWPQPELRQKLREF 809 (824)
Q Consensus 761 ~~lp~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~c~~~l~~~~~~~ 809 (824)
..+..|+.+.+++||.+.. .-..+..+++|+.+++.+|..-.++.+++.
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~ 447 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRF 447 (483)
T ss_pred ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHH
Confidence 5678899999999998753 334577889999999999997777777763
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.91 E-value=1.8e-09 Score=102.89 Aligned_cols=130 Identities=22% Similarity=0.252 Sum_probs=47.5
Q ss_pred cccCcccEEEeeCccCccCCccCC-CCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchhh-hccccCce
Q 003387 518 GMFKLLRVLDLGSLVLIQYPSGIE-NLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEF-WKMNKLRH 595 (824)
Q Consensus 518 ~~~~~Lr~L~L~~~~i~~lp~~i~-~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i-~~L~~L~~ 595 (824)
.+...+|.|+|+|+.|+.+. .++ .+.+|+.|+|++|.|+.++. + ..|++|++|++++|.++.+++.+ ..+++|++
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~-l-~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEG-L-PGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccC-c-cChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 34456788999999888664 465 57889999999999888864 4 78899999999999888887665 36889999
Q ss_pred ecCCCccCCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEecccccc-hhhHHHHhccCCCCCeEEEe
Q 003387 596 LNFGSITLPAHPGKFCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDLSYN-QSLLSKSLCRLSCLESLKLA 671 (824)
Q Consensus 596 L~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~l~~~l~~l~~L~~L~l~ 671 (824)
|++++|.+.. ...+.. +..+++|+.|++.++.-.. ...-...+..+++|+.|+-.
T Consensus 93 L~L~~N~I~~--------------------l~~l~~-L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 93 LYLSNNKISD--------------------LNELEP-LSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EE-TTS---S--------------------CCCCGG-GGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred EECcCCcCCC--------------------hHHhHH-HHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 9998887752 111222 6677788888887765221 12223455566777766543
No 30
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.8e-10 Score=113.59 Aligned_cols=182 Identities=20% Similarity=0.221 Sum_probs=107.7
Q ss_pred CccEeecCCcccc--ccchhhhccccCceecCCCccCCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEec
Q 003387 569 NLYTLDMPFSYID--HTADEFWKMNKLRHLNFGSITLPAHPGKFCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRG 646 (824)
Q Consensus 569 ~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 646 (824)
.||+|||+...++ .+..-+..+.+|+.|.+.++.+.. ..... +.+-.+|+.|+++.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD---------------------~I~~~-iAkN~~L~~lnlsm 243 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD---------------------PIVNT-IAKNSNLVRLNLSM 243 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc---------------------HHHHH-Hhccccceeecccc
Confidence 3777777776544 444446677777777666666542 22222 56667788888887
Q ss_pred ccccchhhHHHHhccCCCCCeEEEeccCCC-CCccEEEeCccCcCCCceEEEEEccc--CCCCCccc-ccCCCCCCeEEe
Q 003387 647 DLSYNQSLLSKSLCRLSCLESLKLANESKM-PRLSKIVLAEYLFPHSLTHLSFSNTD--LMDDPMPT-LEKLPLLQVLKL 722 (824)
Q Consensus 647 ~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~-~~L~~l~l~~~~~~~~L~~L~L~~~~--l~~~~~~~-l~~l~~L~~L~L 722 (824)
+......+..-.+.+|+.|.+|+|+|++.. +..+.+ +. .--++|+.|+|++|. +....... ...+|+|.+|+|
T Consensus 244 ~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~-V~--hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDL 320 (419)
T KOG2120|consen 244 CSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVA-VA--HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDL 320 (419)
T ss_pred ccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHH-Hh--hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecc
Confidence 776666666666777788888888875411 011100 00 112456666666663 11122222 236778888888
Q ss_pred eccccCCCeeeecCCCCCCccEEeeccCCCCcc-ceeccCcccCccEEEEecCC
Q 003387 723 KQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEE-WTMGNAAMPKLECLIINPCA 775 (824)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~-l~~~~~~lp~L~~L~l~~c~ 775 (824)
++|.-........+..|+.|++|.++.|..+.. --..+..+|+|..|++.+|-
T Consensus 321 SD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 321 SDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 766433323334456778888888888764431 22346677888888888775
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.82 E-value=1.5e-10 Score=123.58 Aligned_cols=153 Identities=24% Similarity=0.257 Sum_probs=122.7
Q ss_pred hHhhhcccCcccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhcccc
Q 003387 513 WEKFCGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNK 592 (824)
Q Consensus 513 ~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~ 592 (824)
++.-+..|..|..|.|+.|.+..+|..++++..|.||+|+.|++..+|..+ +.|+ |+.|-+++|+++.+|+.++.++.
T Consensus 90 lp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~l-C~lp-Lkvli~sNNkl~~lp~~ig~~~t 167 (722)
T KOG0532|consen 90 LPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGL-CDLP-LKVLIVSNNKLTSLPEEIGLLPT 167 (722)
T ss_pred CchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhh-hcCc-ceeEEEecCccccCCcccccchh
Confidence 345556667778888888888888888888888888888888888888887 6665 88888888888888888888888
Q ss_pred CceecCCCccCCCCCCC-CCCCCCCCCeeeccC--CCcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEE
Q 003387 593 LRHLNFGSITLPAHPGK-FCGSLENLNFISALH--PCCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLK 669 (824)
Q Consensus 593 L~~L~L~~~~~~~~~~p-~i~~L~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~ 669 (824)
|.+||.+.|.+. .+| .++.|.+|+.+.+.. ....+++ +..|+ |.+|+++++ ....+|..+.++++|++|.
T Consensus 168 l~~ld~s~nei~--slpsql~~l~slr~l~vrRn~l~~lp~E-l~~Lp-Li~lDfScN---kis~iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 168 LAHLDVSKNEIQ--SLPSQLGYLTSLRDLNVRRNHLEDLPEE-LCSLP-LIRLDFSCN---KISYLPVDFRKMRHLQVLQ 240 (722)
T ss_pred HHHhhhhhhhhh--hchHHhhhHHHHHHHHHhhhhhhhCCHH-HhCCc-eeeeecccC---ceeecchhhhhhhhheeee
Confidence 888888888776 556 888888888877762 3445566 77665 889999988 6788899999999999999
Q ss_pred EeccC
Q 003387 670 LANES 674 (824)
Q Consensus 670 l~~~~ 674 (824)
|.+|.
T Consensus 241 LenNP 245 (722)
T KOG0532|consen 241 LENNP 245 (722)
T ss_pred eccCC
Confidence 99874
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.81 E-value=4.2e-10 Score=113.83 Aligned_cols=254 Identities=18% Similarity=0.145 Sum_probs=159.4
Q ss_pred hhHhhhcccCcccEEEeeCccCc-----cCCccCCCCCcceEEeecCCC----CCccChhh------hhcCCCccEeecC
Q 003387 512 DWEKFCGMFKLLRVLDLGSLVLI-----QYPSGIENLFLLRYLKLNIPS----LNSLPSSL------LSNLLNLYTLDMP 576 (824)
Q Consensus 512 ~~~~~~~~~~~Lr~L~L~~~~i~-----~lp~~i~~l~~Lr~L~L~~~~----i~~lp~~i------~~~L~~L~~L~L~ 576 (824)
........+..+..|+|+||.+. .+-+.+.+.++|+.-+++.-- ..++|+.+ +-.+++|++||||
T Consensus 21 ~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 21 DVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred hHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence 34456677888899999998875 445566677788888888632 22455433 2467799999999
Q ss_pred Ccccc--ccc---hhhhccccCceecCCCccCCCCCCCCCCCCCC-CCeeeccCCCcchhhhcCCCCccceEEEecccc-
Q 003387 577 FSYID--HTA---DEFWKMNKLRHLNFGSITLPAHPGKFCGSLEN-LNFISALHPCCCTEDILGRLPNLRNLRIRGDLS- 649 (824)
Q Consensus 577 ~~~l~--~lp---~~i~~L~~L~~L~L~~~~~~~~~~p~i~~L~~-L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~- 649 (824)
.|-+. .++ +-+.++..|++|+|.+|-+... +=+.+.. |.++... ...+.-++|+.+....+.-
T Consensus 101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~---ag~~l~~al~~l~~~-------kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPE---AGGRLGRALFELAVN-------KKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred ccccCccchHHHHHHHHhccCHHHHhhhcCCCChh---HHHHHHHHHHHHHHH-------hccCCCcceEEEEeeccccc
Confidence 98432 332 3367889999999988876421 0001100 2222111 1145556788888777762
Q ss_pred -cchhhHHHHhccCCCCCeEEEeccC-CCCCccEEEeCccCcCCCceEEEEEcccCCCCC----cccccCCCCCCeEEee
Q 003387 650 -YNQSLLSKSLCRLSCLESLKLANES-KMPRLSKIVLAEYLFPHSLTHLSFSNTDLMDDP----MPTLEKLPLLQVLKLK 723 (824)
Q Consensus 650 -~~~~~l~~~l~~l~~L~~L~l~~~~-~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~----~~~l~~l~~L~~L~L~ 723 (824)
.....+...+...+.|+.+.+..|. .++.. .+-..++..+++|+.|+|..|.++... ...+..+|+|++|+++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~-~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGV-TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchh-HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 2234455666777888888888764 12222 122223366788888888888775433 2345678889999999
Q ss_pred ccccCCCeee----ecCCCCCCccEEeeccCCCCcc----ceeccCcccCccEEEEecCCC
Q 003387 724 QNSYSGRKLT----CGSYGFPNLKVLHLKSMLWLEE----WTMGNAAMPKLECLIINPCAY 776 (824)
Q Consensus 724 ~~~~~~~~~~----~~~~~~~~L~~L~L~~~~~l~~----l~~~~~~lp~L~~L~l~~c~~ 776 (824)
+|.+....-. ....++|+|++|.+.+|..-.. +.......|.|++|+|++|..
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 8877653211 1124589999999988763221 122344589999999999985
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=7.8e-10 Score=114.86 Aligned_cols=42 Identities=24% Similarity=0.227 Sum_probs=17.8
Q ss_pred hhcccCcccEEEeeCccCc---cCCccCCCCCcceEEeecCCCCC
Q 003387 516 FCGMFKLLRVLDLGSLVLI---QYPSGIENLFLLRYLKLNIPSLN 557 (824)
Q Consensus 516 ~~~~~~~Lr~L~L~~~~i~---~lp~~i~~l~~Lr~L~L~~~~i~ 557 (824)
....|+++|.|||+.|-+. .+-+-+..|++|+.|+|+.|.+.
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~ 185 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS 185 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc
Confidence 3344455555555544433 11122233444444454444433
No 34
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.79 E-value=1.6e-07 Score=116.40 Aligned_cols=268 Identities=15% Similarity=0.160 Sum_probs=156.3
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCC-CCCHHHHHHHHHH
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSN-EYDADQILDIVIK 234 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~-~~~~~~~~~~i~~ 234 (824)
..++-|+ +|.+.|... ...+++.|.|++|.||||++...... ++.++|++ +.. +-+...+...++.
T Consensus 14 ~~~~~R~----rl~~~l~~~-~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~--l~~~d~~~~~f~~~l~~ 80 (903)
T PRK04841 14 HNTVVRE----RLLAKLSGA-NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYS--LDESDNQPERFASYLIA 80 (903)
T ss_pred cccCcch----HHHHHHhcc-cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEe--cCcccCCHHHHHHHHHH
Confidence 3444454 455555443 35789999999999999999998752 23689999 864 3466667777777
Q ss_pred HhCCCCCc--cc-------ccccCHHHHHHHHHHhcC--CCeEEEEEecCCChh--h-HHHHHhhCCCCCCCcEEEEEec
Q 003387 235 FLMPSSRL--SE-------IMDKNYEMKKIILHEYLM--TKRYLIVIDDVWSID--M-WDVIQEILPDNQNGSRVLITLT 300 (824)
Q Consensus 235 ~l~~~~~~--~~-------~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~--~-~~~l~~~~~~~~~gs~ilvTtR 300 (824)
.+...... +. ....+.......+...+. +.+++|||||+...+ . .+.+...++....+-++|||||
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR 160 (903)
T PRK04841 81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSR 160 (903)
T ss_pred HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 77421110 00 011223333444444443 689999999997542 2 2233333334445678889999
Q ss_pred hHH---HHh---------------hcccccC-----CcCc-CccccchhhHHHhcCCCchhHHHHHhHHHhhh-----hh
Q 003387 301 DIR---III---------------SFQFEDG-----ENMR-LDLVPTGGPLRATYKGRPFLILYHGSISLEEN-----IR 351 (824)
Q Consensus 301 ~~~---v~~---------------~f~~~~~-----~~~~-~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~~-----~~ 351 (824)
... ... .|...+. .... +--.+...+|.+.|+|.|+++..++..+.... ..
T Consensus 161 ~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~~ 240 (903)
T PRK04841 161 NLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEAAESSRLCDDVEGWATALQLIALSARQNNSSLHDSA 240 (903)
T ss_pred CCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhhh
Confidence 831 111 1221110 0001 11234567899999999999998876652111 11
Q ss_pred hhccC-CC-ccccccc---c-cCCCCchHHHhHhccCCCCceechhHHHHHHHHcCCCCCChHHHHHHHHHHHHhccccc
Q 003387 352 EAVET-PL-GLRYIKC---L-MLPFCLKPCFIYLSVFPAHQEISTRQLYQLWIAEGFIPDNSEATAESYLEQLIKEGFVE 425 (824)
Q Consensus 352 ~~~~~-~~-~~~~~l~---~-~L~~~lk~cfl~~s~fp~~~~i~~~~Li~~W~a~g~i~~~~e~~~~~~~~~Lv~rsllq 425 (824)
+.+.. .. .+...+. + .||+..+..++..|+++. ++. .+...-. | .+.+...+++|.+.+++.
T Consensus 241 ~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~~---~~~-~l~~~l~--~------~~~~~~~L~~l~~~~l~~ 308 (903)
T PRK04841 241 RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLRS---MND-ALIVRVT--G------EENGQMRLEELERQGLFI 308 (903)
T ss_pred HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccccc---CCH-HHHHHHc--C------CCcHHHHHHHHHHCCCee
Confidence 12211 11 2333221 2 899999999999999873 342 2222111 1 123578899999999875
Q ss_pred eeecCCCCcEEEEEcCccHHHHHHhh
Q 003387 426 AKKRKAGGTINTCSIPGRWRPVLHTV 451 (824)
Q Consensus 426 ~~~~~~~g~~~~~~mHdlv~dla~~~ 451 (824)
..... .+ ..|+.|++++++.+.-
T Consensus 309 ~~~~~-~~--~~yr~H~L~r~~l~~~ 331 (903)
T PRK04841 309 QRMDD-SG--EWFRYHPLFASFLRHR 331 (903)
T ss_pred EeecC-CC--CEEehhHHHHHHHHHH
Confidence 43211 11 3477899999998764
No 35
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.79 E-value=9.4e-07 Score=97.13 Aligned_cols=117 Identities=18% Similarity=0.097 Sum_probs=83.0
Q ss_pred CCCceechhhHHHHHHHHHcC--CCCeEEEEEEcCCCChHHHHHHHHhCCccccCCC------ceeEEEECCCCCCCCHH
Q 003387 155 SRDTVGLDDRMEELLDLLIEG--PPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYF------DCHAWITEPYSNEYDAD 226 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F------~~~~wv~~~vs~~~~~~ 226 (824)
++.++||++++++|...|... ......+.|+|++|+|||++++.++++ ..... -..+|+. .....+..
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~~~~v~in--~~~~~~~~ 89 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKE--LEEAAEDRDVRVVTVYVN--CQILDTLY 89 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhccCCceEEEEEE--CCCCCCHH
Confidence 458999999999999998752 223457899999999999999999983 32211 1356776 77666788
Q ss_pred HHHHHHHHHhCC-CCCcccccccCHHHHHHHHHHhcC--CCeEEEEEecCCCh
Q 003387 227 QILDIVIKFLMP-SSRLSEIMDKNYEMKKIILHEYLM--TKRYLIVIDDVWSI 276 (824)
Q Consensus 227 ~~~~~i~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~ 276 (824)
.++..|+.++.. ....+ ....+..+....+.+.+. +++++||||+++..
T Consensus 90 ~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 90 QVLVELANQLRGSGEEVP-TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred HHHHHHHHHHhhcCCCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence 899999999942 11111 122344556666666663 56899999999866
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.78 E-value=1.7e-09 Score=106.69 Aligned_cols=128 Identities=25% Similarity=0.357 Sum_probs=70.1
Q ss_pred hcCCCccEeecCCccccccchhhhccccCceecCCCccCCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCccceEEE
Q 003387 565 SNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKFCGSLENLNFISALHPCCCTEDILGRLPNLRNLRI 644 (824)
Q Consensus 565 ~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l 644 (824)
...+.|++|||++|.++.+-+++.-+|+++.|++++|.+.. +.. +..+++|..|++
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~-----------------------v~n-La~L~~L~~LDL 336 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT-----------------------VQN-LAELPQLQLLDL 336 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceee-----------------------ehh-hhhcccceEeec
Confidence 45677888888888888888888888888888888887641 112 566777788888
Q ss_pred ecccccchhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCccCcCCCceEEEEEcccCCC-CCcccccCCCCCCeEEee
Q 003387 645 RGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYLFPHSLTHLSFSNTDLMD-DPMPTLEKLPLLQVLKLK 723 (824)
Q Consensus 645 ~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~L~ 723 (824)
+++. ...+..+-.++-+++.|.+..|. ++. ++|...+-+|..|++++|++.. +....+|++|+|+.|.|.
T Consensus 337 S~N~---Ls~~~Gwh~KLGNIKtL~La~N~----iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 337 SGNL---LAECVGWHLKLGNIKTLKLAQNK----IET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred ccch---hHhhhhhHhhhcCEeeeehhhhh----Hhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhc
Confidence 7763 22222232333444444444431 221 1233344444445554444322 112234444444444444
Q ss_pred cc
Q 003387 724 QN 725 (824)
Q Consensus 724 ~~ 725 (824)
+|
T Consensus 408 ~N 409 (490)
T KOG1259|consen 408 GN 409 (490)
T ss_pred CC
Confidence 33
No 37
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.75 E-value=3.4e-07 Score=95.95 Aligned_cols=170 Identities=15% Similarity=0.142 Sum_probs=98.3
Q ss_pred HHHHHHHHHcC-CCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCcc
Q 003387 165 MEELLDLLIEG-PPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLS 243 (824)
Q Consensus 165 ~~~l~~~L~~~-~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~ 243 (824)
.+++++.+... ..+..++.|+|++|+||||+++.+++.... ..+ ..+|+. ....+..+++..|+..++....
T Consensus 28 ~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~~---~~~~~~~~~l~~i~~~lG~~~~-- 100 (269)
T TIGR03015 28 HKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKLV---NTRVDAEDLLRMVAADFGLETE-- 100 (269)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeeee---CCCCCHHHHHHHHHHHcCCCCC--
Confidence 34455554432 223568899999999999999999984321 111 233443 3456788999999998876422
Q ss_pred cccccCHHHHHHHHH----Hhc-CCCeEEEEEecCCCh--hhHHHHHhhCC---CCCCCcEEEEEechHHHHh-------
Q 003387 244 EIMDKNYEMKKIILH----EYL-MTKRYLIVIDDVWSI--DMWDVIQEILP---DNQNGSRVLITLTDIRIII------- 306 (824)
Q Consensus 244 ~~~~~~~~~~~~~l~----~~L-~~kr~LlVlDdv~~~--~~~~~l~~~~~---~~~~gs~ilvTtR~~~v~~------- 306 (824)
..+.......+. ... .+++++||+||+|.. ..++.+..... +......|++|.... ...
T Consensus 101 ---~~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~ 176 (269)
T TIGR03015 101 ---GRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQL 176 (269)
T ss_pred ---CCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchh
Confidence 122222333333 322 678899999999875 35665553222 112223445554322 111
Q ss_pred -----------------------hccc---ccCCcCcCcc-ccchhhHHHhcCCCchhHHHHHhHH
Q 003387 307 -----------------------SFQF---EDGENMRLDL-VPTGGPLRATYKGRPFLILYHGSIS 345 (824)
Q Consensus 307 -----------------------~f~~---~~~~~~~~~~-~~~~~~i~~~c~GlPlai~~~~~~l 345 (824)
.+.. ..+......+ .+..+.|++.++|.|..|..++..+
T Consensus 177 ~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 177 QQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 0000 0000111122 4567888999999999999988877
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.68 E-value=1.4e-08 Score=112.81 Aligned_cols=177 Identities=25% Similarity=0.232 Sum_probs=117.9
Q ss_pred hhcccCcccEEEeeCccCccCCccCCCCC-cceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCc
Q 003387 516 FCGMFKLLRVLDLGSLVLIQYPSGIENLF-LLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLR 594 (824)
Q Consensus 516 ~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~-~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~ 594 (824)
....++.+..|++.++.+..+|..++.+. +|++|+++++.+..+|..+ +.+++|+.|++++|.+..+|...+.+++|+
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhh-hccccccccccCCchhhhhhhhhhhhhhhh
Confidence 34455789999999999999998888885 9999999999999998777 999999999999999999998877999999
Q ss_pred eecCCCccCCCCCCC-CCCCCCCCCeeeccCC-CcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEec
Q 003387 595 HLNFGSITLPAHPGK-FCGSLENLNFISALHP-CCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLAN 672 (824)
Q Consensus 595 ~L~L~~~~~~~~~~p-~i~~L~~L~~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~ 672 (824)
.|++++|.+. .+| .++.+..|+.+.+..+ .......+.++.++..|.+.++. ...++..+
T Consensus 190 ~L~ls~N~i~--~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~---~~~~~~~~------------- 251 (394)
T COG4886 190 NLDLSGNKIS--DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK---LEDLPESI------------- 251 (394)
T ss_pred heeccCCccc--cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce---eeeccchh-------------
Confidence 9999999887 455 3344444666665533 12222224444444444433321 11112233
Q ss_pred cCCCCCccEEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccC
Q 003387 673 ESKMPRLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYS 728 (824)
Q Consensus 673 ~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~ 728 (824)
..+++|+.|++++|.+... .. ++.+.+|+.|+++++.+.
T Consensus 252 ---------------~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 252 ---------------GNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ---------------ccccccceecccccccccc-cc-ccccCccCEEeccCcccc
Confidence 3444556666666654322 11 556666666666655443
No 39
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.67 E-value=1.3e-08 Score=96.95 Aligned_cols=107 Identities=23% Similarity=0.260 Sum_probs=44.9
Q ss_pred CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCcc
Q 003387 492 DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLY 571 (824)
Q Consensus 492 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 571 (824)
+.++|.|.+.++.... +...-..+..|++|+|++|.|+.++ .+..+++|++|++++|.|+.+++.+...+++|+
T Consensus 18 ~~~~~~L~L~~n~I~~-----Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST-----IENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred cccccccccccccccc-----ccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 5567888888877652 2222236789999999999999886 478899999999999999999876634799999
Q ss_pred EeecCCccccccc--hhhhccccCceecCCCccCC
Q 003387 572 TLDMPFSYIDHTA--DEFWKMNKLRHLNFGSITLP 604 (824)
Q Consensus 572 ~L~L~~~~l~~lp--~~i~~L~~L~~L~L~~~~~~ 604 (824)
+|++++|.+..+- ..+..+++|++|++.+|.+.
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 9999999877653 34788999999999999876
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.57 E-value=5.7e-08 Score=108.04 Aligned_cols=194 Identities=27% Similarity=0.293 Sum_probs=139.4
Q ss_pred cEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCC-CccEeecCCccccccchhhhccccCceecCCCcc
Q 003387 524 RVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLL-NLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSIT 602 (824)
Q Consensus 524 r~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~-~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~ 602 (824)
..|++.++.+...+..+..+..+..|++.++.+..+|... +.+. +|+.|+++++.+..+|..++.+++|+.|++++|.
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 96 PSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred ceeeccccccccCchhhhcccceeEEecCCcccccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence 3578888877555556677789999999999999999988 7785 9999999999999998889999999999999998
Q ss_pred CCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCccEE
Q 003387 603 LPAHPGKFCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKI 682 (824)
Q Consensus 603 ~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l 682 (824)
+. .+|.. .+.+++|+.|.++++ ....+|........|++|.+..|. . .-
T Consensus 175 l~--~l~~~---------------------~~~~~~L~~L~ls~N---~i~~l~~~~~~~~~L~~l~~~~N~----~-~~ 223 (394)
T COG4886 175 LS--DLPKL---------------------LSNLSNLNNLDLSGN---KISDLPPEIELLSALEELDLSNNS----I-IE 223 (394)
T ss_pred hh--hhhhh---------------------hhhhhhhhheeccCC---ccccCchhhhhhhhhhhhhhcCCc----c-ee
Confidence 76 23210 225566666666666 444455444445556666666541 0 01
Q ss_pred EeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCC
Q 003387 683 VLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWL 753 (824)
Q Consensus 683 ~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 753 (824)
.+.....+.++..|.+.++.+. ..+..++.+++|+.|++++|.+... .. .+.+.+|+.|+++++...
T Consensus 224 ~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i--~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 224 LLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSI--SS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cchhhhhcccccccccCCceee-eccchhccccccceecccccccccc--cc-ccccCccCEEeccCcccc
Confidence 1122244566666777776643 3367788999999999998887652 22 778899999999987644
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.51 E-value=1.4e-08 Score=103.08 Aligned_cols=241 Identities=20% Similarity=0.164 Sum_probs=157.6
Q ss_pred CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCcc----CccCCc-------cCCCCCcceEEeecCCCCC---
Q 003387 492 DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLV----LIQYPS-------GIENLFLLRYLKLNIPSLN--- 557 (824)
Q Consensus 492 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~----i~~lp~-------~i~~l~~Lr~L~L~~~~i~--- 557 (824)
...+..+.++++....--...+...+.+-+.||..++++.- ...+|+ .+-.+++|++|+||.|-+.
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 66777778887776421123566788888899999998753 124453 3445679999999998766
Q ss_pred --ccChhhhhcCCCccEeecCCccccccchh--------------hhccccCceecCCCccCCCCCCCCCCCCCCCCeee
Q 003387 558 --SLPSSLLSNLLNLYTLDMPFSYIDHTADE--------------FWKMNKLRHLNFGSITLPAHPGKFCGSLENLNFIS 621 (824)
Q Consensus 558 --~lp~~i~~~L~~L~~L~L~~~~l~~lp~~--------------i~~L~~L~~L~L~~~~~~~~~~p~i~~L~~L~~l~ 621 (824)
.+-.- +.+++.|+.|.|.+|.+...... +.+-++||++..++|++.+.
T Consensus 109 ~~~l~~l-l~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~--------------- 172 (382)
T KOG1909|consen 109 IRGLEEL-LSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG--------------- 172 (382)
T ss_pred hHHHHHH-HHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc---------------
Confidence 23333 48899999999999987643221 23345677777777665421
Q ss_pred ccCCCcchhhhcCCCCccceEEEecccccc--hhhHHHHhccCCCCCeEEEeccCCCCCccEEEeC-ccCcCCCceEEEE
Q 003387 622 ALHPCCCTEDILGRLPNLRNLRIRGDLSYN--QSLLSKSLCRLSCLESLKLANESKMPRLSKIVLA-EYLFPHSLTHLSF 698 (824)
Q Consensus 622 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~-~~~~~~~L~~L~L 698 (824)
+...+...+...+.|+.+.+..+.... ...+...+..+++|+.|+|..|. +..--...+. -++.+++|+.|++
T Consensus 173 ---ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 173 ---GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred ---cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeecc
Confidence 123344446777888888887775222 23566778888888888888763 0000000000 0145678999999
Q ss_pred EcccCCCCCcccc-----cCCCCCCeEEeeccccCCCe---eeecCCCCCCccEEeeccCCC
Q 003387 699 SNTDLMDDPMPTL-----EKLPLLQVLKLKQNSYSGRK---LTCGSYGFPNLKVLHLKSMLW 752 (824)
Q Consensus 699 ~~~~l~~~~~~~l-----~~l~~L~~L~L~~~~~~~~~---~~~~~~~~~~L~~L~L~~~~~ 752 (824)
+.|.+.......+ ...|+|+.|.+.+|.++.+. +.......|.|+.|+|++|..
T Consensus 249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 9998765544333 24899999999998875432 222345589999999999873
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.51 E-value=1.5e-08 Score=100.06 Aligned_cols=127 Identities=20% Similarity=0.237 Sum_probs=91.6
Q ss_pred hcccCcccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCcee
Q 003387 517 CGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHL 596 (824)
Q Consensus 517 ~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 596 (824)
......|..||||+|.|+.+-+++.-++.+|.|+++.|++..+.. + ..|++|+.|||++|.+.++-..-.+|-|.+.|
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-L-a~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-L-AELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-h-hhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 344567888899999888888888888889999999988887766 5 78888999999988877776555577788888
Q ss_pred cCCCccCCCCCCCCCCCCCCCCeeeccCCC----cchhhhcCCCCccceEEEeccc
Q 003387 597 NFGSITLPAHPGKFCGSLENLNFISALHPC----CCTEDILGRLPNLRNLRIRGDL 648 (824)
Q Consensus 597 ~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~ 648 (824)
.|+.|.+. .+.++++|-+|..|++..+. ..... +++++.|+.|.+.++.
T Consensus 358 ~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~-IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 358 KLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNH-IGNLPCLETLRLTGNP 410 (490)
T ss_pred ehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcc-cccccHHHHHhhcCCC
Confidence 88888765 44466666666666665221 12223 6666777666666654
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=5.3e-09 Score=103.37 Aligned_cols=169 Identities=21% Similarity=0.167 Sum_probs=122.1
Q ss_pred CcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCc-cCcCCCceEEEEEcccCC
Q 003387 626 CCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAE-YLFPHSLTHLSFSNTDLM 704 (824)
Q Consensus 626 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~-~~~~~~L~~L~L~~~~l~ 704 (824)
...+..++..|.+|+.|++.+.. ..+.+...+.+..+|+.|+|+... .++...+.- +.+|+.|..|+|+.|.+.
T Consensus 199 ~stl~~iLs~C~kLk~lSlEg~~--LdD~I~~~iAkN~~L~~lnlsm~s---G~t~n~~~ll~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 199 VSTLHGILSQCSKLKNLSLEGLR--LDDPIVNTIAKNSNLVRLNLSMCS---GFTENALQLLLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred HHHHHHHHHHHHhhhhccccccc--cCcHHHHHHhccccceeecccccc---ccchhHHHHHHHhhhhHhhcCchHhhcc
Confidence 34445558889999999999987 677788889999999999998632 222222111 156889999999999876
Q ss_pred CCCccccc--CCCCCCeEEeecccc--CCCeeeecCCCCCCccEEeeccCCCCccce-eccCcccCccEEEEecCCCCCC
Q 003387 705 DDPMPTLE--KLPLLQVLKLKQNSY--SGRKLTCGSYGFPNLKVLHLKSMLWLEEWT-MGNAAMPKLECLIINPCAYLKK 779 (824)
Q Consensus 705 ~~~~~~l~--~l~~L~~L~L~~~~~--~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~lp~L~~L~l~~c~~l~~ 779 (824)
.+....+- --++|..|+|+++.- ....+..-...+|+|..|+|++|..++.-. ..+..|+-|++|.++.|..+.
T Consensus 274 ~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~- 352 (419)
T KOG2120|consen 274 TEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII- 352 (419)
T ss_pred chhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC-
Confidence 54433221 246899999998642 222233334579999999999998777532 346679999999999999653
Q ss_pred Ccc---ccccCccCcEEEecCCcHH
Q 003387 780 MPE---QLWYIKSLNKFDCWWPQPE 801 (824)
Q Consensus 780 lp~---~l~~l~~L~~L~l~~c~~~ 801 (824)
|. .+...|+|..|++.||-..
T Consensus 353 -p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 353 -PETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred -hHHeeeeccCcceEEEEeccccCc
Confidence 43 4567799999999998755
No 44
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.49 E-value=2e-07 Score=94.74 Aligned_cols=95 Identities=13% Similarity=-0.012 Sum_probs=63.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCC--CCHHHHHHHHHHHhCCCC-Cccccccc-CHHHHH
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNE--YDADQILDIVIKFLMPSS-RLSEIMDK-NYEMKK 254 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~--~~~~~~~~~i~~~l~~~~-~~~~~~~~-~~~~~~ 254 (824)
-..++|+|++|+|||||++.+|++.... +|+.++|++ ++++ +++.++++++...+-... +.+..... -.....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~--vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVL--LIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEE--EccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 4588999999999999999999964444 899999999 8887 899999999933322111 00101111 111222
Q ss_pred HHHHHh-cCCCeEEEEEecCCCh
Q 003387 255 IILHEY-LMTKRYLIVIDDVWSI 276 (824)
Q Consensus 255 ~~l~~~-L~~kr~LlVlDdv~~~ 276 (824)
.....+ -+++++++++|++..-
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHHh
Confidence 222222 2589999999999654
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.47 E-value=8.9e-08 Score=74.83 Aligned_cols=58 Identities=29% Similarity=0.388 Sum_probs=30.0
Q ss_pred cceEEeecCCCCCccChhhhhcCCCccEeecCCccccccch-hhhccccCceecCCCcc
Q 003387 545 LLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTAD-EFWKMNKLRHLNFGSIT 602 (824)
Q Consensus 545 ~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~ 602 (824)
+|++|++++|++..+|...|.++++|++|++++|.+..+|. .|..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555555554444555555555555555555543 24555555555555543
No 46
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.43 E-value=2.2e-08 Score=107.44 Aligned_cols=162 Identities=22% Similarity=0.205 Sum_probs=123.4
Q ss_pred cccccc--CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhh
Q 003387 486 ACLDDY--DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSL 563 (824)
Q Consensus 486 ~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i 563 (824)
+++..+ +-.|.++.+..+... ..+..+..+..|.+|+|+.|.++.+|..++.|+ |+.|-+++|+++.+|..+
T Consensus 89 elp~~~~~f~~Le~liLy~n~~r-----~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~i 162 (722)
T KOG0532|consen 89 ELPEEACAFVSLESLILYHNCIR-----TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEI 162 (722)
T ss_pred cCchHHHHHHHHHHHHHHhccce-----ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCccc
Confidence 355555 677777777776654 356778888889999999999998998888764 888999999999999998
Q ss_pred hhcCCCccEeecCCccccccchhhhccccCceecCCCccCCCCCCC-CCCCCCCCCeeecc-CCCcchhhhcCCCCccce
Q 003387 564 LSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGK-FCGSLENLNFISAL-HPCCCTEDILGRLPNLRN 641 (824)
Q Consensus 564 ~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~~~p-~i~~L~~L~~l~~~-~~~~~~~~~l~~l~~L~~ 641 (824)
+.+..|..||.+.|.+..+|..++.+.+|+.|++..|++. .+| .+..| .|..|+++ +....++--+.+|+.|+.
T Consensus 163 -g~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~--~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~ 238 (722)
T KOG0532|consen 163 -GLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE--DLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQV 238 (722)
T ss_pred -ccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh--hCCHHHhCC-ceeeeecccCceeecchhhhhhhhhee
Confidence 8888899999999999999998999999999988888876 566 66533 36677777 233333333888999999
Q ss_pred EEEecccccchhhHHHHhc
Q 003387 642 LRIRGDLSYNQSLLSKSLC 660 (824)
Q Consensus 642 L~l~~~~~~~~~~l~~~l~ 660 (824)
|.+.++ -..+-|+.+.
T Consensus 239 l~LenN---PLqSPPAqIC 254 (722)
T KOG0532|consen 239 LQLENN---PLQSPPAQIC 254 (722)
T ss_pred eeeccC---CCCCChHHHH
Confidence 998887 3444455444
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.43 E-value=1.7e-07 Score=73.19 Aligned_cols=60 Identities=35% Similarity=0.417 Sum_probs=53.7
Q ss_pred CcccEEEeeCccCccCCc-cCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccc
Q 003387 521 KLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYI 580 (824)
Q Consensus 521 ~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l 580 (824)
++|++|++++|.++.+|. .+..+++|++|++++|.+..+|+..|.++++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 578999999999998885 678899999999999999999987779999999999999864
No 48
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.42 E-value=1.2e-06 Score=89.67 Aligned_cols=55 Identities=25% Similarity=0.294 Sum_probs=40.6
Q ss_pred ceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEE
Q 003387 158 TVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIT 216 (824)
Q Consensus 158 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~ 216 (824)
++||++++++|.+++..+. ...+.|+|+.|+|||+|++.+.+ ..+..-..++|+.
T Consensus 1 F~gR~~el~~l~~~l~~~~--~~~~~l~G~rg~GKTsLl~~~~~--~~~~~~~~~~y~~ 55 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP--SQHILLYGPRGSGKTSLLKEFIN--ELKEKGYKVVYID 55 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHH--HCT--EECCCHHC
T ss_pred CCCHHHHHHHHHHHHHhhc--CcEEEEEcCCcCCHHHHHHHHHH--HhhhcCCcEEEEe
Confidence 6899999999999998764 66899999999999999999999 4433222455555
No 49
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.42 E-value=1.7e-08 Score=104.51 Aligned_cols=278 Identities=15% Similarity=0.084 Sum_probs=158.2
Q ss_pred CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCcc-Cc-cCCccC-CCCCcceEEeecCCC-CC--ccChhhhh
Q 003387 492 DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLV-LI-QYPSGI-ENLFLLRYLKLNIPS-LN--SLPSSLLS 565 (824)
Q Consensus 492 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~-i~-~lp~~i-~~l~~Lr~L~L~~~~-i~--~lp~~i~~ 565 (824)
|+++..|.+.++... .......+-..|++|++|+|.+|. ++ ...+.+ ..+++|.||++++|. |. .+-.-. .
T Consensus 163 CpnIehL~l~gc~~i--Td~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~-r 239 (483)
T KOG4341|consen 163 CPNIEHLALYGCKKI--TDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQ-R 239 (483)
T ss_pred CCchhhhhhhcceec--cHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHh-c
Confidence 666666666655532 233445555667777777777754 44 222222 236667777777654 33 122222 5
Q ss_pred cCCCccEeecCCcc-cc--ccchhhhccccCceecCCCccCCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCccceE
Q 003387 566 NLLNLYTLDMPFSY-ID--HTADEFWKMNKLRHLNFGSITLPAHPGKFCGSLENLNFISALHPCCCTEDILGRLPNLRNL 642 (824)
Q Consensus 566 ~L~~L~~L~L~~~~-l~--~lp~~i~~L~~L~~L~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L 642 (824)
++.+|+.+.+++|. +. .+-..=..+.-+..+++..|.. ++ ...+..+-..+..|+.|
T Consensus 240 G~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~------------------lT--D~~~~~i~~~c~~lq~l 299 (483)
T KOG4341|consen 240 GCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQ------------------LT--DEDLWLIACGCHALQVL 299 (483)
T ss_pred cchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcc------------------cc--chHHHHHhhhhhHhhhh
Confidence 56666666666652 11 1111111223333343333321 11 11222223456778888
Q ss_pred EEecccccchhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCcc-CcCCCceEEEEEcccCCCCC--cccccCCCCCCe
Q 003387 643 RIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEY-LFPHSLTHLSFSNTDLMDDP--MPTLEKLPLLQV 719 (824)
Q Consensus 643 ~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~-~~~~~L~~L~L~~~~l~~~~--~~~l~~l~~L~~ 719 (824)
..+++.......+-+--.++.+|+.|.++. +.++..-.+..+ .+++.|+.+++..|....+. ...-.++|.|+.
T Consensus 300 ~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~---c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ 376 (483)
T KOG4341|consen 300 CYSSCTDITDEVLWALGQHCHNLQVLELSG---CQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV 376 (483)
T ss_pred cccCCCCCchHHHHHHhcCCCceEEEeccc---cchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence 888876544444545555667888888873 344443333322 56788999999988643222 222347999999
Q ss_pred EEeeccccCCCe----eeecCCCCCCccEEeeccCCCCccce-eccCcccCccEEEEecCCCCCCCc--cccccCccCcE
Q 003387 720 LKLKQNSYSGRK----LTCGSYGFPNLKVLHLKSMLWLEEWT-MGNAAMPKLECLIINPCAYLKKMP--EQLWYIKSLNK 792 (824)
Q Consensus 720 L~L~~~~~~~~~----~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~lp~L~~L~l~~c~~l~~lp--~~l~~l~~L~~ 792 (824)
|.++.|....+. +.....+...|+.|.+.+|+.+.+-. .....+++|+.+++-+|.....-| ....++|+++.
T Consensus 377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v 456 (483)
T KOG4341|consen 377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKV 456 (483)
T ss_pred CChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCcccee
Confidence 999987654332 11223457789999999998766432 235578999999999998765433 23456777665
Q ss_pred EEe
Q 003387 793 FDC 795 (824)
Q Consensus 793 L~l 795 (824)
...
T Consensus 457 ~a~ 459 (483)
T KOG4341|consen 457 HAY 459 (483)
T ss_pred hhh
Confidence 543
No 50
>PF05729 NACHT: NACHT domain
Probab=98.42 E-value=7.9e-07 Score=85.59 Aligned_cols=114 Identities=19% Similarity=0.248 Sum_probs=67.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCccccCC----CceeEEEECCCCCCCCHH---HHHHHHHHHhCCCCCcccccccCHHH
Q 003387 180 SVVAILDSIGLDKTAFAGEAYNSSYVKHY----FDCHAWITEPYSNEYDAD---QILDIVIKFLMPSSRLSEIMDKNYEM 252 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~----F~~~~wv~~~vs~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~ 252 (824)
+++.|+|.+|+||||+++.++.+-..... +...+|+. .+...+.. .+...|..+...... ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~-------~~~~ 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFS--LRDISDSNNSRSLADLLFDQLPESIA-------PIEE 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEe--ehhhhhccccchHHHHHHHhhccchh-------hhHH
Confidence 57899999999999999999884222222 45566776 44332222 344444444432211 1111
Q ss_pred HHHHHHHhc-CCCeEEEEEecCCChhh---------HHHHH-hhCCC-CCCCcEEEEEechHHHH
Q 003387 253 KKIILHEYL-MTKRYLIVIDDVWSIDM---------WDVIQ-EILPD-NQNGSRVLITLTDIRII 305 (824)
Q Consensus 253 ~~~~l~~~L-~~kr~LlVlDdv~~~~~---------~~~l~-~~~~~-~~~gs~ilvTtR~~~v~ 305 (824)
.+...+ +.++++||+|++++... +..+. ..++. ..++++++||+|.....
T Consensus 72 ---~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~ 133 (166)
T PF05729_consen 72 ---LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFP 133 (166)
T ss_pred ---HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHH
Confidence 222222 57899999999976432 22222 22332 35689999999987663
No 51
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.39 E-value=2.7e-06 Score=79.83 Aligned_cols=122 Identities=18% Similarity=0.188 Sum_probs=72.2
Q ss_pred eechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCC
Q 003387 159 VGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMP 238 (824)
Q Consensus 159 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~ 238 (824)
+|++..++.+...+.... .+.+.|+|.+|+||||+|+.+++ .....-..++++. .++..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~--~~~v~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~~--- 71 (151)
T cd00009 1 VGQEEAIEALREALELPP--PKNLLLYGPPGTGKTTLARAIAN--ELFRPGAPFLYLN--ASDLLEGLVVAELFGHF--- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHH--HhhcCCCCeEEEe--hhhhhhhhHHHHHhhhh---
Confidence 377888888888887643 56888999999999999999999 3322223456666 44432222211111000
Q ss_pred CCCcccccccCHHHHHHHHHHhcCCCeEEEEEecCCCh-----hhHHHHHhhCCCC---CCCcEEEEEechH
Q 003387 239 SSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWSI-----DMWDVIQEILPDN---QNGSRVLITLTDI 302 (824)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~-----~~~~~l~~~~~~~---~~gs~ilvTtR~~ 302 (824)
............+..+||+||++.. ..+..+....... ..+..||+||...
T Consensus 72 -------------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 -------------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred -------------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 0111112233457789999999853 2233333333221 3578888888765
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=1e-07 Score=94.39 Aligned_cols=92 Identities=24% Similarity=0.177 Sum_probs=54.5
Q ss_pred hhHhhhcccCcccEEEeeCccCc---cCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCcc--ccccchh
Q 003387 512 DWEKFCGMFKLLRVLDLGSLVLI---QYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSY--IDHTADE 586 (824)
Q Consensus 512 ~~~~~~~~~~~Lr~L~L~~~~i~---~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~--l~~lp~~ 586 (824)
....+-..+..++.|||.+|.|+ .+..-+.+|++|++|+|+.|++..--.+.-..+.+|++|-|.++. .+..-..
T Consensus 62 d~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~ 141 (418)
T KOG2982|consen 62 DVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSS 141 (418)
T ss_pred hHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhh
Confidence 34445566777777777777765 333344567777777777776542111110234577777777763 3344455
Q ss_pred hhccccCceecCCCccC
Q 003387 587 FWKMNKLRHLNFGSITL 603 (824)
Q Consensus 587 i~~L~~L~~L~L~~~~~ 603 (824)
+..+|+++.|+++.|.+
T Consensus 142 l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 142 LDDLPKVTELHMSDNSL 158 (418)
T ss_pred hhcchhhhhhhhccchh
Confidence 66677777776665543
No 53
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.33 E-value=5.7e-07 Score=95.02 Aligned_cols=106 Identities=14% Similarity=0.055 Sum_probs=66.7
Q ss_pred HHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCC--CHHHHHHHHHHHhCCCC-Ccc
Q 003387 167 ELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEY--DADQILDIVIKFLMPSS-RLS 243 (824)
Q Consensus 167 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~--~~~~~~~~i~~~l~~~~-~~~ 243 (824)
++++++..=. .-...+|+|++|+||||||+.||++.... +|+.++||. +++.+ ++.+++++|...+-.+. +.+
T Consensus 158 rvID~l~PIG-kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~Vv--LIgER~~EVtdiqrsIlg~vv~st~d~~ 233 (416)
T PRK09376 158 RIIDLIAPIG-KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVL--LIDERPEEVTDMQRSVKGEVVASTFDEP 233 (416)
T ss_pred eeeeeecccc-cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEE--EeCCchhHHHHHHHHhcCcEEEECCCCC
Confidence 4555554311 23567899999999999999999964433 899999999 99888 77888888863221111 100
Q ss_pred cccccCHHHHHHHHHHh--cCCCeEEEEEecCCCh
Q 003387 244 EIMDKNYEMKKIILHEY--LMTKRYLIVIDDVWSI 276 (824)
Q Consensus 244 ~~~~~~~~~~~~~l~~~--L~~kr~LlVlDdv~~~ 276 (824)
.....-....+....++ -.+++++|++|++..-
T Consensus 234 ~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 234 AERHVQVAEMVIEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHHH
Confidence 00000111112222222 2679999999999654
No 54
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.33 E-value=1.1e-06 Score=81.04 Aligned_cols=113 Identities=12% Similarity=0.185 Sum_probs=78.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCC-----CceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCcccccccCHHHH
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHY-----FDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMK 253 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~-----F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 253 (824)
-+++.|+|.+|+|||++++.+.++ .... -..++|+. ++...+...+...|+.+++.... ...+..++
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~l 75 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVN--CPSSRTPRDFAQEILEALGLPLK----SRQTSDEL 75 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEE--HHHHSSHHHHHHHHHHHHT-SSS----STS-HHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEE--eCCCCCHHHHHHHHHHHhCcccc----ccCCHHHH
Confidence 578999999999999999999984 2221 34567998 87777899999999999998653 23456777
Q ss_pred HHHHHHhcCCC-eEEEEEecCCCh---hhHHHHHhhCCCCCCCcEEEEEech
Q 003387 254 KIILHEYLMTK-RYLIVIDDVWSI---DMWDVIQEILPDNQNGSRVLITLTD 301 (824)
Q Consensus 254 ~~~l~~~L~~k-r~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~ilvTtR~ 301 (824)
...+.+.+... ..+||+||+... ..++.+..... ..+.++|+.-+.
T Consensus 76 ~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 76 RSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 78888888654 469999999754 34555544333 556677766543
No 55
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.25 E-value=1e-05 Score=91.98 Aligned_cols=265 Identities=15% Similarity=0.153 Sum_probs=160.6
Q ss_pred HHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCC-CCHHHHHHHHHHHhCCCCCcc
Q 003387 165 MEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNE-YDADQILDIVIKFLMPSSRLS 243 (824)
Q Consensus 165 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~-~~~~~~~~~i~~~l~~~~~~~ 243 (824)
..++.+.|..+. +.+.+-|.-++|.|||||+..... +. ..=..+.|.. ..++ -|+.+....++..++.-.+..
T Consensus 24 R~rL~~~L~~~~-~~RL~li~APAGfGKttl~aq~~~--~~-~~~~~v~Wls--lde~dndp~rF~~yLi~al~~~~p~~ 97 (894)
T COG2909 24 RPRLLDRLRRAN-DYRLILISAPAGFGKTTLLAQWRE--LA-ADGAAVAWLS--LDESDNDPARFLSYLIAALQQATPTL 97 (894)
T ss_pred cHHHHHHHhcCC-CceEEEEeCCCCCcHHHHHHHHHH--hc-CcccceeEee--cCCccCCHHHHHHHHHHHHHHhCccc
Confidence 456777776653 589999999999999999988865 11 1223688998 6544 477788888888887422100
Q ss_pred --------c-ccccCHHHHHHHHHHhcCC--CeEEEEEecCCCh---hhHHHHHhhCCCCCCCcEEEEEechHH---HHh
Q 003387 244 --------E-IMDKNYEMKKIILHEYLMT--KRYLIVIDDVWSI---DMWDVIQEILPDNQNGSRVLITLTDIR---III 306 (824)
Q Consensus 244 --------~-~~~~~~~~~~~~l~~~L~~--kr~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~ilvTtR~~~---v~~ 306 (824)
+ ....+...+...+...|.. ++..+||||---. .--+.+...+....++=..+||||+.- +++
T Consensus 98 ~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~ 177 (894)
T COG2909 98 GDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLAR 177 (894)
T ss_pred cHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccc
Confidence 0 2233455566666666654 6899999997543 223334444445556778999999863 222
Q ss_pred ---------------hcccccCC------cCcCccccchhhHHHhcCCCchhHHHHHhHHH-hhhhhhhc---cCCC-cc
Q 003387 307 ---------------SFQFEDGE------NMRLDLVPTGGPLRATYKGRPFLILYHGSISL-EENIREAV---ETPL-GL 360 (824)
Q Consensus 307 ---------------~f~~~~~~------~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~-~~~~~~~~---~~~~-~~ 360 (824)
+|..+... ...+--+...+.+.+...|.+-|+..++-.+- ..+....+ ++.. .+
T Consensus 178 lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~~l 257 (894)
T COG2909 178 LRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGAASHL 257 (894)
T ss_pred eeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccchHHHH
Confidence 33333210 11122233456666777777766666555442 01111111 1111 11
Q ss_pred cccccc----cCCCCchHHHhHhccCCCCceechhHHHHHHHHcCCCCCChHHHHHHHHHHHHhccccceeecCCCCcEE
Q 003387 361 RYIKCL----MLPFCLKPCFIYLSVFPAHQEISTRQLYQLWIAEGFIPDNSEATAESYLEQLIKEGFVEAKKRKAGGTIN 436 (824)
Q Consensus 361 ~~~l~~----~L~~~lk~cfl~~s~fp~~~~i~~~~Li~~W~a~g~i~~~~e~~~~~~~~~Lv~rsllq~~~~~~~g~~~ 436 (824)
.+-|.- .||+++|.-.+-||+++.= -++|+..-. .++-|...+++|..++|+-..-.+.. .
T Consensus 258 ~dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~Lt--------g~~ng~amLe~L~~~gLFl~~Ldd~~---~ 322 (894)
T COG2909 258 SDYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNALT--------GEENGQAMLEELERRGLFLQRLDDEG---Q 322 (894)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHHh--------cCCcHHHHHHHHHhCCCceeeecCCC---c
Confidence 111111 7899999999999988652 134444333 23458899999999998875443222 4
Q ss_pred EEEcCccHHHHHHh
Q 003387 437 TCSIPGRWRPVLHT 450 (824)
Q Consensus 437 ~~~mHdlv~dla~~ 450 (824)
-|+.|.+..||-+.
T Consensus 323 WfryH~LFaeFL~~ 336 (894)
T COG2909 323 WFRYHHLFAEFLRQ 336 (894)
T ss_pred eeehhHHHHHHHHh
Confidence 58999999998776
No 56
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.25 E-value=1.6e-07 Score=104.63 Aligned_cols=241 Identities=24% Similarity=0.222 Sum_probs=112.9
Q ss_pred cCcccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCceecCC
Q 003387 520 FKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFG 599 (824)
Q Consensus 520 ~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~ 599 (824)
+..+..+++..+.+...-..++.+.+|.+|++.+|.|..+...+ ..+++|++|++++|.|+.+.. +..++.|+.|+++
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l-~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLL-SSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLS 148 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccch-hhhhcchheeccccccccccc-hhhccchhhheec
Confidence 34444444555555443333555555555555555555554433 555555555555555555543 4455555555555
Q ss_pred CccCCCCCCCCCCCCCCCCeeeccCCCcchhhh--cCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCC
Q 003387 600 SITLPAHPGKFCGSLENLNFISALHPCCCTEDI--LGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMP 677 (824)
Q Consensus 600 ~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~ 677 (824)
+|.+. .++++..+.+|+.++++.+.....+. +..+.+|+.+.+.++...... .+..+..+..+++..|
T Consensus 149 ~N~i~--~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~----~~~~~~~l~~~~l~~n---- 218 (414)
T KOG0531|consen 149 GNLIS--DISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE----GLDLLKKLVLLSLLDN---- 218 (414)
T ss_pred cCcch--hccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc----chHHHHHHHHhhcccc----
Confidence 55554 33344444444444444322222221 245556666666655311111 1111111222222222
Q ss_pred CccEEEeCccCcCCC--ceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCcc
Q 003387 678 RLSKIVLAEYLFPHS--LTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEE 755 (824)
Q Consensus 678 ~L~~l~l~~~~~~~~--L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 755 (824)
.+.. +.+...+.. |+.++++++.+.. .+..+..++++..|++.++.+... .....++.+..+....++....
T Consensus 219 ~i~~--~~~l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 292 (414)
T KOG0531|consen 219 KISK--LEGLNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL---EGLERLPKLSELWLNDNKLALS 292 (414)
T ss_pred ccee--ccCcccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc---ccccccchHHHhccCcchhcch
Confidence 1111 112122222 6777777776532 224556677777777776655431 1223445555555555442211
Q ss_pred c---ee-ccCcccCccEEEEecCCCCC
Q 003387 756 W---TM-GNAAMPKLECLIINPCAYLK 778 (824)
Q Consensus 756 l---~~-~~~~lp~L~~L~l~~c~~l~ 778 (824)
+ .. .....+.++.+.+.+++.-.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 293 EAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred hhhhccccccccccccccccccCcccc
Confidence 1 11 14456677777777766433
No 57
>PF13173 AAA_14: AAA domain
Probab=98.24 E-value=2.5e-06 Score=78.03 Aligned_cols=101 Identities=14% Similarity=0.230 Sum_probs=68.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHHHH
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILH 258 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 258 (824)
-+++.|.|+-|+||||++++++++.. ....+++++ .......... +.+ ....+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~--~~~~~~~~~~--------------------~~~-~~~~~~ 55 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYIN--FDDPRDRRLA--------------------DPD-LLEYFL 55 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeec--cCCHHHHHHh--------------------hhh-hHHHHH
Confidence 46899999999999999999998422 334566666 3332110000 000 223333
Q ss_pred HhcCCCeEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEechHHHH
Q 003387 259 EYLMTKRYLIVIDDVWSIDMWDVIQEILPDNQNGSRVLITLTDIRII 305 (824)
Q Consensus 259 ~~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~ 305 (824)
+....++.+|++|++....+|......+.+..+..+|++|+.+....
