Query 003387
Match_columns 824
No_of_seqs 468 out of 4258
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 23:28:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003387.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003387hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 5.2E-43 1.8E-47 402.8 22.3 278 159-452 131-468 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 1.1E-34 3.8E-39 369.1 23.0 282 151-452 119-449 (1249)
3 1vt4_I APAF-1 related killer D 100.0 2E-34 6.8E-39 333.9 16.4 269 157-449 129-437 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 8E-31 2.7E-35 306.0 20.8 278 153-451 121-448 (591)
5 3vq2_A TLR4, TOLL-like recepto 99.9 2.9E-25 9.8E-30 260.3 23.0 324 469-799 30-532 (606)
6 3rgz_A Protein brassinosteroid 99.9 1.8E-26 6E-31 277.2 12.6 343 471-823 294-765 (768)
7 3o6n_A APL1; leucine-rich repe 99.9 2.1E-25 7.1E-30 246.4 19.5 289 492-799 44-350 (390)
8 3oja_B Anopheles plasmodium-re 99.9 2.1E-25 7.4E-30 260.1 19.4 289 492-799 50-356 (597)
9 4ecn_A Leucine-rich repeat pro 99.9 5E-25 1.7E-29 263.0 18.7 292 492-799 490-838 (876)
10 2id5_A Lingo-1, leucine rich r 99.9 2.3E-24 8E-29 244.8 22.5 303 484-799 23-331 (477)
11 3v47_A TOLL-like receptor 5B a 99.9 2.4E-24 8.4E-29 243.1 21.2 321 469-799 28-406 (455)
12 4fmz_A Internalin; leucine ric 99.9 7.3E-24 2.5E-28 230.1 22.9 299 470-799 43-344 (347)
13 2z63_A TOLL-like receptor 4, v 99.9 2.3E-24 8E-29 250.6 20.2 325 469-799 26-529 (570)
14 4ecn_A Leucine-rich repeat pro 99.9 3.5E-24 1.2E-28 255.7 21.6 294 470-778 490-841 (876)
15 4eco_A Uncharacterized protein 99.9 7.1E-25 2.4E-29 257.2 14.5 292 492-799 248-598 (636)
16 4eco_A Uncharacterized protein 99.9 4E-24 1.4E-28 250.8 20.0 315 470-799 248-630 (636)
17 1o6v_A Internalin A; bacterial 99.9 7E-24 2.4E-28 239.8 21.0 301 471-799 46-364 (466)
18 1o6v_A Internalin A; bacterial 99.9 2.5E-23 8.6E-28 235.3 23.8 303 469-799 66-386 (466)
19 4fmz_A Internalin; leucine ric 99.9 1.2E-23 4.1E-28 228.4 20.1 279 492-799 43-322 (347)
20 3rgz_A Protein brassinosteroid 99.9 3.2E-24 1.1E-28 257.6 16.6 315 469-799 198-549 (768)
21 3t6q_A CD180 antigen; protein- 99.9 1.9E-23 6.3E-28 244.9 21.9 273 522-799 255-558 (606)
22 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.9E-23 6.5E-28 242.2 19.8 124 474-605 34-160 (562)
23 3vq2_A TLR4, TOLL-like recepto 99.9 2E-23 6.7E-28 244.6 18.9 137 483-624 22-162 (606)
24 3o6n_A APL1; leucine-rich repe 99.9 5.5E-23 1.9E-27 226.9 21.2 269 519-799 43-329 (390)
25 3t6q_A CD180 antigen; protein- 99.9 2.5E-23 8.6E-28 243.8 19.5 322 469-799 31-436 (606)
26 2z7x_B TOLL-like receptor 1, v 99.9 1.9E-23 6.5E-28 240.0 18.0 125 469-603 19-150 (520)
27 3v47_A TOLL-like receptor 5B a 99.9 5.9E-23 2E-27 231.8 20.3 304 487-799 25-382 (455)
28 2z81_A CD282 antigen, TOLL-lik 99.9 4.7E-23 1.6E-27 238.4 19.4 321 469-799 24-508 (549)
29 2z81_A CD282 antigen, TOLL-lik 99.9 7.9E-23 2.7E-27 236.5 19.5 306 484-799 17-421 (549)
30 2z7x_B TOLL-like receptor 1, v 99.9 2.5E-22 8.6E-27 230.6 22.9 306 474-799 3-479 (520)
31 2z63_A TOLL-like receptor 4, v 99.9 5.2E-23 1.8E-27 239.3 17.2 136 485-624 20-158 (570)
32 4fcg_A Uncharacterized protein 99.9 6.6E-23 2.3E-27 220.1 16.6 232 519-798 79-311 (328)
33 3oja_B Anopheles plasmodium-re 99.9 1.1E-22 3.6E-27 237.3 19.3 269 519-799 49-335 (597)
34 3bz5_A Internalin-J, INLJ; leu 99.9 5.5E-22 1.9E-26 222.6 22.4 290 471-799 42-350 (457)
35 1ziw_A TOLL-like receptor 3; i 99.9 3.6E-22 1.2E-26 237.2 21.9 317 470-798 24-363 (680)
36 2id5_A Lingo-1, leucine rich r 99.9 6.3E-22 2.2E-26 224.7 21.9 270 521-799 32-307 (477)
37 1ziw_A TOLL-like receptor 3; i 99.9 4.1E-22 1.4E-26 236.7 21.2 321 470-798 48-440 (680)
38 1ogq_A PGIP-2, polygalacturona 99.9 4.6E-23 1.6E-27 220.0 10.1 248 493-799 50-302 (313)
39 3j0a_A TOLL-like receptor 5; m 99.9 4.5E-22 1.5E-26 241.4 19.7 316 469-799 22-392 (844)
40 3j0a_A TOLL-like receptor 5; m 99.9 1.2E-21 4.2E-26 237.6 23.2 108 492-604 72-187 (844)
41 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 8.5E-22 2.9E-26 228.3 19.8 297 492-799 30-484 (562)
42 3bz5_A Internalin-J, INLJ; leu 99.9 9.5E-22 3.2E-26 220.7 19.2 270 492-799 41-329 (457)
43 1xku_A Decorin; proteoglycan, 99.9 2E-21 6.9E-26 209.2 21.0 282 494-798 32-329 (330)
44 2ft3_A Biglycan; proteoglycan, 99.9 1.1E-21 3.7E-26 211.5 17.7 283 494-799 34-331 (332)
45 1ogq_A PGIP-2, polygalacturona 99.9 1.9E-22 6.7E-27 215.1 9.3 223 471-728 50-281 (313)
46 2ft3_A Biglycan; proteoglycan, 99.9 1.7E-21 5.8E-26 210.0 14.6 285 473-775 35-331 (332)
47 4g8a_A TOLL-like receptor 4; l 99.9 1.1E-20 3.8E-25 222.5 22.3 323 469-799 50-578 (635)
48 1xku_A Decorin; proteoglycan, 99.9 1E-20 3.5E-25 203.7 19.2 285 473-775 33-330 (330)
49 1jl5_A Outer protein YOPM; leu 99.8 6E-20 2E-24 205.9 20.8 290 469-799 89-407 (454)
50 4fcg_A Uncharacterized protein 99.8 1.2E-20 4.1E-25 202.5 13.5 223 492-775 80-312 (328)
51 2z80_A TOLL-like receptor 2, v 99.8 2.7E-20 9.2E-25 202.4 15.0 252 521-799 52-312 (353)
52 2z66_A Variable lymphocyte rec 99.8 2.2E-20 7.5E-25 198.8 13.7 225 521-799 28-259 (306)
53 2z80_A TOLL-like receptor 2, v 99.8 1.8E-20 6.3E-25 203.7 11.3 261 481-777 40-314 (353)
54 2z66_A Variable lymphocyte rec 99.8 5.7E-20 2E-24 195.6 12.9 213 483-728 18-236 (306)
55 3zyi_A Leucine-rich repeat-con 99.8 2E-19 6.8E-24 202.4 17.9 240 524-799 57-301 (452)
56 4g8a_A TOLL-like receptor 4; l 99.8 4.5E-19 1.5E-23 208.7 20.3 135 485-623 44-181 (635)
57 3g06_A SSPH2 (leucine-rich rep 99.8 7.2E-19 2.5E-23 203.2 21.3 257 492-799 39-295 (622)
58 3zyj_A Leucine-rich repeat-con 99.8 3.7E-19 1.3E-23 199.4 17.7 238 524-775 46-290 (440)
59 1jl5_A Outer protein YOPM; leu 99.8 7.6E-19 2.6E-23 196.9 19.4 289 469-799 109-427 (454)
60 1ozn_A Reticulon 4 receptor; N 99.8 1E-19 3.5E-24 191.5 11.5 248 521-798 32-284 (285)
61 3o53_A Protein LRIM1, AGAP0063 99.8 6.1E-21 2.1E-25 204.0 1.6 247 512-778 25-276 (317)
62 3ogk_B Coronatine-insensitive 99.8 5.6E-20 1.9E-24 214.6 9.3 324 471-799 112-524 (592)
63 3zyi_A Leucine-rich repeat-con 99.8 7.5E-19 2.6E-23 197.7 18.0 235 482-727 64-302 (452)
64 3zyj_A Leucine-rich repeat-con 99.8 6.5E-19 2.2E-23 197.5 16.7 234 483-727 54-291 (440)
65 3oja_A Leucine-rich immune mol 99.8 3.5E-20 1.2E-24 209.9 5.7 235 518-772 31-270 (487)
66 3g06_A SSPH2 (leucine-rich rep 99.8 1.3E-18 4.3E-23 201.2 18.7 262 472-782 41-302 (622)
67 1z7x_W Ribonuclease inhibitor; 99.8 2.4E-21 8.4E-26 218.8 -4.7 306 492-799 27-409 (461)
68 3o53_A Protein LRIM1, AGAP0063 99.8 7.5E-20 2.6E-24 195.6 6.5 261 521-799 10-273 (317)
69 3oja_A Leucine-rich immune mol 99.8 2.4E-19 8.2E-24 203.0 9.1 244 535-796 21-270 (487)
70 1z7x_W Ribonuclease inhibitor; 99.8 3.4E-20 1.2E-24 209.4 0.7 304 493-799 3-381 (461)
71 1ozn_A Reticulon 4 receptor; N 99.8 6.9E-19 2.4E-23 185.1 9.8 216 482-729 21-239 (285)
72 3ogk_B Coronatine-insensitive 99.7 6.4E-19 2.2E-23 205.7 7.4 305 492-798 191-548 (592)
73 1wwl_A Monocyte differentiatio 99.7 4E-19 1.4E-23 189.4 4.4 82 523-604 65-162 (312)
74 1wwl_A Monocyte differentiatio 99.7 4.9E-20 1.7E-24 196.5 -3.4 250 516-799 38-307 (312)
75 2p1m_B Transport inhibitor res 99.7 5.5E-19 1.9E-23 206.4 1.2 323 471-799 105-517 (594)
76 3rfs_A Internalin B, repeat mo 99.7 2.9E-17 1E-21 171.2 11.3 85 517-604 37-122 (272)
77 1h6u_A Internalin H; cell adhe 99.7 5.2E-17 1.8E-21 172.5 13.2 193 518-729 38-231 (308)
78 1p9a_G Platelet glycoprotein I 99.7 1.2E-16 4E-21 168.1 15.3 200 517-751 6-206 (290)
79 2o6q_A Variable lymphocyte rec 99.7 8.7E-17 3E-21 167.5 14.2 82 521-604 16-98 (270)
80 2ast_B S-phase kinase-associat 99.7 3.9E-18 1.3E-22 183.9 2.9 257 494-785 48-314 (336)
81 2z62_A TOLL-like receptor 4, v 99.7 1.2E-16 4.2E-21 167.0 14.2 200 522-729 29-238 (276)
82 2ast_B S-phase kinase-associat 99.7 1.8E-17 6.1E-22 178.7 7.9 226 521-774 47-282 (336)
83 2z62_A TOLL-like receptor 4, v 99.7 1.1E-16 3.7E-21 167.4 13.5 78 525-604 11-89 (276)
84 2p1m_B Transport inhibitor res 99.7 6.5E-18 2.2E-22 197.2 3.0 304 492-798 155-541 (594)
85 2o6q_A Variable lymphocyte rec 99.7 4.5E-16 1.5E-20 162.1 15.5 199 494-727 17-217 (270)
86 2ca6_A RAN GTPase-activating p 99.7 1.3E-17 4.3E-22 183.6 1.9 263 513-797 24-339 (386)
87 3rfs_A Internalin B, repeat mo 99.7 2E-16 6.7E-21 165.0 10.8 229 521-790 19-248 (272)
88 2ca6_A RAN GTPase-activating p 99.7 4.7E-18 1.6E-22 187.1 -2.2 254 523-799 11-314 (386)
89 2xwt_C Thyrotropin receptor; s 99.6 2.1E-16 7.3E-21 161.3 9.0 208 533-799 23-237 (239)
90 1h6u_A Internalin H; cell adhe 99.6 9.1E-16 3.1E-20 162.9 13.3 192 540-775 37-228 (308)
91 2xwt_C Thyrotropin receptor; s 99.6 4.7E-16 1.6E-20 158.7 9.9 84 521-604 31-118 (239)
92 4ay9_X Follicle-stimulating ho 99.6 1.9E-15 6.6E-20 163.6 13.5 218 522-773 31-255 (350)
93 3m19_A Variable lymphocyte rec 99.6 6.7E-15 2.3E-19 151.4 13.5 178 521-728 14-192 (251)
94 4glp_A Monocyte differentiatio 99.6 3.1E-15 1.1E-19 159.1 11.3 228 492-776 63-306 (310)
95 3goz_A Leucine-rich repeat-con 99.6 8.1E-16 2.8E-20 167.5 6.2 93 512-604 13-122 (362)
96 1p9a_G Platelet glycoprotein I 99.6 1.4E-14 4.7E-19 152.3 13.7 144 472-623 11-156 (290)
97 4glp_A Monocyte differentiatio 99.6 1.4E-15 4.7E-20 161.9 6.0 104 689-799 195-305 (310)
98 3goz_A Leucine-rich repeat-con 99.6 4.8E-16 1.6E-20 169.3 1.4 247 525-775 2-295 (362)
99 1h6t_A Internalin B; cell adhe 99.6 6.6E-15 2.3E-19 154.8 10.0 173 517-729 42-214 (291)
100 1m9s_A Internalin B; cell inva 99.5 6E-15 2E-19 170.3 9.9 83 518-604 40-122 (605)
101 3cvr_A Invasion plasmid antige 99.5 1.5E-14 5.2E-19 165.0 10.8 75 521-604 59-133 (571)
102 2o6s_A Variable lymphocyte rec 99.5 6.3E-14 2.1E-18 139.6 12.4 180 524-765 10-190 (208)
103 1m9s_A Internalin B; cell inva 99.5 2.4E-14 8.2E-19 165.2 9.4 189 522-729 22-211 (605)
104 3qfl_A MLA10; coiled-coil, (CC 99.5 3.3E-14 1.1E-18 125.0 7.9 81 4-98 2-85 (115)
105 1h6t_A Internalin B; cell adhe 99.5 8.9E-14 3.1E-18 146.1 11.3 184 525-751 28-211 (291)
106 3m19_A Variable lymphocyte rec 99.5 2.5E-13 8.7E-18 139.5 14.4 169 474-648 17-190 (251)
107 4ezg_A Putative uncharacterize 99.5 8.3E-14 2.8E-18 137.4 8.8 153 518-728 41-194 (197)
108 4ay9_X Follicle-stimulating ho 99.5 1.8E-13 6.1E-18 148.1 11.9 240 524-797 12-255 (350)
109 4ezg_A Putative uncharacterize 99.4 1.8E-13 6.3E-18 134.9 9.5 153 540-751 40-192 (197)
110 1xeu_A Internalin C; cellular 99.4 8.8E-14 3E-18 143.8 6.5 40 688-729 147-186 (263)
111 2o6s_A Variable lymphocyte rec 99.4 3.5E-13 1.2E-17 134.2 9.3 132 487-623 22-156 (208)
112 2v9t_B SLIT homolog 2 protein 99.4 8.5E-13 2.9E-17 132.5 11.9 151 524-728 14-165 (220)
113 1dce_A Protein (RAB geranylger 99.4 8E-15 2.7E-19 168.2 -4.2 120 664-795 442-567 (567)
114 3cvr_A Invasion plasmid antige 99.4 1.6E-12 5.5E-17 148.3 14.6 189 545-789 60-255 (571)
115 2v70_A SLIT-2, SLIT homolog 2 99.4 1.5E-12 5E-17 130.7 11.9 153 523-729 13-167 (220)
116 2xot_A Amphoterin-induced prot 99.4 2.9E-13 1E-17 147.0 7.3 171 524-727 21-201 (361)
117 3e6j_A Variable lymphocyte rec 99.4 2.7E-12 9.4E-17 129.7 12.9 117 484-604 31-148 (229)
118 1xeu_A Internalin C; cellular 99.4 1.1E-12 3.7E-17 135.6 10.1 152 516-706 36-187 (263)
119 4b8c_D Glucose-repressible alc 99.4 2.2E-13 7.5E-18 161.2 4.6 149 471-623 173-324 (727)
120 2v9t_B SLIT homolog 2 protein 99.4 3.3E-12 1.1E-16 128.1 12.3 114 487-604 26-141 (220)
121 1dce_A Protein (RAB geranylger 99.3 9E-15 3.1E-19 167.8 -7.8 120 639-770 443-566 (567)
122 2v70_A SLIT-2, SLIT homolog 2 99.3 4E-12 1.4E-16 127.5 12.2 138 486-648 25-164 (220)
123 3e6j_A Variable lymphocyte rec 99.3 2.5E-12 8.5E-17 130.0 10.2 152 523-729 21-173 (229)
124 2je0_A Acidic leucine-rich nuc 99.3 5.5E-12 1.9E-16 118.1 9.1 131 518-671 14-148 (149)
125 1w5s_A Origin recognition comp 99.3 2.8E-11 9.4E-16 134.1 16.3 266 155-428 21-372 (412)
126 2ell_A Acidic leucine-rich nuc 99.3 4.9E-12 1.7E-16 121.1 8.8 83 520-604 23-108 (168)
127 2ell_A Acidic leucine-rich nuc 99.2 1.9E-11 6.6E-16 116.9 9.7 108 492-604 23-133 (168)
128 2je0_A Acidic leucine-rich nuc 99.2 9.2E-12 3.1E-16 116.5 7.3 108 492-604 16-126 (149)
129 2xot_A Amphoterin-induced prot 99.2 1.7E-11 5.7E-16 133.1 10.2 167 475-648 22-200 (361)
130 2qen_A Walker-type ATPase; unk 99.2 6.3E-11 2.2E-15 127.9 13.1 268 153-448 9-348 (350)
131 1a9n_A U2A', U2A'; complex (nu 99.2 2.2E-11 7.6E-16 117.5 7.9 132 492-648 18-151 (176)
132 1a9n_A U2A', U2A'; complex (nu 99.2 2.1E-11 7.3E-16 117.6 7.0 131 516-673 14-150 (176)
133 1ds9_A Outer arm dynein; leuci 99.2 3.8E-12 1.3E-16 125.5 0.5 131 513-669 40-180 (198)
134 3sb4_A Hypothetical leucine ri 99.2 9.5E-11 3.3E-15 125.4 11.3 283 492-795 24-328 (329)
135 4b8c_D Glucose-repressible alc 99.1 4.2E-12 1.4E-16 150.3 0.0 160 492-661 172-338 (727)
136 1w8a_A SLIT protein; signaling 99.1 1E-10 3.5E-15 114.5 8.6 101 522-623 30-134 (192)
137 2wfh_A SLIT homolog 2 protein 99.1 3.4E-10 1.2E-14 110.8 12.2 121 524-648 13-137 (193)
138 1w8a_A SLIT protein; signaling 99.1 2.2E-10 7.4E-15 112.2 10.5 122 524-648 11-137 (192)
139 2o6r_A Variable lymphocyte rec 99.1 2.6E-10 8.9E-15 110.0 10.6 101 521-623 28-132 (177)
140 2wfh_A SLIT homolog 2 protein 99.1 2.7E-10 9.1E-15 111.5 10.2 102 521-624 31-135 (193)
141 2o6r_A Variable lymphocyte rec 99.0 1.8E-09 6.1E-14 104.1 12.2 124 522-648 8-135 (177)
142 1fnn_A CDC6P, cell division co 99.0 3.3E-08 1.1E-12 108.2 22.8 266 156-429 17-353 (389)
143 2r9u_A Variable lymphocyte rec 99.0 1.6E-09 5.6E-14 103.9 9.6 83 521-603 33-117 (174)
144 2fna_A Conserved hypothetical 98.9 3.1E-09 1.1E-13 114.9 12.0 265 154-447 11-355 (357)
145 2r9u_A Variable lymphocyte rec 98.9 2.9E-09 9.8E-14 102.2 10.0 97 523-623 14-113 (174)
146 3g39_A Variable lymphocyte rec 98.9 3E-09 1E-13 101.7 9.9 80 523-604 11-91 (170)
147 3g39_A Variable lymphocyte rec 98.9 2.6E-09 8.8E-14 102.1 9.3 84 521-604 30-115 (170)
148 4fdw_A Leucine rich hypothetic 98.9 2.5E-08 8.6E-13 109.1 18.1 268 492-808 112-387 (401)
149 2v1u_A Cell division control p 98.9 2.9E-08 9.9E-13 108.5 18.6 265 155-428 18-352 (387)
150 3sb4_A Hypothetical leucine ri 98.9 5.3E-09 1.8E-13 111.8 11.7 262 492-771 48-328 (329)
151 1ds9_A Outer arm dynein; leuci 98.9 8.9E-11 3.1E-15 115.6 -2.6 112 533-673 37-150 (198)
152 4fdw_A Leucine rich hypothetic 98.8 1E-07 3.4E-12 104.3 18.1 240 517-799 109-356 (401)
153 2qby_B CDC6 homolog 3, cell di 98.8 1.2E-08 4.1E-13 111.6 9.7 140 156-302 20-174 (384)
154 1njg_A DNA polymerase III subu 98.7 7.5E-08 2.6E-12 97.6 11.7 180 155-345 22-231 (250)
155 2qby_A CDC6 homolog 1, cell di 98.6 1.4E-08 4.6E-13 111.1 5.3 142 155-303 19-174 (386)
156 4fs7_A Uncharacterized protein 98.6 6.9E-07 2.4E-11 97.8 16.8 278 492-796 70-374 (394)
157 2chg_A Replication factor C sm 98.6 6.5E-08 2.2E-12 96.6 7.8 124 155-303 16-143 (226)
158 2ifg_A High affinity nerve gro 98.6 6E-08 2E-12 104.4 7.4 88 517-604 27-116 (347)
159 3un9_A NLR family member X1; l 98.6 1.3E-08 4.5E-13 110.2 1.8 83 521-603 72-167 (372)
160 2ifg_A High affinity nerve gro 98.5 1.3E-07 4.3E-12 101.8 9.3 95 525-623 12-111 (347)
161 3un9_A NLR family member X1; l 98.5 1.6E-08 5.6E-13 109.5 0.6 164 543-728 71-252 (372)
162 2ra8_A Uncharacterized protein 98.5 5.4E-08 1.8E-12 104.5 3.3 168 633-807 135-328 (362)
163 1sxj_B Activator 1 37 kDa subu 98.3 5E-07 1.7E-11 95.9 6.3 123 155-302 20-147 (323)
164 4fs7_A Uncharacterized protein 98.2 1.2E-05 4.2E-10 87.7 15.9 262 512-797 62-352 (394)
165 3e4g_A ATP synthase subunit S, 98.2 8.6E-07 3E-11 83.5 3.8 87 692-778 62-153 (176)
166 3te6_A Regulatory protein SIR3 98.1 6.9E-06 2.4E-10 85.6 10.3 111 157-276 21-144 (318)
167 4gt6_A Cell surface protein; l 98.1 0.00012 4.2E-09 79.8 19.2 283 494-799 65-368 (394)
168 2ra8_A Uncharacterized protein 98.1 4.4E-06 1.5E-10 89.6 7.4 84 635-726 250-341 (362)
169 1jbk_A CLPB protein; beta barr 98.1 6E-06 2.1E-10 79.9 7.7 45 155-201 21-65 (195)
170 1io0_A Tropomodulin; LRR prote 98.0 3.2E-06 1.1E-10 81.6 4.9 118 512-648 27-162 (185)
171 1iqp_A RFCS; clamp loader, ext 98.0 4.5E-06 1.5E-10 88.7 5.3 119 156-302 25-150 (327)
172 1io0_A Tropomodulin; LRR prote 97.9 2.9E-06 9.9E-11 81.9 2.9 112 492-604 35-164 (185)
173 1hqc_A RUVB; extended AAA-ATPa 97.9 2.7E-06 9.3E-11 90.3 1.8 47 155-201 11-60 (324)
174 2p65_A Hypothetical protein PF 97.8 9.8E-06 3.4E-10 78.0 4.0 45 155-201 21-65 (187)
175 3e4g_A ATP synthase subunit S, 97.8 1E-05 3.5E-10 76.2 3.8 84 715-799 61-150 (176)
176 3h4m_A Proteasome-activating n 97.8 1.8E-05 6.3E-10 82.1 5.7 49 153-201 14-73 (285)
177 4gt6_A Cell surface protein; l 97.7 0.00038 1.3E-08 75.8 14.9 303 472-797 65-387 (394)
178 3rw6_A Nuclear RNA export fact 97.7 3.4E-05 1.2E-09 78.3 5.4 81 515-597 164-257 (267)
179 3n70_A Transport activator; si 97.6 8E-05 2.7E-09 68.5 6.8 46 157-202 2-47 (145)
180 3ec2_A DNA replication protein 97.6 3.1E-05 1.1E-09 74.2 4.2 116 161-301 19-142 (180)
181 1jr3_A DNA polymerase III subu 97.6 0.00019 6.6E-09 77.5 10.3 45 156-201 16-60 (373)
182 2qz4_A Paraplegin; AAA+, SPG7, 97.5 0.00013 4.4E-09 74.5 7.4 48 154-201 4-61 (262)
183 2chq_A Replication factor C sm 97.5 4E-05 1.4E-09 80.9 3.4 120 156-303 17-143 (319)
184 3u61_B DNA polymerase accessor 97.5 0.00018 6.2E-09 76.1 8.4 120 155-303 25-147 (324)
185 3syl_A Protein CBBX; photosynt 97.5 0.00014 4.8E-09 76.3 7.1 45 157-201 32-89 (309)
186 3co5_A Putative two-component 97.4 0.00011 3.6E-09 67.4 4.7 47 156-202 4-50 (143)
187 3eie_A Vacuolar protein sortin 97.4 0.00018 6.2E-09 75.9 6.6 48 154-201 16-73 (322)
188 1d2n_A N-ethylmaleimide-sensit 97.3 0.00054 1.8E-08 70.4 9.6 47 155-201 32-86 (272)
189 1xwi_A SKD1 protein; VPS4B, AA 97.3 0.00088 3E-08 70.5 11.3 49 153-201 9-67 (322)
190 2w58_A DNAI, primosome compone 97.3 0.00033 1.1E-08 68.4 7.3 51 164-216 37-89 (202)
191 4h09_A Hypothetical leucine ri 97.2 0.0035 1.2E-07 67.6 15.2 77 492-577 45-122 (379)
192 3bos_A Putative DNA replicatio 97.2 8.3E-05 2.9E-09 74.7 2.1 57 156-216 28-87 (242)
193 2z4s_A Chromosomal replication 97.2 0.00048 1.6E-08 75.9 8.1 121 157-301 106-236 (440)
194 3rw6_A Nuclear RNA export fact 97.2 0.00024 8.3E-09 72.0 5.2 62 541-604 167-233 (267)
195 3cf0_A Transitional endoplasmi 97.2 0.0012 4.2E-08 68.8 10.7 48 154-201 13-71 (301)
196 3d8b_A Fidgetin-like protein 1 97.2 0.00031 1.1E-08 75.3 5.9 48 154-201 82-139 (357)
197 3uk6_A RUVB-like 2; hexameric 97.2 0.0027 9.3E-08 68.2 13.2 47 155-201 43-92 (368)
198 1sxj_E Activator 1 40 kDa subu 97.0 0.0011 3.9E-08 70.8 8.7 44 156-201 14-58 (354)
199 3pvs_A Replication-associated 97.0 0.00037 1.3E-08 76.7 4.7 45 155-201 25-72 (447)
200 2qp9_X Vacuolar protein sortin 97.0 0.00066 2.3E-08 72.6 6.6 48 154-201 49-106 (355)
201 1sxj_D Activator 1 41 kDa subu 97.0 0.00055 1.9E-08 73.2 6.0 45 155-201 36-80 (353)
202 2bjv_A PSP operon transcriptio 97.0 0.00089 3E-08 68.4 7.3 47 156-202 6-52 (265)
203 3vfd_A Spastin; ATPase, microt 97.0 0.00093 3.2E-08 72.5 7.7 48 154-201 113-170 (389)
204 1l8q_A Chromosomal replication 97.0 0.0015 5.3E-08 68.8 8.8 113 165-301 23-140 (324)
205 1sxj_A Activator 1 95 kDa subu 96.9 0.0017 5.8E-08 73.2 9.1 47 155-201 38-99 (516)
206 3b9p_A CG5977-PA, isoform A; A 96.9 0.0014 4.7E-08 68.2 7.7 48 154-201 19-76 (297)
207 2zan_A Vacuolar protein sortin 96.9 0.0012 4.1E-08 72.8 7.5 49 153-201 131-189 (444)
208 2kjq_A DNAA-related protein; s 96.8 0.00071 2.4E-08 62.3 3.9 36 179-216 36-71 (149)
209 1sxj_C Activator 1 40 kDa subu 96.8 0.0016 5.5E-08 69.2 6.8 44 156-201 25-68 (340)
210 4fcw_A Chaperone protein CLPB; 96.7 0.00094 3.2E-08 70.0 4.8 46 156-201 17-69 (311)
211 2r62_A Cell division protease 96.7 0.00032 1.1E-08 71.9 0.7 48 154-201 9-66 (268)
212 3pxg_A Negative regulator of g 96.7 0.0019 6.4E-08 71.8 6.6 44 156-201 180-223 (468)
213 1qvr_A CLPB protein; coiled co 96.6 0.0019 6.4E-08 77.7 6.9 45 155-201 169-213 (854)
214 1ojl_A Transcriptional regulat 96.6 0.0031 1.1E-07 65.6 7.8 46 156-201 2-47 (304)
215 2cvh_A DNA repair and recombin 96.6 0.0048 1.7E-07 60.7 8.9 90 178-275 19-116 (220)
216 2ce7_A Cell division protein F 96.6 0.0026 8.8E-08 70.2 7.3 48 154-201 14-71 (476)
217 1lv7_A FTSH; alpha/beta domain 96.5 0.0025 8.5E-08 64.7 6.1 48 154-201 10-67 (257)
218 1r6b_X CLPA protein; AAA+, N-t 96.5 0.0057 1.9E-07 72.6 10.0 44 156-201 186-229 (758)
219 4h09_A Hypothetical leucine ri 96.4 0.031 1E-06 60.1 14.4 277 471-771 46-340 (379)
220 3hu3_A Transitional endoplasmi 96.3 0.0026 9E-08 70.7 5.2 47 155-201 203-260 (489)
221 1a5t_A Delta prime, HOLB; zinc 96.3 0.018 6E-07 60.9 11.5 39 162-201 8-46 (334)
222 2gno_A DNA polymerase III, gam 96.3 0.015 5E-07 60.4 10.5 118 160-302 1-122 (305)
223 3hr8_A Protein RECA; alpha and 96.3 0.018 6.1E-07 60.9 11.2 101 166-275 47-150 (356)
224 4b4t_L 26S protease subunit RP 96.2 0.0059 2E-07 66.3 6.6 53 155-209 180-243 (437)
225 4b4t_K 26S protease regulatory 96.1 0.0059 2E-07 66.1 6.3 55 153-209 169-234 (428)
226 4b4t_J 26S protease regulatory 96.1 0.0042 1.4E-07 66.3 4.9 55 153-209 145-210 (405)
227 2vhj_A Ntpase P4, P4; non- hyd 96.1 0.0029 1E-07 65.2 3.5 70 179-276 123-194 (331)
228 3pxi_A Negative regulator of g 96.1 0.0061 2.1E-07 72.3 6.8 44 156-201 180-223 (758)
229 4b4t_H 26S protease regulatory 96.1 0.0048 1.7E-07 66.8 5.3 55 153-209 206-271 (467)
230 3rfe_A Platelet glycoprotein I 96.0 0.0098 3.3E-07 53.1 6.1 55 524-580 11-67 (130)
231 1u94_A RECA protein, recombina 95.9 0.02 6.9E-07 60.6 9.2 105 161-274 44-151 (356)
232 2zr9_A Protein RECA, recombina 95.9 0.032 1.1E-06 59.0 10.7 104 163-275 44-150 (349)
233 2qgz_A Helicase loader, putati 95.8 0.0097 3.3E-07 62.0 6.2 52 163-216 135-188 (308)
234 3pfi_A Holliday junction ATP-d 95.8 0.0038 1.3E-07 66.2 3.1 47 155-201 28-77 (338)
235 2w0m_A SSO2452; RECA, SSPF, un 95.7 0.027 9.3E-07 55.7 9.0 117 179-302 23-168 (235)
236 3cf2_A TER ATPase, transitiona 95.7 0.0095 3.2E-07 69.6 6.3 97 153-275 201-308 (806)
237 1n0w_A DNA repair protein RAD5 95.7 0.022 7.6E-07 56.8 8.3 94 179-275 24-130 (243)
238 1xp8_A RECA protein, recombina 95.7 0.049 1.7E-06 57.9 11.2 105 161-274 55-162 (366)
239 3t15_A Ribulose bisphosphate c 95.7 0.005 1.7E-07 63.7 3.3 29 178-208 35-63 (293)
240 3pxi_A Negative regulator of g 95.7 0.0048 1.6E-07 73.2 3.5 46 156-201 491-543 (758)
241 2c9o_A RUVB-like 1; hexameric 95.7 0.015 5.2E-07 64.3 7.3 47 155-201 36-85 (456)
242 4b4t_I 26S protease regulatory 95.6 0.011 3.6E-07 63.5 5.6 55 153-209 179-244 (437)
243 4b4t_M 26S protease regulatory 95.6 0.0078 2.7E-07 65.2 4.6 55 153-209 178-243 (434)
244 1ypw_A Transitional endoplasmi 95.6 0.015 5E-07 69.0 7.4 49 153-201 201-260 (806)
245 1v5w_A DMC1, meiotic recombina 95.6 0.029 9.9E-07 59.4 9.0 105 168-275 111-230 (343)
246 2x8a_A Nuclear valosin-contain 95.6 0.019 6.3E-07 58.7 7.2 47 154-201 8-66 (274)
247 2z43_A DNA repair and recombin 95.6 0.019 6.4E-07 60.3 7.3 105 168-275 96-214 (324)
248 3io5_A Recombination and repai 95.4 0.063 2.1E-06 55.1 10.3 87 181-276 30-123 (333)
249 2i1q_A DNA repair and recombin 95.4 0.023 7.8E-07 59.7 7.1 105 167-274 86-214 (322)
250 1rz3_A Hypothetical protein rb 95.3 0.017 5.7E-07 56.0 5.2 41 161-201 3-44 (201)
251 3c8u_A Fructokinase; YP_612366 95.2 0.011 3.7E-07 57.7 3.6 37 165-201 8-44 (208)
252 1in4_A RUVB, holliday junction 95.2 0.0088 3E-07 63.2 3.1 46 156-201 25-73 (334)
253 2dhr_A FTSH; AAA+ protein, hex 95.1 0.027 9.3E-07 62.4 6.8 50 152-201 27-86 (499)
254 3m6a_A ATP-dependent protease 95.0 0.027 9.4E-07 63.6 6.8 46 156-201 81-130 (543)
255 1pgv_A TMD-1, tropomodulin TMD 95.0 0.024 8.2E-07 54.2 5.3 88 512-600 32-135 (197)
256 1g5t_A COB(I)alamin adenosyltr 95.0 0.02 6.9E-07 54.5 4.7 119 180-302 29-163 (196)
257 1qvr_A CLPB protein; coiled co 94.9 0.024 8.1E-07 68.1 6.1 45 157-201 559-610 (854)
258 3e70_C DPA, signal recognition 94.8 0.079 2.7E-06 55.4 9.2 24 178-201 128-151 (328)
259 1odf_A YGR205W, hypothetical 3 94.8 0.026 8.8E-07 58.1 5.4 27 175-201 27-53 (290)
260 3lw7_A Adenylate kinase relate 94.8 0.013 4.5E-07 55.0 3.0 108 180-306 2-116 (179)
261 1ofh_A ATP-dependent HSL prote 94.8 0.012 3.9E-07 61.4 2.8 46 156-201 15-72 (310)
262 3rfe_A Platelet glycoprotein I 94.8 0.028 9.6E-07 50.0 4.9 55 547-604 11-68 (130)
263 1zp6_A Hypothetical protein AT 94.6 0.017 5.9E-07 55.2 3.3 23 179-201 9-31 (191)
264 2pjz_A Hypothetical protein ST 94.5 0.2 6.8E-06 50.5 11.2 22 180-201 31-52 (263)
265 3fwy_A Light-independent proto 94.5 0.018 6.1E-07 59.9 3.4 37 178-216 47-83 (314)
266 1qhx_A CPT, protein (chloramph 94.4 0.015 5.2E-07 54.9 2.4 22 180-201 4-25 (178)
267 1pgv_A TMD-1, tropomodulin TMD 94.3 0.018 6.2E-07 55.0 2.7 110 492-602 40-168 (197)
268 1fx0_B ATP synthase beta chain 94.3 0.065 2.2E-06 58.4 7.2 104 168-276 155-278 (498)
269 3kb2_A SPBC2 prophage-derived 94.3 0.02 6.7E-07 53.7 2.8 22 180-201 2-23 (173)
270 3hws_A ATP-dependent CLP prote 94.2 0.024 8.3E-07 60.6 3.8 45 157-201 16-73 (363)
271 1ixz_A ATP-dependent metallopr 94.2 0.027 9.3E-07 56.7 3.9 46 155-201 15-71 (254)
272 1kgd_A CASK, peripheral plasma 94.2 0.021 7.2E-07 54.2 2.9 23 179-201 5-27 (180)
273 3lda_A DNA repair protein RAD5 94.2 0.11 3.7E-06 55.9 8.7 107 166-275 165-284 (400)
274 1pzn_A RAD51, DNA repair and r 94.2 0.061 2.1E-06 56.9 6.7 104 170-276 122-243 (349)
275 2ck3_D ATP synthase subunit be 94.1 0.049 1.7E-06 59.1 5.7 105 167-275 142-264 (482)
276 1ly1_A Polynucleotide kinase; 94.0 0.027 9.1E-07 53.2 3.2 22 180-201 3-24 (181)
277 3vaa_A Shikimate kinase, SK; s 94.0 0.023 7.9E-07 54.9 2.8 23 179-201 25-47 (199)
278 1j8m_F SRP54, signal recogniti 94.0 0.092 3.1E-06 54.1 7.4 36 179-216 98-133 (297)
279 3ice_A Transcription terminati 94.0 0.073 2.5E-06 56.0 6.5 101 167-276 163-273 (422)
280 2r44_A Uncharacterized protein 93.9 0.034 1.2E-06 58.6 4.1 42 156-201 27-68 (331)
281 2px0_A Flagellar biosynthesis 93.9 0.095 3.3E-06 54.0 7.4 86 178-273 104-191 (296)
282 1kag_A SKI, shikimate kinase I 93.9 0.021 7.3E-07 53.5 2.3 22 180-201 5-26 (173)
283 4gp7_A Metallophosphoesterase; 93.9 0.03 1E-06 52.5 3.3 23 179-201 9-31 (171)
284 2ga8_A Hypothetical 39.9 kDa p 93.8 0.052 1.8E-06 56.8 5.2 43 159-201 2-46 (359)
285 1knq_A Gluconate kinase; ALFA/ 93.8 0.033 1.1E-06 52.4 3.3 23 179-201 8-30 (175)
286 2bdt_A BH3686; alpha-beta prot 93.7 0.033 1.1E-06 53.2 3.3 22 180-201 3-24 (189)
287 2b8t_A Thymidine kinase; deoxy 93.7 0.02 6.8E-07 56.2 1.7 112 179-302 12-126 (223)
288 3trf_A Shikimate kinase, SK; a 93.7 0.024 8.3E-07 53.9 2.2 23 179-201 5-27 (185)
289 1iy2_A ATP-dependent metallopr 93.6 0.04 1.4E-06 56.3 3.9 48 153-201 37-95 (278)
290 3nbx_X ATPase RAVA; AAA+ ATPas 93.6 0.051 1.8E-06 60.2 5.0 42 156-201 22-63 (500)
291 3uie_A Adenylyl-sulfate kinase 93.6 0.036 1.2E-06 53.6 3.3 23 179-201 25-47 (200)
292 1ye8_A Protein THEP1, hypothet 93.6 0.032 1.1E-06 52.7 2.9 22 181-202 2-23 (178)
293 3jvv_A Twitching mobility prot 93.6 0.09 3.1E-06 55.6 6.6 111 179-306 123-235 (356)
294 3tr0_A Guanylate kinase, GMP k 93.6 0.033 1.1E-06 53.9 3.0 22 180-201 8-29 (205)
295 3kl4_A SRP54, signal recogniti 93.6 0.11 3.7E-06 56.3 7.3 24 178-201 96-119 (433)
296 2qt1_A Nicotinamide riboside k 93.6 0.04 1.4E-06 53.5 3.6 24 178-201 20-43 (207)
297 3a00_A Guanylate kinase, GMP k 93.6 0.027 9.3E-07 53.7 2.3 22 180-201 2-23 (186)
298 4eun_A Thermoresistant glucoki 93.5 0.032 1.1E-06 53.9 2.8 23 179-201 29-51 (200)
299 1nks_A Adenylate kinase; therm 93.5 0.031 1.1E-06 53.4 2.7 22 180-201 2-23 (194)
300 1vma_A Cell division protein F 93.4 0.077 2.6E-06 54.8 5.6 92 178-275 103-197 (306)
301 3asz_A Uridine kinase; cytidin 93.4 0.041 1.4E-06 53.6 3.3 24 178-201 5-28 (211)
302 3t61_A Gluconokinase; PSI-biol 93.4 0.029 9.8E-07 54.3 2.1 23 179-201 18-40 (202)
303 1jjv_A Dephospho-COA kinase; P 93.3 0.043 1.5E-06 53.2 3.4 22 180-201 3-24 (206)
304 2plr_A DTMP kinase, probable t 93.3 0.079 2.7E-06 51.4 5.3 23 179-201 4-26 (213)
305 1zuh_A Shikimate kinase; alpha 93.2 0.039 1.3E-06 51.5 2.8 24 178-201 6-29 (168)
306 2rhm_A Putative kinase; P-loop 93.2 0.046 1.6E-06 52.2 3.4 23 179-201 5-27 (193)
307 1sky_E F1-ATPase, F1-ATP synth 93.2 0.083 2.9E-06 57.4 5.7 49 181-233 153-203 (473)
308 2j41_A Guanylate kinase; GMP, 93.2 0.039 1.3E-06 53.4 2.9 23 179-201 6-28 (207)
309 2if2_A Dephospho-COA kinase; a 93.2 0.039 1.3E-06 53.4 2.9 22 180-201 2-23 (204)
310 3tau_A Guanylate kinase, GMP k 93.2 0.039 1.3E-06 53.7 2.8 23 179-201 8-30 (208)
311 1kht_A Adenylate kinase; phosp 93.2 0.039 1.3E-06 52.7 2.8 22 180-201 4-25 (192)
312 1um8_A ATP-dependent CLP prote 93.2 0.053 1.8E-06 58.2 4.2 46 156-201 21-94 (376)
313 2hf9_A Probable hydrogenase ni 93.2 0.076 2.6E-06 52.2 5.0 37 164-202 25-61 (226)
314 1uf9_A TT1252 protein; P-loop, 93.1 0.048 1.6E-06 52.6 3.4 25 177-201 6-30 (203)
315 2orw_A Thymidine kinase; TMTK, 93.1 0.047 1.6E-06 51.9 3.2 109 180-302 4-113 (184)
316 2jaq_A Deoxyguanosine kinase; 93.1 0.038 1.3E-06 53.4 2.6 21 181-201 2-22 (205)
317 4a74_A DNA repair and recombin 93.1 0.12 4E-06 50.9 6.2 47 178-226 24-74 (231)
318 1lvg_A Guanylate kinase, GMP k 93.1 0.036 1.2E-06 53.5 2.3 23 179-201 4-26 (198)
319 2qor_A Guanylate kinase; phosp 93.0 0.035 1.2E-06 53.8 2.2 23 179-201 12-34 (204)
320 3tqc_A Pantothenate kinase; bi 93.0 0.074 2.5E-06 55.3 4.8 25 177-201 90-114 (321)
321 3tlx_A Adenylate kinase 2; str 93.0 0.069 2.3E-06 53.4 4.3 38 164-201 14-51 (243)
322 1ex7_A Guanylate kinase; subst 93.0 0.032 1.1E-06 53.0 1.8 30 180-211 2-31 (186)
323 1uj2_A Uridine-cytidine kinase 93.0 0.051 1.8E-06 54.6 3.4 24 178-201 21-44 (252)
324 3iij_A Coilin-interacting nucl 93.0 0.038 1.3E-06 52.3 2.3 23 179-201 11-33 (180)
325 2ze6_A Isopentenyl transferase 93.0 0.05 1.7E-06 54.7 3.3 22 180-201 2-23 (253)
326 1htw_A HI0065; nucleotide-bind 93.0 0.055 1.9E-06 49.9 3.3 24 178-201 32-55 (158)
327 2yvu_A Probable adenylyl-sulfa 93.0 0.052 1.8E-06 51.6 3.3 24 178-201 12-35 (186)
328 1ukz_A Uridylate kinase; trans 92.9 0.057 2E-06 52.1 3.6 24 178-201 14-37 (203)
329 1gvn_B Zeta; postsegregational 92.9 0.078 2.7E-06 54.4 4.8 38 164-201 15-55 (287)
330 1y63_A LMAJ004144AAA protein; 92.9 0.051 1.7E-06 51.7 3.1 23 179-201 10-32 (184)
331 1xjc_A MOBB protein homolog; s 92.9 0.049 1.7E-06 50.7 2.9 24 178-201 3-26 (169)
332 2wsm_A Hydrogenase expression/ 92.9 0.069 2.4E-06 52.3 4.2 40 160-201 13-52 (221)
333 3p32_A Probable GTPase RV1496/ 92.9 0.083 2.8E-06 56.1 5.1 37 165-201 65-101 (355)
334 1zu4_A FTSY; GTPase, signal re 92.9 0.098 3.3E-06 54.5 5.5 37 178-216 104-140 (320)
335 1cke_A CK, MSSA, protein (cyti 92.9 0.048 1.7E-06 53.7 3.0 22 180-201 6-27 (227)
336 1znw_A Guanylate kinase, GMP k 92.8 0.048 1.6E-06 53.0 2.9 23 179-201 20-42 (207)
337 3aez_A Pantothenate kinase; tr 92.8 0.056 1.9E-06 56.1 3.6 25 177-201 88-112 (312)