T Consensus 56 ~~~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l 102 (128)
T PF13173_consen 56 ELIKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLL 102 (128)
T ss_pred HhhccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHH
Confidence 33444788899999999989988888777766778999999887655
No 58
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.24 E-value=1.2e-06 Score=86.07 Aligned_cols=46 Identities=22% Similarity=0.258 Sum_probs=32.1
Q ss_pred CceechhhHHHHHHHHHc-CCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 003387 157 DTVGLDDRMEELLDLLIE-GPPQLSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 157 ~~vGr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
++|||+++.+++...|.. .....+.+.|+|.+|+|||||++.++..
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999952 2345799999999999999999999884
No 59
>PLN03150 hypothetical protein; Provisional
Probab=98.22 E-value=2.4e-06 Score=99.79 Aligned_cols=86 Identities=23% Similarity=0.356 Sum_probs=72.1
Q ss_pred cccEEEeeCccCc-cCCccCCCCCcceEEeecCCCCC-ccChhhhhcCCCccEeecCCcccc-ccchhhhccccCceecC
Q 003387 522 LLRVLDLGSLVLI-QYPSGIENLFLLRYLKLNIPSLN-SLPSSLLSNLLNLYTLDMPFSYID-HTADEFWKMNKLRHLNF 598 (824)
Q Consensus 522 ~Lr~L~L~~~~i~-~lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~L 598 (824)
.++.|+|+++.+. .+|..++++++|++|+|++|.+. .+|..+ +.+++|++|+|++|.+. .+|..+++|++|++|+|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHH-hCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 3778889988887 78888899999999999998887 777777 89999999999999776 67888899999999999
Q ss_pred CCccCCCCCCC
Q 003387 599 GSITLPAHPGK 609 (824)
Q Consensus 599 ~~~~~~~~~~p 609 (824)
++|.+.+ .+|
T Consensus 498 s~N~l~g-~iP 507 (623)
T PLN03150 498 NGNSLSG-RVP 507 (623)
T ss_pred cCCcccc-cCC
Confidence 9888764 444
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=6e-07 Score=89.12 Aligned_cols=83 Identities=17% Similarity=0.204 Sum_probs=46.7
Q ss_pred cccEEEeeCccCccCC--ccCC-CCCcceEEeecCCCCCccC--hhhhhcCCCccEeecCCccccccchhh-hccccCce
Q 003387 522 LLRVLDLGSLVLIQYP--SGIE-NLFLLRYLKLNIPSLNSLP--SSLLSNLLNLYTLDMPFSYIDHTADEF-WKMNKLRH 595 (824)
Q Consensus 522 ~Lr~L~L~~~~i~~lp--~~i~-~l~~Lr~L~L~~~~i~~lp--~~i~~~L~~L~~L~L~~~~l~~lp~~i-~~L~~L~~ 595 (824)
.+..|.+.++.|...- ..|+ ...+++.|+|.+|.|+.-. ..|+.+|+.|++|+|+.|.+..-...+ -.+.+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 3445666666665222 2233 3567777777777776322 123357777777777777544322211 24557777
Q ss_pred ecCCCccCC
Q 003387 596 LNFGSITLP 604 (824)
Q Consensus 596 L~L~~~~~~ 604 (824)
|-|.++.++
T Consensus 126 lVLNgT~L~ 134 (418)
T KOG2982|consen 126 LVLNGTGLS 134 (418)
T ss_pred EEEcCCCCC
Confidence 766666654
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.17 E-value=1.1e-07 Score=93.02 Aligned_cols=249 Identities=18% Similarity=0.144 Sum_probs=161.2
Q ss_pred cccCcccEEEeeCccCc-----cCCccCCCCCcceEEeecCCCCC----ccChhh------hhcCCCccEeecCCcccc-
Q 003387 518 GMFKLLRVLDLGSLVLI-----QYPSGIENLFLLRYLKLNIPSLN----SLPSSL------LSNLLNLYTLDMPFSYID- 581 (824)
Q Consensus 518 ~~~~~Lr~L~L~~~~i~-----~lp~~i~~l~~Lr~L~L~~~~i~----~lp~~i------~~~L~~L~~L~L~~~~l~- 581 (824)
..+..+..++||||.|. .+-..|.+-.+|+..+++.-... ++|+++ +-+|++|++.+||.|.+.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 34788889999999875 45566777788998888863222 344332 368999999999999433
Q ss_pred ccc----hhhhccccCceecCCCccCCCCCCCCCCCCC-CCCeeeccCCCcchhhhcCCCCccceEEEeccc--ccchhh
Q 003387 582 HTA----DEFWKMNKLRHLNFGSITLPAHPGKFCGSLE-NLNFISALHPCCCTEDILGRLPNLRNLRIRGDL--SYNQSL 654 (824)
Q Consensus 582 ~lp----~~i~~L~~L~~L~L~~~~~~~~~~p~i~~L~-~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~ 654 (824)
+.| +.|++-+.|.||.+++|.+.. +. =+++- .|.+|... .. ...-|.|+...+..++ +.....
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp--~a-G~rigkal~~la~n------KK-aa~kp~Le~vicgrNRlengs~~~ 176 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGP--IA-GGRIGKALFHLAYN------KK-AADKPKLEVVICGRNRLENGSKEL 176 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCc--cc-hhHHHHHHHHHHHH------hh-hccCCCceEEEeccchhccCcHHH
Confidence 334 346778899999998886641 11 11111 02222111 11 3445677777776664 112233
Q ss_pred HHHHhccCCCCCeEEEeccC-CCCCccEEEeCccCcCCCceEEEEEcccCCCCCc----ccccCCCCCCeEEeeccccCC
Q 003387 655 LSKSLCRLSCLESLKLANES-KMPRLSKIVLAEYLFPHSLTHLSFSNTDLMDDPM----PTLEKLPLLQVLKLKQNSYSG 729 (824)
Q Consensus 655 l~~~l~~l~~L~~L~l~~~~-~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~----~~l~~l~~L~~L~L~~~~~~~ 729 (824)
....+....+|+.+.+..|. .+..+..|.+.|...+.+|+.|+|..|.++.... ..+..++.|++|.+.+|-+..
T Consensus 177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 33445555789999998875 4445666666677888999999999998764432 235567889999999887664
Q ss_pred Ceee-----ecCCCCCCccEEeeccCCCCccc-------eeccCcccCccEEEEecCCC
Q 003387 730 RKLT-----CGSYGFPNLKVLHLKSMLWLEEW-------TMGNAAMPKLECLIINPCAY 776 (824)
Q Consensus 730 ~~~~-----~~~~~~~~L~~L~L~~~~~l~~l-------~~~~~~lp~L~~L~l~~c~~ 776 (824)
.... +.-..+|+|..|.+.++..-..+ .+..+++|-|..|.+.+|..
T Consensus 257 ~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 257 EGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred ccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 3211 12235899999988876532221 12456789999999998874
No 62
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.14 E-value=2.5e-05 Score=84.13 Aligned_cols=250 Identities=15% Similarity=0.061 Sum_probs=124.0
Q ss_pred CCCceechhhHHHHHHHHHc---CCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHH
Q 003387 155 SRDTVGLDDRMEELLDLLIE---GPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDI 231 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~ 231 (824)
-.+++|++..++.+..++.. .......+.|+|++|+||||+|+.+.+ +....|. ++. .+ ......-+..
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~--~l~~~~~---~~~--~~-~~~~~~~l~~ 95 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIAN--EMGVNIR---ITS--GP-ALEKPGDLAA 95 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHH--HhCCCeE---EEe--cc-cccChHHHHH
Confidence 46799999999999888764 233466788999999999999999999 4443321 222 11 1111222333
Q ss_pred HHHHhCCCCC--cccccccCHHHHHHHHHHhcCCCeEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEechHHHHh---
Q 003387 232 VIKFLMPSSR--LSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWSIDMWDVIQEILPDNQNGSRVLITLTDIRIII--- 306 (824)
Q Consensus 232 i~~~l~~~~~--~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~--- 306 (824)
++..+....- .++.+..+ ....+.+...+.+.+..+|+|+..+...+. ..++ +.+-|..|||...+..
T Consensus 96 ~l~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~---~~l~---~~~li~at~~~~~l~~~L~ 168 (328)
T PRK00080 96 ILTNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIR---LDLP---PFTLIGATTRAGLLTSPLR 168 (328)
T ss_pred HHHhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCcccccee---ecCC---CceEEeecCCcccCCHHHH
Confidence 3443322110 00011111 112334555566666667777655443221 1111 2455666766433222
Q ss_pred -hccccc--C---------------CcCc-CccccchhhHHHhcCCCchhHHHHHhHHHhhhhh--h-hccCCC--cccc
Q 003387 307 -SFQFED--G---------------ENMR-LDLVPTGGPLRATYKGRPFLILYHGSISLEENIR--E-AVETPL--GLRY 362 (824)
Q Consensus 307 -~f~~~~--~---------------~~~~-~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~--~-~~~~~~--~~~~ 362 (824)
-|+... . .... .--.+....|++.|+|.|-.+..+...+..-... . .+.... ....
T Consensus 169 sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~ 248 (328)
T PRK00080 169 DRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVRDFAQVKGDGVITKEIADKALD 248 (328)
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 121110 0 0001 1112456789999999996544444433100000 0 010000 1111
Q ss_pred cccc---cCCCCchHHHh-HhccCCCCceechhHHHHHHHHcCCCCCChHHHHHHHHH-HHHhcccccee
Q 003387 363 IKCL---MLPFCLKPCFI-YLSVFPAHQEISTRQLYQLWIAEGFIPDNSEATAESYLE-QLIKEGFVEAK 427 (824)
Q Consensus 363 ~l~~---~L~~~lk~cfl-~~s~fp~~~~i~~~~Li~~W~a~g~i~~~~e~~~~~~~~-~Lv~rsllq~~ 427 (824)
.+.. .|++..+.-+. ....|+.+ .+..+.+.... | ...+.+++.++ .|++.+|++..
T Consensus 249 ~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g----~~~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 249 MLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---G----EERDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred HhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---C----CCcchHHHHhhHHHHHcCCcccC
Confidence 2222 56655555553 55566655 35555543221 1 22334666677 89999999744
No 63
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.09 E-value=5.8e-06 Score=88.03 Aligned_cols=95 Identities=12% Similarity=0.009 Sum_probs=63.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCC--CCHHHHHHHHHHHhCCCC-CcccccccCH-HHHH
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNE--YDADQILDIVIKFLMPSS-RLSEIMDKNY-EMKK 254 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~--~~~~~~~~~i~~~l~~~~-~~~~~~~~~~-~~~~ 254 (824)
-..++|+|.+|.|||||++.+++.... ++|+..+||. +++. .++.++++.|...+-... +.+....... ....
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~Vl--LIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVL--LIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEE--EcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 457899999999999999999995332 3799999999 8866 799999999854432211 1010011111 1122
Q ss_pred HHHHHh-cCCCeEEEEEecCCCh
Q 003387 255 IILHEY-LMTKRYLIVIDDVWSI 276 (824)
Q Consensus 255 ~~l~~~-L~~kr~LlVlDdv~~~ 276 (824)
+....+ -++++++|++|++..-
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhHH
Confidence 222222 2589999999999654
No 64
>PTZ00202 tuzin; Provisional
Probab=98.03 E-value=5.6e-05 Score=80.49 Aligned_cols=80 Identities=15% Similarity=0.126 Sum_probs=61.5
Q ss_pred CCCCCCCCceechhhHHHHHHHHHcCC-CCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHH
Q 003387 150 SSSSKSRDTVGLDDRMEELLDLLIEGP-PQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQI 228 (824)
Q Consensus 150 ~~~~~~~~~vGr~~~~~~l~~~L~~~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~ 228 (824)
..+.+...++||+.+...+...|...+ ...+++.|.|++|+|||||++.+... .. + ...+++ +. +..++
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~--l~--~-~qL~vN---pr--g~eEl 325 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRK--EG--M-PAVFVD---VR--GTEDT 325 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhc--CC--c-eEEEEC---CC--CHHHH
Confidence 344567899999999999999997543 34569999999999999999999973 32 1 133333 22 67999
Q ss_pred HHHHHHHhCCC
Q 003387 229 LDIVIKFLMPS 239 (824)
Q Consensus 229 ~~~i~~~l~~~ 239 (824)
+..|+.+|+..
T Consensus 326 Lr~LL~ALGV~ 336 (550)
T PTZ00202 326 LRSVVKALGVP 336 (550)
T ss_pred HHHHHHHcCCC
Confidence 99999999973
No 65
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.02 E-value=6.4e-07 Score=99.83 Aligned_cols=220 Identities=20% Similarity=0.172 Sum_probs=110.7
Q ss_pred hhcccCcccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCce
Q 003387 516 FCGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRH 595 (824)
Q Consensus 516 ~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~ 595 (824)
.+..++.|..|++.+|.|..+...+..+++|++|++++|.|..+.. + ..+..|+.|++++|.+..++. +..+++|+.
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l-~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~ 166 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG-L-STLTLLKELNLSGNLISDISG-LESLKSLKL 166 (414)
T ss_pred ccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc-h-hhccchhhheeccCcchhccC-Cccchhhhc
Confidence 3556667777777777776665556667777777777777776654 2 566667777777776666554 445677777
Q ss_pred ecCCCccCCCCCCCC--CCCCCCCCeeeccCCCcchhhhcCCCCccceEEEecccccchhhHHHHhccCC--CCCeEEEe
Q 003387 596 LNFGSITLPAHPGKF--CGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLS--CLESLKLA 671 (824)
Q Consensus 596 L~L~~~~~~~~~~p~--i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~--~L~~L~l~ 671 (824)
+++++|.+. .++. ...+.+|+.+.+..+.....+.+..+..+..+++..+.-.....+ ..+. +|+.+++.
T Consensus 167 l~l~~n~i~--~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l----~~~~~~~L~~l~l~ 240 (414)
T KOG0531|consen 167 LDLSYNRIV--DIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGL----NELVMLHLRELYLS 240 (414)
T ss_pred ccCCcchhh--hhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCc----ccchhHHHHHHhcc
Confidence 777776665 3333 355566666655532222111133333333333333221111111 1111 25566665
Q ss_pred ccCCCCCccEEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCC-eee-e-cCCCCCCccEEeec
Q 003387 672 NESKMPRLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGR-KLT-C-GSYGFPNLKVLHLK 748 (824)
Q Consensus 672 ~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~-~~~-~-~~~~~~~L~~L~L~ 748 (824)
.|. +.... .+...+.++..|++.++.+.. ...+...+.+..+....+.+... ... . .....+.+....+.
T Consensus 241 ~n~----i~~~~-~~~~~~~~l~~l~~~~n~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (414)
T KOG0531|consen 241 GNR----ISRSP-EGLENLKNLPVLDLSSNRISN--LEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLE 313 (414)
T ss_pred cCc----ccccc-ccccccccccccchhhccccc--cccccccchHHHhccCcchhcchhhhhccccccccccccccccc
Confidence 541 11110 233455666667776665432 22233444445555544443311 111 1 13345566666665
Q ss_pred cCC
Q 003387 749 SML 751 (824)
Q Consensus 749 ~~~ 751 (824)
.++
T Consensus 314 ~~~ 316 (414)
T KOG0531|consen 314 LNP 316 (414)
T ss_pred cCc
Confidence 544
No 66
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.01 E-value=4.5e-05 Score=87.51 Aligned_cols=117 Identities=13% Similarity=0.012 Sum_probs=79.9
Q ss_pred CCCceechhhHHHHHHHHHc---CCCCeEEEEEEcCCCChHHHHHHHHhCCcc--c-cCCCc--eeEEEECCCCCCCCHH
Q 003387 155 SRDTVGLDDRMEELLDLLIE---GPPQLSVVAILDSIGLDKTAFAGEAYNSSY--V-KHYFD--CHAWITEPYSNEYDAD 226 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~--~-~~~F~--~~~wv~~~vs~~~~~~ 226 (824)
++.+.|||+++++|...|.. +.....++-|+|++|.|||+.++.|.+.-+ . +.... .+++|. ...-.+..
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN--Cm~Lstp~ 831 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN--GMNVVHPN 831 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe--CCccCCHH
Confidence 35689999999999998875 233346788999999999999999987311 0 11222 245555 66666788
Q ss_pred HHHHHHHHHhCCCCCcccccccCHHHHHHHHHHhcCC---CeEEEEEecCCCh
Q 003387 227 QILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMT---KRYLIVIDDVWSI 276 (824)
Q Consensus 227 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~---kr~LlVlDdv~~~ 276 (824)
.+...|+.++....+ ............+...+.. ...+||||+|+..
T Consensus 832 sIYqvI~qqL~g~~P---~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L 881 (1164)
T PTZ00112 832 AAYQVLYKQLFNKKP---PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYL 881 (1164)
T ss_pred HHHHHHHHHHcCCCC---CccccHHHHHHHHHhhhhcccccceEEEeehHhhh
Confidence 899999999965432 1233344555666665522 3458999999754
No 67
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.96 E-value=2e-05 Score=84.18 Aligned_cols=249 Identities=15% Similarity=0.087 Sum_probs=125.7
Q ss_pred CCceechhhHHHHHHHHHcC---CCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHH
Q 003387 156 RDTVGLDDRMEELLDLLIEG---PPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIV 232 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i 232 (824)
.+++|++..++++..++... ......+.++|++|+|||+||+.+.+ +....| ..+. .+....... +...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~--~~~~~~---~~~~--~~~~~~~~~-l~~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIAN--EMGVNL---KITS--GPALEKPGD-LAAI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCCE---EEec--cchhcCchh-HHHH
Confidence 46899999999999888642 23356688999999999999999998 444332 1222 111111222 2223
Q ss_pred HHHhCCCCC--cccccccCHHHHHHHHHHhcCCCeEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEechHHHHhh---
Q 003387 233 IKFLMPSSR--LSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWSIDMWDVIQEILPDNQNGSRVLITLTDIRIIIS--- 307 (824)
Q Consensus 233 ~~~l~~~~~--~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~--- 307 (824)
+..+....- .++.+..+ ....+.+...+.+.+..+|+|+......|.. +++ +.+-|..||+...+..+
T Consensus 76 l~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~~---~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 76 LTNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DLP---PFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HHhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee---cCC---CeEEEEecCCccccCHHHHh
Confidence 333332110 00011111 1234556777777777788888766654431 122 24556666765332221
Q ss_pred -ccccc--C---------------CcCcCcc-ccchhhHHHhcCCCchhHHHHHhHHHhhh--hh-hhccCCC--ccccc
Q 003387 308 -FQFED--G---------------ENMRLDL-VPTGGPLRATYKGRPFLILYHGSISLEEN--IR-EAVETPL--GLRYI 363 (824)
Q Consensus 308 -f~~~~--~---------------~~~~~~~-~~~~~~i~~~c~GlPlai~~~~~~l~~~~--~~-~~~~~~~--~~~~~ 363 (824)
|.... . ......+ .+....|++.|+|.|-.+..+...+..-. .. ....... .....
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKALEM 228 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 11100 0 0001111 24567899999999976655554431000 00 0010000 11111
Q ss_pred ccc---cCCCCchHHHh-HhccCCCCceechhHHHHHHHHcCCCCCChHHHHHHHHH-HHHhcccccee
Q 003387 364 KCL---MLPFCLKPCFI-YLSVFPAHQEISTRQLYQLWIAEGFIPDNSEATAESYLE-QLIKEGFVEAK 427 (824)
Q Consensus 364 l~~---~L~~~lk~cfl-~~s~fp~~~~i~~~~Li~~W~a~g~i~~~~e~~~~~~~~-~Lv~rsllq~~ 427 (824)
+.. .++++.+.-+. ..+.++.+ .+..+++.... | .....++..++ .|++++|++..
T Consensus 229 l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g----~~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 229 LMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G----EDADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred hCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C----CCcchHHHhhhHHHHHcCCcccC
Confidence 222 55655554444 44555433 34443322211 1 22344677778 69999999743
No 68
>PLN03150 hypothetical protein; Provisional
Probab=97.96 E-value=9e-06 Score=94.96 Aligned_cols=91 Identities=18% Similarity=0.191 Sum_probs=47.7
Q ss_pred CcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCccceeccCc-ccCc
Q 003387 688 LFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAA-MPKL 766 (824)
Q Consensus 688 ~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~-lp~L 766 (824)
..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+. ++..++.+++|+.|+|++|.....+|..++. +.++
T Consensus 439 ~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~ 517 (623)
T PLN03150 439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHR 517 (623)
T ss_pred hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEECcCCcccccCChHHhhccccC
Confidence 3445556666666555555555555566666666665555542 3334455556666666555543444444333 2344
Q ss_pred cEEEEecCCCCCC
Q 003387 767 ECLIINPCAYLKK 779 (824)
Q Consensus 767 ~~L~l~~c~~l~~ 779 (824)
..+.+.+|+.+..
T Consensus 518 ~~l~~~~N~~lc~ 530 (623)
T PLN03150 518 ASFNFTDNAGLCG 530 (623)
T ss_pred ceEEecCCccccC
Confidence 5555555554443
No 69
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.93 E-value=1e-05 Score=57.83 Aligned_cols=39 Identities=36% Similarity=0.423 Sum_probs=21.7
Q ss_pred cceEEeecCCCCCccChhhhhcCCCccEeecCCccccccc
Q 003387 545 LLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTA 584 (824)
Q Consensus 545 ~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp 584 (824)
+|++|++++|+|+.+|+.+ ++|++|++|++++|.++.+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l-~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPEL-SNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHG-TTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchH-hCCCCCCEEEecCCCCCCCc
Confidence 4556666666666665555 56666666666666555543
No 70
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.92 E-value=6.1e-06 Score=96.04 Aligned_cols=108 Identities=21% Similarity=0.176 Sum_probs=53.3
Q ss_pred CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCc--cCCccCCCCCcceEEeecCCCCCccChhhhhcCCC
Q 003387 492 DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLI--QYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLN 569 (824)
Q Consensus 492 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~--~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~ 569 (824)
..+|+.|.+.+.... ...++...-..+|.||.|.++|-.+. .+..-..++++|+.||+|+|+++.+ ..+ ++|+|
T Consensus 121 r~nL~~LdI~G~~~~--s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GI-S~Lkn 196 (699)
T KOG3665|consen 121 RQNLQHLDISGSELF--SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGI-SRLKN 196 (699)
T ss_pred HHhhhhcCccccchh--hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHH-hcccc
Confidence 334444444443222 23344455555555555555555432 2222234455566666666655555 444 56666
Q ss_pred ccEeecCCccccccc--hhhhccccCceecCCCccC
Q 003387 570 LYTLDMPFSYIDHTA--DEFWKMNKLRHLNFGSITL 603 (824)
Q Consensus 570 L~~L~L~~~~l~~lp--~~i~~L~~L~~L~L~~~~~ 603 (824)
||+|.+++-.+..-. ..+.+|++|++||+|....
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 666665544333221 2355566666666555433
No 71
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.89 E-value=1.1e-05 Score=57.73 Aligned_cols=41 Identities=27% Similarity=0.353 Sum_probs=36.0
Q ss_pred CcccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccCh
Q 003387 521 KLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPS 561 (824)
Q Consensus 521 ~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~ 561 (824)
++|++|++++|.|+.+|..+++|++|++|++++|.++.++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 47999999999999999989999999999999999997764
No 72
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=0.0002 Score=76.67 Aligned_cols=125 Identities=13% Similarity=0.226 Sum_probs=82.1
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCC----ccccCCCceeEEEECCC-CCCCCHHHHHH
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNS----SYVKHYFDCHAWITEPY-SNEYDADQILD 230 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~----~~~~~~F~~~~wv~~~v-s~~~~~~~~~~ 230 (824)
.+++|-+..++.+.+.+..+. -....-++|+.|+||||+|+.+++. .....|+|...|.. . +....+.+ .+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~--~~~~~i~v~~-ir 79 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP--INKKSIGVDD-IR 79 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc--ccCCCCCHHH-HH
Confidence 468899999999999987654 3457789999999999999888762 12245667666654 2 22233333 22
Q ss_pred HHHHHhCCCCCcccccccCHHHHHHHHHHhcCCCeEEEEEe-cCCChhhHHHHHhhCCCCCCCcEEEEEechHH
Q 003387 231 IVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVID-DVWSIDMWDVIQEILPDNQNGSRVLITLTDIR 303 (824)
Q Consensus 231 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlD-dv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~ 303 (824)
++.+.+.... ...++|++||=| |.++...++.+...+.....++.+|++|.+.+
T Consensus 80 ~~~~~~~~~p-------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~ 134 (313)
T PRK05564 80 NIIEEVNKKP-------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLE 134 (313)
T ss_pred HHHHHHhcCc-------------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 3333332211 112455555555 55566789999998888778899999887664
No 73
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.87 E-value=3.9e-05 Score=82.28 Aligned_cols=134 Identities=17% Similarity=0.156 Sum_probs=81.9
Q ss_pred hcccCcccEEEeeCccCccCCccCCCCCcceEEeecCC-CCCccChhhhhcCCCccEeecCCc-cccccchhhhccccCc
Q 003387 517 CGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIP-SLNSLPSSLLSNLLNLYTLDMPFS-YIDHTADEFWKMNKLR 594 (824)
Q Consensus 517 ~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~-~i~~lp~~i~~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~ 594 (824)
+..++.++.|++++|.++.+|. + -.+|+.|.+++| .++.+|..+ ..+|+.|++++| .+..+|.. |+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s------Le 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPES------VR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccccc------cc
Confidence 4557889999999999988883 2 236999999884 477888765 368999999999 88888864 56
Q ss_pred eecCCCccCCCCCCCCCCCCC-CCCeeeccCCCcchhhhcC-CC-CccceEEEecccccchhhHHHHhccCCCCCeEEEe
Q 003387 595 HLNFGSITLPAHPGKFCGSLE-NLNFISALHPCCCTEDILG-RL-PNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLA 671 (824)
Q Consensus 595 ~L~L~~~~~~~~~~p~i~~L~-~L~~l~~~~~~~~~~~~l~-~l-~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~ 671 (824)
.|+++.+... .++.|+ +|+.|.+..........+. .+ ++|+.|.+++|.. ..+|..+. .+|+.|.++
T Consensus 116 ~L~L~~n~~~-----~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~---i~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 116 SLEIKGSATD-----SIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSN---IILPEKLP--ESLQSITLH 185 (426)
T ss_pred eEEeCCCCCc-----ccccCcchHhheeccccccccccccccccCCcccEEEecCCCc---ccCccccc--ccCcEEEec
Confidence 6666544332 223332 2555554311100000011 12 4788888887741 12232222 467777776
Q ss_pred c
Q 003387 672 N 672 (824)
Q Consensus 672 ~ 672 (824)
.
T Consensus 186 ~ 186 (426)
T PRK15386 186 I 186 (426)
T ss_pred c
Confidence 4
No 74
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=8.6e-05 Score=80.10 Aligned_cols=113 Identities=15% Similarity=0.135 Sum_probs=86.5
Q ss_pred CCceechhhHHHHHHHHHcC--CCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCce--eEEEECCCCCCCCHHHHHHH
Q 003387 156 RDTVGLDDRMEELLDLLIEG--PPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDC--HAWITEPYSNEYDADQILDI 231 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~--~~wv~~~vs~~~~~~~~~~~ 231 (824)
+.+.+|+++++++...|..- .....-+.|+|..|.|||+.++.|.+ ++...... ++.|. +-......+++..
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yIN--c~~~~t~~~i~~~ 92 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYIN--CLELRTPYQVLSK 92 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEe--eeeCCCHHHHHHH
Confidence 34889999999999988752 22233389999999999999999999 55554322 56776 7788899999999
Q ss_pred HHHHhCCCCCcccccccCHHHHHHHHHHhcC--CCeEEEEEecCCCh
Q 003387 232 VIKFLMPSSRLSEIMDKNYEMKKIILHEYLM--TKRYLIVIDDVWSI 276 (824)
Q Consensus 232 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~ 276 (824)
|+++++... .......+....+.+.+. ++.+++|||++...
T Consensus 93 i~~~~~~~p----~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L 135 (366)
T COG1474 93 ILNKLGKVP----LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDAL 135 (366)
T ss_pred HHHHcCCCC----CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhh
Confidence 999997322 234556677777877774 58999999999754
No 75
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.84 E-value=8.5e-06 Score=94.82 Aligned_cols=109 Identities=24% Similarity=0.288 Sum_probs=87.7
Q ss_pred CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccC--hhhhhcCCC
Q 003387 492 DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLP--SSLLSNLLN 569 (824)
Q Consensus 492 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp--~~i~~~L~~ 569 (824)
+|.||+|.+.+.... ...+...+.+|++|+.||+|+++++.+ ..+++|++|+.|.+++-.+..-. ..+ .+|++
T Consensus 147 LPsL~sL~i~~~~~~---~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~L-F~L~~ 221 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFD---NDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDL-FNLKK 221 (699)
T ss_pred CcccceEEecCceec---chhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHH-hcccC
Confidence 999999999987764 334678889999999999999999988 77999999999999987776433 345 78999
Q ss_pred ccEeecCCccccccch-------hhhccccCceecCCCccCCC
Q 003387 570 LYTLDMPFSYIDHTAD-------EFWKMNKLRHLNFGSITLPA 605 (824)
Q Consensus 570 L~~L~L~~~~l~~lp~-------~i~~L~~L~~L~L~~~~~~~ 605 (824)
|++||+|......-+. .-..||+||.||.+++.+..
T Consensus 222 L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 222 LRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred CCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 9999999874333322 12348999999999887754
No 76
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.82 E-value=0.00011 Score=76.20 Aligned_cols=118 Identities=11% Similarity=0.153 Sum_probs=84.4
Q ss_pred CCCceechhhHHHHHHHHHcCCC-CeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHH
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPP-QLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVI 233 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~-~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~ 233 (824)
++.+.+|+..+..+..++...+. -...|-|+|-.|.|||.+++.+++.. .. ..+|++ +-..|..+-++..|+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~---~~vw~n--~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--NL---ENVWLN--CVECFTYAILLEKIL 77 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc--CC---cceeee--hHHhccHHHHHHHHH
Confidence 46777999999999999987764 35666899999999999999999943 22 358999 999999999999999
Q ss_pred HHhCCCCCcccccccCHHHHHHHHHHhcC-------CCeEEEEEecCCChhhH
Q 003387 234 KFLMPSSRLSEIMDKNYEMKKIILHEYLM-------TKRYLIVIDDVWSIDMW 279 (824)
Q Consensus 234 ~~l~~~~~~~~~~~~~~~~~~~~l~~~L~-------~kr~LlVlDdv~~~~~~ 279 (824)
.+.+..+..+.....+.+.....+..+-+ ++.++||||++....+.
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~ 130 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDM 130 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhcc
Confidence 99963222111111122333333332222 46899999999876443
No 77
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.80 E-value=4.7e-05 Score=84.59 Aligned_cols=44 Identities=23% Similarity=0.298 Sum_probs=34.7
Q ss_pred CCceechhhHHH---HHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEE---LLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
+++||.+..+.. +.+++..+. ...+.++|++|+||||+|+.+.+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~--~~~ilL~GppGtGKTtLA~~ia~ 58 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGR--LSSMILWGPPGTGKTTLARIIAG 58 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 467787776555 666665544 55788899999999999999998
No 78
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.74 E-value=1.3e-06 Score=96.59 Aligned_cols=94 Identities=16% Similarity=0.190 Sum_probs=45.5
Q ss_pred EEeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCceecCCCccCCCCCCC--CCCCCCCCCeeeccCC
Q 003387 548 YLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGK--FCGSLENLNFISALHP 625 (824)
Q Consensus 548 ~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~~~p--~i~~L~~L~~l~~~~~ 625 (824)
..+.++|.+..+..++ .-++.|+.|||++|++...- .+..|++|+||||++|.+. .+| +...+. |..|.+.++
T Consensus 168 ~a~fsyN~L~~mD~SL-qll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~--~vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 168 TASFSYNRLVLMDESL-QLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLR--HVPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred hhhcchhhHHhHHHHH-HHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhc--cccccchhhhh-heeeeeccc
Confidence 3334444444444554 55555666666666555544 4555666666666665554 333 111112 444444422
Q ss_pred C-cchhhhcCCCCccceEEEecc
Q 003387 626 C-CCTEDILGRLPNLRNLRIRGD 647 (824)
Q Consensus 626 ~-~~~~~~l~~l~~L~~L~l~~~ 647 (824)
. ..+.. +.+|++|+.|+++.|
T Consensus 243 ~l~tL~g-ie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 243 ALTTLRG-IENLKSLYGLDLSYN 264 (1096)
T ss_pred HHHhhhh-HHhhhhhhccchhHh
Confidence 1 22333 455555555555554
No 79
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.70 E-value=0.00055 Score=79.50 Aligned_cols=142 Identities=15% Similarity=0.138 Sum_probs=87.8
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCC---ceeEEEECCCCC---CCCHHHHH
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYF---DCHAWITEPYSN---EYDADQIL 229 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F---~~~~wv~~~vs~---~~~~~~~~ 229 (824)
++++|.+..+..+.+.+.... ...+.|+|++|+||||+|+.+++.......+ ...-|+. +.. ..+...+.
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~--~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~--i~~~~l~~d~~~i~ 229 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPF--PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE--VDGTTLRWDPREVT 229 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCC--CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE--EechhccCCHHHHh
Confidence 578999999999888875443 5679999999999999999998854333332 1234554 321 12333322
Q ss_pred HHH---------------HHHhCCCC-----------C---cccccccCHHHHHHHHHHhcCCCeEEEEEecCCCh--hh
Q 003387 230 DIV---------------IKFLMPSS-----------R---LSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWSI--DM 278 (824)
Q Consensus 230 ~~i---------------~~~l~~~~-----------~---~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~ 278 (824)
..+ +...+... + ..+....+ ...+..+.+.+++++++++-|+.|.. ..
T Consensus 230 ~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~ 308 (615)
T TIGR02903 230 NPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEFSSSYYDPDDPNV 308 (615)
T ss_pred HHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEeecceeccCCccc
Confidence 211 11111100 0 00111122 33578899999999999998877765 46
Q ss_pred HHHHHhhCCCCCCCcEEEE--EechH
Q 003387 279 WDVIQEILPDNQNGSRVLI--TLTDI 302 (824)
Q Consensus 279 ~~~l~~~~~~~~~gs~ilv--TtR~~ 302 (824)
|+.+...+....+...|++ ||++.
T Consensus 309 ~~~ik~~~~~~~~~~~VLI~aTt~~~ 334 (615)
T TIGR02903 309 PKYIKKLFEEGAPADFVLIGATTRDP 334 (615)
T ss_pred chhhhhhcccCccceEEEEEeccccc
Confidence 8888777776666666666 56644
No 80
>PRK06893 DNA replication initiation factor; Validated
Probab=97.67 E-value=9.5e-05 Score=75.06 Aligned_cols=36 Identities=11% Similarity=-0.025 Sum_probs=28.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEE
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIT 216 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~ 216 (824)
...+.++|..|+|||+||+++++ +.......+.|++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~y~~ 74 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSN--HYLLNQRTAIYIP 74 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEee
Confidence 35789999999999999999999 4444444567777
No 81
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.66 E-value=4.6e-06 Score=73.57 Aligned_cols=84 Identities=24% Similarity=0.268 Sum_probs=58.6
Q ss_pred CcccEEEeeCccCccCC---ccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCceec
Q 003387 521 KLLRVLDLGSLVLIQYP---SGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLN 597 (824)
Q Consensus 521 ~~Lr~L~L~~~~i~~lp---~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 597 (824)
+.+-.++|++|.+..++ ..+....+|...+|++|.++.+|+.+-.+.+.+.+|++++|.+..+|.++..++.|+.|+
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 34556777777655333 344556677777777777777777764455577777777777777777777777778777
Q ss_pred CCCccCC
Q 003387 598 FGSITLP 604 (824)
Q Consensus 598 L~~~~~~ 604 (824)
++.|.+.
T Consensus 107 l~~N~l~ 113 (177)
T KOG4579|consen 107 LRFNPLN 113 (177)
T ss_pred cccCccc
Confidence 7777765
No 82
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.66 E-value=9.2e-05 Score=75.31 Aligned_cols=52 Identities=10% Similarity=0.043 Sum_probs=37.0
Q ss_pred chhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEE
Q 003387 161 LDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIT 216 (824)
Q Consensus 161 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~ 216 (824)
.+..++.+.+++... ....+.|+|..|+||||||+.+++ +........++++
T Consensus 22 ~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKT~la~~~~~--~~~~~~~~~~~i~ 73 (226)
T TIGR03420 22 NAELLAALRQLAAGK--GDRFLYLWGESGSGKSHLLQAACA--AAEERGKSAIYLP 73 (226)
T ss_pred cHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHH--HHHhcCCcEEEEe
Confidence 455667777775533 367889999999999999999998 3333344455665
No 83
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.65 E-value=0.0002 Score=77.77 Aligned_cols=44 Identities=23% Similarity=0.208 Sum_probs=37.8
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
++++|++..++.+.+++..+. ...+-++|+.|+||||+|+.+.+
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~GtGKT~la~~~~~ 58 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPN--LPHLLVQGPPGSGKTAAVRALAR 58 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 568899999999999887654 44678999999999999999887
No 84
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.61 E-value=1.3e-06 Score=96.63 Aligned_cols=121 Identities=20% Similarity=0.189 Sum_probs=71.5
Q ss_pred cccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchh-hhccccCceecCCC
Q 003387 522 LLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADE-FWKMNKLRHLNFGS 600 (824)
Q Consensus 522 ~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~ 600 (824)
.|.+.++++|.+..+-.++.-+++|+.|+|++|++.+.. .+ ..|++|++|||++|.+..+|.- ...+. |+.|++++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~L-r~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NL-RRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HH-Hhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 355556666666555555666666666666666666554 33 6666666666666666666542 22233 66666666
Q ss_pred ccCCCCCCCCCCCCCCCCeeeccC----CCcchhhhcCCCCccceEEEeccc
Q 003387 601 ITLPAHPGKFCGSLENLNFISALH----PCCCTEDILGRLPNLRNLRIRGDL 648 (824)
Q Consensus 601 ~~~~~~~~p~i~~L~~L~~l~~~~----~~~~~~~~l~~l~~L~~L~l~~~~ 648 (824)
|.+. .+-++.+|.+|+.|+++. ....+.. +..|..|+.|++.+|.
T Consensus 242 N~l~--tL~gie~LksL~~LDlsyNll~~hseL~p-LwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 242 NALT--TLRGIENLKSLYGLDLSYNLLSEHSELEP-LWSLSSLIVLWLEGNP 290 (1096)
T ss_pred cHHH--hhhhHHhhhhhhccchhHhhhhcchhhhH-HHHHHHHHHHhhcCCc
Confidence 6554 344666666666666652 1222333 5566677777777764
No 85
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.60 E-value=0.00027 Score=76.89 Aligned_cols=108 Identities=13% Similarity=0.090 Sum_probs=72.4
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHH
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKF 235 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~ 235 (824)
.++++.+...+.++..|..+ +.|.++|++|+||||+|+.+++.......|+.+.||+ +++.++..+......-.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt--FHpsySYeDFI~G~rP~ 248 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ--FHQSYSYEDFIQGYRPN 248 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe--ecccccHHHHhcccCCC
Confidence 46888999999999998864 3678899999999999999988543345778889999 99988877765432110
Q ss_pred hCCCCCcccccccCHHHHHHHHHHhc--CCCeEEEEEecCCCh
Q 003387 236 LMPSSRLSEIMDKNYEMKKIILHEYL--MTKRYLIVIDDVWSI 276 (824)
Q Consensus 236 l~~~~~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~ 276 (824)
..+ .... ..-....+.+.- .+++++||+|++...
T Consensus 249 ---~vg---y~~~-~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 249 ---GVG---FRRK-DGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred ---CCC---eEec-CchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 000 0000 011112222222 247899999999765
No 86
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.58 E-value=1.8e-05 Score=90.60 Aligned_cols=245 Identities=22% Similarity=0.129 Sum_probs=135.0
Q ss_pred hhHhhhcccCcccEEEeeCcc-Ccc--CCccCCCCCcceEEeecCC-C-CCccC---hhhhhcCCCccEeecCCcc-ccc
Q 003387 512 DWEKFCGMFKLLRVLDLGSLV-LIQ--YPSGIENLFLLRYLKLNIP-S-LNSLP---SSLLSNLLNLYTLDMPFSY-IDH 582 (824)
Q Consensus 512 ~~~~~~~~~~~Lr~L~L~~~~-i~~--lp~~i~~l~~Lr~L~L~~~-~-i~~lp---~~i~~~L~~L~~L~L~~~~-l~~ 582 (824)
........+++|+.|.+.++. +.. +-.....+++|+.|+++++ . +...+ ..+...+.+|+.|++++|. ++.
T Consensus 179 ~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd 258 (482)
T KOG1947|consen 179 ILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTD 258 (482)
T ss_pred HHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCc
Confidence 344455557778888887775 443 3334456777788877762 1 11111 1122556777777777774 443
Q ss_pred cc-hhhh-ccccCceecCCCcc-CCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEecccccchhhHHHHh
Q 003387 583 TA-DEFW-KMNKLRHLNFGSIT-LPAHPGKFCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSL 659 (824)
Q Consensus 583 lp-~~i~-~L~~L~~L~L~~~~-~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l 659 (824)
.- ..+. .+++|++|.+.+|. ++ ...+..+...+++|++|+++++.......+....
T Consensus 259 ~~l~~l~~~c~~L~~L~l~~c~~lt---------------------~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~ 317 (482)
T KOG1947|consen 259 IGLSALASRCPNLETLSLSNCSNLT---------------------DEGLVSIAERCPSLRELDLSGCHGLTDSGLEALL 317 (482)
T ss_pred hhHHHHHhhCCCcceEccCCCCccc---------------------hhHHHHHHHhcCcccEEeeecCccchHHHHHHHH
Confidence 21 1122 36677777655554 22 3344444677888999999888755455555555
Q ss_pred ccCCCCCeEEEeccCCCCCccEEEeCccCcCCCceEEEEEcccCCC---CCcccccCCCCCCeEEeeccccCCCeeeecC
Q 003387 660 CRLSCLESLKLANESKMPRLSKIVLAEYLFPHSLTHLSFSNTDLMD---DPMPTLEKLPLLQVLKLKQNSYSGRKLTCGS 736 (824)
Q Consensus 660 ~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~---~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~ 736 (824)
.++++|+.|.+.. +..++.++.+.+..+.... .....+..+++|+.+.+..+.......
T Consensus 318 ~~c~~l~~l~~~~--------------~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 379 (482)
T KOG1947|consen 318 KNCPNLRELKLLS--------------LNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGL---- 379 (482)
T ss_pred HhCcchhhhhhhh--------------cCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcch----
Confidence 6666666655442 2224556666665553211 122345678888888888766333221
Q ss_pred CCCCCccEEeeccCCCC-ccceeccCcccCccEEEEecCCCCCCCcc-cccc-CccCcEEEecCCcHHH
Q 003387 737 YGFPNLKVLHLKSMLWL-EEWTMGNAAMPKLECLIINPCAYLKKMPE-QLWY-IKSLNKFDCWWPQPEL 802 (824)
Q Consensus 737 ~~~~~L~~L~L~~~~~l-~~l~~~~~~lp~L~~L~l~~c~~l~~lp~-~l~~-l~~L~~L~l~~c~~~l 802 (824)
.+.+.+|+.+ ..+.......++|+.|.+..|...+.--. .... +.++..+.+.+|+...
T Consensus 380 -------~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 380 -------ELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred -------HHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence 2333444444 22222223334488888888876542111 1111 6677888888887333
No 87
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.55 E-value=0.00011 Score=80.42 Aligned_cols=55 Identities=18% Similarity=0.172 Sum_probs=42.2
Q ss_pred CCCCCceechhhHHHHHHHHHcC-----------CCCeEEEEEEcCCCChHHHHHHHHhCCccccCCC
Q 003387 153 SKSRDTVGLDDRMEELLDLLIEG-----------PPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYF 209 (824)
Q Consensus 153 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F 209 (824)
+...++.|+++.+++|.+.+... -...+-+.++|++|+|||++|+++++ +....|
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~ 184 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF 184 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE
Confidence 34567899999999999887532 12245688999999999999999999 444443
No 88
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.52 E-value=0.00027 Score=74.17 Aligned_cols=111 Identities=20% Similarity=0.271 Sum_probs=65.0
Q ss_pred CCCCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHH
Q 003387 153 SKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIV 232 (824)
Q Consensus 153 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i 232 (824)
+...+++|-+..+.+++ ..+. +.-.-.||++|+||||||+.+.. .....|... |-..+-.+=++++
T Consensus 27 vGQ~HLlg~~~~lrr~v---~~~~--l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~~~-------sAv~~gvkdlr~i 92 (436)
T COG2256 27 VGQEHLLGEGKPLRRAV---EAGH--LHSMILWGPPGTGKTTLARLIAG--TTNAAFEAL-------SAVTSGVKDLREI 92 (436)
T ss_pred cChHhhhCCCchHHHHH---hcCC--CceeEEECCCCCCHHHHHHHHHH--hhCCceEEe-------ccccccHHHHHHH
Confidence 34455666655555444 3333 66667899999999999999999 566666432 2222222222222
Q ss_pred HHHhCCCCCcccccccCHHHHHHHHHHhcCCCeEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEec
Q 003387 233 IKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWSI--DMWDVIQEILPDNQNGSRVLITLT 300 (824)
Q Consensus 233 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR 300 (824)
++... .....++|.+|++|.|..- .+-+.+ +|.-.+|.-|+|-+.
T Consensus 93 ~e~a~--------------------~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGAT 139 (436)
T COG2256 93 IEEAR--------------------KNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGAT 139 (436)
T ss_pred HHHHH--------------------HHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEecc
Confidence 22110 1223489999999999643 344433 344556887877443
No 89
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.49 E-value=0.00062 Score=78.10 Aligned_cols=137 Identities=12% Similarity=0.119 Sum_probs=74.4
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHH
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIK 234 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~ 234 (824)
-++++|.+..++.|.+++..+. -...+-++|..|+||||+|+.+.+.-.....+ -+..+...+.-+.|..
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~---------~~~PCG~C~sCr~I~~ 84 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGV---------TSQPCGVCRACREIDE 84 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCC---------CCCCCcccHHHHHHhc
Confidence 3689999999999999987654 23455699999999999998776621111100 0111111111111111
Q ss_pred HhCCCCCcccc---cccCHHHHHHHHHHh----cCCCeEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEechHH
Q 003387 235 FLMPSSRLSEI---MDKNYEMKKIILHEY----LMTKRYLIVIDDVWSI--DMWDVIQEILPDNQNGSRVLITLTDIR 303 (824)
Q Consensus 235 ~l~~~~~~~~~---~~~~~~~~~~~l~~~----L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR~~~ 303 (824)
.-. .+..++ .....++....+... ..++.-++|+|++... ..|+.+...+.......++|+||++..
T Consensus 85 G~h--~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~ 160 (830)
T PRK07003 85 GRF--VDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160 (830)
T ss_pred CCC--ceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChh
Confidence 000 000000 001122222222211 1245558889999865 357877776665555778888777654
No 90
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.48 E-value=0.00031 Score=82.32 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=36.9
Q ss_pred CCceechhhHH---HHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCC
Q 003387 156 RDTVGLDDRME---ELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYF 209 (824)
Q Consensus 156 ~~~vGr~~~~~---~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F 209 (824)
++++|.+..+. .+.+.+..+. ...+.++|++|+||||+|+.+++ .....|
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~--~~slLL~GPpGtGKTTLA~aIA~--~~~~~f 80 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADR--VGSLILYGPPGVGKTTLARIIAN--HTRAHF 80 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH--HhcCcc
Confidence 46889887764 4555555443 55678999999999999999998 444444
No 91
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.46 E-value=0.00054 Score=63.45 Aligned_cols=89 Identities=11% Similarity=0.013 Sum_probs=49.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHH
Q 003387 180 SVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHE 259 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 259 (824)
..+.|+|.+|+||||+|+.+.+ ........++.+. .+........... ....... ............+.+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~ 72 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAR--ELGPPGGGVIYID--GEDILEEVLDQLL-LIIVGGK-----KASGSGELRLRLALA 72 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHh--ccCCCCCCEEEEC--CEEccccCHHHHH-hhhhhcc-----CCCCCHHHHHHHHHH
Confidence 5789999999999999999999 4443333455555 3333222221111 0111111 111122333344444
Q ss_pred hcCCC-eEEEEEecCCChhh
Q 003387 260 YLMTK-RYLIVIDDVWSIDM 278 (824)
Q Consensus 260 ~L~~k-r~LlVlDdv~~~~~ 278 (824)
..+.. ..+|++|+++....
T Consensus 73 ~~~~~~~~viiiDei~~~~~ 92 (148)
T smart00382 73 LARKLKPDVLILDEITSLLD 92 (148)
T ss_pred HHHhcCCCEEEEECCcccCC
Confidence 45444 49999999987643
No 92
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.45 E-value=0.0012 Score=72.15 Aligned_cols=46 Identities=20% Similarity=0.159 Sum_probs=38.9
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-++++|.+..++.+.+.+..+. -...+-++|+.|+||||+|+.+.+
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~ 60 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAK 60 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHH
Confidence 3578999999999999887653 345678999999999999999887
No 93
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.44 E-value=0.0014 Score=74.33 Aligned_cols=46 Identities=15% Similarity=0.109 Sum_probs=38.4
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-+++||-+..++.|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 15 FddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAk 60 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAK 60 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999997664 235668899999999999988866
No 94
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.43 E-value=0.00066 Score=72.90 Aligned_cols=119 Identities=15% Similarity=0.137 Sum_probs=71.6
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHH
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIK 234 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~ 234 (824)
-++++|.+...+.+..++..+. -..++-++|..|+||||+|+.+++ +.... ...+. .+. .....+...+ .
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~--~~~~~---~~~i~--~~~-~~~~~i~~~l-~ 89 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCN--EVGAE---VLFVN--GSD-CRIDFVRNRL-T 89 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHH--HhCcc---ceEec--cCc-ccHHHHHHHH-H
Confidence 3678999999999999988643 356777899999999999999988 33222 23344 333 2222221111 1
Q ss_pred HhCCCCCcccccccCHHHHHHHHHHhcCCCeEEEEEecCCCh---hhHHHHHhhCCCCCCCcEEEEEechH
Q 003387 235 FLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWSI---DMWDVIQEILPDNQNGSRVLITLTDI 302 (824)
Q Consensus 235 ~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~ilvTtR~~ 302 (824)
...... .+.+.+-+||+||+... ...+.+...+.....++++|+||...
T Consensus 90 ~~~~~~-------------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 90 RFASTV-------------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred HHHHhh-------------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 110000 01134557889999754 22333433344445577888888654
No 95
>PRK04195 replication factor C large subunit; Provisional
Probab=97.40 E-value=0.00065 Score=77.15 Aligned_cols=117 Identities=20% Similarity=0.242 Sum_probs=70.7
Q ss_pred CCceechhhHHHHHHHHHcC--CCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHH
Q 003387 156 RDTVGLDDRMEELLDLLIEG--PPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVI 233 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~ 233 (824)
++++|.+..++++.+|+..- ....+.+-|+|++|+||||+|+.+.+. .. |+ .+-+. .|...+. .....++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e--l~--~~-~ieln--asd~r~~-~~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND--YG--WE-VIELN--ASDQRTA-DVIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--cC--CC-EEEEc--ccccccH-HHHHHHH
Confidence 57999999999999998752 223678999999999999999999993 32 32 22233 4433222 2333333
Q ss_pred HHhCCCCCcccccccCHHHHHHHHHHhcCCCeEEEEEecCCChh------hHHHHHhhCCCCCCCcEEEEEec
Q 003387 234 KFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWSID------MWDVIQEILPDNQNGSRVLITLT 300 (824)
Q Consensus 234 ~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~------~~~~l~~~~~~~~~gs~ilvTtR 300 (824)
........ ....++-+||+|+++... .+..+...+.. .+..||+|+.
T Consensus 86 ~~~~~~~s------------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n 138 (482)
T PRK04195 86 GEAATSGS------------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTAN 138 (482)
T ss_pred HHhhccCc------------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEecc
Confidence 33221110 001367799999997642 24555544442 2344666653
No 96
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.39 E-value=0.001 Score=75.23 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=38.3
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-++++|-+..++.+.+.+..+. -...+-++|+.|+||||+|+.+.+
T Consensus 15 f~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk 60 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAK 60 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999887653 235577899999999999999876
No 97
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.38 E-value=0.00018 Score=81.12 Aligned_cols=139 Identities=13% Similarity=0.017 Sum_probs=74.5
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHH
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKF 235 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~ 235 (824)
++++|-+..++.|.+++..+. -...+-++|+.|+||||+|+.+.+.-.....+...+|.| .+.. .+..-....+..
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C--~sc~-~i~~~~h~dv~e 89 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC--ESCL-AVRRGAHPDVLE 89 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC--hhhH-HHhcCCCCceEE
Confidence 578999999998988887754 235678999999999999999887322122233345554 2110 000000000000
Q ss_pred hCCCCCcccccccCHHHHHHHHHH-hcCCCeEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEech
Q 003387 236 LMPSSRLSEIMDKNYEMKKIILHE-YLMTKRYLIVIDDVWSI--DMWDVIQEILPDNQNGSRVLITLTD 301 (824)
Q Consensus 236 l~~~~~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR~ 301 (824)
+..... ....+..++...+.. -..+++-++|+|+++.. ..++.+...+........+|++|..
T Consensus 90 l~~~~~---~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~ 155 (504)
T PRK14963 90 IDAASN---NSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTE 155 (504)
T ss_pred eccccc---CCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Confidence 000000 011111122222211 12346668999999855 4577777777655455555555543
No 98
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.38 E-value=0.0038 Score=64.22 Aligned_cols=115 Identities=12% Similarity=0.121 Sum_probs=78.4
Q ss_pred CCCceechh---hHHHHHHHHHcC-CCCeEEEEEEcCCCChHHHHHHHHhCCccc-----cCCCceeEEEECCCCCCCCH
Q 003387 155 SRDTVGLDD---RMEELLDLLIEG-PPQLSVVAILDSIGLDKTAFAGEAYNSSYV-----KHYFDCHAWITEPYSNEYDA 225 (824)
Q Consensus 155 ~~~~vGr~~---~~~~l~~~L~~~-~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~-----~~~F~~~~wv~~~vs~~~~~ 225 (824)
.+..+|... ..+++.++|... .....-+.|||..|.|||++++++.+..-. ...+ .++.|. ....++.
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~-PVv~vq--~P~~p~~ 109 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERI-PVVYVQ--MPPEPDE 109 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccc-cEEEEe--cCCCCCh
Confidence 456666443 345555555544 234566899999999999999998864211 1111 466777 8899999
Q ss_pred HHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHhcCC-CeEEEEEecCCCh
Q 003387 226 DQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMT-KRYLIVIDDVWSI 276 (824)
Q Consensus 226 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~~ 276 (824)
.++...|+.+++.... ...+...+.......|+. +-=+||+|++.+.
T Consensus 110 ~~~Y~~IL~~lgaP~~----~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~l 157 (302)
T PF05621_consen 110 RRFYSAILEALGAPYR----PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNL 157 (302)
T ss_pred HHHHHHHHHHhCcccC----CCCCHHHHHHHHHHHHHHcCCcEEEeechHHH
Confidence 9999999999998543 233445555555566654 4558899999753
No 99
>PRK08116 hypothetical protein; Validated
Probab=97.37 E-value=0.00086 Score=69.54 Aligned_cols=102 Identities=17% Similarity=0.188 Sum_probs=58.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHH
Q 003387 180 SVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHE 259 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 259 (824)
.-+.++|..|+|||.||.+|++ ++...-..+++++ ..+++..|........ ..+ ...+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~--~l~~~~~~v~~~~--------~~~ll~~i~~~~~~~~------~~~----~~~~~~ 174 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIAN--ELIEKGVPVIFVN--------FPQLLNRIKSTYKSSG------KED----ENEIIR 174 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEE--------HHHHHHHHHHHHhccc------ccc----HHHHHH
Confidence 4588999999999999999999 5544434455665 3445555555443211 111 222334
Q ss_pred hcCCCeEEEEEecCCC--hhhHHH--HHhhCCC-CCCCcEEEEEechH
Q 003387 260 YLMTKRYLIVIDDVWS--IDMWDV--IQEILPD-NQNGSRVLITLTDI 302 (824)
Q Consensus 260 ~L~~kr~LlVlDdv~~--~~~~~~--l~~~~~~-~~~gs~ilvTtR~~ 302 (824)
.+.+-. ||||||+.. ..+|.. +...+.. -.+|..+||||...
T Consensus 175 ~l~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 175 SLVNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred HhcCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 444434 899999943 344432 2222221 12456688888643
No 100
>PLN03025 replication factor C subunit; Provisional
Probab=97.37 E-value=0.00084 Score=71.98 Aligned_cols=122 Identities=14% Similarity=0.169 Sum_probs=69.0
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccc-cCCCce-eEEEECCCCCCCCHHHHHHHHH
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYV-KHYFDC-HAWITEPYSNEYDADQILDIVI 233 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~-~~~F~~-~~wv~~~vs~~~~~~~~~~~i~ 233 (824)
.+++|.++.++.|.+++..+. ...+-++|++|+||||+|+.+.+ .. ...|.. ++-+. .|...... ..++++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~G~GKTtla~~la~--~l~~~~~~~~~~eln--~sd~~~~~-~vr~~i 85 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGN--MPNLILSGPPGTGKTTSILALAH--ELLGPNYKEAVLELN--ASDDRGID-VVRNKI 85 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH--HHhcccCccceeeec--ccccccHH-HHHHHH
Confidence 568898888888887776554 44567999999999999999887 33 222321 22222 33332222 222222
Q ss_pred HHhCCCCCcccccccCHHHHHHHHHHhcCCCeEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEech
Q 003387 234 KFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWSI--DMWDVIQEILPDNQNGSRVLITLTD 301 (824)
Q Consensus 234 ~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR~ 301 (824)
+....... . .-.++.-++++|++... ...+.+...+......+++++++..
T Consensus 86 ~~~~~~~~----~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~ 138 (319)
T PLN03025 86 KMFAQKKV----T-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNT 138 (319)
T ss_pred HHHHhccc----c-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCC
Confidence 22111000 0 00245678999999865 3344454444443445777776643
No 101
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.35 E-value=0.00038 Score=74.84 Aligned_cols=55 Identities=16% Similarity=0.112 Sum_probs=44.9
Q ss_pred CCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCc-cccccchhhhccccCceecCCCc
Q 003387 541 ENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFS-YIDHTADEFWKMNKLRHLNFGSI 601 (824)
Q Consensus 541 ~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~L~~~ 601 (824)
..+.++++|++++|.++.+|. + ..+|++|.+++| .++.+|..+ .++|++|++++|
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~-L---P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV-L---PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC-C---CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 346889999999999999983 3 356999999998 888888755 358999998887
No 102
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.33 E-value=6.7e-05 Score=85.85 Aligned_cols=239 Identities=20% Similarity=0.130 Sum_probs=138.3
Q ss_pred CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCc-c-CccC----CccCCCCCcceEEeecCCC-CCccC-hhh
Q 003387 492 DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSL-V-LIQY----PSGIENLFLLRYLKLNIPS-LNSLP-SSL 563 (824)
Q Consensus 492 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~-~-i~~l----p~~i~~l~~Lr~L~L~~~~-i~~lp-~~i 563 (824)
++.++.|.+.++.... ..........++.|+.|+++++ . +... +.....+.+|+.|+++++. ++..- ..+
T Consensus 187 ~~~L~~l~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKIT--DDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred CchhhHhhhcccccCC--hhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 7889999888876642 2225678889999999999984 2 2211 2233447899999999987 55322 333
Q ss_pred hhcCCCccEeecCCcc-cc--ccchhhhccccCceecCCCccCCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCccc
Q 003387 564 LSNLLNLYTLDMPFSY-ID--HTADEFWKMNKLRHLNFGSITLPAHPGKFCGSLENLNFISALHPCCCTEDILGRLPNLR 640 (824)
Q Consensus 564 ~~~L~~L~~L~L~~~~-l~--~lp~~i~~L~~L~~L~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~ 640 (824)
...+++|++|.+.+|. ++ .+-.....+++|++|++++|.... ...+.....++++|+
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~--------------------d~~l~~~~~~c~~l~ 324 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT--------------------DSGLEALLKNCPNLR 324 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch--------------------HHHHHHHHHhCcchh
Confidence 2458999999988884 54 334445678999999998776531 222222255577777
Q ss_pred eEEEecccccchhhHHHHhccCCCCCeEEEeccC-CC-CCccEEEeCccCcCCCceEEEEEcccCCCCC-cccccCCCCC
Q 003387 641 NLRIRGDLSYNQSLLSKSLCRLSCLESLKLANES-KM-PRLSKIVLAEYLFPHSLTHLSFSNTDLMDDP-MPTLEKLPLL 717 (824)
Q Consensus 641 ~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~-~~-~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~-~~~l~~l~~L 717 (824)
.|.+..... +..++.+.+.... .. ..+..+ ....+++|+.+.|..|...... ...+.++|+|
T Consensus 325 ~l~~~~~~~------------c~~l~~~~l~~~~~~~~d~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 325 ELKLLSLNG------------CPSLTDLSLSGLLTLTSDDLAEL---ILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred hhhhhhcCC------------CccHHHHHHHHhhccCchhHhHH---HHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 766554431 2223322222100 00 011111 1145667777777777633222 2445566766
Q ss_pred CeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCccceec-cCc-ccCccEEEEecCCCCC
Q 003387 718 QVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMG-NAA-MPKLECLIINPCAYLK 778 (824)
Q Consensus 718 ~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~-~~~-lp~L~~L~l~~c~~l~ 778 (824)
. ..+..+ ...+..|+.|.+..|.....-... ... +.+++.+.+.+|+...
T Consensus 390 ~-~~l~~~----------~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 390 T-ESLELR----------LCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred c-hHHHHH----------hccCCccceEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence 3 322211 122333788888887654432211 111 6677888888887654
No 103
>PRK08727 hypothetical protein; Validated
Probab=97.33 E-value=0.00045 Score=70.26 Aligned_cols=36 Identities=14% Similarity=0.058 Sum_probs=28.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEE
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIT 216 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~ 216 (824)
...+.|+|..|+|||+|++++++ +..+....+++++
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~--~~~~~~~~~~y~~ 76 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCA--AAEQAGRSSAYLP 76 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 35699999999999999999988 4444444566776
No 104
>PRK08118 topology modulation protein; Reviewed
Probab=97.31 E-value=9.9e-05 Score=70.75 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=27.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccc-CCCceeEEE
Q 003387 180 SVVAILDSIGLDKTAFAGEAYNSSYVK-HYFDCHAWI 215 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~~~~~~-~~F~~~~wv 215 (824)
+.|.|+|++|+||||||+.+++...+. -+||..+|-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 358999999999999999999954333 456777753
No 105
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.30 E-value=5.7e-05 Score=66.86 Aligned_cols=87 Identities=15% Similarity=0.157 Sum_probs=62.2
Q ss_pred hhcccCcccEEEeeCccCccCCccCCC-CCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCc
Q 003387 516 FCGMFKLLRVLDLGSLVLIQYPSGIEN-LFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLR 594 (824)
Q Consensus 516 ~~~~~~~Lr~L~L~~~~i~~lp~~i~~-l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~ 594 (824)
.+.....|...+|++|.++++|+.+.. .+.+..|+|++|.+.++|.++ ..++.|+.|+++.|.+...|.-|..|.+|-
T Consensus 48 ~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~-Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEEL-AAMPALRSLNLRFNPLNAEPRVIAPLIKLD 126 (177)
T ss_pred HHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHH-hhhHHhhhcccccCccccchHHHHHHHhHH
Confidence 344555667777777777777776644 447777777777777777776 777777777777777777777777777777
Q ss_pred eecCCCccC
Q 003387 595 HLNFGSITL 603 (824)
Q Consensus 595 ~L~L~~~~~ 603 (824)
.|+..+|..
T Consensus 127 ~Lds~~na~ 135 (177)
T KOG4579|consen 127 MLDSPENAR 135 (177)
T ss_pred HhcCCCCcc
Confidence 776665544
No 106
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.30 E-value=0.0015 Score=70.30 Aligned_cols=44 Identities=20% Similarity=0.201 Sum_probs=38.2
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+++|+++.++.+.+++..+. ...+.++|..|+||||+|+.+.+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~ 60 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALAR 60 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHH
Confidence 568899999999999987654 44579999999999999999988
No 107
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.29 E-value=0.0012 Score=77.45 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=38.4
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|-+.-++.|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 15 FddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk 60 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAK 60 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999987653 234557999999999999999987
No 108
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.24 E-value=0.002 Score=73.17 Aligned_cols=46 Identities=20% Similarity=0.150 Sum_probs=39.2
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-++++|.+...+.|.+++..+. -...+-++|+.|+||||+|+.+.+
T Consensus 14 FddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK 59 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAK 59 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998664 246778999999999999998876
No 109
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.19 E-value=0.0046 Score=74.52 Aligned_cols=259 Identities=15% Similarity=0.111 Sum_probs=136.6
Q ss_pred CceechhhHHHHHHHHHcC-CCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEE-CCCCCCC---CHHHHHHH
Q 003387 157 DTVGLDDRMEELLDLLIEG-PPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIT-EPYSNEY---DADQILDI 231 (824)
Q Consensus 157 ~~vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~-~~vs~~~---~~~~~~~~ 231 (824)
+++||+.+.+.|...+... .+...|+.|.|..|||||+|++.|.. .+.+.+...+--. ++...+. ...+.+++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHHHHH
Confidence 4689999999999998763 34577999999999999999999998 5554432222111 0011111 12234445
Q ss_pred HHHHhCCCC-------------------C------------------cccccccCHHHH-----HHHHHHhcC-CCeEEE
Q 003387 232 VIKFLMPSS-------------------R------------------LSEIMDKNYEMK-----KIILHEYLM-TKRYLI 268 (824)
Q Consensus 232 i~~~l~~~~-------------------~------------------~~~~~~~~~~~~-----~~~l~~~L~-~kr~Ll 268 (824)
++.++.... . ..++.......+ ...|..+.. .|+.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 554442111 0 000111112222 233444443 469999
Q ss_pred EEecC-CChh-hHHHHHhhCCCCC----CCcEEEEEechHHHHh------------------------hcccccCCcCcC
Q 003387 269 VIDDV-WSID-MWDVIQEILPDNQ----NGSRVLITLTDIRIII------------------------SFQFEDGENMRL 318 (824)
Q Consensus 269 VlDdv-~~~~-~~~~l~~~~~~~~----~gs~ilvTtR~~~v~~------------------------~f~~~~~~~~~~ 318 (824)
|+||+ |-+. .++-+........ .-..|..+........ +..... .....
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l-~~~~~ 237 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATL-GCTKL 237 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHh-CCccc
Confidence 99999 4332 2222221111110 0112222222111111 111100 01134
Q ss_pred ccccchhhHHHhcCCCchhHHHHHhHHHhh--------hhhhhcc----CCC-ccccc---c--cc-cCCCCchHHHhHh
Q 003387 319 DLVPTGGPLRATYKGRPFLILYHGSISLEE--------NIREAVE----TPL-GLRYI---K--CL-MLPFCLKPCFIYL 379 (824)
Q Consensus 319 ~~~~~~~~i~~~c~GlPlai~~~~~~l~~~--------~~~~~~~----~~~-~~~~~---l--~~-~L~~~lk~cfl~~ 379 (824)
...+....|++|..|.|+-+.-+-..+..+ ...|..+ ... ....+ + ++ .||...++..-..
T Consensus 238 ~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~A 317 (849)
T COG3899 238 LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKAA 317 (849)
T ss_pred ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 456778999999999999998888877332 2223221 111 12221 2 22 9999999988888
Q ss_pred ccCCCCceechhHHHHHHHHcCCCCCChHHHHHHHHHHHHhccccce
Q 003387 380 SVFPAHQEISTRQLYQLWIAEGFIPDNSEATAESYLEQLIKEGFVEA 426 (824)
Q Consensus 380 s~fp~~~~i~~~~Li~~W~a~g~i~~~~e~~~~~~~~~Lv~rsllq~ 426 (824)
|++-.. |+.+-|-..|-. .....+....+.|....++..
T Consensus 318 A~iG~~--F~l~~La~l~~~------~~~~~a~~l~~al~e~lI~~~ 356 (849)
T COG3899 318 ACIGNR--FDLDTLAALAED------SPALEAAALLDALQEGLILPL 356 (849)
T ss_pred HHhCcc--CCHHHHHHHHhh------chHHHHHHHHHHhHhhceecc
Confidence 887654 445555554432 234556666776666655543
No 110
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.19 E-value=0.00021 Score=75.38 Aligned_cols=156 Identities=15% Similarity=0.102 Sum_probs=100.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCccccCCCc-eeEEEECCCCCCCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHH
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFD-CHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKII 256 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~-~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 256 (824)
..+-+.++|.|||||||++-.+.. +..-|. .+.+|. ...--|...+.-.+...++... .+.+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vd--l~pitD~~~v~~~~ag~~gl~~-------~~g~~~~~~ 80 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVD--LAPITDPALVFPTLAGALGLHV-------QPGDSAVDT 80 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---Hhhhcccceeeee--ccccCchhHhHHHHHhhccccc-------ccchHHHHH
Confidence 478899999999999999988876 566675 566666 4444455555555555565432 222445567
Q ss_pred HHHhcCCCeEEEEEecCCChh-hHHHHHhhCCCCCCCcEEEEEechHHHHh-----------hccc-------ccC----
Q 003387 257 LHEYLMTKRYLIVIDDVWSID-MWDVIQEILPDNQNGSRVLITLTDIRIII-----------SFQF-------EDG---- 313 (824)
Q Consensus 257 l~~~L~~kr~LlVlDdv~~~~-~~~~l~~~~~~~~~gs~ilvTtR~~~v~~-----------~f~~-------~~~---- 313 (824)
+..++.++|.++|+||.-... +-..+.-.+..+...-.|+.|+|..-... .|.. ...
T Consensus 81 ~~~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 81 LVRRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred HHHHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhcc
Confidence 778888999999999997652 22223333344444566888888765444 1210 000
Q ss_pred C-cCcCccccchhhHHHhcCCCchhHHHHHhHH
Q 003387 314 E-NMRLDLVPTGGPLRATYKGRPFLILYHGSIS 345 (824)
Q Consensus 314 ~-~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l 345 (824)
. .....-.....+|.++..|.|++|...++..
T Consensus 161 ~f~l~~~~~a~v~~icr~ldg~~laielaaarv 193 (414)
T COG3903 161 SFWLTDDNAAAVAEICRRLDGIPLAIELAAARV 193 (414)
T ss_pred ceeecCCchHHHHHHHHHhhcchHHHHHHHHHH
Confidence 0 0111224467889999999999999988776
No 111
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.16 E-value=0.003 Score=71.60 Aligned_cols=46 Identities=13% Similarity=0.095 Sum_probs=38.5
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-+++||-+.-++.|.+++..+. -...+-++|+.|+||||+|+.+.+
T Consensus 15 f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk 60 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAK 60 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999997664 234578999999999999988876
No 112
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.16 E-value=0.00097 Score=73.33 Aligned_cols=49 Identities=18% Similarity=0.169 Sum_probs=39.4
Q ss_pred CCCCCceechhhHHHHHHHHHcC-----------CCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 153 SKSRDTVGLDDRMEELLDLLIEG-----------PPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 153 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
+..+++.|+++.++++.+.+... -...+-|-++|++|.|||++|+++++
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~ 187 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH 187 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHH
Confidence 34457899999999998876431 12356788999999999999999998
No 113
>PRK05642 DNA replication initiation factor; Validated
Probab=97.15 E-value=0.0012 Score=67.07 Aligned_cols=36 Identities=8% Similarity=0.102 Sum_probs=27.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEE
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIT 216 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~ 216 (824)
...+.|+|..|+|||.|++++++ +....-..++|++
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~--~~~~~~~~v~y~~ 80 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACL--RFEQRGEPAVYLP 80 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEee
Confidence 36789999999999999999987 4333324566776
No 114
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.14 E-value=0.0031 Score=70.69 Aligned_cols=45 Identities=18% Similarity=0.160 Sum_probs=36.8
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
++++|.+...+.+...+..+. -...+-++|++|+||||+|+.+.+
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~ 58 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAK 58 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 579999888888887776554 235678999999999999999977
No 115
>PRK10536 hypothetical protein; Provisional
Probab=97.12 E-value=0.0032 Score=63.52 Aligned_cols=57 Identities=9% Similarity=0.083 Sum_probs=42.0
Q ss_pred CCCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEE
Q 003387 154 KSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAW 214 (824)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~w 214 (824)
+...+.++......++.+|... .+|.+.|..|.|||+||.++.-+.-..+.|+..+-
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred CCccccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 3456778999999999988663 39999999999999999987774222344544443
No 116
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.11 E-value=0.0029 Score=72.62 Aligned_cols=46 Identities=24% Similarity=0.233 Sum_probs=39.1
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-++++|.+..++.|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 15 FddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk 60 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAK 60 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence 3689999999999999988654 235678999999999999998876
No 117
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.11 E-value=0.0041 Score=70.01 Aligned_cols=46 Identities=13% Similarity=0.013 Sum_probs=37.9
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|-+..+..+...+..+. -...+-++|+.|+||||+|+.+++
T Consensus 20 f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk 65 (507)
T PRK06645 20 FAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAK 65 (507)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 3578999999998888776653 245778999999999999999977
No 118
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.11 E-value=0.00077 Score=61.80 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=19.3
Q ss_pred EEEEcCCCChHHHHHHHHhCC
Q 003387 182 VAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 182 i~I~G~gGvGKTtLa~~v~~~ 202 (824)
|-|+|+.|+||||+|+.+.++
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 568999999999999999993
No 119
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.10 E-value=0.0015 Score=67.20 Aligned_cols=117 Identities=18% Similarity=0.254 Sum_probs=66.8
Q ss_pred CCCCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHH
Q 003387 153 SKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIV 232 (824)
Q Consensus 153 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i 232 (824)
+...+++|-+.-+.. ++..+ .+.-+..||++|+||||||+.+.+..+... ..||. .|-.-.-..=.++|
T Consensus 141 vGQ~hlv~q~gllrs---~ieq~--~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfve--lSAt~a~t~dvR~i 209 (554)
T KOG2028|consen 141 VGQSHLVGQDGLLRS---LIEQN--RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVE--LSATNAKTNDVRDI 209 (554)
T ss_pred cchhhhcCcchHHHH---HHHcC--CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEE--EeccccchHHHHHH
Confidence 334455555443333 33333 477788999999999999999999543333 44565 44432222223333
Q ss_pred HHHhCCCCCcccccccCHHHHHHHHHHhcCCCeEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEE--EechH
Q 003387 233 IKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWSI--DMWDVIQEILPDNQNGSRVLI--TLTDI 302 (824)
Q Consensus 233 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilv--TtR~~ 302 (824)
+++-.. ...+-++|..|.+|.|..- .+-+. .+|.-.+|+-++| ||.++
T Consensus 210 fe~aq~-------------------~~~l~krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENP 261 (554)
T KOG2028|consen 210 FEQAQN-------------------EKSLTKRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENP 261 (554)
T ss_pred HHHHHH-------------------HHhhhcceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCC
Confidence 333211 1123468899999999643 22222 3466667887776 44444
No 120
>PRK12377 putative replication protein; Provisional
Probab=97.08 E-value=0.0025 Score=64.92 Aligned_cols=74 Identities=15% Similarity=0.060 Sum_probs=46.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHHHH
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILH 258 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 258 (824)
...+.++|..|+|||+||.++.+ .+......+++++ + .+++..|-...... .... .+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~i~--~------~~l~~~l~~~~~~~--------~~~~----~~l 158 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIVVT--V------PDVMSRLHESYDNG--------QSGE----KFL 158 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEE--H------HHHHHHHHHHHhcc--------chHH----HHH
Confidence 46789999999999999999999 5555555567776 3 24444444332111 0111 222
Q ss_pred HhcCCCeEEEEEecCCC
Q 003387 259 EYLMTKRYLIVIDDVWS 275 (824)
Q Consensus 259 ~~L~~kr~LlVlDdv~~ 275 (824)
+.+ .+-=||||||+..
T Consensus 159 ~~l-~~~dLLiIDDlg~ 174 (248)
T PRK12377 159 QEL-CKVDLLVLDEIGI 174 (248)
T ss_pred HHh-cCCCEEEEcCCCC
Confidence 223 3556999999943
No 121
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.06 E-value=0.001 Score=66.72 Aligned_cols=35 Identities=29% Similarity=0.369 Sum_probs=30.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEE
Q 003387 180 SVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIT 216 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~ 216 (824)
-.++|+|..|.|||||+..+.. .....|+.+++++
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t 48 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLIT 48 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEe
Confidence 3578999999999999999998 5778898877776
No 122
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.04 E-value=0.0018 Score=78.34 Aligned_cols=44 Identities=18% Similarity=0.281 Sum_probs=37.6
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
++++||+++++++++.|.... ..-+.++|.+|+|||++|+.+..
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~ 222 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQ 222 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHH
Confidence 468999999999999998654 22446999999999999998877
No 123
>PRK08181 transposase; Validated
Probab=97.04 E-value=0.0032 Score=64.94 Aligned_cols=35 Identities=9% Similarity=-0.102 Sum_probs=26.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEE
Q 003387 180 SVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIT 216 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~ 216 (824)
.-+.++|..|+|||.||.++.+ +.......++|++
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHH--HHHHcCCceeeee
Confidence 3489999999999999999988 4444444556665
No 124
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.02 E-value=0.0018 Score=66.06 Aligned_cols=58 Identities=10% Similarity=0.111 Sum_probs=36.2
Q ss_pred CCCceechhh-HHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEE
Q 003387 155 SRDTVGLDDR-MEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIT 216 (824)
Q Consensus 155 ~~~~vGr~~~-~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~ 216 (824)
++-++|-... ...+.++.... ....+.|+|+.|+|||+|++.+++ .....-..+.++.
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~~--~~~~l~l~Gp~G~GKThLl~a~~~--~~~~~~~~v~y~~ 80 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQE--HSGYIYLWSREGAGRSHLLHAACA--ELSQRGRAVGYVP 80 (235)
T ss_pred cccccCccHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEE
Confidence 3445573333 33333333322 245789999999999999999998 4433334556776
No 125
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.01 E-value=0.0065 Score=69.35 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=37.8
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-++++|-+.-++.+.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 15 f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk 60 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAK 60 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999988654 234567899999999999998866
No 126
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.00 E-value=0.0046 Score=68.31 Aligned_cols=46 Identities=15% Similarity=-0.011 Sum_probs=37.7
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-++++|.+..++.|.+++..+. -...+-++|+.|+||||+|..+.+
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~ 60 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAK 60 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHH
Confidence 3578899999998888887654 234578899999999999988776
No 127
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.98 E-value=0.0066 Score=64.14 Aligned_cols=118 Identities=11% Similarity=0.156 Sum_probs=67.5
Q ss_pred echhhHHHHHHHHHcCC--CCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhC
Q 003387 160 GLDDRMEELLDLLIEGP--PQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLM 237 (824)
Q Consensus 160 Gr~~~~~~l~~~L~~~~--~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~ 237 (824)
++....+...+++..-. ...+-+.++|..|+|||.||.++.+ +....=..+.+++ ++ +++.++.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~--~l~~~g~~v~~~~--~~------~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIAN--ELAKKGVSSTLLH--FP------EFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEEE--HH------HHHHHHHHHHh
Confidence 44455555566665321 1346789999999999999999999 4443334466776 32 45555544432
Q ss_pred CCCCcccccccCHHHHHHHHHHhcCCCeEEEEEecCCCh--hhHH--HHHhhC-CCC-CCCcEEEEEech
Q 003387 238 PSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWSI--DMWD--VIQEIL-PDN-QNGSRVLITLTD 301 (824)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~--~l~~~~-~~~-~~gs~ilvTtR~ 301 (824)
.. +.. ..+ +.+ .+-=||||||+..+ .+|. ++...+ ... ..+-.+|+||--
T Consensus 205 ~~---------~~~---~~l-~~l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 DG---------SVK---EKI-DAV-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred cC---------cHH---HHH-HHh-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 11 111 222 223 24558999999654 4564 343333 221 234457777764
No 128
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.95 E-value=0.0091 Score=65.28 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=38.1
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|.+..++.+.+++..+. -...+-++|+.|+||||+|+.+.+
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~ 58 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAK 58 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999987654 245678899999999999988765
No 129
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.92 E-value=0.0069 Score=67.67 Aligned_cols=128 Identities=15% Similarity=0.178 Sum_probs=74.2
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCC------cc------------cc-CCCceeEEE
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNS------SY------------VK-HYFDCHAWI 215 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~------~~------------~~-~~F~~~~wv 215 (824)
-.++||-+..++.+.+.+..+. -...+-++|+.|+||||+|+.+.+- +. +. ..+..++.+
T Consensus 12 f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ei 90 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEI 90 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEE
Confidence 3688999998888888887654 2347889999999999999888651 00 00 111223334
Q ss_pred ECCCCCCCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHhcCCCeEEEEEecCCCh--hhHHHHHhhCCCCCCCc
Q 003387 216 TEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWSI--DMWDVIQEILPDNQNGS 293 (824)
Q Consensus 216 ~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs 293 (824)
+ .+....+.+ .++|++..... -..+++-++|+|++... ...+.+...+..-.+.+
T Consensus 91 d--aas~~~vdd-IR~Iie~~~~~--------------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v 147 (491)
T PRK14964 91 D--AASNTSVDD-IKVILENSCYL--------------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHV 147 (491)
T ss_pred e--cccCCCHHH-HHHHHHHHHhc--------------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCe
Confidence 3 332222222 11222221100 01245668999999754 45677777666655667
Q ss_pred EEEEEech-HHHHh
Q 003387 294 RVLITLTD-IRIII 306 (824)
Q Consensus 294 ~ilvTtR~-~~v~~ 306 (824)
++|++|.. ..+..
T Consensus 148 ~fIlatte~~Kl~~ 161 (491)
T PRK14964 148 KFILATTEVKKIPV 161 (491)
T ss_pred EEEEEeCChHHHHH
Confidence 67666543 34433
No 130
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.91 E-value=0.00099 Score=65.32 Aligned_cols=54 Identities=20% Similarity=0.178 Sum_probs=37.0
Q ss_pred CCCceechhhHHHHHHHHH---cCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCc
Q 003387 155 SRDTVGLDDRMEELLDLLI---EGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFD 210 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~---~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~ 210 (824)
-+++||-+.-++.+.-++. ...+.+.-+-.||++|+||||||..|.+ +....|.
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~ 79 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK 79 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--EE
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCeE
Confidence 3689999888887655544 2344578889999999999999999999 6666663
No 131
>CHL00181 cbbX CbbX; Provisional
Probab=96.91 E-value=0.0079 Score=63.07 Aligned_cols=46 Identities=20% Similarity=0.168 Sum_probs=31.8
Q ss_pred CCceechhhHHHHHHHHH---c-------C---CCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLI---E-------G---PPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~---~-------~---~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+++|.+..+++|.++.. - + ......+.++|.+|+||||+|+.+++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 357787777776554432 1 1 11234578899999999999999977
No 132
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.89 E-value=0.0032 Score=76.21 Aligned_cols=44 Identities=16% Similarity=0.267 Sum_probs=37.8
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
++++||+.+++++++.|.... -.-+.++|.+|+||||+|+.+..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHH
Confidence 579999999999999998765 33455899999999999999887
No 133
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.88 E-value=0.0029 Score=75.58 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=37.6
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
++++||+.+++++++.|.... ..-+.++|.+|+|||++|+.+.+
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~ 225 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLAL 225 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHH
Confidence 479999999999999887664 23456899999999999999987
No 134
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.88 E-value=0.006 Score=60.78 Aligned_cols=122 Identities=14% Similarity=0.187 Sum_probs=71.2
Q ss_pred CCCCCceechhhHHHHHHHHH---cCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHH
Q 003387 153 SKSRDTVGLDDRMEELLDLLI---EGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQIL 229 (824)
Q Consensus 153 ~~~~~~vGr~~~~~~l~~~L~---~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~ 229 (824)
+.-+.++|.|..++.|++=.. .+. ...-+-+||..|.|||++++++.+. ....= .+ -|. |++.
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~-pannvLL~G~rGtGKSSlVkall~~--y~~~G-LR-lIe--v~k~------- 89 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGL-PANNVLLWGARGTGKSSLVKALLNE--YADQG-LR-LIE--VSKE------- 89 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCC-CCcceEEecCCCCCHHHHHHHHHHH--HhhcC-ce-EEE--ECHH-------
Confidence 456789999999998876432 232 3556678999999999999999883 32211 11 122 3221
Q ss_pred HHHHHHhCCCCCcccccccCHHHHHHHHHHhcCCCeEEEEEecCCC---hhhHHHHHhhCCCC---CCCcEEEE-EechH
Q 003387 230 DIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWS---IDMWDVIQEILPDN---QNGSRVLI-TLTDI 302 (824)
Q Consensus 230 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~---~~~~~~l~~~~~~~---~~gs~ilv-TtR~~ 302 (824)
+-.+...+.+.|+. +..||+|.+||+.= +.....++..+..+ .+...+|. ||-..
T Consensus 90 ----------------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRR 151 (249)
T PF05673_consen 90 ----------------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRR 151 (249)
T ss_pred ----------------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchh
Confidence 11122333333331 35799999999963 34566676666532 23344444 44334
Q ss_pred HHHh
Q 003387 303 RIII 306 (824)
Q Consensus 303 ~v~~ 306 (824)
+...
T Consensus 152 HLv~ 155 (249)
T PF05673_consen 152 HLVP 155 (249)
T ss_pred hccc
Confidence 4433
No 135
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.87 E-value=0.0083 Score=65.62 Aligned_cols=46 Identities=15% Similarity=0.063 Sum_probs=37.6
Q ss_pred CCceechhhHHHHHHHHHcCCC--------CeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIEGPP--------QLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~--------~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
++++|-+..++.+.+++..+.. -..-+-++|+.|+||||+|+.+.+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~ 58 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAA 58 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4688999999999999976531 246688999999999999988755
No 136
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.87 E-value=0.0031 Score=63.95 Aligned_cols=101 Identities=14% Similarity=0.036 Sum_probs=58.0
Q ss_pred HHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHH-hCC-CCCcccc
Q 003387 168 LLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKF-LMP-SSRLSEI 245 (824)
Q Consensus 168 l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~-l~~-~~~~~~~ 245 (824)
|-++|..+=..-.++-|+|.+|+|||++|.++.. .....-..++|++ .. .++..++.+ ++.. +.. .....-.
T Consensus 12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~--~~~~~~~~v~yi~--~e-~~~~~r~~~-~~~~~~~~~~~~~~~~ 85 (225)
T PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAV--EAAKNGKKVIYID--TE-GLSPERFKQ-IAGEDFEELLSNIIIF 85 (225)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEE--CC-CCCHHHHHH-HHhhChHhHhhCeEEE
Confidence 4445545544578999999999999999999887 3434456789998 55 566655432 3322 100 0000001
Q ss_pred cccCH---HHHHHHHHHhcCCCeEEEEEecCC
Q 003387 246 MDKNY---EMKKIILHEYLMTKRYLIVIDDVW 274 (824)
Q Consensus 246 ~~~~~---~~~~~~l~~~L~~kr~LlVlDdv~ 274 (824)
...+. .+..+.+.+.++.+--++|+|.+.
T Consensus 86 ~~~~~~~~~~~i~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 86 EPSSFEEQSEAIRKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred eCCCHHHHHHHHHHHHHHHHhcccEEEEeCcH
Confidence 11222 223344444444566688888874
No 137
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.87 E-value=0.0045 Score=71.36 Aligned_cols=46 Identities=20% Similarity=0.164 Sum_probs=38.4
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.++||-+..++.|.+.+..+. -...+-++|..|+||||+|+.+.+
T Consensus 15 f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk 60 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAK 60 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999998887654 234567899999999999999877
No 138
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.86 E-value=0.00096 Score=63.39 Aligned_cols=107 Identities=23% Similarity=0.203 Sum_probs=76.5
Q ss_pred cccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccch--hhhccccCceecCC
Q 003387 522 LLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTAD--EFWKMNKLRHLNFG 599 (824)
Q Consensus 522 ~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~L~ 599 (824)
..-.+||++|.+..++. +..+..|.+|.|+.|.|+.+.+.+-..+++|.+|.|.+|++.++-+ -+..+++|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 45678888888765543 6678889999999999998888774567789999999988877643 26678888888777
Q ss_pred CccCCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEeccc
Q 003387 600 SITLPAHPGKFCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDL 648 (824)
Q Consensus 600 ~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 648 (824)
+|.+... . ..... .+..+++|+.|+.....
T Consensus 122 ~Npv~~k--------~----------~YR~y-vl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 122 GNPVEHK--------K----------NYRLY-VLYKLPSLRTLDFQKVT 151 (233)
T ss_pred CCchhcc--------c----------CceeE-EEEecCcceEeehhhhh
Confidence 7665421 0 11111 26678888888887764
No 139
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.86 E-value=0.0029 Score=64.81 Aligned_cols=101 Identities=11% Similarity=0.158 Sum_probs=59.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCc-eeEEEECCCCCCCC-HHHHHHHHHHHhCCC--------CCccccccc
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFD-CHAWITEPYSNEYD-ADQILDIVIKFLMPS--------SRLSEIMDK 248 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~-~~~wv~~~vs~~~~-~~~~~~~i~~~l~~~--------~~~~~~~~~ 248 (824)
-.-++|+|..|+|||||++.+++ .++.+|+ .++++- +.+..+ +.++.+++...=... .+.+.....
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~--iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAG--VGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEE--eccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 45789999999999999999999 6666664 445555 655543 345555554421110 110101111
Q ss_pred CHHHHHHHHHHhc--C-CCeEEEEEecCCCh-hhHHHHH
Q 003387 249 NYEMKKIILHEYL--M-TKRYLIVIDDVWSI-DMWDVIQ 283 (824)
Q Consensus 249 ~~~~~~~~l~~~L--~-~kr~LlVlDdv~~~-~~~~~l~ 283 (824)
-....+..+.+++ + ++.+|+++||+-.. ..+.++.
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~A~reis 183 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVS 183 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChhHHHHHHHHHH
Confidence 1122334455555 3 89999999999654 3344444
No 140
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.86 E-value=0.00024 Score=70.14 Aligned_cols=241 Identities=16% Similarity=0.101 Sum_probs=141.7
Q ss_pred CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCc----cCC-------ccCCCCCcceEEeecCCCCC-cc
Q 003387 492 DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLI----QYP-------SGIENLFLLRYLKLNIPSLN-SL 559 (824)
Q Consensus 492 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~----~lp-------~~i~~l~~Lr~L~L~~~~i~-~l 559 (824)
...+..+.++++....--...+...+.+-++|++.+++.-... .+| +.+-+|++|+..+||.|-+. +.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 5666777777777642112356677788888999988865321 333 44568899999999998876 44
Q ss_pred Chhh---hhcCCCccEeecCCccccccchh-hh-------------ccccCceecCCCccCCCCCCCCCCCCCCCCeeec
Q 003387 560 PSSL---LSNLLNLYTLDMPFSYIDHTADE-FW-------------KMNKLRHLNFGSITLPAHPGKFCGSLENLNFISA 622 (824)
Q Consensus 560 p~~i---~~~L~~L~~L~L~~~~l~~lp~~-i~-------------~L~~L~~L~L~~~~~~~~~~p~i~~L~~L~~l~~ 622 (824)
|+.+ +++-++|.+|.+++|.+..+... |+ +-|.|+......|++.++.
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs--------------- 173 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGS--------------- 173 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCc---------------
Confidence 4432 37889999999999977655322 22 3456777777666664321
Q ss_pred cCCCcchhhhcCCCCccceEEEecccccc---hhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCc-cCcCCCceEEEE
Q 003387 623 LHPCCCTEDILGRLPNLRNLRIRGDLSYN---QSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAE-YLFPHSLTHLSF 698 (824)
Q Consensus 623 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~-~~~~~~L~~L~L 698 (824)
.......+..-.+|+.+.+..+.... ..-+...+.-+.+|+.|+|..|. +...-+..+.. +..-+.|+.|.+
T Consensus 174 ---~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al~~W~~lrEL~l 249 (388)
T COG5238 174 ---KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADALCEWNLLRELRL 249 (388)
T ss_pred ---HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHhcccchhhhccc
Confidence 01111113333567766666554111 11122334455677777777652 11111110000 123355788888
Q ss_pred EcccCCCCCccc----cc--CCCCCCeEEeeccccCCCeeee------cCCCCCCccEEeeccCC
Q 003387 699 SNTDLMDDPMPT----LE--KLPLLQVLKLKQNSYSGRKLTC------GSYGFPNLKVLHLKSML 751 (824)
Q Consensus 699 ~~~~l~~~~~~~----l~--~l~~L~~L~L~~~~~~~~~~~~------~~~~~~~L~~L~L~~~~ 751 (824)
..|-++...... +. ..|+|..|...+|...+..+.. .....|-|..|.+.+|.
T Consensus 250 nDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 250 NDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred cchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 888765543322 21 3688888888888766544333 23467888888888765
No 141
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.85 E-value=0.0083 Score=69.01 Aligned_cols=46 Identities=15% Similarity=0.158 Sum_probs=37.6
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-+++||-+..++.|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 15 f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk 60 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAK 60 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578998888888888887764 235678999999999999998844
No 142
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.84 E-value=0.0061 Score=68.37 Aligned_cols=49 Identities=24% Similarity=0.201 Sum_probs=38.7
Q ss_pred CCCCCceechhhHHHHHHHHHcC-----------CCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 153 SKSRDTVGLDDRMEELLDLLIEG-----------PPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 153 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
+.-.++.|.+..+++|.+.+... -...+-+-++|++|.|||++|+++++
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~ 238 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVAN 238 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHH
Confidence 33456889999999998876431 12345688999999999999999999
No 143
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.83 E-value=0.0025 Score=64.07 Aligned_cols=122 Identities=14% Similarity=0.143 Sum_probs=66.8
Q ss_pred Cceechh-hHHHHHHHHHcC-CCCeEEEEEEcCCCChHHHHHHHHhCCccccCCC-c-eeEEEECCCCCCCCHHHHHHHH
Q 003387 157 DTVGLDD-RMEELLDLLIEG-PPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYF-D-CHAWITEPYSNEYDADQILDIV 232 (824)
Q Consensus 157 ~~vGr~~-~~~~l~~~L~~~-~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F-~-~~~wv~~~vs~~~~~~~~~~~i 232 (824)
-++|-.. ..-...+.+... +.....+.|+|..|+|||.|.+++++ ++.+.. . .+++++ ..+....+
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~~--------~~~f~~~~ 79 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYLS--------AEEFIREF 79 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEEE--------HHHHHHHH
T ss_pred CCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceeec--------HHHHHHHH
Confidence 3456433 233444444443 33455688999999999999999999 554332 2 344554 44555555
Q ss_pred HHHhCCCCCcccccccCHHHHHHHHHHhcCCCeEEEEEecCCCh---hhHHHHHh-hCCC-CCCCcEEEEEechH
Q 003387 233 IKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWSI---DMWDVIQE-ILPD-NQNGSRVLITLTDI 302 (824)
Q Consensus 233 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~-~~~~-~~~gs~ilvTtR~~ 302 (824)
+..+... . ...+++.+++ -=+|++||+... ..|..... .+.. ...|-+||+|++..
T Consensus 80 ~~~~~~~---------~----~~~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~ 140 (219)
T PF00308_consen 80 ADALRDG---------E----IEEFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRP 140 (219)
T ss_dssp HHHHHTT---------S----HHHHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-
T ss_pred HHHHHcc---------c----chhhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCC
Confidence 5554321 1 1334444443 337889999754 22332222 1211 13466899998543
No 144
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.81 E-value=0.0039 Score=64.73 Aligned_cols=45 Identities=22% Similarity=0.198 Sum_probs=33.0
Q ss_pred CceechhhHHHHHHHHHc----------C---CCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 157 DTVGLDDRMEELLDLLIE----------G---PPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 157 ~~vGr~~~~~~l~~~L~~----------~---~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.++|.+..+++|.+.... + .+...-+.++|++|.||||+|+.+++
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 578888877766543221 1 23456778999999999999999976
No 145
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.81 E-value=0.0036 Score=68.59 Aligned_cols=49 Identities=20% Similarity=0.124 Sum_probs=38.7
Q ss_pred CCCCCceechhhHHHHHHHHHcC-----------CCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 153 SKSRDTVGLDDRMEELLDLLIEG-----------PPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 153 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
+.-.++.|.+..+++|.+.+... -...+-+.++|++|.|||++|+++.+
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~ 201 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAH 201 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 33457889999998888776421 12457788999999999999999998
No 146
>PRK09087 hypothetical protein; Validated
Probab=96.81 E-value=0.0068 Score=61.18 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
...+.|+|..|+|||+|++.+++.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999999874
No 147
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.80 E-value=0.0033 Score=66.96 Aligned_cols=108 Identities=11% Similarity=-0.021 Sum_probs=65.2
Q ss_pred hHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCC-ce-eEEEECCCCCC-CCHHHHHHHHHHHhCCCC
Q 003387 164 RMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYF-DC-HAWITEPYSNE-YDADQILDIVIKFLMPSS 240 (824)
Q Consensus 164 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F-~~-~~wv~~~vs~~-~~~~~~~~~i~~~l~~~~ 240 (824)
-..++++.+..-.. -.-+.|+|..|+|||||++.+.+ .+.... +. ++|+. +.+. -++.++.+.+...+....
T Consensus 119 ~~~RvID~l~PiGk-GQR~LIvG~pGtGKTTLl~~la~--~i~~~~~dv~~vv~l--IgER~~EV~df~~~i~~~Vvast 193 (380)
T PRK12608 119 LSMRVVDLVAPIGK-GQRGLIVAPPRAGKTVLLQQIAA--AVAANHPEVHLMVLL--IDERPEEVTDMRRSVKGEVYAST 193 (380)
T ss_pred hhHhhhhheeecCC-CceEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEE--ecCCCCCHHHHHHHHhhhEEeec
Confidence 34557777764221 24569999999999999999888 443322 33 35666 5544 367788888877665532
Q ss_pred C-cccccccCHHHHHHHHHHhc--CCCeEEEEEecCCCh
Q 003387 241 R-LSEIMDKNYEMKKIILHEYL--MTKRYLIVIDDVWSI 276 (824)
Q Consensus 241 ~-~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~ 276 (824)
. .+.............+.+++ ++++++||+|++-..
T Consensus 194 ~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 194 FDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 1 11111111222222333333 579999999999644
No 148
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.79 E-value=0.021 Score=61.93 Aligned_cols=47 Identities=19% Similarity=0.147 Sum_probs=38.3
Q ss_pred CCCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 154 KSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
...+++|.+..++.+.+.+..+. -...+-++|+.|+||||+|..+.+
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~ 63 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMAR 63 (365)
T ss_pred chhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999888764 234688999999999999976554
No 149
>PHA00729 NTP-binding motif containing protein
Probab=96.78 E-value=0.0038 Score=61.90 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=25.9
Q ss_pred HHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 167 ELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 167 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
++++.+...+ ...|.|.|.+|+||||||..+.+
T Consensus 7 ~~~~~l~~~~--f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 7 KIVSAYNNNG--FVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred HHHHHHhcCC--eEEEEEECCCCCCHHHHHHHHHH
Confidence 3445554443 56789999999999999999988
No 150
>PRK06526 transposase; Provisional
Probab=96.77 E-value=0.0012 Score=67.83 Aligned_cols=23 Identities=26% Similarity=0.056 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.-+.|+|++|+|||+||..+.+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~ 120 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGI 120 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHH
Confidence 34589999999999999999987
No 151
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.76 E-value=0.0095 Score=60.46 Aligned_cols=103 Identities=17% Similarity=0.143 Sum_probs=61.6
Q ss_pred HHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCC------ceeEEEECCCCCCCCHHHHHHHHHHHhCCCC-
Q 003387 168 LLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYF------DCHAWITEPYSNEYDADQILDIVIKFLMPSS- 240 (824)
Q Consensus 168 l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F------~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~- 240 (824)
+-++|..+-..-.++.|+|.+|.|||+||..+.-. ....- ..++|++ ....++..++. +++.......
T Consensus 8 lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~--~e~~~~~~rl~-~~~~~~~~~~~ 82 (226)
T cd01393 8 LDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYID--TEGAFRPERLV-QLAVRFGLDPE 82 (226)
T ss_pred HHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEe--cCCCCCHHHHH-HHHHHhccchh
Confidence 44444445445789999999999999999988662 22223 5678998 77777766554 3333332211
Q ss_pred ----CcccccccCHHHHHHHHHHhcC---C-CeEEEEEecCCC
Q 003387 241 ----RLSEIMDKNYEMKKIILHEYLM---T-KRYLIVIDDVWS 275 (824)
Q Consensus 241 ----~~~~~~~~~~~~~~~~l~~~L~---~-kr~LlVlDdv~~ 275 (824)
...-....+.++....+.+.++ . +--|||+|.+..
T Consensus 83 ~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 83 EVLDNIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred hhhccEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 0000122345555555555443 3 455899999853
No 152
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.75 E-value=0.018 Score=56.45 Aligned_cols=40 Identities=10% Similarity=0.219 Sum_probs=27.8
Q ss_pred CCeEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEechH
Q 003387 263 TKRYLIVIDDVWSI--DMWDVIQEILPDNQNGSRVLITLTDI 302 (824)
Q Consensus 263 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR~~ 302 (824)
+.+-++|+||+... ..++.+...+....+.+.+|++|++.
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~ 136 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSP 136 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 45668999999754 45777777776655566777777654
No 153
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.75 E-value=0.011 Score=64.99 Aligned_cols=45 Identities=20% Similarity=0.195 Sum_probs=38.6
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
++++|.+...+.+.+.+..+. -...+-++|+.|+||||+|+.+.+
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~ 61 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILAR 61 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 578899999999999998754 245788999999999999999877
No 154
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.74 E-value=0.009 Score=62.66 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=30.3
Q ss_pred CceechhhHHHHHHHHH---c-------C---CCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 157 DTVGLDDRMEELLDLLI---E-------G---PPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 157 ~~vGr~~~~~~l~~~L~---~-------~---~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.++|.++.+++|.++.. . + .....-+.++|.+|.||||+|+.+.+
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHH
Confidence 46787777776655422 1 1 01123578999999999999977766
No 155
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.73 E-value=0.0045 Score=75.21 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=37.4
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
++++||+.+++++++.|.... -.-+.++|.+|+|||++|..+..
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~ 216 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQ 216 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHH
Confidence 569999999999999997764 23445899999999999999887
No 156
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.72 E-value=0.0052 Score=67.89 Aligned_cols=46 Identities=22% Similarity=0.181 Sum_probs=38.7
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|-+..+..|..++..+. -...+-++|+.|+||||+|+.+.+
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk 62 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAK 62 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999888765 224578999999999999999987
No 157
>PRK07261 topology modulation protein; Provisional
Probab=96.72 E-value=0.0036 Score=60.34 Aligned_cols=67 Identities=15% Similarity=0.177 Sum_probs=41.2
Q ss_pred EEEEEcCCCChHHHHHHHHhCCcccc-CCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHH
Q 003387 181 VVAILDSIGLDKTAFAGEAYNSSYVK-HYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHE 259 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~~~~~~-~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 259 (824)
.|.|+|++|+||||||+.+.....+. -+.|...|-. .. ...+.++....+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~--~~-------------------------~~~~~~~~~~~~~~ 54 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP--NW-------------------------QERDDDDMIADISN 54 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc--cc-------------------------ccCCHHHHHHHHHH
Confidence 48999999999999999987632111 1234444432 11 12233455566666
Q ss_pred hcCCCeEEEEEecCCCh
Q 003387 260 YLMTKRYLIVIDDVWSI 276 (824)
Q Consensus 260 ~L~~kr~LlVlDdv~~~ 276 (824)
.+.+.+ .|+|+....
T Consensus 55 ~~~~~~--wIidg~~~~ 69 (171)
T PRK07261 55 FLLKHD--WIIDGNYSW 69 (171)
T ss_pred HHhCCC--EEEcCcchh
Confidence 666655 677888654
No 158
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.71 E-value=0.0031 Score=75.39 Aligned_cols=115 Identities=11% Similarity=0.210 Sum_probs=67.0
Q ss_pred CCceechhhHHHHHHHHHcC-------CCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHH
Q 003387 156 RDTVGLDDRMEELLDLLIEG-------PPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQI 228 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~ 228 (824)
..++|.+..++.|.+.+... .....++.++|+.|+|||+||+.+.. .. +...+.++ .|+..+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~--~l---~~~~~~~d--~se~~~~~-- 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE--AL---GVHLERFD--MSEYMEKH-- 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH--Hh---cCCeEEEe--Cchhhhcc--
Confidence 45889999999998887642 12355788999999999999999988 33 23345555 44422211
Q ss_pred HHHHHHHhCCCCCcccccccCHHHHHHHHHHhcCC-CeEEEEEecCCCh--hhHHHHHhhCC
Q 003387 229 LDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMT-KRYLIVIDDVWSI--DMWDVIQEILP 287 (824)
Q Consensus 229 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~~--~~~~~l~~~~~ 287 (824)
.+...++...+. ....... .+.+.++. ..-+++||++... +.++.+...+.
T Consensus 525 --~~~~lig~~~gy--vg~~~~~----~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld 578 (731)
T TIGR02639 525 --TVSRLIGAPPGY--VGFEQGG----LLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMD 578 (731)
T ss_pred --cHHHHhcCCCCC--cccchhh----HHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhc
Confidence 112222221110 1111112 23334433 3459999999865 45666665554
No 159
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.69 E-value=0.011 Score=67.29 Aligned_cols=46 Identities=13% Similarity=0.140 Sum_probs=38.7
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|.+..++.+.+.+..+. -...+-++|+.|+||||+|+.+.+
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk 60 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAK 60 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999887653 235788999999999999999876
No 160
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.68 E-value=0.0066 Score=61.66 Aligned_cols=95 Identities=16% Similarity=0.107 Sum_probs=53.6
Q ss_pred hHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCcc
Q 003387 164 RMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLS 243 (824)
Q Consensus 164 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~ 243 (824)
.+..+.++...-..+...+.++|.+|+|||+||.++.+ .....-..+++++ ..++...+-.....
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~--~l~~~g~~v~~it--------~~~l~~~l~~~~~~----- 148 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICN--ELLLRGKSVLIIT--------VADIMSAMKDTFSN----- 148 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEE--------HHHHHHHHHHHHhh-----
Confidence 34444444433233345789999999999999999999 4443334555665 34444444433211
Q ss_pred cccccCHHHHHHHHHHhcCCCeEEEEEecCCCh--hhHH
Q 003387 244 EIMDKNYEMKKIILHEYLMTKRYLIVIDDVWSI--DMWD 280 (824)
Q Consensus 244 ~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~ 280 (824)
...+.. .+.+.+. +-=+||+||+... .+|+
T Consensus 149 --~~~~~~----~~l~~l~-~~dlLvIDDig~~~~s~~~ 180 (244)
T PRK07952 149 --SETSEE----QLLNDLS-NVDLLVIDEIGVQTESRYE 180 (244)
T ss_pred --ccccHH----HHHHHhc-cCCEEEEeCCCCCCCCHHH
Confidence 011111 2333344 3448888999654 3454
No 161
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.66 E-value=0.018 Score=62.00 Aligned_cols=48 Identities=19% Similarity=0.160 Sum_probs=40.1
Q ss_pred CCCCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 153 SKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 153 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.....++|-+...+.+...+..+. -...+-|+|..|+||||+|..+.+
T Consensus 20 ~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~ 67 (351)
T PRK09112 20 SENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLAN 67 (351)
T ss_pred CchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHH
Confidence 345789999999999999997764 345688999999999999988766
No 162
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.66 E-value=0.0082 Score=67.07 Aligned_cols=120 Identities=19% Similarity=0.261 Sum_probs=64.9
Q ss_pred CceechhhH--HHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCC-c-eeEEEECCCCCCCCHHHHHHHH
Q 003387 157 DTVGLDDRM--EELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYF-D-CHAWITEPYSNEYDADQILDIV 232 (824)
Q Consensus 157 ~~vGr~~~~--~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F-~-~~~wv~~~vs~~~~~~~~~~~i 232 (824)
-++|-.... ....++..... ...-+.|+|..|+|||+|++++.+ ++.... . .++|++ ..++..++
T Consensus 107 Fv~g~~n~~a~~~~~~~~~~~~-~~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~--------~~~f~~~~ 175 (440)
T PRK14088 107 FVVGPGNSFAYHAALEVAKNPG-RYNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYIT--------SEKFLNDL 175 (440)
T ss_pred cccCCchHHHHHHHHHHHhCcC-CCCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEE--------HHHHHHHH
Confidence 355744432 23333333222 245599999999999999999999 554433 3 355665 23456666
Q ss_pred HHHhCCCCCcccccccCHHHHHHHHHHhcCCCeEEEEEecCCCh---hhH-HHHHhhCCC-CCCCcEEEEEec
Q 003387 233 IKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWSI---DMW-DVIQEILPD-NQNGSRVLITLT 300 (824)
Q Consensus 233 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~---~~~-~~l~~~~~~-~~~gs~ilvTtR 300 (824)
...+... +.+ .+.+..+.+.-+|++||+... ..+ +.+...+.. ...|..||+||.
T Consensus 176 ~~~~~~~---------~~~----~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd 235 (440)
T PRK14088 176 VDSMKEG---------KLN----EFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_pred HHHHhcc---------cHH----HHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECC
Confidence 6555321 112 223333334558999999743 111 222222211 112456888874
No 163
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.63 E-value=0.0092 Score=60.61 Aligned_cols=44 Identities=14% Similarity=0.171 Sum_probs=29.6
Q ss_pred eechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 003387 159 VGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 159 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
.|.+.........+..+......+.|+|..|+|||+||+.+++.
T Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 22 AGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred cCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45544443333333232233567889999999999999999983
No 164
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.63 E-value=0.0064 Score=62.13 Aligned_cols=104 Identities=14% Similarity=0.129 Sum_probs=59.4
Q ss_pred HHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCC----CceeEEEECCCCCCCCHHHHHHHHHHHhCCCCC---
Q 003387 169 LDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHY----FDCHAWITEPYSNEYDADQILDIVIKFLMPSSR--- 241 (824)
Q Consensus 169 ~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~----F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~--- 241 (824)
-++|..+-..-.++.|+|.+|+||||||.++.-....... -..++|++ ....++..++.+ +++..+....