338 2bbw_A Adenylate kinase 4, AK4 92.8 0.05 1.7E-06 54.5 3.1 23 179-201 27-49 (246)
339 3cm0_A Adenylate kinase; ATP-b 92.8 0.055 1.9E-06 51.3 3.2 23 179-201 4-26 (186)
340 1tev_A UMP-CMP kinase; ploop, 92.8 0.056 1.9E-06 51.7 3.2 23 179-201 3-25 (196)
341 1via_A Shikimate kinase; struc 92.8 0.041 1.4E-06 51.8 2.2 22 180-201 5-26 (175)
342 2p5t_B PEZT; postsegregational 92.7 0.078 2.7E-06 53.3 4.3 40 162-201 12-54 (253)
343 2r9v_A ATP synthase subunit al 92.6 0.13 4.5E-06 56.0 6.2 101 168-276 165-279 (515)
344 2grj_A Dephospho-COA kinase; T 92.6 0.063 2.1E-06 51.4 3.3 24 178-201 11-34 (192)
345 3a4m_A L-seryl-tRNA(SEC) kinas 92.6 0.062 2.1E-06 54.3 3.4 23 179-201 4-26 (260)
346 2iyv_A Shikimate kinase, SK; t 92.6 0.042 1.4E-06 52.1 2.0 22 180-201 3-24 (184)
347 2c95_A Adenylate kinase 1; tra 92.6 0.056 1.9E-06 51.7 2.9 23 179-201 9-31 (196)
348 3ney_A 55 kDa erythrocyte memb 92.5 0.058 2E-06 51.7 2.9 24 178-201 18-41 (197)
349 3tif_A Uncharacterized ABC tra 92.5 0.1 3.4E-06 51.8 4.8 23 179-201 31-53 (235)
350 1z6g_A Guanylate kinase; struc 92.5 0.048 1.6E-06 53.5 2.3 23 179-201 23-45 (218)
351 2jeo_A Uridine-cytidine kinase 92.5 0.07 2.4E-06 53.4 3.6 23 179-201 25-47 (245)
352 2onk_A Molybdate/tungstate ABC 92.5 0.1 3.5E-06 51.9 4.7 22 180-201 25-46 (240)
353 3l0o_A Transcription terminati 92.4 0.32 1.1E-05 51.2 8.5 35 166-201 163-197 (427)
354 1e6c_A Shikimate kinase; phosp 92.4 0.049 1.7E-06 51.0 2.2 22 180-201 3-24 (173)
355 1qf9_A UMP/CMP kinase, protein 92.4 0.065 2.2E-06 51.1 3.1 23 179-201 6-28 (194)
356 2bwj_A Adenylate kinase 5; pho 92.4 0.056 1.9E-06 51.9 2.7 23 179-201 12-34 (199)
357 2ffh_A Protein (FFH); SRP54, s 92.4 0.18 6.3E-06 54.4 6.9 36 179-216 98-133 (425)
358 2pcj_A ABC transporter, lipopr 92.3 0.1 3.5E-06 51.3 4.6 23 179-201 30-52 (224)
359 2pt5_A Shikimate kinase, SK; a 92.3 0.065 2.2E-06 49.8 3.0 21 181-201 2-22 (168)
360 3gfo_A Cobalt import ATP-bindi 92.3 0.11 3.6E-06 52.9 4.7 23 179-201 34-56 (275)
361 2ewv_A Twitching motility prot 92.3 0.12 4.1E-06 55.2 5.3 110 179-306 136-248 (372)
362 3dm5_A SRP54, signal recogniti 92.3 0.35 1.2E-05 52.3 8.9 24 178-201 99-122 (443)
363 2pbr_A DTMP kinase, thymidylat 92.2 0.063 2.1E-06 51.3 2.8 21 181-201 2-22 (195)
364 4e22_A Cytidylate kinase; P-lo 92.2 0.067 2.3E-06 53.8 3.1 23 179-201 27-49 (252)
365 1s96_A Guanylate kinase, GMP k 92.2 0.064 2.2E-06 52.5 2.8 23 179-201 16-38 (219)
366 2z0h_A DTMP kinase, thymidylat 92.2 0.12 4.2E-06 49.3 4.8 21 181-201 2-22 (197)
367 1rj9_A FTSY, signal recognitio 92.2 0.072 2.5E-06 55.0 3.3 24 178-201 101-124 (304)
368 2cdn_A Adenylate kinase; phosp 92.2 0.069 2.4E-06 51.5 3.0 23 179-201 20-42 (201)
369 2vli_A Antibiotic resistance p 92.1 0.051 1.7E-06 51.4 2.0 23 179-201 5-27 (183)
370 1b0u_A Histidine permease; ABC 92.1 0.12 4E-06 52.3 4.7 23 179-201 32-54 (262)
371 1fx0_A ATP synthase alpha chai 92.1 0.14 4.9E-06 55.8 5.7 95 180-282 164-274 (507)
372 2f6r_A COA synthase, bifunctio 92.1 0.075 2.6E-06 54.4 3.4 24 178-201 74-97 (281)
373 3vr4_D V-type sodium ATPase su 92.1 0.1 3.5E-06 56.3 4.4 91 181-275 153-259 (465)
374 2i3b_A HCR-ntpase, human cance 92.1 0.062 2.1E-06 51.3 2.5 21 181-201 3-23 (189)
375 2f1r_A Molybdopterin-guanine d 92.0 0.053 1.8E-06 50.8 1.9 22 180-201 3-24 (171)
376 1g8p_A Magnesium-chelatase 38 92.0 0.055 1.9E-06 57.3 2.2 45 155-201 23-67 (350)
377 4a1f_A DNAB helicase, replicat 92.0 0.32 1.1E-05 50.8 7.9 64 167-237 35-98 (338)
378 1nn5_A Similar to deoxythymidy 91.9 0.077 2.6E-06 51.6 3.1 23 179-201 9-31 (215)
379 3bh0_A DNAB-like replicative h 91.9 0.24 8.2E-06 51.5 7.0 65 166-237 56-120 (315)
380 2og2_A Putative signal recogni 91.9 0.12 4.2E-06 54.5 4.7 24 178-201 156-179 (359)
381 2qe7_A ATP synthase subunit al 91.8 0.25 8.4E-06 53.9 7.1 90 180-275 163-265 (502)
382 1g41_A Heat shock protein HSLU 91.8 0.084 2.9E-06 57.3 3.5 52 156-209 15-78 (444)
383 1ji0_A ABC transporter; ATP bi 91.8 0.14 4.6E-06 51.0 4.8 23 179-201 32-54 (240)
384 1sgw_A Putative ABC transporte 91.8 0.12 4E-06 50.4 4.2 23 180-202 36-58 (214)
385 3b85_A Phosphate starvation-in 91.8 0.12 4.1E-06 50.1 4.2 22 180-201 23-44 (208)
386 2olj_A Amino acid ABC transpor 91.8 0.14 4.6E-06 51.8 4.7 23 179-201 50-72 (263)
387 2pez_A Bifunctional 3'-phospho 91.8 0.089 3.1E-06 49.6 3.2 23 179-201 5-27 (179)
388 3umf_A Adenylate kinase; rossm 91.7 0.086 2.9E-06 51.4 3.1 25 177-201 27-51 (217)
389 1gtv_A TMK, thymidylate kinase 91.7 0.044 1.5E-06 53.4 1.0 22 180-201 1-22 (214)
390 2ff7_A Alpha-hemolysin translo 91.7 0.14 4.8E-06 51.1 4.8 23 179-201 35-57 (247)
391 1vpl_A ABC transporter, ATP-bi 91.7 0.14 4.8E-06 51.4 4.7 23 179-201 41-63 (256)
392 3b9q_A Chloroplast SRP recepto 91.7 0.095 3.2E-06 54.1 3.5 24 178-201 99-122 (302)
393 1g6h_A High-affinity branched- 91.7 0.14 4.8E-06 51.5 4.8 23 179-201 33-55 (257)
394 1vht_A Dephospho-COA kinase; s 91.7 0.098 3.4E-06 51.1 3.5 23 179-201 4-26 (218)
395 1mv5_A LMRA, multidrug resista 91.7 0.14 4.7E-06 51.1 4.6 23 179-201 28-50 (243)
396 4g1u_C Hemin import ATP-bindin 91.6 0.14 4.7E-06 51.8 4.6 23 179-201 37-59 (266)
397 2yhs_A FTSY, cell division pro 91.6 0.15 5E-06 55.9 5.1 37 165-201 272-315 (503)
398 2pze_A Cystic fibrosis transme 91.6 0.14 4.8E-06 50.5 4.6 24 179-202 34-57 (229)
399 2xxa_A Signal recognition part 91.6 0.14 4.6E-06 55.8 4.8 38 164-201 78-122 (433)
400 2wwf_A Thymidilate kinase, put 91.6 0.079 2.7E-06 51.4 2.7 23 179-201 10-32 (212)
401 2ehv_A Hypothetical protein PH 91.6 0.087 3E-06 52.6 3.1 23 179-201 30-52 (251)
402 2ixe_A Antigen peptide transpo 91.6 0.15 5E-06 51.8 4.8 23 179-201 45-67 (271)
403 3cmu_A Protein RECA, recombina 91.5 0.22 7.6E-06 63.6 7.2 99 167-274 1414-1515(2050)
404 3llm_A ATP-dependent RNA helic 91.5 1.2 4.2E-05 43.7 11.5 105 164-275 65-187 (235)
405 3lnc_A Guanylate kinase, GMP k 91.5 0.062 2.1E-06 53.2 1.8 23 179-201 27-50 (231)
406 2cbz_A Multidrug resistance-as 91.4 0.099 3.4E-06 51.9 3.2 24 179-202 31-54 (237)
407 1m7g_A Adenylylsulfate kinase; 91.4 0.1 3.5E-06 50.7 3.3 23 179-201 25-47 (211)
408 2v54_A DTMP kinase, thymidylat 91.4 0.088 3E-06 50.7 2.8 23 179-201 4-26 (204)
409 2yz2_A Putative ABC transporte 91.4 0.16 5.4E-06 51.4 4.8 23 179-201 33-55 (266)
410 3bgw_A DNAB-like replicative h 91.3 0.48 1.6E-05 51.7 8.9 70 159-235 178-247 (444)
411 1sq5_A Pantothenate kinase; P- 91.3 0.11 3.6E-06 54.0 3.5 24 178-201 79-102 (308)
412 3hjn_A DTMP kinase, thymidylat 91.3 0.22 7.4E-06 47.8 5.4 49 181-233 2-50 (197)
413 3fb4_A Adenylate kinase; psych 91.3 0.099 3.4E-06 51.0 3.0 21 181-201 2-22 (216)
414 1zd8_A GTP:AMP phosphotransfer 91.2 0.095 3.2E-06 51.7 2.9 23 179-201 7-29 (227)
415 3nwj_A ATSK2; P loop, shikimat 91.2 0.08 2.7E-06 53.0 2.2 22 180-201 49-70 (250)
416 1yrb_A ATP(GTP)binding protein 91.1 0.11 3.9E-06 52.3 3.5 24 178-201 13-36 (262)
417 1aky_A Adenylate kinase; ATP:A 91.1 0.11 3.6E-06 51.0 3.1 23 179-201 4-26 (220)
418 3thx_A DNA mismatch repair pro 91.1 0.57 1.9E-05 55.9 9.7 21 179-199 662-682 (934)
419 3dl0_A Adenylate kinase; phosp 91.0 0.11 3.7E-06 50.8 3.0 21 181-201 2-22 (216)
420 1np6_A Molybdopterin-guanine d 91.0 0.11 3.7E-06 48.8 2.9 23 179-201 6-28 (174)
421 2ihy_A ABC transporter, ATP-bi 91.0 0.18 6.1E-06 51.4 4.7 23 179-201 47-69 (279)
422 4eaq_A DTMP kinase, thymidylat 91.0 0.18 6.2E-06 49.7 4.6 24 178-201 25-48 (229)
423 2qi9_C Vitamin B12 import ATP- 90.9 0.15 5.3E-06 50.9 4.1 22 180-201 27-48 (249)
424 2d2e_A SUFC protein; ABC-ATPas 90.9 0.12 4E-06 51.9 3.2 23 179-201 29-51 (250)
425 3d3q_A TRNA delta(2)-isopenten 90.8 0.12 4.1E-06 53.8 3.3 22 180-201 8-29 (340)
426 2wji_A Ferrous iron transport 90.8 0.14 4.8E-06 47.4 3.4 23 180-202 4-26 (165)
427 3ake_A Cytidylate kinase; CMP 90.8 0.12 4E-06 50.0 3.0 21 181-201 4-24 (208)
428 1svm_A Large T antigen; AAA+ f 90.8 0.18 6.1E-06 53.7 4.6 36 166-201 156-191 (377)
429 2zej_A Dardarin, leucine-rich 90.8 0.12 4E-06 49.0 2.9 22 181-202 4-25 (184)
430 2c61_A A-type ATP synthase non 90.8 0.095 3.2E-06 56.8 2.5 93 180-274 153-259 (469)
431 1tue_A Replication protein E1; 90.7 0.15 5.2E-06 48.7 3.6 36 165-201 45-80 (212)
432 2zu0_C Probable ATP-dependent 90.7 0.12 4.3E-06 52.2 3.2 24 179-202 46-69 (267)
433 2e87_A Hypothetical protein PH 90.6 4.3 0.00015 42.7 15.4 25 178-202 166-190 (357)
434 1zak_A Adenylate kinase; ATP:A 90.6 0.1 3.5E-06 51.2 2.4 23 179-201 5-27 (222)
435 3gqb_B V-type ATP synthase bet 90.6 0.077 2.6E-06 57.2 1.6 93 180-275 148-262 (464)
436 2ghi_A Transport protein; mult 90.6 0.13 4.4E-06 51.9 3.2 23 179-201 46-68 (260)
437 1cr0_A DNA primase/helicase; R 90.6 0.27 9.1E-06 50.6 5.7 52 179-236 35-87 (296)
438 1tq4_A IIGP1, interferon-induc 90.5 0.13 4.3E-06 55.5 3.2 35 167-201 57-91 (413)
439 1oix_A RAS-related protein RAB 90.5 0.13 4.4E-06 49.1 2.9 24 179-202 29-52 (191)
440 2nq2_C Hypothetical ABC transp 90.5 0.13 4.6E-06 51.5 3.2 24 179-202 31-54 (253)
441 3oaa_A ATP synthase subunit al 90.5 0.36 1.2E-05 52.5 6.7 99 168-275 152-265 (513)
442 3k1j_A LON protease, ATP-depen 90.5 0.26 9E-06 56.4 6.0 42 156-201 41-82 (604)
443 3end_A Light-independent proto 90.4 0.15 5E-06 53.0 3.5 38 177-216 39-76 (307)
444 2ck3_A ATP synthase subunit al 90.3 0.25 8.7E-06 53.9 5.3 106 168-276 152-274 (510)
445 2vp4_A Deoxynucleoside kinase; 90.2 0.12 4E-06 51.2 2.5 24 178-201 19-42 (230)
446 3r20_A Cytidylate kinase; stru 90.2 0.14 4.8E-06 50.4 3.0 23 179-201 9-31 (233)
447 3nh6_A ATP-binding cassette SU 90.1 0.22 7.4E-06 51.4 4.4 23 179-201 80-102 (306)
448 3mfy_A V-type ATP synthase alp 90.1 0.4 1.4E-05 52.7 6.7 59 167-232 216-275 (588)
449 1ls1_A Signal recognition part 90.1 0.16 5.4E-06 52.3 3.4 36 179-216 98-133 (295)
450 1fzq_A ADP-ribosylation factor 90.0 0.18 6.3E-06 47.4 3.6 26 177-202 14-39 (181)
451 3be4_A Adenylate kinase; malar 90.0 0.12 4.2E-06 50.4 2.4 23 179-201 5-27 (217)
452 2v3c_C SRP54, signal recogniti 90.0 0.14 4.7E-06 55.7 3.0 37 165-201 78-121 (432)
453 1cp2_A CP2, nitrogenase iron p 90.0 0.15 5.1E-06 51.6 3.2 35 180-216 2-36 (269)
454 2f9l_A RAB11B, member RAS onco 90.0 0.14 4.9E-06 49.0 2.8 24 179-202 5-28 (199)
455 2r6a_A DNAB helicase, replicat 89.9 0.44 1.5E-05 52.3 7.1 64 165-234 190-253 (454)
456 2eyu_A Twitching motility prot 89.9 0.16 5.6E-06 51.1 3.3 112 179-306 25-137 (261)
457 2dyk_A GTP-binding protein; GT 89.9 0.16 5.6E-06 46.3 3.1 23 180-202 2-24 (161)
458 2xb4_A Adenylate kinase; ATP-b 89.9 0.15 5.2E-06 50.0 3.0 21 181-201 2-22 (223)
459 2afh_E Nitrogenase iron protei 89.8 0.16 5.6E-06 52.0 3.3 23 179-201 2-24 (289)
460 1e4v_A Adenylate kinase; trans 89.8 0.15 5.2E-06 49.6 2.9 21 181-201 2-22 (214)
461 2wjg_A FEOB, ferrous iron tran 89.8 0.2 6.9E-06 47.2 3.7 24 179-202 7-30 (188)
462 3a8t_A Adenylate isopentenyltr 89.7 0.15 5.3E-06 52.9 2.9 23 179-201 40-62 (339)
463 2j37_W Signal recognition part 89.5 0.26 8.9E-06 54.5 4.7 24 178-201 100-123 (504)
464 2qm8_A GTPase/ATPase; G protei 89.5 0.28 9.5E-06 51.5 4.8 35 167-201 43-77 (337)
465 3crm_A TRNA delta(2)-isopenten 89.4 0.18 6.3E-06 52.1 3.3 22 180-201 6-27 (323)
466 1q3t_A Cytidylate kinase; nucl 89.4 0.18 6.2E-06 49.9 3.1 24 178-201 15-38 (236)
467 2nzj_A GTP-binding protein REM 89.4 0.19 6.5E-06 46.7 3.1 24 179-202 4-27 (175)
468 1ltq_A Polynucleotide kinase; 89.3 0.18 6.3E-06 51.9 3.2 22 180-201 3-24 (301)
469 1f6b_A SAR1; gtpases, N-termin 89.3 0.28 9.6E-06 46.9 4.3 34 168-202 15-48 (198)
470 3sop_A Neuronal-specific septi 89.2 0.18 6.1E-06 51.1 3.0 21 181-201 4-24 (270)
471 1ak2_A Adenylate kinase isoenz 89.2 0.16 5.6E-06 50.2 2.6 23 179-201 16-38 (233)
472 2p67_A LAO/AO transport system 89.2 0.28 9.5E-06 51.7 4.5 34 168-201 45-78 (341)
473 4edh_A DTMP kinase, thymidylat 89.2 0.44 1.5E-05 46.3 5.6 23 179-201 6-28 (213)
474 3cmu_A Protein RECA, recombina 89.1 0.57 2E-05 59.9 7.9 108 158-274 361-471 (2050)
475 2v9p_A Replication protein E1; 89.1 0.29 1E-05 50.3 4.5 24 178-201 125-148 (305)
476 2q6t_A DNAB replication FORK h 89.0 0.67 2.3E-05 50.7 7.6 73 160-238 182-254 (444)
477 2gj8_A MNME, tRNA modification 89.0 0.19 6.6E-06 46.8 2.8 23 180-202 5-27 (172)
478 1nlf_A Regulatory protein REPA 88.9 0.17 5.8E-06 51.6 2.6 23 179-201 30-52 (279)
479 3q72_A GTP-binding protein RAD 88.9 0.2 6.7E-06 46.1 2.9 22 181-202 4-25 (166)
480 3tui_C Methionine import ATP-b 88.9 0.32 1.1E-05 51.2 4.7 23 179-201 54-76 (366)
481 3exa_A TRNA delta(2)-isopenten 88.9 0.22 7.4E-06 51.1 3.3 23 179-201 3-25 (322)
482 2ce2_X GTPase HRAS; signaling 88.9 0.19 6.5E-06 46.0 2.7 22 181-202 5-26 (166)
483 3fvq_A Fe(3+) IONS import ATP- 88.9 0.31 1.1E-05 51.2 4.6 23 179-201 30-52 (359)
484 1z2a_A RAS-related protein RAB 88.9 0.2 6.8E-06 46.1 2.9 24 179-202 5-28 (168)
485 2bbs_A Cystic fibrosis transme 88.9 0.2 6.9E-06 51.2 3.1 24 179-202 64-87 (290)
486 1a7j_A Phosphoribulokinase; tr 88.7 0.11 3.9E-06 53.2 1.1 23 179-201 5-27 (290)
487 3sr0_A Adenylate kinase; phosp 88.7 0.22 7.5E-06 48.1 3.1 21 181-201 2-22 (206)
488 2erx_A GTP-binding protein DI- 88.7 0.21 7.3E-06 46.1 2.9 23 180-202 4-26 (172)
489 2lkc_A Translation initiation 88.7 0.31 1.1E-05 45.3 4.1 25 178-202 7-31 (178)
490 3con_A GTPase NRAS; structural 88.7 0.2 7E-06 47.4 2.9 23 180-202 22-44 (190)
491 3def_A T7I23.11 protein; chlor 88.7 0.43 1.5E-05 48.0 5.4 38 165-202 22-59 (262)
492 2dr3_A UPF0273 protein PH0284; 88.5 0.2 6.8E-06 49.8 2.7 36 179-216 23-58 (247)
493 1u8z_A RAS-related protein RAL 88.5 0.2 6.8E-06 46.0 2.5 24 179-202 4-27 (168)
494 3tw8_B RAS-related protein RAB 88.5 0.23 7.9E-06 46.3 3.0 25 178-202 8-32 (181)
495 3zvl_A Bifunctional polynucleo 88.4 0.21 7.3E-06 54.2 3.1 24 178-201 257-280 (416)
496 1c1y_A RAS-related protein RAP 88.4 0.24 8.1E-06 45.5 3.0 23 180-202 4-26 (167)
497 1r6b_X CLPA protein; AAA+, N-t 88.4 0.38 1.3E-05 56.8 5.5 46 156-201 458-510 (758)
498 3d31_A Sulfate/molybdate ABC t 88.4 0.34 1.2E-05 50.9 4.5 23 179-201 26-48 (348)
499 1h65_A Chloroplast outer envel 88.3 0.47 1.6E-05 48.0 5.5 38 166-203 26-63 (270)
500 1z08_A RAS-related protein RAB 88.2 0.25 8.6E-06 45.5 3.1 24 179-202 6-29 (170)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=5.2e-43 Score=402.80 Aligned_cols=278 Identities=17% Similarity=0.184 Sum_probs=222.6
Q ss_pred eechhhHHHHHHHHHcC-CCCeEEEEEEcCCCChHHHHHHHHhC--CccccCCCceeEEEECCCCCCC--CHHHHHHHHH
Q 003387 159 VGLDDRMEELLDLLIEG-PPQLSVVAILDSIGLDKTAFAGEAYN--SSYVKHYFDCHAWITEPYSNEY--DADQILDIVI 233 (824)
Q Consensus 159 vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGvGKTtLa~~v~~--~~~~~~~F~~~~wv~~~vs~~~--~~~~~~~~i~ 233 (824)
|||+.++++|.++|..+ +.+.+||+|+|||||||||||+++|+ |.+++.+|+.++||+ +++.+ +..+++++|+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~--vs~~~~~~~~~~~~~il 208 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK--DSGTAPKSTFDLFTDIL 208 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE--CCCCSTTHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE--ECCCCCCCHHHHHHHHH
Confidence 69999999999999765 44689999999999999999999998 678999999999999 99985 8999999999
Q ss_pred HHhCCCCC---cccccccCHHHHHHHHHHhcCCC-eEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEechHHHHh---
Q 003387 234 KFLMPSSR---LSEIMDKNYEMKKIILHEYLMTK-RYLIVIDDVWSIDMWDVIQEILPDNQNGSRVLITLTDIRIII--- 306 (824)
Q Consensus 234 ~~l~~~~~---~~~~~~~~~~~~~~~l~~~L~~k-r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~--- 306 (824)
.+++.... .+..+..+.+.+...+++.|++| ||||||||||+.+++ .+.. .+||+||||||++.++.
T Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCC
T ss_pred HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcC
Confidence 99987532 11123445678899999999996 999999999998765 2211 16999999999998876
Q ss_pred ------------------hcccccCC-cCcCccccchhhHHHhcCCCchhHHHHHhHHHhh------hhhhhc-c-CCCc
Q 003387 307 ------------------SFQFEDGE-NMRLDLVPTGGPLRATYKGRPFLILYHGSISLEE------NIREAV-E-TPLG 359 (824)
Q Consensus 307 ------------------~f~~~~~~-~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~------~~~~~~-~-~~~~ 359 (824)
+|...... ..++.+.+++++|+++|+|+||||+++|+.|..+ ...+.+ . ...+
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~~~l~~~l~~~~~~~ 362 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVG 362 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSST
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccchHHHHHHhHHHhhcccHHH
Confidence 33333211 1135677899999999999999999999987211 111122 1 2227
Q ss_pred ccccccc---cCCCCchHHHh-----------HhccCCCCceechhHHHHHHHHc--CCCCC-----ChHHHHHHHHHHH
Q 003387 360 LRYIKCL---MLPFCLKPCFI-----------YLSVFPAHQEISTRQLYQLWIAE--GFIPD-----NSEATAESYLEQL 418 (824)
Q Consensus 360 ~~~~l~~---~L~~~lk~cfl-----------~~s~fp~~~~i~~~~Li~~W~a~--g~i~~-----~~e~~~~~~~~~L 418 (824)
+..++.+ +||+++|.||+ |||+||+++.|+ +++|+|+ ||+.+ +.+++++ |+++|
T Consensus 363 i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L 437 (549)
T 2a5y_B 363 VECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRL 437 (549)
T ss_dssp TCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHT
T ss_pred HHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHH
Confidence 8888877 99999999999 999999999999 8999999 99975 4677777 99999
Q ss_pred HhccccceeecCCCCcEEEEEcCccHHHHHHhhc
Q 003387 419 IKEGFVEAKKRKAGGTINTCSIPGRWRPVLHTVP 452 (824)
Q Consensus 419 v~rsllq~~~~~~~g~~~~~~mHdlv~dla~~~~ 452 (824)
+++||++....+ ...+|+|||++|++|++++
T Consensus 438 ~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~ 468 (549)
T 2a5y_B 438 SKRGALLSGKRM---PVLTFKIDHIIHMFLKHVV 468 (549)
T ss_dssp TTBSSCSEEECS---SSCEEECCHHHHHHHHTTS
T ss_pred HHcCCeeEecCC---CceEEEeChHHHHHHHHHH
Confidence 999999987643 3457999999999999988
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.1e-34 Score=369.11 Aligned_cols=282 Identities=18% Similarity=0.215 Sum_probs=222.8
Q ss_pred CCCCCCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccc-cCCC-ceeEEEECCCCCCCC--HH
Q 003387 151 SSSKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYV-KHYF-DCHAWITEPYSNEYD--AD 226 (824)
Q Consensus 151 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~-~~~F-~~~~wv~~~vs~~~~--~~ 226 (824)
.+.+...+|||++++++|.++|...+++.++|+|+||||+||||||+++|++.+. ..+| +.++||+ +++..+ ..
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~ 196 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS--IGKQDKSGLL 196 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEE--CCSCCHHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEE--ECCcCchHHH
Confidence 3445678999999999999999877677999999999999999999999997543 5556 5677999 988644 34
Q ss_pred HHHHHHHHHhCCCCCcccccccCHHHHHHHHHHhcCCC--eEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEechHHH
Q 003387 227 QILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTK--RYLIVIDDVWSIDMWDVIQEILPDNQNGSRVLITLTDIRI 304 (824)
Q Consensus 227 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~k--r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v 304 (824)
..++.++..+............+.+.+...++..|.+| ||||||||||+..+|..+ ++||+||||||++.+
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~ 269 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSV 269 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTT
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHH
Confidence 55777888887644322223457788999999999887 999999999998777643 579999999999988
Q ss_pred Hh----------------------hcccccCCcCcCccccchhhHHHhcCCCchhHHHHHhHHHhhh-----hhhhc-c-
Q 003387 305 II----------------------SFQFEDGENMRLDLVPTGGPLRATYKGRPFLILYHGSISLEEN-----IREAV-E- 355 (824)
Q Consensus 305 ~~----------------------~f~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~~-----~~~~~-~- 355 (824)
+. +|.... ....+.+.+++++|+++|+|+||||+++|+.|.... ....+ .
T Consensus 270 ~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~-~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~~~l~~l~~~ 348 (1249)
T 3sfz_A 270 TDSVMGPKHVVPVESGLGREKGLEILSLFV-NMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNK 348 (1249)
T ss_dssp TTTCCSCBCCEECCSSCCHHHHHHHHHHHH-TSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSSCHHHHHHHHHSC
T ss_pred HHhhcCCceEEEecCCCCHHHHHHHHHHhh-CCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChhHHHHHHHHHhhh
Confidence 74 222211 133456678899999999999999999999993221 11122 0
Q ss_pred ----------CCC-cccccccc---cCCCCchHHHhHhccCCCCceechhHHHHHHHHcCCCCCChHHHHHHHHHHHHhc
Q 003387 356 ----------TPL-GLRYIKCL---MLPFCLKPCFIYLSVFPAHQEISTRQLYQLWIAEGFIPDNSEATAESYLEQLIKE 421 (824)
Q Consensus 356 ----------~~~-~~~~~l~~---~L~~~lk~cfl~~s~fp~~~~i~~~~Li~~W~a~g~i~~~~e~~~~~~~~~Lv~r 421 (824)
... .+..++.+ .||++.|.||+|||+||+++.|+++.++.+|.++ ++.++.++++|+++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------~~~~~~~l~~L~~~ 421 (1249)
T 3sfz_A 349 QFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------TEEVEDILQEFVNK 421 (1249)
T ss_dssp CCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHT
T ss_pred hhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------HHHHHHHHHHHHhc
Confidence 011 35666666 9999999999999999999999999999999765 46689999999999
Q ss_pred cccceeecCCCCcEEEEEcCccHHHHHHhhc
Q 003387 422 GFVEAKKRKAGGTINTCSIPGRWRPVLHTVP 452 (824)
Q Consensus 422 sllq~~~~~~~g~~~~~~mHdlv~dla~~~~ 452 (824)
||++... ++...+|+|||++|++++..+
T Consensus 422 sl~~~~~---~~~~~~~~~h~l~~~~~~~~~ 449 (1249)
T 3sfz_A 422 SLLFCNR---NGKSFCYYLHDLQVDFLTEKN 449 (1249)
T ss_dssp TSCEEEE---SSSSEEEECCHHHHHHHHHHT
T ss_pred cceEEec---CCCceEEEecHHHHHHHHhhh
Confidence 9999765 345568999999999999876
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=2e-34 Score=333.93 Aligned_cols=269 Identities=18% Similarity=0.129 Sum_probs=204.4
Q ss_pred CceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCce-eEEEECCCCCCCCHHHHHHHHHHH
Q 003387 157 DTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDC-HAWITEPYSNEYDADQILDIVIKF 235 (824)
Q Consensus 157 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~-~~wv~~~vs~~~~~~~~~~~i~~~ 235 (824)
..|||+.++++|.++|...+ +.++|+|+||||+||||||+++|++.+++.+|+. ++||+ +++.++...++..|+..
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs--Vs~~~d~~~IL~~Ll~l 205 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN--LKNCNSPETVLEMLQKL 205 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE--CCCSSSHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE--eCCCCCHHHHHHHHHHH
Confidence 35999999999999998643 3899999999999999999999998788999986 89999 99999998888888775
Q ss_pred hCCCC-----Ccc--cccccCHHHHHHHHHHhc---CCCeEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEechHHHH
Q 003387 236 LMPSS-----RLS--EIMDKNYEMKKIILHEYL---MTKRYLIVIDDVWSIDMWDVIQEILPDNQNGSRVLITLTDIRII 305 (824)
Q Consensus 236 l~~~~-----~~~--~~~~~~~~~~~~~l~~~L---~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~ 305 (824)
++... ... .....+.+.+...+++.| ++||+||||||||+.+.|+.+. +||+||||||++.++
T Consensus 206 L~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va 278 (1221)
T 1vt4_I 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVT 278 (1221)
T ss_dssp HHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHH
T ss_pred HhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHH
Confidence 43210 000 001123456677777766 7899999999999999998763 599999999999988
Q ss_pred hhcccccC---C-------------------cCcCccccchhhHHHhcCCCchhHHHHHhHHHhh---hhhhhccCCCcc
Q 003387 306 ISFQFEDG---E-------------------NMRLDLVPTGGPLRATYKGRPFLILYHGSISLEE---NIREAVETPLGL 360 (824)
Q Consensus 306 ~~f~~~~~---~-------------------~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~---~~~~~~~~~~~~ 360 (824)
........ + .......++.. +.|+|+||||+++|+.|... ...|.......+
T Consensus 279 ~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~---eICgGLPLALkLaGs~Lr~k~~s~eeW~~~~~~~I 355 (1221)
T 1vt4_I 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR---EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355 (1221)
T ss_dssp HHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHHH---HHCCCCHHHHHHHHHHHHHSCSSHHHHHHCSCHHH
T ss_pred HhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCCHHHHHH---HHhCCCHHHHHHHHHHHhCCCCCHHHHhcCChhHH
Confidence 51111000 0 00001122222 34999999999999999433 122332222267
Q ss_pred cccccc---cCCCCc-hHHHhHhccCCCCceechhHHHHHHHHcCCCCCChHHHHHHHHHHHHhccccceeecCCCCcEE
Q 003387 361 RYIKCL---MLPFCL-KPCFIYLSVFPAHQEISTRQLYQLWIAEGFIPDNSEATAESYLEQLIKEGFVEAKKRKAGGTIN 436 (824)
Q Consensus 361 ~~~l~~---~L~~~l-k~cfl~~s~fp~~~~i~~~~Li~~W~a~g~i~~~~e~~~~~~~~~Lv~rsllq~~~~~~~g~~~ 436 (824)
..+|++ .||++. |.||+|||+||+++.|+++.++.+|+++|. +.++.++++|+++||++... ...
T Consensus 356 ~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGe------edAe~~L~eLvdRSLLq~d~-----~~~ 424 (1221)
T 1vt4_I 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK------SDVMVVVNKLHKYSLVEKQP-----KES 424 (1221)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS------HHHHHHHHHHHTSSSSSBCS-----SSS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH------HHHHHHHHHHHhhCCEEEeC-----CCC
Confidence 777777 999999 999999999999999999999999999872 45889999999999999842 224
Q ss_pred EEEcCccHHHHHH
Q 003387 437 TCSIPGRWRPVLH 449 (824)
Q Consensus 437 ~~~mHdlv~dla~ 449 (824)
.|+|||++++++.
T Consensus 425 rYrMHDLllELr~ 437 (1221)
T 1vt4_I 425 TISIPSIYLELKV 437 (1221)
T ss_dssp EEBCCCHHHHHHH
T ss_pred EEEehHHHHHHhc
Confidence 6999999999764
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.97 E-value=8e-31 Score=306.04 Aligned_cols=278 Identities=18% Similarity=0.237 Sum_probs=209.0
Q ss_pred CCCCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccc-cCCC-ceeEEEECCCCCCCCHHHHHH
Q 003387 153 SKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYV-KHYF-DCHAWITEPYSNEYDADQILD 230 (824)
Q Consensus 153 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~-~~~F-~~~~wv~~~vs~~~~~~~~~~ 230 (824)
.....+|||+.++++|.++|....++.++|+|+||||+||||||+.+|++.++ ..+| +.++|++ +++. +...++.
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~--~~~~-~~~~~~~ 197 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS--VGKQ-DKSGLLM 197 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE--EESC-CHHHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE--CCCC-chHHHHH
Confidence 34578999999999999999875556899999999999999999999997666 7889 5899999 8765 4444444
Q ss_pred HH---HHHhCCCCCcccccccCHHHHHHHHHHhcCC--CeEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEechHHHH
Q 003387 231 IV---IKFLMPSSRLSEIMDKNYEMKKIILHEYLMT--KRYLIVIDDVWSIDMWDVIQEILPDNQNGSRVLITLTDIRII 305 (824)
Q Consensus 231 ~i---~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~--kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~ 305 (824)
.+ +..++...........+.+.....+...+.+ +++||||||||+...++. + ++||+||||||+..++
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~----l---~~~~~ilvTsR~~~~~ 270 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA----F---DSQCQILLTTRDKSVT 270 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT----T---CSSCEEEEEESCGGGG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH----h---cCCCeEEEECCCcHHH
Confidence 43 4455532111112345667788888888866 799999999998766543 2 5689999999999876
Q ss_pred h----------------------hcccccCCcCcCccccchhhHHHhcCCCchhHHHHHhHHHhhh-----hhhhccC--
Q 003387 306 I----------------------SFQFEDGENMRLDLVPTGGPLRATYKGRPFLILYHGSISLEEN-----IREAVET-- 356 (824)
Q Consensus 306 ~----------------------~f~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~~-----~~~~~~~-- 356 (824)
. +|....+ .......+.+.+|+++|+|+|+|+..+|+.+.... ....+..
T Consensus 271 ~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~-~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~w~~~l~~l~~~~ 349 (591)
T 1z6t_A 271 DSVMGPKYVVPVESSLGKEKGLEILSLFVN-MKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQ 349 (591)
T ss_dssp TTCCSCEEEEECCSSCCHHHHHHHHHHHHT-SCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTTCHHHHHHHHHSCC
T ss_pred HhcCCCceEeecCCCCCHHHHHHHHHHHhC-CCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCchhHHHHHHHHHHhH
Confidence 5 2222111 11233467789999999999999999999993222 2222211
Q ss_pred ----------CC-cccccccc---cCCCCchHHHhHhccCCCCceechhHHHHHHHHcCCCCCChHHHHHHHHHHHHhcc
Q 003387 357 ----------PL-GLRYIKCL---MLPFCLKPCFIYLSVFPAHQEISTRQLYQLWIAEGFIPDNSEATAESYLEQLIKEG 422 (824)
Q Consensus 357 ----------~~-~~~~~l~~---~L~~~lk~cfl~~s~fp~~~~i~~~~Li~~W~a~g~i~~~~e~~~~~~~~~Lv~rs 422 (824)
.. .+..++.. .||++.|.||++||+||+++.|+.+.++..|.++ .+.+..++++|+++|
T Consensus 350 ~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------~~~~~~~l~~L~~~~ 422 (591)
T 1z6t_A 350 FKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFVNKS 422 (591)
T ss_dssp CCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTT
T ss_pred HHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-------HHHHHHHHHHHHhCc
Confidence 11 34455555 9999999999999999999999999999999653 345789999999999
Q ss_pred ccceeecCCCCcEEEEEcCccHHHHHHhh
Q 003387 423 FVEAKKRKAGGTINTCSIPGRWRPVLHTV 451 (824)
Q Consensus 423 llq~~~~~~~g~~~~~~mHdlv~dla~~~ 451 (824)
|++... ++....|+||+++|++++..
T Consensus 423 Ll~~~~---~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 423 LLFCDR---NGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp SSEEEE---ETTEEEEECCHHHHHHHHHH
T ss_pred CeEEec---CCCccEEEEcHHHHHHHHhh
Confidence 998654 33456799999999999886
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=2.9e-25 Score=260.29 Aligned_cols=324 Identities=19% Similarity=0.114 Sum_probs=202.2
Q ss_pred CCCCeeEEEEEecCCCccccc-cc--CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccC-CccCCCCC
Q 003387 469 SPKKAKRLNAVEREGDFACLD-DY--DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQY-PSGIENLF 544 (824)
Q Consensus 469 ~~~~~r~lsl~~~~~~~~~~~-~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~l-p~~i~~l~ 544 (824)
.+..++++.+. ++....++. .+ +++|++|.+.++... ...+..|..+++|++|+|++|.++.+ |..+++++
T Consensus 30 ~~~~l~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~----~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 104 (606)
T 3vq2_A 30 IPSSTKNIDLS-FNPLKILKSYSFSNFSELQWLDLSRCEIE----TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT 104 (606)
T ss_dssp SCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT
T ss_pred CCCCcCEEECC-CCCcCEeChhhccCCccCcEEeCCCCccc----ccCHHHhhchhhcCEeECCCCcccccChhhcCCcc
Confidence 45678888888 554444443 33 788888888877653 24456778888888888888887755 67788888
Q ss_pred cceEEeecCCCCCccChhhhhcCCCccEeecCCcccc--ccchhhhccccCceecCCCccCCCCCCCC------------
Q 003387 545 LLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYID--HTADEFWKMNKLRHLNFGSITLPAHPGKF------------ 610 (824)
Q Consensus 545 ~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~~~~~~~p~------------ 610 (824)
+|++|++++|.+..+|+..++++++|++|++++|.+. .+|..++++++|++|++++|.+.......
T Consensus 105 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~ 184 (606)
T 3vq2_A 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL 184 (606)
T ss_dssp TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCC
T ss_pred cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccc
Confidence 8888888888887776333378888888888888776 36777888888888888777554210001
Q ss_pred --------------------------------------------------------------------------------
Q 003387 611 -------------------------------------------------------------------------------- 610 (824)
Q Consensus 611 -------------------------------------------------------------------------------- 610 (824)
T Consensus 185 ~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 264 (606)
T 3vq2_A 185 SLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEE
T ss_pred eeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHh
Confidence
Q ss_pred --------------------------------------CCCCCCCCeeeccCC-CcchhhhcCCCCccceEEEecc----
Q 003387 611 --------------------------------------CGSLENLNFISALHP-CCCTEDILGRLPNLRNLRIRGD---- 647 (824)
Q Consensus 611 --------------------------------------i~~L~~L~~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~---- 647 (824)
++.+++|+.|++..+ ...++. + .+++|+.|+++++
T Consensus 265 ~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~-~-~l~~L~~L~l~~n~~~~ 342 (606)
T 3vq2_A 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPT-L-DLPFLKSLTLTMNKGSI 342 (606)
T ss_dssp EEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCC-C-CCSSCCEEEEESCSSCE
T ss_pred heeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCccccc-C-CCCccceeeccCCcCcc
Confidence 111112222222210 011111 1 3444444444444
Q ss_pred ------------------cccchhhHHHHhccCCCCCeEEEeccC---------CCCCccEEEeCcc-----------Cc
Q 003387 648 ------------------LSYNQSLLSKSLCRLSCLESLKLANES---------KMPRLSKIVLAEY-----------LF 689 (824)
Q Consensus 648 ------------------~~~~~~~l~~~l~~l~~L~~L~l~~~~---------~~~~L~~l~l~~~-----------~~ 689 (824)
.-......+..+..+++|++|++++|. ..++|+.|.+.++ ..
T Consensus 343 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 422 (606)
T 3vq2_A 343 SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLS 422 (606)
T ss_dssp ECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTT
T ss_pred chhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhc
Confidence 211111125566777788888877653 3466777777654 34
Q ss_pred CCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCccceeccCcccCccEE
Q 003387 690 PHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECL 769 (824)
Q Consensus 690 ~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L 769 (824)
+++|+.|++++|.+.+..+..++.+++|+.|++++|.+.+..++..++.+++|++|++++|......+..+..+++|+.|
T Consensus 423 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 502 (606)
T 3vq2_A 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502 (606)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEE
Confidence 67788888888877666677777778888888877776654445556667777777777765333333445566667777
Q ss_pred EEecCCCCCCCccccccCccCcEEEecCCc
Q 003387 770 IINPCAYLKKMPEQLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 770 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 799 (824)
++++|......|..+.++++|+.|++++|.
T Consensus 503 ~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 503 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp ECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred ECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 776665544445566666666666666664
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=1.8e-26 Score=277.20 Aligned_cols=343 Identities=19% Similarity=0.104 Sum_probs=179.6
Q ss_pred CCeeEEEEEecCCCccccccc--CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCc-cCCccCCC-----
Q 003387 471 KKAKRLNAVEREGDFACLDDY--DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLI-QYPSGIEN----- 542 (824)
Q Consensus 471 ~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~-~lp~~i~~----- 542 (824)
.+++++.+..+......+..+ +++|++|.+.++... ..++...+..+++|++|++++|.+. .+|..+++
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~---~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L 370 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS---GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 370 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEE---EECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTC
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCccc---CcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCC
Confidence 456666665222222233334 666666666665442 1233344556666666666666554 45544443
Q ss_pred ----------------------CCcceEEeecCCCCC-ccChhhhhcCCCccEeecCCcccc-ccchhhhccccCceecC
Q 003387 543 ----------------------LFLLRYLKLNIPSLN-SLPSSLLSNLLNLYTLDMPFSYID-HTADEFWKMNKLRHLNF 598 (824)
Q Consensus 543 ----------------------l~~Lr~L~L~~~~i~-~lp~~i~~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~L 598 (824)
+++|++|++++|.+. .+|..+ +++++|++|++++|.+. .+|..++++++|++|++
T Consensus 371 ~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 449 (768)
T 3rgz_A 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL-SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449 (768)
T ss_dssp SEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG-GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred cEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH-hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEEC
Confidence 344555555555544 445555 66666777777666554 45666666777777777
Q ss_pred CCccCCCCCCC-CCCCCCCCCeeeccCCC--cchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccC-
Q 003387 599 GSITLPAHPGK-FCGSLENLNFISALHPC--CCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANES- 674 (824)
Q Consensus 599 ~~~~~~~~~~p-~i~~L~~L~~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~- 674 (824)
++|.+.+ .+| .++.+++|+.|+++.+. ..++..+..+++|+.|+++++. ..+.+|..++.+++|+.|++++|.
T Consensus 450 ~~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~--l~~~~p~~~~~l~~L~~L~L~~N~l 526 (768)
T 3rgz_A 450 WLNMLEG-EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR--LTGEIPKWIGRLENLAILKLSNNSF 526 (768)
T ss_dssp CSSCCCS-CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC--CCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCCcccC-cCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCc--cCCcCChHHhcCCCCCEEECCCCcc
Confidence 6666654 344 66667777777766321 1223336677777777777764 334555666666677777766642
Q ss_pred ---------CCCCccEEEeCcc----------------------------------------------------------
Q 003387 675 ---------KMPRLSKIVLAEY---------------------------------------------------------- 687 (824)
Q Consensus 675 ---------~~~~L~~l~l~~~---------------------------------------------------------- 687 (824)
.+++|+.|++.++
T Consensus 527 ~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (768)
T 3rgz_A 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGG
T ss_pred cCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhc
Confidence 2334444444332
Q ss_pred ----------------------CcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEE
Q 003387 688 ----------------------LFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVL 745 (824)
Q Consensus 688 ----------------------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L 745 (824)
..+++|+.|+|++|.+.+.+|..++++++|+.|+|++|.+.+ .++..++.+++|+.|
T Consensus 607 l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g-~ip~~l~~L~~L~~L 685 (768)
T 3rgz_A 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG-SIPDEVGDLRGLNIL 685 (768)
T ss_dssp GGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS-CCCGGGGGCTTCCEE
T ss_pred cccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCC-CCChHHhCCCCCCEE
Confidence 012345556666666655566666666666666666555554 234445556666666
Q ss_pred eeccCCCCccceeccCcccCccEEEEecCCCCCCCccccccCccCcEEEecCCc----HHHHHHHhhccCcceeeeeecc
Q 003387 746 HLKSMLWLEEWTMGNAAMPKLECLIINPCAYLKKMPEQLWYIKSLNKFDCWWPQ----PELRQKLREFEDKEQCGIQLYP 821 (824)
Q Consensus 746 ~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~----~~l~~~~~~~~~~~~~~i~hip 821 (824)
+|++|.....+|..++.+++|+.|++++|+....+|.. ..+.++....+.++| ..+. .+...++++|.+|+|+|
T Consensus 686 dLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~~~~~~~~~~~ 763 (768)
T 3rgz_A 686 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLP-RCDPSNADGYAHHQRSH 763 (768)
T ss_dssp ECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEESTTSC-CCCSCC-----------
T ss_pred ECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCCCCc-CCCCCccCCCCCCCCcc
Confidence 66665544455555556666666666666555555532 223333333333332 1121 46667788999999998
Q ss_pred CC
Q 003387 822 YG 823 (824)
Q Consensus 822 ~~ 823 (824)
.+
T Consensus 764 ~~ 765 (768)
T 3rgz_A 764 HH 765 (768)
T ss_dssp --
T ss_pred cc
Confidence 75
No 7
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=2.1e-25 Score=246.39 Aligned_cols=289 Identities=17% Similarity=0.161 Sum_probs=185.1
Q ss_pred CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCc-cCCCCCcceEEeecCCCCCccChhhhhcCCCc
Q 003387 492 DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLNSLPSSLLSNLLNL 570 (824)
Q Consensus 492 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L 570 (824)
.++++.|.+.++... .++...|..+++|++|+|++|.++.+|. .++.+++|++|++++|.+..+|+..++++++|
T Consensus 44 l~~l~~l~l~~~~l~----~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR----KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GCCCSEEEEESCEES----EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCceEEEecCCchh----hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 455555555554432 2334455556666666666666554432 55556666666666666665554433566666
Q ss_pred cEeecCCccccccchh-hhccccCceecCCCccCCCCCCC-CCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEeccc
Q 003387 571 YTLDMPFSYIDHTADE-FWKMNKLRHLNFGSITLPAHPGK-FCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDL 648 (824)
Q Consensus 571 ~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~~~~~~p-~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 648 (824)
++|++++|.+..+|.. +.++++|++|++++|.+.. ..| .++.+++|+.|+++.+...... +..+++|+.|+++++.
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNL 197 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTSSCTTCCEEECCSSCCSBCC-GGGCTTCSEEECCSSC
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc-cChhhccCCCCCCEEECCCCcCCccc-cccccccceeeccccc
Confidence 6666666666666554 3556666666666665542 222 4555666666665532222122 4455555555555542
Q ss_pred ccchhhHHHHhccCCCCCeEEEeccC-------CCCCccEEEeCcc--------CcCCCceEEEEEcccCCCCCcccccC
Q 003387 649 SYNQSLLSKSLCRLSCLESLKLANES-------KMPRLSKIVLAEY--------LFPHSLTHLSFSNTDLMDDPMPTLEK 713 (824)
Q Consensus 649 ~~~~~~l~~~l~~l~~L~~L~l~~~~-------~~~~L~~l~l~~~--------~~~~~L~~L~L~~~~l~~~~~~~l~~ 713 (824)
-. .+...++|+.|++++|. .+++|+.|.+.++ ..+++|++|++++|.+.+..+..++.
T Consensus 198 l~-------~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (390)
T 3o6n_A 198 LS-------TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK 270 (390)
T ss_dssp CS-------EEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred cc-------ccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccc
Confidence 10 11222345555555432 2234555554443 56789999999999988777888999
Q ss_pred CCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCccceeccCcccCccEEEEecCCCCCCCccccccCccCcEE
Q 003387 714 LPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAYLKKMPEQLWYIKSLNKF 793 (824)
Q Consensus 714 l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L 793 (824)
+++|+.|++++|.+.+ ++.....+++|++|++++|. +..++.....+++|+.|++++|+. ..+| +..+++|+.|
T Consensus 271 l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~i-~~~~--~~~~~~L~~L 344 (390)
T 3o6n_A 271 MQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSI-VTLK--LSTHHTLKNL 344 (390)
T ss_dssp CSSCCEEECCSSCCCE--EECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSCC-CCCC--CCTTCCCSEE
T ss_pred cccCCEEECCCCcCcc--cCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCcc-ceeC--chhhccCCEE
Confidence 9999999999988765 45556789999999999985 777887788899999999999984 4555 6788999999
Q ss_pred EecCCc
Q 003387 794 DCWWPQ 799 (824)
Q Consensus 794 ~l~~c~ 799 (824)
+++++|
T Consensus 345 ~l~~N~ 350 (390)
T 3o6n_A 345 TLSHND 350 (390)
T ss_dssp ECCSSC
T ss_pred EcCCCC
Confidence 999988
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.1e-25 Score=260.08 Aligned_cols=289 Identities=17% Similarity=0.157 Sum_probs=221.2
Q ss_pred CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCC-ccCCCCCcceEEeecCCCCCccChhhhhcCCCc
Q 003387 492 DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNL 570 (824)
Q Consensus 492 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L 570 (824)
.++++.|.+.++... .+++.+|..+++|++|+|++|.+..+| ..++.+++|++|+|++|.+..+|+..|+++++|
T Consensus 50 l~~l~~l~l~~~~l~----~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR----KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GCCCSEEEESSCEES----EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCceEEEeeCCCCC----CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 677777777776553 355667788888888888888887554 477888888888888888888777665888888
Q ss_pred cEeecCCccccccchh-hhccccCceecCCCccCCCCCCC-CCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEeccc
Q 003387 571 YTLDMPFSYIDHTADE-FWKMNKLRHLNFGSITLPAHPGK-FCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDL 648 (824)
Q Consensus 571 ~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~~~~~~p-~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 648 (824)
++|+|++|.+..+|.. ++++++|++|++++|.+.. ..| .++.+++|+.|+++.+...... ++.+++|+.|+++++.
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNL 203 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECTTSCCSBCC-GGGCTTCSEEECCSSC
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCC-CChhhhhcCCcCcEEECcCCCCCCcC-hhhhhhhhhhhcccCc
Confidence 8888888888888766 4788888888888887764 344 6788888888888743332223 5667788888887764
Q ss_pred ccchhhHHHHhccCCCCCeEEEeccC-------CCCCccEEEeCcc--------CcCCCceEEEEEcccCCCCCcccccC
Q 003387 649 SYNQSLLSKSLCRLSCLESLKLANES-------KMPRLSKIVLAEY--------LFPHSLTHLSFSNTDLMDDPMPTLEK 713 (824)
Q Consensus 649 ~~~~~~l~~~l~~l~~L~~L~l~~~~-------~~~~L~~l~l~~~--------~~~~~L~~L~L~~~~l~~~~~~~l~~ 713 (824)
-. .+...++|+.|++++|. .+++|+.|.+.++ ..+++|+.|+|++|.+.+..|..++.
T Consensus 204 l~-------~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 276 (597)
T 3oja_B 204 LS-------TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK 276 (597)
T ss_dssp CS-------EEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred cc-------cccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence 11 12344567777777643 2346677766654 56789999999999988877889999
Q ss_pred CCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCccceeccCcccCccEEEEecCCCCCCCccccccCccCcEE
Q 003387 714 LPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAYLKKMPEQLWYIKSLNKF 793 (824)
Q Consensus 714 l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L 793 (824)
+++|+.|+|++|.+.+ ++.....+|+|++|+|++|. +..+|..+..+++|+.|++++|+. ..+| +..+++|+.|
T Consensus 277 l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~l-~~~~--~~~~~~L~~L 350 (597)
T 3oja_B 277 MQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSI-VTLK--LSTHHTLKNL 350 (597)
T ss_dssp CSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSCC-CCCC--CCTTCCCSEE
T ss_pred ccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCCC-CCcC--hhhcCCCCEE
Confidence 9999999999988875 55666789999999999986 667887788899999999999985 4455 6788999999
Q ss_pred EecCCc
Q 003387 794 DCWWPQ 799 (824)
Q Consensus 794 ~l~~c~ 799 (824)
++++||
T Consensus 351 ~l~~N~ 356 (597)
T 3oja_B 351 TLSHND 356 (597)
T ss_dssp ECCSSC
T ss_pred EeeCCC
Confidence 999988
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=5e-25 Score=262.97 Aligned_cols=292 Identities=17% Similarity=0.168 Sum_probs=141.7
Q ss_pred CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCcc-Cc--cCCccCCCCC-------cceEEeecCCCCCccCh
Q 003387 492 DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLV-LI--QYPSGIENLF-------LLRYLKLNIPSLNSLPS 561 (824)
Q Consensus 492 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~-i~--~lp~~i~~l~-------~Lr~L~L~~~~i~~lp~ 561 (824)
+++|+.|.+.++... ..++..|..+++|++|+|++|. ++ .+|..++++. +|++|+|++|.+..+|.
T Consensus 490 L~~L~~L~Ls~N~l~----~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~ 565 (876)
T 4ecn_A 490 LKDLTDVELYNCPNM----TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA 565 (876)
T ss_dssp CTTCCEEEEESCTTC----CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCC
T ss_pred CCCCCEEECcCCCCC----ccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCC
Confidence 344555555444321 1222444455555555555554 43 2444333332 55555555555555554
Q ss_pred --hhhhcCCCccEeecCCccccccchhhhccccCceecCCCccCCCCCCC-CCCCCCC-CCeeeccCC-CcchhhhcCCC
Q 003387 562 --SLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGK-FCGSLEN-LNFISALHP-CCCTEDILGRL 636 (824)
Q Consensus 562 --~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~~~p-~i~~L~~-L~~l~~~~~-~~~~~~~l~~l 636 (824)
.+ +++++|++|+|++|.+..+| .++++++|++|++++|.+. .+| .++++++ |+.|+++.+ ...++..+..+
T Consensus 566 ~~~l-~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~ 641 (876)
T 4ecn_A 566 SASL-QKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAK 641 (876)
T ss_dssp HHHH-TTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTT
T ss_pred hhhh-hcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCCCCcCchhhhcc
Confidence 44 55555555555555444555 4455555555555555544 333 4555554 555555421 11122212222
Q ss_pred C--ccceEEEecccccchhh---HHHHhc--cCCCCCeEEEeccC----------CCCCccEEEeCcc----------C-
Q 003387 637 P--NLRNLRIRGDLSYNQSL---LSKSLC--RLSCLESLKLANES----------KMPRLSKIVLAEY----------L- 688 (824)
Q Consensus 637 ~--~L~~L~l~~~~~~~~~~---l~~~l~--~l~~L~~L~l~~~~----------~~~~L~~l~l~~~----------~- 688 (824)
+ +|+.|+++++. .... ++..+. .+++|+.|++++|. .+++|+.|.++++ .
T Consensus 642 ~~~~L~~L~Ls~N~--l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~ 719 (876)
T 4ecn_A 642 SVYVMGSVDFSYNK--IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKP 719 (876)
T ss_dssp CSSCEEEEECCSSC--TTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSC
T ss_pred ccCCCCEEECcCCc--CCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcc
Confidence 2 24555554442 1111 111111 12245555555432 2344555555443 0
Q ss_pred ------cCCCceEEEEEcccCCCCCccccc--CCCCCCeEEeeccccCCCeeeecCCCCCCccEEeecc------CCCCc
Q 003387 689 ------FPHSLTHLSFSNTDLMDDPMPTLE--KLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKS------MLWLE 754 (824)
Q Consensus 689 ------~~~~L~~L~L~~~~l~~~~~~~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~------~~~l~ 754 (824)
.+++|+.|+|++|.+. .+|..+. .+++|+.|+|++|.+.+ ++.....+++|+.|+|++ |....
T Consensus 720 ~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~ 796 (876)
T 4ecn_A 720 KDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILR 796 (876)
T ss_dssp TTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCC
T ss_pred ccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc--cchhhhcCCCCCEEECCCCCCcccccccc
Confidence 1125666666666655 4455554 66666666666666654 444455666666666654 33334
Q ss_pred cceeccCcccCccEEEEecCCCCCCCccccccCccCcEEEecCCc
Q 003387 755 EWTMGNAAMPKLECLIINPCAYLKKMPEQLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 755 ~l~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 799 (824)
.+|..+..+++|+.|++++|.. ..+|..+. ++|+.|++++||
T Consensus 797 ~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 797 QWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNP 838 (876)
T ss_dssp CCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCT
T ss_pred cChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCC
Confidence 4555556666666666666654 56665543 466666666665
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=2.3e-24 Score=244.75 Aligned_cols=303 Identities=20% Similarity=0.170 Sum_probs=236.2
Q ss_pred CcccccccCCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccC-CccCCCCCcceEEeecCCCCCccChh
Q 003387 484 DFACLDDYDSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLNSLPSS 562 (824)
Q Consensus 484 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~ 562 (824)
...+|..+.++++.|.+.++... ...+..|..+++|++|+|++|.++.+ |..++++++|++|+|++|.+..+|..
T Consensus 23 l~~ip~~~~~~l~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 98 (477)
T 2id5_A 23 FVAVPEGIPTETRLLDLGKNRIK----TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG 98 (477)
T ss_dssp CSSCCSCCCTTCSEEECCSSCCC----EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT
T ss_pred cCcCCCCCCCCCcEEECCCCccc----eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc
Confidence 34466656788999999888764 24567889999999999999998855 77899999999999999999999987
Q ss_pred hhhcCCCccEeecCCcccccc-chhhhccccCceecCCCccCCCCCCC-CCCCCCCCCeeeccCC--CcchhhhcCCCCc
Q 003387 563 LLSNLLNLYTLDMPFSYIDHT-ADEFWKMNKLRHLNFGSITLPAHPGK-FCGSLENLNFISALHP--CCCTEDILGRLPN 638 (824)
Q Consensus 563 i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~~~~~~p-~i~~L~~L~~l~~~~~--~~~~~~~l~~l~~ 638 (824)
.|.++++|++|+|++|.+..+ |..+..+++|++|++++|.+.. ..| .++.+++|+.|++..+ .......+..+++
T Consensus 99 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 177 (477)
T 2id5_A 99 VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY-ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177 (477)
T ss_dssp SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE-ECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTT
T ss_pred cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccce-eChhhccCCCCCCEEECCCCcCcccChhHhcccCC
Confidence 668999999999999988877 4568899999999999998864 333 8889999999998842 2233334788999
Q ss_pred cceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCC
Q 003387 639 LRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQ 718 (824)
Q Consensus 639 L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~ 718 (824)
|+.|+++++. .....+..+..+++|+.|+++++. .+..+.. ......+|++|+|++|.+.......+..+++|+
T Consensus 178 L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 251 (477)
T 2id5_A 178 LIVLRLRHLN--INAIRDYSFKRLYRLKVLEISHWP---YLDTMTP-NCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251 (477)
T ss_dssp CCEEEEESCC--CCEECTTCSCSCTTCCEEEEECCT---TCCEECT-TTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCC
T ss_pred CcEEeCCCCc--CcEeChhhcccCcccceeeCCCCc---cccccCc-ccccCccccEEECcCCcccccCHHHhcCccccC
Confidence 9999999875 222333467788899999998642 2333322 223345899999999998765556789999999
Q ss_pred eEEeeccccCCCeeeecCCCCCCccEEeeccCCCCccceeccCcccCccEEEEecCCCCCCCcc-ccccCccCcEEEecC
Q 003387 719 VLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAYLKKMPE-QLWYIKSLNKFDCWW 797 (824)
Q Consensus 719 ~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~ 797 (824)
.|+|++|.+.. .....+..+++|+.|+|++|......+..+..+++|+.|++++|.. +.+|. .+..+++|+.|++++
T Consensus 252 ~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 252 FLNLSYNPIST-IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL-TTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp EEECCSSCCCE-ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCC-SCCCGGGBSCGGGCCEEECCS
T ss_pred eeECCCCcCCc-cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcC-ceeCHhHcCCCcccCEEEccC
Confidence 99999988764 2233467899999999999874333356678899999999999974 45554 578899999999998
Q ss_pred Cc
Q 003387 798 PQ 799 (824)
Q Consensus 798 c~ 799 (824)
+|
T Consensus 330 N~ 331 (477)
T 2id5_A 330 NP 331 (477)
T ss_dssp SC
T ss_pred CC
Confidence 76
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=2.4e-24 Score=243.08 Aligned_cols=321 Identities=15% Similarity=0.106 Sum_probs=242.3
Q ss_pred CCCCeeEEEEEecCCCccc-cccc--CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccC-CccCCCCC
Q 003387 469 SPKKAKRLNAVEREGDFAC-LDDY--DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQY-PSGIENLF 544 (824)
Q Consensus 469 ~~~~~r~lsl~~~~~~~~~-~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~l-p~~i~~l~ 544 (824)
.+..+++|.+. ++....+ +..+ +++|++|.+.++... ..+.+..|..+++|++|+|++|.+..+ |..+++++
T Consensus 28 l~~~l~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~L~~n~~~---~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 103 (455)
T 3v47_A 28 LPAHVNYVDLS-LNSIAELNETSFSRLQDLQFLKVEQQTPG---LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA 103 (455)
T ss_dssp CCTTCCEEECC-SSCCCEECTTTTSSCTTCCEEECCCCSTT---CEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT
T ss_pred CCCccCEEEec-CCccCcCChhHhccCccccEEECcCCccc---ceECcccccccccCCEEeCCCCccCccChhhccCcc
Confidence 55788999998 5554444 4445 899999999988653 234567789999999999999998854 77899999
Q ss_pred cceEEeecCCCCCc-cChh-hhhcCCCccEeecCCcccccc-chh-hhccccCceecCCCccCCCCCCC-CCCCC--CCC
Q 003387 545 LLRYLKLNIPSLNS-LPSS-LLSNLLNLYTLDMPFSYIDHT-ADE-FWKMNKLRHLNFGSITLPAHPGK-FCGSL--ENL 617 (824)
Q Consensus 545 ~Lr~L~L~~~~i~~-lp~~-i~~~L~~L~~L~L~~~~l~~l-p~~-i~~L~~L~~L~L~~~~~~~~~~p-~i~~L--~~L 617 (824)
+|++|++++|.+.. .|.. .++++++|++|++++|.+..+ |.. +.++++|++|++++|.+.. ..| .++.+ .+|
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~~~L 182 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS-ICEEDLLNFQGKHF 182 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC-CCTTTSGGGTTCEE
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc-cChhhhhccccccc
Confidence 99999999999885 3333 238999999999999988887 554 8899999999999998875 333 66655 457
Q ss_pred CeeeccCCCc-chh---------hhcCCCCccceEEEecccccchhhHHHHhccC---CCCCeEEEeccC----------
Q 003387 618 NFISALHPCC-CTE---------DILGRLPNLRNLRIRGDLSYNQSLLSKSLCRL---SCLESLKLANES---------- 674 (824)
Q Consensus 618 ~~l~~~~~~~-~~~---------~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l---~~L~~L~l~~~~---------- 674 (824)
+.+++..+.. .+. ..+..+++|+.|+++++. .....+..+... ++|+.|+++.+.
T Consensus 183 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 260 (455)
T 3v47_A 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG--FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260 (455)
T ss_dssp EEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC--CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCS
T ss_pred cccccccCcccccchhhccccccccccccceeeeEecCCCc--ccccchhhhhccccccceeeEeeccccccccccchhh
Confidence 7777663211 000 113456789999999885 444555554443 677777776531
Q ss_pred ------------CCCCccEEEeCcc----------CcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCee
Q 003387 675 ------------KMPRLSKIVLAEY----------LFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKL 732 (824)
Q Consensus 675 ------------~~~~L~~l~l~~~----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 732 (824)
..++++.+.+.++ ..+++|+.|+|++|.+.+..+..++.+++|+.|++++|.+.+ ..
T Consensus 261 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~ 339 (455)
T 3v47_A 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS-ID 339 (455)
T ss_dssp SCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE-EC
T ss_pred hccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC-cC
Confidence 1246777776654 567899999999999987778899999999999999988754 33
Q ss_pred eecCCCCCCccEEeeccCCCCccc-eeccCcccCccEEEEecCCCCCCCcc-ccccCccCcEEEecCCc
Q 003387 733 TCGSYGFPNLKVLHLKSMLWLEEW-TMGNAAMPKLECLIINPCAYLKKMPE-QLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 733 ~~~~~~~~~L~~L~L~~~~~l~~l-~~~~~~lp~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~ 799 (824)
+..+..+++|++|+|++|. +..+ +..+..+++|+.|++++|... .+|. .+..+++|+.|+++++|
T Consensus 340 ~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 340 SRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp GGGGTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred hhHhcCcccCCEEECCCCc-ccccChhhccccccccEEECCCCccc-cCCHhHhccCCcccEEEccCCC
Confidence 4556889999999999987 4544 667888999999999999754 5665 46899999999999865
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=7.3e-24 Score=230.09 Aligned_cols=299 Identities=17% Similarity=0.149 Sum_probs=225.1
Q ss_pred CCCeeEEEEEecCCCccccccc-CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCccCCCCCcceE
Q 003387 470 PKKAKRLNAVEREGDFACLDDY-DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPSGIENLFLLRY 548 (824)
Q Consensus 470 ~~~~r~lsl~~~~~~~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~ 548 (824)
..+++++.+. +.....++... +++|++|.+.++.... .. . +..+++|++|++++|.++.+| .+..+++|++
T Consensus 43 l~~L~~L~l~-~~~i~~~~~~~~~~~L~~L~l~~n~i~~----~~-~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 43 LESITKLVVA-GEKVASIQGIEYLTNLEYLNLNGNQITD----IS-P-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE 114 (347)
T ss_dssp HTTCSEEECC-SSCCCCCTTGGGCTTCCEEECCSSCCCC----CG-G-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred cccccEEEEe-CCccccchhhhhcCCccEEEccCCcccc----ch-h-hhcCCcCCEEEccCCcccCch-HHcCCCcCCE
Confidence 3567788887 55444444423 8889999988876542 22 2 788889999999998888775 5888889999
Q ss_pred EeecCCCCCccChhhhhcCCCccEeecCCc-cccccchhhhccccCceecCCCccCCCCCCCCCCCCCCCCeeeccCC-C
Q 003387 549 LKLNIPSLNSLPSSLLSNLLNLYTLDMPFS-YIDHTADEFWKMNKLRHLNFGSITLPAHPGKFCGSLENLNFISALHP-C 626 (824)
Q Consensus 549 L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~L~~~~~~~~~~p~i~~L~~L~~l~~~~~-~ 626 (824)
|++++|.+..+|. + .++++|++|++++| .+..++ .+..+++|++|++++|.+. .++.++.+++|+.|+++.+ .
T Consensus 115 L~l~~n~i~~~~~-~-~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~--~~~~~~~l~~L~~L~l~~n~l 189 (347)
T 4fmz_A 115 LYLNEDNISDISP-L-ANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK--DVTPIANLTDLYSLSLNYNQI 189 (347)
T ss_dssp EECTTSCCCCCGG-G-TTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECTTSCC
T ss_pred EECcCCcccCchh-h-ccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcC--CchhhccCCCCCEEEccCCcc
Confidence 9999988888877 5 88899999999888 444444 4888899999988888776 4445778888888888743 2
Q ss_pred cchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCccCcCCCceEEEEEcccCCCC
Q 003387 627 CCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYLFPHSLTHLSFSNTDLMDD 706 (824)
Q Consensus 627 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~ 706 (824)
..+.. +..+++|+.|+++++.-.. .+. +..+++|++|++++|. ++.+. ....+++|+.|++++|.+..
T Consensus 190 ~~~~~-~~~l~~L~~L~l~~n~l~~---~~~-~~~~~~L~~L~l~~n~----l~~~~--~~~~l~~L~~L~l~~n~l~~- 257 (347)
T 4fmz_A 190 EDISP-LASLTSLHYFTAYVNQITD---ITP-VANMTRLNSLKIGNNK----ITDLS--PLANLSQLTWLEIGTNQISD- 257 (347)
T ss_dssp CCCGG-GGGCTTCCEEECCSSCCCC---CGG-GGGCTTCCEEECCSSC----CCCCG--GGTTCTTCCEEECCSSCCCC-
T ss_pred ccccc-ccCCCccceeecccCCCCC---Cch-hhcCCcCCEEEccCCc----cCCCc--chhcCCCCCEEECCCCccCC-
Confidence 23334 7778888888888875221 111 6778888999888762 33322 14678999999999998764
Q ss_pred CcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCccceeccCcccCccEEEEecCCCCCCCcccccc
Q 003387 707 PMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAYLKKMPEQLWY 786 (824)
Q Consensus 707 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~ 786 (824)
.+.+..+++|+.|++++|.+... .....+++|++|++++|......+..++.+++|+.|++++|+.. .++. +..
T Consensus 258 -~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~-~~~ 331 (347)
T 4fmz_A 258 -INAVKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT-DIRP-LAS 331 (347)
T ss_dssp -CGGGTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC-CCGG-GGG
T ss_pred -ChhHhcCCCcCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc-cccC-hhh
Confidence 35788999999999999987763 34678899999999999754444555778999999999999854 4554 788
Q ss_pred CccCcEEEecCCc
Q 003387 787 IKSLNKFDCWWPQ 799 (824)
Q Consensus 787 l~~L~~L~l~~c~ 799 (824)
+++|+.|++++|+
T Consensus 332 l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 332 LSKMDSADFANQV 344 (347)
T ss_dssp CTTCSEESSSCC-
T ss_pred hhccceeehhhhc
Confidence 9999999999997
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=2.3e-24 Score=250.60 Aligned_cols=325 Identities=18% Similarity=0.097 Sum_probs=207.6
Q ss_pred CCCCeeEEEEEecCCCccccc-cc--CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCC-ccCCCCC
Q 003387 469 SPKKAKRLNAVEREGDFACLD-DY--DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYP-SGIENLF 544 (824)
Q Consensus 469 ~~~~~r~lsl~~~~~~~~~~~-~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp-~~i~~l~ 544 (824)
.+..++++.+. ++....++. .+ +++|++|.+.++... ...+..|..+++|++|+|++|.++.+| ..++.++
T Consensus 26 l~~~l~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (570)
T 2z63_A 26 LPFSTKNLDLS-FNPLRHLGSYSFFSFPELQVLDLSRCEIQ----TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (570)
T ss_dssp SCSSCCEEECC-SCCCCEECTTTTTTCSSCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred ccccccEEEcc-CCccCccChhHhhCCCCceEEECCCCcCC----ccCcccccCchhCCEEeCcCCcCCccCHhhhcCcc
Confidence 45567777777 444433332 33 777777777776542 244556677777777777777776544 5667777
Q ss_pred cceEEeecCCCCCccChhhhhcCCCccEeecCCccccc--cchhhhccccCceecCCCccCCCCCCC-CC----------
Q 003387 545 LLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDH--TADEFWKMNKLRHLNFGSITLPAHPGK-FC---------- 611 (824)
Q Consensus 545 ~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~L~~~~~~~~~~p-~i---------- 611 (824)
+|++|++++|.+..+|...++++++|++|++++|.+.. +|..++++++|++|++++|.+... .| .+
T Consensus 101 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~~~ 179 (570)
T 2z63_A 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-YCTDLRVLHQMPLLN 179 (570)
T ss_dssp TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE-CGGGGHHHHTCTTCC
T ss_pred ccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee-cHHHccchhccchhh
Confidence 77777777777776665223777777777777776654 566677777777777776654320 00 11
Q ss_pred --------------------------------------------------------------------------------
Q 003387 612 -------------------------------------------------------------------------------- 611 (824)
Q Consensus 612 -------------------------------------------------------------------------------- 611 (824)
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l 259 (570)
T 2z63_A 180 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259 (570)
T ss_dssp CEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEE
T ss_pred hhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccch
Confidence
Q ss_pred -------------------CCCCCCCeeeccCCC-cchhhhc--------------------------------------
Q 003387 612 -------------------GSLENLNFISALHPC-CCTEDIL-------------------------------------- 633 (824)
Q Consensus 612 -------------------~~L~~L~~l~~~~~~-~~~~~~l-------------------------------------- 633 (824)
+.+++|+.+++..+. ..++..+
T Consensus 260 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~ 339 (570)
T 2z63_A 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN 339 (570)
T ss_dssp EEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCC
T ss_pred hhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCcccc
Confidence 112222222222100 0000001
Q ss_pred ----CCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccC---------CCCCccEEEeCcc-----------Cc
Q 003387 634 ----GRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANES---------KMPRLSKIVLAEY-----------LF 689 (824)
Q Consensus 634 ----~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~---------~~~~L~~l~l~~~-----------~~ 689 (824)
..+++|+.|+++++.-......+..+..+++|++|++++|. .+++|+.|.+.++ ..
T Consensus 340 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 419 (570)
T 2z63_A 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419 (570)
T ss_dssp BCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTT
T ss_pred ccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhc
Confidence 12233333333333211111124455666777777777643 4567777777654 45
Q ss_pred CCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCccceeccCcccCccEE
Q 003387 690 PHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECL 769 (824)
Q Consensus 690 ~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L 769 (824)
+++|++|++++|.+.+..+..++.+++|+.|++++|.+.+..++..+..+++|++|++++|......+..+..+++|+.|
T Consensus 420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence 67888999988888777778888999999999998887754566777889999999999987443336678889999999
Q ss_pred EEecCCCCCCCccccccCccCcEEEecCCc
Q 003387 770 IINPCAYLKKMPEQLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 770 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 799 (824)
++++|......|..+.++++|+.|+++++|
T Consensus 500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred eCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 999997555445568899999999999965
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=3.5e-24 Score=255.67 Aligned_cols=294 Identities=14% Similarity=0.094 Sum_probs=233.2
Q ss_pred CCCeeEEEEEecCCCccccccc--CCceeEeeccCCC-CCCCCcchhHhhhc-------ccCcccEEEeeCccCccCCc-
Q 003387 470 PKKAKRLNAVEREGDFACLDDY--DSQLHSLLCCSPE-TRHLDPIDWEKFCG-------MFKLLRVLDLGSLVLIQYPS- 538 (824)
Q Consensus 470 ~~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~-~~~~~~~~~~~~~~-------~~~~Lr~L~L~~~~i~~lp~- 538 (824)
..+++.|.+..+.....+|..+ +++|+.|.+.++. .. ...++..+. .+++|++|+|++|.+..+|.
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ls---g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~ 566 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS---AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS 566 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSC---HHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcc---cccchHHHHhhhhcccccCCccEEEeeCCcCCccCCh
Confidence 4678999999555455577666 9999999999987 42 202344344 44599999999999999999
Q ss_pred -cCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhcccc-CceecCCCccCCCCCCC-CCCCCC
Q 003387 539 -GIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNK-LRHLNFGSITLPAHPGK-FCGSLE 615 (824)
Q Consensus 539 -~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~-L~~L~L~~~~~~~~~~p-~i~~L~ 615 (824)
.++++++|++|+|++|.+..+| .+ +++++|++|+|++|.+..+|..+.++++ |++|++++|.+. .+| .++.+.
T Consensus 567 ~~l~~L~~L~~L~Ls~N~l~~lp-~~-~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~--~lp~~~~~~~ 642 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNKVRHLE-AF-GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK--YIPNIFNAKS 642 (876)
T ss_dssp HHHTTCTTCCEEECTTSCCCBCC-CC-CTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC--SCCSCCCTTC
T ss_pred hhhhcCCCCCEEECCCCCcccch-hh-cCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC--cCchhhhccc
Confidence 9999999999999999999999 66 9999999999999999999999999999 999999999987 566 666665
Q ss_pred C--CCeeeccCCCc--chhh---hcC--CCCccceEEEecccccchhhHHHHh-ccCCCCCeEEEeccC---------C-
Q 003387 616 N--LNFISALHPCC--CTED---ILG--RLPNLRNLRIRGDLSYNQSLLSKSL-CRLSCLESLKLANES---------K- 675 (824)
Q Consensus 616 ~--L~~l~~~~~~~--~~~~---~l~--~l~~L~~L~l~~~~~~~~~~l~~~l-~~l~~L~~L~l~~~~---------~- 675 (824)
. |+.|+++.+.. .++. .+. .+++|+.|+++++. ...+|..+ ..+++|+.|+|++|. .
T Consensus 643 ~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~---L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~ 719 (876)
T 4ecn_A 643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE---IQKFPTELFATGSPISTIILSNNLMTSIPENSLKP 719 (876)
T ss_dssp SSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC---CCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSC
T ss_pred cCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc---CCccCHHHHccCCCCCEEECCCCcCCccChHHhcc
Confidence 4 99999884321 1111 022 34589999999885 23555554 478999999999853 1
Q ss_pred C-------CCccEEEeCcc---------C--cCCCceEEEEEcccCCCCCcccccCCCCCCeEEeec------cccCCCe
Q 003387 676 M-------PRLSKIVLAEY---------L--FPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQ------NSYSGRK 731 (824)
Q Consensus 676 ~-------~~L~~l~l~~~---------~--~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~------~~~~~~~ 731 (824)
. ++|+.|.++++ . .+++|+.|+|++|.+.+ +|..++++++|+.|+|++ |.+.+ .
T Consensus 720 ~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~-~ 797 (876)
T 4ecn_A 720 KDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILR-Q 797 (876)
T ss_dssp TTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCC-C
T ss_pred ccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccc-c
Confidence 1 17899998876 3 67999999999999876 788899999999999987 44443 3
Q ss_pred eeecCCCCCCccEEeeccCCCCccceeccCcccCccEEEEecCCCCC
Q 003387 732 LTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAYLK 778 (824)
Q Consensus 732 ~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~ 778 (824)
++..+..+++|+.|+|++|. +..+|..+. ++|+.|+|++|+...
T Consensus 798 ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 798 WPTGITTCPSLIQLQIGSND-IRKVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp CCTTGGGCSSCCEEECCSSC-CCBCCSCCC--SSSCEEECCSCTTCE
T ss_pred ChHHHhcCCCCCEEECCCCC-CCccCHhhc--CCCCEEECCCCCCCc
Confidence 55567789999999999997 488886643 799999999999653
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=7.1e-25 Score=257.22 Aligned_cols=292 Identities=17% Similarity=0.176 Sum_probs=193.0
Q ss_pred CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCcc-Cc--cCCccCCCC------CcceEEeecCCCCCccCh-
Q 003387 492 DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLV-LI--QYPSGIENL------FLLRYLKLNIPSLNSLPS- 561 (824)
Q Consensus 492 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~-i~--~lp~~i~~l------~~Lr~L~L~~~~i~~lp~- 561 (824)
+++|++|.+.++... ...+..+..+++|++|++++|. ++ .+|..++++ ++|++|++++|.+..+|.
T Consensus 248 l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~ 323 (636)
T 4eco_A 248 LKDLTDVEVYNCPNL----TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE 323 (636)
T ss_dssp CTTCCEEEEECCTTC----SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCH
T ss_pred cCCCCEEEecCCcCC----ccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCch
Confidence 466666666666542 1234556666677777777766 55 366666555 667777777776666666
Q ss_pred -hhhhcCCCccEeecCCcccc-ccchhhhccccCceecCCCccCCCCCCC-CCCCCCC-CCeeeccCCC-cchhhhcCCC
Q 003387 562 -SLLSNLLNLYTLDMPFSYID-HTADEFWKMNKLRHLNFGSITLPAHPGK-FCGSLEN-LNFISALHPC-CCTEDILGRL 636 (824)
Q Consensus 562 -~i~~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~L~~~~~~~~~~p-~i~~L~~-L~~l~~~~~~-~~~~~~l~~l 636 (824)
.+ +++++|++|++++|.+. .+| .++.+++|++|++++|.+. .+| .++++++ |+.|+++.+. ..++..+..+
T Consensus 324 ~~l-~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~ 399 (636)
T 4eco_A 324 TSL-QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAK 399 (636)
T ss_dssp HHH-TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE--ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTT
T ss_pred hhh-ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc--cccHhhhhhcccCcEEEccCCcCcccchhhhhc
Confidence 55 67777777777777666 666 6666777777777776665 455 6777777 7777776321 1223324443
Q ss_pred C--ccceEEEecccccchhhHHHHhc-------cCCCCCeEEEeccC----------CCCCccEEEeCcc-------Cc-
Q 003387 637 P--NLRNLRIRGDLSYNQSLLSKSLC-------RLSCLESLKLANES----------KMPRLSKIVLAEY-------LF- 689 (824)
Q Consensus 637 ~--~L~~L~l~~~~~~~~~~l~~~l~-------~l~~L~~L~l~~~~----------~~~~L~~l~l~~~-------~~- 689 (824)
+ +|+.|+++++. .....|..+. .+++|+.|++++|. ..++|+.|.+.++ ..
T Consensus 400 ~l~~L~~L~Ls~N~--l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 477 (636)
T 4eco_A 400 SVSVMSAIDFSYNE--IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL 477 (636)
T ss_dssp CSSCEEEEECCSSC--TTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSS
T ss_pred ccCccCEEECcCCc--CCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHh
Confidence 3 67777777764 3344444454 56677788877753 2466777777665 11
Q ss_pred ---------CCCceEEEEEcccCCCCCccccc--CCCCCCeEEeeccccCCCeeeecCCCCCCccEEeecc------CCC
Q 003387 690 ---------PHSLTHLSFSNTDLMDDPMPTLE--KLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKS------MLW 752 (824)
Q Consensus 690 ---------~~~L~~L~L~~~~l~~~~~~~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~------~~~ 752 (824)
+++|+.|+|++|.+. .+|..+. .+++|+.|+|++|.+.+ ++.....+++|++|+|++ |..
T Consensus 478 ~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l 554 (636)
T 4eco_A 478 KDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRT 554 (636)
T ss_dssp EETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBC
T ss_pred ccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC--cChhhhcCCCCCEEECCCCcccccCcc
Confidence 127888888888776 5666665 78888888888887775 556666788888888843 444
Q ss_pred CccceeccCcccCccEEEEecCCCCCCCccccccCccCcEEEecCCc
Q 003387 753 LEEWTMGNAAMPKLECLIINPCAYLKKMPEQLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 753 l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 799 (824)
...+|..++.+++|+.|++++|.. +.+|..+. ++|+.|++++||
T Consensus 555 ~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 555 LREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp CCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCT
T ss_pred cccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCC
Confidence 556676777788888888888875 77787654 788888888886
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=4e-24 Score=250.85 Aligned_cols=315 Identities=13% Similarity=0.099 Sum_probs=245.7
Q ss_pred CCCeeEEEEEecCCCccccccc--CCceeEeeccCCC-CCCCCcchhHhhhccc------CcccEEEeeCccCccCCc--
Q 003387 470 PKKAKRLNAVEREGDFACLDDY--DSQLHSLLCCSPE-TRHLDPIDWEKFCGMF------KLLRVLDLGSLVLIQYPS-- 538 (824)
Q Consensus 470 ~~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~-~~~~~~~~~~~~~~~~------~~Lr~L~L~~~~i~~lp~-- 538 (824)
..++++|.+..+.....+|..+ +++|++|.+.++. .. ...++..+..+ ++|++|++++|.++.+|.