T Consensus 9 D~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~--~e~~~~~~rl~~-~~~~~~~~~~~~~ 85 (235)
T cd01123 9 DELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID--TEGTFRPERLVQ-IAERFGLDPEEVL 85 (235)
T ss_pred HhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe--CCCCcCHHHHHH-HHHHhccChHhHh
Confidence 3444444445689999999999999999998643222221 36789999 777777655443 3444332110
Q ss_pred --cccccccCH---HHHHHHHHHhcC-C-CeEEEEEecCCC
Q 003387 242 --LSEIMDKNY---EMKKIILHEYLM-T-KRYLIVIDDVWS 275 (824)
Q Consensus 242 --~~~~~~~~~---~~~~~~l~~~L~-~-kr~LlVlDdv~~ 275 (824)
..-....+. ......+.+.+. . +--+||+|-+..
T Consensus 86 ~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 86 DNIYVARAYNSDHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred cCEEEEecCCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 000111122 223344444443 3 566888888853
No 165
>PRK09183 transposase/IS protein; Provisional
Probab=96.62 E-value=0.0025 Score=65.74 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=19.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..+.|+|..|+|||+||..+.+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4677999999999999999977
No 166
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.60 E-value=0.0031 Score=64.80 Aligned_cols=76 Identities=22% Similarity=0.095 Sum_probs=47.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHHH
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIIL 257 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 257 (824)
+..-+.++|.+|+|||.||.++.+ ++...=-.+.+++ ..++..++...... ......|
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~--~l~~~g~sv~f~~--------~~el~~~Lk~~~~~------------~~~~~~l 161 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGN--ELLKAGISVLFIT--------APDLLSKLKAAFDE------------GRLEEKL 161 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEEE--------HHHHHHHHHHHHhc------------CchHHHH
Confidence 466789999999999999999999 5553323566666 34455555544332 1112223
Q ss_pred HHhcCCCeEEEEEecCCCh
Q 003387 258 HEYLMTKRYLIVIDDVWSI 276 (824)
Q Consensus 258 ~~~L~~kr~LlVlDdv~~~ 276 (824)
.+.++ +-=||||||+-..
T Consensus 162 ~~~l~-~~dlLIiDDlG~~ 179 (254)
T COG1484 162 LRELK-KVDLLIIDDIGYE 179 (254)
T ss_pred HHHhh-cCCEEEEecccCc
Confidence 33221 2338999999653
No 167
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.60 E-value=0.0058 Score=61.20 Aligned_cols=97 Identities=12% Similarity=0.036 Sum_probs=56.2
Q ss_pred HHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHh-CCC-CCcccccc--
Q 003387 172 LIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFL-MPS-SRLSEIMD-- 247 (824)
Q Consensus 172 L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l-~~~-~~~~~~~~-- 247 (824)
|..+=..-+++-|+|.+|+|||++|.++.. .....-..++|++ ... ++..++.+. ++.. ... ....-...
T Consensus 5 l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~--~~~~~g~~v~yi~--~e~-~~~~rl~~~-~~~~~~~~~~~i~~~~~~~ 78 (209)
T TIGR02237 5 LGGGVERGTITQIYGPPGSGKTNICMILAV--NAARQGKKVVYID--TEG-LSPERFKQI-AEDRPERALSNFIVFEVFD 78 (209)
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEE--CCC-CCHHHHHHH-HHhChHHHhcCEEEEECCC
Confidence 444434568999999999999999998876 3434457899998 654 666665543 2221 000 00000111
Q ss_pred -cCHHHHHHHHHHhcCC-CeEEEEEecCC
Q 003387 248 -KNYEMKKIILHEYLMT-KRYLIVIDDVW 274 (824)
Q Consensus 248 -~~~~~~~~~l~~~L~~-kr~LlVlDdv~ 274 (824)
.+.......+.+.+.. +.-+||+|-+.
T Consensus 79 ~~~~~~~~~~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 79 FDEQGVAIQKTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHHHHHHHHHHhhcCccEEEEeCcH
Confidence 1122334555555543 44578888874
No 168
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.60 E-value=0.0018 Score=68.64 Aligned_cols=58 Identities=12% Similarity=0.254 Sum_probs=45.8
Q ss_pred CceechhhHHHHHHHHHcC----CCCeEEEEEEcCCCChHHHHHHHHhCCccc-----cCCCceeEE
Q 003387 157 DTVGLDDRMEELLDLLIEG----PPQLSVVAILDSIGLDKTAFAGEAYNSSYV-----KHYFDCHAW 214 (824)
Q Consensus 157 ~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~-----~~~F~~~~w 214 (824)
+++|.++.++++++++... ....+++.++|++|.||||||+.+.+.-+. .+.|...-|
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 7999999999999999763 235689999999999999999999883211 225555666
No 169
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.59 E-value=0.013 Score=67.57 Aligned_cols=46 Identities=13% Similarity=-0.058 Sum_probs=37.4
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|-+..++.+.+++..+. -...+-++|+.|+||||+|+.+.+
T Consensus 15 f~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk 60 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAK 60 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999888887653 234588999999999999988766
No 170
>PRK06620 hypothetical protein; Validated
Probab=96.57 E-value=0.0071 Score=60.46 Aligned_cols=49 Identities=12% Similarity=-0.098 Sum_probs=31.4
Q ss_pred CCCCceec-hh-hHHHHHHHHHcCCCCe--EEEEEEcCCCChHHHHHHHHhCC
Q 003387 154 KSRDTVGL-DD-RMEELLDLLIEGPPQL--SVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 154 ~~~~~vGr-~~-~~~~l~~~L~~~~~~~--~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
.++-+||- .. ....+.++-.....+. +.+.|+|+.|+|||+|++.+.+.
T Consensus 15 fd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 15 PDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred chhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhc
Confidence 34566775 22 2344444432111112 67899999999999999998884
No 171
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.57 E-value=0.0095 Score=65.55 Aligned_cols=96 Identities=18% Similarity=0.242 Sum_probs=62.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCC-CCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHH
Q 003387 181 VVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSN-EYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHE 259 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 259 (824)
++.|+|+-++||||+++.+.. ...+. .+++. .-. ..+..++ .+... .+.+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~--~~~~~---~iy~~--~~d~~~~~~~l-~d~~~---------------------~~~~ 89 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIK--GLLEE---IIYIN--FDDLRLDRIEL-LDLLR---------------------AYIE 89 (398)
T ss_pred EEEEECCccccHHHHHHHHHh--hCCcc---eEEEE--ecchhcchhhH-HHHHH---------------------HHHH
Confidence 999999999999999977766 23222 44443 111 1111111 11111 1111
Q ss_pred hcCCCeEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEechHHHHh
Q 003387 260 YLMTKRYLIVIDDVWSIDMWDVIQEILPDNQNGSRVLITLTDIRIII 306 (824)
Q Consensus 260 ~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~ 306 (824)
.-..++.+|+||.|....+|+.....+.+.++. +|++|+-+.....
T Consensus 90 ~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~ 135 (398)
T COG1373 90 LKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLS 135 (398)
T ss_pred hhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhc
Confidence 111178899999999999999999988888777 8999988876554
No 172
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.56 E-value=0.0056 Score=67.58 Aligned_cols=52 Identities=21% Similarity=0.204 Sum_probs=39.7
Q ss_pred CCceechhhHHHHHHHHHcC-----------CCCeEEEEEEcCCCChHHHHHHHHhCCccccCCC
Q 003387 156 RDTVGLDDRMEELLDLLIEG-----------PPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYF 209 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F 209 (824)
.++.|.+..+++|.+.+... -...+-+.++|++|.|||++|+++.+ +....|
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f 245 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF 245 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE
Confidence 45788999999888877421 12345678999999999999999999 555444
No 173
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.54 E-value=0.0014 Score=63.43 Aligned_cols=36 Identities=19% Similarity=0.005 Sum_probs=25.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEE
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIT 216 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~ 216 (824)
..-+.++|..|+|||.||.++.+ +....=..+.|++
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~--~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIAN--EAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHH--HhccCCcceeEee
Confidence 45699999999999999999988 3333223466776
No 174
>PRK06921 hypothetical protein; Provisional
Probab=96.53 E-value=0.008 Score=62.24 Aligned_cols=36 Identities=19% Similarity=0.076 Sum_probs=28.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCC-CceeEEEE
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHY-FDCHAWIT 216 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~-F~~~~wv~ 216 (824)
..-+.++|..|+|||+||.++.+ ++... -..+++++
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEEE
Confidence 56789999999999999999999 55444 34567776
No 175
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.53 E-value=0.025 Score=64.92 Aligned_cols=46 Identities=22% Similarity=0.096 Sum_probs=38.5
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-++++|.+..++.|.+++..+. -...+-++|+.|+||||+|+.+.+
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk 57 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILAR 57 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999988654 234578999999999999998877
No 176
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.53 E-value=0.02 Score=66.51 Aligned_cols=135 Identities=13% Similarity=0.139 Sum_probs=73.2
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHH
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIK 234 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~ 234 (824)
-++++|-+..++.|.+++..+. -...+-++|..|+||||+|+.+.+ .+.-.. +-. ....++.....+.|..
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~--~l~c~~----~~~--~~~~c~~c~~c~~i~~ 85 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAK--AVNCTT----NDP--KGRPCGTCEMCRAIAE 85 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHH--HhcCCC----CCC--CCCCCccCHHHHHHhc
Confidence 3589999999999988887654 235667999999999999999876 221000 000 1112222233333322
Q ss_pred HhCCCCCcccc---cccCHHHHHHHHHHhc-----CCCeEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEech
Q 003387 235 FLMPSSRLSEI---MDKNYEMKKIILHEYL-----MTKRYLIVIDDVWSI--DMWDVIQEILPDNQNGSRVLITLTD 301 (824)
Q Consensus 235 ~l~~~~~~~~~---~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR~ 301 (824)
..... ..++ .....++..+ +.+.+ .+++-++|+|++... ...+.+...+......+.+|++|..
T Consensus 86 ~~~~d--~~~i~~~~~~~vd~ir~-ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~ 159 (585)
T PRK14950 86 GSAVD--VIEMDAASHTSVDDARE-IIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTE 159 (585)
T ss_pred CCCCe--EEEEeccccCCHHHHHH-HHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 21110 0000 0111222221 11211 245678999998644 4567776666554456666666543
No 177
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.51 E-value=0.01 Score=66.09 Aligned_cols=121 Identities=17% Similarity=0.213 Sum_probs=63.0
Q ss_pred CceechhhH--HHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCc--eeEEEECCCCCCCCHHHHHHHH
Q 003387 157 DTVGLDDRM--EELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFD--CHAWITEPYSNEYDADQILDIV 232 (824)
Q Consensus 157 ~~vGr~~~~--~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~--~~~wv~~~vs~~~~~~~~~~~i 232 (824)
-++|.+... ..+.++..........+.|+|..|+|||+|++++++ ++..... .+++++ ..++..++
T Consensus 112 fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~--~l~~~~~~~~v~yi~--------~~~~~~~~ 181 (405)
T TIGR00362 112 FVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGN--EILENNPNAKVVYVS--------SEKFTNDF 181 (405)
T ss_pred cccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHH--HHHHhCCCCcEEEEE--------HHHHHHHH
Confidence 356755542 223333332222345688999999999999999999 5544332 344554 23444455
Q ss_pred HHHhCCCCCcccccccCHHHHHHHHHHhcCCCeEEEEEecCCChh---hH-HHHHhhCCC-CCCCcEEEEEech
Q 003387 233 IKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWSID---MW-DVIQEILPD-NQNGSRVLITLTD 301 (824)
Q Consensus 233 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~---~~-~~l~~~~~~-~~~gs~ilvTtR~ 301 (824)
...+... ..+. +.+.+++ .-+||+||+.... .+ +.+...+.. ...|..+|+|+..
T Consensus 182 ~~~~~~~---------~~~~----~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~ 241 (405)
T TIGR00362 182 VNALRNN---------KMEE----FKEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDR 241 (405)
T ss_pred HHHHHcC---------CHHH----HHHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCC
Confidence 5554321 1122 2333322 2388899997431 11 222222221 1234567777753
No 178
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.51 E-value=0.0062 Score=72.06 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=37.1
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
++++||+.+++++++.|.... ..-+-++|.+|+|||++|+.+.+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 469999999999999988753 22345799999999999999887
No 179
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.00043 Score=68.69 Aligned_cols=83 Identities=19% Similarity=0.169 Sum_probs=62.0
Q ss_pred cccCcccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccch--hhhccccCce
Q 003387 518 GMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTAD--EFWKMNKLRH 595 (824)
Q Consensus 518 ~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~ 595 (824)
+.+.+.+.|++.||.+..+. -+.+++.|++|.|+-|+|+.|.+ +..|++|+.|.|+.|.|..+-+ -+.++++|+.
T Consensus 16 sdl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred hHHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 34567788888888887552 23568889999999888888865 3788899999998887777643 3667888888
Q ss_pred ecCCCccC
Q 003387 596 LNFGSITL 603 (824)
Q Consensus 596 L~L~~~~~ 603 (824)
|-|..|.-
T Consensus 93 LWL~ENPC 100 (388)
T KOG2123|consen 93 LWLDENPC 100 (388)
T ss_pred HhhccCCc
Confidence 87765543
No 180
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.48 E-value=0.014 Score=62.67 Aligned_cols=117 Identities=12% Similarity=0.063 Sum_probs=76.7
Q ss_pred CCCCceechhhHHHHHHHHHcC--CCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHH
Q 003387 154 KSRDTVGLDDRMEELLDLLIEG--PPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDI 231 (824)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~ 231 (824)
.+..++||+.++..+.+++... .+..+-+-|.|.+|.|||.+...++.+......=-.++.+. ...--....++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~in--c~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYIN--CTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEe--eccccchHHHHHH
Confidence 4567999999999999998763 34577899999999999999999999632211111234443 2222355677888
Q ss_pred HHHHhCCCCCcccccccCHHHHHHHHHHhcCC--CeEEEEEecCCCh
Q 003387 232 VIKFLMPSSRLSEIMDKNYEMKKIILHEYLMT--KRYLIVIDDVWSI 276 (824)
Q Consensus 232 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~--kr~LlVlDdv~~~ 276 (824)
|...+..... ......+....+.+..+. +-+|+|||.++.-
T Consensus 226 I~~~~~q~~~----s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L 268 (529)
T KOG2227|consen 226 IFSSLLQDLV----SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHL 268 (529)
T ss_pred HHHHHHHHhc----CCchhHHHHHHHHHHHhcccceEEEEechhhHH
Confidence 8777732111 111124555666666644 3689999999753
No 181
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.47 E-value=0.0062 Score=73.50 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=38.0
Q ss_pred CCceechhhHHHHHHHHHcC-------CCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIEG-------PPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..++|.+..++.+.+.+... .....++.++|+.|+|||.+|+.+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~ 618 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAE 618 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999988531 23456889999999999999988866
No 182
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.46 E-value=0.0022 Score=58.77 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=29.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCC-CceeEEEECCCC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHY-FDCHAWITEPYS 220 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~-F~~~~wv~~~vs 220 (824)
..-|+|.||+|+||||+++.+.+ ..+.. |...-+++.+|.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e--~L~~~g~kvgGf~t~EVR 45 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAE--KLREKGYKVGGFITPEVR 45 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHH--HHHhcCceeeeEEeeeee
Confidence 45689999999999999999998 55444 765555553343
No 183
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.46 E-value=0.006 Score=73.59 Aligned_cols=44 Identities=20% Similarity=0.322 Sum_probs=37.9
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
++++||+.++.++++.|.... ..-+.++|.+|+||||+|+.+.+
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~ 230 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLAL 230 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHH
Confidence 579999999999999987764 33456999999999999999887
No 184
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.46 E-value=0.0086 Score=72.09 Aligned_cols=52 Identities=21% Similarity=0.362 Sum_probs=40.8
Q ss_pred CCceechhhHHHHHHHHHc----CCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCC
Q 003387 156 RDTVGLDDRMEELLDLLIE----GPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYF 209 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F 209 (824)
.+++|.+..+++|.+++.. +.....++.++|++|+||||+|+.+.+ .....|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~--~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK--ALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH--HhcCCe
Confidence 4588999999999987753 222345899999999999999999998 555444
No 185
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.46 E-value=0.015 Score=70.57 Aligned_cols=46 Identities=15% Similarity=0.290 Sum_probs=37.7
Q ss_pred CCceechhhHHHHHHHHHcC-------CCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIEG-------PPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..++|.+..++.+.+.+... .....++.++|+.|+|||++|+.+.+
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~ 620 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAN 620 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 46889999999998888642 22246888999999999999999987
No 186
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.45 E-value=0.011 Score=54.94 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 003387 181 VVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~ 201 (824)
||.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999986
No 187
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.45 E-value=0.0018 Score=58.47 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 003387 181 VVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~ 201 (824)
||+|+|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999988
No 188
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.44 E-value=0.01 Score=56.47 Aligned_cols=39 Identities=13% Similarity=0.126 Sum_probs=29.3
Q ss_pred EEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCC
Q 003387 181 VVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEY 223 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~ 223 (824)
++.|+|.+|+||||+++.+.. .....-..++|+. .....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~~~--~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLAL--NIATKGGKVVYVD--IEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHH--HHHhcCCEEEEEE--CCcch
Confidence 468999999999999999988 4444445677887 55443
No 189
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.42 E-value=0.013 Score=71.08 Aligned_cols=132 Identities=14% Similarity=0.211 Sum_probs=73.7
Q ss_pred CCceechhhHHHHHHHHHcC-------CCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHH
Q 003387 156 RDTVGLDDRMEELLDLLIEG-------PPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQI 228 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~ 228 (824)
..++|-+..++.|.+.+... .....++-++|+.|+|||+||+.+.+ .+-..-...+-++ .+...+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~--~l~~~~~~~~~~d--~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS--YFFGSEDAMIRLD--MSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH--HhcCCccceEEEE--chhccccccH
Confidence 56899999999998888632 22345677899999999999998876 3211112333444 4432221111
Q ss_pred HHHHHHHhCCCCCcccccccCHHHHHHHHHHhcCCCe-EEEEEecCCCh--hhHHHHHhhCCCC-----------CCCcE
Q 003387 229 LDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKR-YLIVIDDVWSI--DMWDVIQEILPDN-----------QNGSR 294 (824)
Q Consensus 229 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr-~LlVlDdv~~~--~~~~~l~~~~~~~-----------~~gs~ 294 (824)
..-++...+. ....... .+.+.++.++ -+++||++... +.++.+...+..+ ...+-
T Consensus 585 ----~~l~g~~~gy--vg~~~~~----~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i 654 (821)
T CHL00095 585 ----SKLIGSPPGY--VGYNEGG----QLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTL 654 (821)
T ss_pred ----HHhcCCCCcc--cCcCccc----hHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceE
Confidence 1112211110 1111112 3344454444 58889999865 4566666665542 13455
Q ss_pred EEEEech
Q 003387 295 VLITLTD 301 (824)
Q Consensus 295 ilvTtR~ 301 (824)
+|+||..
T Consensus 655 ~I~Tsn~ 661 (821)
T CHL00095 655 IIMTSNL 661 (821)
T ss_pred EEEeCCc
Confidence 6667654
No 190
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.42 E-value=0.0073 Score=69.62 Aligned_cols=47 Identities=13% Similarity=0.089 Sum_probs=39.9
Q ss_pred CCCceechhhHHHHHHHHHcCC---CCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDLLIEGP---PQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~---~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-++++|-+..++++..++.... ...+++.|+|+.|.||||+++.+.+
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~ 132 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSK 132 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999987642 2346899999999999999999998
No 191
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.42 E-value=0.021 Score=65.81 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=39.0
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|.+..++.|.+.+..+. -...+-++|+.|+||||+|+.+.+
T Consensus 23 f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk 68 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILAR 68 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999987654 244678899999999999999877
No 192
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.41 E-value=0.0057 Score=65.14 Aligned_cols=35 Identities=11% Similarity=-0.002 Sum_probs=27.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEE
Q 003387 180 SVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIT 216 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~ 216 (824)
.-+.++|..|+|||+||.++.+ ++...-..+++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~--~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAK--ELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHH--HHHHCCCeEEEEE
Confidence 6799999999999999999999 4433334566776
No 193
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.41 E-value=0.032 Score=62.93 Aligned_cols=45 Identities=13% Similarity=0.067 Sum_probs=37.4
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+++|-+..++.+.+++..+. -...+-++|+.|+||||+|+.+..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk 60 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAK 60 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 578899999999999997754 234567899999999999988766
No 194
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.0044 Score=69.95 Aligned_cols=53 Identities=19% Similarity=0.328 Sum_probs=44.3
Q ss_pred CCCceechhhHHHHHHHHHcC----CCCeEEEEEEcCCCChHHHHHHHHhCCccccCCC
Q 003387 155 SRDTVGLDDRMEELLDLLIEG----PPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYF 209 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F 209 (824)
+.+-+|.++-+++|++.|.-. .-.-.+++.||++|||||.|++.|.+ .....|
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf 378 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF 378 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE
Confidence 456789999999999999642 33457999999999999999999999 677766
No 195
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.40 E-value=0.013 Score=66.05 Aligned_cols=121 Identities=16% Similarity=0.199 Sum_probs=63.9
Q ss_pred Cceechhh--HHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCc--eeEEEECCCCCCCCHHHHHHHH
Q 003387 157 DTVGLDDR--MEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFD--CHAWITEPYSNEYDADQILDIV 232 (824)
Q Consensus 157 ~~vGr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~--~~~wv~~~vs~~~~~~~~~~~i 232 (824)
-++|.... ......+.........-+.|+|..|+|||+|++++.+ ++...+. .+++++ ..++..++
T Consensus 124 fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~--------~~~~~~~~ 193 (450)
T PRK00149 124 FVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVT--------SEKFTNDF 193 (450)
T ss_pred cccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEE--------HHHHHHHH
Confidence 35565443 3333333333222345689999999999999999999 5555442 344555 23344445
Q ss_pred HHHhCCCCCcccccccCHHHHHHHHHHhcCCCeEEEEEecCCCh---hhH-HHHHhhCCC-CCCCcEEEEEech
Q 003387 233 IKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWSI---DMW-DVIQEILPD-NQNGSRVLITLTD 301 (824)
Q Consensus 233 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~---~~~-~~l~~~~~~-~~~gs~ilvTtR~ 301 (824)
...+... .. ..+.+.++ +--+||+||+... ..+ +.+...+.. ...|..|++||..
T Consensus 194 ~~~~~~~---------~~----~~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~ 253 (450)
T PRK00149 194 VNALRNN---------TM----EEFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDR 253 (450)
T ss_pred HHHHHcC---------cH----HHHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCC
Confidence 4444221 11 22333333 2348999999643 111 223222211 1124557777754
No 196
>PRK13695 putative NTPase; Provisional
Probab=96.40 E-value=0.0031 Score=61.12 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=24.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCCcccc-CCCceeEEEE
Q 003387 181 VVAILDSIGLDKTAFAGEAYNSSYVK-HYFDCHAWIT 216 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~~~~~~-~~F~~~~wv~ 216 (824)
.|+|+|.+|+|||||++.+++. .. ..|....|++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~--l~~~G~~~~g~~~ 36 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL--LKEEGYKVGGFYT 36 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEc
Confidence 4789999999999999999873 32 2344444554
No 197
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.39 E-value=0.065 Score=57.73 Aligned_cols=166 Identities=16% Similarity=0.153 Sum_probs=95.2
Q ss_pred hhhHHHHHHHHHcCC-CCeEEEEEEcCCCChHHHHHHHHhCCccccCC----C---ceeEEEECCCCCCCCHHHHHHHHH
Q 003387 162 DDRMEELLDLLIEGP-PQLSVVAILDSIGLDKTAFAGEAYNSSYVKHY----F---DCHAWITEPYSNEYDADQILDIVI 233 (824)
Q Consensus 162 ~~~~~~l~~~L~~~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~----F---~~~~wv~~~vs~~~~~~~~~~~i~ 233 (824)
+.-.+.|.+.+...+ ....+|||.|.=|+||||+.+.+.+ +.+.. + ..-+|-. -...--...++.+|.
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~--~L~~~~~~~~~~i~fn~w~~--~~~~~~~~~~~~~l~ 77 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKE--ELKEDNKEKYIFIYFNAWEY--DGEDDLWASFLEELF 77 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHH--HHhcccccceeeEEEccccC--CCcchHHHHHHHHHH
Confidence 455677888887754 6789999999999999999999988 44443 1 1223333 221212334555555
Q ss_pred HHhCCCCCc----------------------------cc----------------------------------ccccCHH
Q 003387 234 KFLMPSSRL----------------------------SE----------------------------------IMDKNYE 251 (824)
Q Consensus 234 ~~l~~~~~~----------------------------~~----------------------------------~~~~~~~ 251 (824)
.++...... +. ....+.+
T Consensus 78 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (325)
T PF07693_consen 78 DQLEKHFGSKKIKLYAKKKLKSLKIKFKIKINLSKAIPLALIGLPALILAVAIAKLKAELKNAFKSLEEKFLKKLKKEVE 157 (325)
T ss_pred HHHHHhcCccchhHHHhhhhhhhhceeeeeeecceeehHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhHHHH
Confidence 555431100 00 0001122
Q ss_pred HHHHHHHHhcC--CCeEEEEEecCCCh------hhHHHHHhhCCCCCCCcEEEEEechHHHHhhcccccCCcCcCccccc
Q 003387 252 MKKIILHEYLM--TKRYLIVIDDVWSI------DMWDVIQEILPDNQNGSRVLITLTDIRIIISFQFEDGENMRLDLVPT 323 (824)
Q Consensus 252 ~~~~~l~~~L~--~kr~LlVlDdv~~~------~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~f~~~~~~~~~~~~~~~ 323 (824)
+....+.+.|. ++|.++|+||++.. +.|+.+...+.. ++..+|+..-.+.++.+.....+... ....
T Consensus 158 ~~~~~~~~~l~~~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~--~~i~~Il~~D~~~l~~ai~~~~~~~~---~~~~ 232 (325)
T PF07693_consen 158 ELISKIKKKLKESKKRIVIIIDDLDRCSPEEIVELLEAIKLLLDF--PNIIFILAFDPEILEKAIEKNYGEGF---DEID 232 (325)
T ss_pred HHHHHHHHhhhcCCceEEEEEcchhcCCcHHHHHHHHHHHHhcCC--CCeEEEEEecHHHHHHHHHhhcCccc---cccc
Confidence 23455666664 48999999999873 245555544433 67778888777777776655432100 2344
Q ss_pred hhhHHHhcCCCch
Q 003387 324 GGPLRATYKGRPF 336 (824)
Q Consensus 324 ~~~i~~~c~GlPl 336 (824)
+.+-.+|.=..|+
T Consensus 233 ~~~yLeKiiq~~~ 245 (325)
T PF07693_consen 233 GREYLEKIIQVPF 245 (325)
T ss_pred HHHHHHhhcCeEE
Confidence 5555555544444
No 198
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.38 E-value=0.023 Score=55.10 Aligned_cols=37 Identities=22% Similarity=0.227 Sum_probs=30.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEE
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIT 216 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~ 216 (824)
...+|.++|+.|+||||+|+.+++ +....+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 356999999999999999999998 6666676666665
No 199
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.37 E-value=0.018 Score=56.06 Aligned_cols=123 Identities=14% Similarity=0.180 Sum_probs=67.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEEC-CCCCCCCHHHHH------HHHHHHhCCCCCccc-ccccCH
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITE-PYSNEYDADQIL------DIVIKFLMPSSRLSE-IMDKNY 250 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~-~vs~~~~~~~~~------~~i~~~l~~~~~~~~-~~~~~~ 250 (824)
-.+++|+|..|.|||||++.+..- . ......+++.. ++.. .+..+.. -++++.++....... ....+.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~--~-~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGL--L-KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--C-CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 469999999999999999999983 2 33445555531 1322 2222221 124555544211000 112222
Q ss_pred -HHHHHHHHHhcCCCeEEEEEecCCCh---hhHHHHHhhCCCC-CC-CcEEEEEechHHHH
Q 003387 251 -EMKKIILHEYLMTKRYLIVIDDVWSI---DMWDVIQEILPDN-QN-GSRVLITLTDIRII 305 (824)
Q Consensus 251 -~~~~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~~~~~-~~-gs~ilvTtR~~~v~ 305 (824)
+...-.|.+.+....-+++||+.-.. ...+.+...+... .. |..||++|.+....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 33334566667778889999998643 2233333333221 12 56788888776544
No 200
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.37 E-value=0.019 Score=69.82 Aligned_cols=133 Identities=15% Similarity=0.230 Sum_probs=74.4
Q ss_pred CCceechhhHHHHHHHHHcC-------CCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHH
Q 003387 156 RDTVGLDDRMEELLDLLIEG-------PPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQI 228 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~ 228 (824)
..++|.+..++.+.+.+... .....++.++|+.|+|||++|+.+.. .....-...+.++ .+...+...+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~--~l~~~~~~~i~~d--~s~~~~~~~~ 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAE--FLFDDEDAMVRID--MSEYMEKHSV 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH--HhcCCCCcEEEEe--chhhcccchH
Confidence 46899999999999998752 12256788999999999999999987 3322222334444 4432221111
Q ss_pred HHHHHHHhCCCCCcccccccCHHHHHHHHHHhcCCCeEEEEEecCCCh--hhHHHHHhhCCCC----C-------CCcEE
Q 003387 229 LDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWSI--DMWDVIQEILPDN----Q-------NGSRV 295 (824)
Q Consensus 229 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~----~-------~gs~i 295 (824)
..-++...+. ........+...+++ ....+|+||++... +.++.+...+..+ + ..+-|
T Consensus 641 ----~~l~g~~~g~--~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~ii 711 (852)
T TIGR03346 641 ----ARLIGAPPGY--VGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVI 711 (852)
T ss_pred ----HHhcCCCCCc--cCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEE
Confidence 1112211110 111111222233222 23348999999865 4667666665432 1 23447
Q ss_pred EEEech
Q 003387 296 LITLTD 301 (824)
Q Consensus 296 lvTtR~ 301 (824)
|+||..
T Consensus 712 I~TSn~ 717 (852)
T TIGR03346 712 IMTSNL 717 (852)
T ss_pred EEeCCc
Confidence 777654
No 201
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.37 E-value=0.026 Score=67.44 Aligned_cols=45 Identities=20% Similarity=0.114 Sum_probs=37.9
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+++|.+..++.|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr 59 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILAR 59 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999988654 234578999999999999998866
No 202
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.011 Score=66.43 Aligned_cols=68 Identities=21% Similarity=0.313 Sum_probs=52.1
Q ss_pred CCCCceechhhHHHHHHHHHcC----CCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHH
Q 003387 154 KSRDTVGLDDRMEELLDLLIEG----PPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQI 228 (824)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~ 228 (824)
-+++-+|+++-+++|++++.-+ .-+-++++.+|++|||||.+|+.|.. .....|-. +. |..-.|+.+|
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkFfR---fS--vGG~tDvAeI 480 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKFFR---FS--VGGMTDVAEI 480 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCceEE---Ee--ccccccHHhh
Confidence 3456789999999999999753 44578999999999999999999998 66666632 23 5555555553
No 203
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.36 E-value=0.007 Score=72.19 Aligned_cols=53 Identities=15% Similarity=0.283 Sum_probs=42.4
Q ss_pred CCCceechhhHHHHHHHHHc----CCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCC
Q 003387 155 SRDTVGLDDRMEELLDLLIE----GPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYF 209 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F 209 (824)
+.+.+|.+.-+++|+++|.. +.....++.++|++|+||||+|+.+.. .....|
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~ 377 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKY 377 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCE
Confidence 35689999999999998874 223456899999999999999999998 454444
No 204
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=0.0006 Score=67.69 Aligned_cols=99 Identities=21% Similarity=0.229 Sum_probs=77.1
Q ss_pred CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhh-hhcCCCc
Q 003387 492 DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSL-LSNLLNL 570 (824)
Q Consensus 492 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i-~~~L~~L 570 (824)
..+++-|.++++...+ -.++.+|+.|.||.|+-|.|+++- .+..|++|+.|.|+.|.|..+.+-. +.+|++|
T Consensus 18 l~~vkKLNcwg~~L~D------Isic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD------ISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCCCccH------HHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 3466777888887652 367899999999999999998774 4788999999999999998776522 3799999
Q ss_pred cEeecCCc-cccccch-----hhhccccCceec
Q 003387 571 YTLDMPFS-YIDHTAD-----EFWKMNKLRHLN 597 (824)
Q Consensus 571 ~~L~L~~~-~l~~lp~-----~i~~L~~L~~L~ 597 (824)
++|.|..| .-..-+. .+.-||||+.||
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99999887 3333322 266788999885
No 205
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.32 E-value=0.05 Score=56.24 Aligned_cols=132 Identities=11% Similarity=0.012 Sum_probs=73.8
Q ss_pred hHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEEC-CCCCCCCHHHHHHHHHHHhCCC--C
Q 003387 164 RMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITE-PYSNEYDADQILDIVIKFLMPS--S 240 (824)
Q Consensus 164 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~-~vs~~~~~~~~~~~i~~~l~~~--~ 240 (824)
..+.++..|... .+..-++|+|..|.|||||.+.+.. .+. .....+++.. .|...-+. .+++.....- .
T Consensus 97 ~~~~~l~~l~~~-~~~~~~~i~g~~g~GKttl~~~l~~--~~~-~~~G~i~~~g~~v~~~d~~----~ei~~~~~~~~q~ 168 (270)
T TIGR02858 97 AADKLLPYLVRN-NRVLNTLIISPPQCGKTTLLRDLAR--ILS-TGISQLGLRGKKVGIVDER----SEIAGCVNGVPQH 168 (270)
T ss_pred cHHHHHHHHHhC-CCeeEEEEEcCCCCCHHHHHHHHhC--ccC-CCCceEEECCEEeecchhH----HHHHHHhcccccc
Confidence 445555555533 2367899999999999999999998 333 2234444430 12211111 2333332221 0
Q ss_pred Cc-ccccccCHHHHHHHHHHhcC-CCeEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEechHHHHh
Q 003387 241 RL-SEIMDKNYEMKKIILHEYLM-TKRYLIVIDDVWSIDMWDVIQEILPDNQNGSRVLITLTDIRIII 306 (824)
Q Consensus 241 ~~-~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~ 306 (824)
.. ...+..+......-+...+. ...=+|++|.+-..+.+..+...+. .|..||+||-+..+..
T Consensus 169 ~~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 169 DVGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred cccccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 00 00111111111222333333 4788999999988777777766553 4778999999877654
No 206
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.26 E-value=0.012 Score=65.79 Aligned_cols=123 Identities=14% Similarity=0.228 Sum_probs=66.1
Q ss_pred Cceechhh--HHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCC--ceeEEEECCCCCCCCHHHHHHHH
Q 003387 157 DTVGLDDR--MEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYF--DCHAWITEPYSNEYDADQILDIV 232 (824)
Q Consensus 157 ~~vGr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F--~~~~wv~~~vs~~~~~~~~~~~i 232 (824)
-++|-... ......+.........-+.|+|..|+|||+|++++.+ .+.... ..+++++ ..++...+
T Consensus 117 Fv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv~--------~~~f~~~~ 186 (450)
T PRK14087 117 FVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYMS--------GDEFARKA 186 (450)
T ss_pred ccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEE--------HHHHHHHH
Confidence 35565443 2223333322222345688999999999999999998 443322 2344554 34566666
Q ss_pred HHHhCCCCCcccccccCHHHHHHHHHHhcCCCeEEEEEecCCCh---hhH-HHHHhhCCC-CCCCcEEEEEech
Q 003387 233 IKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWSI---DMW-DVIQEILPD-NQNGSRVLITLTD 301 (824)
Q Consensus 233 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~---~~~-~~l~~~~~~-~~~gs~ilvTtR~ 301 (824)
...+... ......+++.++ +.-+||+||+... ..+ +.+...+.. ...|..||+|+..
T Consensus 187 ~~~l~~~-----------~~~~~~~~~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~ 248 (450)
T PRK14087 187 VDILQKT-----------HKEIEQFKNEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDK 248 (450)
T ss_pred HHHHHHh-----------hhHHHHHHHHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCC
Confidence 6665421 011233444444 3347889999643 222 233332221 1234578888653
No 207
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.24 E-value=0.032 Score=63.92 Aligned_cols=45 Identities=16% Similarity=0.066 Sum_probs=36.8
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
++++|-+..++.|.+.+..+. -...+-++|+.|+||||+|+.+.+
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk 60 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAK 60 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 578898888888888887643 245777899999999999998887
No 208
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.20 E-value=0.0024 Score=63.49 Aligned_cols=87 Identities=17% Similarity=0.190 Sum_probs=56.0
Q ss_pred hhhcccCcccEEEeeCccCccCCccCCCCCcceEEeecCC--CCC-ccChhhhhcCCCccEeecCCccccc---cchhhh
Q 003387 515 KFCGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIP--SLN-SLPSSLLSNLLNLYTLDMPFSYIDH---TADEFW 588 (824)
Q Consensus 515 ~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~--~i~-~lp~~i~~~L~~L~~L~L~~~~l~~---lp~~i~ 588 (824)
.....+..|..|++.++.++++- .+..|++|++|.++.| .+. .++..+ .++++|++|++++|+++. ++. +.
T Consensus 37 gl~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~p-l~ 113 (260)
T KOG2739|consen 37 GLTDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRP-LK 113 (260)
T ss_pred cccccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccch-hh
Confidence 34445556666666666554332 2445778888888887 433 566655 667888888888886553 222 56
Q ss_pred ccccCceecCCCccCC
Q 003387 589 KMNKLRHLNFGSITLP 604 (824)
Q Consensus 589 ~L~~L~~L~L~~~~~~ 604 (824)
.+.+|..|++..|..+
T Consensus 114 ~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVT 129 (260)
T ss_pred hhcchhhhhcccCCcc
Confidence 6777778877777655
No 209
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.20 E-value=0.023 Score=57.23 Aligned_cols=54 Identities=20% Similarity=0.044 Sum_probs=38.0
Q ss_pred HHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCC
Q 003387 167 ELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYD 224 (824)
Q Consensus 167 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~ 224 (824)
.+-++|..+=..-.++.|.|.+|+||||+|.++.. .....=..++|++ ....++
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~--~~~~~g~~v~yi~--~e~~~~ 60 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAV--ETAGQGKKVAYID--TEGLSS 60 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEE--CCCCCH
Confidence 34455544444578999999999999999999876 3333334678888 655554
No 210
>PRK07667 uridine kinase; Provisional
Probab=96.17 E-value=0.0061 Score=60.07 Aligned_cols=37 Identities=16% Similarity=0.198 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 165 MEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 165 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+.|.+.+....+...+|+|.|.+|.||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4667777776666679999999999999999999987
No 211
>PRK06696 uridine kinase; Validated
Probab=96.15 E-value=0.0059 Score=61.73 Aligned_cols=42 Identities=24% Similarity=0.208 Sum_probs=34.6
Q ss_pred echhhHHHHHHHHHc-CCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 160 GLDDRMEELLDLLIE-GPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 160 Gr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.|++-+++|.+.+.. ......+|+|.|.+|+||||+|+.+.+
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 356677788888765 344689999999999999999999988
No 212
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.14 E-value=0.019 Score=60.86 Aligned_cols=106 Identities=13% Similarity=0.105 Sum_probs=62.7
Q ss_pred HHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCcccc----CCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCC
Q 003387 166 EELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVK----HYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSR 241 (824)
Q Consensus 166 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~----~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~ 241 (824)
..+-++|..+=..-+++-|+|.+|+|||+|+..++-..... ..=..++||+ ....|+.+++.+ ++++++....
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId--tE~~f~~eRi~~-~a~~~g~d~~ 159 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID--TEGTFRPDRIRA-IAERFGVDPD 159 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE--cCCCCCHHHHHH-HHHHcCCChH
Confidence 33445565554456899999999999999998765322221 1124789999 888889888764 5666654321
Q ss_pred c-----ccccccCHHHHH---HHHHHhcC-CCeEEEEEecCC
Q 003387 242 L-----SEIMDKNYEMKK---IILHEYLM-TKRYLIVIDDVW 274 (824)
Q Consensus 242 ~-----~~~~~~~~~~~~---~~l~~~L~-~kr~LlVlDdv~ 274 (824)
. .-....+.++.. ..+...+. ++--|||+|-+-
T Consensus 160 ~~l~~i~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 160 AVLDNILYARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HhcCcEEEecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 0 001112233333 33333343 344478888874
No 213
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.11 E-value=0.04 Score=53.51 Aligned_cols=120 Identities=8% Similarity=-0.013 Sum_probs=60.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCccc----------cccc
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSE----------IMDK 248 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~----------~~~~ 248 (824)
-.+++|+|..|.|||||++.+..-. ..-...+++. -. ++......+-+.++--...+. ....
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~--g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~L 99 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDL---KPQQGEITLD--GV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRF 99 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC---CCCCCEEEEC--CE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccC
Confidence 4589999999999999999998842 1122334433 10 111111111111110000000 0111
Q ss_pred C-HHHHHHHHHHhcCCCeEEEEEecCCChh---hHHHHHhhCCCCCCCcEEEEEechHHHHh
Q 003387 249 N-YEMKKIILHEYLMTKRYLIVIDDVWSID---MWDVIQEILPDNQNGSRVLITLTDIRIII 306 (824)
Q Consensus 249 ~-~~~~~~~l~~~L~~kr~LlVlDdv~~~~---~~~~l~~~~~~~~~gs~ilvTtR~~~v~~ 306 (824)
+ -+...-.|.+.+..++=+++||+....- ..+.+...+....+|..||++|.+.....
T Consensus 100 S~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 1 1233345666666777889999987542 22222222221123667888888776554
No 214
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.11 E-value=0.051 Score=63.17 Aligned_cols=46 Identities=15% Similarity=0.089 Sum_probs=38.0
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-++++|-+..++.+.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk 61 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAK 61 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999998764 235578999999999999987655
No 215
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.10 E-value=0.012 Score=69.69 Aligned_cols=115 Identities=10% Similarity=0.179 Sum_probs=65.6
Q ss_pred CCceechhhHHHHHHHHHcC-------CCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHH
Q 003387 156 RDTVGLDDRMEELLDLLIEG-------PPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQI 228 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~ 228 (824)
..++|-++.++.|.+.+... ......+-++|+.|+|||++|+.+.. .... ..+.++ .+...+..
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~--~l~~---~~i~id--~se~~~~~-- 528 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK--ALGI---ELLRFD--MSEYMERH-- 528 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHH--HhCC---CcEEee--chhhcccc--
Confidence 35899999999999988731 22356789999999999999999977 3322 233444 44322111
Q ss_pred HHHHHHHhCCCCCcccccccCHHHHHHHHHHhcCC-CeEEEEEecCCCh--hhHHHHHhhCC
Q 003387 229 LDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMT-KRYLIVIDDVWSI--DMWDVIQEILP 287 (824)
Q Consensus 229 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~~--~~~~~l~~~~~ 287 (824)
.+.+-++...+ ....+ ....+.+.++. ..-+|+||++... +.++.+...+.
T Consensus 529 --~~~~LiG~~~g---yvg~~---~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 529 --TVSRLIGAPPG---YVGFD---QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred --cHHHHcCCCCC---ccccc---ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 11112222111 00001 01123333333 4469999999875 45666665554
No 216
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.10 E-value=0.059 Score=60.96 Aligned_cols=45 Identities=16% Similarity=0.001 Sum_probs=37.3
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
++++|-+..++.+...+..+. -..+.-++|..|+||||+|+.+.+
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk 58 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFAR 58 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHH
Confidence 579999999999999987664 345668999999999999997665
No 217
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.09 E-value=0.0063 Score=58.01 Aligned_cols=11 Identities=27% Similarity=0.365 Sum_probs=4.1
Q ss_pred CceEEEEEccc
Q 003387 692 SLTHLSFSNTD 702 (824)
Q Consensus 692 ~L~~L~L~~~~ 702 (824)
.|.+|.|.+|.
T Consensus 65 rL~tLll~nNr 75 (233)
T KOG1644|consen 65 RLHTLLLNNNR 75 (233)
T ss_pred ccceEEecCCc
Confidence 33333333333
No 218
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.08 E-value=0.017 Score=60.99 Aligned_cols=100 Identities=20% Similarity=0.059 Sum_probs=62.9
Q ss_pred HHHHHHHH-cCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCC-cc
Q 003387 166 EELLDLLI-EGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSR-LS 243 (824)
Q Consensus 166 ~~l~~~L~-~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~-~~ 243 (824)
..|-.+|. .+=..-+++-|+|.+|+||||||.++.. .....-..++||+ ..+.++.. .+++++...+ ..
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~--~~~~~g~~v~yId--~E~~~~~~-----~a~~lGvd~~~l~ 111 (321)
T TIGR02012 41 LSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIA--EAQKAGGTAAFID--AEHALDPV-----YARKLGVDIDNLL 111 (321)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEc--ccchhHHH-----HHHHcCCCHHHeE
Confidence 33445554 4444568999999999999999988776 3334445678998 66666653 3455544211 00
Q ss_pred cccccCHHHHHHHHHHhcC-CCeEEEEEecCC
Q 003387 244 EIMDKNYEMKKIILHEYLM-TKRYLIVIDDVW 274 (824)
Q Consensus 244 ~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~ 274 (824)
..+..+.++....+...++ +.--+||+|-|-
T Consensus 112 v~~p~~~eq~l~~~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 112 VSQPDTGEQALEIAETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred EecCCCHHHHHHHHHHHhhccCCcEEEEcchh
Confidence 0223345566666666554 456689999985
No 219
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.08 E-value=0.048 Score=63.16 Aligned_cols=46 Identities=17% Similarity=0.127 Sum_probs=38.2
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-++++|.+.-++.|.+.+..+. -...+-++|..|+||||+|+.+.+
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak 60 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAK 60 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999987754 235567899999999999988876
No 220
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.06 E-value=0.011 Score=65.76 Aligned_cols=99 Identities=9% Similarity=0.138 Sum_probs=54.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHHHH
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILH 258 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 258 (824)
..-+.|+|..|+|||+|++++.+ ++...-..+++++ ..++...+...+... ....++
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~--~l~~~~~~v~yi~--------~~~f~~~~~~~l~~~-------------~~~~f~ 197 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVH--ALRESGGKILYVR--------SELFTEHLVSAIRSG-------------EMQRFR 197 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHH--HHHHcCCCEEEee--------HHHHHHHHHHHHhcc-------------hHHHHH
Confidence 45688999999999999999999 4443333345554 234444555554321 012334
Q ss_pred HhcCCCeEEEEEecCCChhh----HHHHHhhCCC-CCCCcEEEEEech
Q 003387 259 EYLMTKRYLIVIDDVWSIDM----WDVIQEILPD-NQNGSRVLITLTD 301 (824)
Q Consensus 259 ~~L~~kr~LlVlDdv~~~~~----~~~l~~~~~~-~~~gs~ilvTtR~ 301 (824)
+.++. .-+|++||+..... .+.+...+.. ...|..||+||..
T Consensus 198 ~~~~~-~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~ 244 (445)
T PRK12422 198 QFYRN-VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTC 244 (445)
T ss_pred HHccc-CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCC
Confidence 44433 34788899865321 1222222211 1135578888754
No 221
>CHL00176 ftsH cell division protein; Validated
Probab=96.06 E-value=0.013 Score=68.15 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=35.3
Q ss_pred CCCCceechhhHHHHHHHH---HcCC-------CCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 154 KSRDTVGLDDRMEELLDLL---IEGP-------PQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~L---~~~~-------~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.-.++.|.++.++++.+.+ .... ...+-|.++|++|.|||++|+++.+
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~ 238 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAG 238 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3467889887776665554 3221 1245688999999999999999988
No 222
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.04 E-value=0.029 Score=59.96 Aligned_cols=68 Identities=16% Similarity=0.125 Sum_probs=47.5
Q ss_pred HHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCcccc----CCCceeEEEECCCCCCCCHHHHHHHHHHHhCC
Q 003387 168 LLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVK----HYFDCHAWITEPYSNEYDADQILDIVIKFLMP 238 (824)
Q Consensus 168 l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~----~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~ 238 (824)
|-++|..+=..-.++=|+|.+|+|||+|+..++-..... ..-..++||+ ....|+..++.+ +++.++.
T Consensus 115 LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId--TE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 115 LDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID--TEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred HHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEE--cCCCCCHHHHHH-HHHHcCC
Confidence 444555554456888999999999999998775322221 1224789999 888899888755 5666654
No 223
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.02 E-value=0.018 Score=55.01 Aligned_cols=115 Identities=10% Similarity=0.018 Sum_probs=62.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEEC-CCCCCCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHHH
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITE-PYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIIL 257 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~-~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 257 (824)
-.+++|+|..|.|||||.+.+..- . ......+++.. ++.. .+..+.. .+.++.- .+-..-+...-.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~--~-~~~~G~v~~~g~~~~~-~~~~~~~---~~~i~~~-----~qLS~G~~qrl~l 93 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGL--Y-KPDSGEILVDGKEVSF-ASPRDAR---RAGIAMV-----YQLSVGERQMVEI 93 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--C-CCCCeEEEECCEECCc-CCHHHHH---hcCeEEE-----EecCHHHHHHHHH
Confidence 458999999999999999999983 2 33455666641 1221 1111111 1111110 0111123334456
Q ss_pred HHhcCCCeEEEEEecCCCh---hhHHHHHhhCCC-CCCCcEEEEEechHHHH
Q 003387 258 HEYLMTKRYLIVIDDVWSI---DMWDVIQEILPD-NQNGSRVLITLTDIRII 305 (824)
Q Consensus 258 ~~~L~~kr~LlVlDdv~~~---~~~~~l~~~~~~-~~~gs~ilvTtR~~~v~ 305 (824)
.+.+-.+.-++++|+.-.. ...+.+...+.. ...|..||++|.+...+
T Consensus 94 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 94 ARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred HHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 6666677788899998654 223333333321 12366788888876543
No 224
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.01 E-value=0.044 Score=61.43 Aligned_cols=46 Identities=17% Similarity=0.059 Sum_probs=38.0
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-++++|.+..++.+.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk 61 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAK 61 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHH
Confidence 3588999999999999987654 235677899999999999988765
No 225
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.00 E-value=0.021 Score=65.01 Aligned_cols=120 Identities=9% Similarity=0.187 Sum_probs=63.4
Q ss_pred ceechhh--HHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCC--ceeEEEECCCCCCCCHHHHHHHHH
Q 003387 158 TVGLDDR--MEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYF--DCHAWITEPYSNEYDADQILDIVI 233 (824)
Q Consensus 158 ~vGr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F--~~~~wv~~~vs~~~~~~~~~~~i~ 233 (824)
++|-... ......+..........+.|+|..|+|||.|++++.+ .....+ ..+++++ ..++..++.
T Consensus 291 vvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Yit--------aeef~~el~ 360 (617)
T PRK14086 291 VIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRYVS--------SEEFTNEFI 360 (617)
T ss_pred cCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEee--------HHHHHHHHH
Confidence 4465443 2233333333222234589999999999999999999 554433 2344554 344444554
Q ss_pred HHhCCCCCcccccccCHHHHHHHHHHhcCCCeEEEEEecCCCh---hhHH-HHHhhCCC-CCCCcEEEEEech
Q 003387 234 KFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWSI---DMWD-VIQEILPD-NQNGSRVLITLTD 301 (824)
Q Consensus 234 ~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~---~~~~-~l~~~~~~-~~~gs~ilvTtR~ 301 (824)
..+... . ...+++.++. -=+|||||+... ..|+ .+...+.. ...|..|||||+.
T Consensus 361 ~al~~~---------~----~~~f~~~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~ 419 (617)
T PRK14086 361 NSIRDG---------K----GDSFRRRYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDR 419 (617)
T ss_pred HHHHhc---------c----HHHHHHHhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 443221 1 1223333332 247889999754 2232 22222221 1235568888875
No 226
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.00 E-value=0.092 Score=49.99 Aligned_cols=120 Identities=18% Similarity=0.190 Sum_probs=68.7
Q ss_pred echhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC----Ccccc--------------CCCceeEEEECCCCC
Q 003387 160 GLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN----SSYVK--------------HYFDCHAWITEPYSN 221 (824)
Q Consensus 160 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~----~~~~~--------------~~F~~~~wv~~~vs~ 221 (824)
|-++..+.+.+.+..+. -...+-++|..|+||+|+|..+.+ ..... .......|+. -..
T Consensus 1 gq~~~~~~L~~~~~~~~-l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~--~~~ 77 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIK--PDK 77 (162)
T ss_dssp S-HHHHHHHHHHHHCTC---SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEE--TTT
T ss_pred CcHHHHHHHHHHHHcCC-cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEe--ccc
Confidence 44556666666665553 345678999999999999977654 21110 1222334444 221
Q ss_pred ---CCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHhcCCCeEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEE
Q 003387 222 ---EYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWSI--DMWDVIQEILPDNQNGSRVL 296 (824)
Q Consensus 222 ---~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~il 296 (824)
...++++- ++...+..... .+++=.+|+||+... +.++.+...+..-..++++|
T Consensus 78 ~~~~i~i~~ir-~i~~~~~~~~~--------------------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 78 KKKSIKIDQIR-EIIEFLSLSPS--------------------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp SSSSBSHHHHH-HHHHHCTSS-T--------------------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred ccchhhHHHHH-HHHHHHHHHHh--------------------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 23333322 33333322111 135668899999864 56777777776666789999
Q ss_pred EEechHH
Q 003387 297 ITLTDIR 303 (824)
Q Consensus 297 vTtR~~~ 303 (824)
++|++.+
T Consensus 137 L~t~~~~ 143 (162)
T PF13177_consen 137 LITNNPS 143 (162)
T ss_dssp EEES-GG
T ss_pred EEECChH
Confidence 9988764
No 227
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.99 E-value=0.062 Score=57.85 Aligned_cols=121 Identities=14% Similarity=0.123 Sum_probs=75.5
Q ss_pred CceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccC---------------------CCceeEEE
Q 003387 157 DTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKH---------------------YFDCHAWI 215 (824)
Q Consensus 157 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~---------------------~F~~~~wv 215 (824)
.++|-+....++..+..........+-++|+.|+||||+|..+.+. +.. ....+..+
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel 79 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKE--LLCENPTGLLPCGHCRSCKLIPAGNHPDFLEL 79 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHH--HhCCCcccCCcccchhhhhHHhhcCCCceEEe
Confidence 4677788888888888754433445899999999999999888773 211 11234444
Q ss_pred ECCCCCCCC---HHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHhcCCCeEEEEEecCCChh--hHHHHHhhCCCCC
Q 003387 216 TEPYSNEYD---ADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWSID--MWDVIQEILPDNQ 290 (824)
Q Consensus 216 ~~~vs~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~ 290 (824)
. .|.... ..+..+++.+....... .++.-++++|+++... .-+.+...+....
T Consensus 80 ~--~s~~~~~~i~~~~vr~~~~~~~~~~~--------------------~~~~kviiidead~mt~~A~nallk~lEep~ 137 (325)
T COG0470 80 N--PSDLRKIDIIVEQVRELAEFLSESPL--------------------EGGYKVVIIDEADKLTEDAANALLKTLEEPP 137 (325)
T ss_pred c--ccccCCCcchHHHHHHHHHHhccCCC--------------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCC
Confidence 4 343333 23444444444433210 3567789999998753 4555555555555
Q ss_pred CCcEEEEEech
Q 003387 291 NGSRVLITLTD 301 (824)
Q Consensus 291 ~gs~ilvTtR~ 301 (824)
..+++|++|..