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~---~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~ 324 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS---GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSC---HHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHH
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCc---cccchHHHHhhhccccCCCCCEEECCCCcCCccCchh
Confidence 4678999999555455577777 9999999999987 42 21344555554 999999999999999999
Q ss_pred cCCCCCcceEEeecCCCCC-ccChhhhhcCCCccEeecCCccccccchhhhcccc-CceecCCCccCCCCCCC-CCCCCC
Q 003387 539 GIENLFLLRYLKLNIPSLN-SLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNK-LRHLNFGSITLPAHPGK-FCGSLE 615 (824)
Q Consensus 539 ~i~~l~~Lr~L~L~~~~i~-~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~-L~~L~L~~~~~~~~~~p-~i~~L~ 615 (824)
.++++++|++|++++|.+. .+| .+ +++++|++|++++|.+..+|..++.+++ |++|++++|.+. .+| .++.++
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip-~~-~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~--~lp~~~~~~~ 400 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLP-AF-GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK--YIPNIFDAKS 400 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECC-CC-EEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS--SCCSCCCTTC
T ss_pred hhccCCCCCEEeCcCCcCccchh-hh-CCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc--ccchhhhhcc
Confidence 9999999999999999999 999 76 9999999999999999999999999999 999999999988 566 666655
Q ss_pred --CCCeeeccCCCc--chhhhcC-------CCCccceEEEecccccchhhHHHH-hccCCCCCeEEEeccC----C---C
Q 003387 616 --NLNFISALHPCC--CTEDILG-------RLPNLRNLRIRGDLSYNQSLLSKS-LCRLSCLESLKLANES----K---M 676 (824)
Q Consensus 616 --~L~~l~~~~~~~--~~~~~l~-------~l~~L~~L~l~~~~~~~~~~l~~~-l~~l~~L~~L~l~~~~----~---~ 676 (824)
+|+.|+++.+.. ..+..+. .+++|+.|+++++. ...+|.. +..+++|+.|++++|. + +
T Consensus 401 l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~---l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 477 (636)
T 4eco_A 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ---ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL 477 (636)
T ss_dssp SSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC---CCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSS
T ss_pred cCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc---cCcCCHHHHccCCCCCEEECCCCCCCCcCHHHh
Confidence 899999984321 1222255 67799999999985 2244443 4458999999999864 1 1
Q ss_pred ----------CCccEEEeCcc---------C--cCCCceEEEEEcccCCCCCcccccCCCCCCeEEeec------cccCC
Q 003387 677 ----------PRLSKIVLAEY---------L--FPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQ------NSYSG 729 (824)
Q Consensus 677 ----------~~L~~l~l~~~---------~--~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~------~~~~~ 729 (824)
++|+.|.++++ . .+++|+.|+|++|.+.+ +|..++++++|+.|+|++ |.+.+
T Consensus 478 ~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~ 556 (636)
T 4eco_A 478 KDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLR 556 (636)
T ss_dssp EETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCC
T ss_pred ccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccc
Confidence 17889988876 3 67899999999999886 788899999999999965 43443
Q ss_pred CeeeecCCCCCCccEEeeccCCCCccceeccCcccCccEEEEecCCCCCC-----Ccc---ccccCccCcEEEecCCc
Q 003387 730 RKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAYLKK-----MPE---QLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 730 ~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~-----lp~---~l~~l~~L~~L~l~~c~ 799 (824)
.++..+..+++|++|+|++|. +..+|..+. ++|+.|++++|+...- .|. ....+...+..++.+||
T Consensus 557 -~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~ 630 (636)
T 4eco_A 557 -EWPEGITLCPSLTQLQIGSND-IRKVNEKIT--PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCD 630 (636)
T ss_dssp -CCCTTGGGCSSCCEEECCSSC-CCBCCSCCC--TTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCG
T ss_pred -cChHHHhcCCCCCEEECCCCc-CCccCHhHh--CcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCc
Confidence 355567789999999999988 488886644 8999999999985431 121 12233344566888998
No 17
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=7e-24 Score=239.84 Aligned_cols=301 Identities=19% Similarity=0.172 Sum_probs=228.7
Q ss_pred CCeeEEEEEecCCCccccccc-CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCccCCCCCcceEE
Q 003387 471 KKAKRLNAVEREGDFACLDDY-DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYL 549 (824)
Q Consensus 471 ~~~r~lsl~~~~~~~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L 549 (824)
..++.+.+. +.....++... +++|++|.+.++.... .++ +..+++|++|++++|.+..+|. ++++++|++|
T Consensus 46 ~~l~~L~l~-~~~i~~l~~~~~l~~L~~L~Ls~n~l~~----~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 46 DQVTTLQAD-RLGIKSIDGVEYLNNLTQINFSNNQLTD----ITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGL 117 (466)
T ss_dssp HTCCEEECC-SSCCCCCTTGGGCTTCCEEECCSSCCCC----CGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred ccccEEecC-CCCCccCcchhhhcCCCEEECCCCccCC----chh--hhccccCCEEECCCCccccChh-hcCCCCCCEE
Confidence 467888887 55554455433 8899999998887642 222 7889999999999999887776 8889999999
Q ss_pred eecCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCceecCCCccCCCCCCCCCCCCCCCCeeeccCCC-cc
Q 003387 550 KLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKFCGSLENLNFISALHPC-CC 628 (824)
Q Consensus 550 ~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~-~~ 628 (824)
++++|.+..+|. + .++++|++|++++|.+..+|. ++.+++|++|++++ .+. .++.++++++|+.|+++.+. ..
T Consensus 118 ~L~~n~l~~~~~-~-~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~-~~~--~~~~~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 118 TLFNNQITDIDP-L-KNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGN-QVT--DLKPLANLTTLERLDISSNKVSD 191 (466)
T ss_dssp ECCSSCCCCCGG-G-TTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEE-SCC--CCGGGTTCTTCCEEECCSSCCCC
T ss_pred ECCCCCCCCChH-H-cCCCCCCEEECCCCccCCChh-hccCCcccEeecCC-ccc--CchhhccCCCCCEEECcCCcCCC
Confidence 999999988876 5 899999999999998888875 88899999998863 332 34468888999999988432 23
Q ss_pred hhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccC--------CCCCccEEEeCcc--------CcCCC
Q 003387 629 TEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANES--------KMPRLSKIVLAEY--------LFPHS 692 (824)
Q Consensus 629 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~--------~~~~L~~l~l~~~--------~~~~~ 692 (824)
+.. +..+++|+.|+++++.- ....+ +..+++|+.|++++|. .+++|+.|.+.++ ..+++
T Consensus 192 ~~~-l~~l~~L~~L~l~~n~l--~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~ 266 (466)
T 1o6v_A 192 ISV-LAKLTNLESLIATNNQI--SDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK 266 (466)
T ss_dssp CGG-GGGCTTCSEEECCSSCC--CCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTT
T ss_pred Chh-hccCCCCCEEEecCCcc--ccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCC
Confidence 344 78889999999998852 22222 6678899999998753 4567777777765 45678
Q ss_pred ceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCccceeccCcccCccEEEEe
Q 003387 693 LTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIIN 772 (824)
Q Consensus 693 L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~ 772 (824)
|+.|++++|.+.+..+ ++.+++|+.|++++|.+.+.. ....+++|+.|++++|. +..++. ...+++|+.|+++
T Consensus 267 L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 267 LTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS---PISNLKNLTYLTLYFNN-ISDISP-VSSLTKLQRLFFY 339 (466)
T ss_dssp CSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCG---GGGGCTTCSEEECCSSC-CSCCGG-GGGCTTCCEEECC
T ss_pred CCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCch---hhcCCCCCCEEECcCCc-CCCchh-hccCccCCEeECC
Confidence 8888888888764332 778888888888888776522 25678899999998886 444433 6688999999999
Q ss_pred cCCCCCCCccccccCccCcEEEecCCc
Q 003387 773 PCAYLKKMPEQLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 773 ~c~~l~~lp~~l~~l~~L~~L~l~~c~ 799 (824)
+|+ +..++ .+.++++|+.|++++|+
T Consensus 340 ~n~-l~~~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 340 NNK-VSDVS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp SSC-CCCCG-GGTTCTTCCEEECCSSC
T ss_pred CCc-cCCch-hhccCCCCCEEeCCCCc
Confidence 886 44454 67889999999999887
No 18
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=2.5e-23 Score=235.27 Aligned_cols=303 Identities=18% Similarity=0.177 Sum_probs=217.9
Q ss_pred CCCCeeEEEEEecCCCccccccc-CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCccCCCCCcce
Q 003387 469 SPKKAKRLNAVEREGDFACLDDY-DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPSGIENLFLLR 547 (824)
Q Consensus 469 ~~~~~r~lsl~~~~~~~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr 547 (824)
....+++|.+. ++....++... +++|+.|.+.++.... ..+ +..+++|++|++++|.++.+|. +.++++|+
T Consensus 66 ~l~~L~~L~Ls-~n~l~~~~~~~~l~~L~~L~l~~n~l~~----~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~ 137 (466)
T 1o6v_A 66 YLNNLTQINFS-NNQLTDITPLKNLTKLVDILMNNNQIAD----ITP--LANLTNLTGLTLFNNQITDIDP-LKNLTNLN 137 (466)
T ss_dssp GCTTCCEEECC-SSCCCCCGGGTTCTTCCEEECCSSCCCC----CGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCS
T ss_pred hhcCCCEEECC-CCccCCchhhhccccCCEEECCCCcccc----Chh--hcCCCCCCEEECCCCCCCCChH-HcCCCCCC
Confidence 45678999999 55555455533 9999999999887652 222 8999999999999999998876 89999999
Q ss_pred EEeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCceecCCCccCCCCCCCCCCCCCCCCeeeccCCC-
Q 003387 548 YLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKFCGSLENLNFISALHPC- 626 (824)
Q Consensus 548 ~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~- 626 (824)
+|++++|.+..+|. + +++++|++|+++ +.+..++. +.++++|++|++++|.+. .++.+..+++|+.|+++.+.
T Consensus 138 ~L~l~~n~l~~~~~-~-~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~l~--~~~~l~~l~~L~~L~l~~n~l 211 (466)
T 1o6v_A 138 RLELSSNTISDISA-L-SGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQI 211 (466)
T ss_dssp EEEEEEEEECCCGG-G-TTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCC
T ss_pred EEECCCCccCCChh-h-ccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCcCC--CChhhccCCCCCEEEecCCcc
Confidence 99999999888764 4 677777777764 33444443 666677777777666654 34455666666666666321
Q ss_pred cchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccC--------CCCCccEEEeCcc--------CcC
Q 003387 627 CCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANES--------KMPRLSKIVLAEY--------LFP 690 (824)
Q Consensus 627 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~--------~~~~L~~l~l~~~--------~~~ 690 (824)
..... ++.+++|+.|+++++.-.. + ..+..+++|+.|++++|. .+++|+.|.+.++ ..+
T Consensus 212 ~~~~~-~~~l~~L~~L~l~~n~l~~---~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l 286 (466)
T 1o6v_A 212 SDITP-LGILTNLDELSLNGNQLKD---I-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGL 286 (466)
T ss_dssp CCCGG-GGGCTTCCEEECCSSCCCC---C-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTC
T ss_pred ccccc-ccccCCCCEEECCCCCccc---c-hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCC
Confidence 12222 5556666666666653111 1 234556666666666542 3445666666554 567
Q ss_pred CCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCccceeccCcccCccEEE
Q 003387 691 HSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLI 770 (824)
Q Consensus 691 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~ 770 (824)
++|+.|++++|.+.+.. .++.+++|+.|++++|.+.+... ...+++|+.|++++|. +..++ .+..+++|+.|+
T Consensus 287 ~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~ 359 (466)
T 1o6v_A 287 TALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNK-VSDVS-SLANLTNINWLS 359 (466)
T ss_dssp TTCSEEECCSSCCSCCG--GGGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEE
T ss_pred CccCeEEcCCCcccCch--hhcCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCCc-cCCch-hhccCCCCCEEe
Confidence 89999999999886533 38899999999999998876322 5689999999999986 55554 577899999999
Q ss_pred EecCCCCCCCccccccCccCcEEEecCCc
Q 003387 771 INPCAYLKKMPEQLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 771 l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 799 (824)
+++|+.....| +..+++|+.|++++|+
T Consensus 360 l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 360 AGHNQISDLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp CCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred CCCCccCccch--hhcCCCCCEEeccCCc
Confidence 99998654444 7899999999999987
No 19
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=1.2e-23 Score=228.42 Aligned_cols=279 Identities=17% Similarity=0.178 Sum_probs=229.5
Q ss_pred CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCcc
Q 003387 492 DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLY 571 (824)
Q Consensus 492 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 571 (824)
++++++|.+.++.... + ..+..+++|++|++++|.++.+|. +..+++|++|++++|.+..+|. + .++++|+
T Consensus 43 l~~L~~L~l~~~~i~~-----~-~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~-~-~~l~~L~ 113 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS-----I-QGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISA-L-QNLTNLR 113 (347)
T ss_dssp HTTCSEEECCSSCCCC-----C-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G-TTCTTCS
T ss_pred cccccEEEEeCCcccc-----c-hhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchH-H-cCCCcCC
Confidence 8899999999887653 2 237889999999999999998887 8999999999999999999864 5 9999999
Q ss_pred EeecCCccccccchhhhccccCceecCCCccCCCCCCCCCCCCCCCCeeeccCCC-cchhhhcCCCCccceEEEeccccc
Q 003387 572 TLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKFCGSLENLNFISALHPC-CCTEDILGRLPNLRNLRIRGDLSY 650 (824)
Q Consensus 572 ~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~ 650 (824)
+|++++|.+..+|. +..+++|++|++++|.... .++.++.+++|+.+++..+. ..... +..+++|+.|+++++.-
T Consensus 114 ~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l- 189 (347)
T 4fmz_A 114 ELYLNEDNISDISP-LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQI- 189 (347)
T ss_dssp EEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCC-CCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCC-
T ss_pred EEECcCCcccCchh-hccCCceeEEECCCCCCcc-cccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcc-
Confidence 99999999999987 8999999999999996543 45578999999999998432 23333 78899999999998852
Q ss_pred chhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCC
Q 003387 651 NQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGR 730 (824)
Q Consensus 651 ~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~ 730 (824)
..++. +..+++|+.|+++++. +.... ....+++|++|++++|.+....+ +..+++|+.|++++|.+...
T Consensus 190 --~~~~~-~~~l~~L~~L~l~~n~----l~~~~--~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 258 (347)
T 4fmz_A 190 --EDISP-LASLTSLHYFTAYVNQ----ITDIT--PVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI 258 (347)
T ss_dssp --CCCGG-GGGCTTCCEEECCSSC----CCCCG--GGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred --ccccc-ccCCCccceeecccCC----CCCCc--hhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC
Confidence 22222 7788999999998762 33221 14678999999999999865433 88999999999999988762
Q ss_pred eeeecCCCCCCccEEeeccCCCCccceeccCcccCccEEEEecCCCCCCCccccccCccCcEEEecCCc
Q 003387 731 KLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAYLKKMPEQLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 731 ~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 799 (824)
.....+++|++|++++|. +..++ .+..+++|+.|++++|+.....|..+..+++|+.|++++|+
T Consensus 259 ---~~~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 259 ---NAVKDLTKLKMLNVGSNQ-ISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp ---GGGTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred ---hhHhcCCCcCEEEccCCc-cCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 346789999999999985 66664 46789999999999998766667788999999999999998
No 20
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=3.2e-24 Score=257.61 Aligned_cols=315 Identities=18% Similarity=0.113 Sum_probs=198.4
Q ss_pred CCCCeeEEEEEecCCCccccccc--CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCc-cCCccCCCCCc
Q 003387 469 SPKKAKRLNAVEREGDFACLDDY--DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLI-QYPSGIENLFL 545 (824)
Q Consensus 469 ~~~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~-~lp~~i~~l~~ 545 (824)
...+++++.+..+......+. + +++|+.|.+.++... ...+..+..+++|++|++++|.+. .+|.. .+++
T Consensus 198 ~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~----~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~ 270 (768)
T 3rgz_A 198 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS----GDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKS 270 (768)
T ss_dssp TCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCC----SCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTT
T ss_pred cCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCC----CcccHHHhcCCCCCEEECCCCcccCccCcc--ccCC
Confidence 345666777763322222333 4 677777777766543 234556666777777777766655 33332 5555
Q ss_pred ceEEeecCCCCC-ccChhhhhc-CCCccEeecCCcccc-ccchhhhccccCceecCCCccCCCCCCC--CCCCCCCCCee
Q 003387 546 LRYLKLNIPSLN-SLPSSLLSN-LLNLYTLDMPFSYID-HTADEFWKMNKLRHLNFGSITLPAHPGK--FCGSLENLNFI 620 (824)
Q Consensus 546 Lr~L~L~~~~i~-~lp~~i~~~-L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~L~~~~~~~~~~p--~i~~L~~L~~l 620 (824)
|++|++++|.+. .+|..+ .+ +++|++|++++|.+. .+|..++++++|++|++++|.+.+ .+| .++++++|+.|
T Consensus 271 L~~L~L~~n~l~~~ip~~~-~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~ip~~~l~~l~~L~~L 348 (768)
T 3rgz_A 271 LQYLSLAENKFTGEIPDFL-SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG-ELPMDTLLKMRGLKVL 348 (768)
T ss_dssp CCEEECCSSEEEESCCCCS-CTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEE-ECCHHHHTTCTTCCEE
T ss_pred CCEEECcCCccCCccCHHH-HhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccC-cCCHHHHhcCCCCCEE
Confidence 555665555555 455544 33 355555555555444 345555555555555555555432 233 25555555555
Q ss_pred eccCCCc--chhhhcCC---------------------------CCccceEEEecccccchhhHHHHhccCCCCCeEEEe
Q 003387 621 SALHPCC--CTEDILGR---------------------------LPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLA 671 (824)
Q Consensus 621 ~~~~~~~--~~~~~l~~---------------------------l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~ 671 (824)
+++.+.. .++..+.. +++|+.|+++++. ....+|..+.++++|+.|+++
T Consensus 349 ~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~--l~~~~p~~l~~l~~L~~L~Ls 426 (768)
T 3rgz_A 349 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG--FTGKIPPTLSNCSELVSLHLS 426 (768)
T ss_dssp ECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSE--EEEECCGGGGGCTTCCEEECC
T ss_pred eCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCc--cccccCHHHhcCCCCCEEECc
Confidence 5542211 11111333 3444455444442 222344445555555555555
Q ss_pred ccCCCCCccEEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCC
Q 003387 672 NESKMPRLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSML 751 (824)
Q Consensus 672 ~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 751 (824)
+| .+.......+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+. ++..+..+++|++|++++|.
T Consensus 427 ~N----~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~L~~N~ 501 (768)
T 3rgz_A 427 FN----YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE-IPSGLSNCTNLNWISLSNNR 501 (768)
T ss_dssp SS----EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC-CCGGGGGCTTCCEEECCSSC
T ss_pred CC----cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCc-CCHHHhcCCCCCEEEccCCc
Confidence 43 12222222235678999999999999888899999999999999998888763 45567789999999999998
Q ss_pred CCccceeccCcccCccEEEEecCCCCCCCccccccCccCcEEEecCCc
Q 003387 752 WLEEWTMGNAAMPKLECLIINPCAYLKKMPEQLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 752 ~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 799 (824)
....+|..++.+++|+.|++++|.....+|..+.++++|+.|++++|+
T Consensus 502 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred cCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 666788888899999999999999888899999999999999999876
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=1.9e-23 Score=244.87 Aligned_cols=273 Identities=18% Similarity=0.138 Sum_probs=182.6
Q ss_pred cccEEEeeCccCccCCcc-CCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCcccccc-chhhhccccCceecCC
Q 003387 522 LLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHT-ADEFWKMNKLRHLNFG 599 (824)
Q Consensus 522 ~Lr~L~L~~~~i~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~ 599 (824)
.|++|++++|.+..+|.. ++.+++|++|++++|.+..+|..+ +++++|++|++++|.+..+ |..+..+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGL-VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSC-CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhh-cccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 566666666666655443 677788888888888888888777 7888888888888877766 4457788888888888
Q ss_pred CccCCCCCCC-CCCCCCCCCeeeccCCCc-ch---hhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccC
Q 003387 600 SITLPAHPGK-FCGSLENLNFISALHPCC-CT---EDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANES 674 (824)
Q Consensus 600 ~~~~~~~~~p-~i~~L~~L~~l~~~~~~~-~~---~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~ 674 (824)
+|.+.....+ .++.+++|+.|+++.+.. .. ...+..+++|+.|+++++. .....+..+..+++|++|++++|.
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE--PLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS--CEEECTTTTTTCTTCSEEECTTCC
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc--CCcCCHHHhcCCccCCeEECCCCc
Confidence 8776542333 577888888888773221 11 2237778888888888774 333345567777888888887642
Q ss_pred -----------CCCCccEEEeCcc----------CcCCCceEEEEEcccCCCC---CcccccCCCCCCeEEeeccccCCC
Q 003387 675 -----------KMPRLSKIVLAEY----------LFPHSLTHLSFSNTDLMDD---PMPTLEKLPLLQVLKLKQNSYSGR 730 (824)
Q Consensus 675 -----------~~~~L~~l~l~~~----------~~~~~L~~L~L~~~~l~~~---~~~~l~~l~~L~~L~L~~~~~~~~ 730 (824)
..++|+.|.+.++ ..+++|++|++++|.+.+. .+..++.+++|+.|++++|.+.+
T Consensus 412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~- 490 (606)
T 3t6q_A 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS- 490 (606)
T ss_dssp EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE-
T ss_pred CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc-
Confidence 2345666666554 3356677777776665442 22346666777777777665543
Q ss_pred eeeecCCCCCCccEEeeccCCCCccceeccCcccCccEEEEecCCCCCCCccccccCccCcEEEecCCc
Q 003387 731 KLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAYLKKMPEQLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 731 ~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 799 (824)
..+..+..+++|++|++++|......+..+..+++| .|++++|......|..+..+++|+.|++++||
T Consensus 491 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred cChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 223345667777777777776444445566677777 77777777655556567788889999998876
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=1.9e-23 Score=242.22 Aligned_cols=124 Identities=17% Similarity=0.145 Sum_probs=88.8
Q ss_pred eEEEEEecCCCcccccccCCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccC-CccCCCCCcceEEeec
Q 003387 474 KRLNAVEREGDFACLDDYDSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLN 552 (824)
Q Consensus 474 r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~ 552 (824)
+++.+. +.....+|..+.++++.|.+.++.... ..+..|..+++|++|+|++|.++.+ |..++++++|++|+|+
T Consensus 34 ~~l~ls-~~~L~~ip~~~~~~L~~L~Ls~N~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 34 SMVDYS-NRNLTHVPKDLPPRTKALSLSQNSISE----LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp CEEECT-TSCCCSCCTTSCTTCCEEECCSSCCCC----CCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred cEEEcC-CCCCccCCCCCCCCcCEEECCCCCccc----cChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 566666 444444665556778888887776542 4456777788888888888887755 5667778888888888
Q ss_pred CCCCCccChhhhhcCCCccEeecCCccccccc--hhhhccccCceecCCCccCCC
Q 003387 553 IPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTA--DEFWKMNKLRHLNFGSITLPA 605 (824)
Q Consensus 553 ~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~L~~~~~~~ 605 (824)
+|.+..+|.. .+++|++|++++|.+..+| ..++++++|++|++++|.+..
T Consensus 109 ~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 109 HNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp TSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 8888877764 6788888888888777654 667788888888887777653
No 23
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=2e-23 Score=244.65 Aligned_cols=137 Identities=19% Similarity=0.101 Sum_probs=117.9
Q ss_pred CCcccccccCCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccC-CccCCCCCcceEEeecCCCCCcc-C
Q 003387 483 GDFACLDDYDSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLNSL-P 560 (824)
Q Consensus 483 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i~~l-p 560 (824)
....+|..+.+++++|.+.++... ...+..|..+++|++|+|++|.++.+ |..++++++|++|+|++|.+..+ |
T Consensus 22 ~l~~ip~~~~~~l~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p 97 (606)
T 3vq2_A 22 KLSKVPDDIPSSTKNIDLSFNPLK----ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP 97 (606)
T ss_dssp CCSSCCTTSCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCT
T ss_pred CcccCCCCCCCCcCEEECCCCCcC----EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccCh
Confidence 344466666889999999998764 35566899999999999999999866 66789999999999999999988 5
Q ss_pred hhhhhcCCCccEeecCCccccccc-hhhhccccCceecCCCccCCCCCCC-CCCCCCCCCeeeccC
Q 003387 561 SSLLSNLLNLYTLDMPFSYIDHTA-DEFWKMNKLRHLNFGSITLPAHPGK-FCGSLENLNFISALH 624 (824)
Q Consensus 561 ~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~~~~~~p-~i~~L~~L~~l~~~~ 624 (824)
..+ +++++|++|++++|.+..+| ..++++++|++|++++|.+....+| .++++++|++|+++.
T Consensus 98 ~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~ 162 (606)
T 3vq2_A 98 GSF-SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162 (606)
T ss_dssp TSS-TTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCS
T ss_pred hhc-CCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccC
Confidence 555 99999999999999999887 5699999999999999999765667 899999999998873
No 24
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=5.5e-23 Score=226.94 Aligned_cols=269 Identities=14% Similarity=0.129 Sum_probs=226.4
Q ss_pred ccCcccEEEeeCccCccCCcc-CCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccch-hhhccccCcee
Q 003387 519 MFKLLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTAD-EFWKMNKLRHL 596 (824)
Q Consensus 519 ~~~~Lr~L~L~~~~i~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L 596 (824)
.+++|++|+++++.++.+|.. +..+++|++|++++|.+..+|...++++++|++|++++|.+..+|. .++++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 468999999999999999886 5789999999999999999887545999999999999999998865 48999999999
Q ss_pred cCCCccCCCCCCC--CCCCCCCCCeeeccCC--CcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEec
Q 003387 597 NFGSITLPAHPGK--FCGSLENLNFISALHP--CCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLAN 672 (824)
Q Consensus 597 ~L~~~~~~~~~~p--~i~~L~~L~~l~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~ 672 (824)
++++|.+. .+| .++++++|+.|+++.+ ....+..+..+++|+.|+++++.-.. + .+..+++|+.|++++
T Consensus 123 ~L~~n~l~--~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---~--~~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 123 VLERNDLS--SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---V--DLSLIPSLFHANVSY 195 (390)
T ss_dssp ECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB---C--CGGGCTTCSEEECCS
T ss_pred ECCCCccC--cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc---c--ccccccccceeeccc
Confidence 99999987 555 4689999999999843 22333348899999999999885221 1 256789999999998
Q ss_pred cC-----CCCCccEEEeCcc-------CcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCC
Q 003387 673 ES-----KMPRLSKIVLAEY-------LFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFP 740 (824)
Q Consensus 673 ~~-----~~~~L~~l~l~~~-------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 740 (824)
|. .+++++.|.+.++ ..+++|+.|++++|.+.+ ++.++.+++|++|++++|.+.+ ..+..+..++
T Consensus 196 n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~ 272 (390)
T 3o6n_A 196 NLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK-IMYHPFVKMQ 272 (390)
T ss_dssp SCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE-EESGGGTTCS
T ss_pred ccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcc--cHHHcCCCCccEEECCCCcCCC-cChhHccccc
Confidence 64 4567888888876 346789999999999865 3688999999999999998765 3355678899
Q ss_pred CccEEeeccCCCCccceeccCcccCccEEEEecCCCCCCCccccccCccCcEEEecCCc
Q 003387 741 NLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAYLKKMPEQLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 741 ~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 799 (824)
+|++|++++|. +..++.....+|+|+.|++++|. +..+|..+..+++|+.|++++|+
T Consensus 273 ~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 273 RLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp SCCEEECCSSC-CCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC
T ss_pred cCCEEECCCCc-CcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCc
Confidence 99999999986 77788778889999999999996 56789888999999999999997
No 25
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=2.5e-23 Score=243.76 Aligned_cols=322 Identities=18% Similarity=0.069 Sum_probs=192.3
Q ss_pred CCCCeeEEEEEecCCCccc-cccc--CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCcc-CCccCCCCC
Q 003387 469 SPKKAKRLNAVEREGDFAC-LDDY--DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQ-YPSGIENLF 544 (824)
Q Consensus 469 ~~~~~r~lsl~~~~~~~~~-~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~-lp~~i~~l~ 544 (824)
.+..++++.+. ++....+ +..+ +++|++|.+.++... ...+..|..+++|++|+|++|.+.. .|..+++++
T Consensus 31 l~~~l~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 105 (606)
T 3t6q_A 31 LPNSTECLEFS-FNVLPTIQNTTFSRLINLTFLDLTRCQIY----WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK 105 (606)
T ss_dssp SCTTCCEEECT-TCCCSEECTTTSTTCTTCSEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCT
T ss_pred CCCcCcEEEcc-CCccCcCChhHhccCccceEEECCCCccc----eeChhhccCccccCeeeCCCCcccccChhhhcccc
Confidence 45567777777 4444334 3333 677777777766542 2445666777777777777777663 355677777
Q ss_pred cceEEeecCCCCCccChhhhhcCCCccEeecCCccccccc-hhhhccccCceecCCCccCCCCCCC-CCCCCCCCC--ee
Q 003387 545 LLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTA-DEFWKMNKLRHLNFGSITLPAHPGK-FCGSLENLN--FI 620 (824)
Q Consensus 545 ~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~~~~~~p-~i~~L~~L~--~l 620 (824)
+|++|++++|.+..+++..++++++|++|++++|.+..++ ..+..+++|++|++++|.+.. ..| .++.+++|+ .+
T Consensus 106 ~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~l~L 184 (606)
T 3t6q_A 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSL 184 (606)
T ss_dssp TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE-ECHHHHHTTTTCCSEEE
T ss_pred cccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccc-cChhhhhhhcccceeEE
Confidence 7777777777777663322377777777777777666652 223447777777777776652 223 556666666 45
Q ss_pred eccCCC--cchhhhcCCCCccce----------------------------------------------------EEEec
Q 003387 621 SALHPC--CCTEDILGRLPNLRN----------------------------------------------------LRIRG 646 (824)
Q Consensus 621 ~~~~~~--~~~~~~l~~l~~L~~----------------------------------------------------L~l~~ 646 (824)
+++.+. ...+. .....+|+. |++++
T Consensus 185 ~l~~n~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~ 263 (606)
T 3t6q_A 185 NLNGNDIAGIEPG-AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263 (606)
T ss_dssp ECTTCCCCEECTT-TTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTT
T ss_pred ecCCCccCccChh-HhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeec
Confidence 554211 11111 111222333 33333
Q ss_pred ccccchhhHHHHhccCCCCCeEEEeccC---------CCCCccEEEeCcc----------CcCCCceEEEEEcccCCCCC
Q 003387 647 DLSYNQSLLSKSLCRLSCLESLKLANES---------KMPRLSKIVLAEY----------LFPHSLTHLSFSNTDLMDDP 707 (824)
Q Consensus 647 ~~~~~~~~l~~~l~~l~~L~~L~l~~~~---------~~~~L~~l~l~~~----------~~~~~L~~L~L~~~~l~~~~ 707 (824)
+. .....+..+.++++|++|++++|. ..++|+.|.+.++ ..+++|++|++++|.+.+..
T Consensus 264 n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 341 (606)
T 3t6q_A 264 HY--FFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL 341 (606)
T ss_dssp CC--CSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBC
T ss_pred Cc--cCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccccc
Confidence 21 111122335566777777777642 2356666666654 34567777777777665444
Q ss_pred cc-cccCCCCCCeEEeeccccCCCee-eecCCCCCCccEEeeccCCCCccceeccCcccCccEEEEecCCCCCCCcc-cc
Q 003387 708 MP-TLEKLPLLQVLKLKQNSYSGRKL-TCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAYLKKMPE-QL 784 (824)
Q Consensus 708 ~~-~l~~l~~L~~L~L~~~~~~~~~~-~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~-~l 784 (824)
+. .++.+++|++|++++|.+.+... +.....+++|++|++++|......+..+..+++|+.|++++|......|. .+
T Consensus 342 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 421 (606)
T 3t6q_A 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421 (606)
T ss_dssp CSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTT
T ss_pred chhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhh
Confidence 33 36777777777777776654211 23456777888888887763333344566778888888888876554443 37
Q ss_pred ccCccCcEEEecCCc
Q 003387 785 WYIKSLNKFDCWWPQ 799 (824)
Q Consensus 785 ~~l~~L~~L~l~~c~ 799 (824)
.++++|+.|++++|.
T Consensus 422 ~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 422 QNLHLLKVLNLSHSL 436 (606)
T ss_dssp TTCTTCCEEECTTCC
T ss_pred hCcccCCEEECCCCc
Confidence 788888888888875
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=1.9e-23 Score=240.01 Aligned_cols=125 Identities=15% Similarity=0.110 Sum_probs=93.1
Q ss_pred CCCCeeEEEEEecCCCcccc-ccc--CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCccCCCCCc
Q 003387 469 SPKKAKRLNAVEREGDFACL-DDY--DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPSGIENLFL 545 (824)
Q Consensus 469 ~~~~~r~lsl~~~~~~~~~~-~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~ 545 (824)
.+.+++++.+. ++....++ ..+ +++|++|.+.++... ...+..|..+++|++|+|++|.++.+|.. .+++
T Consensus 19 ~~~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~ 91 (520)
T 2z7x_B 19 LSQKTTILNIS-QNYISELWTSDILSLSKLRILIISHNRIQ----YLDISVFKFNQELEYLDLSHNKLVKISCH--PTVN 91 (520)
T ss_dssp CCTTCSEEECC-SSCCCCCCHHHHTTCTTCCEEECCSSCCC----EEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCC
T ss_pred ccccccEEECC-CCcccccChhhccccccccEEecCCCccC----CcChHHhhcccCCCEEecCCCceeecCcc--ccCC
Confidence 34678888888 44444343 333 788888888887653 24566788888888888888888887776 7888
Q ss_pred ceEEeecCCCCCc--cChhhhhcCCCccEeecCCccccccchhhhccccC--ceecCCCccC
Q 003387 546 LRYLKLNIPSLNS--LPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKL--RHLNFGSITL 603 (824)
Q Consensus 546 Lr~L~L~~~~i~~--lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L--~~L~L~~~~~ 603 (824)
|++|++++|.+.. +|..+ +++++|++|++++|.+.. ..+..+++| ++|++++|.+
T Consensus 92 L~~L~L~~N~l~~~~~p~~~-~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 92 LKHLDLSFNAFDALPICKEF-GNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CSEEECCSSCCSSCCCCGGG-GGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred ccEEeccCCccccccchhhh-ccCCcceEEEecCcccch--hhccccccceeeEEEeecccc
Confidence 8888888888875 45666 888888888888887765 346777777 8888888776
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=5.9e-23 Score=231.75 Aligned_cols=304 Identities=13% Similarity=0.089 Sum_probs=239.1
Q ss_pred cccccCCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCc-cC-CccCCCCCcceEEeecCCCCCccC-hhh
Q 003387 487 CLDDYDSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLI-QY-PSGIENLFLLRYLKLNIPSLNSLP-SSL 563 (824)
Q Consensus 487 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~-~l-p~~i~~l~~Lr~L~L~~~~i~~lp-~~i 563 (824)
+|. +.+++++|.+.++... ...+..|..+++|++|+|++|.+. .+ |..+.++++|++|+|++|.+..++ ..+
T Consensus 25 lp~-l~~~l~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 99 (455)
T 3v47_A 25 VPE-LPAHVNYVDLSLNSIA----ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF 99 (455)
T ss_dssp CCC-CCTTCCEEECCSSCCC----EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTT
T ss_pred CCC-CCCccCEEEecCCccC----cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhc
Confidence 444 5689999999988764 345678899999999999999986 55 567899999999999999999774 455
Q ss_pred hhcCCCccEeecCCccccc-cchh--hhccccCceecCCCccCCCCCCC-C-CCCCCCCCeeeccCCC--cchhhhcCCC
Q 003387 564 LSNLLNLYTLDMPFSYIDH-TADE--FWKMNKLRHLNFGSITLPAHPGK-F-CGSLENLNFISALHPC--CCTEDILGRL 636 (824)
Q Consensus 564 ~~~L~~L~~L~L~~~~l~~-lp~~--i~~L~~L~~L~L~~~~~~~~~~p-~-i~~L~~L~~l~~~~~~--~~~~~~l~~l 636 (824)
+++++|++|++++|.+.. .|.. +.++++|++|++++|.+.. ..| . ++++++|+.|+++.+. ...+..+..+
T Consensus 100 -~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 177 (455)
T 3v47_A 100 -NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK-IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF 177 (455)
T ss_dssp -TTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCS-CCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGG
T ss_pred -cCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCc-cCcccccCCCCcccEEeCCCCcccccChhhhhcc
Confidence 999999999999998886 4554 8899999999999999875 334 3 8999999999998432 1122224444
Q ss_pred --CccceEEEecccccch------hhHHHHhccCCCCCeEEEeccC-------------CCCCccEEEeCccC-------
Q 003387 637 --PNLRNLRIRGDLSYNQ------SLLSKSLCRLSCLESLKLANES-------------KMPRLSKIVLAEYL------- 688 (824)
Q Consensus 637 --~~L~~L~l~~~~~~~~------~~l~~~l~~l~~L~~L~l~~~~-------------~~~~L~~l~l~~~~------- 688 (824)
.+|+.|+++++.-... ......+..+++|++|++++|. ..++++.+.+.++.
T Consensus 178 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 257 (455)
T 3v47_A 178 QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG 257 (455)
T ss_dssp TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT
T ss_pred ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc
Confidence 6788999888752111 1112234466889999999863 23688888887651
Q ss_pred ---------------cCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCC
Q 003387 689 ---------------FPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWL 753 (824)
Q Consensus 689 ---------------~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 753 (824)
.+++|+.|++++|.+.+..+..++.+++|+.|++++|.+.+ ..+..+..+++|++|++++|. +
T Consensus 258 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~-l 335 (455)
T 3v47_A 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK-IDDNAFWGLTHLLKLNLSQNF-L 335 (455)
T ss_dssp CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSC-C
T ss_pred hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc-cChhHhcCcccCCEEECCCCc-c
Confidence 23689999999999988888899999999999999998764 234456789999999999987 4
Q ss_pred ccc-eeccCcccCccEEEEecCCCCCCCccccccCccCcEEEecCCc
Q 003387 754 EEW-TMGNAAMPKLECLIINPCAYLKKMPEQLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 754 ~~l-~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 799 (824)
..+ +..++.+++|+.|++++|......|..+..+++|+.|++++|.
T Consensus 336 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp CEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 555 5567889999999999998655557789999999999999986
No 28
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=4.7e-23 Score=238.44 Aligned_cols=321 Identities=20% Similarity=0.139 Sum_probs=211.4
Q ss_pred CCCCeeEEEEEecCCCccc-cccc--CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCcc-CCCCC
Q 003387 469 SPKKAKRLNAVEREGDFAC-LDDY--DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPSG-IENLF 544 (824)
Q Consensus 469 ~~~~~r~lsl~~~~~~~~~-~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~-i~~l~ 544 (824)
.+..++++.+. ++....+ +..+ +++|++|.+.++... ...+..|..+++|++|+|++|.+..+|.. +++++
T Consensus 24 ~~~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 98 (549)
T 2z81_A 24 LTAAMKSLDLS-FNKITYIGHGDLRACANLQVLILKSSRIN----TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98 (549)
T ss_dssp CCTTCCEEECC-SSCCCEECSSTTSSCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred CCCCccEEECc-CCccCccChhhhhcCCcccEEECCCCCcC----ccChhhccccccCCEEECCCCccCccCHHHhccCC
Confidence 34678888888 4444434 3444 888999998887653 34556788888999999999888876654 88888
Q ss_pred cceEEeecCCCCCcc--ChhhhhcCCCccEeecCCcc-ccccc-hhhhccccCceecCCCccCCCCCCC-CCCCCCCCCe
Q 003387 545 LLRYLKLNIPSLNSL--PSSLLSNLLNLYTLDMPFSY-IDHTA-DEFWKMNKLRHLNFGSITLPAHPGK-FCGSLENLNF 619 (824)
Q Consensus 545 ~Lr~L~L~~~~i~~l--p~~i~~~L~~L~~L~L~~~~-l~~lp-~~i~~L~~L~~L~L~~~~~~~~~~p-~i~~L~~L~~ 619 (824)
+|++|++++|.+..+ |..+ +++++|++|++++|. +..+| ..+.++++|++|++++|.+.. ..| .++++++|+.
T Consensus 99 ~L~~L~Ls~n~l~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~ 176 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVTSLF-PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN-YQSQSLKSIRDIHH 176 (549)
T ss_dssp TCCEEECTTCCCSSSCSSCSC-TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE-ECTTTTTTCSEEEE
T ss_pred CCcEEECCCCcccccchhhhh-hccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc-cChhhhhccccCce
Confidence 999999998888743 5556 888899999998885 77776 468888888888888887764 233 5655555444
Q ss_pred eeccCCC--cchhhhcCCCCccceEEEeccccc-----------------------------------------------
Q 003387 620 ISALHPC--CCTEDILGRLPNLRNLRIRGDLSY----------------------------------------------- 650 (824)
Q Consensus 620 l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~----------------------------------------------- 650 (824)
|++..+. ......+..+++|+.|+++++.-.
T Consensus 177 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l 256 (549)
T 2z81_A 177 LTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256 (549)
T ss_dssp EEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEE
T ss_pred EecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccc
Confidence 4443110 000000111222222222221100
Q ss_pred ----------------------------------------------------------------chhhHHHHh-ccCCCC
Q 003387 651 ----------------------------------------------------------------NQSLLSKSL-CRLSCL 665 (824)
Q Consensus 651 ----------------------------------------------------------------~~~~l~~~l-~~l~~L 665 (824)
....+|..+ ..+++|
T Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L 336 (549)
T 2z81_A 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSL 336 (549)
T ss_dssp EEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTC
T ss_pred ccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccc
Confidence 001123333 356777
Q ss_pred CeEEEeccC-------------CCCCccEEEeCcc------------CcCCCceEEEEEcccCCCCCcccccCCCCCCeE
Q 003387 666 ESLKLANES-------------KMPRLSKIVLAEY------------LFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVL 720 (824)
Q Consensus 666 ~~L~l~~~~-------------~~~~L~~l~l~~~------------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L 720 (824)
+.|++++|. ..++|+.|.++++ ..+++|+.|++++|.+. .+|..++.+++|+.|
T Consensus 337 ~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L 415 (549)
T 2z81_A 337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFL 415 (549)
T ss_dssp CEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEE
T ss_pred cEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEE
Confidence 777777642 2356777777654 34677888888888775 556667777777777
Q ss_pred EeeccccCCCe--e--------------eecCCCCCCccEEeeccCCCCccceeccCcccCccEEEEecCCCCCCCcccc
Q 003387 721 KLKQNSYSGRK--L--------------TCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAYLKKMPEQL 784 (824)
Q Consensus 721 ~L~~~~~~~~~--~--------------~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~~l 784 (824)
++++|.+..-. + ......+++|++|++++|. ++.+|. ...+++|+.|++++|......|..+
T Consensus 416 ~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~-l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~ 493 (549)
T 2z81_A 416 NLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNK-LKTLPD-ASLFPVLLVMKISRNQLKSVPDGIF 493 (549)
T ss_dssp ECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSC-CSSCCC-GGGCTTCCEEECCSSCCCCCCTTGG
T ss_pred ECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCc-cCcCCC-cccCccCCEEecCCCccCCcCHHHH
Confidence 77777654210 0 0012367888888888875 667775 4578999999999997655455568
Q ss_pred ccCccCcEEEecCCc
Q 003387 785 WYIKSLNKFDCWWPQ 799 (824)
Q Consensus 785 ~~l~~L~~L~l~~c~ 799 (824)
..+++|+.|++++||
T Consensus 494 ~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 494 DRLTSLQKIWLHTNP 508 (549)
T ss_dssp GGCTTCCEEECCSSC
T ss_pred hcCcccCEEEecCCC
Confidence 999999999998887
No 29
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=7.9e-23 Score=236.53 Aligned_cols=306 Identities=17% Similarity=0.128 Sum_probs=226.6
Q ss_pred CcccccccCCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCC-ccCCCCCcceEEeecCCCCCccChh
Q 003387 484 DFACLDDYDSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLNSLPSS 562 (824)
Q Consensus 484 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~ 562 (824)
...+|..+.+++++|.+.++... ...+..|..+++|++|+|++|.+..+| ..++++++|++|++++|.+..+|+.