T Consensus 138 ~~~~~il~~n~ 148 (325)
T COG0470 138 KNTRFILITND 148 (325)
T ss_pred CCeEEEEEcCC
Confidence 67778877763
No 228
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.95 E-value=0.019 Score=60.68 Aligned_cols=99 Identities=22% Similarity=0.082 Sum_probs=62.3
Q ss_pred HHHHHHH-cCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCC-ccc
Q 003387 167 ELLDLLI-EGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSR-LSE 244 (824)
Q Consensus 167 ~l~~~L~-~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~-~~~ 244 (824)
.|-.+|. .+=+.-+++-|+|++|+||||||.+++- .....-..++||+ ..+.++.. .+++++...+ ..-
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~--~~~~~g~~~vyId--~E~~~~~~-----~a~~lGvd~~~l~v 112 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIA--EAQKLGGTVAFID--AEHALDPV-----YAKKLGVDLDNLLI 112 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEEC--ccccHHHH-----HHHHcCCCHHHhee
Confidence 3445554 4434567899999999999999998776 3334445788998 77766653 3444443211 000
Q ss_pred ccccCHHHHHHHHHHhcCC-CeEEEEEecCC
Q 003387 245 IMDKNYEMKKIILHEYLMT-KRYLIVIDDVW 274 (824)
Q Consensus 245 ~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~ 274 (824)
.+..+.++....+...++. .--+||+|-|-
T Consensus 113 ~~p~~~eq~l~i~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 113 SQPDTGEQALEIADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred cCCCCHHHHHHHHHHHHhccCCCEEEEcchH
Confidence 2233456666666665543 56689999975
No 229
>PRK09354 recA recombinase A; Provisional
Probab=95.95 E-value=0.023 Score=60.45 Aligned_cols=100 Identities=23% Similarity=0.066 Sum_probs=64.5
Q ss_pred HHHHHHHH-cCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCC-cc
Q 003387 166 EELLDLLI-EGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSR-LS 243 (824)
Q Consensus 166 ~~l~~~L~-~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~-~~ 243 (824)
..|-.+|. .+=..-+++-|+|+.|+||||||.++.. .....=..++||+ .-..++.. .+++++...+ ..
T Consensus 46 ~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~--~~~~~G~~~~yId--~E~s~~~~-----~a~~lGvdld~ll 116 (349)
T PRK09354 46 LALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIA--EAQKAGGTAAFID--AEHALDPV-----YAKKLGVDIDNLL 116 (349)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEC--CccchHHH-----HHHHcCCCHHHeE
Confidence 34555565 4444568999999999999999998876 3334446788999 77777753 4555544211 00
Q ss_pred cccccCHHHHHHHHHHhcC-CCeEEEEEecCC
Q 003387 244 EIMDKNYEMKKIILHEYLM-TKRYLIVIDDVW 274 (824)
Q Consensus 244 ~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~ 274 (824)
..+..+.++....+...++ ++--+||+|-|-
T Consensus 117 i~qp~~~Eq~l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 117 VSQPDTGEQALEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred EecCCCHHHHHHHHHHHhhcCCCCEEEEeChh
Confidence 0223345566666666654 356699999985
No 230
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.94 E-value=0.017 Score=56.66 Aligned_cols=128 Identities=17% Similarity=0.149 Sum_probs=64.1
Q ss_pred echhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCH----HH-------H
Q 003387 160 GLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDA----DQ-------I 228 (824)
Q Consensus 160 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~----~~-------~ 228 (824)
.+..+....++.|.. ..++.+.|++|.|||.||.+..-+.-..+.|+..+++.-.|.-.-++ .+ .
T Consensus 4 p~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~ 79 (205)
T PF02562_consen 4 PKNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPY 79 (205)
T ss_dssp --SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TT
T ss_pred CCCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHH
Confidence 456677778888873 56999999999999999988766533457888888875222211111 01 1
Q ss_pred HHHHHHHhCCCCCcccccccCHHHHHH------HHHHhcCCC---eEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEE
Q 003387 229 LDIVIKFLMPSSRLSEIMDKNYEMKKI------ILHEYLMTK---RYLIVIDDVWSI--DMWDVIQEILPDNQNGSRVLI 297 (824)
Q Consensus 229 ~~~i~~~l~~~~~~~~~~~~~~~~~~~------~l~~~L~~k---r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilv 297 (824)
+.-+...+..- ......+.+.+ .--.+++|+ ..+||+|++.+. .++..+.. -.+.||||++
T Consensus 80 ~~p~~d~l~~~-----~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilT---R~g~~skii~ 151 (205)
T PF02562_consen 80 LRPIYDALEEL-----FGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILT---RIGEGSKIII 151 (205)
T ss_dssp THHHHHHHTTT-----S-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHT---TB-TT-EEEE
T ss_pred HHHHHHHHHHH-----hChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHc---ccCCCcEEEE
Confidence 11122222110 01111111111 012355664 469999999765 46666654 3467999997
Q ss_pred Ee
Q 003387 298 TL 299 (824)
Q Consensus 298 Tt 299 (824)
+=
T Consensus 152 ~G 153 (205)
T PF02562_consen 152 TG 153 (205)
T ss_dssp EE
T ss_pred ec
Confidence 74
No 231
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.94 E-value=0.0068 Score=67.68 Aligned_cols=46 Identities=13% Similarity=0.320 Sum_probs=39.9
Q ss_pred CCceechhhHHHHHHHHHc----CCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIE----GPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+++|.++.+++|++.|.. -...-+++.++|++|+||||||+.+.+
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 3689999999999999943 234568999999999999999999988
No 232
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.93 E-value=0.02 Score=60.81 Aligned_cols=71 Identities=14% Similarity=0.058 Sum_probs=48.0
Q ss_pred HHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccC----CCceeEEEECCCCCCCCHHHHHHHHHHHhCC
Q 003387 165 MEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKH----YFDCHAWITEPYSNEYDADQILDIVIKFLMP 238 (824)
Q Consensus 165 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~----~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~ 238 (824)
.+.+-++|..+=..-.++.|+|.+|+|||||+..++....... .-..++|++ ....|+..++ .++++.++.
T Consensus 82 ~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyId--tE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 82 SKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYID--TEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEE--CCCCCCHHHH-HHHHHHcCC
Confidence 3445566666645678999999999999999988865322211 123679999 7777777764 445555543
No 233
>PRK08233 hypothetical protein; Provisional
Probab=95.93 E-value=0.023 Score=55.34 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 57999999999999999999987
No 234
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.89 E-value=0.016 Score=56.76 Aligned_cols=80 Identities=15% Similarity=0.008 Sum_probs=44.5
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHH
Q 003387 177 PQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKII 256 (824)
Q Consensus 177 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 256 (824)
..+.+|||-|.+|.||||+|+.+++ .++..+ ++-++ -..-+. ..=.....+.....-+. ....+.+-+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~--~~~I~--~D~YYk-~~~~~~~~~~~~~n~d~--p~A~D~dLl~~~ 76 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE--QLGVEK--VVVIS--LDDYYK-DQSHLPFEERNKINYDH--PEAFDLDLLIEH 76 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH--HhCcCc--ceEee--cccccc-chhhcCHhhcCCcCccC--hhhhcHHHHHHH
Confidence 3578999999999999999999999 555442 11222 011111 00011111111111111 244566777777
Q ss_pred HHHhcCCCe
Q 003387 257 LHEYLMTKR 265 (824)
Q Consensus 257 l~~~L~~kr 265 (824)
|...++++.
T Consensus 77 L~~L~~g~~ 85 (218)
T COG0572 77 LKDLKQGKP 85 (218)
T ss_pred HHHHHcCCc
Confidence 777777776
No 235
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.88 E-value=0.12 Score=57.26 Aligned_cols=38 Identities=24% Similarity=0.080 Sum_probs=26.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEE
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIT 216 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~ 216 (824)
-+++.++|++|+||||++..+.........-..+..|+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 46999999999999999888766211012234566676
No 236
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.88 E-value=0.1 Score=56.15 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
+.++|+++|.+|+||||++..+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 458999999999999999999976
No 237
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.87 E-value=0.04 Score=58.95 Aligned_cols=71 Identities=13% Similarity=0.087 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccC----CCceeEEEECCCCCCCCHHHHHHHHHHHhCC
Q 003387 165 MEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKH----YFDCHAWITEPYSNEYDADQILDIVIKFLMP 238 (824)
Q Consensus 165 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~----~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~ 238 (824)
...+-++|..+=..-.++-|+|.+|+|||+||..++-...... .=..++||+ ....|+.+++. +|++.++.
T Consensus 109 ~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyId--tE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 109 SRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYID--TEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred CHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEE--CCCCccHHHHH-HHHHHcCC
Confidence 3445556666545578999999999999999987764322211 113689999 88888888764 55666654
No 238
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.87 E-value=0.014 Score=66.54 Aligned_cols=50 Identities=24% Similarity=0.350 Sum_probs=36.1
Q ss_pred CCCCCceechhhHHHHHHHHH---c-------CCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 003387 153 SKSRDTVGLDDRMEELLDLLI---E-------GPPQLSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 153 ~~~~~~vGr~~~~~~l~~~L~---~-------~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
+.-++++|.+..++++.+++. . +....+-+-++|++|.|||++|+.+.+.
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 344678898887776665443 2 1122445789999999999999999983
No 239
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.84 E-value=0.011 Score=60.91 Aligned_cols=105 Identities=20% Similarity=0.149 Sum_probs=59.8
Q ss_pred HHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccC----CCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCC-
Q 003387 167 ELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKH----YFDCHAWITEPYSNEYDADQILDIVIKFLMPSSR- 241 (824)
Q Consensus 167 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~----~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~- 241 (824)
.|-++|..+=..-.|.=|+|.+|+|||.||-.++-+..+.. .=..++|++ -...|...++. +|++.......
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyid--Te~~f~~~Rl~-~i~~~~~~~~~~ 102 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYID--TEGTFSPERLQ-QIAERFGLDPEE 102 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEE--SSSSS-HHHHH-HHHHHTTS-HHH
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEe--CCCCCCHHHHH-HHhhccccccch
Confidence 34455544423457999999999999999977654323322 124689999 88889988875 46665543210
Q ss_pred ----cccccccCHHHHHH---HHHHhc-CCCeEEEEEecCC
Q 003387 242 ----LSEIMDKNYEMKKI---ILHEYL-MTKRYLIVIDDVW 274 (824)
Q Consensus 242 ----~~~~~~~~~~~~~~---~l~~~L-~~kr~LlVlDdv~ 274 (824)
..-....+.+++.. .+...+ ..+=-|||+|.+-
T Consensus 103 ~l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 103 ILDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred hhhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchH
Confidence 00011123333333 333333 2344588888884
No 240
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.84 E-value=0.033 Score=61.24 Aligned_cols=93 Identities=13% Similarity=0.172 Sum_probs=52.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCC-------CCCcccccccCHH
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMP-------SSRLSEIMDKNYE 251 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~-------~~~~~~~~~~~~~ 251 (824)
-..++|+|..|+|||||++.+.... .....+++.. --+.-++.++....+..... ..+.+.....-..
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~li--Gergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~ 239 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALV--GERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAP 239 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeec--ccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHH
Confidence 4589999999999999999998732 2233455553 22333555554444443311 1111111111122
Q ss_pred HHHHHHHHhc--CCCeEEEEEecCCCh
Q 003387 252 MKKIILHEYL--MTKRYLIVIDDVWSI 276 (824)
Q Consensus 252 ~~~~~l~~~L--~~kr~LlVlDdv~~~ 276 (824)
..+..+.+++ +++.+|+++||+-..
T Consensus 240 ~~a~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 240 LTATAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchHHH
Confidence 2233444444 579999999999654
No 241
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.84 E-value=0.058 Score=62.85 Aligned_cols=46 Identities=22% Similarity=0.174 Sum_probs=37.9
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|-+..++.+.+.+..+. -...+-++|+.|+||||+|+.+.+
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk 62 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFAN 62 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence 3578999999999999987654 245567899999999999988866
No 242
>PRK06762 hypothetical protein; Provisional
Probab=95.83 E-value=0.031 Score=53.55 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..+|.|+|+.|+||||+|+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 243
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.83 E-value=0.043 Score=56.57 Aligned_cols=101 Identities=19% Similarity=0.094 Sum_probs=63.5
Q ss_pred HHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCC---CCCccc
Q 003387 168 LLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMP---SSRLSE 244 (824)
Q Consensus 168 l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~---~~~~~~ 244 (824)
+-+.|..+=..-+++=|+|+.|.||||+|-+++- ..+..-..++|++ .-+.+++..+.+--...+.. ..+
T Consensus 49 LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fID--tE~~l~p~r~~~l~~~~~d~l~v~~~--- 121 (279)
T COG0468 49 LDEALGGGLPRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFID--TEHALDPERAKQLGVDLLDNLLVSQP--- 121 (279)
T ss_pred HHHHhcCCcccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEe--CCCCCCHHHHHHHHHhhhcceeEecC---
Confidence 3444445445678999999999999999988877 3444555899999 88888888754432221221 111
Q ss_pred ccccCHHHHHHHHHHhcCCCeEEEEEecCCC
Q 003387 245 IMDKNYEMKKIILHEYLMTKRYLIVIDDVWS 275 (824)
Q Consensus 245 ~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 275 (824)
.......+.++.+.+....+=-|+|+|-|-.
T Consensus 122 ~~~e~q~~i~~~~~~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 122 DTGEQQLEIAEKLARSGAEKIDLLVVDSVAA 152 (279)
T ss_pred CCHHHHHHHHHHHHHhccCCCCEEEEecCcc
Confidence 1112223334444444444467999999854
No 244
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.82 E-value=0.046 Score=52.71 Aligned_cols=116 Identities=13% Similarity=0.174 Sum_probs=62.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC---ccccC---CCc--eeEEEECCCCCCCCHHHHHHHHHHHhCCCCC-ccc-cccc
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNS---SYVKH---YFD--CHAWITEPYSNEYDADQILDIVIKFLMPSSR-LSE-IMDK 248 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~---~~~~~---~F~--~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~-~~~-~~~~ 248 (824)
-.+++|+|..|.|||||.+.+..+ ..+.. .|. ...|+. + .+.++.++.... ... ....
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~----q--------~~~l~~~~L~~~~~~~~~~~L 88 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFID----Q--------LQFLIDVGLGYLTLGQKLSTL 88 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEh----H--------HHHHHHcCCCccccCCCcCcC
Confidence 468999999999999999998642 11111 111 122322 2 345566654321 000 1122
Q ss_pred CH-HHHHHHHHHhcCCC--eEEEEEecCCCh---hhHHHHHhhCCC-CCCCcEEEEEechHHHHh
Q 003387 249 NY-EMKKIILHEYLMTK--RYLIVIDDVWSI---DMWDVIQEILPD-NQNGSRVLITLTDIRIII 306 (824)
Q Consensus 249 ~~-~~~~~~l~~~L~~k--r~LlVlDdv~~~---~~~~~l~~~~~~-~~~gs~ilvTtR~~~v~~ 306 (824)
+. +...-.+.+.+..+ .=+++||+.-.. ...+.+...+.. ...|..||++|.+.+...
T Consensus 89 SgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 89 SGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred CHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 22 22334455556556 678888998653 223333333222 124667888888876654
No 245
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.81 E-value=0.019 Score=56.84 Aligned_cols=112 Identities=13% Similarity=0.130 Sum_probs=63.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHH
Q 003387 180 SVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHE 259 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 259 (824)
.+|.|+|..|.||||++..+.+ .+......++++-+ -...+.... ...++.+-. . ..+.......++.
T Consensus 2 GlilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t~e-~~~E~~~~~-~~~~i~q~~-------v-g~~~~~~~~~i~~ 69 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID--YINKNKTHHILTIE-DPIEFVHES-KRSLINQRE-------V-GLDTLSFENALKA 69 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEEEc-CCccccccC-ccceeeecc-------c-CCCccCHHHHHHH
Confidence 4789999999999999998877 44444445555431 110111000 000111100 0 1112334566777
Q ss_pred hcCCCeEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEechHHHHh
Q 003387 260 YLMTKRYLIVIDDVWSIDMWDVIQEILPDNQNGSRVLITLTDIRIII 306 (824)
Q Consensus 260 ~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~ 306 (824)
.|+...=.|++|++.+.+.+..+.... ..|..++.|+-..++..
T Consensus 70 aLr~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 70 ALRQDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAAK 113 (198)
T ss_pred HhcCCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence 777667799999998876655544332 23556777776665554
No 246
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.81 E-value=0.067 Score=55.48 Aligned_cols=56 Identities=18% Similarity=0.125 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHH
Q 003387 163 DRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQIL 229 (824)
Q Consensus 163 ~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~ 229 (824)
.-++++..++..+ .-|-+.|.+|+|||++|+.+.+ .... ..++++ .+...+..+++
T Consensus 9 ~l~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~--~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLIN--GDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEe--CCccCCHHHHh
Confidence 3344555555443 2456899999999999999987 3332 234555 55555555443
No 247
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.81 E-value=0.029 Score=60.01 Aligned_cols=69 Identities=17% Similarity=0.170 Sum_probs=46.8
Q ss_pred HHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCC----ceeEEEECCCCCCCCHHHHHHHHHHHhC
Q 003387 166 EELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYF----DCHAWITEPYSNEYDADQILDIVIKFLM 237 (824)
Q Consensus 166 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F----~~~~wv~~~vs~~~~~~~~~~~i~~~l~ 237 (824)
..+-++|..+=..-.++-|+|.+|+|||++|.++.-.......+ ..++||+ ....|+..++.+ +++.++
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~--te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID--TEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe--CCCCcCHHHHHH-HHHHcC
Confidence 33445555554457899999999999999998886532221111 4789999 888888877654 445544
No 248
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.79 E-value=0.17 Score=56.71 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+|+|+|.+|+||||++.++..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999988876
No 249
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.76 E-value=0.042 Score=54.23 Aligned_cols=82 Identities=12% Similarity=0.062 Sum_probs=44.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCCccccCC-Cc---eeEEEECCCCCCCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHH
Q 003387 181 VVAILDSIGLDKTAFAGEAYNSSYVKHY-FD---CHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKII 256 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~~~~~~~~-F~---~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 256 (824)
||||.|.+|+||||+|+.+.. ..... +. ....+. ....++....... -...............+.+.+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~--~L~~~~~~~~~~~~~~~--~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~ 75 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ--ILNKRGIPAMEMDIILS--LDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKED 75 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--HHTTCTTTCCCSEEEEE--GGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH--HhCccCcCccceeEEEe--ecccccccchhhH-hhccccccCCCCccccCHHHHHHH
Confidence 799999999999999999987 44322 22 233333 2222222222222 111111111001245567777777
Q ss_pred HHHhcCCCeEE
Q 003387 257 LHEYLMTKRYL 267 (824)
Q Consensus 257 l~~~L~~kr~L 267 (824)
|....+++.+-
T Consensus 76 l~~L~~g~~i~ 86 (194)
T PF00485_consen 76 LKALKNGGSIE 86 (194)
T ss_dssp HHHHHTTSCEE
T ss_pred HHHHhCCCccc
Confidence 77766666543
No 250
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.031 Score=65.04 Aligned_cols=117 Identities=20% Similarity=0.304 Sum_probs=72.0
Q ss_pred CCceechhhHHHHHHHHHcC-------CCCeEEEEEEcCCCChHHHHHHHHhCCccccCCC---ceeEEEECCCCCCCCH
Q 003387 156 RDTVGLDDRMEELLDLLIEG-------PPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYF---DCHAWITEPYSNEYDA 225 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F---~~~~wv~~~vs~~~~~ 225 (824)
..++|-+..++.+.+.+... ...+.++-.+|+.|||||.||+++.. ..| +.-+-++ .|+. ..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~-----~Lfg~e~aliR~D--MSEy-~E 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE-----ALFGDEQALIRID--MSEY-ME 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH-----HhcCCCccceeec--hHHH-HH
Confidence 46899999999999988642 23567888899999999999998877 234 2333333 3322 11
Q ss_pred HHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHhcCCCeE-EEEEecCCCh--hhHHHHHhhCCCC
Q 003387 226 DQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRY-LIVIDDVWSI--DMWDVIQEILPDN 289 (824)
Q Consensus 226 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~-LlVlDdv~~~--~~~~~l~~~~~~~ 289 (824)
+. .+.+-++...+. ..- ++ ...|-+.++.+.| +|.||+|... +..+-+..-+.++
T Consensus 563 kH---sVSrLIGaPPGY--VGy---ee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 563 KH---SVSRLIGAPPGY--VGY---EE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred HH---HHHHHhCCCCCC--cee---cc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 11 222333332211 111 11 2344555667877 7888999865 5667777666643
No 251
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.73 E-value=0.023 Score=68.30 Aligned_cols=49 Identities=20% Similarity=0.171 Sum_probs=38.5
Q ss_pred CCCCCceechhhHHHHHHHHHcC-----------CCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 153 SKSRDTVGLDDRMEELLDLLIEG-----------PPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 153 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
+.-+++.|.+..+++|.+++... -...+-|.++|.+|.||||||+.+.+
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH
Confidence 34456889999999998877431 12346688999999999999999998
No 252
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.73 E-value=0.12 Score=59.51 Aligned_cols=46 Identities=20% Similarity=0.137 Sum_probs=38.4
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-++++|.+..++.+.+.+..+. -...+-++|..|.||||+|+.+.+
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAk 60 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAK 60 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998754 245667899999999999988865
No 253
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.73 E-value=0.23 Score=55.98 Aligned_cols=47 Identities=23% Similarity=0.181 Sum_probs=34.3
Q ss_pred CCCceechhhHHHHHHHHHc--------CCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDLLIE--------GPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~--------~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-+++.|.+.-++.+.+.... +-...+-|-++|++|.|||.+|+++.+
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~ 281 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAN 281 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 45788887777666543211 112356788999999999999999998
No 254
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.72 E-value=0.042 Score=55.81 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=23.7
Q ss_pred CCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 176 PPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 176 ~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.....+|+|.|..|.|||||++.+.+
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999999987
No 255
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=95.70 E-value=0.11 Score=59.87 Aligned_cols=46 Identities=17% Similarity=0.047 Sum_probs=39.1
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|-+..++.+.+++..+. -...+-++|+.|+||||+|+.+.+
T Consensus 15 f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk 60 (563)
T PRK06647 15 FNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFAR 60 (563)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999998754 345688999999999999999877
No 256
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.66 E-value=0.0092 Score=59.96 Aligned_cols=52 Identities=21% Similarity=0.226 Sum_probs=42.8
Q ss_pred CCceechhhHHHHHHHHHcC---CCCeEEEEEEcCCCChHHHHHHHHhCCccccCCC
Q 003387 156 RDTVGLDDRMEELLDLLIEG---PPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYF 209 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F 209 (824)
.+++|-++-++++.=++... ...+..+-++|++|.||||||..|.+ ++...+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn~ 80 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIAN--ELGVNL 80 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHH--HhcCCe
Confidence 57999999888887666543 45688999999999999999999999 666544
No 257
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.66 E-value=0.042 Score=52.13 Aligned_cols=115 Identities=14% Similarity=0.150 Sum_probs=61.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEEC-CCCCCCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHHH
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITE-PYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIIL 257 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~-~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 257 (824)
-.+++|+|..|.|||||++.+... . ......+++.. ++.. ....+. ...+.-.. +-..-+...-.+
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~--~-~~~~G~i~~~~~~~~~-~~~~~~----~~~i~~~~-----qlS~G~~~r~~l 91 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGL--L-KPTSGEILIDGKDIAK-LPLEEL----RRRIGYVP-----QLSGGQRQRVAL 91 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--C-CCCccEEEECCEEccc-CCHHHH----HhceEEEe-----eCCHHHHHHHHH
Confidence 369999999999999999999983 3 23456666651 0111 111111 11111100 001113333446
Q ss_pred HHhcCCCeEEEEEecCCCh---hhHHHHHhhCCC-CCCCcEEEEEechHHHHh
Q 003387 258 HEYLMTKRYLIVIDDVWSI---DMWDVIQEILPD-NQNGSRVLITLTDIRIII 306 (824)
Q Consensus 258 ~~~L~~kr~LlVlDdv~~~---~~~~~l~~~~~~-~~~gs~ilvTtR~~~v~~ 306 (824)
...+....-++++|+.-.. .....+...+.. ...+..++++|.+.+...
T Consensus 92 ~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 92 ARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAE 144 (157)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 6666667788999998643 222223222221 112567888887765543
No 258
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.65 E-value=0.1 Score=60.64 Aligned_cols=45 Identities=20% Similarity=0.133 Sum_probs=37.9
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+++|.+..++.|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk 60 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAK 60 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHH
Confidence 578899999999999988653 234677899999999999999877
No 259
>PRK04296 thymidine kinase; Provisional
Probab=95.64 E-value=0.017 Score=56.61 Aligned_cols=113 Identities=13% Similarity=-0.040 Sum_probs=63.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHH
Q 003387 180 SVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHE 259 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 259 (824)
.++.|+|..|.||||+|..+.. +...+-..++.+. ..++.+.-...++.+++.... ........+....+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k----~~~d~~~~~~~i~~~lg~~~~--~~~~~~~~~~~~~~~~ 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFK----PAIDDRYGEGKVVSRIGLSRE--AIPVSSDTDIFELIEE 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEe----ccccccccCCcEecCCCCccc--ceEeCChHHHHHHHHh
Confidence 4778899999999999988877 4433333334332 112222223345555543211 0112234455555555
Q ss_pred hcCCCeEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEechHH
Q 003387 260 YLMTKRYLIVIDDVWSI--DMWDVIQEILPDNQNGSRVLITLTDIR 303 (824)
Q Consensus 260 ~L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR~~~ 303 (824)
..++.-+||+|.+.-- ++..++...+ ...|-.|++|.++.+
T Consensus 75 -~~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 75 -EGEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred -hCCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 3334458999999542 2233333222 235788999998864
No 260
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.61 E-value=0.01 Score=54.99 Aligned_cols=44 Identities=25% Similarity=0.135 Sum_probs=32.9
Q ss_pred eechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 003387 159 VGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 159 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
||....++++.+.+..-.....-|-|+|..|.||+++|+.++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 57777788888877653333456789999999999999999884
No 261
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.57 E-value=0.14 Score=51.84 Aligned_cols=126 Identities=13% Similarity=0.172 Sum_probs=75.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCc-----ccc------CCC---ceeEEEEC--CCCCCC--CH---------------
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSS-----YVK------HYF---DCHAWITE--PYSNEY--DA--------------- 225 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~-----~~~------~~F---~~~~wv~~--~vs~~~--~~--------------- 225 (824)
-.+++|+|+.|.|||||.+.+..-- ++. ..+ ..+.||.. ++...| .+
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 3699999999999999999998821 010 011 23455541 011111 11
Q ss_pred -------HHHHHHHHHHhCCCCC-cccccccCHHHHH-HHHHHhcCCCeEEEEEecCCCh------hhHHHHHhhCCCCC
Q 003387 226 -------DQILDIVIKFLMPSSR-LSEIMDKNYEMKK-IILHEYLMTKRYLIVIDDVWSI------DMWDVIQEILPDNQ 290 (824)
Q Consensus 226 -------~~~~~~i~~~l~~~~~-~~~~~~~~~~~~~-~~l~~~L~~kr~LlVlDdv~~~------~~~~~l~~~~~~~~ 290 (824)
++...+.+++.+...- ..++...+-.+.+ -.|.+.|..+.=|+|||.--.. ...-++...+...
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e- 188 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE- 188 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-
Confidence 2445556666655211 0113444445554 4667888999999999986543 3444555555444
Q ss_pred CCcEEEEEechHHHHh
Q 003387 291 NGSRVLITLTDIRIII 306 (824)
Q Consensus 291 ~gs~ilvTtR~~~v~~ 306 (824)
|.-|+++|-+-+...
T Consensus 189 -g~tIl~vtHDL~~v~ 203 (254)
T COG1121 189 -GKTVLMVTHDLGLVM 203 (254)
T ss_pred -CCEEEEEeCCcHHhH
Confidence 888999999876665
No 262
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.57 E-value=0.045 Score=58.50 Aligned_cols=67 Identities=15% Similarity=0.170 Sum_probs=45.7
Q ss_pred HHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccC----CCceeEEEECCCCCCCCHHHHHHHHHHHhC
Q 003387 168 LLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKH----YFDCHAWITEPYSNEYDADQILDIVIKFLM 237 (824)
Q Consensus 168 l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~----~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~ 237 (824)
+-++|..+=..-.++-|+|.+|+||||++.+++-+..... .=..++||+ ....|+..++. ++++.++
T Consensus 84 lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~--te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 84 LDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID--TENTFRPERIM-QMAEARG 154 (310)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE--CCCCCCHHHHH-HHHHHcC
Confidence 4455555534578999999999999999988865322211 113789999 88888887755 4455544
No 263
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.53 E-value=0.058 Score=54.52 Aligned_cols=127 Identities=11% Similarity=0.056 Sum_probs=72.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEE-CCCCC--CCCHHHHHHHHHHHhCCCCCccc--ccccCHHHH
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIT-EPYSN--EYDADQILDIVIKFLMPSSRLSE--IMDKNYEMK 253 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~-~~vs~--~~~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~~ 253 (824)
-.++||||..|.||||+++.+.. -..... ..+++. .++.. .....+-..++++..+.....-. ...-+-.++
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~--L~~pt~-G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG--LEEPTS-GEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc--CcCCCC-ceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 56999999999999999999998 333333 334333 11111 12233456667777665332100 011222333
Q ss_pred -HHHHHHhcCCCeEEEEEecCCChhh---HHHHHhhCC--CCCCCcEEEEEechHHHHhhc
Q 003387 254 -KIILHEYLMTKRYLIVIDDVWSIDM---WDVIQEILP--DNQNGSRVLITLTDIRIIISF 308 (824)
Q Consensus 254 -~~~l~~~L~~kr~LlVlDdv~~~~~---~~~l~~~~~--~~~~gs~ilvTtR~~~v~~~f 308 (824)
.-.|.+.|.-+.=+||.|..-+..+ -.++...+. ....|-..+..|-+-.|+..+
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhh
Confidence 3467788888999999999865421 122222222 122355577777777777633
No 264
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=95.51 E-value=0.018 Score=53.15 Aligned_cols=107 Identities=12% Similarity=0.140 Sum_probs=64.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHH
Q 003387 180 SVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHE 259 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 259 (824)
--+.|+|-|||||+++.|..|.- -..+.+...+||+ .-.. ++. -+.+.....+
T Consensus 21 iK~vivGng~VGKssmiqryCkg-ifTkdykktIgvd--fler----qi~------------------v~~Edvr~ml-- 73 (246)
T KOG4252|consen 21 IKFVIVGNGSVGKSSMIQRYCKG-IFTKDYKKTIGVD--FLER----QIK------------------VLIEDVRSML-- 73 (246)
T ss_pred EEEEEECCCccchHHHHHHHhcc-ccccccccccchh--hhhH----HHH------------------hhHHHHHHHH--
Confidence 34579999999999999999972 2234567788987 2211 100 0011111111
Q ss_pred hcCCCeEEEEEecCCCh---hhHHHHHhhCCCCCCCcEEEEEechHHHHhhcccccCCcCcCccccchhhHHHhcCCCch
Q 003387 260 YLMTKRYLIVIDDVWSI---DMWDVIQEILPDNQNGSRVLITLTDIRIIISFQFEDGENMRLDLVPTGGPLRATYKGRPF 336 (824)
Q Consensus 260 ~L~~kr~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~f~~~~~~~~~~~~~~~~~~i~~~c~GlPl 336 (824)
|+. ++.+.|..+...+...|..+..|.+..-. ....+.-++|.+.|+..|.
T Consensus 74 --------------WdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SF------------ea~~~w~~kv~~e~~~IPt 127 (246)
T KOG4252|consen 74 --------------WDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSF------------EATLEWYNKVQKETERIPT 127 (246)
T ss_pred --------------HHhccchhHHHHHHHHhccccceEEEEecccHHHH------------HHHHHHHHHHHHHhccCCe
Confidence 322 45667766666667778777766665322 2233456788899999998
Q ss_pred hHH
Q 003387 337 LIL 339 (824)
Q Consensus 337 ai~ 339 (824)
.++
T Consensus 128 V~v 130 (246)
T KOG4252|consen 128 VFV 130 (246)
T ss_pred EEe
Confidence 754
No 265
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.50 E-value=0.066 Score=49.91 Aligned_cols=103 Identities=11% Similarity=0.050 Sum_probs=57.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHHHH
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILH 258 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 258 (824)
-.+++|+|..|.|||||++.+..-. ......+|+. -. ..+.-- + +-...+...-.|.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~--~~-------------~~i~~~---~--~lS~G~~~rv~la 82 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWG--ST-------------VKIGYF---E--QLSGGEKMRLALA 82 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEEC--Ce-------------EEEEEE---c--cCCHHHHHHHHHH
Confidence 4689999999999999999998842 2234445543 10 000000 0 0001122334456
Q ss_pred HhcCCCeEEEEEecCCCh---hhHHHHHhhCCCCCCCcEEEEEechHHHHh
Q 003387 259 EYLMTKRYLIVIDDVWSI---DMWDVIQEILPDNQNGSRVLITLTDIRIII 306 (824)
Q Consensus 259 ~~L~~kr~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~ 306 (824)
+.+..+.-++++|+.-.. .....+...+... +..|+++|.+.+.+.
T Consensus 83 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 83 KLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 666667778899998643 2233333333222 245777777765543
No 266
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.46 E-value=0.034 Score=54.09 Aligned_cols=44 Identities=27% Similarity=0.249 Sum_probs=36.6
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.++||-++.++++.-.-.+++ ..-+.|.||+|+||||-+..+.+
T Consensus 27 ~dIVGNe~tv~rl~via~~gn--mP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGN--MPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCC--CCceEeeCCCCCchhhHHHHHHH
Confidence 579999999998876666665 77888999999999998777666
No 267
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.46 E-value=0.052 Score=52.30 Aligned_cols=120 Identities=17% Similarity=0.161 Sum_probs=60.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEEC-CCCCCCCHHHHHHHHHHHhCC--CC-Cccc--c-cc-cCH
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITE-PYSNEYDADQILDIVIKFLMP--SS-RLSE--I-MD-KNY 250 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~-~vs~~~~~~~~~~~i~~~l~~--~~-~~~~--~-~~-~~~ 250 (824)
-.+++|+|..|.|||||.+.+..- . ......+++.. ++.+ ...... ...++- .. .... . +. .+.
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~--~-~~~~G~i~~~g~~~~~-~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~ 99 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRL--Y-DPTSGEILIDGVDLRD-LDLESL----RKNIAYVPQDPFLFSGTIRENILSG 99 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC--C-CCCCCEEEECCEEhhh-cCHHHH----HhhEEEEcCCchhccchHHHHhhCH
Confidence 468999999999999999999983 2 22344444430 0111 111111 111110 00 0000 0 00 111
Q ss_pred -HHHHHHHHHhcCCCeEEEEEecCCCh---hhHHHHHhhCCCCCCCcEEEEEechHHHHh
Q 003387 251 -EMKKIILHEYLMTKRYLIVIDDVWSI---DMWDVIQEILPDNQNGSRVLITLTDIRIII 306 (824)
Q Consensus 251 -~~~~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~ 306 (824)
+...-.|...+..+.=+++||+.... ...+.+...+.....+..||++|.+.+...
T Consensus 100 G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 159 (171)
T cd03228 100 GQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 22233456666677789999998754 122222222222122467888888765543
No 268
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.44 E-value=0.046 Score=52.78 Aligned_cols=120 Identities=12% Similarity=0.116 Sum_probs=59.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEEC-CCCCCCCHHHHHHHHHHHhCCCCCccc-ccc------cC-
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITE-PYSNEYDADQILDIVIKFLMPSSRLSE-IMD------KN- 249 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~-~vs~~~~~~~~~~~i~~~l~~~~~~~~-~~~------~~- 249 (824)
-.+++|+|..|.|||||++.+..- . ......+++.. ++.. .+..... ..+.--...+. ... .+
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~--~-~~~~G~i~~~g~~~~~-~~~~~~~----~~i~~~~q~~~~~~~tv~~~lLS~ 99 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGL--L-RPTSGRVRLDGADISQ-WDPNELG----DHVGYLPQDDELFSGSIAENILSG 99 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc--c-CCCCCeEEECCEEccc-CCHHHHH----hheEEECCCCccccCcHHHHCcCH
Confidence 458999999999999999999883 2 22334444430 0111 1111111 11111000000 000 11
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCCh---hhHHHHHhhCCC-CCCCcEEEEEechHHHHh
Q 003387 250 YEMKKIILHEYLMTKRYLIVIDDVWSI---DMWDVIQEILPD-NQNGSRVLITLTDIRIII 306 (824)
Q Consensus 250 ~~~~~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~~~~-~~~gs~ilvTtR~~~v~~ 306 (824)
-+...-.|.+.+..+.=+++||+.... .....+...+.. ...|..||++|.+.....
T Consensus 100 G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 100 GQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 122334455666666678899998754 222222222221 123667888887775443
No 269
>PRK08149 ATP synthase SpaL; Validated
Probab=95.44 E-value=0.057 Score=59.20 Aligned_cols=92 Identities=17% Similarity=0.157 Sum_probs=53.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCC-CCCHHHHHHHHHHHhCCC--------CCcccccccC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSN-EYDADQILDIVIKFLMPS--------SRLSEIMDKN 249 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~-~~~~~~~~~~i~~~l~~~--------~~~~~~~~~~ 249 (824)
-..++|+|..|+|||||++.+.+.... +.++... +.. .-++.++..+........ .+.+......
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~~----dv~v~g~--Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSEA----DVFVIGL--IGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCCC----CeEEEEE--EeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 468899999999999999999984322 2333332 222 235556666666543221 1111111111
Q ss_pred HHHHHHHHHHhc--CCCeEEEEEecCCCh
Q 003387 250 YEMKKIILHEYL--MTKRYLIVIDDVWSI 276 (824)
Q Consensus 250 ~~~~~~~l~~~L--~~kr~LlVlDdv~~~ 276 (824)
....+..+.+++ ++|++||++||+-..
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 222334444444 589999999999654
No 270
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.43 E-value=0.066 Score=55.62 Aligned_cols=93 Identities=13% Similarity=0.027 Sum_probs=49.1
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHH--HHHHHHHHHhCCCCCcccccccCH-HHH
Q 003387 177 PQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDAD--QILDIVIKFLMPSSRLSEIMDKNY-EMK 253 (824)
Q Consensus 177 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~-~~~ 253 (824)
...++|.++|++|+||||.+..+.. .....-..+.+++ .. .|... +-++..++..+...- ......+. ...
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~--~l~~~g~~V~li~--~D-~~r~~a~~ql~~~~~~~~i~~~-~~~~~~dp~~~~ 143 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLAN--KLKKQGKSVLLAA--GD-TFRAAAIEQLEEWAKRLGVDVI-KQKEGADPAAVA 143 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEe--CC-CCCHHHHHHHHHHHHhCCeEEE-eCCCCCCHHHHH
Confidence 3478999999999999999988876 3333333566666 33 23332 223334444442100 00011122 222
Q ss_pred HHHHHHhcCCCeEEEEEecCCC
Q 003387 254 KIILHEYLMTKRYLIVIDDVWS 275 (824)
Q Consensus 254 ~~~l~~~L~~kr~LlVlDdv~~ 275 (824)
...+.....+..=++++|-.-.
T Consensus 144 ~~~l~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 144 FDAIQKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHHHHHCCCCEEEEeCCCC
Confidence 3344444444455778887743
No 271
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.42 E-value=0.097 Score=50.13 Aligned_cols=114 Identities=11% Similarity=0.051 Sum_probs=59.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccc-cCC--Cc---eeEEEECCCCCCCCH--HHHHHHHHHHhCCCCCcccccccCH
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYV-KHY--FD---CHAWITEPYSNEYDA--DQILDIVIKFLMPSSRLSEIMDKNY 250 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~-~~~--F~---~~~wv~~~vs~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~ 250 (824)
-.+++|+|..|.|||||++.+..-... ... |+ ...++ .+.+.. ..+.+.+.-. ... .-..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~----~q~~~~~~~tv~~nl~~~--~~~-----~LS~G 95 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL----PQRPYLPLGTLREQLIYP--WDD-----VLSGG 95 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE----CCCCccccccHHHHhhcc--CCC-----CCCHH
Confidence 458999999999999999999884211 111 11 12232 232211 1233333210 110 11112
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCCh---hhHHHHHhhCCCCCCCcEEEEEechHHHH
Q 003387 251 EMKKIILHEYLMTKRYLIVIDDVWSI---DMWDVIQEILPDNQNGSRVLITLTDIRII 305 (824)
Q Consensus 251 ~~~~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~ilvTtR~~~v~ 305 (824)
+...-.+.+.+..+.=+++||+--.. .....+...+... +..||++|.+....
T Consensus 96 ~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 96 EQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 33344556666667778899987643 2222222222222 35677777776544
No 272
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.42 E-value=0.11 Score=50.26 Aligned_cols=103 Identities=12% Similarity=0.087 Sum_probs=56.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEEC-C---CCCCCCHHHHHHHHHHHhCCCCCcccccccCHHHHH
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITE-P---YSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKK 254 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~-~---vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 254 (824)
-.+++|+|..|.|||||++.+..- . ......+++.. . +.+... +. .-+...
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl--~-~p~~G~i~~~g~~i~~~~q~~~-----------LS-----------gGq~qr 79 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQ--L-IPNGDNDEWDGITPVYKPQYID-----------LS-----------GGELQR 79 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcC--C-CCCCcEEEECCEEEEEEcccCC-----------CC-----------HHHHHH
Confidence 459999999999999999999883 2 22233333320 0 122111 11 112333
Q ss_pred HHHHHhcCCCeEEEEEecCCCh---hhHHHHHhhCCC--CCCCcEEEEEechHHHHh
Q 003387 255 IILHEYLMTKRYLIVIDDVWSI---DMWDVIQEILPD--NQNGSRVLITLTDIRIII 306 (824)
Q Consensus 255 ~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~~~~--~~~gs~ilvTtR~~~v~~ 306 (824)
-.+.+.+..+.-+++||+.-.. ...+.+...+.. ...+..||++|.+.....
T Consensus 80 v~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 80 VAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 4556666677788999998643 222222222221 111245677776665443
No 273
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.41 E-value=0.13 Score=51.07 Aligned_cols=128 Identities=13% Similarity=0.147 Sum_probs=70.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccc-------------------cCCC--ceeEEEE------------CCC------
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYV-------------------KHYF--DCHAWIT------------EPY------ 219 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~-------------------~~~F--~~~~wv~------------~~v------ 219 (824)
-.+++|+|+.|+|||||...+..-.+- ...| +.+-||. +||
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~ 110 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLI 110 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHH
Confidence 458999999999999999988752110 0111 1122222 000
Q ss_pred CCCC--CHHHHHHHHHHHhCCCCCcc-c-cccc-CHHHHHHHHHHhcCCCeEEEEEecCCCh---hhHHHHHhhCCC--C
Q 003387 220 SNEY--DADQILDIVIKFLMPSSRLS-E-IMDK-NYEMKKIILHEYLMTKRYLIVIDDVWSI---DMWDVIQEILPD--N 289 (824)
Q Consensus 220 s~~~--~~~~~~~~i~~~l~~~~~~~-~-~~~~-~~~~~~~~l~~~L~~kr~LlVlDdv~~~---~~~~~l~~~~~~--~ 289 (824)
.... ...+....+++.++...... . .... .-++..-.|.+.|....-+|+-|+--.. ..=+.+...+.. .
T Consensus 111 ~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~ 190 (226)
T COG1136 111 AGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNK 190 (226)
T ss_pred cCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHH
Confidence 0000 12334556666655532110 0 1122 2344445778888888889999986432 111222222221 2
Q ss_pred CCCcEEEEEechHHHHh
Q 003387 290 QNGSRVLITLTDIRIII 306 (824)
Q Consensus 290 ~~gs~ilvTtR~~~v~~ 306 (824)
..|..||+.|-++.+|.
T Consensus 191 ~~g~tii~VTHd~~lA~ 207 (226)
T COG1136 191 ERGKTIIMVTHDPELAK 207 (226)
T ss_pred hcCCEEEEEcCCHHHHH
Confidence 34778999999999997
No 274
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.40 E-value=0.057 Score=50.71 Aligned_cols=120 Identities=10% Similarity=-0.035 Sum_probs=62.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECC-CCCCCCHHHHHHHHHHHhCC---CCC------cccccccC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEP-YSNEYDADQILDIVIKFLMP---SSR------LSEIMDKN 249 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~-vs~~~~~~~~~~~i~~~l~~---~~~------~~~~~~~~ 249 (824)
.+|-|++-.|.||||+|-.+.- +...+=..+.+|.-- -........+++.+ ..+.. ..+ .+......
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4678889999999999977655 332222233333200 22234444544444 10100 000 00000011
Q ss_pred HHHHHHHHHHhcCC-CeEEEEEecCCCh-----hhHHHHHhhCCCCCCCcEEEEEechH
Q 003387 250 YEMKKIILHEYLMT-KRYLIVIDDVWSI-----DMWDVIQEILPDNQNGSRVLITLTDI 302 (824)
Q Consensus 250 ~~~~~~~l~~~L~~-kr~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~ilvTtR~~ 302 (824)
..+.....++.+.. +-=|||||++-.. .+.+.+...+.....+.-||+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 12233444555544 4459999999644 24455555555555677899999974
No 275
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.32 E-value=0.029 Score=55.35 Aligned_cols=114 Identities=7% Similarity=0.055 Sum_probs=57.1
Q ss_pred hHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCcc
Q 003387 164 RMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLS 243 (824)
Q Consensus 164 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~ 243 (824)
+..+.+..+..+. -+++.|.|.+|.||||+++.+.+ .....=..++++. .+ .+....+.+..+...
T Consensus 5 ~Q~~a~~~~l~~~--~~~~~l~G~aGtGKT~~l~~~~~--~~~~~g~~v~~~a--pT-----~~Aa~~L~~~~~~~a--- 70 (196)
T PF13604_consen 5 EQREAVRAILTSG--DRVSVLQGPAGTGKTTLLKALAE--ALEAAGKRVIGLA--PT-----NKAAKELREKTGIEA--- 70 (196)
T ss_dssp HHHHHHHHHHHCT--CSEEEEEESTTSTHHHHHHHHHH--HHHHTT--EEEEE--SS-----HHHHHHHHHHHTS-E---
T ss_pred HHHHHHHHHHhcC--CeEEEEEECCCCCHHHHHHHHHH--HHHhCCCeEEEEC--Cc-----HHHHHHHHHhhCcch---
Confidence 3444555554443 45788899999999999999877 3333212344444 22 223333444433211
Q ss_pred cccccCHHHHHHHHHHhc------CCCeEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEE
Q 003387 244 EIMDKNYEMKKIILHEYL------MTKRYLIVIDDVWSI--DMWDVIQEILPDNQNGSRVLI 297 (824)
Q Consensus 244 ~~~~~~~~~~~~~l~~~L------~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilv 297 (824)
.+...........- ..++-+||+|+.+.. ..+..+....+. .|+|+|+
T Consensus 71 ----~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klil 126 (196)
T PF13604_consen 71 ----QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLIL 126 (196)
T ss_dssp ----EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEE
T ss_pred ----hhHHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEE
Confidence 11111100000000 123349999999865 467777766654 4678873
No 276
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.32 E-value=0.054 Score=59.26 Aligned_cols=99 Identities=11% Similarity=0.080 Sum_probs=56.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCH-HHHHHHHHHHhCCCC--------CcccccccC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDA-DQILDIVIKFLMPSS--------RLSEIMDKN 249 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~-~~~~~~i~~~l~~~~--------~~~~~~~~~ 249 (824)
-..++|+|..|+|||||++.+.+. .. .+.++.+- +.+..+. .++.++++..-.... +.+.....-
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~--~~--~dv~Vi~l--IGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRG--TT--ADVIVVGL--VGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccC--CC--CCEEEEEE--EcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 467999999999999999999873 22 24556665 6555433 345555433311110 101011111
Q ss_pred HHHHHHHHHHhc--CCCeEEEEEecCCCh-hhHHHHH
Q 003387 250 YEMKKIILHEYL--MTKRYLIVIDDVWSI-DMWDVIQ 283 (824)
Q Consensus 250 ~~~~~~~l~~~L--~~kr~LlVlDdv~~~-~~~~~l~ 283 (824)
....+..+.+++ +++++|+++||+-.. ..+.++.
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslTR~A~A~REIs 272 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTRYAQAQREIA 272 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChHHHHHHHHHHH
Confidence 122233344444 689999999999654 3444444
No 277
>PTZ00301 uridine kinase; Provisional
Probab=95.32 E-value=0.015 Score=57.77 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..+|||.|.+|.||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 57999999999999999998876
No 278
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.32 E-value=0.097 Score=50.52 Aligned_cols=119 Identities=13% Similarity=0.080 Sum_probs=62.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEEC-CCCCCCCHHHHHHHHHHHhCC--CC-Cc-cc---ccc--c
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITE-PYSNEYDADQILDIVIKFLMP--SS-RL-SE---IMD--K 248 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~-~vs~~~~~~~~~~~i~~~l~~--~~-~~-~~---~~~--~ 248 (824)
-.+++|+|..|.|||||++.+.... ......+++.. +++.. . ..+...++. .. .. +. .+. .
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~-~-----~~~~~~i~~~~q~~~~~~~~tv~~~~~L 96 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKE-P-----EEVKRRIGYLPEEPSLYENLTVRENLKL 96 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccc-h-----HhhhccEEEEecCCccccCCcHHHHhhc
Confidence 4689999999999999999998832 22344555431 01110 0 011111110 00 00 00 000 1
Q ss_pred CH-HHHHHHHHHhcCCCeEEEEEecCCChh---hHHHHHhhCCC-CCCCcEEEEEechHHHHh
Q 003387 249 NY-EMKKIILHEYLMTKRYLIVIDDVWSID---MWDVIQEILPD-NQNGSRVLITLTDIRIII 306 (824)
Q Consensus 249 ~~-~~~~~~l~~~L~~kr~LlVlDdv~~~~---~~~~l~~~~~~-~~~gs~ilvTtR~~~v~~ 306 (824)
+. +...-.|...|..+.=++++|+.-..- ..+.+...+.. ...|..||++|.+...+.
T Consensus 97 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 97 SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 22 223345677777788899999986542 22223222221 122667888888776544
No 279
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.30 E-value=0.07 Score=63.71 Aligned_cols=157 Identities=15% Similarity=0.102 Sum_probs=75.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHHHH
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILH 258 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 258 (824)
.+++.|+|+.|.||||+.+.+.... + ....-++|. +..... -.++.++...++......+ ...+...-...+.
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~-l--~aq~G~~Vp--a~~~~~-~~~~d~i~~~i~~~~si~~-~LStfS~~m~~~~ 394 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLA-L--MFQSGIPIP--ANEHSE-IPYFEEIFADIGDEQSIEQ-NLSTFSGHMKNIS 394 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHH-H--HHHhCCCcc--CCcccc-ccchhheeeecChHhHHhh-hhhHHHHHHHHHH
Confidence 5799999999999999999986631 0 011111222 111000 0011111111111100000 0000011111223
Q ss_pred HhcC--CCeEEEEEecCCChhh---HHHH----HhhCCCCCCCcEEEEEechHHHHhhcccccC----------CcCcCc
Q 003387 259 EYLM--TKRYLIVIDDVWSIDM---WDVI----QEILPDNQNGSRVLITLTDIRIIISFQFEDG----------ENMRLD 319 (824)
Q Consensus 259 ~~L~--~kr~LlVlDdv~~~~~---~~~l----~~~~~~~~~gs~ilvTtR~~~v~~~f~~~~~----------~~~~~~ 319 (824)
..+. ..+-|+++|..-...+ -..+ ...+. ..|+.+|+||....+........+ +...+.
T Consensus 395 ~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~p~ 472 (771)
T TIGR01069 395 AILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLSPT 472 (771)
T ss_pred HHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCceE
Confidence 3332 4789999999976422 2222 22222 357899999999887651111000 000010
Q ss_pred c--------ccchhhHHHhcCCCchhHHHHHhHH
Q 003387 320 L--------VPTGGPLRATYKGRPFLILYHGSIS 345 (824)
Q Consensus 320 ~--------~~~~~~i~~~c~GlPlai~~~~~~l 345 (824)
+ ...|-+|++++ |+|-.+.--|..+
T Consensus 473 Ykl~~G~~g~S~a~~iA~~~-Glp~~ii~~A~~~ 505 (771)
T TIGR01069 473 YKLLKGIPGESYAFEIAQRY-GIPHFIIEQAKTF 505 (771)
T ss_pred EEECCCCCCCcHHHHHHHHh-CcCHHHHHHHHHH
Confidence 0 23466677666 7898888877776
No 280
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=95.28 E-value=0.082 Score=56.16 Aligned_cols=45 Identities=11% Similarity=0.024 Sum_probs=37.0
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+++|.+..++.+.+.+..+. -....-++|..|+||+|+|..+.+
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~ 48 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIE 48 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 468899999999999987764 236888999999999998866544
No 281
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.26 E-value=0.097 Score=50.51 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 003387 181 VVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~ 201 (824)
++.++|++|+||||++..+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999887
No 282
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.26 E-value=0.012 Score=53.44 Aligned_cols=20 Identities=30% Similarity=0.260 Sum_probs=19.0
Q ss_pred EEEEcCCCChHHHHHHHHhC
Q 003387 182 VAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 182 i~I~G~gGvGKTtLa~~v~~ 201 (824)
|+|.|+.|+||||+|+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999988
No 283
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.24 E-value=0.26 Score=58.86 Aligned_cols=48 Identities=23% Similarity=0.179 Sum_probs=39.3
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
...++|....+.++.+.+..-...-.-|-|+|..|+|||++|+.+++.
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 357999999999998877653333457889999999999999999984
No 284
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.23 E-value=0.1 Score=57.73 Aligned_cols=91 Identities=13% Similarity=0.002 Sum_probs=51.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCH--HHHHHHHHHHhCCCCCcccccccCHHHHHH
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDA--DQILDIVIKFLMPSSRLSEIMDKNYEMKKI 255 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 255 (824)
...+|.++|..|+||||.|..+.. .....-..++-|+ . ..+.. .+.++.++.+++...... ....+......
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~--~L~~~g~kV~lV~--~-D~~R~aa~eQL~~la~~~gvp~~~~-~~~~d~~~i~~ 167 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR--YFKKKGLKVGLVA--A-DTYRPAAYDQLKQLAEKIGVPFYGD-PDNKDAVEIAK 167 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEec--C-CCCCHHHHHHHHHHHHHcCCcEEec-CCccCHHHHHH
Confidence 478999999999999999999987 3433322444554 2 22333 445666677665421100 01123333333
Q ss_pred HHHHhcCCCeEEEEEecCCC
Q 003387 256 ILHEYLMTKRYLIVIDDVWS 275 (824)
Q Consensus 256 ~l~~~L~~kr~LlVlDdv~~ 275 (824)
...+.+++. =+||+|..-.
T Consensus 168 ~al~~~~~~-DvVIIDTAGr 186 (437)
T PRK00771 168 EGLEKFKKA-DVIIVDTAGR 186 (437)
T ss_pred HHHHHhhcC-CEEEEECCCc
Confidence 333334444 5788998853
No 285
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.21 E-value=0.069 Score=55.13 Aligned_cols=143 Identities=13% Similarity=0.102 Sum_probs=82.7
Q ss_pred CCCceechhhHHHHHHHHHcC--CCCeEEEEEEcCCCChHHHHHHHHhCC-ccccCCCceeEEEECCCCCCCCH-HHHHH
Q 003387 155 SRDTVGLDDRMEELLDLLIEG--PPQLSVVAILDSIGLDKTAFAGEAYNS-SYVKHYFDCHAWITEPYSNEYDA-DQILD 230 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~-~~~~~~F~~~~wv~~~vs~~~~~-~~~~~ 230 (824)
...++|..++..++-+++... .+...-+.|+|+.|.|||+|...+..| .+..++| +-|. ....... +-.++
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~--Lng~~~~dk~al~ 97 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVR--LNGELQTDKIALK 97 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEE--ECccchhhHHHHH
Confidence 457889888888888888652 223567789999999999999888875 2233333 3333 3333322 23556
Q ss_pred HHHHHhCCCCCcccccccCHHHHHHHHHHhcCC------CeEEEEEecCCChh-------hHHHHHhhCCCCCCCcEEEE
Q 003387 231 IVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMT------KRYLIVIDDVWSID-------MWDVIQEILPDNQNGSRVLI 297 (824)
Q Consensus 231 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~------kr~LlVlDdv~~~~-------~~~~l~~~~~~~~~gs~ilv 297 (824)
.|.+|+............+..+....|-..|+. -++..|+|..+--. -++-+...-....+=|-|-+
T Consensus 98 ~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~ 177 (408)
T KOG2228|consen 98 GITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGV 177 (408)
T ss_pred HHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEe
Confidence 666666442111012233334444455555532 25788888776321 12222222223556788999
Q ss_pred EechH
Q 003387 298 TLTDI 302 (824)
Q Consensus 298 TtR~~ 302 (824)
|||-.
T Consensus 178 Ttrld 182 (408)
T KOG2228|consen 178 TTRLD 182 (408)
T ss_pred ecccc
Confidence 99964
No 286
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.063 Score=59.56 Aligned_cols=98 Identities=17% Similarity=0.185 Sum_probs=66.1
Q ss_pred CCCCCCceechhhHHHHHHHHHcC----------CCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCC
Q 003387 152 SSKSRDTVGLDDRMEELLDLLIEG----------PPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSN 221 (824)
Q Consensus 152 ~~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~ 221 (824)
.+.-.++-|.+..+.++.+++..- -...+=|-+.|++|.|||.||+++.+ +..-.| +. ++.
T Consensus 186 nv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAg--el~vPf-----~~--isA 256 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAG--ELGVPF-----LS--ISA 256 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhh--hcCCce-----Ee--ecc
Confidence 344567889999999988887641 12456788999999999999999999 555444 33 332
Q ss_pred CCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHhcCCCeEEEEEecCCC
Q 003387 222 EYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWS 275 (824)
Q Consensus 222 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 275 (824)
. +|+....+ .+++.+.+...+.-..-.+++++|+++-
T Consensus 257 p--------eivSGvSG---------ESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 257 P--------EIVSGVSG---------ESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred h--------hhhcccCc---------ccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 2 23333322 2334444445555566899999999974
No 287
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.19 E-value=0.078 Score=56.87 Aligned_cols=46 Identities=20% Similarity=0.200 Sum_probs=38.5
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..++|....+.++.+.+..-...-.-|-|+|-.|+||+++|+.++.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999998876433345678999999999999999987
No 288
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.19 E-value=0.06 Score=52.52 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 003387 181 VVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~ 201 (824)
||.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 289
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.16 E-value=0.073 Score=55.76 Aligned_cols=39 Identities=26% Similarity=0.200 Sum_probs=27.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEE
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIT 216 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~ 216 (824)
..++|+|+|.+|+||||++..+......+..-..+..|+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 357999999999999999998877322121112455665
No 290
>PRK04040 adenylate kinase; Provisional
Probab=95.15 E-value=0.052 Score=53.05 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..+|+|+|++|+||||+++.+.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999999988
No 291
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.15 E-value=0.32 Score=52.00 Aligned_cols=40 Identities=10% Similarity=0.199 Sum_probs=26.2
Q ss_pred CeEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEechHH
Q 003387 264 KRYLIVIDDVWSI--DMWDVIQEILPDNQNGSRVLITLTDIR 303 (824)
Q Consensus 264 kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR~~~ 303 (824)
++-++|+|++... ...+.+...+..-..++.+|+||.+.+
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~ 147 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPS 147 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChh
Confidence 3444567999864 456777766665545677777777653
No 292
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.14 E-value=0.054 Score=59.48 Aligned_cols=100 Identities=14% Similarity=0.093 Sum_probs=55.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCH-HHHHHHHHHHhCCC--------CCccccccc
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDA-DQILDIVIKFLMPS--------SRLSEIMDK 248 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~-~~~~~~i~~~l~~~--------~~~~~~~~~ 248 (824)
.-..++|+|..|+|||||++.+.+.. . -+..+++- +.+..+. .+...+.+..-+.. .+.+.....
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~--~--~d~~v~~~--iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~ 230 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA--D--ADVSVIGL--IGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRR 230 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc--C--CCEEEEEE--EecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHH
Confidence 35688999999999999999999842 2 23445555 5554333 34444443332111 110101111
Q ss_pred CHHHHHHHHHHhc--CCCeEEEEEecCCCh-hhHHHHH
Q 003387 249 NYEMKKIILHEYL--MTKRYLIVIDDVWSI-DMWDVIQ 283 (824)
Q Consensus 249 ~~~~~~~~l~~~L--~~kr~LlVlDdv~~~-~~~~~l~ 283 (824)
-....+..+.+++ +++.+|+++||+-.. ..+.++.
T Consensus 231 ~a~~~a~tiAEyfrd~G~~Vll~~DslTr~A~A~REis 268 (442)
T PRK08927 231 QAAYLTLAIAEYFRDQGKDVLCLMDSVTRFAMAQREIG 268 (442)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCcHHHHhhhhHHH
Confidence 1122233455555 589999999999654 3344443
No 293
>PTZ00035 Rad51 protein; Provisional
Probab=95.14 E-value=0.16 Score=54.50 Aligned_cols=70 Identities=13% Similarity=0.066 Sum_probs=47.0
Q ss_pred HHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCcccc----CCCceeEEEECCCCCCCCHHHHHHHHHHHhCC
Q 003387 166 EELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVK----HYFDCHAWITEPYSNEYDADQILDIVIKFLMP 238 (824)
Q Consensus 166 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~----~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~ 238 (824)
..+-++|..+=..-.++.|+|..|.|||||+..++-..+.. ..=..++|++ ....|+.+++ .+++++++.
T Consensus 105 ~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyId--tE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 105 TQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYID--TEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred HHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEE--ccCCCCHHHH-HHHHHHhCC
Confidence 34555665554567899999999999999998886432221 1123567998 7777787774 445665544
No 294
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.13 E-value=0.011 Score=58.96 Aligned_cols=91 Identities=22% Similarity=0.124 Sum_probs=48.5
Q ss_pred eCccCcCCCceEEEEEcc--cCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCcccee---
Q 003387 684 LAEYLFPHSLTHLSFSNT--DLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTM--- 758 (824)
Q Consensus 684 l~~~~~~~~L~~L~L~~~--~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~--- 758 (824)
+.++..+++|++|.++.| +...........+|+|++|++++|.+....-......+++|..|++.+|.-.. +..
T Consensus 58 ~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre 136 (260)
T KOG2739|consen 58 LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN-LDDYRE 136 (260)
T ss_pred cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc-cccHHH
Confidence 344456667777777776 44333333444567777777777766542222334456666666666665322 110
Q ss_pred -ccCcccCccEEEEecCC
Q 003387 759 -GNAAMPKLECLIINPCA 775 (824)
Q Consensus 759 -~~~~lp~L~~L~l~~c~ 775 (824)
.+.-+|+|+.|+-..+.
T Consensus 137 ~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 137 KVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred HHHHHhhhhccccccccC
Confidence 12235666666544443
No 295
>PRK06547 hypothetical protein; Provisional
Probab=95.12 E-value=0.025 Score=54.31 Aligned_cols=26 Identities=27% Similarity=0.216 Sum_probs=23.2
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCC
Q 003387 177 PQLSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 177 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
....+|+|.|+.|+||||+|+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34889999999999999999999873
No 296
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.11 E-value=0.015 Score=58.10 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
+..+|+|+|.+|+||||||+.+..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999988
No 297
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.11 E-value=0.098 Score=55.40 Aligned_cols=92 Identities=13% Similarity=0.157 Sum_probs=51.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCC-CCCCHHHHHHHHHHHhCCC--------CCcccccccC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYS-NEYDADQILDIVIKFLMPS--------SRLSEIMDKN 249 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs-~~~~~~~~~~~i~~~l~~~--------~~~~~~~~~~ 249 (824)
-..++|+|..|.|||||.+.+.+. ... +..+..- +. +.-++.++.......-... .+.+.....-
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~--~~~--~~~vi~~--iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARG--TTA--DVNVIAL--IGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCC--CCC--CEEEEEE--EecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 457899999999999999999984 222 2223232 22 2235555555554432211 1111111111
Q ss_pred HHHHHHHHHHhc--CCCeEEEEEecCCCh
Q 003387 250 YEMKKIILHEYL--MTKRYLIVIDDVWSI 276 (824)
Q Consensus 250 ~~~~~~~l~~~L--~~kr~LlVlDdv~~~ 276 (824)
.......+.+++ ++|.+|+++||+-..
T Consensus 143 ~~~~a~~~AEyfr~~g~~Vll~~Dsltr~ 171 (326)
T cd01136 143 AAYTATAIAEYFRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeccchHH
Confidence 222233444444 589999999998654
No 298
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.11 E-value=0.12 Score=49.07 Aligned_cols=124 Identities=13% Similarity=0.176 Sum_probs=72.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEE-----------------------------------CCCC---
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIT-----------------------------------EPYS--- 220 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~-----------------------------------~~vs--- 220 (824)
-.++.|+|..|.||||+.+.+|...+-. ...+|+. +||.
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL 104 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPL 104 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhh
Confidence 4689999999999999999999853221 1233332 1111
Q ss_pred --CCCCHHHHHH---HHHHHhCCCCC---cccccccCHHHHHHHHHHhcCCCeEEEEEecC----CChhhHHHHHhhCCC
Q 003387 221 --NEYDADQILD---IVIKFLMPSSR---LSEIMDKNYEMKKIILHEYLMTKRYLIVIDDV----WSIDMWDVIQEILPD 288 (824)
Q Consensus 221 --~~~~~~~~~~---~i~~~l~~~~~---~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv----~~~~~~~~l~~~~~~ 288 (824)
......++.+ +.++..+.... .|. +-..-++-.-.|.+.+-++.-+|+=|.- +....|+-+...-.-
T Consensus 105 ~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei 183 (223)
T COG2884 105 RVIGKPPREIRRRVSEVLDLVGLKHKARALPS-QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI 183 (223)
T ss_pred hccCCCHHHHHHHHHHHHHHhccchhhhcCcc-ccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH
Confidence 0112223333 33333333221 111 1122344445677777888888888865 334456655433333
Q ss_pred CCCCcEEEEEechHHHHh
Q 003387 289 NQNGSRVLITLTDIRIII 306 (824)
Q Consensus 289 ~~~gs~ilvTtR~~~v~~ 306 (824)
+..|..|+++|-+.++.+
T Consensus 184 nr~GtTVl~ATHd~~lv~ 201 (223)
T COG2884 184 NRLGTTVLMATHDLELVN 201 (223)
T ss_pred hhcCcEEEEEeccHHHHH
Confidence 456899999999998876
No 299
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.11 E-value=0.17 Score=49.31 Aligned_cols=124 Identities=8% Similarity=0.040 Sum_probs=68.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEEC-----------------CCCCCCCH----------------
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITE-----------------PYSNEYDA---------------- 225 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~-----------------~vs~~~~~---------------- 225 (824)
-.|++|+|+.|.|||||.+.+..=+.. =+..+||.. .|-|.|+.
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE~~---~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~ 104 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLEEP---DSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK 104 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCcCC---CCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence 469999999999999999999873322 234555541 11222321
Q ss_pred ---------HHHHHHHHHHhCCCCC---cccccccCHHHHHHHHHHhcCCCeEEEEEecCCChhh---HHHHHhhCC-CC
Q 003387 226 ---------DQILDIVIKFLMPSSR---LSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWSIDM---WDVIQEILP-DN 289 (824)
Q Consensus 226 ---------~~~~~~i~~~l~~~~~---~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~---~~~l~~~~~-~~ 289 (824)
++...++++.++..+. .| .+-..-++-.-.|.+.|.-+.=++.+|..-+.-+ -.++..-.. -.
T Consensus 105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA 183 (240)
T COG1126 105 VKKLSKAEAREKALELLEKVGLADKADAYP-AQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLA 183 (240)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhhCc-cccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHH
Confidence 2334445555554221 11 1112234445578888888888999999976522 222222111 12
Q ss_pred CCCcEEEEEechHHHHh
Q 003387 290 QNGSRVLITLTDIRIII 306 (824)
Q Consensus 290 ~~gs~ilvTtR~~~v~~ 306 (824)
..|-..++.|....-|.
T Consensus 184 ~eGmTMivVTHEM~FAr 200 (240)
T COG1126 184 EEGMTMIIVTHEMGFAR 200 (240)
T ss_pred HcCCeEEEEechhHHHH
Confidence 34555666666654444
No 300
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.10 E-value=0.028 Score=55.32 Aligned_cols=55 Identities=22% Similarity=0.171 Sum_probs=34.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCC--CHHHHHHHHHHHhCC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEY--DADQILDIVIKFLMP 238 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~--~~~~~~~~i~~~l~~ 238 (824)
.+||.+||+.|+||||.+-++.. +.+..=..+..++ . ..+ ...+-++..++.++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa--~~~~~~~~v~lis--~-D~~R~ga~eQL~~~a~~l~v 57 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAA--RLKLKGKKVALIS--A-DTYRIGAVEQLKTYAEILGV 57 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEE--E-STSSTHHHHHHHHHHHHHTE
T ss_pred CEEEEEECCCCCchHhHHHHHHH--HHhhccccceeec--C-CCCCccHHHHHHHHHHHhcc
Confidence 37999999999999999888776 3333333455665 2 222 233445566666653
No 301
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.09 E-value=0.23 Score=54.35 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|+|+.|.||||||+.+..
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 35899999999999999999876
No 302
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.09 E-value=0.25 Score=56.58 Aligned_cols=49 Identities=20% Similarity=0.180 Sum_probs=41.3
Q ss_pred CCCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 003387 154 KSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
....++|....+.++.+.+..-...-.-|-|+|..|+|||++|+.+++.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 3567999999999999988765444567889999999999999999984
No 303
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=0.085 Score=59.61 Aligned_cols=96 Identities=15% Similarity=0.137 Sum_probs=57.5
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCC--CCHHHHHHHHH
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNE--YDADQILDIVI 233 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~--~~~~~~~~~i~ 233 (824)
.+++-....+++..+.....--...-|-|.|..|+|||+||+++++-.. +.+.-.+.+|+ .|.- -..+++|+.+
T Consensus 408 ~d~i~~~s~kke~~n~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~--Cs~l~~~~~e~iQk~l- 483 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSPVFRHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVS--CSTLDGSSLEKIQKFL- 483 (952)
T ss_pred CceeecchhhhhhhhhhcccccccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEe--chhccchhHHHHHHHH-
Confidence 3444444444444443333322356788999999999999999999433 44444556666 4432 1223333332
Q ss_pred HHhCCCCCcccccccCHHHHHHHHHHhcCCCeEEEEEecCCC
Q 003387 234 KFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWS 275 (824)
Q Consensus 234 ~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 275 (824)
...+...+....-+|||||+.-
T Consensus 484 --------------------~~vfse~~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 484 --------------------NNVFSEALWYAPSIIVLDDLDC 505 (952)
T ss_pred --------------------HHHHHHHHhhCCcEEEEcchhh
Confidence 2333445556788999999963
No 304
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.08 E-value=0.022 Score=56.97 Aligned_cols=120 Identities=13% Similarity=0.101 Sum_probs=59.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHHHH
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILH 258 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 258 (824)
.+++.|+|..|.||||+.+.+...... .+-...+|.. ...+ ....++...+.......+ .......-..++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----~~~~-~~~d~i~~~l~~~~si~~-~~S~f~~el~~l~ 100 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----SATI-GLVDKIFTRMSSRESVSS-GQSAFMIDLYQVS 100 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----CcEE-eeeeeeeeeeCCccChhh-ccchHHHHHHHHH
Confidence 488999999999999999998742111 1111122211 0000 012222222322221110 0001111112222
Q ss_pred H--hcCCCeEEEEEecCCChhh---H----HHHHhhCCCC-CCCcEEEEEechHHHHh
Q 003387 259 E--YLMTKRYLIVIDDVWSIDM---W----DVIQEILPDN-QNGSRVLITLTDIRIII 306 (824)
Q Consensus 259 ~--~L~~kr~LlVlDdv~~~~~---~----~~l~~~~~~~-~~gs~ilvTtR~~~v~~ 306 (824)
. .+..++-|++||..-...+ . ..+...+... ..+..+|+||-..+++.
T Consensus 101 ~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~ 158 (213)
T cd03281 101 KALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFN 158 (213)
T ss_pred HHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHH
Confidence 2 2246789999999976432 1 1222223222 23468999999998877
No 305
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.08 E-value=0.06 Score=56.20 Aligned_cols=38 Identities=26% Similarity=0.318 Sum_probs=31.3
Q ss_pred echhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHH
Q 003387 160 GLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEA 199 (824)
Q Consensus 160 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v 199 (824)
+|..+..--+++|.+++ +..|.+.|.+|.|||-||-+.
T Consensus 228 prn~eQ~~ALdlLld~d--I~lV~L~G~AGtGKTlLALaA 265 (436)
T COG1875 228 PRNAEQRVALDLLLDDD--IDLVSLGGKAGTGKTLLALAA 265 (436)
T ss_pred cccHHHHHHHHHhcCCC--CCeEEeeccCCccHhHHHHHH
Confidence 36666666778888877 999999999999999998553
No 306
>PF14516 AAA_35: AAA-like domain
Probab=95.06 E-value=0.41 Score=51.49 Aligned_cols=116 Identities=16% Similarity=0.111 Sum_probs=69.6
Q ss_pred CCCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCC-----CCCHHHH
Q 003387 154 KSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSN-----EYDADQI 228 (824)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~-----~~~~~~~ 228 (824)
+.+-.|.|...-+++.+.|... -..+.|.|+-.+|||||...+.+..+- ..+ .+++++ ... ..+..+.
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id--~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYID--LQQLGSAIFSDLEQF 81 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEE--eecCCCcccCCHHHH
Confidence 4455668886777777777663 248899999999999999999883222 233 345666 332 1245555
Q ss_pred HHHHH----HHhCCCCCccc-c--cccCHHHHHHHHHHhc-C--CCeEEEEEecCCCh
Q 003387 229 LDIVI----KFLMPSSRLSE-I--MDKNYEMKKIILHEYL-M--TKRYLIVIDDVWSI 276 (824)
Q Consensus 229 ~~~i~----~~l~~~~~~~~-~--~~~~~~~~~~~l~~~L-~--~kr~LlVlDdv~~~ 276 (824)
++.++ +++........ + ...........+.+.+ + +++.+|++|+|+..
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l 139 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRL 139 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhh
Confidence 55444 44444322111 0 1112234444455543 2 58999999999754
No 307
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.05 E-value=0.075 Score=53.10 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=40.0
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCCccccCCCc--eeEEEE-----CCCCCCCCHHHH--HHHHHHHhCCC
Q 003387 177 PQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFD--CHAWIT-----EPYSNEYDADQI--LDIVIKFLMPS 239 (824)
Q Consensus 177 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~--~~~wv~-----~~vs~~~~~~~~--~~~i~~~l~~~ 239 (824)
++...|.|+||+|.||||..|.++.+ +...+. .++=.+ .+..-+.|+++. .++..++.+..
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~h--l~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LG 86 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSH--LHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLG 86 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHH--HhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCC
Confidence 45778889999999999999999984 333332 222221 124455677765 45788877653
No 308
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.03 E-value=0.017 Score=57.60 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
...+|+|+|+.|+||||||+.+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999987
No 309
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.99 E-value=0.097 Score=56.89 Aligned_cols=100 Identities=20% Similarity=0.127 Sum_probs=56.4
Q ss_pred HHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCc-c
Q 003387 165 MEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRL-S 243 (824)
Q Consensus 165 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~-~ 243 (824)
...+-+.|..+-..-.++.|.|.+|+|||||+.++.. .....-..++|++ ..+. ..++. .-++.++...+. .
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~--~~a~~g~~VlYvs--~EEs--~~qi~-~Ra~rlg~~~~~l~ 140 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAA--RLAKRGGKVLYVS--GEES--PEQIK-LRADRLGISTENLY 140 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHH--HHHhcCCeEEEEE--CCcC--HHHHH-HHHHHcCCCcccEE
Confidence 4455566655544467999999999999999998876 3333335677887 4332 33332 223445432110 0
Q ss_pred cccccCHHHHHHHHHHhcCCCeEEEEEecCC
Q 003387 244 EIMDKNYEMKKIILHEYLMTKRYLIVIDDVW 274 (824)
Q Consensus 244 ~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~ 274 (824)
.....+.+.+...+. +.+.-+||+|.+.
T Consensus 141 l~~e~~le~I~~~i~---~~~~~lVVIDSIq 168 (372)
T cd01121 141 LLAETNLEDILASIE---ELKPDLVIIDSIQ 168 (372)
T ss_pred EEccCcHHHHHHHHH---hcCCcEEEEcchH
Confidence 012223344333332 2355678888874
No 310
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.99 E-value=0.076 Score=57.58 Aligned_cols=124 Identities=16% Similarity=0.132 Sum_probs=67.1
Q ss_pred CCCceechhhHHH-HHHHHHc-CCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHH
Q 003387 155 SRDTVGLDDRMEE-LLDLLIE-GPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIV 232 (824)
Q Consensus 155 ~~~~vGr~~~~~~-l~~~L~~-~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i 232 (824)
++-++|-...... +...... .......+-|||..|.|||.|++++.| ...........++ ++ ......++
T Consensus 87 dnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y--~~----se~f~~~~ 158 (408)
T COG0593 87 DNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVY--LT----SEDFTNDF 158 (408)
T ss_pred hheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEe--cc----HHHHHHHH
Confidence 3446665444332 3333333 233478999999999999999999999 6666665333333 22 22333344
Q ss_pred HHHhCCCCCcccccccCHHHHHHHHHHhcCCCeEEEEEecCCChh---hH-HHHHhhCCC-CCCCcEEEEEech
Q 003387 233 IKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWSID---MW-DVIQEILPD-NQNGSRVLITLTD 301 (824)
Q Consensus 233 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~---~~-~~l~~~~~~-~~~gs~ilvTtR~ 301 (824)
+..+.. .-.+..++.. .-=++++||++-.. .| +.+...|.. ...|-.||+|++.
T Consensus 159 v~a~~~-------------~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr 217 (408)
T COG0593 159 VKALRD-------------NEMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDR 217 (408)
T ss_pred HHHHHh-------------hhHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 333321 1223444444 23388899997531 22 222222221 1223389999864
No 311
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.98 E-value=0.01 Score=35.25 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=8.6
Q ss_pred ccEeecCCccccccchhh
Q 003387 570 LYTLDMPFSYIDHTADEF 587 (824)
Q Consensus 570 L~~L~L~~~~l~~lp~~i 587 (824)
|++|||++|.++.+|.+|
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444555555444444443
No 312
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.97 E-value=0.06 Score=59.66 Aligned_cols=95 Identities=12% Similarity=0.138 Sum_probs=58.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCC-CHHHHHHHHHHHhCCCC--------CcccccccC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEY-DADQILDIVIKFLMPSS--------RLSEIMDKN 249 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~-~~~~~~~~i~~~l~~~~--------~~~~~~~~~ 249 (824)
-.-++|.|..|+|||||+..+.+... +.+-+.++++- +.+.. .+.++..++...=.... +.+.....-
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~l--iGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAG--VGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEc--CCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 45789999999999999988877422 22457777777 76654 33455555554321111 111111112
Q ss_pred HHHHHHHHHHhc---CCCeEEEEEecCCCh
Q 003387 250 YEMKKIILHEYL---MTKRYLIVIDDVWSI 276 (824)
Q Consensus 250 ~~~~~~~l~~~L---~~kr~LlVlDdv~~~ 276 (824)
....+..+.+++ +++++|+++||+-..
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccchHH
Confidence 233345566666 389999999999543
No 313
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.96 E-value=0.074 Score=53.46 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 003387 181 VVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~ 201 (824)
+|||.|..|+||||+|+.+.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 314
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.96 E-value=0.018 Score=45.96 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 003387 181 VVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~ 201 (824)
+|+|.|..|+||||+|+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999887
No 315
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.12 Score=56.41 Aligned_cols=52 Identities=21% Similarity=0.310 Sum_probs=39.1
Q ss_pred CCCCCCceechhh---HHHHHHHHHcCC-------CCeEEEEEEcCCCChHHHHHHHHhCCc
Q 003387 152 SSKSRDTVGLDDR---MEELLDLLIEGP-------PQLSVVAILDSIGLDKTAFAGEAYNSS 203 (824)
Q Consensus 152 ~~~~~~~vGr~~~---~~~l~~~L~~~~-------~~~~vi~I~G~gGvGKTtLa~~v~~~~ 203 (824)
.+.-+++-|.|+. +++|+++|.+.. .=.+=|-.+|++|-|||-||++|....
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred ccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 3445677787664 567788887752 235678899999999999999999943
No 316
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.90 E-value=0.012 Score=34.89 Aligned_cols=19 Identities=37% Similarity=0.455 Sum_probs=9.6
Q ss_pred ccEEEeeCccCccCCccCC
Q 003387 523 LRVLDLGSLVLIQYPSGIE 541 (824)
Q Consensus 523 Lr~L~L~~~~i~~lp~~i~ 541 (824)
|++|+|++|.++.+|++|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554443
No 317
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.90 E-value=0.11 Score=50.58 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
-.+++|+|..|.|||||++.+..-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999983
No 318
>PRK10867 signal recognition particle protein; Provisional
Probab=94.87 E-value=0.096 Score=57.84 Aligned_cols=91 Identities=15% Similarity=0.103 Sum_probs=47.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCccccCC-CceeEEEECCCCCCCCHH--HHHHHHHHHhCCCCCcccccccCHHHHH
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYNSSYVKHY-FDCHAWITEPYSNEYDAD--QILDIVIKFLMPSSRLSEIMDKNYEMKK 254 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~-F~~~~wv~~~vs~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 254 (824)
...+|.++|.+|+||||.|..+.. ..... -..++.|+ ...+... +-++..+++.+..--.. ....+...+.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~--~l~~~~G~kV~lV~---~D~~R~aa~eQL~~~a~~~gv~v~~~-~~~~dp~~i~ 172 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK--YLKKKKKKKVLLVA---ADVYRPAAIEQLKTLGEQIGVPVFPS-GDGQDPVDIA 172 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH--HHHHhcCCcEEEEE---ccccchHHHHHHHHHHhhcCCeEEec-CCCCCHHHHH
Confidence 478999999999999998877766 33333 12344454 2223332 23334445444211000 0122344444
Q ss_pred HHHHHhcCCCeE-EEEEecCC
Q 003387 255 IILHEYLMTKRY-LIVIDDVW 274 (824)
Q Consensus 255 ~~l~~~L~~kr~-LlVlDdv~ 274 (824)
....+..+.+.| ++|+|-.-
T Consensus 173 ~~a~~~a~~~~~DvVIIDTaG 193 (433)
T PRK10867 173 KAALEEAKENGYDVVIVDTAG 193 (433)
T ss_pred HHHHHHHHhcCCCEEEEeCCC
Confidence 434444444445 67777665
No 319
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.85 E-value=0.061 Score=52.19 Aligned_cols=34 Identities=18% Similarity=0.041 Sum_probs=25.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEE
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWI 215 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv 215 (824)
-.+++|+|..|.|||||++.+... . ......+.+
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~--~-~~~~G~i~~ 59 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGL--E-EPDSGSILI 59 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--C-CCCceEEEE
Confidence 469999999999999999999873 2 223445554
No 320
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.82 E-value=0.11 Score=55.78 Aligned_cols=45 Identities=20% Similarity=0.186 Sum_probs=35.8
Q ss_pred ceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 003387 158 TVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 158 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
++|....+.++.+.+..-...-.-|-|+|..|.||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 468888888888887764333456789999999999999999873
No 321
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.81 E-value=0.099 Score=53.31 Aligned_cols=102 Identities=19% Similarity=0.104 Sum_probs=61.7
Q ss_pred HHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCc---
Q 003387 166 EELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRL--- 242 (824)
Q Consensus 166 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~--- 242 (824)
..+-++|..+=..-.++.|+|.+|+||||+|.++... ..+ .=..++|++ ..+. ..++.+++ ++++-....
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~-~~~-~g~~~~y~~--~e~~--~~~~~~~~-~~~g~~~~~~~~ 84 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYG-ALK-QGKKVYVIT--TENT--SKSYLKQM-ESVKIDISDFFL 84 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHH-HHh-CCCEEEEEE--cCCC--HHHHHHHH-HHCCCChhHHHh
Confidence 3444555555455789999999999999999998542 222 234678888 6554 44555543 333321100
Q ss_pred ----c-------c--ccccCHHHHHHHHHHhcCC-CeEEEEEecCC
Q 003387 243 ----S-------E--IMDKNYEMKKIILHEYLMT-KRYLIVIDDVW 274 (824)
Q Consensus 243 ----~-------~--~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~ 274 (824)
. . ....+.+.+...+.+.++. +.-++|+|.+-
T Consensus 85 ~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 85 WGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred CCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0 0 0122345677777777754 55589999976
No 322
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.78 E-value=0.17 Score=47.36 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 003387 181 VVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~ 201 (824)
||.|+|.+|.||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999887
No 323
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.78 E-value=0.12 Score=53.10 Aligned_cols=102 Identities=15% Similarity=0.114 Sum_probs=55.9
Q ss_pred eEEEEEEcCCCChHHHHH-HHHhCCccccCCCcee-EEEECCCCCCC-CHHHHHHHHHHHhCCCCCcc--cccccCHHH-
Q 003387 179 LSVVAILDSIGLDKTAFA-GEAYNSSYVKHYFDCH-AWITEPYSNEY-DADQILDIVIKFLMPSSRLS--EIMDKNYEM- 252 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa-~~v~~~~~~~~~F~~~-~wv~~~vs~~~-~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~- 252 (824)
-.-++|.|..|+|||+|| +.+.+. . .-+.+ +++- +.+.. .+.++.+++.+.=......- ...++....
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~--~--~~~v~~V~~~--iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQ--K--GKKVYCIYVA--IGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHh--c--CCCeEEEEEe--cccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 457899999999999995 667662 2 23444 5555 55554 34455555554321110000 001111111
Q ss_pred -----HHHHHHHhc--CCCeEEEEEecCCCh-hhHHHHHhhC
Q 003387 253 -----KKIILHEYL--MTKRYLIVIDDVWSI-DMWDVIQEIL 286 (824)
Q Consensus 253 -----~~~~l~~~L--~~kr~LlVlDdv~~~-~~~~~l~~~~ 286 (824)
.+..+.+++ ++|.+|+|+||+-.. ..|.++...+
T Consensus 143 ~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEisl~~ 184 (274)
T cd01132 143 YLAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMSLLL 184 (274)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHHHHhc
Confidence 123333333 589999999999765 4566665443
No 324
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.77 E-value=0.14 Score=59.27 Aligned_cols=49 Identities=18% Similarity=0.117 Sum_probs=40.5
Q ss_pred CCCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 003387 154 KSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
....++|....+.++.+.+..-...-.-|-|+|..|+|||++|+.|++.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 4568999999999999988764333445679999999999999999984
No 325
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.74 E-value=0.13 Score=52.82 Aligned_cols=104 Identities=15% Similarity=0.080 Sum_probs=60.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccc--cCCCceeEEEECCCCCCC-CHHHHHHHHHHHhCCCC--------Ccccccc
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYV--KHYFDCHAWITEPYSNEY-DADQILDIVIKFLMPSS--------RLSEIMD 247 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~--~~~F~~~~wv~~~vs~~~-~~~~~~~~i~~~l~~~~--------~~~~~~~ 247 (824)
-.-++|.|-.|+|||||+..+.++..+ +..-+.++++- +.+.. ++.++..++...=.... +.+....
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~--IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r 146 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAA--MGITMEDARFFKDDFEETGALERVVLFLNLANDPTIER 146 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEE--eccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHH
Confidence 357899999999999999998885331 12346777877 76654 44556666555321111 0000111
Q ss_pred cCHHHHHHHHHHhc---CCCeEEEEEecCCCh-hhHHHHHh
Q 003387 248 KNYEMKKIILHEYL---MTKRYLIVIDDVWSI-DMWDVIQE 284 (824)
Q Consensus 248 ~~~~~~~~~l~~~L---~~kr~LlVlDdv~~~-~~~~~l~~ 284 (824)
.-..-....+.+++ ++|++|+++||+-.. ..+.++..
T Consensus 147 ~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A~A~rEisl 187 (276)
T cd01135 147 IITPRMALTTAEYLAYEKGKHVLVILTDMTNYAEALREISA 187 (276)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEEcChhHHHHHHHHHHh
Confidence 11122233455555 378999999999754 34555543
No 326
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.73 E-value=0.19 Score=54.27 Aligned_cols=88 Identities=20% Similarity=0.153 Sum_probs=49.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCC--ceeEEEECCCCC-CCCHHHHHHHHHHHhCCCCCcccccccCHHHHHH
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYF--DCHAWITEPYSN-EYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKI 255 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F--~~~~wv~~~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 255 (824)
-.++.++|+.|+||||++.++.. +....+ ..+..++ ... .....+-++...+.++.... ...+..++..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~--~~~~~~G~~~V~lit--~D~~R~ga~EqL~~~a~~~gv~~~----~~~~~~~l~~ 208 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA--RCVMRFGASKVALLT--TDSYRIGGHEQLRIFGKILGVPVH----AVKDGGDLQL 208 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--HHHHhcCCCeEEEEe--cccccccHHHHHHHHHHHcCCceE----ecCCcccHHH
Confidence 46999999999999999999987 332223 3455665 221 22334455555555554221 1122223333
Q ss_pred HHHHhcCCCeEEEEEecCCCh
Q 003387 256 ILHEYLMTKRYLIVIDDVWSI 276 (824)
Q Consensus 256 ~l~~~L~~kr~LlVlDdv~~~ 276 (824)
.+. .+.++ =+|++|..-..
T Consensus 209 ~l~-~l~~~-DlVLIDTaG~~ 227 (374)
T PRK14722 209 ALA-ELRNK-HMVLIDTIGMS 227 (374)
T ss_pred HHH-HhcCC-CEEEEcCCCCC
Confidence 333 34455 45558988543
No 327
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.67 E-value=0.07 Score=56.53 Aligned_cols=31 Identities=10% Similarity=-0.018 Sum_probs=26.3
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCCccccCCC
Q 003387 177 PQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYF 209 (824)
Q Consensus 177 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F 209 (824)
...+.++|+|++|.|||.+|+++++ +..-.|
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~--elg~~~ 176 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFK--KMGIEP 176 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHH--HcCCCe
Confidence 4579999999999999999999999 554443
No 328
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.67 E-value=0.2 Score=58.81 Aligned_cols=87 Identities=23% Similarity=0.194 Sum_probs=46.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCC--HHHHHHHHHHHhCCCCCcccccccCHHHHHHH
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYD--ADQILDIVIKFLMPSSRLSEIMDKNYEMKKII 256 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 256 (824)
-+||+++|+.|+||||.+.++.........-..+..++ . ..+. ..+-++...+.++.... ...+..++...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit--~-Dt~RigA~eQL~~~a~~~gvpv~----~~~~~~~l~~a 257 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLT--T-DSFRIGALEQLRIYGRILGVPVH----AVKDAADLRFA 257 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEec--C-cccchHHHHHHHHHHHhCCCCcc----ccCCHHHHHHH
Confidence 47999999999999999998887321111123455555 2 2333 23444444554443221 12234444444
Q ss_pred HHHhcCCCeEEEEEecCC
Q 003387 257 LHEYLMTKRYLIVIDDVW 274 (824)
Q Consensus 257 l~~~L~~kr~LlVlDdv~ 274 (824)
+. .++++. +|++|=.-
T Consensus 258 l~-~~~~~D-~VLIDTAG 273 (767)
T PRK14723 258 LA-ALGDKH-LVLIDTVG 273 (767)
T ss_pred HH-HhcCCC-EEEEeCCC
Confidence 43 233333 55566654
No 329
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.66 E-value=0.11 Score=57.17 Aligned_cols=99 Identities=13% Similarity=0.147 Sum_probs=54.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCC-CCHHHHHHHHHHHhCCC--------CCcccccccC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNE-YDADQILDIVIKFLMPS--------SRLSEIMDKN 249 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~-~~~~~~~~~i~~~l~~~--------~~~~~~~~~~ 249 (824)
-..++|+|..|+|||||++.+.+.. ..+..+++. +.+. ..+.+.+.+....=... .+.+.....-
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~--iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~ 228 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVL--IGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVR 228 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEE--ECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHH
Confidence 5689999999999999999999832 234445544 4433 33445555543211000 0001011111
Q ss_pred HHHHHHHHHHhc--CCCeEEEEEecCCCh-hhHHHHH
Q 003387 250 YEMKKIILHEYL--MTKRYLIVIDDVWSI-DMWDVIQ 283 (824)
Q Consensus 250 ~~~~~~~l~~~L--~~kr~LlVlDdv~~~-~~~~~l~ 283 (824)
....+..+.+++ +++++||++||+-.- ....++.
T Consensus 229 a~~~a~tiAEyfrd~G~~VLl~~Dsltr~A~A~REis 265 (433)
T PRK07594 229 ALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIA 265 (433)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCHHHHHHHHHHHH
Confidence 122233445555 579999999999654 2334443
No 330
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.66 E-value=0.45 Score=51.90 Aligned_cols=89 Identities=11% Similarity=0.053 Sum_probs=50.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCcccc--CCCceeEEEECCCCCCCCHHHH--HHHHHHHhCCCCCcccccccCHHHH
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYNSSYVK--HYFDCHAWITEPYSNEYDADQI--LDIVIKFLMPSSRLSEIMDKNYEMK 253 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~--~~F~~~~wv~~~vs~~~~~~~~--~~~i~~~l~~~~~~~~~~~~~~~~~ 253 (824)
..++|.++|..|+||||.+..+....... ..=..+..++ . ..|..... ++..++.++..- ....+...+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit--~-Dt~R~aa~eQL~~~a~~lgvpv----~~~~~~~~l 245 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIIT--I-DNYRIGAKKQIQTYGDIMGIPV----KAIESFKDL 245 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEe--c-cCccHHHHHHHHHHhhcCCcce----EeeCcHHHH
Confidence 36799999999999999998887632211 1123455565 3 34444332 444444444321 122234445
Q ss_pred HHHHHHhcCCCeEEEEEecCCC
Q 003387 254 KIILHEYLMTKRYLIVIDDVWS 275 (824)
Q Consensus 254 ~~~l~~~L~~kr~LlVlDdv~~ 275 (824)
...+.+. .+.=+|++|..-.
T Consensus 246 ~~~L~~~--~~~DlVLIDTaGr 265 (388)
T PRK12723 246 KEEITQS--KDFDLVLVDTIGK 265 (388)
T ss_pred HHHHHHh--CCCCEEEEcCCCC
Confidence 4444443 3455888888854
No 331
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.64 E-value=0.055 Score=49.17 Aligned_cols=82 Identities=15% Similarity=0.206 Sum_probs=35.3
Q ss_pred hhhcccCcccEEEeeCccCccCCcc-CCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchh-hhcccc
Q 003387 515 KFCGMFKLLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADE-FWKMNK 592 (824)
Q Consensus 515 ~~~~~~~~Lr~L~L~~~~i~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~ 592 (824)
..|..++.|+.+.+.. .+..++.. +..+.+|+.+.+..+ +..++...|..+.+|+.+.+.. .+..++.. +..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 4555566666666653 34444332 444556666666553 5555555555565666666643 34444332 344556
Q ss_pred CceecCC
Q 003387 593 LRHLNFG 599 (824)
Q Consensus 593 L~~L~L~ 599 (824)
|+.+++.
T Consensus 83 l~~i~~~ 89 (129)
T PF13306_consen 83 LKNIDIP 89 (129)
T ss_dssp ECEEEET
T ss_pred ccccccC
Confidence 6666543
No 332
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=94.62 E-value=0.28 Score=52.76 Aligned_cols=44 Identities=11% Similarity=-0.072 Sum_probs=32.4
Q ss_pred Ccee-chhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 157 DTVG-LDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 157 ~~vG-r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.++| -+.-++.+.+.+..+. -....-++|+.|+||||+|+.+.+
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~ 50 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAK 50 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 4566 5666777777776543 345678999999999999988755
No 333
>PRK14974 cell division protein FtsY; Provisional
Probab=94.60 E-value=0.2 Score=53.44 Aligned_cols=91 Identities=13% Similarity=0.073 Sum_probs=47.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCccccC-CCceeEEEECCCCCCCCHH--HHHHHHHHHhCCCCCcccccccCHHHH-
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYNSSYVKH-YFDCHAWITEPYSNEYDAD--QILDIVIKFLMPSSRLSEIMDKNYEMK- 253 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~F~~~~wv~~~vs~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~- 253 (824)
+..+|.++|+.|+||||++..+.. .... .+ .++.+. ...+... +-++..+..++...... ....+....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~--~l~~~g~-~V~li~---~Dt~R~~a~eqL~~~a~~lgv~v~~~-~~g~dp~~v~ 211 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY--YLKKNGF-SVVIAA---GDTFRAGAIEQLEEHAERLGVKVIKH-KYGADPAAVA 211 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH--HHHHcCC-eEEEec---CCcCcHHHHHHHHHHHHHcCCceecc-cCCCCHHHHH
Confidence 478999999999999998877776 3332 23 344454 3333332 33455566655321100 111222222
Q ss_pred HHHHHHhc-CCCeEEEEEecCCCh
Q 003387 254 KIILHEYL-MTKRYLIVIDDVWSI 276 (824)
Q Consensus 254 ~~~l~~~L-~~kr~LlVlDdv~~~ 276 (824)
.+.+...- .+.. +|++|-.-..
T Consensus 212 ~~ai~~~~~~~~D-vVLIDTaGr~ 234 (336)
T PRK14974 212 YDAIEHAKARGID-VVLIDTAGRM 234 (336)
T ss_pred HHHHHHHHhCCCC-EEEEECCCcc
Confidence 23333222 2333 8888988543
No 334
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.59 E-value=0.081 Score=57.31 Aligned_cols=77 Identities=12% Similarity=0.156 Sum_probs=49.8
Q ss_pred CCceechhhHHHHHHHHHcC------------CCCeEEEEEEcCCCChHHHHHHHHhCCccccCCC---ceeEEEECCCC
Q 003387 156 RDTVGLDDRMEELLDLLIEG------------PPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYF---DCHAWITEPYS 220 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F---~~~~wv~~~vs 220 (824)
..++|.++.++.+.-.+... +...+-|-++|++|+||||+|+.+.. .....| +..-++. ..
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~--~l~~~fi~vdat~~~e--~g 87 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPFIKVEATKFTE--VG 87 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH--HhCCeEEEeecceeec--CC
Confidence 56888888888876655531 11246788999999999999999988 555444 2222222 11
Q ss_pred -CCCCHHHHHHHHHHHh
Q 003387 221 -NEYDADQILDIVIKFL 236 (824)
Q Consensus 221 -~~~~~~~~~~~i~~~l 236 (824)
...+..++++.+....
T Consensus 88 ~vG~dvE~i~r~l~e~A 104 (441)
T TIGR00390 88 YVGRDVESMVRDLTDAA 104 (441)
T ss_pred cccCCHHHHHHHHHHHH
Confidence 1235667666665554
No 335
>PRK09099 type III secretion system ATPase; Provisional
Probab=94.58 E-value=0.095 Score=57.81 Aligned_cols=94 Identities=12% Similarity=0.126 Sum_probs=51.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCC--------CcccccccC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSS--------RLSEIMDKN 249 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~--------~~~~~~~~~ 249 (824)
.-..++|.|..|+|||||++.+....... ..+++.. -.+.-.+.++.+.+...-.... +.+.....-
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~i--Ger~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~ 236 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALI--GERGREVREFIELILGEDGMARSVVVCATSDRSSIERAK 236 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEE--ccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHH
Confidence 35689999999999999999998743221 2344443 2222334444444443321110 101011111
Q ss_pred HHHHHHHHHHhc--CCCeEEEEEecCCCh
Q 003387 250 YEMKKIILHEYL--MTKRYLIVIDDVWSI 276 (824)
Q Consensus 250 ~~~~~~~l~~~L--~~kr~LlVlDdv~~~ 276 (824)
....+..+.+++ ++|.+|+++||+-..
T Consensus 237 a~~~a~tiAEyfrd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 237 AAYVATAIAEYFRDRGLRVLLMMDSLTRF 265 (441)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 122233445555 579999999999654
No 336
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.58 E-value=0.043 Score=49.81 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 003387 163 DRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 163 ~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
++.+++-+.|...-..-.+|.+.|.-|.||||+++.+.+.
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4455555655543223458999999999999999999984
No 337
>PRK05922 type III secretion system ATPase; Validated
Probab=94.58 E-value=0.16 Score=55.86 Aligned_cols=99 Identities=10% Similarity=0.118 Sum_probs=53.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCC-CCHHHHHHHHHHHhCCCCCc--------ccccccC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNE-YDADQILDIVIKFLMPSSRL--------SEIMDKN 249 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~-~~~~~~~~~i~~~l~~~~~~--------~~~~~~~ 249 (824)
-..++|+|..|+|||||.+.+.+.. . -+..+.+- +.+. -.+.+.+.+........... +.....-
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~--~--~d~gvi~l--iGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGS--K--STINVIAL--IGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccC--C--CCceEEEE--eCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence 4568999999999999999999832 2 23333332 2222 23344555544333221110 0011111
Q ss_pred HHHHHHHHHHhc--CCCeEEEEEecCCCh-hhHHHHH
Q 003387 250 YEMKKIILHEYL--MTKRYLIVIDDVWSI-DMWDVIQ 283 (824)
Q Consensus 250 ~~~~~~~l~~~L--~~kr~LlVlDdv~~~-~~~~~l~ 283 (824)
....+..+.+++ +++++|+++||+-.. ....++.
T Consensus 231 a~~~a~tiAEyfrd~G~~VLl~~DslTR~A~A~REis 267 (434)
T PRK05922 231 AGRAAMTIAEYFRDQGHRVLFIMDSLSRWIAALQEVA 267 (434)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHHH
Confidence 222334455555 589999999999654 2344443
No 338
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=94.58 E-value=0.065 Score=54.36 Aligned_cols=76 Identities=21% Similarity=0.261 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhhcccccccchhchHHHHHHHHHHHHHHHHHccccchhhHHHhhhcccc-ccCChhHHHHHHHHHHHhhh
Q 003387 5 FRLFSERLRRVLAGEEVTLPDAAKQPIQNLHAEVEIVTSWLSEFEDDISLLLFEKMAEE-ESHDPDLATVMDEINWFTYE 83 (824)
Q Consensus 5 ~~~~~~kl~~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~~~~~~~~~~~~~~a~~-~~~~~~~~~wl~~l~~~~~~ 83 (824)
+..++..|-.... +....+.-++.+++-++.+++.+|.||+++ ++. ...-...+....++...||+
T Consensus 298 VdFlL~NLkdfq~-rysdSlaflKnQiqvIQ~elesLqpFLk~V------------~ee~~nkh~~~ed~a~~ii~kAye 364 (402)
T PF12061_consen 298 VDFLLKNLKDFQG-RYSDSLAFLKNQIQVIQTELESLQPFLKHV------------VEEPHNKHDTNEDCATQIIRKAYE 364 (402)
T ss_pred HHHHHhhHHHHhc-cccchHHHHHHHHHHHHHHHHHhhHHHHHH------------HhccchhhhhhhhHHHHHHHHHhh
Confidence 5677888888877 788888889999999999999999999993 555 33233489999999999999
Q ss_pred hHHHHHHhHH
Q 003387 84 SEKVIDTFIN 93 (824)
Q Consensus 84 ~ed~ld~~~~ 93 (824)
+|.++|-+-.
T Consensus 365 vEYVVDaCi~ 374 (402)
T PF12061_consen 365 VEYVVDACIS 374 (402)
T ss_pred eeeeeehhhc
Confidence 9999998743
No 339
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.57 E-value=0.078 Score=58.20 Aligned_cols=93 Identities=13% Similarity=0.091 Sum_probs=49.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCC--------CcccccccCH
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSS--------RLSEIMDKNY 250 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~--------~~~~~~~~~~ 250 (824)
-..++|+|..|+|||||++.+.+. .+. ...++... --+.-.+.++.++.+..-+... +.+.....-.
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~--~~~-~~gvi~~i--Ger~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARN--TDA-DVVVIALV--GERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCC--CCC-CEEEEEEE--eeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 468999999999999999999983 222 22233222 1222234444444433221111 1000111111
Q ss_pred HHHHHHHHHhc--CCCeEEEEEecCCCh
Q 003387 251 EMKKIILHEYL--MTKRYLIVIDDVWSI 276 (824)
Q Consensus 251 ~~~~~~l~~~L--~~kr~LlVlDdv~~~ 276 (824)
...+..+.+++ +++.+||++||+-..
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 22233455555 579999999999654
No 340
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.56 E-value=0.083 Score=58.35 Aligned_cols=102 Identities=10% Similarity=0.129 Sum_probs=58.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCC-CHHHHHHHHHHHhCCC--------CCcccccccC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEY-DADQILDIVIKFLMPS--------SRLSEIMDKN 249 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~-~~~~~~~~i~~~l~~~--------~~~~~~~~~~ 249 (824)
-.-++|.|..|+|||||+..+..+.... +=+.++++- +.+.. .+.++.+++...=... .+.+......
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~l--iGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAG--VGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEE--eccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 4578999999999999999876532111 113566666 65543 3445666655432111 1111111111
Q ss_pred HHHHHHHHHHhc---CCCeEEEEEecCCCh-hhHHHHH
Q 003387 250 YEMKKIILHEYL---MTKRYLIVIDDVWSI-DMWDVIQ 283 (824)
Q Consensus 250 ~~~~~~~l~~~L---~~kr~LlVlDdv~~~-~~~~~l~ 283 (824)
....+..+.+++ ++|.+||++||+-.- ..+.++.
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR~A~A~REis 258 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFRFTQAGSEVS 258 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHHHHHHHHHHH
Confidence 223344566666 679999999999653 3344444
No 341
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.55 E-value=0.2 Score=49.45 Aligned_cols=114 Identities=18% Similarity=0.196 Sum_probs=71.4
Q ss_pred CCCCceechhhHHHHHHHHH---cCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHH
Q 003387 154 KSRDTVGLDDRMEELLDLLI---EGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILD 230 (824)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~L~---~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~ 230 (824)
+-..++|.|..++.+++=-. .+. ...-|-.||.-|.||+.|++++.+ ++....-.-+ . |++.
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~-pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glrLV--E--V~k~-------- 122 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGL-PANNVLLWGARGTGKSSLVKALLN--EYADEGLRLV--E--VDKE-------- 122 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCC-cccceEEecCCCCChHHHHHHHHH--HHHhcCCeEE--E--EcHH--------
Confidence 34578999999988876332 232 345678999999999999999999 5555544433 2 3221
Q ss_pred HHHHHhCCCCCcccccccCHHHHHHHHHHhcC--CCeEEEEEecCCCh---hhHHHHHhhCCCC---CCCcEEEEEech
Q 003387 231 IVIKFLMPSSRLSEIMDKNYEMKKIILHEYLM--TKRYLIVIDDVWSI---DMWDVIQEILPDN---QNGSRVLITLTD 301 (824)
Q Consensus 231 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~---~~~~~l~~~~~~~---~~gs~ilvTtR~ 301 (824)
+... ...|.+.|+ .+||.|..||..-+ +.+..+...+..+ .+...++..|.+
T Consensus 123 ------------------dl~~-Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 123 ------------------DLAT-LPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred ------------------HHhh-HHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 1111 123333443 48999999999633 4677777777643 233444444443
No 342
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.52 E-value=0.29 Score=54.09 Aligned_cols=91 Identities=13% Similarity=0.072 Sum_probs=47.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCccccC-CCceeEEEECCCCCCCCH--HHHHHHHHHHhCCCCCcccccccCHHHHH
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYNSSYVKH-YFDCHAWITEPYSNEYDA--DQILDIVIKFLMPSSRLSEIMDKNYEMKK 254 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~F~~~~wv~~~vs~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 254 (824)
...++.++|..|+||||.|..+.. .... .-..++-|+ .. .+.. .+-++...++++..... .....+.....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~--~l~~~~g~kV~lV~--~D-~~R~~a~~QL~~~a~~~gvp~~~-~~~~~~P~~i~ 171 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY--YLKKKQGKKVLLVA--CD-LYRPAAIEQLKVLGQQVGVPVFA-LGKGQSPVEIA 171 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH--HHHHhCCCeEEEEe--cc-ccchHHHHHHHHHHHhcCCceEe-cCCCCCHHHHH
Confidence 368999999999999999888776 3221 112344444 21 2222 23344444544432110 01122344444
Q ss_pred HHHHHhcCCCeE-EEEEecCC
Q 003387 255 IILHEYLMTKRY-LIVIDDVW 274 (824)
Q Consensus 255 ~~l~~~L~~kr~-LlVlDdv~ 274 (824)
....+....+.| +||+|-.-
T Consensus 172 ~~al~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 172 RRALEYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHHHHHhcCCCEEEEeCCC
Confidence 444444444445 77777765
No 343
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.51 E-value=0.16 Score=51.88 Aligned_cols=125 Identities=17% Similarity=0.238 Sum_probs=73.4
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEE-EECCCCCCCCHHHHHHHHHH
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAW-ITEPYSNEYDADQILDIVIK 234 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~w-v~~~vs~~~~~~~~~~~i~~ 234 (824)
++++|-+..+.-+.+.+... ...+.-.+|++|-|||+-|.++...---.+.|.+++. .+ +|..-.+. + .+
T Consensus 36 de~~gQe~vV~~L~~a~~~~--~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln--aSderGis-v----vr 106 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRR--ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN--ASDERGIS-V----VR 106 (346)
T ss_pred HhhcchHHHHHHHHHHHhhc--CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc--cccccccc-c----hh
Confidence 57889999999999888873 4778889999999999999887763212355655442 22 44332211 0 00
Q ss_pred HhCCCCCcccccccCHHHHHHHHHHhc--CCCe-EEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEe
Q 003387 235 FLMPSSRLSEIMDKNYEMKKIILHEYL--MTKR-YLIVIDDVWSI--DMWDVIQEILPDNQNGSRVLITL 299 (824)
Q Consensus 235 ~l~~~~~~~~~~~~~~~~~~~~l~~~L--~~kr-~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTt 299 (824)
. ...+.+.+.....+.. ..++ =.+|||+++.. +.|..+..-..+....+|.+..+
T Consensus 107 ~----------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIc 166 (346)
T KOG0989|consen 107 E----------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILIC 166 (346)
T ss_pred h----------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEc
Confidence 0 0111111111111111 0134 36788999875 67999988777655555544433
No 344
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.49 E-value=0.047 Score=53.62 Aligned_cols=43 Identities=14% Similarity=0.018 Sum_probs=27.2
Q ss_pred EEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHH
Q 003387 181 VVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDAD 226 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~ 226 (824)
.|+|+|-||+||||+|..+... -..++=..+.=|+ ...+++..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~-l~~~~~~~VLvVD--aDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKR-LLSKGGYNVLVVD--ADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHH-HHhcCCceEEEEe--CCCCCChH
Confidence 6899999999999999884441 2222212344455 55555543
No 345
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=94.49 E-value=0.37 Score=54.83 Aligned_cols=134 Identities=15% Similarity=0.074 Sum_probs=85.1
Q ss_pred CCceechhhHHHHHHHHHc---CCCCeEEEEEEcCCCChHHHHHHHHhCCc------cccCCCceeEEEECCCCCCCCHH
Q 003387 156 RDTVGLDDRMEELLDLLIE---GPPQLSVVAILDSIGLDKTAFAGEAYNSS------YVKHYFDCHAWITEPYSNEYDAD 226 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGvGKTtLa~~v~~~~------~~~~~F~~~~wv~~~vs~~~~~~ 226 (824)
..+-+|+.+..+|-..+.. .+..-..+-|.|.+|.|||..+..|.+.- .--..|+ .+.|. .-.-....