T Consensus 17 l~~ip~~~~~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 92 (549)
T 2z81_A 17 FTSIPSGLTAAMKSLDLSFNKIT----YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS 92 (549)
T ss_dssp CSSCCSCCCTTCCEEECCSSCCC----EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHH
T ss_pred cccccccCCCCccEEECcCCccC----ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHH
Confidence 33466655789999999998764 244567899999999999999998555 6799999999999999999999988
Q ss_pred hhhcCCCccEeecCCcccccc--chhhhccccCceecCCCccCCCCCCC-CCCCCCCCCeeeccCCC--cchhhhcCCCC
Q 003387 563 LLSNLLNLYTLDMPFSYIDHT--ADEFWKMNKLRHLNFGSITLPAHPGK-FCGSLENLNFISALHPC--CCTEDILGRLP 637 (824)
Q Consensus 563 i~~~L~~L~~L~L~~~~l~~l--p~~i~~L~~L~~L~L~~~~~~~~~~p-~i~~L~~L~~l~~~~~~--~~~~~~l~~l~ 637 (824)
.++++++|++|++++|.+..+ |..++++++|++|++++|.......+ .++++++|++|++..+. ...+..++.++
T Consensus 93 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 172 (549)
T 2z81_A 93 WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR 172 (549)
T ss_dssp HHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred HhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccc
Confidence 559999999999999988854 67799999999999999985432333 78999999999998322 22333488999
Q ss_pred ccceEEEecccccchhhHHHH-hccCCCCCeEEEeccC-------------CCCCccEEEeCcc--------------Cc
Q 003387 638 NLRNLRIRGDLSYNQSLLSKS-LCRLSCLESLKLANES-------------KMPRLSKIVLAEY--------------LF 689 (824)
Q Consensus 638 ~L~~L~l~~~~~~~~~~l~~~-l~~l~~L~~L~l~~~~-------------~~~~L~~l~l~~~--------------~~ 689 (824)
+|+.|+++.+. ...++.. +..+++|+.|++++|. ..++++.+.+.+. ..
T Consensus 173 ~L~~L~l~~n~---~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~ 249 (549)
T 2z81_A 173 DIHHLTLHLSE---SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRY 249 (549)
T ss_dssp EEEEEEEECSB---STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGG
T ss_pred cCceEecccCc---ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhh
Confidence 99999999885 2334443 3567889999998753 1234444444322 01
Q ss_pred -----------------------------------------------------------CCCceEEEEEcccCCCCCccc
Q 003387 690 -----------------------------------------------------------PHSLTHLSFSNTDLMDDPMPT 710 (824)
Q Consensus 690 -----------------------------------------------------------~~~L~~L~L~~~~l~~~~~~~ 710 (824)
+++|+.|++++|.+. .+|..
T Consensus 250 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~ 328 (549)
T 2z81_A 250 ILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCS 328 (549)
T ss_dssp CTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHH
T ss_pred hccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHH
Confidence 134566666666553 33444
Q ss_pred c-cCCCCCCeEEeeccccCCCee--eecCCCCCCccEEeeccCCCCccce---eccCcccCccEEEEecCCCCCCCcccc
Q 003387 711 L-EKLPLLQVLKLKQNSYSGRKL--TCGSYGFPNLKVLHLKSMLWLEEWT---MGNAAMPKLECLIINPCAYLKKMPEQL 784 (824)
Q Consensus 711 l-~~l~~L~~L~L~~~~~~~~~~--~~~~~~~~~L~~L~L~~~~~l~~l~---~~~~~lp~L~~L~l~~c~~l~~lp~~l 784 (824)
+ +.+++|+.|++++|.+.+... ....+.+++|++|++++|. ++.++ ..+..+++|+.|++++|. ++.+|..+
T Consensus 329 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~ 406 (549)
T 2z81_A 329 FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSC 406 (549)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCC
T ss_pred HHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCCC-CccCChhh
Confidence 3 468889999998887765221 1235678899999999876 55554 236778899999999885 55788888
Q ss_pred ccCccCcEEEecCCc
Q 003387 785 WYIKSLNKFDCWWPQ 799 (824)
Q Consensus 785 ~~l~~L~~L~l~~c~ 799 (824)
..+++|+.|++++|.
T Consensus 407 ~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 407 QWPEKMRFLNLSSTG 421 (549)
T ss_dssp CCCTTCCEEECTTSC
T ss_pred cccccccEEECCCCC
Confidence 888888888888876
No 30
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=2.5e-22 Score=230.62 Aligned_cols=306 Identities=19% Similarity=0.164 Sum_probs=198.7
Q ss_pred eEEEEEecCCCcccccccCCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccC-CccCCCCCcceEEeec
Q 003387 474 KRLNAVEREGDFACLDDYDSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLN 552 (824)
Q Consensus 474 r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~ 552 (824)
+++.+. ++....+|..+.++++.|.+.++... ...+..|..+++|++|+|++|.++.+ |..++++++|++|+|+
T Consensus 3 ~~l~ls-~n~l~~ip~~~~~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRS-KNGLIHVPKDLSQKTTILNISQNYIS----ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECT-TSCCSSCCCSCCTTCSEEECCSSCCC----CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC
T ss_pred ceEecC-CCCcccccccccccccEEECCCCccc----ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC
Confidence 345555 44444566655789999999998764 24567889999999999999999865 7789999999999999
Q ss_pred CCCCCccChhhhhcCCCccEeecCCccccc--cchhhhccccCceecCCCccCCCCCCCCCCCCCCC--CeeeccCCCc-
Q 003387 553 IPSLNSLPSSLLSNLLNLYTLDMPFSYIDH--TADEFWKMNKLRHLNFGSITLPAHPGKFCGSLENL--NFISALHPCC- 627 (824)
Q Consensus 553 ~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~L~~~~~~~~~~p~i~~L~~L--~~l~~~~~~~- 627 (824)
+|.++.+|.. .+++|++|++++|.+.. +|..++++++|++|++++|.+... .++.+++| +.+++..+..
T Consensus 78 ~N~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 78 HNKLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLLVLGETY 151 (520)
T ss_dssp SSCCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEEEECTTT
T ss_pred CCceeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hccccccceeeEEEeeccccc
Confidence 9999999875 79999999999998876 578899999999999999887532 22222222 3333321000
Q ss_pred ----c--------------------------------------------------------hhhhcCCCC----------
Q 003387 628 ----C--------------------------------------------------------TEDILGRLP---------- 637 (824)
Q Consensus 628 ----~--------------------------------------------------------~~~~l~~l~---------- 637 (824)
. ++. ++.++
T Consensus 152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~ 230 (520)
T 2z7x_B 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAK-LQTNPKLSNLTLNNI 230 (520)
T ss_dssp TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHG-GGGCTTCCEEEEEEE
T ss_pred ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhh-hccccchhhcccccc
Confidence 0 000 11112
Q ss_pred -----------------ccceEEEecccccchhhHHHHh-----------------------------------------
Q 003387 638 -----------------NLRNLRIRGDLSYNQSLLSKSL----------------------------------------- 659 (824)
Q Consensus 638 -----------------~L~~L~l~~~~~~~~~~l~~~l----------------------------------------- 659 (824)
+|+.|+++++. ..+.+|..+
T Consensus 231 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~--l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~ 308 (520)
T 2z7x_B 231 ETTWNSFIRILQLVWHTTVWYFSISNVK--LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFT 308 (520)
T ss_dssp EEEHHHHHHHHHHHHTSSCSEEEEEEEE--EESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEE
T ss_pred ccCHHHHHHHHHHhhhCcccEEEeeccc--ccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEE
Confidence 33333333332 000111111
Q ss_pred ------------ccCCCCCeEEEeccC----------CCCCccEEEeCcc------------CcCCCceEEEEEcccCCC
Q 003387 660 ------------CRLSCLESLKLANES----------KMPRLSKIVLAEY------------LFPHSLTHLSFSNTDLMD 705 (824)
Q Consensus 660 ------------~~l~~L~~L~l~~~~----------~~~~L~~l~l~~~------------~~~~~L~~L~L~~~~l~~ 705 (824)
..+++|++|++++|. ..++|+.|.+.++ ..+++|++|++++|.+.+
T Consensus 309 l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 388 (520)
T 2z7x_B 309 VSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388 (520)
T ss_dssp EESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC
T ss_pred cCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc
Confidence 344555555555432 2334555554433 234556666666665544
Q ss_pred CCcc-cccCCCCCCeEEeeccccCCCeeeecCCCC-CCccEEeeccCCCCccceeccCcccCccEEEEecCCCCCCCccc
Q 003387 706 DPMP-TLEKLPLLQVLKLKQNSYSGRKLTCGSYGF-PNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAYLKKMPEQ 783 (824)
Q Consensus 706 ~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~~ 783 (824)
..+. .+..+++|+.|++++|.+.+.. + ..+ ++|++|++++|. +..+|.....+++|+.|++++|. ++.+|..
T Consensus 389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~-~---~~l~~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~ 462 (520)
T 2z7x_B 389 DEKKGDCSWTKSLLSLNMSSNILTDTI-F---RCLPPRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQ-LKSVPDG 462 (520)
T ss_dssp CGGGCSCCCCTTCCEEECCSSCCCGGG-G---GSCCTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC-CCCCCTT
T ss_pred ccccchhccCccCCEEECcCCCCCcch-h---hhhcccCCEEECCCCc-ccccchhhhcCCCCCEEECCCCc-CCccCHH
Confidence 2332 2555566666666655554311 1 122 688888888875 66788777789999999999996 5578876
Q ss_pred -cccCccCcEEEecCCc
Q 003387 784 -LWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 784 -l~~l~~L~~L~l~~c~ 799 (824)
+..+++|+.|+++++|
T Consensus 463 ~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 463 IFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp TTTTCTTCCEEECCSSC
T ss_pred HhccCCcccEEECcCCC
Confidence 8899999999999877
No 31
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=5.2e-23 Score=239.26 Aligned_cols=136 Identities=18% Similarity=0.126 Sum_probs=116.5
Q ss_pred cccccccCCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCC-ccCCCCCcceEEeecCCCCCccChhh
Q 003387 485 FACLDDYDSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLNSLPSSL 563 (824)
Q Consensus 485 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i 563 (824)
..+|..+.+.+++|.+.++... ...+..|..+++|++|+|++|.++.+| ..++++++|++|+|++|.+..+|+..
T Consensus 20 ~~ip~~l~~~l~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (570)
T 2z63_A 20 YKIPDNLPFSTKNLDLSFNPLR----HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (570)
T ss_dssp SSCCSSSCSSCCEEECCSCCCC----EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred cccCCCccccccEEEccCCccC----ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhh
Confidence 3456555778999999988764 244567899999999999999998664 56899999999999999999888655
Q ss_pred hhcCCCccEeecCCccccccch-hhhccccCceecCCCccCCCCCCC-CCCCCCCCCeeeccC
Q 003387 564 LSNLLNLYTLDMPFSYIDHTAD-EFWKMNKLRHLNFGSITLPAHPGK-FCGSLENLNFISALH 624 (824)
Q Consensus 564 ~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~~~p-~i~~L~~L~~l~~~~ 624 (824)
|+++++|++|++++|.+..+|. .++++++|++|++++|.+....+| .++++++|+.|+++.
T Consensus 96 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~ 158 (570)
T 2z63_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158 (570)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTT
T ss_pred hcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcC
Confidence 5999999999999999999876 599999999999999998755567 899999999998873
No 32
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=6.6e-23 Score=220.14 Aligned_cols=232 Identities=21% Similarity=0.174 Sum_probs=186.0
Q ss_pred ccCcccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCceecC
Q 003387 519 MFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNF 598 (824)
Q Consensus 519 ~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L 598 (824)
....+++|+|+++.++.+|..++++++|++|+|++|.+..+|..+ +++++|++|+|++|.+..+|..++++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 357899999999999999999999999999999999999999988 9999999999999999999999999999999999
Q ss_pred CCccCCCCCCC-CCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCC
Q 003387 599 GSITLPAHPGK-FCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMP 677 (824)
Q Consensus 599 ~~~~~~~~~~p-~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~ 677 (824)
++|.... .+| .++.. . ....+..+++|+.|+++++. ...+|..+
T Consensus 158 ~~n~~~~-~~p~~~~~~------~-------~~~~~~~l~~L~~L~L~~n~---l~~lp~~l------------------ 202 (328)
T 4fcg_A 158 RACPELT-ELPEPLAST------D-------ASGEHQGLVNLQSLRLEWTG---IRSLPASI------------------ 202 (328)
T ss_dssp EEETTCC-CCCSCSEEE------C--------CCCEEESTTCCEEEEEEEC---CCCCCGGG------------------
T ss_pred CCCCCcc-ccChhHhhc------c-------chhhhccCCCCCEEECcCCC---cCcchHhh------------------
Confidence 9987653 333 22210 0 00114456666666666652 11222222
Q ss_pred CccEEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCccce
Q 003387 678 RLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWT 757 (824)
Q Consensus 678 ~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~ 757 (824)
..+++|++|+|++|.+. ..+..++.+++|+.|++++|.+.+ .++..++.+++|++|+|++|.....+|
T Consensus 203 ----------~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~~p 270 (328)
T 4fcg_A 203 ----------ANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALR-NYPPIFGGRAPLKRLILKDCSNLLTLP 270 (328)
T ss_dssp ----------GGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCC-BCCCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred ----------cCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchh-hhHHHhcCCCCCCEEECCCCCchhhcc
Confidence 34566777777777765 356678889999999999888766 355667889999999999998888888
Q ss_pred eccCcccCccEEEEecCCCCCCCccccccCccCcEEEecCC
Q 003387 758 MGNAAMPKLECLIINPCAYLKKMPEQLWYIKSLNKFDCWWP 798 (824)
Q Consensus 758 ~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 798 (824)
..++.+++|+.|++++|+.++.+|..+.++++|+.+.+...
T Consensus 271 ~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 88899999999999999999999999999999999987653
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1.1e-22 Score=237.32 Aligned_cols=269 Identities=14% Similarity=0.123 Sum_probs=227.1
Q ss_pred ccCcccEEEeeCccCccCCcc-CCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchh-hhccccCcee
Q 003387 519 MFKLLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADE-FWKMNKLRHL 596 (824)
Q Consensus 519 ~~~~Lr~L~L~~~~i~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L 596 (824)
.++++++|+++++.+..+|.. +..+++|++|+|++|.+..+|+..|+.+++|++|+|++|.+..+|.. ++++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 467899999999999988876 57799999999999999988874449999999999999999988765 7999999999
Q ss_pred cCCCccCCCCCCC--CCCCCCCCCeeeccCC--CcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEec
Q 003387 597 NFGSITLPAHPGK--FCGSLENLNFISALHP--CCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLAN 672 (824)
Q Consensus 597 ~L~~~~~~~~~~p--~i~~L~~L~~l~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~ 672 (824)
++++|.+. .+| .++++++|+.|+++.+ ....+..++.+++|+.|+++++.-. .+ .+..+++|+.|++++
T Consensus 129 ~L~~n~l~--~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~---~~--~~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 129 VLERNDLS--SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT---HV--DLSLIPSLFHANVSY 201 (597)
T ss_dssp ECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS---BC--CGGGCTTCSEEECCS
T ss_pred EeeCCCCC--CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC---Cc--Chhhhhhhhhhhccc
Confidence 99999987 455 4699999999999843 2233434889999999999988521 12 256788999999998
Q ss_pred cC-----CCCCccEEEeCcc-------CcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCC
Q 003387 673 ES-----KMPRLSKIVLAEY-------LFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFP 740 (824)
Q Consensus 673 ~~-----~~~~L~~l~l~~~-------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 740 (824)
|. .+++|+.|.+.++ ..+++|+.|+|++|.+.+ +..++.+++|+.|+|++|.+.+ ..+..++.++
T Consensus 202 n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~ 278 (597)
T 3oja_B 202 NLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK-IMYHPFVKMQ 278 (597)
T ss_dssp SCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE-EESGGGTTCS
T ss_pred CccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC-CCHHHhcCcc
Confidence 64 5668889988876 345789999999999865 5788999999999999998875 3455678899
Q ss_pred CccEEeeccCCCCccceeccCcccCccEEEEecCCCCCCCccccccCccCcEEEecCCc
Q 003387 741 NLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAYLKKMPEQLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 741 ~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 799 (824)
+|++|+|++|. +..++.....+|+|+.|++++|+. ..+|..+..+++|+.|++++|+
T Consensus 279 ~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 279 RLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp SCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSCC-CCCGGGHHHHTTCSEEECCSSC
T ss_pred CCCEEECCCCC-CCCCCcccccCCCCcEEECCCCCC-CccCcccccCCCCCEEECCCCC
Confidence 99999999976 777888888899999999999975 5799889999999999999997
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=5.5e-22 Score=222.63 Aligned_cols=290 Identities=17% Similarity=0.082 Sum_probs=172.9
Q ss_pred CCeeEEEEEecCCCccccccc-CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCccCCCCCcceEE
Q 003387 471 KKAKRLNAVEREGDFACLDDY-DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYL 549 (824)
Q Consensus 471 ~~~r~lsl~~~~~~~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L 549 (824)
..++++.+. ++....++... +++|+.|.+.++.... . .+..+++|++|++++|.++.+| ++++++|++|
T Consensus 42 ~~L~~L~Ls-~n~l~~~~~l~~l~~L~~L~Ls~n~l~~----~---~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 42 ATLTSLDCH-NSSITDMTGIEKLTGLTKLICTSNNITT----L---DLSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp TTCCEEECC-SSCCCCCTTGGGCTTCSEEECCSSCCSC----C---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred CCCCEEEcc-CCCcccChhhcccCCCCEEEccCCcCCe----E---ccccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence 455666666 33333343212 6666666666665432 1 1556666666666666666554 6666666666
Q ss_pred eecCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCceecCCCccCCCCCCCCCCCCCCCCeeeccCCCcch
Q 003387 550 KLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKFCGSLENLNFISALHPCCCT 629 (824)
Q Consensus 550 ~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~ 629 (824)
++++|.+..+| + +++++|++|++++|.++.+| ++.+++|++|++++|.... .+ .++.+++|+.|+++.+.-.-
T Consensus 112 ~L~~N~l~~l~--~-~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~-~~-~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 112 NCDTNKLTKLD--V-SQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKIT-KL-DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp ECCSSCCSCCC--C-TTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCC-CC-CCTTCTTCCEEECCSSCCCC
T ss_pred ECCCCcCCeec--C-CCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccc-cc-ccccCCcCCEEECCCCccce
Confidence 66666666664 4 66666666666666666654 5666666666666664322 11 45566666666666322111
Q ss_pred hhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCccCcCCCceEEEEEcccCCCCCcc
Q 003387 630 EDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMP 709 (824)
Q Consensus 630 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~ 709 (824)
.. +..+++|+.|+++++.-. .+ .+..+++|+.|++++| +++.+. ...+++|+.|++++|.+.+..+
T Consensus 185 l~-l~~l~~L~~L~l~~N~l~---~~--~l~~l~~L~~L~Ls~N----~l~~ip---~~~l~~L~~L~l~~N~l~~~~~- 250 (457)
T 3bz5_A 185 LD-VSQNKLLNRLNCDTNNIT---KL--DLNQNIQLTFLDCSSN----KLTEID---VTPLTQLTYFDCSVNPLTELDV- 250 (457)
T ss_dssp CC-CTTCTTCCEEECCSSCCS---CC--CCTTCTTCSEEECCSS----CCSCCC---CTTCTTCSEEECCSSCCSCCCC-
T ss_pred ec-cccCCCCCEEECcCCcCC---ee--ccccCCCCCEEECcCC----cccccC---ccccCCCCEEEeeCCcCCCcCH-
Confidence 22 556666666666665311 11 2556666667766655 233322 3556788888888887766443
Q ss_pred cccCCCCCCeE----------EeeccccCCCeeeecCCCCCCccEEeeccCCCCccceec--------cCcccCccEEEE
Q 003387 710 TLEKLPLLQVL----------KLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMG--------NAAMPKLECLII 771 (824)
Q Consensus 710 ~l~~l~~L~~L----------~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~--------~~~lp~L~~L~l 771 (824)
+.+++|+.| ++++|.+.+ .++ .+.+++|+.|++++|..+..+|.. +..+|+|+.|++
T Consensus 251 --~~l~~L~~L~l~~n~L~~L~l~~n~~~~-~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L 325 (457)
T 3bz5_A 251 --STLSKLTTLHCIQTDLLEIDLTHNTQLI-YFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYL 325 (457)
T ss_dssp --TTCTTCCEEECTTCCCSCCCCTTCTTCC-EEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC
T ss_pred --HHCCCCCEEeccCCCCCEEECCCCccCC-ccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEEC
Confidence 344444444 444443333 122 466788999999888777666532 445677888888
Q ss_pred ecCCCCCCCccccccCccCcEEEecCCc
Q 003387 772 NPCAYLKKMPEQLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 772 ~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 799 (824)
++|.. +.++ +.++++|+.|+++++.
T Consensus 326 ~~N~l-~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 326 NNTEL-TELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp TTCCC-SCCC--CTTCTTCSEEECCSSC
T ss_pred CCCcc-cccc--cccCCcCcEEECCCCC
Confidence 87764 3454 7788999999988775
No 35
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=3.6e-22 Score=237.21 Aligned_cols=317 Identities=18% Similarity=0.104 Sum_probs=155.3
Q ss_pred CCCeeEEEEEecCCCccccc-cc--CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCc-cCCCCCc
Q 003387 470 PKKAKRLNAVEREGDFACLD-DY--DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPS-GIENLFL 545 (824)
Q Consensus 470 ~~~~r~lsl~~~~~~~~~~~-~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~-~i~~l~~ 545 (824)
+.++++|.+. ++....++. .+ +++|++|.+.++... ...+..|..+++|++|+|++|.++.+|. .++++++
T Consensus 24 ~~~l~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 98 (680)
T 1ziw_A 24 PTNITVLNLT-HNQLRRLPAANFTRYSQLTSLDVGFNTIS----KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98 (680)
T ss_dssp CTTCSEEECC-SSCCCCCCGGGGGGGTTCSEEECCSSCCC----CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCcEEECC-CCCCCCcCHHHHhCCCcCcEEECCCCccC----ccCHHHHhcccCcCEEECCCCccCccChhhhccCCC
Confidence 3455555555 333322322 22 555555555554432 1233445555555555555555555554 3555555
Q ss_pred ceEEeecCCCCCccChhhhhcCCCccEeecCCcccccc-chhhhccccCceecCCCccCCCCCCC-C--CCCCCCCCeee
Q 003387 546 LRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHT-ADEFWKMNKLRHLNFGSITLPAHPGK-F--CGSLENLNFIS 621 (824)
Q Consensus 546 Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~~~~~~p-~--i~~L~~L~~l~ 621 (824)
|++|++++|.+..+|+..|+++++|++|++++|.+... |..++++++|++|++++|.+.. ..+ . ...+++|+.|+
T Consensus 99 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~L~~L~ 177 (680)
T 1ziw_A 99 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA-LKSEELDIFANSSLKKLE 177 (680)
T ss_dssp CSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC-BCHHHHGGGTTCEESEEE
T ss_pred CCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc-cCHHHhhccccccccEEE
Confidence 55555555555555533225555555555555554443 2334555555555555555442 111 1 22334555555
Q ss_pred ccCC--CcchhhhcCCCCccceEEEeccccc--chhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCccCcC--CCceE
Q 003387 622 ALHP--CCCTEDILGRLPNLRNLRIRGDLSY--NQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYLFP--HSLTH 695 (824)
Q Consensus 622 ~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~--~~L~~ 695 (824)
++.+ ....+..+..+++|+.|.+.++.-. ....++..+ ..++|+.|+++++. +.......+..+ ++|+.
T Consensus 178 L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l-~~~~L~~L~L~~n~----l~~~~~~~~~~l~~~~L~~ 252 (680)
T 1ziw_A 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQ----LSTTSNTTFLGLKWTNLTM 252 (680)
T ss_dssp CTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH-TTSCCCEEECTTSC----CCEECTTTTGGGGGSCCCE
T ss_pred CCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHh-hhccccEEEccCCc----ccccChhHhhccCcCCCCE
Confidence 5421 1111222444555555555444210 011111111 23556666665541 222211112222 23777
Q ss_pred EEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCc-----ccee----ccCcccCc
Q 003387 696 LSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLE-----EWTM----GNAAMPKL 766 (824)
Q Consensus 696 L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~-----~l~~----~~~~lp~L 766 (824)
|++++|.+.+..+..++.+++|+.|++++|.+.+ ..+..+.++++|++|+++++.... .+|. .+..+++|
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L 331 (680)
T 1ziw_A 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH-LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCL 331 (680)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSCCBSE-ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTC
T ss_pred EECCCCCcCccCcccccCcccccEeeCCCCccCc-cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCC
Confidence 7777776665555666677777777777665543 223344566667777666543111 1221 34456666
Q ss_pred cEEEEecCCCCCCCccccccCccCcEEEecCC
Q 003387 767 ECLIINPCAYLKKMPEQLWYIKSLNKFDCWWP 798 (824)
Q Consensus 767 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 798 (824)
+.|++++|......|..+..+++|+.|++++|
T Consensus 332 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp CEEECCSCCBCCCCTTTTTTCTTCCEEECTTC
T ss_pred CEEECCCCccCCCChhHhccccCCcEEECCCC
Confidence 66666666644434445566666666666655
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=6.3e-22 Score=224.68 Aligned_cols=270 Identities=17% Similarity=0.114 Sum_probs=222.4
Q ss_pred CcccEEEeeCccCccC-CccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchh-hhccccCceecC
Q 003387 521 KLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADE-FWKMNKLRHLNF 598 (824)
Q Consensus 521 ~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L 598 (824)
+.|++|+|++|.++.+ |..+.++++|++|+|++|.+..+++..|+++++|++|+|++|.+..+|.. +.++++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 5799999999999966 56799999999999999999988544449999999999999999999875 789999999999
Q ss_pred CCccCCCCCCC-CCCCCCCCCeeeccCCC--cchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCC
Q 003387 599 GSITLPAHPGK-FCGSLENLNFISALHPC--CCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESK 675 (824)
Q Consensus 599 ~~~~~~~~~~p-~i~~L~~L~~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~ 675 (824)
++|.+.. ..| .++++++|+.|+++.+. ......+..+++|+.|+++++. .....+..+.++++|+.|++++|
T Consensus 112 s~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~l~~l~~L~~L~l~~n-- 186 (477)
T 2id5_A 112 SENKIVI-LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN--LTSIPTEALSHLHGLIVLRLRHL-- 186 (477)
T ss_dssp TTSCCCE-ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC--CSSCCHHHHTTCTTCCEEEEESC--
T ss_pred CCCcccc-CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc--CcccChhHhcccCCCcEEeCCCC--
Confidence 9998874 344 88999999999998432 2223348889999999999985 33334567889999999999986
Q ss_pred CCCccEEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCcc
Q 003387 676 MPRLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEE 755 (824)
Q Consensus 676 ~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 755 (824)
.+..+....+..+++|+.|++++|...+..+......++|+.|++++|.+... ....+..+++|++|+|++|. +..
T Consensus 187 --~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~ 262 (477)
T 2id5_A 187 --NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV-PYLAVRHLVYLRFLNLSYNP-IST 262 (477)
T ss_dssp --CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC-CHHHHTTCTTCCEEECCSSC-CCE
T ss_pred --cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccccc-CHHHhcCccccCeeECCCCc-CCc
Confidence 46666555667889999999999987777777777777999999999987742 22346789999999999987 555
Q ss_pred ce-eccCcccCccEEEEecCCCCCCCccccccCccCcEEEecCCc
Q 003387 756 WT-MGNAAMPKLECLIINPCAYLKKMPEQLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 756 l~-~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 799 (824)
++ ..+..+++|+.|++++|......|..+..+++|+.|++++|.
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 54 346789999999999998666567789999999999999985
No 37
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=4.1e-22 Score=236.72 Aligned_cols=321 Identities=16% Similarity=0.060 Sum_probs=209.3
Q ss_pred CCCeeEEEEEecCCCccc-cccc--CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCC-ccCCCCCc
Q 003387 470 PKKAKRLNAVEREGDFAC-LDDY--DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYP-SGIENLFL 545 (824)
Q Consensus 470 ~~~~r~lsl~~~~~~~~~-~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp-~~i~~l~~ 545 (824)
..+++++.+. ++..... +..+ +++|++|.+.++... ..++..|..+++|++|+|++|.+..+| ..++++++
T Consensus 48 l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 122 (680)
T 1ziw_A 48 YSQLTSLDVG-FNTISKLEPELCQKLPMLKVLNLQHNELS----QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122 (680)
T ss_dssp GTTCSEEECC-SSCCCCCCTTHHHHCTTCCEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTT
T ss_pred CCcCcEEECC-CCccCccCHHHHhcccCcCEEECCCCccC----ccChhhhccCCCCCEEECCCCccCccChhHccccCC
Confidence 3578999998 4444334 4444 999999999988764 245567899999999999999999776 57999999
Q ss_pred ceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchh-hh--ccccCceecCCCccCCCCCCC-CCCCCC------
Q 003387 546 LRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADE-FW--KMNKLRHLNFGSITLPAHPGK-FCGSLE------ 615 (824)
Q Consensus 546 Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~--~L~~L~~L~L~~~~~~~~~~p-~i~~L~------ 615 (824)
|++|++++|.+...+...++++++|++|++++|.+..++.. +. .+++|++|++++|.+.. ..| .++.+.
T Consensus 123 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ 201 (680)
T 1ziw_A 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE-FSPGCFHAIGRLFGLF 201 (680)
T ss_dssp CCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCC-BCTTGGGGSSEECEEE
T ss_pred CCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccc-cChhhhhhhhhhhhhh
Confidence 99999999999877655448999999999999999888654 43 56899999999998764 223 444443
Q ss_pred ---------------------CCCeeeccCCC--cchhhhcCCCCc--cceEEEecccccchhhHHHHhccCCCCCeEEE
Q 003387 616 ---------------------NLNFISALHPC--CCTEDILGRLPN--LRNLRIRGDLSYNQSLLSKSLCRLSCLESLKL 670 (824)
Q Consensus 616 ---------------------~L~~l~~~~~~--~~~~~~l~~l~~--L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l 670 (824)
+|+.|+++.+. ...+..+..++. |+.|+++++. .....+..+..+++|++|++
T Consensus 202 l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L 279 (680)
T 1ziw_A 202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN--LNVVGNDSFAWLPQLEYFFL 279 (680)
T ss_dssp CTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC--CCEECTTTTTTCTTCCEEEC
T ss_pred ccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC--cCccCcccccCcccccEeeC
Confidence 34455544211 111222444543 8888888774 22333456777888888888
Q ss_pred eccC----------CCCCccEEEeCc-------------------cCcCCCceEEEEEcccCCCCCcccccCCCCCCeEE
Q 003387 671 ANES----------KMPRLSKIVLAE-------------------YLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLK 721 (824)
Q Consensus 671 ~~~~----------~~~~L~~l~l~~-------------------~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~ 721 (824)
++|. .+++|+.+.+.+ +..+++|++|++++|.+.+..+..+.++++|++|+
T Consensus 280 ~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 359 (680)
T 1ziw_A 280 EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS 359 (680)
T ss_dssp CSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEE
T ss_pred CCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEE
Confidence 8753 345677777653 24578899999999998887777889999999999
Q ss_pred eeccccCCCeeeecC---CCCCCccEEeeccCCCCccceeccCcccCccEEEEecCCCCCCCc-cccccCccCcEEEecC
Q 003387 722 LKQNSYSGRKLTCGS---YGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAYLKKMP-EQLWYIKSLNKFDCWW 797 (824)
Q Consensus 722 L~~~~~~~~~~~~~~---~~~~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~ 797 (824)
+++|.+....+.... ...++|+.|++++|......+..+..+++|+.|++++|.....+| ..+..+++|+.|++++
T Consensus 360 Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~ 439 (680)
T 1ziw_A 360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439 (680)
T ss_dssp CTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCS
T ss_pred CCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCC
Confidence 987764332221100 011344555554443222222233344444444444444332232 2333344444444444
Q ss_pred C
Q 003387 798 P 798 (824)
Q Consensus 798 c 798 (824)
|
T Consensus 440 n 440 (680)
T 1ziw_A 440 N 440 (680)
T ss_dssp C
T ss_pred C
Confidence 3
No 38
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=4.6e-23 Score=220.03 Aligned_cols=248 Identities=16% Similarity=0.185 Sum_probs=144.0
Q ss_pred CceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeC-ccCc-cCCccCCCCCcceEEeecCCCCC-ccChhhhhcCCC
Q 003387 493 SQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGS-LVLI-QYPSGIENLFLLRYLKLNIPSLN-SLPSSLLSNLLN 569 (824)
Q Consensus 493 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~-~~i~-~lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~~L~~ 569 (824)
.+++.|.+.++.... ....+..+..+++|++|++++ +.+. .+|..++++++|++|++++|.+. .+|..+ +++++
T Consensus 50 ~~l~~L~L~~~~l~~--~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPK--PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSS--CEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG-GGCTT
T ss_pred ceEEEEECCCCCccC--CcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH-hCCCC
Confidence 456666666554421 002234555666666666663 5544 55666666666666666666665 555555 66666
Q ss_pred ccEeecCCcccc-ccchhhhccccCceecCCCccCCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCC-ccceEEEecc
Q 003387 570 LYTLDMPFSYID-HTADEFWKMNKLRHLNFGSITLPAHPGKFCGSLENLNFISALHPCCCTEDILGRLP-NLRNLRIRGD 647 (824)
Q Consensus 570 L~~L~L~~~~l~-~lp~~i~~L~~L~~L~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~ 647 (824)
|++|++++|.+. .+|..+..+++|++|++++|.+.+ ..+.. +..++ +|+.|+++++
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~---------------------~~p~~-l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG---------------------AIPDS-YGSFSKLFTSMTISRN 184 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE---------------------ECCGG-GGCCCTTCCEEECCSS
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccC---------------------cCCHH-HhhhhhcCcEEECcCC
Confidence 666666666555 455566666666666666665431 11122 55555 6666666665
Q ss_pred cccchhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeecccc
Q 003387 648 LSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSY 727 (824)
Q Consensus 648 ~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~ 727 (824)
. .....|..+..++ |+.|++++|.+.+..+..++.+++|+.|++++|.+
T Consensus 185 ~--l~~~~~~~~~~l~-----------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 185 R--LTGKIPPTFANLN-----------------------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp E--EEEECCGGGGGCC-----------------------------CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred e--eeccCChHHhCCc-----------------------------ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence 3 2222333333332 55556666655555566666777777777776666
Q ss_pred CCCeeeecCCCCCCccEEeeccCCCCccceeccCcccCccEEEEecCCCCCCCccccccCccCcEEEecCCc
Q 003387 728 SGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAYLKKMPEQLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 728 ~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 799 (824)
.+. ......+++|++|++++|.....+|..+..+++|+.|++++|+....+|.. .++++|+.+++.++|
T Consensus 234 ~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 234 AFD--LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CCB--GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred eee--cCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 542 222455677777777776643355666667777777777777665566654 667777777777665
No 39
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=4.5e-22 Score=241.44 Aligned_cols=316 Identities=22% Similarity=0.186 Sum_probs=217.0
Q ss_pred CCCCeeEEEEEecCCCccc-cccc--CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccC-CccCCCCC
Q 003387 469 SPKKAKRLNAVEREGDFAC-LDDY--DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQY-PSGIENLF 544 (824)
Q Consensus 469 ~~~~~r~lsl~~~~~~~~~-~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~l-p~~i~~l~ 544 (824)
.+.++++|.+. ++....+ +..+ +++|++|.+.++... ..+.+..|..+++|++|+|++|.+..+ |..+++++
T Consensus 22 lp~~l~~LdLs-~N~i~~i~~~~~~~l~~L~~LdLs~n~~~---~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~ 97 (844)
T 3j0a_A 22 VLNTTERLLLS-FNYIRTVTASSFPFLEQLQLLELGSQYTP---LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF 97 (844)
T ss_dssp SCTTCCEEEEE-SCCCCEECSSSCSSCCSCSEEEECTTCCC---CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCS
T ss_pred CCCCcCEEECC-CCcCCccChhHCcccccCeEEeCCCCCCc---cccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCc
Confidence 56788899888 5444433 4444 888999998887542 334467788899999999999988844 77888899
Q ss_pred cceEEeecCCCCCc-cChh-hhhcCCCccEeecCCccccccc--hhhhccccCceecCCCccCCCCCCC-CCCCC--CCC
Q 003387 545 LLRYLKLNIPSLNS-LPSS-LLSNLLNLYTLDMPFSYIDHTA--DEFWKMNKLRHLNFGSITLPAHPGK-FCGSL--ENL 617 (824)
Q Consensus 545 ~Lr~L~L~~~~i~~-lp~~-i~~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~L~~~~~~~~~~p-~i~~L--~~L 617 (824)
+|++|+|++|.+.. +|.. .++++++|++|+|++|.+..++ ..++++++|++|++++|.+.. ..| .++.+ ++|
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~-~~~~~l~~l~~~~L 176 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL-VCEHELEPLQGKTL 176 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC-CCSGGGHHHHHCSS
T ss_pred ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe-eCHHHcccccCCcc
Confidence 99999999988875 4544 2388999999999998877663 568889999999998888764 333 66666 678
Q ss_pred CeeeccCCC---cchhhhcCCCCc------cceEEEecccccchhhHHHHhc---cCCCCCeEEEeccC-----------
Q 003387 618 NFISALHPC---CCTEDILGRLPN------LRNLRIRGDLSYNQSLLSKSLC---RLSCLESLKLANES----------- 674 (824)
Q Consensus 618 ~~l~~~~~~---~~~~~~l~~l~~------L~~L~l~~~~~~~~~~l~~~l~---~l~~L~~L~l~~~~----------- 674 (824)
+.|+++.+. ..... ++.+++ |+.|+++++. .....+..+. ...++..|.+..+.
T Consensus 177 ~~L~L~~n~l~~~~~~~-~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~ 253 (844)
T 3j0a_A 177 SFFSLAANSLYSRVSVD-WGKCMNPFRNMVLEILDVSGNG--WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253 (844)
T ss_dssp CCCEECCSBSCCCCCCC-CCSSSCTTTTCCBSEEBCSSCC--SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST
T ss_pred ceEECCCCccccccccc-hhhcCCccccCceeEEecCCCc--CchhHHHHHHhhcCcccccceecccccccccccccccC
Confidence 888777321 11122 344443 8889888774 1111121111 11344444443100
Q ss_pred ----------CCCCccEEEeCc----------cCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeee
Q 003387 675 ----------KMPRLSKIVLAE----------YLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTC 734 (824)
Q Consensus 675 ----------~~~~L~~l~l~~----------~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~ 734 (824)
.+++++.|.+++ +..+++|+.|+|++|.+.+..+..++.+++|+.|++++|.+.. ..+.
T Consensus 254 ~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~ 332 (844)
T 3j0a_A 254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE-LYSS 332 (844)
T ss_dssp TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSC-CCSC
T ss_pred CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCc-cCHH
Confidence 123444444443 3567889999999998877777788889999999999887764 2344
Q ss_pred cCCCCCCccEEeeccCCCCcccee-ccCcccCccEEEEecCCCCCCCccccccCccCcEEEecCCc
Q 003387 735 GSYGFPNLKVLHLKSMLWLEEWTM-GNAAMPKLECLIINPCAYLKKMPEQLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 735 ~~~~~~~L~~L~L~~~~~l~~l~~-~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 799 (824)
.+..+++|++|++++|. +..++. .+..+++|+.|++++|.. ..++ .+++|+.|.+++|.
T Consensus 333 ~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l-~~i~----~~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 333 NFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNAL-TTIH----FIPSIPDIFLSGNK 392 (844)
T ss_dssp SCSSCTTCCEEECCSCC-CCCCCSSCSCSCCCCCEEEEETCCS-CCCS----SCCSCSEEEEESCC
T ss_pred HhcCCCCCCEEECCCCC-CCccChhhhcCCCCCCEEECCCCCC-Cccc----CCCCcchhccCCCC
Confidence 56788899999999875 555543 466789999999998873 4444 36778888887775
No 40
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=1.2e-21 Score=237.55 Aligned_cols=108 Identities=20% Similarity=0.081 Sum_probs=51.7
Q ss_pred CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCc-cCCcc--CCCCCcceEEeecCCCCCccC--hhhhhc
Q 003387 492 DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLI-QYPSG--IENLFLLRYLKLNIPSLNSLP--SSLLSN 566 (824)
Q Consensus 492 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~-~lp~~--i~~l~~Lr~L~L~~~~i~~lp--~~i~~~ 566 (824)
+++|++|.+.++... ...+..|..+++|++|+|++|.+. .+|.. ++++++|++|+|++|.+..++ ..+ ++
T Consensus 72 L~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~-~~ 146 (844)
T 3j0a_A 72 LPNLRILDLGSSKIY----FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSF-GK 146 (844)
T ss_dssp CTTCCEEECTTCCCC----EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGG-GT
T ss_pred CCCCCEEECCCCcCc----ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhH-hh
Confidence 455555555554432 123344555555555555555544 23332 455555555555555554332 223 55
Q ss_pred CCCccEeecCCcccccc-chhhhcc--ccCceecCCCccCC
Q 003387 567 LLNLYTLDMPFSYIDHT-ADEFWKM--NKLRHLNFGSITLP 604 (824)
Q Consensus 567 L~~L~~L~L~~~~l~~l-p~~i~~L--~~L~~L~L~~~~~~ 604 (824)
+++|++|+|++|.+..+ |..+..+ ++|+.|++++|.+.
T Consensus 147 L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~ 187 (844)
T 3j0a_A 147 LNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187 (844)
T ss_dssp CSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSC
T ss_pred CCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccc
Confidence 55555555555544432 3334444 45555555555444
No 41
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=8.5e-22 Score=228.29 Aligned_cols=297 Identities=18% Similarity=0.156 Sum_probs=193.1
Q ss_pred CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCC-ccCCCCCcceEEeecCCCCCccChhhhhcCCCc
Q 003387 492 DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNL 570 (824)
Q Consensus 492 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L 570 (824)
+...+++.+.++.... ++... .++|++|+|++|.+..+| ..++++++|++|+|++|.+..+++..|+++++|
T Consensus 30 ~~~~~~l~ls~~~L~~----ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 102 (562)
T 3a79_B 30 NELESMVDYSNRNLTH----VPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDL 102 (562)
T ss_dssp ---CCEEECTTSCCCS----CCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred cCCCcEEEcCCCCCcc----CCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCC
Confidence 5556888888876642 23222 278999999999999776 589999999999999999998865545999999
Q ss_pred cEeecCCccccccchhhhccccCceecCCCccCCCCCCC-CCCCCCCCCeeeccCCCcchhhhcCCCCcc--ceEEEecc
Q 003387 571 YTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGK-FCGSLENLNFISALHPCCCTEDILGRLPNL--RNLRIRGD 647 (824)
Q Consensus 571 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~~~p-~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~ 647 (824)
++|++++|.+..+|.. .+++|++|++++|.+....+| .++++++|+.|+++.+.-.... +..+++| +.|+++++
T Consensus 103 ~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 103 EYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD-LLPVAHLHLSCILLDLV 179 (562)
T ss_dssp CEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT-TGGGTTSCEEEEEEEES
T ss_pred CEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc-hhhhhhceeeEEEeecc
Confidence 9999999999999987 899999999999999854555 8999999999998843322222 4444444 66666654
Q ss_pred cc--c----------------------------------------------------chhhHHHHhccC-----------
Q 003387 648 LS--Y----------------------------------------------------NQSLLSKSLCRL----------- 662 (824)
Q Consensus 648 ~~--~----------------------------------------------------~~~~l~~~l~~l----------- 662 (824)
.- . ........+..+
T Consensus 180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~ 259 (562)
T 3a79_B 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI 259 (562)
T ss_dssp SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEE
T ss_pred cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCC
Confidence 21 0 000011112222
Q ss_pred ----------------CCCCeEEEeccC-----CC-------CC-----------------------------ccEEEeC
Q 003387 663 ----------------SCLESLKLANES-----KM-------PR-----------------------------LSKIVLA 685 (824)
Q Consensus 663 ----------------~~L~~L~l~~~~-----~~-------~~-----------------------------L~~l~l~ 685 (824)
++|++|+++++. |. ++ ++.|.+.
T Consensus 260 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~ 339 (562)
T 3a79_B 260 ETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS 339 (562)
T ss_dssp EECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEE
T ss_pred cCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEcc
Confidence 245555554421 00 11 3333333
Q ss_pred cc--------CcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCC-eeeecCCCCCCccEEeeccCCCCccc
Q 003387 686 EY--------LFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGR-KLTCGSYGFPNLKVLHLKSMLWLEEW 756 (824)
Q Consensus 686 ~~--------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~l~~l 756 (824)
++ ..+++|++|++++|.+.+..+..++++++|+.|++++|.+.+. .++..+..+++|++|++++|.....+
T Consensus 340 ~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 419 (562)
T 3a79_B 340 DTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA 419 (562)
T ss_dssp SSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC
T ss_pred CCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCcc
Confidence 32 3456777777877777766677777777788888777766542 22333556677777777766532223
Q ss_pred eec-cCcc----------------------cCccEEEEecCCCCCCCccccccCccCcEEEecCCc
Q 003387 757 TMG-NAAM----------------------PKLECLIINPCAYLKKMPEQLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 757 ~~~-~~~l----------------------p~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 799 (824)
+.. ...+ ++|+.|++++|. ++.+|..+..+++|+.|++++|.
T Consensus 420 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 420 YDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQ 484 (562)
T ss_dssp SSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSSC
T ss_pred ChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCc-CcccChhhcCCCCCCEEECCCCC
Confidence 321 2222 466666666663 44666666677777777777765
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=9.5e-22 Score=220.72 Aligned_cols=270 Identities=17% Similarity=0.060 Sum_probs=215.0
Q ss_pred CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCcc
Q 003387 492 DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLY 571 (824)
Q Consensus 492 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 571 (824)
+++|++|.+.++.... . + .+..+++|++|++++|.++.+| ++.+++|++|++++|.+..+| + +++++|+
T Consensus 41 l~~L~~L~Ls~n~l~~----~-~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~-~~l~~L~ 109 (457)
T 3bz5_A 41 LATLTSLDCHNSSITD----M-T-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--V-TPLTKLT 109 (457)
T ss_dssp HTTCCEEECCSSCCCC----C-T-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--C-TTCTTCC
T ss_pred cCCCCEEEccCCCccc----C-h-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--c-CCCCcCC
Confidence 8899999999987652 2 2 5788999999999999999886 899999999999999999986 5 9999999
Q ss_pred EeecCCccccccchhhhccccCceecCCCccCCCCCCCCCCCCCCCCeeeccCCCc-chhhhcCCCCccceEEEeccccc
Q 003387 572 TLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKFCGSLENLNFISALHPCC-CTEDILGRLPNLRNLRIRGDLSY 650 (824)
Q Consensus 572 ~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~ 650 (824)
+|++++|.+..+| ++.+++|++|++++|.+.. + .++++++|+.|+++.+.. .... +..+++|+.|+++++.
T Consensus 110 ~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~--l-~l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls~n~-- 181 (457)
T 3bz5_A 110 YLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE--I-DVSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNK-- 181 (457)
T ss_dssp EEECCSSCCSCCC--CTTCTTCCEEECTTSCCSC--C-CCTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEECCSSC--
T ss_pred EEECCCCcCCeec--CCCCCcCCEEECCCCccce--e-ccccCCcCCEEECCCCCcccccc-cccCCcCCEEECCCCc--
Confidence 9999999999987 8999999999999998874 3 378899999999985421 1113 7889999999999885
Q ss_pred chhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCC
Q 003387 651 NQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGR 730 (824)
Q Consensus 651 ~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~ 730 (824)
...++ +..+++|+.|++++| +++.+. ...+++|+.|++++|.+.+ +| ++.+++|+.|++++|.+.+.
T Consensus 182 -l~~l~--l~~l~~L~~L~l~~N----~l~~~~---l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 182 -ITELD--VSQNKLLNRLNCDTN----NITKLD---LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp -CCCCC--CTTCTTCCEEECCSS----CCSCCC---CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred -cceec--cccCCCCCEEECcCC----cCCeec---cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence 22233 778899999999876 355442 4667999999999999876 33 88999999999999998763
Q ss_pred eeeecCCCCCCccE----------EeeccCCCCccceeccCcccCccEEEEecCCCCCCCccc--------cccCccCcE
Q 003387 731 KLTCGSYGFPNLKV----------LHLKSMLWLEEWTMGNAAMPKLECLIINPCAYLKKMPEQ--------LWYIKSLNK 792 (824)
Q Consensus 731 ~~~~~~~~~~~L~~----------L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~~--------l~~l~~L~~ 792 (824)
. .+.|++|+. |++++|..+..+| .+.+++|+.|++++|+.++.+|.. +.++++|+.
T Consensus 249 ~----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~ 322 (457)
T 3bz5_A 249 D----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVY 322 (457)
T ss_dssp C----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCE
T ss_pred C----HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCE
Confidence 2 345666554 4555555555555 467899999999999987776642 445577777
Q ss_pred EEecCCc
Q 003387 793 FDCWWPQ 799 (824)
Q Consensus 793 L~l~~c~ 799 (824)
|+++++.
T Consensus 323 L~L~~N~ 329 (457)
T 3bz5_A 323 LYLNNTE 329 (457)
T ss_dssp EECTTCC
T ss_pred EECCCCc
Confidence 7777665
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=2e-21 Score=209.21 Aligned_cols=282 Identities=15% Similarity=0.127 Sum_probs=171.7
Q ss_pred ceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCc-cCCCCCcceEEeecCCCCCcc-ChhhhhcCCCcc
Q 003387 494 QLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLNSL-PSSLLSNLLNLY 571 (824)
Q Consensus 494 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~i~~l-p~~i~~~L~~L~ 571 (824)
+++.+.+.+..... ++ ..+ .+.|++|+|++|.++.+|. .++++++|++|++++|.+..+ |..+ +++++|+
T Consensus 32 ~l~~l~~~~~~l~~----lp-~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~ 103 (330)
T 1xku_A 32 HLRVVQCSDLGLEK----VP-KDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF-APLVKLE 103 (330)
T ss_dssp ETTEEECTTSCCCS----CC-CSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT-TTCTTCC
T ss_pred CCeEEEecCCCccc----cC-ccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh-cCCCCCC
Confidence 56666666554432 11 111 2567777887777776654 577777788888877777766 4444 7777788
Q ss_pred EeecCCccccccchhhhccccCceecCCCccCCCCCCC-CCCCCCCCCeeeccCCCc----chhhhcCCCCccceEEEec
Q 003387 572 TLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGK-FCGSLENLNFISALHPCC----CTEDILGRLPNLRNLRIRG 646 (824)
Q Consensus 572 ~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~~~p-~i~~L~~L~~l~~~~~~~----~~~~~l~~l~~L~~L~l~~ 646 (824)
+|++++|.++.+|..+. ++|++|++++|.+.. ..+ .++++++|+.|+++.+.. .....+..+++|+.|++++
T Consensus 104 ~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 180 (330)
T 1xku_A 104 RLYLSKNQLKELPEKMP--KTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180 (330)
T ss_dssp EEECCSSCCSBCCSSCC--TTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred EEECCCCcCCccChhhc--ccccEEECCCCcccc-cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence 88887777777776554 677777777777652 222 466677777777663221 2222356667777777766
Q ss_pred ccccchhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccc
Q 003387 647 DLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNS 726 (824)
Q Consensus 647 ~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~ 726 (824)
+. ...+|..+. ++|++|++++| .++.+....+..+++|+.|++++|.+.+..+..++.+++|+.|++++|.
T Consensus 181 n~---l~~l~~~~~--~~L~~L~l~~n----~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 181 TN---ITTIPQGLP--PSLTELHLDGN----KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251 (330)
T ss_dssp SC---CCSCCSSCC--TTCSEEECTTS----CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC
T ss_pred Cc---cccCCcccc--ccCCEEECCCC----cCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc
Confidence 63 122222221 56677776654 3454444444566777777777777665555567777777777777776
Q ss_pred cCCCeeeecCCCCCCccEEeeccCCCCccceecc-------CcccCccEEEEecCCCCC--CCccccccCccCcEEEecC
Q 003387 727 YSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGN-------AAMPKLECLIINPCAYLK--KMPEQLWYIKSLNKFDCWW 797 (824)
Q Consensus 727 ~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~-------~~lp~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~ 797 (824)
+.. ++.....+++|++|++++|. ++.++... ...++|+.|++.+|+... ..|..+..+++|+.+++++
T Consensus 252 l~~--lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 252 LVK--VPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp CSS--CCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC--
T ss_pred Ccc--CChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecc
Confidence 652 44455667777777777765 44443221 124667777777777432 2345666677777777765
Q ss_pred C
Q 003387 798 P 798 (824)
Q Consensus 798 c 798 (824)
+
T Consensus 329 N 329 (330)
T 1xku_A 329 Y 329 (330)
T ss_dssp -
T ss_pred c
Confidence 4
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=1.1e-21 Score=211.52 Aligned_cols=283 Identities=17% Similarity=0.140 Sum_probs=200.7
Q ss_pred ceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCC-ccCCCCCcceEEeecCCCCCccChhhhhcCCCccE
Q 003387 494 QLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYT 572 (824)
Q Consensus 494 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~ 572 (824)
+++.+.+.++.... ++..+ .+.|++|++++|.+..+| ..+.++++|++|++++|.+..+++..++++++|++
T Consensus 34 ~l~~l~~~~~~l~~----ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 106 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA----VPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQK 106 (332)
T ss_dssp ETTEEECCSSCCSS----CCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCE
T ss_pred cCCEEECCCCCccc----cCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCE
Confidence 67888777665532 22112 367888999998888664 57888899999999998888774443488899999
Q ss_pred eecCCccccccchhhhccccCceecCCCccCCCCCCC-CCCCCCCCCeeeccCCCc----chhhhcCCCCccceEEEecc
Q 003387 573 LDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGK-FCGSLENLNFISALHPCC----CTEDILGRLPNLRNLRIRGD 647 (824)
Q Consensus 573 L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~~~p-~i~~L~~L~~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~ 647 (824)
|++++|.+..+|..+. ++|++|++++|.+.. ..+ .++++++|+.|+++.+.. .....+..+ +|+.|+++++
T Consensus 107 L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n 182 (332)
T 2ft3_A 107 LYISKNHLVEIPPNLP--SSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA 182 (332)
T ss_dssp EECCSSCCCSCCSSCC--TTCCEEECCSSCCCC-CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred EECCCCcCCccCcccc--ccCCEEECCCCccCc-cCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC
Confidence 9999888888887665 789999998888863 222 578888888888874322 222325555 7888888877
Q ss_pred cccchhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeecccc
Q 003387 648 LSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSY 727 (824)
Q Consensus 648 ~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~ 727 (824)
. ...+|..+. ++|++|++++| .++.+....+..+++|+.|++++|.+.+..+..++.+++|+.|++++|.+
T Consensus 183 ~---l~~l~~~~~--~~L~~L~l~~n----~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 253 (332)
T 2ft3_A 183 K---LTGIPKDLP--ETLNELHLDHN----KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL 253 (332)
T ss_dssp B---CSSCCSSSC--SSCSCCBCCSS----CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC
T ss_pred C---CCccCcccc--CCCCEEECCCC----cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC
Confidence 4 222333322 57888888776 34544444556778899999999988777677788899999999998877
Q ss_pred CCCeeeecCCCCCCccEEeeccCCCCccceec-cC------cccCccEEEEecCCCC--CCCccccccCccCcEEEecCC
Q 003387 728 SGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMG-NA------AMPKLECLIINPCAYL--KKMPEQLWYIKSLNKFDCWWP 798 (824)
Q Consensus 728 ~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~-~~------~lp~L~~L~l~~c~~l--~~lp~~l~~l~~L~~L~l~~c 798 (824)
. .++.....+++|++|++++|. +..++.. +. .+++|+.|++.+|+.. ...|..+.++++|+.++++++
T Consensus 254 ~--~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 254 S--RVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp C--BCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred e--ecChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 6 355556778899999999876 5555432 11 2577899999999865 344667888899999998887
Q ss_pred c
Q 003387 799 Q 799 (824)
Q Consensus 799 ~ 799 (824)
.
T Consensus 331 ~ 331 (332)
T 2ft3_A 331 K 331 (332)
T ss_dssp -
T ss_pred c
Confidence 5
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=1.9e-22 Score=215.14 Aligned_cols=223 Identities=16% Similarity=0.130 Sum_probs=161.6
Q ss_pred CCeeEEEEEecCCCc--cccccc--CCceeEeeccC-CCCCCCCcchhHhhhcccCcccEEEeeCccCc-cCCccCCCCC
Q 003387 471 KKAKRLNAVEREGDF--ACLDDY--DSQLHSLLCCS-PETRHLDPIDWEKFCGMFKLLRVLDLGSLVLI-QYPSGIENLF 544 (824)
Q Consensus 471 ~~~r~lsl~~~~~~~--~~~~~~--~~~Lr~L~l~~-~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~-~lp~~i~~l~ 544 (824)
..++++.+..+.... .++..+ +++|++|.+.+ +... ...+..|..+++|++|+|++|.+. .+|..+++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~----~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV----GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE----SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccc----ccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 679999999443333 466666 99999999985 5442 234567899999999999999998 8999999999
Q ss_pred cceEEeecCCCCC-ccChhhhhcCCCccEeecCCcccc-ccchhhhccc-cCceecCCCccCCCCCCCCCCCCCCCCeee
Q 003387 545 LLRYLKLNIPSLN-SLPSSLLSNLLNLYTLDMPFSYID-HTADEFWKMN-KLRHLNFGSITLPAHPGKFCGSLENLNFIS 621 (824)
Q Consensus 545 ~Lr~L~L~~~~i~-~lp~~i~~~L~~L~~L~L~~~~l~-~lp~~i~~L~-~L~~L~L~~~~~~~~~~p~i~~L~~L~~l~ 621 (824)
+|++|++++|.+. .+|..+ +++++|++|++++|.+. .+|..++.++ +|++|++++|.+.+
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~---------------- 188 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG---------------- 188 (313)
T ss_dssp TCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE----------------
T ss_pred CCCEEeCCCCccCCcCChHH-hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec----------------
Confidence 9999999999998 788887 99999999999999888 7899999998 99999999998752
Q ss_pred ccCCCcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCccCcCCCceEEEEEcc
Q 003387 622 ALHPCCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYLFPHSLTHLSFSNT 701 (824)
Q Consensus 622 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~ 701 (824)
..+.. +..++ |+.|+++++. .....+..+..+++|+.|++++|. +... +.....+++|++|+|++|
T Consensus 189 -----~~~~~-~~~l~-L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~N~----l~~~-~~~~~~l~~L~~L~Ls~N 254 (313)
T 1ogq_A 189 -----KIPPT-FANLN-LAFVDLSRNM--LEGDASVLFGSDKNTQKIHLAKNS----LAFD-LGKVGLSKNLNGLDLRNN 254 (313)
T ss_dssp -----ECCGG-GGGCC-CSEEECCSSE--EEECCGGGCCTTSCCSEEECCSSE----ECCB-GGGCCCCTTCCEEECCSS
T ss_pred -----cCChH-HhCCc-ccEEECcCCc--ccCcCCHHHhcCCCCCEEECCCCc----eeee-cCcccccCCCCEEECcCC
Confidence 12222 66666 9999999885 333455566667777777776542 1111 111233455555555555
Q ss_pred cCCCCCcccccCCCCCCeEEeeccccC
Q 003387 702 DLMDDPMPTLEKLPLLQVLKLKQNSYS 728 (824)
Q Consensus 702 ~l~~~~~~~l~~l~~L~~L~L~~~~~~ 728 (824)
.+.+..|..++.+++|+.|++++|.+.
T Consensus 255 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 255 RIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp CCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred cccCcCChHHhcCcCCCEEECcCCccc
Confidence 555455555555555555555555544
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=1.7e-21 Score=209.98 Aligned_cols=285 Identities=16% Similarity=0.095 Sum_probs=215.4
Q ss_pred eeEEEEEecCCCcccccccCCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccC-CccCCCCCcceEEee
Q 003387 473 AKRLNAVEREGDFACLDDYDSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQY-PSGIENLFLLRYLKL 551 (824)
Q Consensus 473 ~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L 551 (824)
.+.+.+. +.....+|..+.++++.|.+.++... ...+..|..+++|++|++++|.++.+ |..++++++|++|++
T Consensus 35 l~~l~~~-~~~l~~ip~~~~~~l~~L~l~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 35 LRVVQCS-DLGLKAVPKEISPDTTLLDLQNNDIS----ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp TTEEECC-SSCCSSCCSCCCTTCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred CCEEECC-CCCccccCCCCCCCCeEEECCCCcCC----ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 5566666 44444566666889999999988763 34556789999999999999999865 778999999999999
Q ss_pred cCCCCCccChhhhhcCCCccEeecCCccccccchh-hhccccCceecCCCccCCCC-CCC-CCCCCCCCCeeeccCCC-c
Q 003387 552 NIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADE-FWKMNKLRHLNFGSITLPAH-PGK-FCGSLENLNFISALHPC-C 627 (824)
Q Consensus 552 ~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~~~~-~~p-~i~~L~~L~~l~~~~~~-~ 627 (824)
++|.+..+|..+ . ++|++|++++|.+..+|.. +..+++|++|++++|.+... ..| .++.+ +|+.|+++.+. .
T Consensus 110 ~~n~l~~l~~~~-~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLVEIPPNL-P--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCCSCCSSC-C--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCCccCccc-c--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 999999999977 4 8999999999999999765 88999999999999988632 334 67777 88999887422 1
Q ss_pred chhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCccCcCCCceEEEEEcccCCCCC
Q 003387 628 CTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYLFPHSLTHLSFSNTDLMDDP 707 (824)
Q Consensus 628 ~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~ 707 (824)
.++. .-.++|+.|+++++. .....+..+..+++|+.|++++| .++.+....+..+++|+.|++++|.+. .+
T Consensus 186 ~l~~--~~~~~L~~L~l~~n~--i~~~~~~~l~~l~~L~~L~L~~N----~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 256 (332)
T 2ft3_A 186 GIPK--DLPETLNELHLDHNK--IQAIELEDLLRYSKLYRLGLGHN----QIRMIENGSLSFLPTLRELHLDNNKLS-RV 256 (332)
T ss_dssp SCCS--SSCSSCSCCBCCSSC--CCCCCTTSSTTCTTCSCCBCCSS----CCCCCCTTGGGGCTTCCEEECCSSCCC-BC
T ss_pred ccCc--cccCCCCEEECCCCc--CCccCHHHhcCCCCCCEEECCCC----cCCcCChhHhhCCCCCCEEECCCCcCe-ec
Confidence 1222 123689999999885 33333456788999999999986 355544444567899999999999986 67
Q ss_pred cccccCCCCCCeEEeeccccCCCeeeec-----CCCCCCccEEeeccCCCC--ccceeccCcccCccEEEEecCC
Q 003387 708 MPTLEKLPLLQVLKLKQNSYSGRKLTCG-----SYGFPNLKVLHLKSMLWL--EEWTMGNAAMPKLECLIINPCA 775 (824)
Q Consensus 708 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~-----~~~~~~L~~L~L~~~~~l--~~l~~~~~~lp~L~~L~l~~c~ 775 (824)
|..++.+++|+.|++++|.+........ ...+++|+.|++.+|+.. ...+..+..+++|+.|++++|.
T Consensus 257 p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 257 PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 7789999999999999998764221110 122688999999998843 2234456778999999999886
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=1.1e-20 Score=222.46 Aligned_cols=323 Identities=16% Similarity=0.082 Sum_probs=213.5
Q ss_pred CCCCeeEEEEEecCCCccccc-cc--CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCc-cCCCCC
Q 003387 469 SPKKAKRLNAVEREGDFACLD-DY--DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPS-GIENLF 544 (824)
Q Consensus 469 ~~~~~r~lsl~~~~~~~~~~~-~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~-~i~~l~ 544 (824)
.|..+++|.+. .+....++. .+ +++|++|.+.++... .+.+..|..+++|++|+|++|.++.+|. .|.+++
T Consensus 50 lp~~~~~LdLs-~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~----~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 50 LPFSTKNLDLS-FNPLRHLGSYSFFSFPELQVLDLSRCEIQ----TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 124 (635)
T ss_dssp SCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT
T ss_pred CCcCCCEEEee-CCCCCCCCHHHHhCCCCCCEEECCCCcCC----CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC
Confidence 56788999999 666655654 34 899999999988763 3556789999999999999999998875 578899
Q ss_pred cceEEeecCCCCCccChhhhhcCCCccEeecCCccccc--cchhhhccccCceecCCCccCCCCCCCCCC----------
Q 003387 545 LLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDH--TADEFWKMNKLRHLNFGSITLPAHPGKFCG---------- 612 (824)
Q Consensus 545 ~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~L~~~~~~~~~~p~i~---------- 612 (824)
+|++|+|++|.++.+|...|++|++|++|++++|.+.. +|..++.+++|++|++++|.+.......+.
T Consensus 125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~ 204 (635)
T 4g8a_A 125 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 204 (635)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCC
T ss_pred CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhh
Confidence 99999999999999988655999999999999998765 477889999999999998866420000000
Q ss_pred ------------------------------------------CCCCCC--------------------------------
Q 003387 613 ------------------------------------------SLENLN-------------------------------- 618 (824)
Q Consensus 613 ------------------------------------------~L~~L~-------------------------------- 618 (824)
.+..++
T Consensus 205 ~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 284 (635)
T 4g8a_A 205 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 284 (635)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEE
T ss_pred hhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhh
Confidence 000000
Q ss_pred -----------------------------------------------eeeccCCC----------------------cch
Q 003387 619 -----------------------------------------------FISALHPC----------------------CCT 629 (824)
Q Consensus 619 -----------------------------------------------~l~~~~~~----------------------~~~ 629 (824)
.+++.... ...
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 364 (635)
T 4g8a_A 285 EFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 364 (635)
T ss_dssp EEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCB
T ss_pred hhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCC
Confidence 00000000 000
Q ss_pred hhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccC---------CCCCccEE------------------
Q 003387 630 EDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANES---------KMPRLSKI------------------ 682 (824)
Q Consensus 630 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~---------~~~~L~~l------------------ 682 (824)
.. ...+++|+.|+++.+.-......+.....+.+|+.|++..+. ..++++.+
T Consensus 365 ~~-~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~ 443 (635)
T 4g8a_A 365 FS-EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 443 (635)
T ss_dssp CC-CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTT
T ss_pred cc-cccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccc
Confidence 00 012333444444433211112222333344445555444321 12233333
Q ss_pred -------EeCcc----------CcCCCceEEEEEcccCC-CCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccE
Q 003387 683 -------VLAEY----------LFPHSLTHLSFSNTDLM-DDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKV 744 (824)
Q Consensus 683 -------~l~~~----------~~~~~L~~L~L~~~~l~-~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~ 744 (824)
.+... ..+++|+.|++++|... ...+..+..+++|+.|+|++|.+.+ ..+..+.++++|++
T Consensus 444 l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~-l~~~~f~~l~~L~~ 522 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQV 522 (635)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCE
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCC-cChHHHcCCCCCCE
Confidence 33222 34567888888877533 2345678889999999999887764 23445678899999
Q ss_pred EeeccCCCCccce-eccCcccCccEEEEecCCCCCCCccccccC-ccCcEEEecCCc
Q 003387 745 LHLKSMLWLEEWT-MGNAAMPKLECLIINPCAYLKKMPEQLWYI-KSLNKFDCWWPQ 799 (824)
Q Consensus 745 L~L~~~~~l~~l~-~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l-~~L~~L~l~~c~ 799 (824)
|+|++|. +..++ ..+..+++|+.|++++|......|..+.++ ++|+.|+++++|
T Consensus 523 L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 523 LNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp EECTTSC-CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred EECCCCc-CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 9999986 56554 457789999999999998766667778887 689999998765
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=1e-20 Score=203.69 Aligned_cols=285 Identities=17% Similarity=0.138 Sum_probs=216.9
Q ss_pred eeEEEEEecCCCcccccccCCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccC-CccCCCCCcceEEee
Q 003387 473 AKRLNAVEREGDFACLDDYDSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQY-PSGIENLFLLRYLKL 551 (824)
Q Consensus 473 ~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L 551 (824)
.+.+.+. +.....+|..+.++++.|.+.++.... ..+..|..+++|++|+|++|.++.+ |..++.+++|++|++
T Consensus 33 l~~l~~~-~~~l~~lp~~~~~~l~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 33 LRVVQCS-DLGLEKVPKDLPPDTALLDLQNNKITE----IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp TTEEECT-TSCCCSCCCSCCTTCCEEECCSSCCCC----BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CeEEEec-CCCccccCccCCCCCeEEECCCCcCCE----eChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 4555554 444444665557899999999887642 4456789999999999999999866 788999999999999
Q ss_pred cCCCCCccChhhhhcCCCccEeecCCccccccchh-hhccccCceecCCCccCCCC-CCC-CCCCCCCCCeeeccCCC-c
Q 003387 552 NIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADE-FWKMNKLRHLNFGSITLPAH-PGK-FCGSLENLNFISALHPC-C 627 (824)
Q Consensus 552 ~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~~~~-~~p-~i~~L~~L~~l~~~~~~-~ 627 (824)
++|.++.+|..+ . ++|++|++++|.+..++.. +.++++|++|++++|.+... ..+ .++++++|+.|+++.+. .
T Consensus 108 s~n~l~~l~~~~-~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLKELPEKM-P--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCSBCCSSC-C--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCCccChhh-c--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 999999999877 3 7999999999999888754 88999999999999988632 333 78889999999998422 1
Q ss_pred chhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCccCcCCCceEEEEEcccCCCCC
Q 003387 628 CTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYLFPHSLTHLSFSNTDLMDDP 707 (824)
Q Consensus 628 ~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~ 707 (824)
.++. ...++|+.|+++++. .....+..+..+++|+.|++++| .++.+....+..+++|+.|+|++|.+. .+
T Consensus 185 ~l~~--~~~~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~Ls~n----~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 255 (330)
T 1xku_A 185 TIPQ--GLPPSLTELHLDGNK--ITKVDAASLKGLNNLAKLGLSFN----SISAVDNGSLANTPHLRELHLNNNKLV-KV 255 (330)
T ss_dssp SCCS--SCCTTCSEEECTTSC--CCEECTGGGTTCTTCCEEECCSS----CCCEECTTTGGGSTTCCEEECCSSCCS-SC
T ss_pred cCCc--cccccCCEEECCCCc--CCccCHHHhcCCCCCCEEECCCC----cCceeChhhccCCCCCCEEECCCCcCc-cC
Confidence 2222 223789999999885 33334567889999999999987 466665555677899999999999986 67
Q ss_pred cccccCCCCCCeEEeeccccCCCeeee-----cCCCCCCccEEeeccCCCCccc---eeccCcccCccEEEEecCC
Q 003387 708 MPTLEKLPLLQVLKLKQNSYSGRKLTC-----GSYGFPNLKVLHLKSMLWLEEW---TMGNAAMPKLECLIINPCA 775 (824)
Q Consensus 708 ~~~l~~l~~L~~L~L~~~~~~~~~~~~-----~~~~~~~L~~L~L~~~~~l~~l---~~~~~~lp~L~~L~l~~c~ 775 (824)
|..+..+++|++|++++|.+....... ....+++|+.|++.+++ +..+ +..+..+++|+.+++++|.
T Consensus 256 p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~-~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS-SCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc-ccccccCccccccccceeEEEecccC
Confidence 788999999999999999886522111 11235889999999987 3332 3456678899999998874
No 49
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.84 E-value=6e-20 Score=205.89 Aligned_cols=290 Identities=20% Similarity=0.172 Sum_probs=207.3
Q ss_pred CCCCeeEEEEEecCCCcccccccCCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCccCCCCCcceE
Q 003387 469 SPKKAKRLNAVEREGDFACLDDYDSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPSGIENLFLLRY 548 (824)
Q Consensus 469 ~~~~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~ 548 (824)
.+.+++.+.+. ++....++. ..++|+.|.+.++..... + ...++|++|++++|.++.+| .++++++|++
T Consensus 89 ~~~~L~~L~l~-~n~l~~lp~-~~~~L~~L~l~~n~l~~l-----~---~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~ 157 (454)
T 1jl5_A 89 LPPHLESLVAS-CNSLTELPE-LPQSLKSLLVDNNNLKAL-----S---DLPPLLEYLGVSNNQLEKLP-ELQNSSFLKI 157 (454)
T ss_dssp CCTTCSEEECC-SSCCSSCCC-CCTTCCEEECCSSCCSCC-----C---SCCTTCCEEECCSSCCSSCC-CCTTCTTCCE
T ss_pred CcCCCCEEEcc-CCcCCcccc-ccCCCcEEECCCCccCcc-----c---CCCCCCCEEECcCCCCCCCc-ccCCCCCCCE
Confidence 56788999998 555444442 268899999988766421 1 11268999999999999998 5999999999
Q ss_pred EeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCceecCCCccCCCCCCCCCCCCCCCCeeeccCC-Cc
Q 003387 549 LKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKFCGSLENLNFISALHP-CC 627 (824)
Q Consensus 549 L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~~~p~i~~L~~L~~l~~~~~-~~ 627 (824)
|++++|.+..+|..+ .+|++|++++|.+..+| .++++++|++|++++|.+. .+|.+ ..+|+.|+++.+ -.
T Consensus 158 L~l~~N~l~~lp~~~----~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~--~l~~~--~~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 158 IDVDNNSLKKLPDLP----PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLK--KLPDL--PLSLESIVAGNNILE 228 (454)
T ss_dssp EECCSSCCSCCCCCC----TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS--SCCCC--CTTCCEEECCSSCCS
T ss_pred EECCCCcCcccCCCc----ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCC--cCCCC--cCcccEEECcCCcCC
Confidence 999999999988644 58999999999999998 5999999999999999887 35522 247888888832 22
Q ss_pred chhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccC------CCCCccEEEeCcc------CcCCCceE
Q 003387 628 CTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANES------KMPRLSKIVLAEY------LFPHSLTH 695 (824)
Q Consensus 628 ~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~------~~~~L~~l~l~~~------~~~~~L~~ 695 (824)
.++. ++.+++|+.|+++++. ...+|. ..++|+.|++++|. .+++++.|.++++ ..+++|+.
T Consensus 229 ~lp~-~~~l~~L~~L~l~~N~---l~~l~~---~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~ 301 (454)
T 1jl5_A 229 ELPE-LQNLPFLTTIYADNNL---LKTLPD---LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYY 301 (454)
T ss_dssp SCCC-CTTCTTCCEEECCSSC---CSSCCS---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCE
T ss_pred cccc-cCCCCCCCEEECCCCc---CCcccc---cccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcCCE
Confidence 4455 8899999999999874 222322 24788999998763 2356777777765 23367888
Q ss_pred EEEEcccCCCCCcccccCC-CCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCccceeccCcccCccEEEEecC
Q 003387 696 LSFSNTDLMDDPMPTLEKL-PLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPC 774 (824)
Q Consensus 696 L~L~~~~l~~~~~~~l~~l-~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c 774 (824)
|++++|.+.+ +..+ ++|+.|++++|.+.+ ++ ..+++|++|++++|. +..+|. .+++|+.|++++|
T Consensus 302 L~l~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~--lp---~~~~~L~~L~L~~N~-l~~lp~---~l~~L~~L~L~~N 367 (454)
T 1jl5_A 302 LNASSNEIRS-----LCDLPPSLEELNVSNNKLIE--LP---ALPPRLERLIASFNH-LAEVPE---LPQNLKQLHVEYN 367 (454)
T ss_dssp EECCSSCCSE-----ECCCCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSS
T ss_pred EECcCCcCCc-----ccCCcCcCCEEECCCCcccc--cc---ccCCcCCEEECCCCc-cccccc---hhhhccEEECCCC
Confidence 8888887643 2234 488999998888765 22 236889999998875 666765 5789999999998
Q ss_pred CCCC--CCccccccC-------------ccCcEEEecCCc
Q 003387 775 AYLK--KMPEQLWYI-------------KSLNKFDCWWPQ 799 (824)
Q Consensus 775 ~~l~--~lp~~l~~l-------------~~L~~L~l~~c~ 799 (824)
+... .+|..+.++ ++|+.|++++++
T Consensus 368 ~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 368 PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp CCSSCCCCCTTCCEEECCC---------------------
T ss_pred CCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 8766 677777777 788999988876
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=1.2e-20 Score=202.53 Aligned_cols=223 Identities=18% Similarity=0.201 Sum_probs=175.1
Q ss_pred CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCcc
Q 003387 492 DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLY 571 (824)
Q Consensus 492 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 571 (824)
.++++.|.+.++.... ++..+..+++|++|+|++|.+..+|..++++++|++|+|++|.+..+|..+ +++++|+
T Consensus 80 ~~~l~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~ 153 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ-----FPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASI-ASLNRLR 153 (328)
T ss_dssp STTCCEEEEESSCCSS-----CCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGG-GGCTTCC
T ss_pred ccceeEEEccCCCchh-----cChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHH-hcCcCCC
Confidence 4667777777666532 234466699999999999999999999999999999999999999999998 9999999
Q ss_pred EeecCCc-cccccchhhhc---------cccCceecCCCccCCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCccce
Q 003387 572 TLDMPFS-YIDHTADEFWK---------MNKLRHLNFGSITLPAHPGKFCGSLENLNFISALHPCCCTEDILGRLPNLRN 641 (824)
Q Consensus 572 ~L~L~~~-~l~~lp~~i~~---------L~~L~~L~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~ 641 (824)
+|++++| .+..+|..++. +++|++|++++|.+. .+| .. ++.+++|+.
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp--------------------~~-l~~l~~L~~ 210 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--SLP--------------------AS-IANLQNLKS 210 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC--CCC--------------------GG-GGGCTTCCE
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC--cch--------------------Hh-hcCCCCCCE
Confidence 9999998 67788877665 999999999988764 222 22 777888999
Q ss_pred EEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEE
Q 003387 642 LRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLK 721 (824)
Q Consensus 642 L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~ 721 (824)
|+++++. ...+|..+. .+++|+.|+|++|.+.+..|..++.+++|+.|+
T Consensus 211 L~L~~N~---l~~l~~~l~----------------------------~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 211 LKIRNSP---LSALGPAIH----------------------------HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259 (328)
T ss_dssp EEEESSC---CCCCCGGGG----------------------------GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred EEccCCC---CCcCchhhc----------------------------cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence 9888874 112222233 345666666667777777788888899999999
Q ss_pred eeccccCCCeeeecCCCCCCccEEeeccCCCCccceeccCcccCccEEEEecCC
Q 003387 722 LKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCA 775 (824)
Q Consensus 722 L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~ 775 (824)
+++|.+.+ .++..+..+++|++|+|++|+.+..+|..++.+++|+.+.+..+.
T Consensus 260 L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 260 LKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp CTTCTTCC-BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred CCCCCchh-hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 99877765 345556788999999999998888999888999999998887543
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=2.7e-20 Score=202.38 Aligned_cols=252 Identities=16% Similarity=0.171 Sum_probs=159.5
Q ss_pred CcccEEEeeCccCccCCc-cCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchh-hhccccCceecC
Q 003387 521 KLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADE-FWKMNKLRHLNF 598 (824)
Q Consensus 521 ~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L 598 (824)
++|++|++++|.++.+|. .+.++++|++|++++|.+..+++..|+++++|++|++++|.+..+|.. ++++++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 467777777777776655 577777777777777777766554337777777777777777777665 677777777777
Q ss_pred CCccCCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCC
Q 003387 599 GSITLPAHPGKFCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPR 678 (824)
Q Consensus 599 ~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~ 678 (824)
++|.+.. +|. ...+..+++|+.|+++++.. .....+..+.++++|++|++++| .
T Consensus 132 ~~n~l~~--l~~-------------------~~~~~~l~~L~~L~l~~n~~-~~~~~~~~~~~l~~L~~L~l~~n----~ 185 (353)
T 2z80_A 132 LGNPYKT--LGE-------------------TSLFSHLTKLQILRVGNMDT-FTKIQRKDFAGLTFLEELEIDAS----D 185 (353)
T ss_dssp TTCCCSS--SCS-------------------SCSCTTCTTCCEEEEEESSS-CCEECTTTTTTCCEEEEEEEEET----T
T ss_pred CCCCCcc--cCc-------------------hhhhccCCCCcEEECCCCcc-ccccCHHHccCCCCCCEEECCCC----C
Confidence 7776652 221 01255566666666666520 11112334556667777777665 3
Q ss_pred ccEEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeee--ecCCCCCCccEEeeccCCCCc--
Q 003387 679 LSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLT--CGSYGFPNLKVLHLKSMLWLE-- 754 (824)
Q Consensus 679 L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~--~~~~~~~~L~~L~L~~~~~l~-- 754 (824)
+.......+..+++|++|++++|.+.......+..+++|+.|++++|.+.+.... ......+.++.+++.++..-.
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~ 265 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence 4444444556667778888877776432222344577888888887776542211 112335667777777664221
Q ss_pred --cceeccCcccCccEEEEecCCCCCCCcccc-ccCccCcEEEecCCc
Q 003387 755 --EWTMGNAAMPKLECLIINPCAYLKKMPEQL-WYIKSLNKFDCWWPQ 799 (824)
Q Consensus 755 --~l~~~~~~lp~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~c~ 799 (824)
.+|..+..+++|+.|++++|. ++.+|..+ .++++|+.|+++++|
T Consensus 266 l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 266 LFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHHHHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhhhHHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCC
Confidence 345456678888888888886 45777764 788888888888876
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=2.2e-20 Score=198.79 Aligned_cols=225 Identities=21% Similarity=0.193 Sum_probs=112.2
Q ss_pred CcccEEEeeCccCccCCcc-CCCCCcceEEeecCCCCCcc---ChhhhhcCCCccEeecCCccccccchhhhccccCcee
Q 003387 521 KLLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSLNSL---PSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHL 596 (824)
Q Consensus 521 ~~Lr~L~L~~~~i~~lp~~-i~~l~~Lr~L~L~~~~i~~l---p~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 596 (824)
++|++|+|++|.++.+|.. +.++++|++|++++|.+..+ |..+ ..+++|++|++++|.+..+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECCSCSEEEEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECCCCccccChhhcCCCCCCCEE
Confidence 3556666666665555543 35556666666666555533 3444 45566666666666555555555556666666
Q ss_pred cCCCccCCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCC
Q 003387 597 NFGSITLPAHPGKFCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKM 676 (824)
Q Consensus 597 ~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~ 676 (824)
++++|.+.. ......+..+++|+.|+++++. .....+..+..+++|++|+++
T Consensus 107 ~l~~n~l~~---------------------~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~----- 158 (306)
T 2z66_A 107 DFQHSNLKQ---------------------MSEFSVFLSLRNLIYLDISHTH--TRVAFNGIFNGLSSLEVLKMA----- 158 (306)
T ss_dssp ECTTSEEES---------------------STTTTTTTTCTTCCEEECTTSC--CEECSTTTTTTCTTCCEEECT-----
T ss_pred ECCCCcccc---------------------cccchhhhhccCCCEEECCCCc--CCccchhhcccCcCCCEEECC-----
Confidence 555555431 0000125566777777776664 222233334445555555554
Q ss_pred CCccEEEeCccCcCCCceEEEEEcccCCC-CCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCcc
Q 003387 677 PRLSKIVLAEYLFPHSLTHLSFSNTDLMD-DPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEE 755 (824)
Q Consensus 677 ~~L~~l~l~~~~~~~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 755 (824)
+|.+.+ ..+..++.+++|+.|++++|.+.+ ..+..+..+++|++|++++|. +..
T Consensus 159 -----------------------~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~-l~~ 213 (306)
T 2z66_A 159 -----------------------GNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNN-FFS 213 (306)
T ss_dssp -----------------------TCEEGGGEECSCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSC-CSB
T ss_pred -----------------------CCccccccchhHHhhCcCCCEEECCCCCcCC-cCHHHhcCCCCCCEEECCCCc-cCc
Confidence 443322 233344445555555555444432 112223444555555555543 222
Q ss_pred ce-eccCcccCccEEEEecCCCCCCCccccccCc-cCcEEEecCCc
Q 003387 756 WT-MGNAAMPKLECLIINPCAYLKKMPEQLWYIK-SLNKFDCWWPQ 799 (824)
Q Consensus 756 l~-~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~-~L~~L~l~~c~ 799 (824)
++ ..+..+++|+.|++++|+.....|..+..++ +|+.|++++++
T Consensus 214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 22 2334455555555555554444444455553 55556555544
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=1.8e-20 Score=203.69 Aligned_cols=261 Identities=17% Similarity=0.099 Sum_probs=168.0
Q ss_pred cCCCcccccccCCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccC-CccCCCCCcceEEeecCCCCCcc
Q 003387 481 REGDFACLDDYDSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLNSL 559 (824)
Q Consensus 481 ~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i~~l 559 (824)
+.....+|..+.+++++|.+.++... ..+...|..+++|++|++++|.++.+ |..++++++|++|++++|.++.+
T Consensus 40 ~~~l~~iP~~~~~~L~~L~l~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 115 (353)
T 2z80_A 40 SGSLNSIPSGLTEAVKSLDLSNNRIT----YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115 (353)
T ss_dssp STTCSSCCTTCCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC
T ss_pred CCCcccccccccccCcEEECCCCcCc----ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC
Confidence 33444466666789999999988764 34556789999999999999999866 56799999999999999999999
Q ss_pred ChhhhhcCCCccEeecCCccccccch--hhhccccCceecCCCccCCCCCCC-CCCCCCCCCeeeccCC--CcchhhhcC
Q 003387 560 PSSLLSNLLNLYTLDMPFSYIDHTAD--EFWKMNKLRHLNFGSITLPAHPGK-FCGSLENLNFISALHP--CCCTEDILG 634 (824)
Q Consensus 560 p~~i~~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~L~~~~~~~~~~p-~i~~L~~L~~l~~~~~--~~~~~~~l~ 634 (824)
|...++++++|++|++++|.+..+|. .+.++++|++|++++|.......| .++++++|+.|+++.+ ....+..+.