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveIN--gm~l~~~~ 472 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEIN--GLRLASPR 472 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEc--ceeecCHH
Confidence 4567899999999998865 22345599999999999999999998831 1123343 33343 44445688
Q ss_pred HHHHHHHHHhCCCCCcccccccCHHHHHHHHHHhcC-----CCeEEEEEecCCChhh-HHHHH-hhCCC-CCCCcEEEEE
Q 003387 227 QILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLM-----TKRYLIVIDDVWSIDM-WDVIQ-EILPD-NQNGSRVLIT 298 (824)
Q Consensus 227 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~-----~kr~LlVlDdv~~~~~-~~~l~-~~~~~-~~~gs~ilvT 298 (824)
++...|...+.+... ......+.|..+.. .+..++++|+++..-. =+++. ..|.| ..++||++|-
T Consensus 473 ~~Y~~I~~~lsg~~~-------~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi 545 (767)
T KOG1514|consen 473 EIYEKIWEALSGERV-------TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVI 545 (767)
T ss_pred HHHHHHHHhcccCcc-------cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEE
Confidence 999999999988543 11223333333332 3578888898864311 11222 22333 4568888766
Q ss_pred e
Q 003387 299 L 299 (824)
Q Consensus 299 t 299 (824)
+
T Consensus 546 ~ 546 (767)
T KOG1514|consen 546 A 546 (767)
T ss_pred E
Confidence 4
No 346
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.46 E-value=0.046 Score=53.40 Aligned_cols=117 Identities=12% Similarity=0.041 Sum_probs=56.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHh
Q 003387 181 VVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEY 260 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 260 (824)
|+.|.|..|.||||+.+.+.-... -.+-.+.+|.. ...- ....+++..++...... ........-...+...
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~-la~~G~~v~a~--~~~~----~~~d~il~~~~~~d~~~-~~~s~fs~~~~~l~~~ 72 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVI-MAQIGSFVPAE--SAEL----PVFDRIFTRIGASDSLA-QGLSTFMVEMKETANI 72 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHH-HHHhCCCeeeh--heEe----cccceEEEEeCCCCchh-ccccHHHHHHHHHHHH
Confidence 467999999999999999884211 11111111111 0000 00011111111111000 0011112222345555
Q ss_pred cCC--CeEEEEEecCCChhh-------HHHHHhhCCCCCCCcEEEEEechHHHHh
Q 003387 261 LMT--KRYLIVIDDVWSIDM-------WDVIQEILPDNQNGSRVLITLTDIRIII 306 (824)
Q Consensus 261 L~~--kr~LlVlDdv~~~~~-------~~~l~~~~~~~~~gs~ilvTtR~~~v~~ 306 (824)
+.. ++-|+++|..-...+ ...+...+.. ..|+.+|++|...++..
T Consensus 73 l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~ 126 (185)
T smart00534 73 LKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTK 126 (185)
T ss_pred HHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHH
Confidence 544 889999999965421 1122222222 23678999999988776
No 347
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.45 E-value=0.062 Score=53.45 Aligned_cols=88 Identities=14% Similarity=0.113 Sum_probs=50.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCC-CHHHHHHHHHHHhCCC--------CCcccccc---
Q 003387 180 SVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEY-DADQILDIVIKFLMPS--------SRLSEIMD--- 247 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~-~~~~~~~~i~~~l~~~--------~~~~~~~~--- 247 (824)
.-++|.|..|+|||+|++.+.++. . =+..+++- +.+.. .+.++.+++...=... .+.+....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~--~--~d~~V~~~--iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ--D--ADVVVYAL--IGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC--T--TTEEEEEE--ESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc--c--ccceeeee--ccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 468999999999999999998842 2 23346666 66543 4445555553321000 00000000
Q ss_pred -cCHHHHHHHHHHhcCCCeEEEEEecCCC
Q 003387 248 -KNYEMKKIILHEYLMTKRYLIVIDDVWS 275 (824)
Q Consensus 248 -~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 275 (824)
...-..++.+++ ++|.+|+++||+-.
T Consensus 90 ~~~a~t~AEyfrd--~G~dVlli~Dsltr 116 (215)
T PF00006_consen 90 PYTALTIAEYFRD--QGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHHHHHHHHH--TTSEEEEEEETHHH
T ss_pred hccchhhhHHHhh--cCCceeehhhhhHH
Confidence 001122334444 78999999999954
No 348
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=94.43 E-value=0.16 Score=56.02 Aligned_cols=99 Identities=12% Similarity=0.102 Sum_probs=54.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCC-CCHHHHHHHHHHHhCCCC--------CcccccccC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNE-YDADQILDIVIKFLMPSS--------RLSEIMDKN 249 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~-~~~~~~~~~i~~~l~~~~--------~~~~~~~~~ 249 (824)
-..++|+|..|+|||||++.+.+.. ..+.++... +... .++.++...+...-.... +.+.....-
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~----~~dv~V~g~--Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~ 241 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFT----EADIIVVGL--IGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLR 241 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC----CCCEEEEEE--eCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHH
Confidence 4579999999999999999998732 123434433 3332 244455555544322211 100011111
Q ss_pred HHHHHHHHHHhc--CCCeEEEEEecCCCh-hhHHHHH
Q 003387 250 YEMKKIILHEYL--MTKRYLIVIDDVWSI-DMWDVIQ 283 (824)
Q Consensus 250 ~~~~~~~l~~~L--~~kr~LlVlDdv~~~-~~~~~l~ 283 (824)
....+..+.+++ +++++||++||+-.. ....++.
T Consensus 242 a~~~a~aiAEyfrd~G~~VLl~~DslTR~A~A~REis 278 (451)
T PRK05688 242 AAMYCTRIAEYFRDKGKNVLLLMDSLTRFAQAQREIA 278 (451)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecchhHHHHHHHHHH
Confidence 122233444444 589999999999654 3344444
No 349
>PRK03839 putative kinase; Provisional
Probab=94.41 E-value=0.025 Score=55.02 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 003387 181 VVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.|.|+|++|+||||+|+.+.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999998
No 350
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.41 E-value=0.063 Score=59.95 Aligned_cols=103 Identities=12% Similarity=0.090 Sum_probs=55.7
Q ss_pred HHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccC-CCceeEEEECCCCCCCCHHHHHHHHHHHhCC-----CC
Q 003387 167 ELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKH-YFDCHAWITEPYSNEYDADQILDIVIKFLMP-----SS 240 (824)
Q Consensus 167 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~-----~~ 240 (824)
+++++|..-. .-.-.+|+|..|+|||||++.|.| .+.. +=++.++|. .|.+.+..- .+|-+.+.. ..
T Consensus 405 RvIDll~PIG-kGQR~LIvgpp~aGKTtLL~~IAn--~i~~n~~~~~~ivv-LIgERpeEV---tdm~rsVkgeVVasT~ 477 (672)
T PRK12678 405 RVIDLIMPIG-KGQRGLIVSPPKAGKTTILQNIAN--AITTNNPECHLMVV-LVDERPEEV---TDMQRSVKGEVIASTF 477 (672)
T ss_pred eeeeeecccc-cCCEeEEeCCCCCCHHHHHHHHHH--HHhhcCCCeEEEEE-EEeCchhhH---HHHHHhccceEEEECC
Confidence 3455444311 234679999999999999999998 4422 223333332 034333222 223333321 11
Q ss_pred CcccccccCHHHHHHHHHHhc--CCCeEEEEEecCCCh
Q 003387 241 RLSEIMDKNYEMKKIILHEYL--MTKRYLIVIDDVWSI 276 (824)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~ 276 (824)
+.+.....-...+...+.+++ +++.+||++|++-..
T Consensus 478 D~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 478 DRPPSDHTTVAELAIERAKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchHH
Confidence 111111222344455566666 679999999999644
No 351
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.38 E-value=0.18 Score=51.39 Aligned_cols=61 Identities=15% Similarity=0.183 Sum_probs=40.4
Q ss_pred HHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHH
Q 003387 166 EELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIV 232 (824)
Q Consensus 166 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i 232 (824)
+.+-++|..+=..-.++-|.|.+|.|||++|.++... .. ..-+.++||+ ... +..++.+.+
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~-~~-~~ge~~lyvs--~ee--~~~~i~~~~ 68 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGIYVA--LEE--HPVQVRRNM 68 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHH-HH-HcCCcEEEEE--eeC--CHHHHHHHH
Confidence 3344556556456789999999999999999876441 12 2345678887 544 455555543
No 352
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=94.37 E-value=0.32 Score=47.99 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q 003387 181 VVAILDSIGLDKTAFAGEAY 200 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~ 200 (824)
+++|+|..|.|||||+++++
T Consensus 24 ~~~i~G~nGsGKStll~al~ 43 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 88999999999999999986
No 353
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.34 E-value=0.14 Score=52.74 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 003387 181 VVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.|.++|++|+||||+|+.+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 354
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.33 E-value=0.026 Score=54.58 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
..+|+|-||=|+||||||+.+.++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 578999999999999999999993
No 355
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.33 E-value=0.32 Score=45.52 Aligned_cols=22 Identities=9% Similarity=0.247 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 003387 181 VVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
+|.|+|++|+||||+|+.+.+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999883
No 356
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.32 E-value=0.17 Score=60.96 Aligned_cols=48 Identities=23% Similarity=0.210 Sum_probs=36.8
Q ss_pred CCCCceechhhHHHHHHHHHc-----------CCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 154 KSRDTVGLDDRMEELLDLLIE-----------GPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.-.++.|.+..++.|.+.+.. +-...+-|-++|++|.|||++|+++.+
T Consensus 451 ~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~ 509 (733)
T TIGR01243 451 RWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVAT 509 (733)
T ss_pred chhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 345688988888888776642 112345578899999999999999999
No 357
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.31 E-value=0.068 Score=53.81 Aligned_cols=119 Identities=13% Similarity=0.093 Sum_probs=58.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHHH
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIIL 257 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 257 (824)
+.+++.|.|..|.||||+.+.+.-..- .+..-++|. ... . .-.+...++..++..+... ........-...+
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~~---la~~g~~vp--a~~-~-~~~~~~~il~~~~l~d~~~-~~lS~~~~e~~~~ 100 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIVL---MAQIGCFVP--CDS-A-DIPIVDCILARVGASDSQL-KGVSTFMAEMLET 100 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH---HHHhCCCcC--ccc-E-EEeccceeEeeeccccchh-cCcChHHHHHHHH
Confidence 367999999999999999888664210 111112222 111 0 0111222333332221100 0011112222333
Q ss_pred HHhc--CCCeEEEEEecCC---Chh-----hHHHHHhhCCCCCCCcEEEEEechHHHHh
Q 003387 258 HEYL--MTKRYLIVIDDVW---SID-----MWDVIQEILPDNQNGSRVLITLTDIRIII 306 (824)
Q Consensus 258 ~~~L--~~kr~LlVlDdv~---~~~-----~~~~l~~~~~~~~~gs~ilvTtR~~~v~~ 306 (824)
...+ ...+-|++||..- +.. .|..+ ..+.. ..|+.+|+||-..++..
T Consensus 101 a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il-~~l~~-~~~~~vlisTH~~el~~ 157 (222)
T cd03285 101 AAILKSATENSLIIIDELGRGTSTYDGFGLAWAIA-EYIAT-QIKCFCLFATHFHELTA 157 (222)
T ss_pred HHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHH-HHHHh-cCCCeEEEEechHHHHH
Confidence 3334 3578899999993 322 22222 22222 34788999998877665
No 358
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.28 E-value=0.029 Score=55.77 Aligned_cols=22 Identities=9% Similarity=-0.067 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+++|+|..|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 7999999999999999999984
No 359
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=94.23 E-value=0.45 Score=52.40 Aligned_cols=121 Identities=13% Similarity=0.111 Sum_probs=66.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCC--------CcccccccCH
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSS--------RLSEIMDKNY 250 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~--------~~~~~~~~~~ 250 (824)
-..++|+|..|+|||||++.+....+ . ...++... -.+...+.+...+.+..-+... +.+.....-.
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~~--~-~~gvI~~i--Gerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra 230 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNAK--A-DINVISLV--GERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRA 230 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCC--C-CeEEEEeC--CCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHH
Confidence 45889999999999999999988432 1 22333332 2233566666665554422211 1000111112
Q ss_pred HHHHHHHHHhc--CCCeEEEEEecCCCh-hhHHHHHhh---CCCCCCCcEEEEEechHHHHh
Q 003387 251 EMKKIILHEYL--MTKRYLIVIDDVWSI-DMWDVIQEI---LPDNQNGSRVLITLTDIRIII 306 (824)
Q Consensus 251 ~~~~~~l~~~L--~~kr~LlVlDdv~~~-~~~~~l~~~---~~~~~~gs~ilvTtR~~~v~~ 306 (824)
...+..+.+++ ++|.+||++||+-.. +...++... .|. .|--..+.|....++.
T Consensus 231 ~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~reisl~~~e~p~--~G~~~~~~s~l~~L~E 290 (432)
T PRK06793 231 AKLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPI--GGKTLLMESYMKKLLE 290 (432)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecchHHHHHHHHHHHHHhcCCCC--CCeeeeeeccchhHHH
Confidence 22333444444 479999999999765 334444433 232 2555566555555554
No 360
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.23 E-value=0.049 Score=57.52 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=33.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHH
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDI 231 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~ 231 (824)
.+++.+.|.|||||||+|.+..- ........++-|+ +....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvS--tDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVS--TDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEE--eCCCCchHhhhcc
Confidence 57899999999999999988554 3444445566665 5555555554443
No 361
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.23 E-value=0.035 Score=54.43 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
+..+|.|+|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999986
No 362
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.21 E-value=0.055 Score=53.61 Aligned_cols=120 Identities=12% Similarity=0.018 Sum_probs=59.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHHHH
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILH 258 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 258 (824)
.+++.|.|..|.||||+.+.+....-.. ..-++|. ... ... .+.+.|...++..+.... .......-..++.
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la---~~G~~vp--a~~-~~l-~~~d~I~~~~~~~d~~~~-~~S~fs~e~~~~~ 100 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMA---QIGCFVP--AEY-ATL-PIFNRLLSRLSNDDSMER-NLSTFASEMSETA 100 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHH---HcCCCcc--hhh-cCc-cChhheeEecCCccccch-hhhHHHHHHHHHH
Confidence 4789999999999999999886531111 1112222 110 111 223333333333211000 0000001111122
Q ss_pred Hhc--CCCeEEEEEecCCCh---hh----HHHHHhhCCCCCCCcEEEEEechHHHHhhc
Q 003387 259 EYL--MTKRYLIVIDDVWSI---DM----WDVIQEILPDNQNGSRVLITLTDIRIIISF 308 (824)
Q Consensus 259 ~~L--~~kr~LlVlDdv~~~---~~----~~~l~~~~~~~~~gs~ilvTtR~~~v~~~f 308 (824)
..+ ..++-|+++|..... .+ ...+...+.. .|+.+|+||-..+++..+
T Consensus 101 ~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~ 157 (204)
T cd03282 101 YILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAIL 157 (204)
T ss_pred HHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHh
Confidence 222 356789999998543 22 1122222322 278999999999888744
No 363
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.20 E-value=0.12 Score=56.83 Aligned_cols=100 Identities=16% Similarity=0.155 Sum_probs=53.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCC-CHHHHHHHHHHHhCCC--------CCccccccc
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEY-DADQILDIVIKFLMPS--------SRLSEIMDK 248 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~-~~~~~~~~i~~~l~~~--------~~~~~~~~~ 248 (824)
.-..++|+|..|+|||||++.+.+. ... +..+..- +.+.. .+.++..+.+.+-+.. .+.+.....
T Consensus 136 ~Gqri~I~G~sG~GKTtLl~~i~~~--~~~--~~gvi~~--~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~ 209 (413)
T TIGR03497 136 KGQRVGIFAGSGVGKSTLLGMIARN--AKA--DINVIAL--IGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRL 209 (413)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC--CCC--CeEEEEE--EccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHH
Confidence 3568999999999999999999883 222 2222222 33322 3344444433321111 111111111
Q ss_pred CHHHHHHHHHHhc--CCCeEEEEEecCCCh-hhHHHHH
Q 003387 249 NYEMKKIILHEYL--MTKRYLIVIDDVWSI-DMWDVIQ 283 (824)
Q Consensus 249 ~~~~~~~~l~~~L--~~kr~LlVlDdv~~~-~~~~~l~ 283 (824)
-....+..+.+++ +++.+|+++||+-.. ..+.++.
T Consensus 210 ~~~~~a~tiAEyfr~~G~~Vll~~Dsltr~A~A~rEis 247 (413)
T TIGR03497 210 KAAFTATAIAEYFRDQGKDVLLMMDSVTRFAMAQREIG 247 (413)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcCcHHHHHHHHHHH
Confidence 1222334455555 579999999999654 2344443
No 364
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.20 E-value=0.025 Score=50.41 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=19.9
Q ss_pred EEEEcCCCChHHHHHHHHhCCccccCCCce
Q 003387 182 VAILDSIGLDKTAFAGEAYNSSYVKHYFDC 211 (824)
Q Consensus 182 i~I~G~gGvGKTtLa~~v~~~~~~~~~F~~ 211 (824)
|-|+|.+|+||||+|+.+.. .+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCceeE
Confidence 56899999999999999999 67777754
No 365
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.19 E-value=0.21 Score=54.43 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..++.|+|.+|+||||++.++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999876
No 366
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.18 E-value=0.027 Score=54.01 Aligned_cols=36 Identities=17% Similarity=-0.000 Sum_probs=28.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCcccc-CCCceeEEEE
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVK-HYFDCHAWIT 216 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~-~~F~~~~wv~ 216 (824)
..++-++|+.|+|||.||+.+.+ .+. +.....+-++
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d 39 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRID 39 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHh
Confidence 56788999999999999999988 454 4455555565
No 367
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.18 E-value=0.49 Score=47.15 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|+|..|.|||||++.+..
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999976
No 368
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.18 E-value=0.097 Score=54.40 Aligned_cols=90 Identities=21% Similarity=0.190 Sum_probs=49.3
Q ss_pred HHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCccc
Q 003387 165 MEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSE 244 (824)
Q Consensus 165 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~ 244 (824)
...+++.+.... +-+-++|+.|+|||++++...+.- -...| ...-+. .|..-....+++.|-..+...... .
T Consensus 22 ~~~ll~~l~~~~---~pvLl~G~~GtGKT~li~~~l~~l-~~~~~-~~~~~~--~s~~Tts~~~q~~ie~~l~k~~~~-~ 93 (272)
T PF12775_consen 22 YSYLLDLLLSNG---RPVLLVGPSGTGKTSLIQNFLSSL-DSDKY-LVITIN--FSAQTTSNQLQKIIESKLEKRRGR-V 93 (272)
T ss_dssp HHHHHHHHHHCT---EEEEEESSTTSSHHHHHHHHHHCS-TTCCE-EEEEEE--S-TTHHHHHHHHCCCTTECECTTE-E
T ss_pred HHHHHHHHHHcC---CcEEEECCCCCchhHHHHhhhccC-Ccccc-ceeEee--ccCCCCHHHHHHHHhhcEEcCCCC-C
Confidence 455667666653 456899999999999999988631 11122 233455 555544444443222222111110 0
Q ss_pred ccccCHHHHHHHHHHhcCCCeEEEEEecCCC
Q 003387 245 IMDKNYEMKKIILHEYLMTKRYLIVIDDVWS 275 (824)
Q Consensus 245 ~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 275 (824)
.. --.+|+.++.+||+--
T Consensus 94 ~g-------------P~~~k~lv~fiDDlN~ 111 (272)
T PF12775_consen 94 YG-------------PPGGKKLVLFIDDLNM 111 (272)
T ss_dssp EE-------------EESSSEEEEEEETTT-
T ss_pred CC-------------CCCCcEEEEEecccCC
Confidence 00 0136899999999963
No 369
>PRK00625 shikimate kinase; Provisional
Probab=94.18 E-value=0.03 Score=53.82 Aligned_cols=21 Identities=14% Similarity=0.120 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 003387 181 VVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.|.++||.|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 370
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.16 E-value=0.027 Score=55.84 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 003387 181 VVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~ 201 (824)
+|+|.|..|+||||+|+.+.+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999877
No 371
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.16 E-value=0.049 Score=60.20 Aligned_cols=42 Identities=17% Similarity=0.135 Sum_probs=36.9
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..++|+++.++.+...+..+. -|-|.|.+|+|||++|+.+..
T Consensus 20 ~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHH
Confidence 568899999999988887654 578999999999999999988
No 372
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=94.16 E-value=0.13 Score=56.43 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=61.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccC--CCc---------eeEEEECCCCCCCCHHHHHHHHHHHhC-CCC------
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKH--YFD---------CHAWITEPYSNEYDADQILDIVIKFLM-PSS------ 240 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~--~F~---------~~~wv~~~vs~~~~~~~~~~~i~~~l~-~~~------ 240 (824)
-.-++|.|-.|+|||||+..+.+..+... ..| .++++- +.+.....+.+.+.+..-+ ...
T Consensus 141 GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~--IGerre~~efi~~~l~~~g~l~rtvvv~a 218 (466)
T TIGR01040 141 GQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAA--MGVNMETARFFKQDFEENGSMERVCLFLN 218 (466)
T ss_pred CCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEE--eeeehHHHHHHHHHHHhcCCcceEEEEEE
Confidence 45789999999999999999987543100 022 556666 7777565565555555544 111
Q ss_pred --CcccccccCHHHHHHHHHHhcC---CCeEEEEEecCCCh-hhHHHHHh
Q 003387 241 --RLSEIMDKNYEMKKIILHEYLM---TKRYLIVIDDVWSI-DMWDVIQE 284 (824)
Q Consensus 241 --~~~~~~~~~~~~~~~~l~~~L~---~kr~LlVlDdv~~~-~~~~~l~~ 284 (824)
+.+.....-....+..+.++++ ++.+|+++||+-.. ..+.++..
T Consensus 219 tsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~A~A~REisl 268 (466)
T TIGR01040 219 LANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSYADALREVSA 268 (466)
T ss_pred CCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHHHHHHHHHHH
Confidence 1111111112223344566655 59999999999654 34444443
No 373
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.14 E-value=0.095 Score=56.84 Aligned_cols=78 Identities=14% Similarity=0.206 Sum_probs=51.0
Q ss_pred CCCceechhhHHHHHHHHHcC------------CCCeEEEEEEcCCCChHHHHHHHHhCCccccCCC---ceeEEEECCC
Q 003387 155 SRDTVGLDDRMEELLDLLIEG------------PPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYF---DCHAWITEPY 219 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F---~~~~wv~~~v 219 (824)
...++|.+..++.+..++... +...+.|-++|+.|+||||+|+.+.. .....| +..-|.. .
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk--~l~~~fi~vD~t~f~e--~ 89 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPFIKVEATKFTE--V 89 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH--HhCChheeecchhhcc--C
Confidence 356889999999988777541 11246789999999999999999988 444444 2222222 1
Q ss_pred C-CCCCHHHHHHHHHHHh
Q 003387 220 S-NEYDADQILDIVIKFL 236 (824)
Q Consensus 220 s-~~~~~~~~~~~i~~~l 236 (824)
. ...+...+.+++....
T Consensus 90 GyvG~d~e~~ir~L~~~A 107 (443)
T PRK05201 90 GYVGRDVESIIRDLVEIA 107 (443)
T ss_pred CcccCCHHHHHHHHHHHH
Confidence 1 1235666666666555
No 374
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.14 E-value=0.22 Score=49.04 Aligned_cols=24 Identities=17% Similarity=0.201 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
-.+++|+|..|.|||||.+.+..-
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999873
No 375
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.41 Score=47.69 Aligned_cols=95 Identities=19% Similarity=0.137 Sum_probs=59.3
Q ss_pred CCCCCceechhhHHHHHHHHHcC-----------CCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCC
Q 003387 153 SKSRDTVGLDDRMEELLDLLIEG-----------PPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSN 221 (824)
Q Consensus 153 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~ 221 (824)
+..+++-|-.+.++++-+..... -+..+=|-.+|++|.|||-+|++|.| +....| +. |-.
T Consensus 174 vty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf-----ir--vig 244 (435)
T KOG0729|consen 174 VTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF-----IR--VIG 244 (435)
T ss_pred cccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE-----Ee--ehh
Confidence 44456777777777776655432 13466788999999999999999999 666554 33 211
Q ss_pred CCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHhcCC-CeEEEEEecCC
Q 003387 222 EYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMT-KRYLIVIDDVW 274 (824)
Q Consensus 222 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~ 274 (824)
.++....-+ ....+..+|.+.-+. |-++|.+|.++
T Consensus 245 --------selvqkyvg----------egarmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 245 --------SELVQKYVG----------EGARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred --------HHHHHHHhh----------hhHHHHHHHHHHhcccceEEEEeeccc
Confidence 112211111 113445566666665 56788888885
No 376
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=94.13 E-value=0.19 Score=55.69 Aligned_cols=93 Identities=12% Similarity=0.080 Sum_probs=49.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCC--------CCCcccccccC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMP--------SSRLSEIMDKN 249 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~--------~~~~~~~~~~~ 249 (824)
.-.+++|+|..|+|||||++.+.+. ... -..++++. --+.-++.++..+.+..-.. ..+.+.....-
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~~--~~~-~~gvI~~~--Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~ 231 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIARN--TSA-DLNVIALI--GERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIK 231 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc--cCC-CeEEEEEE--ecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHH
Confidence 3578999999999999999999883 222 12344443 11222344443332211100 11111111111
Q ss_pred HHHHHHHHHHhc--CCCeEEEEEecCCC
Q 003387 250 YEMKKIILHEYL--MTKRYLIVIDDVWS 275 (824)
Q Consensus 250 ~~~~~~~l~~~L--~~kr~LlVlDdv~~ 275 (824)
....+..+.+++ +++.+||++||+-.
T Consensus 232 ~~~~a~~iAEyfr~~g~~Vll~~Dsltr 259 (438)
T PRK07721 232 GAYTATAIAEYFRDQGLNVMLMMDSVTR 259 (438)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeChHH
Confidence 223334455555 57999999999964
No 377
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.11 E-value=0.21 Score=49.52 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
-.+++|+|..|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999884
No 378
>PLN02318 phosphoribulokinase/uridine kinase
Probab=94.10 E-value=0.061 Score=60.59 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=28.0
Q ss_pred HHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 168 LLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 168 l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..+.+....+++.+|+|.|..|.||||||+.+..
T Consensus 54 a~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lag 87 (656)
T PLN02318 54 ACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLN 87 (656)
T ss_pred HHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHh
Confidence 3444554555789999999999999999999987
No 379
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.09 E-value=0.28 Score=54.44 Aligned_cols=96 Identities=11% Similarity=0.084 Sum_probs=52.5
Q ss_pred eEEEEEEcCCCChHHHHH-HHHhCCcccc-----CCCceeEEEECCCCCCCCHHHHHHHHHHHhCC-CCCcc--cccccC
Q 003387 179 LSVVAILDSIGLDKTAFA-GEAYNSSYVK-----HYFDCHAWITEPYSNEYDADQILDIVIKFLMP-SSRLS--EIMDKN 249 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa-~~v~~~~~~~-----~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~-~~~~~--~~~~~~ 249 (824)
-.-++|.|-.|+|||||| -.|.|...+. +.-+.++++- +.+..+.-.-+.+.++.-+. ....- ...+..
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~Vyva--IGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep 266 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVS--IGQRCSNVARIHRLLRSYGALRYTTVMAATAAEP 266 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEE--eccchHHHHHHHHHHHhcCCccceEEEEECCCCC
Confidence 357899999999999997 6666643221 2335677777 77765433323333333331 10000 000111
Q ss_pred H------HHHHHHHHHhc--CCCeEEEEEecCCCh
Q 003387 250 Y------EMKKIILHEYL--MTKRYLIVIDDVWSI 276 (824)
Q Consensus 250 ~------~~~~~~l~~~L--~~kr~LlVlDdv~~~ 276 (824)
. .-....+.+++ +++.+|||+||+-..
T Consensus 267 ~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 267 AGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHH
Confidence 1 11122333444 579999999999754
No 380
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.07 E-value=0.3 Score=49.54 Aligned_cols=48 Identities=27% Similarity=0.135 Sum_probs=33.5
Q ss_pred HHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEE
Q 003387 167 ELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIT 216 (824)
Q Consensus 167 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~ 216 (824)
.+-++|..+=..-.++.|.|.+|.||||+|..+... ....-+.++|++
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~--~~~~g~~~~~is 55 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYK--GLRDGDPVIYVT 55 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHH--HHhcCCeEEEEE
Confidence 444455455445689999999999999999886542 222335678887
No 381
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.07 E-value=0.47 Score=52.14 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+|+++|..|+||||++..+..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999987765
No 382
>PRK05439 pantothenate kinase; Provisional
Probab=94.04 E-value=0.22 Score=52.47 Aligned_cols=82 Identities=12% Similarity=0.061 Sum_probs=44.7
Q ss_pred CCCeEEEEEEcCCCChHHHHHHHHhCCccccCCC--ceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCcccccccCHHHH
Q 003387 176 PPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYF--DCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMK 253 (824)
Q Consensus 176 ~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F--~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 253 (824)
....-+|||.|.+|+||||+|+.+.. ...... ..+.-++ ...-+...+.+.. ..+....+.| +.-|.+.+
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~--~DdFy~~~~~l~~--~~l~~~kg~P--es~D~~~l 154 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVT--TDGFLYPNAVLEE--RGLMKRKGFP--ESYDMRAL 154 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEe--ccccccCHHHHhh--hhccccCCCc--ccccHHHH
Confidence 34578999999999999999998877 443321 2233444 3333333332221 1111111111 33455666
Q ss_pred HHHHHHhcCCCe
Q 003387 254 KIILHEYLMTKR 265 (824)
Q Consensus 254 ~~~l~~~L~~kr 265 (824)
...|.....++.
T Consensus 155 ~~~L~~Lk~G~~ 166 (311)
T PRK05439 155 LRFLSDVKSGKP 166 (311)
T ss_pred HHHHHHHHcCCC
Confidence 666666655554
No 383
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.02 E-value=0.055 Score=63.10 Aligned_cols=103 Identities=12% Similarity=0.181 Sum_probs=60.1
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHH-HHHHH
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQI-LDIVI 233 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~-~~~i~ 233 (824)
-++++||+++++++++.|.....+-. ..+|-+|||||++|.-+.. ++... +|+......++ --+|.
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~--rIv~g---------~VP~~L~~~~i~sLD~g 235 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQ--RIVNG---------DVPESLKDKRIYSLDLG 235 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHH--HHhcC---------CCCHHHcCCEEEEecHH
Confidence 36789999999999999987542222 3589999999998755554 22110 02221111111 11222
Q ss_pred HHhCCCCCcccccccCHHHHHHHHHHhcC-CCeEEEEEecCCC
Q 003387 234 KFLMPSSRLSEIMDKNYEMKKIILHEYLM-TKRYLIVIDDVWS 275 (824)
Q Consensus 234 ~~l~~~~~~~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~ 275 (824)
.-+.+.. -..+.+++...+.+.++ .++..|++|.+..
T Consensus 236 ~LvAGak-----yRGeFEeRlk~vl~ev~~~~~vILFIDEiHt 273 (786)
T COG0542 236 SLVAGAK-----YRGEFEERLKAVLKEVEKSKNVILFIDEIHT 273 (786)
T ss_pred HHhcccc-----ccCcHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 3333322 12345566666666664 4689999999863
No 384
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.02 E-value=0.12 Score=53.81 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=21.8
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 177 PQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 177 ~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
....+|||.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999987755
No 385
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.02 E-value=0.39 Score=50.16 Aligned_cols=53 Identities=11% Similarity=0.002 Sum_probs=36.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCC-CceeEEEECCCCCCCCHHHHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHY-FDCHAWITEPYSNEYDADQILDIVIKFLM 237 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~-F~~~~wv~~~vs~~~~~~~~~~~i~~~l~ 237 (824)
-.++.|.|.+|+||||++.++..+ .... =..++|++ ... ...++...+...+.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~--~~~~~g~~vl~iS--~E~--~~~~~~~r~~~~~~ 83 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALD--LITQHGVRVGTIS--LEE--PVVRTARRLLGQYA 83 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH--HHHhcCceEEEEE--ccc--CHHHHHHHHHHHHh
Confidence 468889999999999999988763 3222 24677887 544 45666666665543
No 386
>PRK06217 hypothetical protein; Validated
Probab=94.01 E-value=0.096 Score=51.10 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
..|.|.|++|.||||+|+++.+.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999883
No 387
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.00 E-value=0.18 Score=55.44 Aligned_cols=99 Identities=13% Similarity=0.121 Sum_probs=52.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCC-CHHHHHHHHHHHhCCC--------CCcccccccC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEY-DADQILDIVIKFLMPS--------SRLSEIMDKN 249 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~-~~~~~~~~i~~~l~~~--------~~~~~~~~~~ 249 (824)
-..++|+|..|+|||||++.+.+.. +. +..+.+. +.+.. .+.++..++...=... .+.+.....-
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~~--~~--~~~vi~~--iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~ 210 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARYT--EA--DVVVVGL--IGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLR 210 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC--CC--CEEEEEE--EecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHH
Confidence 4579999999999999999998832 21 2333343 33332 2334444433321110 1101011111
Q ss_pred HHHHHHHHHHhc--CCCeEEEEEecCCCh-hhHHHHH
Q 003387 250 YEMKKIILHEYL--MTKRYLIVIDDVWSI-DMWDVIQ 283 (824)
Q Consensus 250 ~~~~~~~l~~~L--~~kr~LlVlDdv~~~-~~~~~l~ 283 (824)
....+..+.+++ +++++|+++||+-.. ..+.++.
T Consensus 211 a~~~a~tiAEyfr~~G~~Vll~~Dsltr~A~A~REis 247 (411)
T TIGR03496 211 AAFYATAIAEYFRDQGKDVLLLMDSLTRFAMAQREIA 247 (411)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeChHHHHHHHHHHH
Confidence 122233444444 589999999999654 2334443
No 388
>PRK06936 type III secretion system ATPase; Provisional
Probab=94.00 E-value=0.19 Score=55.32 Aligned_cols=99 Identities=14% Similarity=0.126 Sum_probs=54.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCC-CHHHHHHHHHHHhCCC--------CCcccccccC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEY-DADQILDIVIKFLMPS--------SRLSEIMDKN 249 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~-~~~~~~~~i~~~l~~~--------~~~~~~~~~~ 249 (824)
-..++|.|..|+|||||.+.+++.. . -+.++++- +.+.. .+.++..+.+..-+.. .+.+.....-
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~~--~--~dv~V~~l--iGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRSA--E--VDVTVLAL--IGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcCC--C--CCEEEEEE--EccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence 5689999999999999999999942 2 24566665 55543 2333333322221110 0000000001
Q ss_pred HHHHHHHHHHhc--CCCeEEEEEecCCCh-hhHHHHH
Q 003387 250 YEMKKIILHEYL--MTKRYLIVIDDVWSI-DMWDVIQ 283 (824)
Q Consensus 250 ~~~~~~~l~~~L--~~kr~LlVlDdv~~~-~~~~~l~ 283 (824)
....+..+.+++ ++|++|+++||+-.. ....++.
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~DslTR~A~A~REis 272 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSVTRFARAQREIG 272 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHHH
Confidence 111123344444 589999999999654 3344444
No 389
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.96 E-value=0.33 Score=50.07 Aligned_cols=24 Identities=13% Similarity=0.119 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
-.+++|+|..|.|||||.+.+..-
T Consensus 26 Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 26 GQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999999874
No 390
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.95 E-value=0.041 Score=55.25 Aligned_cols=66 Identities=15% Similarity=0.106 Sum_probs=40.2
Q ss_pred hHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHH
Q 003387 164 RMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDI 231 (824)
Q Consensus 164 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~ 231 (824)
...++++.+.....+..+|||.|.+|+||+||.-.+....+-+.+==.++-|+ -|.+++--.++-+
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVD--PSSp~tGGAlLGD 79 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVD--PSSPFTGGALLGD 79 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE---GGGGCC---SS--
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEEC--CCCCCCCCccccc
Confidence 55667777776555688999999999999999988877322222222455666 6777776665554
No 391
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.94 E-value=0.15 Score=53.77 Aligned_cols=114 Identities=18% Similarity=0.084 Sum_probs=64.1
Q ss_pred HHHHHHH-cCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCcc-c
Q 003387 167 ELLDLLI-EGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLS-E 244 (824)
Q Consensus 167 ~l~~~L~-~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~-~ 244 (824)
.|-..|. .+=+.-+++-|+|..|+||||||-.+.. +.+..-..++||+ ....++.. .+++++...+.- -
T Consensus 40 ~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID--~e~~ld~~-----~a~~lGvdl~rllv 110 (322)
T PF00154_consen 40 ALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFID--AEHALDPE-----YAESLGVDLDRLLV 110 (322)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEE--SSS---HH-----HHHHTT--GGGEEE
T ss_pred ccchhhccCccccCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEec--Ccccchhh-----HHHhcCccccceEE
Confidence 3444443 2223457999999999999999999887 5555556789999 77766654 344554422110 0
Q ss_pred ccccCHHHHHHHHHHhcC-CCeEEEEEecCCChhhHHHHHhhCCCC
Q 003387 245 IMDKNYEMKKIILHEYLM-TKRYLIVIDDVWSIDMWDVIQEILPDN 289 (824)
Q Consensus 245 ~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~~~~~~l~~~~~~~ 289 (824)
..+...++....+...++ +.--++|+|-|-....-.++...+.+.
T Consensus 111 ~~P~~~E~al~~~e~lirsg~~~lVVvDSv~al~p~~E~e~~~~~~ 156 (322)
T PF00154_consen 111 VQPDTGEQALWIAEQLIRSGAVDLVVVDSVAALVPKAELEGEIGDQ 156 (322)
T ss_dssp EE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT-B-HHHHTTSTSST
T ss_pred ecCCcHHHHHHHHHHHhhcccccEEEEecCcccCCHHHHhhccccc
Confidence 233345555566666664 455689999997653333444444333
No 392
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.93 E-value=0.36 Score=48.26 Aligned_cols=23 Identities=26% Similarity=0.195 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+|+|+|+.|+|||||.+.|..
T Consensus 29 GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999876
No 393
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.92 E-value=0.29 Score=50.71 Aligned_cols=127 Identities=17% Similarity=0.135 Sum_probs=67.8
Q ss_pred eechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCC
Q 003387 159 VGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMP 238 (824)
Q Consensus 159 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~ 238 (824)
.|...+..+.+..+.... -.+|.|.|..|.||||+++.+.+ .+...-..++.+. -+.++....+ .++.
T Consensus 62 lg~~~~~~~~l~~~~~~~--~GlilisG~tGSGKTT~l~all~--~i~~~~~~iitiE--dp~E~~~~~~-----~q~~- 129 (264)
T cd01129 62 LGLKPENLEIFRKLLEKP--HGIILVTGPTGSGKTTTLYSALS--ELNTPEKNIITVE--DPVEYQIPGI-----NQVQ- 129 (264)
T ss_pred cCCCHHHHHHHHHHHhcC--CCEEEEECCCCCcHHHHHHHHHh--hhCCCCCeEEEEC--CCceecCCCc-----eEEE-
Confidence 355555444444444333 45899999999999999998876 3432212233343 1111111110 0111
Q ss_pred CCCcccccccCHHHHHHHHHHhcCCCeEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEechHHHHh
Q 003387 239 SSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWSIDMWDVIQEILPDNQNGSRVLITLTDIRIII 306 (824)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~ 306 (824)
............++..|+...=.|+++++.+.+....+..... .|-.++-|....++..
T Consensus 130 ------v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~aa~---tGh~v~tTlHa~~~~~ 188 (264)
T cd01129 130 ------VNEKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQAAL---TGHLVLSTLHTNDAPG 188 (264)
T ss_pred ------eCCcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHHHH---cCCcEEEEeccCCHHH
Confidence 1111112356677788887888999999998875443332222 2434555544444433
No 394
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.91 E-value=0.055 Score=55.14 Aligned_cols=69 Identities=17% Similarity=0.109 Sum_probs=50.4
Q ss_pred HHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHH
Q 003387 165 MEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKF 235 (824)
Q Consensus 165 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~ 235 (824)
-.+++..+.....+..||||.|.+|+||+||.-.+-....-+.+==.++=|+ -|.+|.--.|+-+=++.
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVD--PSSp~TGGsiLGDRiRM 105 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVD--PSSPFTGGSILGDRIRM 105 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEEC--CCCCCCCccccccHhhH
Confidence 4567777777667789999999999999999988777433334434566777 88888777776654443
No 395
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=93.90 E-value=0.13 Score=60.55 Aligned_cols=52 Identities=25% Similarity=0.219 Sum_probs=34.9
Q ss_pred CCceechhhHHHHHHHHHc---CC-------CCeEEEEEEcCCCChHHHHHHHHhCCccccCCC
Q 003387 156 RDTVGLDDRMEELLDLLIE---GP-------PQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYF 209 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~---~~-------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F 209 (824)
.++.|.+..++++.+.+.. .. .-.+-|.++|++|.||||+|+.+.+ +....|
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~--~~~~~f 213 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG--EAKVPF 213 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHH--HcCCCE
Confidence 4567877776666554432 10 1123488999999999999999988 444333
No 396
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.86 E-value=0.033 Score=54.09 Aligned_cols=22 Identities=23% Similarity=0.126 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 003387 181 VVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999883
No 397
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.85 E-value=0.12 Score=56.88 Aligned_cols=103 Identities=9% Similarity=0.112 Sum_probs=61.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCC-HHHHHHHHHHHhCCC--------CCcccccccC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYD-ADQILDIVIKFLMPS--------SRLSEIMDKN 249 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~-~~~~~~~i~~~l~~~--------~~~~~~~~~~ 249 (824)
-.-++|.|..|+|||+|+..+.++.. +.+-+.++++- +.+..+ +.++.+++...=... .+.+.....-
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~--iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCG--IGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEE--eccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 45789999999999999999877422 23346788887 766553 345555554431111 1111111111
Q ss_pred HHHHHHHHHHhcC---CCeEEEEEecCCCh-hhHHHHHh
Q 003387 250 YEMKKIILHEYLM---TKRYLIVIDDVWSI-DMWDVIQE 284 (824)
Q Consensus 250 ~~~~~~~l~~~L~---~kr~LlVlDdv~~~-~~~~~l~~ 284 (824)
....+..+.++++ ++++|+++||+-.. ..+.++..
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~DslTR~A~A~REisl 253 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNIFRFIQAGSEVSG 253 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecChHHHHHHHHHHHH
Confidence 2233445666654 69999999999654 33444443
No 398
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.83 E-value=0.23 Score=53.27 Aligned_cols=89 Identities=12% Similarity=0.038 Sum_probs=51.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCH--HHHHHHHHHHhCCCCCcccccccCHHHHHH
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDA--DQILDIVIKFLMPSSRLSEIMDKNYEMKKI 255 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 255 (824)
+.+++.|+|+.|+||||++..+... ....-..+.+|+ .. .+.. .+-++..++.++... ....+..++..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lIt--aD-tyR~gAveQLk~yae~lgvpv----~~~~dp~dL~~ 275 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFIT--TD-TFRSGAVEQFQGYADKLDVEL----IVATSPAELEE 275 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEe--CC-ccCccHHHHHHHHhhcCCCCE----EecCCHHHHHH
Confidence 4689999999999999999988763 322223566776 33 3322 333444444443211 12234555555
Q ss_pred HHHHhc-CCCeEEEEEecCCC
Q 003387 256 ILHEYL-MTKRYLIVIDDVWS 275 (824)
Q Consensus 256 ~l~~~L-~~kr~LlVlDdv~~ 275 (824)
.+...- .+..=+|++|-.-.
T Consensus 276 al~~l~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 276 AVQYMTYVNCVDHILIDTVGR 296 (407)
T ss_pred HHHHHHhcCCCCEEEEECCCC
Confidence 554332 13446788888754
No 399
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=93.82 E-value=0.18 Score=48.30 Aligned_cols=45 Identities=20% Similarity=0.159 Sum_probs=33.7
Q ss_pred ceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 003387 158 TVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 158 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
++|.+..+.++++.+..-.....-|-|+|..|.||+.+|+.|++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 578888999999888763222345569999999999999999993
No 400
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.81 E-value=0.043 Score=53.35 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
.++.|+|+.|+||||+++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998773
No 401
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=93.76 E-value=0.21 Score=54.98 Aligned_cols=100 Identities=11% Similarity=0.068 Sum_probs=52.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCC-CCCHHHHHHHHHHHhCCCC--------Cccccccc
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSN-EYDADQILDIVIKFLMPSS--------RLSEIMDK 248 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~-~~~~~~~~~~i~~~l~~~~--------~~~~~~~~ 248 (824)
.-..++|+|..|+|||||++.+.+... .+..+... +.. .-++.++..+.+..-+... +.+.....
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~~~----~dv~vig~--IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl 227 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRYTQ----ADVVVVGL--IGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRI 227 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhcccC----CCeEEEEE--EeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhH
Confidence 357899999999999999999988321 12332232 222 2233333333333222110 00001122
Q ss_pred CHHHHHHHHHHhc--CCCeEEEEEecCCCh-hhHHHHH
Q 003387 249 NYEMKKIILHEYL--MTKRYLIVIDDVWSI-DMWDVIQ 283 (824)
Q Consensus 249 ~~~~~~~~l~~~L--~~kr~LlVlDdv~~~-~~~~~l~ 283 (824)
...+....+.++. +++.+|+++||+-.. ..+.++.
T Consensus 228 ~a~e~a~~iAEyfr~~g~~Vll~~Dsltr~a~A~REis 265 (434)
T PRK07196 228 KATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIA 265 (434)
T ss_pred HHHHHHHHHHHHhhhccCCEEEeecchhHHHhhhhHHH
Confidence 2233344445444 579999999999654 2344443
No 402
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.71 E-value=0.16 Score=57.71 Aligned_cols=73 Identities=19% Similarity=0.185 Sum_probs=48.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHHH
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIIL 257 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 257 (824)
.-+|.-.+|++|+||||||..|.++. -| .++=|. .|..-....+-..|...+....
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEIN--ASDeRt~~~v~~kI~~avq~~s----------------- 380 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEIN--ASDERTAPMVKEKIENAVQNHS----------------- 380 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEec--ccccccHHHHHHHHHHHHhhcc-----------------
Confidence 46899999999999999999998842 12 234444 7766555555555544443321
Q ss_pred HHhcC--CCeEEEEEecCCCh
Q 003387 258 HEYLM--TKRYLIVIDDVWSI 276 (824)
Q Consensus 258 ~~~L~--~kr~LlVlDdv~~~ 276 (824)
.|. ++..-||+|.++..
T Consensus 381 --~l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 381 --VLDADSRPVCLVIDEIDGA 399 (877)
T ss_pred --ccccCCCcceEEEecccCC
Confidence 121 46777999999875
No 403
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.70 E-value=0.47 Score=46.27 Aligned_cols=24 Identities=17% Similarity=0.104 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
...+|.|.|.+|.||||+|+.+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~ 40 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEK 40 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999987
No 404
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=93.69 E-value=0.28 Score=52.12 Aligned_cols=24 Identities=17% Similarity=0.072 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
-.+++|+|..|.|||||.+.+...
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 405
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.68 E-value=0.053 Score=54.01 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=25.6
Q ss_pred HHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 171 LLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 171 ~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
|+..+....+.|.|+|+.|+|||||++.+.+
T Consensus 5 ~~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 5 WLFNKPAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred cccCCCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 3444455678999999999999999999976
No 406
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.68 E-value=0.063 Score=50.20 Aligned_cols=36 Identities=14% Similarity=-0.142 Sum_probs=29.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEE
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIT 216 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~ 216 (824)
..||-|.|..|.||||||+++.. +....-..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 35889999999999999999999 6666656677776
No 407
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.68 E-value=0.068 Score=51.02 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
...+++|+|..|+|||||++.+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 467999999999999999999987
No 408
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.68 E-value=0.23 Score=58.50 Aligned_cols=100 Identities=21% Similarity=0.059 Sum_probs=64.6
Q ss_pred HHHHHHHH-cCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCc-c
Q 003387 166 EELLDLLI-EGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRL-S 243 (824)
Q Consensus 166 ~~l~~~L~-~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~-~ 243 (824)
..+-.+|. .+=..-+++-|+|..|+||||||.++.-. ....=..++|++ ..+.++. ..+++++...+. .
T Consensus 46 ~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId--~E~t~~~-----~~A~~lGvDl~~ll 116 (790)
T PRK09519 46 IALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFID--AEHALDP-----DYAKKLGVDTDSLL 116 (790)
T ss_pred HHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEC--CccchhH-----HHHHHcCCChhHeE
Confidence 44555665 44345688889999999999999775552 223335678998 7777774 367777664221 1
Q ss_pred cccccCHHHHHHHHHHhcCC-CeEEEEEecCC
Q 003387 244 EIMDKNYEMKKIILHEYLMT-KRYLIVIDDVW 274 (824)
Q Consensus 244 ~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~ 274 (824)
-......++....+...++. +--|||+|-+-
T Consensus 117 v~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 117 VSQPDTGEQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred EecCCCHHHHHHHHHHHhhcCCCeEEEEcchh
Confidence 12333445566666666644 56689999985
No 409
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=93.65 E-value=0.17 Score=56.10 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
-..++|+|..|+|||||++.+.+.
T Consensus 163 Gq~~~I~G~sG~GKStLl~~I~~~ 186 (440)
T TIGR01026 163 GQRIGIFAGSGVGKSTLLGMIARN 186 (440)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999884
No 410
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.64 E-value=0.05 Score=52.76 Aligned_cols=21 Identities=43% Similarity=0.476 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 003387 181 VVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~ 201 (824)
+|+|.|..|+||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 411
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.63 E-value=0.056 Score=50.02 Aligned_cols=23 Identities=30% Similarity=0.250 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+++.|+|.+|+||||+.+.+-.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 68999999999999999988877
No 412
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=93.63 E-value=0.2 Score=55.20 Aligned_cols=97 Identities=15% Similarity=0.099 Sum_probs=51.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCH-HHHHHHHHHHhCCC----------CCcccccc
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDA-DQILDIVIKFLMPS----------SRLSEIMD 247 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~-~~~~~~i~~~l~~~----------~~~~~~~~ 247 (824)
-..++|+|..|+|||||++.+... .. -+..+..- +.+.... .+..+. .++.. .+.+....
T Consensus 157 Gq~~~i~G~sG~GKStLl~~i~~~--~~--~~v~vi~~--iGergrev~e~~~~---~l~~~l~~tvvV~atsddsp~~R 227 (434)
T PRK08472 157 GQKLGIFAGSGVGKSTLMGMIVKG--CL--APIKVVAL--IGERGREIPEFIEK---NLGGDLENTVIVVATSDDSPLMR 227 (434)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhc--cC--CCEEEEEe--eCccchhHHHHHHH---HhcCcccceEEEEECCCCCHHHh
Confidence 468899999999999999999973 22 23333343 4444333 232222 22221 00000000
Q ss_pred cCHHHHHHHHHHhc--CCCeEEEEEecCCCh-hhHHHHHh
Q 003387 248 KNYEMKKIILHEYL--MTKRYLIVIDDVWSI-DMWDVIQE 284 (824)
Q Consensus 248 ~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~-~~~~~l~~ 284 (824)
.-.-.....+.+++ +++++|+++||+-.. ..+.++..
T Consensus 228 ~~~~~~a~~iAEyFrd~G~~Vll~~DslTr~A~A~REi~l 267 (434)
T PRK08472 228 KYGAFCAMSVAEYFKNQGLDVLFIMDSVTRFAMAQREIGL 267 (434)
T ss_pred hHHHHHHHHHHHHHHHcCCCEEEecccchHHHHHHHHHHH
Confidence 00011133344444 589999999999654 34455543
No 413
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.62 E-value=0.082 Score=52.38 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.++||+|..|.|||||++.+..
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 46899999999999999999865
No 414
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.61 E-value=0.052 Score=52.79 Aligned_cols=22 Identities=14% Similarity=0.274 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
++|+|+|+.|+||||||+.+.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999998
No 415
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=93.61 E-value=0.19 Score=55.77 Aligned_cols=104 Identities=13% Similarity=0.113 Sum_probs=58.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCc--eeEEEECCCCCCC-CHHHHHHHHHHHhCCCC--------Ccccccc
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFD--CHAWITEPYSNEY-DADQILDIVIKFLMPSS--------RLSEIMD 247 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~--~~~wv~~~vs~~~-~~~~~~~~i~~~l~~~~--------~~~~~~~ 247 (824)
-.-++|.|-.|+|||||+..+.+.....+.+. .++++- +.+.. .+.++.+++...=.... +.+....
T Consensus 141 GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~--iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R 218 (458)
T TIGR01041 141 GQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAA--MGITYEEANFFMKDFEETGALERAVVFLNLADDPAVER 218 (458)
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEE--ccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHH
Confidence 35789999999999999999998544332222 455555 65543 34455555543221111 1111111
Q ss_pred cCHHHHHHHHHHhcC---CCeEEEEEecCCCh-hhHHHHHh
Q 003387 248 KNYEMKKIILHEYLM---TKRYLIVIDDVWSI-DMWDVIQE 284 (824)
Q Consensus 248 ~~~~~~~~~l~~~L~---~kr~LlVlDdv~~~-~~~~~l~~ 284 (824)
.-..-.+..+.++++ ++++||++||+-.. ..+.++..
T Consensus 219 ~~a~~~a~tiAEyfr~d~G~~VLli~DslTR~A~A~REIsl 259 (458)
T TIGR01041 219 IVTPRMALTAAEYLAFEKDMHVLVILTDMTNYCEALREISA 259 (458)
T ss_pred HHHHHHHHHHHHHHHHccCCcEEEEEcChhHHHHHHHHHHH
Confidence 112222344555554 68999999999654 34445443
No 416
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.60 E-value=0.047 Score=52.68 Aligned_cols=23 Identities=9% Similarity=0.122 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
...|.|+|++|+||||+|+.+..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999988
No 417
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=93.60 E-value=0.93 Score=45.41 Aligned_cols=22 Identities=9% Similarity=0.070 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
+++.|.|+.|.||||+.+.+..