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 195 (353)
T 2z80_A 116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 195 (353)
T ss_dssp CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHh
Confidence 99855999999999999999999987 688999999999999853222223 5666666666666521 111122255
Q ss_pred CCCccceEEEecccccchhhHHHH-hccCCCCCeEEEeccCCCCCccEEEeCccCcCCCceEEEEEcccCCCCCcccc--
Q 003387 635 RLPNLRNLRIRGDLSYNQSLLSKS-LCRLSCLESLKLANESKMPRLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTL-- 711 (824)
Q Consensus 635 ~l~~L~~L~l~~~~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l-- 711 (824)
.+++|+.|+++++. ...++.. +..+++|+.|+++ +|.+.+..+..+
T Consensus 196 ~l~~L~~L~l~~n~---l~~~~~~~~~~~~~L~~L~L~----------------------------~n~l~~~~~~~l~~ 244 (353)
T 2z80_A 196 SIQNVSHLILHMKQ---HILLLEIFVDVTSSVECLELR----------------------------DTDLDTFHFSELST 244 (353)
T ss_dssp TCSEEEEEEEECSC---STTHHHHHHHHTTTEEEEEEE----------------------------SCBCTTCCCC----
T ss_pred ccccCCeecCCCCc---cccchhhhhhhcccccEEECC----------------------------CCcccccccccccc
Confidence 66666666666653 2223322 2234555555555 444333222211
Q ss_pred -cCCCCCCeEEeeccccCCC---eeeecCCCCCCccEEeeccCCCCccceecc-CcccCccEEEEecCCCC
Q 003387 712 -EKLPLLQVLKLKQNSYSGR---KLTCGSYGFPNLKVLHLKSMLWLEEWTMGN-AAMPKLECLIINPCAYL 777 (824)
Q Consensus 712 -~~l~~L~~L~L~~~~~~~~---~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~-~~lp~L~~L~l~~c~~l 777 (824)
..++.++.++++++.+.+. .++..+..+++|++|++++|. +..+|... +.+++|+.|++++|+..
T Consensus 245 ~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 245 GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp --CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 2244455555554443321 122223455666666666654 44555443 55666666666666543
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=5.7e-20 Score=195.57 Aligned_cols=213 Identities=21% Similarity=0.185 Sum_probs=149.8
Q ss_pred CCcccccccCCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccC---CccCCCCCcceEEeecCCCCCcc
Q 003387 483 GDFACLDDYDSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQY---PSGIENLFLLRYLKLNIPSLNSL 559 (824)
Q Consensus 483 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~l---p~~i~~l~~Lr~L~L~~~~i~~l 559 (824)
....+|..+.++++.|.+.++... .++...|..+++|++|+|++|.+..+ |..+..+++|++|++++|.+..+
T Consensus 18 ~l~~ip~~~~~~l~~L~L~~n~l~----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l 93 (306)
T 2z66_A 18 GLTSVPTGIPSSATRLELESNKLQ----SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM 93 (306)
T ss_dssp CCSSCCSCCCTTCCEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEE
T ss_pred CcccCCCCCCCCCCEEECCCCccC----ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccC
Confidence 334466655789999999988764 24556789999999999999998744 67777899999999999999999
Q ss_pred ChhhhhcCCCccEeecCCccccccch--hhhccccCceecCCCccCCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCC
Q 003387 560 PSSLLSNLLNLYTLDMPFSYIDHTAD--EFWKMNKLRHLNFGSITLPAHPGKFCGSLENLNFISALHPCCCTEDILGRLP 637 (824)
Q Consensus 560 p~~i~~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~ 637 (824)
|..+ .++++|++|++++|.+..+|. .+..+++|++|++++|.+.. .....+..++
T Consensus 94 ~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~~~~~~~l~ 150 (306)
T 2z66_A 94 SSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV----------------------AFNGIFNGLS 150 (306)
T ss_dssp EEEE-ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE----------------------CSTTTTTTCT
T ss_pred hhhc-CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc----------------------cchhhcccCc
Confidence 9987 999999999999999998875 68999999999999987642 1112277889
Q ss_pred ccceEEEecccccchh-hHHHHhccCCCCCeEEEeccCCCCCccEEEeCccCcCCCceEEEEEcccCCCCCcccccCCCC
Q 003387 638 NLRNLRIRGDLSYNQS-LLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPL 716 (824)
Q Consensus 638 ~L~~L~l~~~~~~~~~-~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~ 716 (824)
+|+.|+++++. ... ..|..+..+++|++|++++| .++.+....+..+++|+.|++++|.+.+..+..+..+++
T Consensus 151 ~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~Ls~n----~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 224 (306)
T 2z66_A 151 SLEVLKMAGNS--FQENFLPDIFTELRNLTFLDLSQC----QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 224 (306)
T ss_dssp TCCEEECTTCE--EGGGEECSCCTTCTTCCEEECTTS----CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTT
T ss_pred CCCEEECCCCc--cccccchhHHhhCcCCCEEECCCC----CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCccc
Confidence 99999999874 222 24445555566666666544 233333333344455555555555544333334444555
Q ss_pred CCeEEeeccccC
Q 003387 717 LQVLKLKQNSYS 728 (824)
Q Consensus 717 L~~L~L~~~~~~ 728 (824)
|+.|++++|.+.
T Consensus 225 L~~L~L~~N~l~ 236 (306)
T 2z66_A 225 LQVLDYSLNHIM 236 (306)
T ss_dssp CCEEECTTSCCC
T ss_pred CCEeECCCCCCc
Confidence 555555544443
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=2e-19 Score=202.38 Aligned_cols=240 Identities=18% Similarity=0.138 Sum_probs=109.2
Q ss_pred cEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccc-hhhhccccCceecCCCcc
Q 003387 524 RVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTA-DEFWKMNKLRHLNFGSIT 602 (824)
Q Consensus 524 r~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~ 602 (824)
+.++.++..++.+|..+. .+|++|+|++|.+..+++..|.++++|++|+|++|.+..++ ..+.++++|++|+|++|.
T Consensus 57 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp CEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 344444444444444333 34455555555444443322244555555555554444443 234444555555554444
Q ss_pred CCCCCCC-CCCCCCCCCeeeccCC--CcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCc
Q 003387 603 LPAHPGK-FCGSLENLNFISALHP--CCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRL 679 (824)
Q Consensus 603 ~~~~~~p-~i~~L~~L~~l~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L 679 (824)
+.. ..+ .++.+++|+.|+++.+ .......+..+++|+.|+++++. .+
T Consensus 135 l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~-----------------------------~l 184 (452)
T 3zyi_A 135 LTV-IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK-----------------------------KL 184 (452)
T ss_dssp CSB-CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT-----------------------------TC
T ss_pred CCc-cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCC-----------------------------Cc
Confidence 431 111 1222222222222210 01111125556666666666532 22
Q ss_pred cEEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCccceec
Q 003387 680 SKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMG 759 (824)
Q Consensus 680 ~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~ 759 (824)
..+....+..+++|+.|+|++|.+.. .+.+..+++|+.|+|++|.+.+ ..+..+.++++|+.|++++|......+..
T Consensus 185 ~~i~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 261 (452)
T 3zyi_A 185 EYISEGAFEGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFPE-IRPGSFHGLSSLKKLWVMNSQVSLIERNA 261 (452)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCSS--CCCCTTCTTCCEEECTTSCCSE-ECGGGGTTCTTCCEEECTTSCCCEECTTT
T ss_pred cccChhhccCCCCCCEEECCCCcccc--cccccccccccEEECcCCcCcc-cCcccccCccCCCEEEeCCCcCceECHHH
Confidence 22222223344555555555555432 1245555666666666555543 12333455566666666655422222333
Q ss_pred cCcccCccEEEEecCCCCCCCcc-ccccCccCcEEEecCCc
Q 003387 760 NAAMPKLECLIINPCAYLKKMPE-QLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 760 ~~~lp~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~ 799 (824)
+..+++|+.|++++|.. ..+|. .+..+++|+.|+++++|
T Consensus 262 ~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 262 FDGLASLVELNLAHNNL-SSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTTCTTCCEEECCSSCC-SCCCTTSSTTCTTCCEEECCSSC
T ss_pred hcCCCCCCEEECCCCcC-CccChHHhccccCCCEEEccCCC
Confidence 45566666666666643 33332 34556666666666654
No 56
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.81 E-value=4.5e-19 Score=208.69 Aligned_cols=135 Identities=19% Similarity=0.119 Sum_probs=118.8
Q ss_pred cccccccCCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCc-cCCCCCcceEEeecCCCCCccChhh
Q 003387 485 FACLDDYDSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLNSLPSSL 563 (824)
Q Consensus 485 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~~i 563 (824)
..+|..+.+.++.|.+.++... .+++..|..+++|++|+|++|.|+.+|+ .|.+|++|++|+|++|+++.+|...
T Consensus 44 ~~vP~~lp~~~~~LdLs~N~i~----~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~ 119 (635)
T 4g8a_A 44 YKIPDNLPFSTKNLDLSFNPLR----HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 119 (635)
T ss_dssp SSCCSSSCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGG
T ss_pred CccCCCCCcCCCEEEeeCCCCC----CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH
Confidence 3467666779999999998764 3566789999999999999999998865 5899999999999999999999887
Q ss_pred hhcCCCccEeecCCccccccchh-hhccccCceecCCCccCCCCCCC-CCCCCCCCCeeecc
Q 003387 564 LSNLLNLYTLDMPFSYIDHTADE-FWKMNKLRHLNFGSITLPAHPGK-FCGSLENLNFISAL 623 (824)
Q Consensus 564 ~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~~~~~~p-~i~~L~~L~~l~~~ 623 (824)
|++|++|++|++++|.+..+|.. |+++++|++|++++|.+.....| .++.+++|+.|+++
T Consensus 120 f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 181 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 181 (635)
T ss_dssp GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc
Confidence 79999999999999999999865 89999999999999998765566 78889999988876
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=7.2e-19 Score=203.22 Aligned_cols=257 Identities=18% Similarity=0.073 Sum_probs=191.0
Q ss_pred CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCcc
Q 003387 492 DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLY 571 (824)
Q Consensus 492 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 571 (824)
..++++|.+.++.... ++ ..+. ++|++|+|++|.++.+|. .+++|++|+|++|.++.+|. .+++|+
T Consensus 39 ~~~l~~L~ls~n~L~~----lp-~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~ 104 (622)
T 3g06_A 39 NNGNAVLNVGESGLTT----LP-DCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV----LPPGLL 104 (622)
T ss_dssp HHCCCEEECCSSCCSC----CC-SCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC----CCTTCC
T ss_pred CCCCcEEEecCCCcCc----cC-hhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC----CCCCCC
Confidence 3467888888777643 22 2222 688999999998888887 56889999999998888886 578889
Q ss_pred EeecCCccccccchhhhccccCceecCCCccCCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEecccccc
Q 003387 572 TLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKFCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDLSYN 651 (824)
Q Consensus 572 ~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 651 (824)
+|++++|.+..+|. .+++|+.|++++|.+. .+|. .+++|+.|+++.+. +...-..+++|+.|+++++.
T Consensus 105 ~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~--~lp~--~l~~L~~L~Ls~N~--l~~l~~~~~~L~~L~L~~N~--- 172 (622)
T 3g06_A 105 ELSIFSNPLTHLPA---LPSGLCKLWIFGNQLT--SLPV--LPPGLQELSVSDNQ--LASLPALPSELCKLWAYNNQ--- 172 (622)
T ss_dssp EEEECSCCCCCCCC---CCTTCCEEECCSSCCS--CCCC--CCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSC---
T ss_pred EEECcCCcCCCCCC---CCCCcCEEECCCCCCC--cCCC--CCCCCCEEECcCCc--CCCcCCccCCCCEEECCCCC---
Confidence 99999988888887 6788899999888876 4552 23678888887432 11111245678888888874
Q ss_pred hhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCe
Q 003387 652 QSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRK 731 (824)
Q Consensus 652 ~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 731 (824)
...+| ..+++|+.|++++|. ++.+. ..+++|+.|++++|.+.. ++. .+++|+.|++++|.+.+
T Consensus 173 l~~l~---~~~~~L~~L~Ls~N~----l~~l~----~~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-- 235 (622)
T 3g06_A 173 LTSLP---MLPSGLQELSVSDNQ----LASLP----TLPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-- 235 (622)
T ss_dssp CSCCC---CCCTTCCEEECCSSC----CSCCC----CCCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC--
T ss_pred CCCCc---ccCCCCcEEECCCCC----CCCCC----CccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc--
Confidence 22233 456788888888762 33321 235789999999998753 332 35899999999988775
Q ss_pred eeecCCCCCCccEEeeccCCCCccceeccCcccCccEEEEecCCCCCCCccccccCccCcEEEecCCc
Q 003387 732 LTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAYLKKMPEQLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 732 ~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 799 (824)
++ ..+++|++|++++|. +..+|. .+++|+.|++++|. +..+|..+.++++|+.|++++|+
T Consensus 236 lp---~~l~~L~~L~Ls~N~-L~~lp~---~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 236 LP---VLPSELKELMVSGNR-LTSLPM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CC---CCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSCC
T ss_pred CC---CCCCcCcEEECCCCC-CCcCCc---ccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCCC
Confidence 22 567899999999985 677775 68899999999996 55889999999999999999998
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=3.7e-19 Score=199.42 Aligned_cols=238 Identities=19% Similarity=0.122 Sum_probs=102.6
Q ss_pred cEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccc-hhhhccccCceecCCCcc
Q 003387 524 RVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTA-DEFWKMNKLRHLNFGSIT 602 (824)
Q Consensus 524 r~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~ 602 (824)
+.++.++..++.+|..+. .++++|+|++|.+..++...|.++++|++|+|++|.+..++ ..+.++++|++|++++|.
T Consensus 46 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp CEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 344444444555554443 34555555555555444333355555555555555554443 234455555555555554
Q ss_pred CCCCCCC--CCCCCCCCCeeeccCC--CcchhhhcCCCCccceEEEecccccchhhHH-HHhccCCCCCeEEEeccCCCC
Q 003387 603 LPAHPGK--FCGSLENLNFISALHP--CCCTEDILGRLPNLRNLRIRGDLSYNQSLLS-KSLCRLSCLESLKLANESKMP 677 (824)
Q Consensus 603 ~~~~~~p--~i~~L~~L~~l~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~ 677 (824)
+. .+| .+..+++|+.|+++.+ .......+..+++|+.|+++++. ....++ ..+.++++|++|++++|.
T Consensus 124 l~--~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~--~l~~i~~~~~~~l~~L~~L~L~~n~--- 196 (440)
T 3zyj_A 124 LT--TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK--RLSYISEGAFEGLSNLRYLNLAMCN--- 196 (440)
T ss_dssp CS--SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT--TCCEECTTTTTTCSSCCEEECTTSC---
T ss_pred CC--eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCC--CcceeCcchhhcccccCeecCCCCc---
Confidence 43 111 2333333333333311 11111225666777777776542 111111 234445555555555431
Q ss_pred CccEEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCccce
Q 003387 678 RLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWT 757 (824)
Q Consensus 678 ~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~ 757 (824)
++.+ ..+..+++|+.|+|++|.+....+..+.++++|+.|++++|.+.. .....+..+++|++|+|++|. +..++
T Consensus 197 -l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~-l~~~~ 271 (440)
T 3zyj_A 197 -LREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV-IERNAFDNLQSLVEINLAHNN-LTLLP 271 (440)
T ss_dssp -CSSC--CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTSSTTCTTCCEEECTTSC-CCCCC
T ss_pred -Cccc--cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE-EChhhhcCCCCCCEEECCCCC-CCccC
Confidence 2211 122344445555555554444444444455555555555444332 111223344444444444443 33332
Q ss_pred ec-cCcccCccEEEEecCC
Q 003387 758 MG-NAAMPKLECLIINPCA 775 (824)
Q Consensus 758 ~~-~~~lp~L~~L~l~~c~ 775 (824)
.. +..+++|+.|++++||
T Consensus 272 ~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 272 HDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTTTSSCTTCCEEECCSSC
T ss_pred hhHhccccCCCEEEcCCCC
Confidence 21 2334444444444444
No 59
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.80 E-value=7.6e-19 Score=196.91 Aligned_cols=289 Identities=20% Similarity=0.130 Sum_probs=192.5
Q ss_pred CCCCeeEEEEEecCCCcccccccCCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCccCCCCCcceE
Q 003387 469 SPKKAKRLNAVEREGDFACLDDYDSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPSGIENLFLLRY 548 (824)
Q Consensus 469 ~~~~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~ 548 (824)
...+++.+.+. ++....++. ..++|++|.+.++.... + + .|..+++|++|++++|.++.+|..+ .+|++
T Consensus 109 ~~~~L~~L~l~-~n~l~~l~~-~~~~L~~L~L~~n~l~~----l-p-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~ 177 (454)
T 1jl5_A 109 LPQSLKSLLVD-NNNLKALSD-LPPLLEYLGVSNNQLEK----L-P-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEF 177 (454)
T ss_dssp CCTTCCEEECC-SSCCSCCCS-CCTTCCEEECCSSCCSS----C-C-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCE
T ss_pred ccCCCcEEECC-CCccCcccC-CCCCCCEEECcCCCCCC----C-c-ccCCCCCCCEEECCCCcCcccCCCc---ccccE
Confidence 34678888888 544432322 24789999998887642 2 2 4888999999999999998888654 48999
Q ss_pred EeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCceecCCCccCCCCCCCCCCCCCCCCeeeccCCC-c
Q 003387 549 LKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKFCGSLENLNFISALHPC-C 627 (824)
Q Consensus 549 L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~-~ 627 (824)
|++++|.+..+| .+ +++++|++|++++|.+..+|... ++|++|++++|.+. .+|.++.+++|+.|+++.+. .
T Consensus 178 L~L~~n~l~~l~-~~-~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~--~lp~~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 178 IAAGNNQLEELP-EL-QNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp EECCSSCCSSCC-CC-TTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCS
T ss_pred EECcCCcCCcCc-cc-cCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCC--cccccCCCCCCCEEECCCCcCC
Confidence 999999999988 46 99999999999999888887633 58999999999887 67778899999999988432 1
Q ss_pred chhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccC------CCCCccEEEeCcc-----CcC-CCceE
Q 003387 628 CTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANES------KMPRLSKIVLAEY-----LFP-HSLTH 695 (824)
Q Consensus 628 ~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~------~~~~L~~l~l~~~-----~~~-~~L~~ 695 (824)
.++ ..+++|+.|+++++. ...+|. ..++|+.|++++|. .+++++.|.+.++ ..+ ++|+.
T Consensus 251 ~l~---~~~~~L~~L~l~~N~---l~~l~~---~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~ 321 (454)
T 1jl5_A 251 TLP---DLPPSLEALNVRDNY---LTDLPE---LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEE 321 (454)
T ss_dssp SCC---SCCTTCCEEECCSSC---CSCCCC---CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCE
T ss_pred ccc---ccccccCEEECCCCc---ccccCc---ccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCE
Confidence 122 234789999998874 222332 23688899988763 2357888887765 223 68999
Q ss_pred EEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCc--cceeccCcc----------
Q 003387 696 LSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLE--EWTMGNAAM---------- 763 (824)
Q Consensus 696 L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~--~l~~~~~~l---------- 763 (824)
|++++|.+.+ ++.. +++|+.|++++|.+.. ++. .+++|++|++++|.... .+|..++.+
T Consensus 322 L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~--lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~ 392 (454)
T 1jl5_A 322 LNVSNNKLIE-LPAL---PPRLERLIASFNHLAE--VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVP 392 (454)
T ss_dssp EECCSSCCSC-CCCC---CTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------
T ss_pred EECCCCcccc-cccc---CCcCCEEECCCCcccc--ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccc
Confidence 9999999865 4433 6899999999998874 333 57899999999987444 456566655
Q ss_pred ---cCccEEEEecCCCCC--CCccccccCccCcEEEecCCc
Q 003387 764 ---PKLECLIINPCAYLK--KMPEQLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 764 ---p~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~c~ 799 (824)
++|+.|++++|+... .+|. +|+.|.+.+|.
T Consensus 393 ~~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~ 427 (454)
T 1jl5_A 393 ELPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSER 427 (454)
T ss_dssp -----------------------------------------
T ss_pred cccCcCCEEECCCCcCCccccchh------hHhheeCcCcc
Confidence 899999999998654 5564 34555555544
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=1e-19 Score=191.50 Aligned_cols=248 Identities=19% Similarity=0.164 Sum_probs=139.6
Q ss_pred CcccEEEeeCccCccCC-ccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCcc-cccc-chhhhccccCceec
Q 003387 521 KLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSY-IDHT-ADEFWKMNKLRHLN 597 (824)
Q Consensus 521 ~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~-l~~l-p~~i~~L~~L~~L~ 597 (824)
+.|++|++++|.++.+| ..+..+++|++|++++|.+..+++..+.++++|++|++++|. +..+ |..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 45666666666665444 345566666666666666665533222666666666666663 5555 34456666666666
Q ss_pred CCCccCCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCC
Q 003387 598 FGSITLPAHPGKFCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMP 677 (824)
Q Consensus 598 L~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~ 677 (824)
+++|.+.. . .+..+..+++|+.|+++++. .....+..+..+++|++|++++|
T Consensus 112 l~~n~l~~-~---------------------~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n---- 163 (285)
T 1ozn_A 112 LDRCGLQE-L---------------------GPGLFRGLAALQYLYLQDNA--LQALPDDTFRDLGNLTHLFLHGN---- 163 (285)
T ss_dssp CTTSCCCC-C---------------------CTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSS----
T ss_pred CCCCcCCE-E---------------------CHhHhhCCcCCCEEECCCCc--ccccCHhHhccCCCccEEECCCC----
Confidence 66665542 1 11224556666666666553 11112233556667777777655
Q ss_pred CccEEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCccce
Q 003387 678 RLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWT 757 (824)
Q Consensus 678 ~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~ 757 (824)
+++.+....+..+++|+.|++++|.+.+..+..++.+++|+.|++++|.+.+. ....+..+++|++|++++|+.....+
T Consensus 164 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL-PTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC-CHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred cccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcC-CHHHcccCcccCEEeccCCCccCCCC
Confidence 35544433445667778888888777666677777788888888887776652 22235667788888887775222111
Q ss_pred eccCcccCccEEEEecCCCCCCCccccc--cCccCcEEEecCC
Q 003387 758 MGNAAMPKLECLIINPCAYLKKMPEQLW--YIKSLNKFDCWWP 798 (824)
Q Consensus 758 ~~~~~lp~L~~L~l~~c~~l~~lp~~l~--~l~~L~~L~l~~c 798 (824)
....+..|+.+....+......|..+. .+..++..++.+|
T Consensus 243 -~~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 243 -ARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp -GHHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred -cHHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 111123344444454444444555443 2455666666666
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=6.1e-21 Score=204.02 Aligned_cols=247 Identities=15% Similarity=0.091 Sum_probs=160.9
Q ss_pred hhHhhhcccCcccEEEeeCccCccCC-ccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhcc
Q 003387 512 DWEKFCGMFKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKM 590 (824)
Q Consensus 512 ~~~~~~~~~~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L 590 (824)
.+...+..+++|++|+|++|.++.++ ..++++++|++|+|++|.+...++ + ..+++|++|++++|.+..+| .+
T Consensus 25 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~-~~l~~L~~L~Ls~n~l~~l~----~~ 98 (317)
T 3o53_A 25 ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-L-ESLSTLRTLDLNNNYVQELL----VG 98 (317)
T ss_dssp HHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-E-TTCTTCCEEECCSSEEEEEE----EC
T ss_pred hHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-h-hhcCCCCEEECcCCcccccc----CC
Confidence 45677788899999999999998665 578999999999999999987776 5 99999999999999998877 34
Q ss_pred ccCceecCCCccCCCCCCCCCCCCCCCCeeeccCCC--cchhhhcCCCCccceEEEecccccchhhHHHHh-ccCCCCCe
Q 003387 591 NKLRHLNFGSITLPAHPGKFCGSLENLNFISALHPC--CCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSL-CRLSCLES 667 (824)
Q Consensus 591 ~~L~~L~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l-~~l~~L~~ 667 (824)
++|++|++++|.+.. ++ ...+++|+.|+++.+. ......+..+++|+.|+++++. .....+..+ ..+++|++
T Consensus 99 ~~L~~L~l~~n~l~~--~~-~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~~l~~L~~ 173 (317)
T 3o53_A 99 PSIETLHAANNNISR--VS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE--IDTVNFAELAASSDTLEH 173 (317)
T ss_dssp TTCCEEECCSSCCSE--EE-ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC--CCEEEGGGGGGGTTTCCE
T ss_pred CCcCEEECCCCccCC--cC-ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC--CCcccHHHHhhccCcCCE
Confidence 899999999998763 22 1224556666666321 1122225556677777776664 122122222 34566677
Q ss_pred EEEeccCCCCCccEEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEee
Q 003387 668 LKLANESKMPRLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHL 747 (824)
Q Consensus 668 L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L 747 (824)
|++++| .++.+ .+...+++|+.|+|++|.+.+ .++.+..+++|+.|++++|.+.. ++.....+++|+.|++
T Consensus 174 L~L~~N----~l~~~--~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~l~~L~~L~l 244 (317)
T 3o53_A 174 LNLQYN----FIYDV--KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDL 244 (317)
T ss_dssp EECTTS----CCCEE--ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEEC
T ss_pred EECCCC----cCccc--ccccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc--hhhHhhcCCCCCEEEc
Confidence 776655 24443 222345666677776666543 33346666667777776666552 3444555666666666
Q ss_pred ccCCCC-ccceeccCcccCccEEEEecCCCCC
Q 003387 748 KSMLWL-EEWTMGNAAMPKLECLIINPCAYLK 778 (824)
Q Consensus 748 ~~~~~l-~~l~~~~~~lp~L~~L~l~~c~~l~ 778 (824)
++|+.. ..++.....+++|+.|++.+|+.++
T Consensus 245 ~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 245 RGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp TTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 666533 2344445556666666666555443
No 62
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=5.6e-20 Score=214.64 Aligned_cols=324 Identities=12% Similarity=0.030 Sum_probs=194.2
Q ss_pred CCeeEEEEEecCCCccccccc---CCc-eeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCcc-----CCccCC
Q 003387 471 KKAKRLNAVEREGDFACLDDY---DSQ-LHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQ-----YPSGIE 541 (824)
Q Consensus 471 ~~~r~lsl~~~~~~~~~~~~~---~~~-Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~-----lp~~i~ 541 (824)
..++.|.+..+......+..+ ++. |+.|.+.++... ....+......+++|++|+|++|.+.. ++..+.
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF--TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE--EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc--CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 567888888332222222222 334 999999887632 122355666789999999999998652 333445
Q ss_pred CCCcceEEeecCCCCC-----ccChhhhhcCCCccEeecCCccccccchhhhccccCceecCCCccCCC--CCCC-CCCC
Q 003387 542 NLFLLRYLKLNIPSLN-----SLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPA--HPGK-FCGS 613 (824)
Q Consensus 542 ~l~~Lr~L~L~~~~i~-----~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~--~~~p-~i~~ 613 (824)
.+++|++|++++|.+. .++..+ .++++|++|++++|.+..+|..+..+++|++|+++.+.... ...+ .++.
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIA-RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHH-HHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHH-hhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 6889999999999886 344444 78999999999999999999889999999999987533221 1122 5666
Q ss_pred CCCCCeeeccC-CCcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccC----------CCCCccEE
Q 003387 614 LENLNFISALH-PCCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANES----------KMPRLSKI 682 (824)
Q Consensus 614 L~~L~~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~----------~~~~L~~l 682 (824)
+++|+.+.+.. ....++..+..+++|++|+++++. .....++..+..+++|++|++..+. .+++|+.|
T Consensus 269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred cccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence 66677766652 122333335566677777776664 2233333445566666666665321 34556666
Q ss_pred EeCc----------c------------CcCCCceEEEEEcccCCCCCcccccC-CCCCCeEEeec----cccCC------
Q 003387 683 VLAE----------Y------------LFPHSLTHLSFSNTDLMDDPMPTLEK-LPLLQVLKLKQ----NSYSG------ 729 (824)
Q Consensus 683 ~l~~----------~------------~~~~~L~~L~L~~~~l~~~~~~~l~~-l~~L~~L~L~~----~~~~~------ 729 (824)
.+.. + ..+++|++|+++.+.+++..+..++. +++|+.|++++ |.+++
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~ 427 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence 6662 2 22455566665555444333333333 55555555541 22221
Q ss_pred -------------------------CeeeecCCCCCCccEEeeccCCCCcc--ceeccCcccCccEEEEecCCCCCC-Cc
Q 003387 730 -------------------------RKLTCGSYGFPNLKVLHLKSMLWLEE--WTMGNAAMPKLECLIINPCAYLKK-MP 781 (824)
Q Consensus 730 -------------------------~~~~~~~~~~~~L~~L~L~~~~~l~~--l~~~~~~lp~L~~L~l~~c~~l~~-lp 781 (824)
..+......+++|++|+|++|. +.. ++.....+++|++|+|++|+.... ++
T Consensus 428 ~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 506 (592)
T 3ogk_B 428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA 506 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCCCBHHHHH
T ss_pred HHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCCCcHHHHH
Confidence 1111111235666666666654 322 222345677888888888873211 34
Q ss_pred cccccCccCcEEEecCCc
Q 003387 782 EQLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 782 ~~l~~l~~L~~L~l~~c~ 799 (824)
..+..+++|+.|++++|+
T Consensus 507 ~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 507 AAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHCSSCCEEEEESCB
T ss_pred HHHHhcCccCeeECcCCc
Confidence 445567788888888887
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=7.5e-19 Score=197.68 Aligned_cols=235 Identities=21% Similarity=0.194 Sum_probs=171.0
Q ss_pred CCCcccccccCCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCC-ccCCCCCcceEEeecCCCCCccC
Q 003387 482 EGDFACLDDYDSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLNSLP 560 (824)
Q Consensus 482 ~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp 560 (824)
.....+|..+.++++.|.+.++... ...+..|..+++|++|+|++|.+..++ ..+..+++|++|+|++|.+..+|
T Consensus 64 ~~l~~iP~~~~~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 139 (452)
T 3zyi_A 64 RGLSEVPQGIPSNTRYLNLMENNIQ----MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP 139 (452)
T ss_dssp SCCSSCCSCCCTTCSEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC
T ss_pred CCcCccCCCCCCCccEEECcCCcCc----eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC
Confidence 3334466555778888888887663 245567888889999999998888554 66888889999999999888888
Q ss_pred hhhhhcCCCccEeecCCccccccch-hhhccccCceecCCCccCCCCCCC-CCCCCCCCCeeeccCC-CcchhhhcCCCC
Q 003387 561 SSLLSNLLNLYTLDMPFSYIDHTAD-EFWKMNKLRHLNFGSITLPAHPGK-FCGSLENLNFISALHP-CCCTEDILGRLP 637 (824)
Q Consensus 561 ~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~~~p-~i~~L~~L~~l~~~~~-~~~~~~~l~~l~ 637 (824)
...|.++++|++|+|++|.+..+|. .+.++++|++|++++|.......+ .+..+++|+.|+++.+ -..++. +..++
T Consensus 140 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~ 218 (452)
T 3zyi_A 140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLV 218 (452)
T ss_dssp TTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCT
T ss_pred hhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-ccccc
Confidence 8765888899999999888888875 478888999998887544332222 5777888888887732 223344 67777
Q ss_pred ccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCC
Q 003387 638 NLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLL 717 (824)
Q Consensus 638 ~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L 717 (824)
+|+.|+++++. .....+..+.++++|+.|++++| .++.+....+..+++|+.|+|++|.+....+..+..+++|
T Consensus 219 ~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 219 GLEELEMSGNH--FPEIRPGSFHGLSSLKKLWVMNS----QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292 (452)
T ss_dssp TCCEEECTTSC--CSEECGGGGTTCTTCCEEECTTS----CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred cccEEECcCCc--CcccCcccccCccCCCEEEeCCC----cCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence 88888887774 33334566777778888888765 4566555555667788888888887776666667778888
Q ss_pred CeEEeecccc
Q 003387 718 QVLKLKQNSY 727 (824)
Q Consensus 718 ~~L~L~~~~~ 727 (824)
+.|+|++|.+
T Consensus 293 ~~L~L~~Np~ 302 (452)
T 3zyi_A 293 VELHLHHNPW 302 (452)
T ss_dssp CEEECCSSCE
T ss_pred CEEEccCCCc
Confidence 8888877654
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=6.5e-19 Score=197.48 Aligned_cols=234 Identities=18% Similarity=0.189 Sum_probs=158.1
Q ss_pred CCcccccccCCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCC-ccCCCCCcceEEeecCCCCCccCh
Q 003387 483 GDFACLDDYDSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLNSLPS 561 (824)
Q Consensus 483 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~ 561 (824)
....+|..+.++++.|.+.++... ......|..+++|++|+|++|.+..++ ..+..+++|++|+|++|.++.+|.
T Consensus 54 ~l~~iP~~~~~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 129 (440)
T 3zyj_A 54 NLREVPDGISTNTRLLNLHENQIQ----IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPN 129 (440)
T ss_dssp CCSSCCSCCCTTCSEEECCSCCCC----EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCT
T ss_pred CcCcCCCCCCCCCcEEEccCCcCC----eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCH
Confidence 334456555777888888777653 244466778888888888888877554 567778888888888888888877
Q ss_pred hhhhcCCCccEeecCCccccccch-hhhccccCceecCCCccCCCCCCC-CCCCCCCCCeeeccCC-CcchhhhcCCCCc
Q 003387 562 SLLSNLLNLYTLDMPFSYIDHTAD-EFWKMNKLRHLNFGSITLPAHPGK-FCGSLENLNFISALHP-CCCTEDILGRLPN 638 (824)
Q Consensus 562 ~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~~~p-~i~~L~~L~~l~~~~~-~~~~~~~l~~l~~ 638 (824)
..|..+++|++|+|++|.+..+|. .+.++++|++|++++|.......+ .+.++++|+.|+++.+ -..++. +..+++
T Consensus 130 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~ 208 (440)
T 3zyj_A 130 GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIK 208 (440)
T ss_dssp TTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSS
T ss_pred hHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcc
Confidence 555788888888888888877765 477788888888877544332222 5677777777777632 223344 666777
Q ss_pred cceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCC
Q 003387 639 LRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQ 718 (824)
Q Consensus 639 L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~ 718 (824)
|+.|+++++. .....+..+.++++|+.|++++| .++.+....+..+++|+.|+|++|.+....+..+..+++|+
T Consensus 209 L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 209 LDELDLSGNH--LSAIRPGSFQGLMHLQKLWMIQS----QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282 (440)
T ss_dssp CCEEECTTSC--CCEECTTTTTTCTTCCEEECTTC----CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred cCEEECCCCc--cCccChhhhccCccCCEEECCCC----ceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence 7777777764 22333455666777777777665 35555555556667777777777777665556667777777
Q ss_pred eEEeecccc
Q 003387 719 VLKLKQNSY 727 (824)
Q Consensus 719 ~L~L~~~~~ 727 (824)
.|+|++|.+
T Consensus 283 ~L~L~~Np~ 291 (440)
T 3zyj_A 283 RIHLHHNPW 291 (440)
T ss_dssp EEECCSSCE
T ss_pred EEEcCCCCc
Confidence 777776654
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=3.5e-20 Score=209.88 Aligned_cols=235 Identities=15% Similarity=0.093 Sum_probs=153.6
Q ss_pred cccCcccEEEeeCccCccCC-ccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCcee
Q 003387 518 GMFKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHL 596 (824)
Q Consensus 518 ~~~~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 596 (824)
..+++|++|+|++|.+..+| ..++.+++|++|+|++|.+...++ + +.+++|++|+|++|.+..+|. .++|++|
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l-~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L 104 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-L-ESLSTLRTLDLNNNYVQELLV----GPSIETL 104 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-C-TTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-c-ccCCCCCEEEecCCcCCCCCC----CCCcCEE
Confidence 44558999999999988664 678889999999999999887666 5 899999999999998888774 3889999
Q ss_pred cCCCccCCCCCCCCCCCCCCCCeeeccCCC--cchhhhcCCCCccceEEEecccccchhhHHHHhc-cCCCCCeEEEecc
Q 003387 597 NFGSITLPAHPGKFCGSLENLNFISALHPC--CCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLC-RLSCLESLKLANE 673 (824)
Q Consensus 597 ~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~-~l~~L~~L~l~~~ 673 (824)
++++|.+.. ++ ...+++|+.|+++.+. ...+..++.+++|+.|+++++. .....|..+. .+++|+.|++++|
T Consensus 105 ~L~~N~l~~--~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 105 HAANNNISR--VS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE--IDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp ECCSSCCCC--EE-ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC--CCEEEGGGGGGGTTTCCEEECTTS
T ss_pred ECcCCcCCC--CC-ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC--CCCcChHHHhhhCCcccEEecCCC
Confidence 999988763 22 1234556666666321 1222225667777777777664 2222344443 5667777777665
Q ss_pred CCCCCccEEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCC
Q 003387 674 SKMPRLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWL 753 (824)
Q Consensus 674 ~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 753 (824)
.++.+ .+...+++|+.|+|++|.+.+ .++.++.+++|+.|++++|.+.+ ++.....+++|+.|++++|+..
T Consensus 180 ----~l~~~--~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 180 ----FIYDV--KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp ----CCCEE--ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCBC
T ss_pred ----ccccc--cccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc--cchhhccCCCCCEEEcCCCCCc
Confidence 24443 222346677777777776654 33346667777777777666653 4444556677777777766533
Q ss_pred -ccceeccCcccCccEEEEe
Q 003387 754 -EEWTMGNAAMPKLECLIIN 772 (824)
Q Consensus 754 -~~l~~~~~~lp~L~~L~l~ 772 (824)
..++.....+++|+.|.+.
T Consensus 251 c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 251 CGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred CcchHHHHHhCCCCcEEecc
Confidence 2344445566666666665
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=1.3e-18 Score=201.20 Aligned_cols=262 Identities=16% Similarity=0.039 Sum_probs=202.1
Q ss_pred CeeEEEEEecCCCcccccccCCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCccCCCCCcceEEee
Q 003387 472 KAKRLNAVEREGDFACLDDYDSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKL 551 (824)
Q Consensus 472 ~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L 551 (824)
.++.+.+. ++....+|..+.++|+.|.+.++.... ++ . .+++|++|+|++|.++.+|. .+++|++|++
T Consensus 41 ~l~~L~ls-~n~L~~lp~~l~~~L~~L~L~~N~l~~----lp-~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVG-ESGLTTLPDCLPAHITTLVIPDNNLTS----LP-A---LPPELRTLEVSGNQLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECC-SSCCSCCCSCCCTTCSEEEECSCCCSC----CC-C---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred CCcEEEec-CCCcCccChhhCCCCcEEEecCCCCCC----CC-C---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence 46778887 555555776668899999999987653 12 1 57899999999999999987 6799999999
Q ss_pred cCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCceecCCCccCCCCCCCCCCCCCCCCeeeccCCCcchhh
Q 003387 552 NIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKFCGSLENLNFISALHPCCCTED 631 (824)
Q Consensus 552 ~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~ 631 (824)
++|.++.+|. .+++|++|++++|.+..+|.. +++|++|++++|.+. .+|. .+.+|+.|++..+. +..
T Consensus 109 s~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~--~l~~--~~~~L~~L~L~~N~--l~~ 175 (622)
T 3g06_A 109 FSNPLTHLPA----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLA--SLPA--LPSELCKLWAYNNQ--LTS 175 (622)
T ss_dssp CSCCCCCCCC----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS--CCCC--CCTTCCEEECCSSC--CSC
T ss_pred cCCcCCCCCC----CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCC--CcCC--ccCCCCEEECCCCC--CCC
Confidence 9999999987 478999999999999999974 589999999999887 4452 23567778777322 111
Q ss_pred hcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCccCcCCCceEEEEEcccCCCCCcccc
Q 003387 632 ILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTL 711 (824)
Q Consensus 632 ~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l 711 (824)
+-..+++|+.|+++++. ...+|. ..++|+.|++++|. ++.+. ..+++|+.|+|++|.+.+ ++
T Consensus 176 l~~~~~~L~~L~Ls~N~---l~~l~~---~~~~L~~L~L~~N~----l~~l~----~~~~~L~~L~Ls~N~L~~-lp--- 237 (622)
T 3g06_A 176 LPMLPSGLQELSVSDNQ---LASLPT---LPSELYKLWAYNNR----LTSLP----ALPSGLKELIVSGNRLTS-LP--- 237 (622)
T ss_dssp CCCCCTTCCEEECCSSC---CSCCCC---CCTTCCEEECCSSC----CSSCC----CCCTTCCEEECCSSCCSC-CC---
T ss_pred CcccCCCCcEEECCCCC---CCCCCC---ccchhhEEECcCCc----ccccC----CCCCCCCEEEccCCccCc-CC---
Confidence 12457899999999885 222332 34789999998762 33221 235889999999998865 33
Q ss_pred cCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCccceeccCcccCccEEEEecCCCCCCCcc
Q 003387 712 EKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAYLKKMPE 782 (824)
Q Consensus 712 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~ 782 (824)
..+++|+.|++++|.+.. ++. .+++|++|+|++|. +..+|..+..+++|+.|++++|+.....|.
T Consensus 238 ~~l~~L~~L~Ls~N~L~~--lp~---~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 238 VLPSELKELMVSGNRLTS--LPM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CCCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CCCCcCcEEECCCCCCCc--CCc---ccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 567999999999998874 332 67899999999986 778888889999999999999986554444
No 67
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.78 E-value=2.4e-21 Score=218.84 Aligned_cols=306 Identities=18% Similarity=0.085 Sum_probs=139.8
Q ss_pred CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCcc-CCccC-CCCC----cceEEeecCCCCC-----ccC
Q 003387 492 DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQ-YPSGI-ENLF----LLRYLKLNIPSLN-----SLP 560 (824)
Q Consensus 492 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~-lp~~i-~~l~----~Lr~L~L~~~~i~-----~lp 560 (824)
++++++|.+.++.........++..+..+++|++|+|++|.+.. .+..+ ..+. +|++|++++|.+. .+|
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 55666666665554210001233445555666666666665541 11111 1122 4666666666555 234
Q ss_pred hhhhhcCCCccEeecCCcccccc-chhhh-----ccccCceecCCCccCCCC---CCC-CCCCCCCCCeeeccCCCcc--
Q 003387 561 SSLLSNLLNLYTLDMPFSYIDHT-ADEFW-----KMNKLRHLNFGSITLPAH---PGK-FCGSLENLNFISALHPCCC-- 628 (824)
Q Consensus 561 ~~i~~~L~~L~~L~L~~~~l~~l-p~~i~-----~L~~L~~L~L~~~~~~~~---~~p-~i~~L~~L~~l~~~~~~~~-- 628 (824)
..+ .++++|++|++++|.+... +..+. .+++|++|++++|.+... .++ .+..+++|+.|+++.+...