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999999853
No 418
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.57 E-value=0.25 Score=50.10 Aligned_cols=59 Identities=12% Similarity=0.141 Sum_probs=34.7
Q ss_pred HHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHH
Q 003387 168 LLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIV 232 (824)
Q Consensus 168 l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i 232 (824)
+-+.+..+=..-.++.|.|..|.||||+|.++... -.+.. ..+++++ ... +..++.+.+
T Consensus 13 ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g-~~~~yi~--~e~--~~~~~~~~~ 71 (230)
T PRK08533 13 LHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYG-FLQNG-YSVSYVS--TQL--TTTEFIKQM 71 (230)
T ss_pred eehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHH-HHhCC-CcEEEEe--CCC--CHHHHHHHH
Confidence 33344333334569999999999999998554432 22222 3456665 333 445666665
No 419
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.56 E-value=0.28 Score=53.97 Aligned_cols=37 Identities=14% Similarity=0.052 Sum_probs=26.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEE
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIT 216 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~ 216 (824)
...+|.++|..|+||||+|.++.. ..+..=..++.|+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~--~l~~~G~kV~lV~ 135 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY--YYQRKGFKPCLVC 135 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCCEEEEc
Confidence 468999999999999999988876 3333222445554
No 420
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.56 E-value=0.1 Score=53.95 Aligned_cols=21 Identities=19% Similarity=0.039 Sum_probs=17.7
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 003387 181 VVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.|.|+|.+|+||||+|+.+..
T Consensus 3 Liil~G~P~SGKTt~a~~L~~ 23 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKK 23 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 588999999999999999988
No 421
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.56 E-value=0.079 Score=53.44 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 003387 181 VVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-|.|+|++|+||||+|+.+.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999977
No 422
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.54 E-value=0.056 Score=49.86 Aligned_cols=21 Identities=10% Similarity=0.287 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 003387 181 VVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.|.|+|+.|+|||||++.+.+
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999998
No 423
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.52 E-value=0.069 Score=52.10 Aligned_cols=36 Identities=14% Similarity=0.093 Sum_probs=31.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEE
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIT 216 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~ 216 (824)
.++|.|+|+.|+|||||++.+.. .....|...++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeec
Confidence 46899999999999999999999 6677887777776
No 424
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=93.50 E-value=0.92 Score=54.53 Aligned_cols=158 Identities=12% Similarity=0.049 Sum_probs=76.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHHH
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIIL 257 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 257 (824)
+.+++.|.|+.+.||||+.+.+.-..- ..++-++|. +.... .-.++..|...++....... ...+...-...+
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~---maq~G~~vp--a~~~~-~i~~~~~i~~~ig~~~si~~-~lStfS~~m~~~ 398 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAAL---MAKSGLPIP--ANEPS-EIPVFKEIFADIGDEQSIEQ-SLSTFSGHMTNI 398 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHH---HHHhCCCcc--cCCCc-cccccceEEEecCCccchhh-chhHHHHHHHHH
Confidence 357899999999999999988854210 011112222 21100 00111111111211111000 000111111222
Q ss_pred HHhcC--CCeEEEEEecCCChhh---HHHH----HhhCCCCCCCcEEEEEechHHHHhhcccccC----------CcCcC
Q 003387 258 HEYLM--TKRYLIVIDDVWSIDM---WDVI----QEILPDNQNGSRVLITLTDIRIIISFQFEDG----------ENMRL 318 (824)
Q Consensus 258 ~~~L~--~kr~LlVlDdv~~~~~---~~~l----~~~~~~~~~gs~ilvTtR~~~v~~~f~~~~~----------~~~~~ 318 (824)
...+. ..+-|+++|..-...+ -..+ ...+. ..|+.+|+||...+++........ +...+
T Consensus 399 ~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~d~~~l~~ 476 (782)
T PRK00409 399 VRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVEFDEETLRP 476 (782)
T ss_pred HHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEEEecCcCcE
Confidence 22222 4778999999976432 1222 22222 247899999999888761111100 00001
Q ss_pred c--------cccchhhHHHhcCCCchhHHHHHhHH
Q 003387 319 D--------LVPTGGPLRATYKGRPFLILYHGSIS 345 (824)
Q Consensus 319 ~--------~~~~~~~i~~~c~GlPlai~~~~~~l 345 (824)
. -...|-+|++++ |+|-.+.--|..+
T Consensus 477 ~Ykl~~G~~g~S~a~~iA~~~-Glp~~ii~~A~~~ 510 (782)
T PRK00409 477 TYRLLIGIPGKSNAFEIAKRL-GLPENIIEEAKKL 510 (782)
T ss_pred EEEEeeCCCCCcHHHHHHHHh-CcCHHHHHHHHHH
Confidence 1 123466777766 7998888888777
No 425
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=93.48 E-value=0.59 Score=47.90 Aligned_cols=120 Identities=17% Similarity=0.113 Sum_probs=80.1
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHH
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIK 234 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~ 234 (824)
.++++|.... .+++.++......-+.+.|+|+.|+|||+-++..++.. ..+|.- ..+..+....++..+..
T Consensus 71 ~~~~l~tkt~-r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~-------p~~~l~-~~~p~~~a~~~i~~i~~ 141 (297)
T COG2842 71 APDFLETKTV-RRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPSN-------PNALLI-EADPSYTALVLILIICA 141 (297)
T ss_pred cccccccchh-HhHhhhhhhhhhcCceEEEeccccchhHHHHHhhcccC-------ccceee-cCChhhHHHHHHHHHHH
Confidence 4566665543 34556665544344588999999999999999999832 233432 16777777777777777
Q ss_pred HhCCCCCcccccccCHHHHHHHHHHhcCCCeEEEEEecCCCh--hhHHHHHhhCCCC
Q 003387 235 FLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWSI--DMWDVIQEILPDN 289 (824)
Q Consensus 235 ~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~ 289 (824)
.+.... ..........+...+++..-+|+.|+.... ..++.+.......
T Consensus 142 ~~~~~~------~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~~ 192 (297)
T COG2842 142 AAFGAT------DGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDKT 192 (297)
T ss_pred HHhccc------chhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHhh
Confidence 776643 234455666777777888889999988764 4566666544433
No 426
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.48 E-value=0.34 Score=57.53 Aligned_cols=114 Identities=14% Similarity=0.196 Sum_probs=71.6
Q ss_pred CceechhhHHHHHHHHHcCC------CCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHH
Q 003387 157 DTVGLDDRMEELLDLLIEGP------PQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILD 230 (824)
Q Consensus 157 ~~vGr~~~~~~l~~~L~~~~------~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~ 230 (824)
.++|-++.+..|.+.+.... ...-.+-+.|+.|+|||-||+++.. .+-+..+..+-++ .|+ .+.
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriD--mse------~~e 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLD--MSE------FQE 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEec--hhh------hhh
Confidence 47888888888888876531 2467888999999999999999887 4544444455554 443 222
Q ss_pred HHHHHhCCCCCcccccccCHHHHHHHHHHhcCCCeE-EEEEecCCChh--hHHHHHhhCC
Q 003387 231 IVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRY-LIVIDDVWSID--MWDVIQEILP 287 (824)
Q Consensus 231 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~-LlVlDdv~~~~--~~~~l~~~~~ 287 (824)
+.+.++...+ + -..+....|-+.++.+.| +|+||||...+ ....+...+.
T Consensus 633 -vskligsp~g---y---vG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD 685 (898)
T KOG1051|consen 633 -VSKLIGSPPG---Y---VGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLD 685 (898)
T ss_pred -hhhccCCCcc---c---ccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHh
Confidence 3343343222 1 112334477778888776 55669998753 4444444443
No 427
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.47 E-value=0.43 Score=45.40 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=18.5
Q ss_pred EEEEcCCCChHHHHHHHHhC
Q 003387 182 VAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 182 i~I~G~gGvGKTtLa~~v~~ 201 (824)
|.|+|+.|+||||+|+.+.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988
No 428
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.44 E-value=0.21 Score=55.08 Aligned_cols=102 Identities=11% Similarity=0.147 Sum_probs=58.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCC-CHHHHHHHHHHHhCCC--------CCcccccccC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEY-DADQILDIVIKFLMPS--------SRLSEIMDKN 249 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~-~~~~~~~~i~~~l~~~--------~~~~~~~~~~ 249 (824)
-.-++|.|..|+|||||+..+..+.. ..+=+.++++- +.+.. .+.++.+++...=... .+.+.....-
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~-~~~~~v~V~al--IGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIA-KEHGGYSVFAG--VGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHH-hcCCCeEEEEE--ecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 45789999999999999999876311 11113566666 65543 3456666664321111 0111011111
Q ss_pred HHHHHHHHHHhc---CCCeEEEEEecCCCh-hhHHHHH
Q 003387 250 YEMKKIILHEYL---MTKRYLIVIDDVWSI-DMWDVIQ 283 (824)
Q Consensus 250 ~~~~~~~l~~~L---~~kr~LlVlDdv~~~-~~~~~l~ 283 (824)
....+..+.+++ +++.+|+++||+-.. ..+.++.
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR~A~A~REis 257 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFRFTQAGSEVS 257 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhHHHHHHHHHH
Confidence 222344566666 468999999999654 3344444
No 429
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.44 E-value=0.1 Score=53.05 Aligned_cols=35 Identities=11% Similarity=0.038 Sum_probs=27.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEE
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIT 216 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~ 216 (824)
-.+++|+|+.|+|||||.+.++. +-..=...++++
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g---~l~p~~G~V~l~ 62 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG---LLKPKSGEVLLD 62 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc---cCCCCCCEEEEC
Confidence 57999999999999999999998 223334566665
No 430
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.43 E-value=1 Score=51.36 Aligned_cols=126 Identities=14% Similarity=0.122 Sum_probs=63.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCc-cccC-----CCceeEEEECCCCC-------------CC-CH-HHHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSS-YVKH-----YFDCHAWITEPYSN-------------EY-DA-DQILDIVIKFLM 237 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~-~~~~-----~F~~~~wv~~~vs~-------------~~-~~-~~~~~~i~~~l~ 237 (824)
-..|+|+|+.|+|||||.+.+...- .... .--.+.+++...+. .+ +. ..-.+..+.+++
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence 4579999999999999999995521 1111 11112233210111 01 10 222333333333
Q ss_pred CCCCcc--cccccCHHHH-HHHHHHhcCCCeEEEEEecCCChh---hHHHHHhhCCCCCCCcEEEEEechHHHHh
Q 003387 238 PSSRLS--EIMDKNYEMK-KIILHEYLMTKRYLIVIDDVWSID---MWDVIQEILPDNQNGSRVLITLTDIRIII 306 (824)
Q Consensus 238 ~~~~~~--~~~~~~~~~~-~~~l~~~L~~kr~LlVlDdv~~~~---~~~~l~~~~~~~~~gs~ilvTtR~~~v~~ 306 (824)
-..+.. .....+-.+. .-.+...+-.+.=+||||.--+.- ..+.+..++.+.. |+ ||+.|-++....
T Consensus 428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~-Gt-vl~VSHDr~Fl~ 500 (530)
T COG0488 428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE-GT-VLLVSHDRYFLD 500 (530)
T ss_pred CChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC-Ce-EEEEeCCHHHHH
Confidence 221100 0222333333 345566667788899999887653 2333344444332 65 677777775544
No 431
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.42 E-value=0.054 Score=50.67 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=18.5
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q 003387 181 VVAILDSIGLDKTAFAGEAY 200 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~ 200 (824)
.|+|.|.+|+||||+++.+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999886
No 432
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.40 E-value=0.48 Score=50.56 Aligned_cols=20 Identities=10% Similarity=0.031 Sum_probs=18.4
Q ss_pred EEEEcCCCChHHHHHHHHhC
Q 003387 182 VAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 182 i~I~G~gGvGKTtLa~~v~~ 201 (824)
+.++|+.|.||||+++.+.+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~ 21 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSA 21 (340)
T ss_pred eEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999987
No 433
>PRK13947 shikimate kinase; Provisional
Probab=93.37 E-value=0.05 Score=52.40 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 003387 181 VVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-|.|+||+|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999988
No 434
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.36 E-value=0.51 Score=46.44 Aligned_cols=56 Identities=21% Similarity=0.159 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCChhhHHHHHh---hCC-CCCCCcEEEEEechHHHHh
Q 003387 251 EMKKIILHEYLMTKRYLIVIDDVWSIDMWDVIQE---ILP-DNQNGSRVLITLTDIRIII 306 (824)
Q Consensus 251 ~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~---~~~-~~~~gs~ilvTtR~~~v~~ 306 (824)
+....+|.+.+-=+.=|.|||..++--+.+.+.. ... -..+|+-++|.|..+.++.
T Consensus 149 EkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~ 208 (251)
T COG0396 149 EKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLD 208 (251)
T ss_pred hHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHh
Confidence 3345566666666777999999987644333322 211 1233667888888888887
No 435
>PRK04328 hypothetical protein; Provisional
Probab=93.32 E-value=0.26 Score=50.67 Aligned_cols=52 Identities=15% Similarity=0.236 Sum_probs=35.4
Q ss_pred HHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCC
Q 003387 167 ELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNE 222 (824)
Q Consensus 167 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~ 222 (824)
.+-++|..+=..-.++-|.|.+|.|||+||.++... .. ..-+.++||+ ..+.
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~-~~-~~ge~~lyis--~ee~ 62 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGVYVA--LEEH 62 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHH-HH-hcCCcEEEEE--eeCC
Confidence 344555555445689999999999999999886552 22 2345678887 5553
No 436
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.32 E-value=0.32 Score=54.45 Aligned_cols=101 Identities=24% Similarity=0.140 Sum_probs=55.6
Q ss_pred hHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCC-c
Q 003387 164 RMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSR-L 242 (824)
Q Consensus 164 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~-~ 242 (824)
-...+-+.|..+=..-.++.|.|.+|+|||||+.++..+ ....=..++|++ ..+. ..++... ++.++...+ .
T Consensus 65 Gi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs--~Ees--~~qi~~r-a~rlg~~~~~l 137 (446)
T PRK11823 65 GIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVS--GEES--ASQIKLR-AERLGLPSDNL 137 (446)
T ss_pred CcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE--cccc--HHHHHHH-HHHcCCChhcE
Confidence 345555666655444679999999999999999998773 322234677887 4433 3333222 445543211 0
Q ss_pred ccccccCHHHHHHHHHHhcCCCeEEEEEecCC
Q 003387 243 SEIMDKNYEMKKIILHEYLMTKRYLIVIDDVW 274 (824)
Q Consensus 243 ~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~ 274 (824)
.-....+.+++...+.+ .+.-+||+|.+.
T Consensus 138 ~~~~e~~l~~i~~~i~~---~~~~lVVIDSIq 166 (446)
T PRK11823 138 YLLAETNLEAILATIEE---EKPDLVVIDSIQ 166 (446)
T ss_pred EEeCCCCHHHHHHHHHh---hCCCEEEEechh
Confidence 00112233333333322 244578888774
No 437
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.29 E-value=0.073 Score=51.49 Aligned_cols=23 Identities=22% Similarity=0.032 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+|.|+|++|+||||+|+.+..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~ 26 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAE 26 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999988
No 438
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.27 E-value=0.18 Score=54.58 Aligned_cols=113 Identities=12% Similarity=0.111 Sum_probs=66.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHHHH
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILH 258 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 258 (824)
-..|.|+|..|.||||+.+.+.+ .+......+++.- ..+... ..... ..+-.... .. .+.......++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~ti---Edp~E~--~~~~~-~~~i~q~e---vg-~~~~~~~~~l~ 189 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMID--YINKNAAGHIITI---EDPIEY--VHRNK-RSLINQRE---VG-LDTLSFANALR 189 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEEE---cCChhh--hccCc-cceEEccc---cC-CCCcCHHHHHH
Confidence 46899999999999999999887 5555555666653 111110 00000 00000000 01 11223566678
Q ss_pred HhcCCCeEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEechHHHHh
Q 003387 259 EYLMTKRYLIVIDDVWSIDMWDVIQEILPDNQNGSRVLITLTDIRIII 306 (824)
Q Consensus 259 ~~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~ 306 (824)
..|+...=.|++|.+.+.+.+...... ...|-.|+.|+-..++..
T Consensus 190 ~~lr~~pd~i~vgEird~~~~~~~l~a---a~tGh~v~~T~Ha~~~~~ 234 (343)
T TIGR01420 190 AALREDPDVILIGEMRDLETVELALTA---AETGHLVFGTLHTNSAAQ 234 (343)
T ss_pred HhhccCCCEEEEeCCCCHHHHHHHHHH---HHcCCcEEEEEcCCCHHH
Confidence 888888889999999988766653332 233555776666555444
No 439
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.25 E-value=0.081 Score=51.77 Aligned_cols=110 Identities=15% Similarity=0.101 Sum_probs=57.1
Q ss_pred hhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCc
Q 003387 163 DRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRL 242 (824)
Q Consensus 163 ~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~ 242 (824)
.+..++++..... -..+.|+|..|.||||+++.+.. .+... ...+-+. -....... ..... ++......
T Consensus 12 ~~~~~~l~~~v~~---g~~i~I~G~tGSGKTTll~aL~~--~i~~~-~~~i~ie--d~~E~~~~--~~~~~-~~~~~~~~ 80 (186)
T cd01130 12 PLQAAYLWLAVEA---RKNILISGGTGSGKTTLLNALLA--FIPPD-ERIITIE--DTAELQLP--HPNWV-RLVTRPGN 80 (186)
T ss_pred HHHHHHHHHHHhC---CCEEEEECCCCCCHHHHHHHHHh--hcCCC-CCEEEEC--CccccCCC--CCCEE-EEEEecCC
Confidence 3444444444433 35899999999999999999887 33322 1222222 11000000 00000 00000000
Q ss_pred ccccccCHHHHHHHHHHhcCCCeEEEEEecCCChhhHHHHHhh
Q 003387 243 SEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWSIDMWDVIQEI 285 (824)
Q Consensus 243 ~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~ 285 (824)
..........+.++..++...=.++++.+.+.+.|..+...
T Consensus 81 --~~~~~~~~~~~~l~~~lR~~pd~i~igEir~~ea~~~~~a~ 121 (186)
T cd01130 81 --VEGSGEVTMADLLRSALRMRPDRIIVGEVRGGEALDLLQAM 121 (186)
T ss_pred --CCCCCccCHHHHHHHHhccCCCEEEEEccCcHHHHHHHHHH
Confidence 00111233455666677777778899999998877755543
No 440
>PRK13949 shikimate kinase; Provisional
Probab=93.24 E-value=0.057 Score=51.83 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 003387 181 VVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-|.|+|+.|.||||+++.+.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999988
No 441
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.24 E-value=0.13 Score=47.54 Aligned_cols=76 Identities=16% Similarity=0.120 Sum_probs=43.5
Q ss_pred EEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHhc
Q 003387 182 VAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYL 261 (824)
Q Consensus 182 i~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L 261 (824)
|-++|..|+|||+||+.+.. .... ...-+. ++...+..++....--. ..... +... .+...+
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~~~---~~~~i~--~~~~~~~~dl~g~~~~~-~~~~~---~~~~---~l~~a~---- 63 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LLGR---PVIRIN--CSSDTTEEDLIGSYDPS-NGQFE---FKDG---PLVRAM---- 63 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HHTC---EEEEEE---TTTSTHHHHHCEEET--TTTTC---EEE----CCCTTH----
T ss_pred EEEECCCCCCHHHHHHHHHH--Hhhc---ceEEEE--eccccccccceeeeeec-ccccc---cccc---cccccc----
Confidence 56899999999999999988 4422 222345 77777887766533222 11110 1110 000000
Q ss_pred CCCeEEEEEecCCCh
Q 003387 262 MTKRYLIVIDDVWSI 276 (824)
Q Consensus 262 ~~kr~LlVlDdv~~~ 276 (824)
.+..++|||++...
T Consensus 64 -~~~~il~lDEin~a 77 (139)
T PF07728_consen 64 -RKGGILVLDEINRA 77 (139)
T ss_dssp -HEEEEEEESSCGG-
T ss_pred -cceeEEEECCcccC
Confidence 18899999999843
No 442
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.24 E-value=0.004 Score=60.40 Aligned_cols=90 Identities=17% Similarity=0.068 Sum_probs=74.3
Q ss_pred HhhhcccCcccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccC
Q 003387 514 EKFCGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKL 593 (824)
Q Consensus 514 ~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L 593 (824)
..-+..++...+||++.+.+-.+-..+..+..|..|+++.+.+..+|.+. +.+..+..+++..|+.+.+|.++++++.+
T Consensus 35 v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~-~q~~e~~~~~~~~n~~~~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 35 VREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDA-KQQRETVNAASHKNNHSQQPKSQKKEPHP 113 (326)
T ss_pred hhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhH-HHHHHHHHHHhhccchhhCCccccccCCc
Confidence 34456677788899988887777777778888888889888888888888 88888888888888888889888889999
Q ss_pred ceecCCCccCC
Q 003387 594 RHLNFGSITLP 604 (824)
Q Consensus 594 ~~L~L~~~~~~ 604 (824)
+++++.++.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 98888777654
No 443
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.23 E-value=0.28 Score=50.02 Aligned_cols=81 Identities=12% Similarity=0.083 Sum_probs=43.3
Q ss_pred EEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEE-CCCCCCCCHHHHHHHHHHHhCC--CCCcccccccCHHHHHHHH
Q 003387 181 VVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIT-EPYSNEYDADQILDIVIKFLMP--SSRLSEIMDKNYEMKKIIL 257 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~-~~vs~~~~~~~~~~~i~~~l~~--~~~~~~~~~~~~~~~~~~l 257 (824)
+|+|.|-.|.||||+|+.+.. ..+..=..++.++ ++.-. ++....-+.+...... +-+....+..+.+.+.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~--~l~~~g~~v~vI~~D~yyr-~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l 77 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEH--IFAREGIHPAVVEGDSFHR-YERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELF 77 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHH--HHHhcCCceEEEecccccc-CCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHH
Confidence 589999999999999998876 3322111244454 11111 3333333333333221 1111002445667777777
Q ss_pred HHhcCCC
Q 003387 258 HEYLMTK 264 (824)
Q Consensus 258 ~~~L~~k 264 (824)
+...+++
T Consensus 78 ~~L~~g~ 84 (277)
T cd02029 78 RTYGETG 84 (277)
T ss_pred HHHHcCC
Confidence 7776654
No 444
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=93.22 E-value=0.39 Score=53.15 Aligned_cols=92 Identities=12% Similarity=0.164 Sum_probs=50.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCC-CCCHHHHHHHHHHHhCCCCC--------cccccccC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSN-EYDADQILDIVIKFLMPSSR--------LSEIMDKN 249 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~-~~~~~~~~~~i~~~l~~~~~--------~~~~~~~~ 249 (824)
-..++|+|..|+|||||.+.+.+. ... +..+.+. +.. ..++.+...+....-..... .+......
T Consensus 145 Gq~~~I~G~sG~GKStLl~~I~~~--~~~--~~~vi~~--iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~ 218 (422)
T TIGR02546 145 GQRIGIFAGAGVGKSTLLGMIARG--ASA--DVNVIAL--IGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLK 218 (422)
T ss_pred CCEEEEECCCCCChHHHHHHHhCC--CCC--CEEEEEE--EccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHH
Confidence 457899999999999999999983 322 2233332 222 33444554444332211110 00000111
Q ss_pred HHHHHHHHHHhc--CCCeEEEEEecCCCh
Q 003387 250 YEMKKIILHEYL--MTKRYLIVIDDVWSI 276 (824)
Q Consensus 250 ~~~~~~~l~~~L--~~kr~LlVlDdv~~~ 276 (824)
....+..+.+++ +++++|+++||+-..
T Consensus 219 ~~~~a~~~AE~f~~~g~~Vl~~~Dsltr~ 247 (422)
T TIGR02546 219 AAYTATAIAEYFRDQGKRVLLMMDSLTRF 247 (422)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCchHH
Confidence 112333445555 578999999999643
No 445
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.21 E-value=0.056 Score=50.44 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 003387 181 VVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~ 201 (824)
||.|+|..|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 446
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=93.21 E-value=0.3 Score=45.69 Aligned_cols=21 Identities=10% Similarity=0.121 Sum_probs=19.6
Q ss_pred EEEEcCCCChHHHHHHHHhCC
Q 003387 182 VAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 182 i~I~G~gGvGKTtLa~~v~~~ 202 (824)
|+|+|..|+|||||.+.+.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999885
No 447
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.16 E-value=0.16 Score=53.99 Aligned_cols=114 Identities=14% Similarity=0.091 Sum_probs=59.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHHHH
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILH 258 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 258 (824)
-..+.|+|..|.||||+++.+.. .+.... ..+.+. -..+..... .....-...... .....-...+.+.
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~--~~~~~~-~iv~ie--d~~El~~~~--~~~~~l~~~~~~----~~~~~~~~~~~l~ 212 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVD--EIPKDE-RIITIE--DTREIFLPH--PNYVHLFYSKGG----QGLAKVTPKDLLQ 212 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc--cCCccc-cEEEEc--CccccCCCC--CCEEEEEecCCC----CCcCccCHHHHHH
Confidence 46899999999999999999987 333222 222222 111111100 000000000000 0111123455666
Q ss_pred HhcCCCeEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEechHHHHh
Q 003387 259 EYLMTKRYLIVIDDVWSIDMWDVIQEILPDNQNGSRVLITLTDIRIII 306 (824)
Q Consensus 259 ~~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~ 306 (824)
..|+...=.||+|.+.+.+.|+.+... ..+..| ++.|+...+++.
T Consensus 213 ~~Lr~~pd~ii~gE~r~~e~~~~l~a~-~~g~~~--~i~T~Ha~~~~~ 257 (308)
T TIGR02788 213 SCLRMRPDRIILGELRGDEAFDFIRAV-NTGHPG--SITTLHAGSPEE 257 (308)
T ss_pred HHhcCCCCeEEEeccCCHHHHHHHHHH-hcCCCe--EEEEEeCCCHHH
Confidence 777777778999999998777654433 333322 466665554443
No 448
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.15 E-value=0.37 Score=54.08 Aligned_cols=54 Identities=15% Similarity=0.092 Sum_probs=38.3
Q ss_pred chhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEE
Q 003387 161 LDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIT 216 (824)
Q Consensus 161 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~ 216 (824)
...-...+-++|..+=..-.++.|.|.+|+|||||+.++... ....=..++||+
T Consensus 76 i~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs 129 (454)
T TIGR00416 76 FSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVS 129 (454)
T ss_pred cccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEE
Confidence 444556666777666445689999999999999999988663 222223577887
No 449
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.15 E-value=0.061 Score=49.70 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=26.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccc-CCCceeEEEE
Q 003387 180 SVVAILDSIGLDKTAFAGEAYNSSYVK-HYFDCHAWIT 216 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~~~~~~-~~F~~~~wv~ 216 (824)
.+|.|+|..|+|||||++.+.+ +.. ..+...+..+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~--~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN--ELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHhHcCCceEEEEE
Confidence 4899999999999999999999 454 4555555555
No 450
>PRK06820 type III secretion system ATPase; Validated
Probab=93.14 E-value=0.19 Score=55.42 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
-..++|+|..|+|||||++.+.+.
T Consensus 163 Gqri~I~G~sG~GKStLl~~I~~~ 186 (440)
T PRK06820 163 GQRIGIFAAAGVGKSTLLGMLCAD 186 (440)
T ss_pred CCEEEEECCCCCChHHHHHHHhcc
Confidence 457899999999999999999883
No 451
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=93.12 E-value=0.21 Score=54.89 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
-..++|+|..|+|||||++.+.+.
T Consensus 175 Gqri~I~G~sG~GKTTLL~~Ia~~ 198 (455)
T PRK07960 175 GQRMGLFAGSGVGKSVLLGMMARY 198 (455)
T ss_pred CcEEEEECCCCCCccHHHHHHhCC
Confidence 468999999999999999999983
No 452
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.11 E-value=0.059 Score=47.31 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=18.1
Q ss_pred EEEEcCCCChHHHHHHHHhC
Q 003387 182 VAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 182 i~I~G~gGvGKTtLa~~v~~ 201 (824)
|-|+|.+|+|||++|+.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAK 20 (107)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999887
No 453
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.10 E-value=0.064 Score=47.93 Aligned_cols=22 Identities=18% Similarity=0.370 Sum_probs=19.8
Q ss_pred EEEEcCCCChHHHHHHHHhCCc
Q 003387 182 VAILDSIGLDKTAFAGEAYNSS 203 (824)
Q Consensus 182 i~I~G~gGvGKTtLa~~v~~~~ 203 (824)
|.|+|..|+|||||.+.+.+.+
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998753
No 454
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.07 E-value=0.14 Score=50.49 Aligned_cols=22 Identities=14% Similarity=0.025 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+|.|.|+.|+||||+++.+.+
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~ 22 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAE 22 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999988
No 455
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=93.05 E-value=0.061 Score=56.39 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=19.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
+.|+|+|-|||||||+|..+..
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~ 22 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAA 22 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHH
Confidence 4789999999999998877665
No 456
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=93.03 E-value=0.71 Score=52.05 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
-.+++|+|..|.|||||++.+..-
T Consensus 50 GEivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 50 GEIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 469999999999999999999884
No 457
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.02 E-value=0.072 Score=52.11 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999873
No 458
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=93.01 E-value=0.8 Score=52.68 Aligned_cols=24 Identities=21% Similarity=0.113 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
-.+++|+|..|.|||||.+.+..-
T Consensus 37 Ge~~~liG~NGsGKSTLl~~l~Gl 60 (510)
T PRK15439 37 GEVHALLGGNGAGKSTLMKIIAGI 60 (510)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999873
No 459
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=92.98 E-value=1.2 Score=46.99 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
-.++++.|+.|.|||||.+.+..-
T Consensus 31 Gei~gllG~NGAGKTTllk~l~gl 54 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAGL 54 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999883
No 460
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.97 E-value=0.085 Score=52.21 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
...+|+|+|+.|+||||||+.+..
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999988
No 461
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.95 E-value=0.07 Score=51.62 Aligned_cols=22 Identities=9% Similarity=0.141 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
++|.+.|++|+||||+|+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 462
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.95 E-value=0.018 Score=55.07 Aligned_cols=62 Identities=18% Similarity=0.371 Sum_probs=35.9
Q ss_pred CCCCccEEeeccCCCCccceec--cCcccCccEEEEecCCCCCCC-ccccccCccCcEEEecCCc
Q 003387 738 GFPNLKVLHLKSMLWLEEWTMG--NAAMPKLECLIINPCAYLKKM-PEQLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 738 ~~~~L~~L~L~~~~~l~~l~~~--~~~lp~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~ 799 (824)
.+++++.|.+.+|..+..|..+ -+-.|+|+.|+|++|+.+++- -.++..+++|+.|.+.+.|
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 4455555555666555555322 224567777777777766532 2245566677777777666
No 463
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.94 E-value=0.11 Score=53.91 Aligned_cols=54 Identities=22% Similarity=0.186 Sum_probs=40.7
Q ss_pred cCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHH
Q 003387 174 EGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVI 233 (824)
Q Consensus 174 ~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~ 233 (824)
.+=+.-+++.|+|.+|.|||++|.++.. +.......++||+ ..+. ..++.+.+.
T Consensus 18 GG~p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs--~~e~--~~~l~~~~~ 71 (260)
T COG0467 18 GGLPRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVS--TEES--PEELLENAR 71 (260)
T ss_pred CCCcCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEE--ecCC--HHHHHHHHH
Confidence 4445678999999999999999988877 5666688999998 6553 444444443
No 464
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.93 E-value=0.09 Score=49.56 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=24.4
Q ss_pred EEEEEcCCCChHHHHHHHHhCCccccCC-CceeEE
Q 003387 181 VVAILDSIGLDKTAFAGEAYNSSYVKHY-FDCHAW 214 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~~~~~~~~-F~~~~w 214 (824)
|++|+|+.|+|||||+.++.. +.+.. +...+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~--~l~~~G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVK--ALKARGYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEE
Confidence 689999999999999999998 44433 444333
No 465
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=92.93 E-value=0.2 Score=58.35 Aligned_cols=75 Identities=11% Similarity=0.007 Sum_probs=53.2
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccC-CCceeEEEECCCCCCCCHHHHHHHHH
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKH-YFDCHAWITEPYSNEYDADQILDIVI 233 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~F~~~~wv~~~vs~~~~~~~~~~~i~ 233 (824)
-++++|.++.++.+...+..+. .+-++|+.|+||||+|+.+.+ .+.. .|...+++. ...-+...+++.++
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~~----~~ll~G~pG~GKT~la~~la~--~l~~~~~~~~~~~~---n~~~~~~~~~~~v~ 87 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQKR----NVLLIGEPGVGKSMLAKAMAE--LLPDEELEDILVYP---NPEDPNMPRIVEVP 87 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcCC----CEEEECCCCCCHHHHHHHHHH--HcCchhheeEEEEe---CCCCCchHHHHHHH
Confidence 3678899988887777776543 455999999999999999998 5544 344444443 23335566788888
Q ss_pred HHhCC
Q 003387 234 KFLMP 238 (824)
Q Consensus 234 ~~l~~ 238 (824)
.+++.
T Consensus 88 ~~~g~ 92 (608)
T TIGR00764 88 AGEGR 92 (608)
T ss_pred Hhhch
Confidence 77765
No 466
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=92.91 E-value=0.071 Score=53.43 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=18.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
++|+|.|-||+||||++..+..
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~ 22 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSA 22 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHH
Confidence 4799999999999998876655
No 467
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.91 E-value=0.2 Score=45.39 Aligned_cols=100 Identities=21% Similarity=0.210 Sum_probs=57.0
Q ss_pred CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCc-cCCCCCcceEEeecCCCCCccChhhhhcCCCc
Q 003387 492 DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLNSLPSSLLSNLLNL 570 (824)
Q Consensus 492 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L 570 (824)
+.+|+.+.+.... ..+....|..++.|+.+.+.++ +..++. .+.++..|+++.+.. .+..++...|..+++|
T Consensus 11 ~~~l~~i~~~~~~-----~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 11 CSNLESITFPNTI-----KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp -TT--EEEETST-------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred CCCCCEEEECCCe-----eEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 5577777765421 2355677888888999998875 665554 356677899999965 6667777666778999
Q ss_pred cEeecCCccccccchh-hhccccCceecCCC
Q 003387 571 YTLDMPFSYIDHTADE-FWKMNKLRHLNFGS 600 (824)
Q Consensus 571 ~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~ 600 (824)
+.+++..+ +..++.. +.++ +|+.+.+..
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 99998654 6666544 5565 777775543
No 468
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.89 E-value=0.07 Score=53.11 Aligned_cols=24 Identities=8% Similarity=0.130 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
-.+|+|+|+.|+||||||+.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999983
No 469
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=92.88 E-value=0.88 Score=52.64 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
-.+++|+|..|.|||||++.+...
T Consensus 27 Ge~~~liG~NGsGKSTLl~~l~Gl 50 (530)
T PRK15064 27 GNRYGLIGANGCGKSTFMKILGGD 50 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 470
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=92.86 E-value=0.38 Score=55.20 Aligned_cols=47 Identities=13% Similarity=0.058 Sum_probs=37.0
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-+.++|....+.++++.+..-...-.-|-|+|..|.||+++|+.+++
T Consensus 203 f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 203 FSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred ccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHH
Confidence 45799999998888888764221233477999999999999999976
No 471
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.82 E-value=0.0075 Score=57.58 Aligned_cols=87 Identities=17% Similarity=0.170 Sum_probs=66.0
Q ss_pred CceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCe-eeecCCCCCCccEEeeccCCCCccce-eccCcccCccEE
Q 003387 692 SLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRK-LTCGSYGFPNLKVLHLKSMLWLEEWT-MGNAAMPKLECL 769 (824)
Q Consensus 692 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~-~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~lp~L~~L 769 (824)
.++.++-+++.+......-+.+++.++.|.+.+|...++. +....+.+|+|+.|+|++|+.+++-- ..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4677888888887777888889999999999988765432 22233468999999999999887542 235678999999
Q ss_pred EEecCCCCC
Q 003387 770 IINPCAYLK 778 (824)
Q Consensus 770 ~l~~c~~l~ 778 (824)
.|.+-+...
T Consensus 182 ~l~~l~~v~ 190 (221)
T KOG3864|consen 182 HLYDLPYVA 190 (221)
T ss_pred HhcCchhhh
Confidence 998766543
No 472
>PRK15453 phosphoribulokinase; Provisional
Probab=92.80 E-value=0.44 Score=48.99 Aligned_cols=84 Identities=12% Similarity=0.034 Sum_probs=43.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHH--HhCCCCCcccccccCHHHHHH
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIK--FLMPSSRLSEIMDKNYEMKKI 255 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~~~~~ 255 (824)
...+|+|.|-.|.||||+|+.+.+ ..+..=...+.++..-=..++..++-..+.. .-+.+-+....+..+.+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~--if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~ 81 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK--IFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQ 81 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 356999999999999999998875 2221101234444111122344343333321 112111110024455667777
Q ss_pred HHHHhcCC
Q 003387 256 ILHEYLMT 263 (824)
Q Consensus 256 ~l~~~L~~ 263 (824)
.++...++
T Consensus 82 ~l~~l~~~ 89 (290)
T PRK15453 82 LFREYGET 89 (290)
T ss_pred HHHHHhcC
Confidence 77766553
No 473
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=92.78 E-value=0.076 Score=55.79 Aligned_cols=22 Identities=9% Similarity=0.058 Sum_probs=19.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
++|+|+|-|||||||+|..+..
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~ 23 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAA 23 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 5789999999999998877655
No 474
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=92.77 E-value=0.44 Score=52.87 Aligned_cols=99 Identities=16% Similarity=0.142 Sum_probs=53.1
Q ss_pred eEEEEEEcCCCChHHHHH-HHHhCCccccCCCcee-EEEECCCCCCC-CHHHHHHHHHHHhCCCCCcc--cccccCH---
Q 003387 179 LSVVAILDSIGLDKTAFA-GEAYNSSYVKHYFDCH-AWITEPYSNEY-DADQILDIVIKFLMPSSRLS--EIMDKNY--- 250 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa-~~v~~~~~~~~~F~~~-~wv~~~vs~~~-~~~~~~~~i~~~l~~~~~~~--~~~~~~~--- 250 (824)
-.-++|.|-.|+|||||| ..+.|. . .-+.+ +++- +.+.. .+.++.+++...=......- ...+.+.
T Consensus 141 GQR~~I~g~~g~GKt~Lal~~I~~q--~--~~dv~cV~~~--IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r 214 (485)
T CHL00059 141 GQRELIIGDRQTGKTAVATDTILNQ--K--GQNVICVYVA--IGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQ 214 (485)
T ss_pred CCEEEeecCCCCCHHHHHHHHHHhc--c--cCCeEEEEEE--ecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHH
Confidence 457899999999999995 566663 2 23433 5666 66543 44455555544321110000 0001111
Q ss_pred ---HHHHHHHHHhc--CCCeEEEEEecCCCh-hhHHHHH
Q 003387 251 ---EMKKIILHEYL--MTKRYLIVIDDVWSI-DMWDVIQ 283 (824)
Q Consensus 251 ---~~~~~~l~~~L--~~kr~LlVlDdv~~~-~~~~~l~ 283 (824)
.-.+..+.+++ +++.+|+|+||+-.. ..+.++.
T Consensus 215 ~~ap~~a~aiAEyfr~~G~~VLlv~DdlTr~A~A~REis 253 (485)
T CHL00059 215 YLAPYTGAALAEYFMYRGRHTLIIYDDLSKQAQAYRQMS 253 (485)
T ss_pred HHHHHHHhhHHHHHHHcCCCEEEEEcChhHHHHHHHHHH
Confidence 11122233333 579999999999764 3455554
No 475
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.67 E-value=0.14 Score=48.72 Aligned_cols=25 Identities=8% Similarity=0.181 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCc
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSS 203 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~ 203 (824)
-.++.|.|+.|+|||||+++++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4688999999999999999999954
No 476
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.66 E-value=0.2 Score=51.92 Aligned_cols=91 Identities=16% Similarity=0.094 Sum_probs=48.8
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCC---CcccccccCHHHH
Q 003387 177 PQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSS---RLSEIMDKNYEMK 253 (824)
Q Consensus 177 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~~ 253 (824)
.+..+|.|+|..|.|||||+..+.+ ....... .+.+..+.....|. +.++..+... .....--.+...+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~--~l~~~~~-~~VI~gD~~t~~Da-----~rI~~~g~pvvqi~tG~~Chl~a~mv 173 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM--RLKDSVP-CAVIEGDQQTVNDA-----ARIRATGTPAIQVNTGKGCHLDAQMI 173 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HhccCCC-EEEECCCcCcHHHH-----HHHHhcCCcEEEecCCCCCcCcHHHH
Confidence 4689999999999999999999988 4444443 33332112222122 2233332210 0000011233444
Q ss_pred HHHHHHhcCCCeEEEEEecCCC
Q 003387 254 KIILHEYLMTKRYLIVIDDVWS 275 (824)
Q Consensus 254 ~~~l~~~L~~kr~LlVlDdv~~ 275 (824)
...+...-...-=++|+++|-.
T Consensus 174 ~~Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 174 ADAAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHHHHhhcCCcEEEEECCCC
Confidence 5555554444456778899864
No 477
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.66 E-value=0.082 Score=48.76 Aligned_cols=43 Identities=23% Similarity=0.115 Sum_probs=32.2
Q ss_pred EEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCC
Q 003387 181 VVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMP 238 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~ 238 (824)
+|.|-|.+|.||||+|+.+.++ ..-.| +| ...++++|++.-+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~--~gl~~---------vs----aG~iFR~~A~e~gm 44 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH--LGLKL---------VS----AGTIFREMARERGM 44 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH--hCCce---------ee----ccHHHHHHHHHcCC
Confidence 7899999999999999999984 22111 22 34678888887765
No 478
>PRK13975 thymidylate kinase; Provisional
Probab=92.65 E-value=0.081 Score=52.22 Aligned_cols=22 Identities=18% Similarity=0.009 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+|.|.|+.|+||||+|+.+.+
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~ 24 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAE 24 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999998
No 479
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.64 E-value=0.1 Score=45.27 Aligned_cols=22 Identities=32% Similarity=0.217 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHh
Q 003387 179 LSVVAILDSIGLDKTAFAGEAY 200 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~ 200 (824)
-..++|+|..|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999986
No 480
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.62 E-value=0.69 Score=50.80 Aligned_cols=76 Identities=22% Similarity=0.196 Sum_probs=47.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHHH
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIIL 257 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 257 (824)
.+.-+-+-|++|+|||+||..+..+ ..|..+=-++ .. + +-..++......+
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiS----pe----~-----------------miG~sEsaKc~~i 587 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIIS----PE----D-----------------MIGLSESAKCAHI 587 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeC----hH----H-----------------ccCccHHHHHHHH
Confidence 5677778999999999999999873 5565443332 11 0 1122333334444
Q ss_pred HHhc----CCCeEEEEEecCCChhhHHHH
Q 003387 258 HEYL----MTKRYLIVIDDVWSIDMWDVI 282 (824)
Q Consensus 258 ~~~L----~~kr~LlVlDdv~~~~~~~~l 282 (824)
++.. +..=-.||+||+...-+|-.+
T Consensus 588 ~k~F~DAYkS~lsiivvDdiErLiD~vpI 616 (744)
T KOG0741|consen 588 KKIFEDAYKSPLSIIVVDDIERLLDYVPI 616 (744)
T ss_pred HHHHHHhhcCcceEEEEcchhhhhccccc
Confidence 4433 445678999999776555433
No 481
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.62 E-value=0.28 Score=50.48 Aligned_cols=81 Identities=12% Similarity=0.092 Sum_probs=47.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCc--cccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHH
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSS--YVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKII 256 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~--~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 256 (824)
-++|-+.|++|-|||+|++++++.- |....|.....+. ++. ..++..-... ...-+..+-+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE--ins----hsLFSKWFsE----------SgKlV~kmF~k 240 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE--INS----HSLFSKWFSE----------SGKLVAKMFQK 240 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE--Eeh----hHHHHHHHhh----------hhhHHHHHHHH
Confidence 4889999999999999999999963 3344554444444 221 1222222111 11123445555
Q ss_pred HHHhcCCCe--EEEEEecCCC
Q 003387 257 LHEYLMTKR--YLIVIDDVWS 275 (824)
Q Consensus 257 l~~~L~~kr--~LlVlDdv~~ 275 (824)
|.+.++++. +++.+|.|.+
T Consensus 241 I~ELv~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 241 IQELVEDRGNLVFVLIDEVES 261 (423)
T ss_pred HHHHHhCCCcEEEEEeHHHHH
Confidence 566665543 4556688854
No 482
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=92.59 E-value=0.14 Score=54.02 Aligned_cols=47 Identities=15% Similarity=0.336 Sum_probs=41.4
Q ss_pred CCCceechhhHHHHHHHHHcC----CCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDLLIEG----PPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
+..++|+++.++++++.+... +..-+|+-.+|+.|.||||||..+-+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 358999999999999999864 34579999999999999999998877
No 483
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.59 E-value=0.068 Score=29.42 Aligned_cols=15 Identities=33% Similarity=0.394 Sum_probs=5.3
Q ss_pred CccEeecCCcccccc
Q 003387 569 NLYTLDMPFSYIDHT 583 (824)
Q Consensus 569 ~L~~L~L~~~~l~~l 583 (824)
+|++|+|++|.++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444443
No 484
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=92.59 E-value=0.082 Score=55.35 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=18.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
++|+|+|-|||||||+|..+..
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~ 23 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTA 23 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHH
Confidence 5789999999999998877655
No 485
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.58 E-value=0.11 Score=49.93 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=21.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCccccCC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYNSSYVKHY 208 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~ 208 (824)
..|-+.|.+|+||||+|+.+.. ..++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak--~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK--ELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH--HHHHh
Confidence 3567899999999999999887 44433
No 486
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=92.49 E-value=0.097 Score=51.45 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..+|||+|+.|+||||.|+.+-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 46899999999999999988766
No 487
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.46 E-value=0.48 Score=50.45 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
...+|+++|++|+||||++..+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999999887
No 488
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=92.45 E-value=0.25 Score=56.64 Aligned_cols=94 Identities=18% Similarity=0.137 Sum_probs=57.5
Q ss_pred CCceechhhHHHHHHHHHc-----------CCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCC
Q 003387 156 RDTVGLDDRMEELLDLLIE-----------GPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYD 224 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~ 224 (824)
.++.|.+..++.+.+.+.. +-...+.+-++|++|.|||.||+++.+ .....|-.+.+-.
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~v~~~~-------- 311 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFISVKGSE-------- 311 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEEeeCHH--------
Confidence 4566766666665554432 113567889999999999999999999 5555553322211
Q ss_pred HHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHhcCCCeEEEEEecCCC
Q 003387 225 ADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWS 275 (824)
Q Consensus 225 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 275 (824)
++.. .-..............-+.....|.+|+++.
T Consensus 312 -------l~sk---------~vGesek~ir~~F~~A~~~~p~iiFiDEiDs 346 (494)
T COG0464 312 -------LLSK---------WVGESEKNIRELFEKARKLAPSIIFIDEIDS 346 (494)
T ss_pred -------Hhcc---------ccchHHHHHHHHHHHHHcCCCcEEEEEchhh
Confidence 1110 1111233344444445567889999999964
No 489
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.45 E-value=0.09 Score=50.64 Aligned_cols=23 Identities=9% Similarity=0.208 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+.|.|+|+.|.||||+|+.+.+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~ 26 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQ 26 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHH
Confidence 35699999999999999999988
No 490
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=92.45 E-value=0.1 Score=47.97 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=21.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
.+++|+|..|.|||||.+.+...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 58999999999999999999884
No 491
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=92.45 E-value=0.45 Score=50.41 Aligned_cols=100 Identities=15% Similarity=0.148 Sum_probs=56.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCC-CHHHHHHHHHHHhCCC--CC-ccc------cccc
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEY-DADQILDIVIKFLMPS--SR-LSE------IMDK 248 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~-~~~~~~~~i~~~l~~~--~~-~~~------~~~~ 248 (824)
-..++|.|..|+|||+|++.+.+.. +-+.++++- +.+.. .+.+++.++-+..... .+ ... ..++
T Consensus 157 Gqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~--iGERg~Ev~e~l~ef~~l~~~~~~~~~m~rtvlV~nts~~ 230 (369)
T cd01134 157 GGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVG--CGERGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNM 230 (369)
T ss_pred CCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEE--eCCChHHHHHHHHHHHhhccccccCCccceEEEEEECCCC
Confidence 3488999999999999999999942 235677776 66553 3345555543321110 00 000 0111
Q ss_pred CH------HHHHHHHHHhc--CCCeEEEEEecCCCh-hhHHHHHh
Q 003387 249 NY------EMKKIILHEYL--MTKRYLIVIDDVWSI-DMWDVIQE 284 (824)
Q Consensus 249 ~~------~~~~~~l~~~L--~~kr~LlVlDdv~~~-~~~~~l~~ 284 (824)
.. --....+.+++ +++.+|+++|++..- +...++..
T Consensus 231 p~~~R~~s~yta~tiAEYfrd~G~dVll~~Ds~tR~A~A~REIs~ 275 (369)
T cd01134 231 PVAAREASIYTGITIAEYFRDMGYNVALMADSTSRWAEALREISG 275 (369)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcChhHHHHHHHHHHH
Confidence 11 11122344444 579999999998433 34444443
No 492
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=92.44 E-value=0.43 Score=56.56 Aligned_cols=48 Identities=15% Similarity=0.077 Sum_probs=38.3
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
.+.++|....+.++.+.+..-...-.-|-|+|..|+||+++|+.+++.
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHh
Confidence 456899999999888887753322334679999999999999999983
No 493
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.41 E-value=0.18 Score=53.67 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 165 MEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 165 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
...+.+.+........+|+|.|.+|+|||||+..+..
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3456666654445688999999999999999998766
No 494
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=92.40 E-value=0.3 Score=48.27 Aligned_cols=36 Identities=14% Similarity=-0.151 Sum_probs=29.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEE
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIT 216 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~ 216 (824)
-..|+|=|+.|+||||.++.++. ..+.....++|..
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~--~l~~~g~~v~~tr 38 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKE--RLEERGIKVVLTR 38 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEe
Confidence 46799999999999999999999 6666655667665
No 495
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=92.39 E-value=0.51 Score=52.67 Aligned_cols=99 Identities=13% Similarity=0.022 Sum_probs=55.8
Q ss_pred eEEEEEEcCCCChHHHHH-HHHhCCccccCCCce-eEEEECCCCCCC-CHHHHHHHHHHHhCCCC--------Ccccccc
Q 003387 179 LSVVAILDSIGLDKTAFA-GEAYNSSYVKHYFDC-HAWITEPYSNEY-DADQILDIVIKFLMPSS--------RLSEIMD 247 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa-~~v~~~~~~~~~F~~-~~wv~~~vs~~~-~~~~~~~~i~~~l~~~~--------~~~~~~~ 247 (824)
-.-++|.|-.|+|||||| ..+.|. . .-+. ++++- +.+.. .+.++.+++...=.... +.+....
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~q--~--~~dv~~V~~~--IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r 235 (497)
T TIGR03324 162 GQRELILGDRQTGKTAIAIDTILNQ--K--GRNVLCIYCA--IGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQ 235 (497)
T ss_pred CCEEEeecCCCCCHHHHHHHHHHHh--c--CCCcEEEEEE--eccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHH
Confidence 457899999999999996 577773 2 2343 56666 66653 34455555544321110 1010000
Q ss_pred cCHHHHHHHHHHhc--CCCeEEEEEecCCCh-hhHHHHH
Q 003387 248 KNYEMKKIILHEYL--MTKRYLIVIDDVWSI-DMWDVIQ 283 (824)
Q Consensus 248 ~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~-~~~~~l~ 283 (824)
.-..-.+..+.+++ +++.+|||+||+-.. ..+.++.
T Consensus 236 ~~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~A~A~REis 274 (497)
T TIGR03324 236 YIAPYAATSIGEHFMEQGRDVLIVYDDLTQHARAYRELS 274 (497)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcChhHHHHHHHHHH
Confidence 01111233344544 589999999999754 3444443
No 496
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=92.37 E-value=0.092 Score=52.82 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=21.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
.-|.|+|++|+|||||+..+.++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~ 28 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGD 28 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcC
Confidence 56899999999999999999986
No 497
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=92.37 E-value=0.35 Score=51.26 Aligned_cols=59 Identities=20% Similarity=0.183 Sum_probs=41.6
Q ss_pred CCCceechhhHHH---HHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEE
Q 003387 155 SRDTVGLDDRMEE---LLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWI 215 (824)
Q Consensus 155 ~~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv 215 (824)
...+||..+.++. +++++..+.-.-+.|-+.|++|.|||+||..+.+ +.......+...
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~--eLG~~~PF~~is 84 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAK--ELGEDVPFVSIS 84 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHH--HCTTTS-EEEEE
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHH--HhCCCCCeeEcc
Confidence 4689998777665 6788877765567888999999999999999999 676655544443
No 498
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=92.36 E-value=0.21 Score=58.04 Aligned_cols=75 Identities=12% Similarity=0.032 Sum_probs=57.1
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCcccc-CCCceeEEEECCCCCCCCHHHHHHHHH
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVK-HYFDCHAWITEPYSNEYDADQILDIVI 233 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~-~~F~~~~wv~~~vs~~~~~~~~~~~i~ 233 (824)
-++++|.+..++.+...+..+ +.+-++|.+|.||||+|+.+.+ .+. ..|+..+|.. - ..-+...+++.++
T Consensus 30 ~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~--~l~~~~~~~~~~~~--n-p~~~~~~~~~~v~ 100 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAE--LLPKEELQDILVYP--N-PEDPNNPKIRTVP 100 (637)
T ss_pred HHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHH--HcChHhHHHheEee--C-CCcchHHHHHHHH
Confidence 357889988888888777654 3688999999999999999987 343 3457888886 3 4447778888888
Q ss_pred HHhCC
Q 003387 234 KFLMP 238 (824)
Q Consensus 234 ~~l~~ 238 (824)
.+++.
T Consensus 101 ~~~G~ 105 (637)
T PRK13765 101 AGKGK 105 (637)
T ss_pred HhcCH
Confidence 76665
No 499
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.35 E-value=0.43 Score=53.39 Aligned_cols=38 Identities=21% Similarity=0.213 Sum_probs=26.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEE
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIT 216 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~ 216 (824)
-+|++++|..|+||||++.++......+..-..+..|+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~ 293 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLT 293 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 47999999999999999999987322222122455565
No 500
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=92.34 E-value=2 Score=48.10 Aligned_cols=75 Identities=16% Similarity=0.111 Sum_probs=49.4
Q ss_pred ceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhC
Q 003387 158 TVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLM 237 (824)
Q Consensus 158 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~ 237 (824)
..|...-...+-+++. +-..-.++.|-|.+|+||||+|..+..+.-.+.. ..++|++ -+.+..++...++....
T Consensus 174 ~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g-~~v~~fS----lEm~~~~l~~Rl~~~~~ 247 (421)
T TIGR03600 174 LTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREG-KPVLFFS----LEMSAEQLGERLLASKS 247 (421)
T ss_pred CcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCC-CcEEEEE----CCCCHHHHHHHHHHHHc
Confidence 4455555666666554 4334568899999999999999988753221222 2455554 44577888888877655
Q ss_pred C
Q 003387 238 P 238 (824)
Q Consensus 238 ~ 238 (824)
+
T Consensus 248 ~ 248 (421)
T TIGR03600 248 G 248 (421)
T ss_pred C
Confidence 4
Done!