T Consensus 107 ~~l-~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 185 (461)
T 1z7x_W 107 STL-RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185 (461)
T ss_dssp HHT-TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHH-ccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence 444 5566666666666554422 11111 134566666655554421 112 3344455555555532110
Q ss_pred -hhh---hc-CCCCccceEEEecccccc--hhhHHHHhccCCCCCeEEEeccC---------------CCCCccEEEeCc
Q 003387 629 -TED---IL-GRLPNLRNLRIRGDLSYN--QSLLSKSLCRLSCLESLKLANES---------------KMPRLSKIVLAE 686 (824)
Q Consensus 629 -~~~---~l-~~l~~L~~L~l~~~~~~~--~~~l~~~l~~l~~L~~L~l~~~~---------------~~~~L~~l~l~~ 686 (824)
... .+ ..+++|+.|+++++.-.. ...++..+..+++|++|++++|. ..++|+.|.+.+
T Consensus 186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~ 265 (461)
T 1z7x_W 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265 (461)
T ss_dssp HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcC
Confidence 011 01 123455555555553111 12344555555555555555532 134555555554
Q ss_pred c--------------CcCCCceEEEEEcccCCCCCccccc-----CCCCCCeEEeeccccCCCe---eeecCCCCCCccE
Q 003387 687 Y--------------LFPHSLTHLSFSNTDLMDDPMPTLE-----KLPLLQVLKLKQNSYSGRK---LTCGSYGFPNLKV 744 (824)
Q Consensus 687 ~--------------~~~~~L~~L~L~~~~l~~~~~~~l~-----~l~~L~~L~L~~~~~~~~~---~~~~~~~~~~L~~ 744 (824)
+ ..+++|++|++++|.+....+..+. ..++|+.|++++|.+.+.. ++.....+++|++
T Consensus 266 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 345 (461)
T 1z7x_W 266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 345 (461)
T ss_dssp SCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCE
T ss_pred CCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccE
Confidence 4 1245566666666554322222221 1245666666655544321 1222234456666
Q ss_pred EeeccCCCCccc-eecc----C-cccCccEEEEecCCCCC----CCccccccCccCcEEEecCCc
Q 003387 745 LHLKSMLWLEEW-TMGN----A-AMPKLECLIINPCAYLK----KMPEQLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 745 L~L~~~~~l~~l-~~~~----~-~lp~L~~L~l~~c~~l~----~lp~~l~~l~~L~~L~l~~c~ 799 (824)
|++++|. +... +..+ . ..++|+.|++++|.... .+|..+..+++|++|++++|+
T Consensus 346 L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 346 LQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp EECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred EEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 6666553 2221 1111 1 14566666666665332 455555556666666666665
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=7.5e-20 Score=195.56 Aligned_cols=261 Identities=13% Similarity=0.074 Sum_probs=196.6
Q ss_pred CcccEEEeeCccCccCCcc-CCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCceecCC
Q 003387 521 KLLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFG 599 (824)
Q Consensus 521 ~~Lr~L~L~~~~i~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~ 599 (824)
..++.++++.+.+...+.. +..+++|++|+|++|.+..+++..++++++|++|++++|.+..++. +..+++|++|+++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence 3456667777776644433 3457799999999999998876545999999999999998887776 8899999999999
Q ss_pred CccCCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCc
Q 003387 600 SITLPAHPGKFCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRL 679 (824)
Q Consensus 600 ~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L 679 (824)
+|.+. .+...++|+.|+++.+...-.. ...+++|+.|+++++. .....+..+..+++|+.|++++| .+
T Consensus 89 ~n~l~-----~l~~~~~L~~L~l~~n~l~~~~-~~~~~~L~~L~l~~N~--l~~~~~~~~~~l~~L~~L~Ls~N----~l 156 (317)
T 3o53_A 89 NNYVQ-----ELLVGPSIETLHAANNNISRVS-CSRGQGKKNIYLANNK--ITMLRDLDEGCRSRVQYLDLKLN----EI 156 (317)
T ss_dssp SSEEE-----EEEECTTCCEEECCSSCCSEEE-ECCCSSCEEEECCSSC--CCSGGGBCTGGGSSEEEEECTTS----CC
T ss_pred CCccc-----cccCCCCcCEEECCCCccCCcC-ccccCCCCEEECCCCC--CCCccchhhhccCCCCEEECCCC----CC
Confidence 98876 2233477888888743322222 4457889999999885 23333446677889999999876 46
Q ss_pred cEEEeCcc-CcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCcccee
Q 003387 680 SKIVLAEY-LFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTM 758 (824)
Q Consensus 680 ~~l~l~~~-~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~ 758 (824)
+.+....+ ..+++|+.|++++|.+... +....+++|+.|++++|.+.+ ++..+..+++|++|++++|. +..+|.
T Consensus 157 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~L~~N~-l~~l~~ 231 (317)
T 3o53_A 157 DTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNK-LVLIEK 231 (317)
T ss_dssp CEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSC-CCEECT
T ss_pred CcccHHHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCc--chhhhcccCcccEEECcCCc-ccchhh
Confidence 66655554 3678999999999987543 344468999999999888764 44456778999999999985 677887
Q ss_pred ccCcccCccEEEEecCCCC-CCCccccccCccCcEEEecCCc
Q 003387 759 GNAAMPKLECLIINPCAYL-KKMPEQLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 759 ~~~~lp~L~~L~l~~c~~l-~~lp~~l~~l~~L~~L~l~~c~ 799 (824)
.+..+++|+.|++++|+.. ..+|..+..+++|+.+++.+|+
T Consensus 232 ~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence 7888999999999999876 5677778888888888887665
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=2.4e-19 Score=202.99 Aligned_cols=244 Identities=13% Similarity=0.092 Sum_probs=155.6
Q ss_pred cCCccCCC----CCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCceecCCCccCCCCCCCC
Q 003387 535 QYPSGIEN----LFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKF 610 (824)
Q Consensus 535 ~lp~~i~~----l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~~~p~ 610 (824)
.+|..+.. +++|++|+|++|.+..+++..|+++++|++|+|++|.+...++ ++.+++|++|++++|.+.. +|
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~--l~- 96 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE--LL- 96 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE--EE-
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC--CC-
Confidence 44554444 4489999999999998876545999999999999999987776 9999999999999998762 22
Q ss_pred CCCCCCCCeeeccCCCcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCccC-c
Q 003387 611 CGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYL-F 689 (824)
Q Consensus 611 i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~-~ 689 (824)
..++|+.|+++.+...-.. ...+++|+.|+++++. .....+..++++++|+.|++++| .+.......+. .
T Consensus 97 --~~~~L~~L~L~~N~l~~~~-~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~Ls~N----~l~~~~~~~l~~~ 167 (487)
T 3oja_A 97 --VGPSIETLHAANNNISRVS-CSRGQGKKNIYLANNK--ITMLRDLDEGCRSRVQYLDLKLN----EIDTVNFAELAAS 167 (487)
T ss_dssp --ECTTCCEEECCSSCCCCEE-ECCCSSCEEEECCSSC--CCSGGGBCGGGGSSEEEEECTTS----CCCEEEGGGGGGG
T ss_pred --CCCCcCEEECcCCcCCCCC-ccccCCCCEEECCCCC--CCCCCchhhcCCCCCCEEECCCC----CCCCcChHHHhhh
Confidence 2356777776633222111 3345667777777664 22333445556666666666655 35544444432 4
Q ss_pred CCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCccceeccCcccCccEE
Q 003387 690 PHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECL 769 (824)
Q Consensus 690 ~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L 769 (824)
+++|+.|+|++|.+.+. +....+++|+.|+|++|.+.+ ++..+..+++|+.|+|++|. +..+|..+..+++|+.|
T Consensus 168 l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L 242 (487)
T 3oja_A 168 SDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHF 242 (487)
T ss_dssp TTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEE
T ss_pred CCcccEEecCCCccccc--cccccCCCCCEEECCCCCCCC--CCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEE
Confidence 56666666666665432 233356666666666666553 33335556666666666654 45566556666666666
Q ss_pred EEecCCCC-CCCccccccCccCcEEEec
Q 003387 770 IINPCAYL-KKMPEQLWYIKSLNKFDCW 796 (824)
Q Consensus 770 ~l~~c~~l-~~lp~~l~~l~~L~~L~l~ 796 (824)
++++|+.. ..+|..+..+++|+.+.+.
T Consensus 243 ~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred EcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 66666654 3445555556665555543
No 70
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.77 E-value=3.4e-20 Score=209.43 Aligned_cols=304 Identities=16% Similarity=0.061 Sum_probs=216.2
Q ss_pred CceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCc-----cCCccCCCCCcceEEeecCCCCCc-cChhhhhc
Q 003387 493 SQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLI-----QYPSGIENLFLLRYLKLNIPSLNS-LPSSLLSN 566 (824)
Q Consensus 493 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~-----~lp~~i~~l~~Lr~L~L~~~~i~~-lp~~i~~~ 566 (824)
+++++|.+.++... .......+..+++|++|+|++|.+. .+|..+..+++|++|+|++|.+.. .+..++..
T Consensus 3 ~~l~~L~Ls~~~l~---~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 79 (461)
T 1z7x_W 3 LDIQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG 79 (461)
T ss_dssp EEEEEEEEESCCCC---HHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred ccceehhhhhcccC---chhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHH
Confidence 57888888777653 3345566899999999999999987 567888899999999999999875 34444355
Q ss_pred CC----CccEeecCCcccc-----ccchhhhccccCceecCCCccCCCC---CCC-C-CCCCCCCCeeeccCCCc-----
Q 003387 567 LL----NLYTLDMPFSYID-----HTADEFWKMNKLRHLNFGSITLPAH---PGK-F-CGSLENLNFISALHPCC----- 627 (824)
Q Consensus 567 L~----~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~L~~~~~~~~---~~p-~-i~~L~~L~~l~~~~~~~----- 627 (824)
+. +|++|++++|.+. .+|..+..+++|++|++++|.+... .+. . ...+++|+.|+++.+..
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 66 7999999999887 5688899999999999999987532 111 1 23356799999884322
Q ss_pred -chhhhcCCCCccceEEEecccccc--hhhHHHHhc-cCCCCCeEEEeccC--------------CCCCccEEEeCcc--
Q 003387 628 -CTEDILGRLPNLRNLRIRGDLSYN--QSLLSKSLC-RLSCLESLKLANES--------------KMPRLSKIVLAEY-- 687 (824)
Q Consensus 628 -~~~~~l~~l~~L~~L~l~~~~~~~--~~~l~~~l~-~l~~L~~L~l~~~~--------------~~~~L~~l~l~~~-- 687 (824)
.+...+..+++|+.|+++++.-.. ...+...+. ..++|++|++++|. .+++|+.|.++++
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 239 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC
Confidence 123346778999999999885111 122223332 35699999999853 3478889988876
Q ss_pred -------------CcCCCceEEEEEcccCCCC----CcccccCCCCCCeEEeeccccCCCee---eec-CCCCCCccEEe
Q 003387 688 -------------LFPHSLTHLSFSNTDLMDD----PMPTLEKLPLLQVLKLKQNSYSGRKL---TCG-SYGFPNLKVLH 746 (824)
Q Consensus 688 -------------~~~~~L~~L~L~~~~l~~~----~~~~l~~l~~L~~L~L~~~~~~~~~~---~~~-~~~~~~L~~L~ 746 (824)
..+++|++|++++|.+... .+..+..+++|++|++++|.+.+... ... ....++|++|+
T Consensus 240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 319 (461)
T 1z7x_W 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeE
Confidence 1468899999999987643 35556678999999999887643211 111 12346899999
Q ss_pred eccCCCCcc----ceeccCcccCccEEEEecCCCCCCCccc----ccc-CccCcEEEecCCc
Q 003387 747 LKSMLWLEE----WTMGNAAMPKLECLIINPCAYLKKMPEQ----LWY-IKSLNKFDCWWPQ 799 (824)
Q Consensus 747 L~~~~~l~~----l~~~~~~lp~L~~L~l~~c~~l~~lp~~----l~~-l~~L~~L~l~~c~ 799 (824)
+++|..-.. ++..+..+++|+.|++++|......+.. +.. .++|+.|++++|.
T Consensus 320 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred cCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 999873222 3344556799999999999643322222 222 6799999999997
No 71
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=6.9e-19 Score=185.12 Aligned_cols=216 Identities=22% Similarity=0.204 Sum_probs=164.3
Q ss_pred CCCcccccccCCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccC-CccCCCCCcceEEeecCCC-CCcc
Q 003387 482 EGDFACLDDYDSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPS-LNSL 559 (824)
Q Consensus 482 ~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~-i~~l 559 (824)
.....+|..+.++++.|.+.++... ...+..|..+++|++|++++|.++.+ |..+..+++|++|++++|. +..+
T Consensus 21 ~~l~~ip~~~~~~l~~L~l~~n~i~----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~ 96 (285)
T 1ozn_A 21 QGLQAVPVGIPAASQRIFLHGNRIS----HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96 (285)
T ss_dssp SCCSSCCTTCCTTCSEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC
T ss_pred CCcccCCcCCCCCceEEEeeCCcCC----ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc
Confidence 3344455555789999999988764 34556789999999999999999866 7789999999999999997 8888
Q ss_pred ChhhhhcCCCccEeecCCcccccc-chhhhccccCceecCCCccCCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCc
Q 003387 560 PSSLLSNLLNLYTLDMPFSYIDHT-ADEFWKMNKLRHLNFGSITLPAHPGKFCGSLENLNFISALHPCCCTEDILGRLPN 638 (824)
Q Consensus 560 p~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~ 638 (824)
++..+.++++|++|++++|.+..+ |..+..+++|++|++++|.+.. ++ ...++.+++
T Consensus 97 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~--------------------~~~~~~l~~ 154 (285)
T 1ozn_A 97 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA--LP--------------------DDTFRDLGN 154 (285)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CC--------------------TTTTTTCTT
T ss_pred CHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc--cC--------------------HhHhccCCC
Confidence 554449999999999999999888 4568899999999999998762 22 111445556
Q ss_pred cceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCC
Q 003387 639 LRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQ 718 (824)
Q Consensus 639 L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~ 718 (824)
|+.|+++++. .....+..+..+++|+.|++++| .+..+....+..+++|+.|++++|.+.+..+..+..+++|+
T Consensus 155 L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n----~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 228 (285)
T 1ozn_A 155 LTHLFLHGNR--ISSVPERAFRGLHSLDRLLLHQN----RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ 228 (285)
T ss_dssp CCEEECCSSC--CCEECTTTTTTCTTCCEEECCSS----CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred ccEEECCCCc--ccccCHHHhcCccccCEEECCCC----cccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccC
Confidence 6666666553 11111224566777777777765 35555555567788999999999998876667789999999
Q ss_pred eEEeeccccCC
Q 003387 719 VLKLKQNSYSG 729 (824)
Q Consensus 719 ~L~L~~~~~~~ 729 (824)
.|++++|.+..
T Consensus 229 ~L~l~~N~~~c 239 (285)
T 1ozn_A 229 YLRLNDNPWVC 239 (285)
T ss_dssp EEECCSSCEEC
T ss_pred EEeccCCCccC
Confidence 99999988754
No 72
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.75 E-value=6.4e-19 Score=205.68 Aligned_cols=305 Identities=16% Similarity=0.058 Sum_probs=208.8
Q ss_pred CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCccCCCCCcceEEeecCCCC----CccChhhhhcC
Q 003387 492 DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSL----NSLPSSLLSNL 567 (824)
Q Consensus 492 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i----~~lp~~i~~~L 567 (824)
+++|++|.+..+.........+...+..+++|++|++++|.+..+|..+..+++|++|+++.+.. ...+..+ ..+
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~~ 269 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL-VFP 269 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC-CCC
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHh-hcc
Confidence 66777777766554321223455566667777777777777666666667777777777764321 2334444 677
Q ss_pred CCccEeecCCccccccchhhhccccCceecCCCccCCCCCCC-CCCCCCCCCeeeccCC--CcchhhhcCCCCccceEEE
Q 003387 568 LNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGK-FCGSLENLNFISALHP--CCCTEDILGRLPNLRNLRI 644 (824)
Q Consensus 568 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~~~p-~i~~L~~L~~l~~~~~--~~~~~~~l~~l~~L~~L~l 644 (824)
++|+.|+++++....+|..+..+++|++|++++|.+....++ .++.+++|+.|++... ...+......+++|++|++
T Consensus 270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L 349 (592)
T 3ogk_B 270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI 349 (592)
T ss_dssp TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred ccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEe
Confidence 777777777776677888888899999999999885432332 4678888999988621 1223343467889999999
Q ss_pred ec----------ccccchhhHHHHhccCCCCCeEEEeccC-----------CCCCccEEEeCcc----------------
Q 003387 645 RG----------DLSYNQSLLSKSLCRLSCLESLKLANES-----------KMPRLSKIVLAEY---------------- 687 (824)
Q Consensus 645 ~~----------~~~~~~~~l~~~l~~l~~L~~L~l~~~~-----------~~~~L~~l~l~~~---------------- 687 (824)
++ +.......+......+++|++|++..+. .+++|+.|.+.++
T Consensus 350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~ 429 (592)
T 3ogk_B 350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR 429 (592)
T ss_dssp ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHH
T ss_pred ecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHH
Confidence 94 4333444556666678999999996532 3778999998631
Q ss_pred ---CcCCCceEEEEEccc--CCCCCccccc-CCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCcc--ceec
Q 003387 688 ---LFPHSLTHLSFSNTD--LMDDPMPTLE-KLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEE--WTMG 759 (824)
Q Consensus 688 ---~~~~~L~~L~L~~~~--l~~~~~~~l~-~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~--l~~~ 759 (824)
..+++|++|+++.|. +++..+..++ .+++|+.|++++|.+.+..+.....++++|++|+|++|. +.. ++..
T Consensus 430 ~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~ 508 (592)
T 3ogk_B 430 SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAA 508 (592)
T ss_dssp HHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHH
T ss_pred HHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHH
Confidence 237899999998764 4444444444 489999999998887765555556789999999999998 442 3333
Q ss_pred cCcccCccEEEEecCCCCCC-CccccccCccCcEEEecCC
Q 003387 760 NAAMPKLECLIINPCAYLKK-MPEQLWYIKSLNKFDCWWP 798 (824)
Q Consensus 760 ~~~lp~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~c 798 (824)
...+|+|+.|++++|+.... +..-...+|.|....+...
T Consensus 509 ~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 509 VTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 45789999999999994432 1222345677777766665
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.74 E-value=4e-19 Score=189.43 Aligned_cols=82 Identities=20% Similarity=0.196 Sum_probs=55.7
Q ss_pred ccEEEeeCccCc--cCCccCC-------CCCcceEEeecCCCCC-ccChhhh-hcCCCccEeecCCccccccchhhhcc-
Q 003387 523 LRVLDLGSLVLI--QYPSGIE-------NLFLLRYLKLNIPSLN-SLPSSLL-SNLLNLYTLDMPFSYIDHTADEFWKM- 590 (824)
Q Consensus 523 Lr~L~L~~~~i~--~lp~~i~-------~l~~Lr~L~L~~~~i~-~lp~~i~-~~L~~L~~L~L~~~~l~~lp~~i~~L- 590 (824)
|++|+|+++.+. .+|..+. ++++|++|+|++|.+. .+|..++ +.+++|++|++++|.+..+|..++.+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 144 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence 667777777664 4555554 5777777777777776 4555532 66777777777777777666666666
Q ss_pred ----ccCceecCCCccCC
Q 003387 591 ----NKLRHLNFGSITLP 604 (824)
Q Consensus 591 ----~~L~~L~L~~~~~~ 604 (824)
++|++|++++|.+.
T Consensus 145 ~~~~~~L~~L~L~~N~l~ 162 (312)
T 1wwl_A 145 QWLKPGLKVLSIAQAHSL 162 (312)
T ss_dssp TTCCTTCCEEEEESCSCC
T ss_pred HhhcCCCcEEEeeCCCCc
Confidence 77777777777664
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.74 E-value=4.9e-20 Score=196.54 Aligned_cols=250 Identities=16% Similarity=0.112 Sum_probs=144.4
Q ss_pred hhcccCcccEEEeeCccCccCCccCCCCCcceEEeecCCCCC--ccChhhhh-------cCCCccEeecCCcccc-ccch
Q 003387 516 FCGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLN--SLPSSLLS-------NLLNLYTLDMPFSYID-HTAD 585 (824)
Q Consensus 516 ~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~--~lp~~i~~-------~L~~L~~L~L~~~~l~-~lp~ 585 (824)
++...+.|+.|++++|.+ .+|..+... |++|+|+++.+. .+|..+ . ++++|++|++++|.+. .+|.
T Consensus 38 ~~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRI-LFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHH-HHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EEccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHH-HHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 455666777777777777 677666543 777777777764 455554 4 6778888888877776 4666
Q ss_pred hh--hccccCceecCCCccCCCCCCC-CCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEecccccchhhHHHHhccC
Q 003387 586 EF--WKMNKLRHLNFGSITLPAHPGK-FCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRL 662 (824)
Q Consensus 586 ~i--~~L~~L~~L~L~~~~~~~~~~p-~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l 662 (824)
.+ ..+++|++|++++|.+... | .++.+. ...+++|+.|+++++. .....+..+.++
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~-----------------~~~~~~L~~L~L~~N~--l~~~~~~~~~~l 172 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR--DAWLAELQ-----------------QWLKPGLKVLSIAQAH--SLNFSCEQVRVF 172 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS--SSHHHHHH-----------------TTCCTTCCEEEEESCS--CCCCCTTTCCCC
T ss_pred HHHHhcCCCccEEEccCCCCcch--hHHHHHHH-----------------HhhcCCCcEEEeeCCC--CccchHHHhccC
Confidence 55 7777888888877777631 3 232220 0001455555555443 122222344445
Q ss_pred CCCCeEEEeccCCCCCccEE-E-eCcc--CcCCCceEEEEEcccCCCC--Cc-ccccCCCCCCeEEeeccccCCCeeeec
Q 003387 663 SCLESLKLANESKMPRLSKI-V-LAEY--LFPHSLTHLSFSNTDLMDD--PM-PTLEKLPLLQVLKLKQNSYSGRKLTCG 735 (824)
Q Consensus 663 ~~L~~L~l~~~~~~~~L~~l-~-l~~~--~~~~~L~~L~L~~~~l~~~--~~-~~l~~l~~L~~L~L~~~~~~~~~~~~~ 735 (824)
++|++|++++|. +... . +... ..+++|++|++++|.+... .+ ..+.++++|+.|++++|.+.+......
T Consensus 173 ~~L~~L~Ls~N~----l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 248 (312)
T 1wwl_A 173 PALSTLDLSDNP----ELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248 (312)
T ss_dssp SSCCEEECCSCT----TCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred CCCCEEECCCCC----cCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence 555555555431 1100 0 0001 3445666666666665421 11 223466777777777776665332223
Q ss_pred CCCCCCccEEeeccCCCCccceeccCcccCccEEEEecCCCCCCCccccccCccCcEEEecCCc
Q 003387 736 SYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAYLKKMPEQLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 736 ~~~~~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 799 (824)
...+++|++|++++|. ++.+|.... ++|+.|++++|. ++.+|. +..+++|+.|++++++
T Consensus 249 ~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNR-LDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSSC-CCSCCC-TTTSCEEEEEECTTCT
T ss_pred hhhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCCC-CCCChh-HhhCCCCCEEeccCCC
Confidence 3456777777777765 456655443 777788887775 445565 6777778888777775
No 75
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.72 E-value=5.5e-19 Score=206.35 Aligned_cols=323 Identities=13% Similarity=0.069 Sum_probs=205.1
Q ss_pred CCeeEEEEEecCCCccccccc---CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCcc-----CCccCCC
Q 003387 471 KKAKRLNAVEREGDFACLDDY---DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQ-----YPSGIEN 542 (824)
Q Consensus 471 ~~~r~lsl~~~~~~~~~~~~~---~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~-----lp~~i~~ 542 (824)
.+++++.+..+......+..+ +++|++|.+.++.... ...+...+..+++|++|+|++|.++. ++.....
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~--~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS--TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE--HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC--HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 467888888433222222233 7899999998885321 22356677789999999999998652 3344457
Q ss_pred CCcceEEeecCCC--CC--ccChhhhhcCCCccEeecCCc-cccccchhhhccccCceecCCCccCC-------------
Q 003387 543 LFLLRYLKLNIPS--LN--SLPSSLLSNLLNLYTLDMPFS-YIDHTADEFWKMNKLRHLNFGSITLP------------- 604 (824)
Q Consensus 543 l~~Lr~L~L~~~~--i~--~lp~~i~~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~L~~~~~~------------- 604 (824)
+++|++|++++|. +. .++.-+ .++++|++|++++| .+..+|..+.++++|++|+++.+...
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~-~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLV-TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHH-HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHH-HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 8899999999986 22 233323 67899999999999 77788888889999999987655310
Q ss_pred -------------C---CCCC-CCCCCCCCCeeeccCCCc---chhhhcCCCCccceEEEecccccchhhHHHHhccCCC
Q 003387 605 -------------A---HPGK-FCGSLENLNFISALHPCC---CTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSC 664 (824)
Q Consensus 605 -------------~---~~~p-~i~~L~~L~~l~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~ 664 (824)
. ..+| .+..+++|+.|+++.+.. .+...+..+++|++|++.++. ....++.....+++
T Consensus 262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~--~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI--EDAGLEVLASTCKD 339 (594)
T ss_dssp HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGG--HHHHHHHHHHHCTT
T ss_pred hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCcc--CHHHHHHHHHhCCC
Confidence 0 0111 112456677777763321 122335577888888887762 33444444556778
Q ss_pred CCeEEEec---------cC-----------CCCCccEEEeCcc-----------CcCCCceEEEEE--c---c-cCCCCC
Q 003387 665 LESLKLAN---------ES-----------KMPRLSKIVLAEY-----------LFPHSLTHLSFS--N---T-DLMDDP 707 (824)
Q Consensus 665 L~~L~l~~---------~~-----------~~~~L~~l~l~~~-----------~~~~~L~~L~L~--~---~-~l~~~~ 707 (824)
|++|++.. +. .+++|+.|.+... ..+++|+.|+++ + | .++...
T Consensus 340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence 88887732 10 2567777755332 246788888887 2 2 332211
Q ss_pred c-----ccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCccceecc-CcccCccEEEEecCCCCCCC-
Q 003387 708 M-----PTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGN-AAMPKLECLIINPCAYLKKM- 780 (824)
Q Consensus 708 ~-----~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~-~~lp~L~~L~l~~c~~l~~l- 780 (824)
. ..+..+++|+.|++++ .+.+..+......+++|++|+|++|.........+ ..+|+|+.|++++|+.....
T Consensus 420 ~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~ 498 (594)
T 2p1m_B 420 LDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL 498 (594)
T ss_dssp THHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHH
T ss_pred hhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHH
Confidence 1 1245677888888864 33332222112237889999999887322222222 46899999999999973222
Q ss_pred ccccccCccCcEEEecCCc
Q 003387 781 PEQLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 781 p~~l~~l~~L~~L~l~~c~ 799 (824)
+..+..+++|+.|++++|+
T Consensus 499 ~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 499 LANASKLETMRSLWMSSCS 517 (594)
T ss_dssp HHTGGGGGGSSEEEEESSC
T ss_pred HHHHHhCCCCCEEeeeCCC
Confidence 2345678999999999998
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.70 E-value=2.9e-17 Score=171.25 Aligned_cols=85 Identities=21% Similarity=0.226 Sum_probs=60.3
Q ss_pred hcccCcccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchh-hhccccCce
Q 003387 517 CGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADE-FWKMNKLRH 595 (824)
Q Consensus 517 ~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~ 595 (824)
...++.|+.|+++++.+..++ .+..+++|++|++++|.+..++ .+ +++++|++|++++|.+..+|.. +..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-AL-KELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GG-TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hh-cCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 345677777777777776655 3667777777777777777654 44 7777777777777777776654 567777777
Q ss_pred ecCCCccCC
Q 003387 596 LNFGSITLP 604 (824)
Q Consensus 596 L~L~~~~~~ 604 (824)
|++++|.+.
T Consensus 114 L~L~~n~l~ 122 (272)
T 3rfs_A 114 LVLVENQLQ 122 (272)
T ss_dssp EECTTSCCC
T ss_pred EECCCCcCC
Confidence 777777664
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=5.2e-17 Score=172.53 Aligned_cols=193 Identities=20% Similarity=0.209 Sum_probs=104.3
Q ss_pred cccCcccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCceec
Q 003387 518 GMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLN 597 (824)
Q Consensus 518 ~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 597 (824)
..+++|++|++++|.+..+| .+..+++|++|++++|.+..++. + .++++|++|++++|.+..+| .+..+++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~-~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-L-KNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G-TTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred HHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-H-ccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence 34566666666666666655 46666666666666666666665 4 66666666666666666665 366666666666
Q ss_pred CCCccCCCCCCCCCCCCCCCCeeeccCC-CcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCC
Q 003387 598 FGSITLPAHPGKFCGSLENLNFISALHP-CCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKM 676 (824)
Q Consensus 598 L~~~~~~~~~~p~i~~L~~L~~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~ 676 (824)
+++|.+. .++.++.+++|+.|+++.+ -..+.. +..+++|+.|+++++. ...++. +..+++|+.|++++|.
T Consensus 114 l~~n~l~--~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~---l~~~~~-l~~l~~L~~L~l~~n~-- 184 (308)
T 1h6u_A 114 LTSTQIT--DVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ---VSDLTP-LANLSKLTTLKADDNK-- 184 (308)
T ss_dssp CTTSCCC--CCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC---CCCCGG-GTTCTTCCEEECCSSC--
T ss_pred CCCCCCC--CchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc---CCCChh-hcCCCCCCEEECCCCc--
Confidence 6666654 2333444444444444421 111222 5555666666666553 111221 4555556666555441
Q ss_pred CCccEEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCC
Q 003387 677 PRLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSG 729 (824)
Q Consensus 677 ~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 729 (824)
++.+. ....+++|++|++++|.+.+.. .+..+++|+.|++++|.+..
T Consensus 185 --l~~~~--~l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 --ISDIS--PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp --CCCCG--GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred --cCcCh--hhcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 22211 1234555666666666554322 25556666666666555543
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=1.2e-16 Score=168.13 Aligned_cols=200 Identities=20% Similarity=0.154 Sum_probs=137.6
Q ss_pred hcccCcccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCcee
Q 003387 517 CGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHL 596 (824)
Q Consensus 517 ~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 596 (824)
+.++++|+.++++++.++.+|..+. .+|++|+|++|.+..++...|.++++|++|++++|.+..+|.. +.+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 5677889999999999998888775 5899999999999887765558999999999999988888764 788999999
Q ss_pred cCCCccCCCCCCC-CCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCC
Q 003387 597 NFGSITLPAHPGK-FCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESK 675 (824)
Q Consensus 597 ~L~~~~~~~~~~p-~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~ 675 (824)
++++|.+. .+| . +..+++|+.|+++++. .....+..+.++++|+.|++++|
T Consensus 83 ~Ls~N~l~--~l~~~----------------------~~~l~~L~~L~l~~N~--l~~l~~~~~~~l~~L~~L~L~~N-- 134 (290)
T 1p9a_G 83 DLSHNQLQ--SLPLL----------------------GQTLPALTVLDVSFNR--LTSLPLGALRGLGELQELYLKGN-- 134 (290)
T ss_dssp ECCSSCCS--SCCCC----------------------TTTCTTCCEEECCSSC--CCCCCSSTTTTCTTCCEEECTTS--
T ss_pred ECCCCcCC--cCchh----------------------hccCCCCCEEECCCCc--CcccCHHHHcCCCCCCEEECCCC--
Confidence 99988775 333 2 3445555555555542 11111233445556666666554
Q ss_pred CCCccEEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCC
Q 003387 676 MPRLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSML 751 (824)
Q Consensus 676 ~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 751 (824)
.++.+....+..+++|+.|+|++|.+....+..+..+++|+.|++++|.+.. ++.....+++|+.|.|++|+
T Consensus 135 --~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~--ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 135 --ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp --CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCCCSEEECCSCC
T ss_pred --CCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc--cChhhcccccCCeEEeCCCC
Confidence 2333332333456777777887777765555556777788888887777653 44445556677777777765
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.70 E-value=8.7e-17 Score=167.48 Aligned_cols=82 Identities=24% Similarity=0.220 Sum_probs=59.9
Q ss_pred CcccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchh-hhccccCceecCC
Q 003387 521 KLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADE-FWKMNKLRHLNFG 599 (824)
Q Consensus 521 ~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~ 599 (824)
..++.++++++.++.+|..+. .+|++|++++|.+..+|...|.++++|++|++++|.+..+|.. +..+++|++|+++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 346777888777777776654 4777888888877777764447778888888887777777765 4667788888777
Q ss_pred CccCC
Q 003387 600 SITLP 604 (824)
Q Consensus 600 ~~~~~ 604 (824)
+|.+.
T Consensus 94 ~n~l~ 98 (270)
T 2o6q_A 94 DNKLQ 98 (270)
T ss_dssp SSCCC
T ss_pred CCcCC
Confidence 77664
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.69 E-value=3.9e-18 Score=183.93 Aligned_cols=257 Identities=16% Similarity=0.130 Sum_probs=170.0
Q ss_pred ceeEeeccCCCCCCCCcchhHhhhccc--CcccEEEeeCccCccCCccCCCCCcceEEeecCCCCCc--cChhhhhcCCC
Q 003387 494 QLHSLLCCSPETRHLDPIDWEKFCGMF--KLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNS--LPSSLLSNLLN 569 (824)
Q Consensus 494 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~--~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~--lp~~i~~~L~~ 569 (824)
.++.+.+.++... +..+..+ +.+++|+++++.+...+..+..+++|++|++++|.+.. +|..+ .++++
T Consensus 48 ~~~~l~l~~~~~~-------~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~-~~~~~ 119 (336)
T 2ast_B 48 LWQTLDLTGKNLH-------PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL-SQCSK 119 (336)
T ss_dssp TSSEEECTTCBCC-------HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHH-TTBCC
T ss_pred hheeeccccccCC-------HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHH-hhCCC
Confidence 3566666554432 3445555 77888888888877666667778888888888877663 55555 78888
Q ss_pred ccEeecCCcccc-ccchhhhccccCceecCCCc-cCCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEecc
Q 003387 570 LYTLDMPFSYID-HTADEFWKMNKLRHLNFGSI-TLPAHPGKFCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGD 647 (824)
Q Consensus 570 L~~L~L~~~~l~-~lp~~i~~L~~L~~L~L~~~-~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 647 (824)
|++|++++|.+. ..|..++++++|++|++++| .+. ...+...+..+++|+.|+++++
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~---------------------~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS---------------------EFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCC---------------------HHHHHHHHHHCTTCCEEECCCC
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCC---------------------HHHHHHHHhcCCCCCEEcCCCC
Confidence 888888888665 45666777888888888777 332 2223344778899999999988
Q ss_pred cccchhhHHHHhccCC-CCCeEEEeccCCCCCccEEEe-CccCcCCCceEEEEEccc-CCCCCcccccCCCCCCeEEeec
Q 003387 648 LSYNQSLLSKSLCRLS-CLESLKLANESKMPRLSKIVL-AEYLFPHSLTHLSFSNTD-LMDDPMPTLEKLPLLQVLKLKQ 724 (824)
Q Consensus 648 ~~~~~~~l~~~l~~l~-~L~~L~l~~~~~~~~L~~l~l-~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L~L~~ 724 (824)
.......++..+..++ +|++|+++++. ..+..-.+ .....+++|++|++++|. +++..+..++++++|+.|++++
T Consensus 179 ~~l~~~~~~~~~~~l~~~L~~L~l~~~~--~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 256 (336)
T 2ast_B 179 FDFTEKHVQVAVAHVSETITQLNLSGYR--KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 256 (336)
T ss_dssp TTCCHHHHHHHHHHSCTTCCEEECCSCG--GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred CCcChHHHHHHHHhcccCCCEEEeCCCc--ccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCC
Confidence 4333445777788888 99999998651 01111000 112457889999999988 6666777888899999999988
Q ss_pred cccCCCeeeecCCCCCCccEEeeccCCCCccceeccCcc-cCccEEEEecCCCCCCCccccc
Q 003387 725 NSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAM-PKLECLIINPCAYLKKMPEQLW 785 (824)
Q Consensus 725 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l-p~L~~L~l~~c~~l~~lp~~l~ 785 (824)
|..........+..+++|++|++++| +..- ....+ .+|+.|++++|......|..+.
T Consensus 257 ~~~~~~~~~~~l~~~~~L~~L~l~~~--i~~~--~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 257 CYDIIPETLLELGEIPTLKTLQVFGI--VPDG--TLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp CTTCCGGGGGGGGGCTTCCEEECTTS--SCTT--CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred CCCCCHHHHHHHhcCCCCCEEeccCc--cCHH--HHHHHHhhCcceEEecccCccccCCccc
Confidence 75222221223566889999999987 2211 11223 3466666877776665665544
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=1.2e-16 Score=167.02 Aligned_cols=200 Identities=22% Similarity=0.220 Sum_probs=109.8
Q ss_pred cccEEEeeCccCccCCc-cCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccc-hhhhccccCceecCC
Q 003387 522 LLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTA-DEFWKMNKLRHLNFG 599 (824)
Q Consensus 522 ~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~ 599 (824)
.|++|++++|.++.+|. .+.++++|++|++++|.+..++...+.++++|++|++++|.+..++ ..+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45566666665554443 4555666666666666655555433355666666666666555554 335556666666665
Q ss_pred CccCCCCCCC-CCCCCCCCCeeeccCCC---cchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCC----eEEEe
Q 003387 600 SITLPAHPGK-FCGSLENLNFISALHPC---CCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLE----SLKLA 671 (824)
Q Consensus 600 ~~~~~~~~~p-~i~~L~~L~~l~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~----~L~l~ 671 (824)
+|.+.. ..+ .++++++|+.|+++.+. ..++..+..+++|+.|+++++. .....+..+..+++|+ +|+++
T Consensus 109 ~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 109 ETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK--IQSIYCTDLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp TSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC--CCEECGGGGHHHHTCTTCCEEEECC
T ss_pred CCCccc-cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC--CCcCCHHHhhhhhhccccceeeecC
Confidence 555542 111 34555555555554211 1122336777778888777764 1111112233333333 66666
Q ss_pred ccCCCCCccEEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCC
Q 003387 672 NESKMPRLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSG 729 (824)
Q Consensus 672 ~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 729 (824)
+| .++.+....+ ...+|+.|++++|.+....+..++.+++|+.|++++|.+..
T Consensus 186 ~n----~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 186 LN----PMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp SS----CCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CC----cccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 55 3444432222 23368888888887766555566778888888888776653
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.69 E-value=1.8e-17 Score=178.72 Aligned_cols=226 Identities=18% Similarity=0.164 Sum_probs=119.7
Q ss_pred CcccEEEeeCccCccCCccCCCC--CcceEEeecCCCCCccChhhhhcCCCccEeecCCccccc--cchhhhccccCcee
Q 003387 521 KLLRVLDLGSLVLIQYPSGIENL--FLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDH--TADEFWKMNKLRHL 596 (824)
Q Consensus 521 ~~Lr~L~L~~~~i~~lp~~i~~l--~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L 596 (824)
..++.|+++++.+. |..+..+ .++++|+++++.+...+..+ .++++|++|++++|.+.. +|..+..+++|++|
T Consensus 47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 34566666666554 3334444 56666666666666555555 566666666666665542 55556666666666
Q ss_pred cCCCccCCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCC
Q 003387 597 NFGSITLPAHPGKFCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKM 676 (824)
Q Consensus 597 ~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~ 676 (824)
++++|.+. ...+.. +..+++|++|++++|.......++..+.++++|++|+++++.
T Consensus 124 ~L~~~~l~---------------------~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~-- 179 (336)
T 2ast_B 124 SLEGLRLS---------------------DPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF-- 179 (336)
T ss_dssp ECTTCBCC---------------------HHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT--
T ss_pred eCcCcccC---------------------HHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC--
Confidence 66666543 122222 555666666666665322333455556666666666666431
Q ss_pred CCccEEEe-CccCcCC-CceEEEEEcc--cCC-CCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCC
Q 003387 677 PRLSKIVL-AEYLFPH-SLTHLSFSNT--DLM-DDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSML 751 (824)
Q Consensus 677 ~~L~~l~l-~~~~~~~-~L~~L~L~~~--~l~-~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 751 (824)
.++...+ .....++ +|++|++++| .+. ...+..+.++++|+.|++++|..........+..+++|++|++++|.
T Consensus 180 -~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 180 -DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp -TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred -CcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 1221100 1113445 6666666666 232 12234445566666666666652222223344556666666666664
Q ss_pred CCccc-eeccCcccCccEEEEecC
Q 003387 752 WLEEW-TMGNAAMPKLECLIINPC 774 (824)
Q Consensus 752 ~l~~l-~~~~~~lp~L~~L~l~~c 774 (824)
.+... ...++.+|+|+.|++++|
T Consensus 259 ~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 259 DIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCHHHHHHHhcCCCCCEEeccCc
Confidence 22211 113445666666666666
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=1.1e-16 Score=167.43 Aligned_cols=78 Identities=19% Similarity=0.261 Sum_probs=66.1
Q ss_pred EEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccch-hhhccccCceecCCCccC
Q 003387 525 VLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTAD-EFWKMNKLRHLNFGSITL 603 (824)
Q Consensus 525 ~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~ 603 (824)
+.+..+..+..+|..+. ++|++|++++|.+..++...+.++++|++|++++|.+..++. .+.++++|++|++++|.+
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 45566666778888775 589999999999999887444999999999999999998875 588999999999999987
Q ss_pred C
Q 003387 604 P 604 (824)
Q Consensus 604 ~ 604 (824)
.
T Consensus 89 ~ 89 (276)
T 2z62_A 89 Q 89 (276)
T ss_dssp C
T ss_pred C
Confidence 5
No 84
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.68 E-value=6.5e-18 Score=197.19 Aligned_cols=304 Identities=16% Similarity=0.110 Sum_probs=184.5
Q ss_pred CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCcc--Cc--cCCccCCCCCcceEEeecCC-CCCccChhhhhc
Q 003387 492 DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLV--LI--QYPSGIENLFLLRYLKLNIP-SLNSLPSSLLSN 566 (824)
Q Consensus 492 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~--i~--~lp~~i~~l~~Lr~L~L~~~-~i~~lp~~i~~~ 566 (824)
+++|++|.+.++.........+..+...+++|++|++++|. +. .++..+..+++|++|++++| .+..+|..+ .+
T Consensus 155 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~-~~ 233 (594)
T 2p1m_B 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLL-QR 233 (594)
T ss_dssp CTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHH-HH
T ss_pred CCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHH-hc
Confidence 55666666655543211112233344455566666665554 21 12222233455566665554 233343333 45
Q ss_pred CCCccEeec-------------------------------CCccccccchhhhccccCceecCCCccCCCCCCC-CCCCC
Q 003387 567 LLNLYTLDM-------------------------------PFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGK-FCGSL 614 (824)
Q Consensus 567 L~~L~~L~L-------------------------------~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~~~p-~i~~L 614 (824)
+++|+.|++ .+.....+|..+..+++|++|++++|.+....++ .+.++
T Consensus 234 ~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~ 313 (594)
T 2p1m_B 234 APQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC 313 (594)
T ss_dssp CTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTC
T ss_pred CCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcC
Confidence 555555543 3333344565566789999999999986432233 46688
Q ss_pred CCCCeeeccCCC--cchhhhcCCCCccceEEEecc--------cccchhhHHHHhccCCCCCeEEEeccC----------
Q 003387 615 ENLNFISALHPC--CCTEDILGRLPNLRNLRIRGD--------LSYNQSLLSKSLCRLSCLESLKLANES---------- 674 (824)
Q Consensus 615 ~~L~~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~--------~~~~~~~l~~~l~~l~~L~~L~l~~~~---------- 674 (824)
++|+.|.+.... ..+......+++|++|++..+ .......+......+++|++|.+..+.
T Consensus 314 ~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~ 393 (594)
T 2p1m_B 314 PKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIA 393 (594)
T ss_dssp TTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHH
T ss_pred CCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHH
Confidence 899999987431 122332346899999999542 222333444444558899999776542
Q ss_pred -CCCCccEEEeC--c---c----------------CcCCCceEEEEEcccCCCCCcccccC-CCCCCeEEeeccccCCCe
Q 003387 675 -KMPRLSKIVLA--E---Y----------------LFPHSLTHLSFSNTDLMDDPMPTLEK-LPLLQVLKLKQNSYSGRK 731 (824)
Q Consensus 675 -~~~~L~~l~l~--~---~----------------~~~~~L~~L~L~~~~l~~~~~~~l~~-l~~L~~L~L~~~~~~~~~ 731 (824)
.+++|+.|.+. + + ..+++|+.|+|++ .+....+..++. +++|+.|+|++|.+++..
T Consensus 394 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~ 472 (594)
T 2p1m_B 394 RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLG 472 (594)
T ss_dssp HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHH
T ss_pred hhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHH
Confidence 36889999998 2 1 3467899999977 555444555555 899999999998876543
Q ss_pred eeecCCCCCCccEEeeccCCCCccce--eccCcccCccEEEEecCCCCCCCcccc-ccCccCcEEEecCC
Q 003387 732 LTCGSYGFPNLKVLHLKSMLWLEEWT--MGNAAMPKLECLIINPCAYLKKMPEQL-WYIKSLNKFDCWWP 798 (824)
Q Consensus 732 ~~~~~~~~~~L~~L~L~~~~~l~~l~--~~~~~lp~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~c 798 (824)
+.....++++|++|+|++|+. .... .....+++|+.|++++|+........+ ..+|+|+...+.+.
T Consensus 473 ~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 473 MHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred HHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 333335689999999999985 4322 234568999999999998732211122 35577765555443
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=4.5e-16 Score=162.10 Aligned_cols=199 Identities=25% Similarity=0.273 Sum_probs=119.6
Q ss_pred ceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCc-cCCCCCcceEEeecCCCCCccChhhhhcCCCccE
Q 003387 494 QLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYT 572 (824)
Q Consensus 494 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~ 572 (824)
..+++.+.+..... ++ ..+ .+.|+.|+|++|.+..+|. .+.++++|++|++++|.+..+|..+|.++++|++
T Consensus 17 ~~~~l~~~~~~l~~----ip-~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~ 89 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA----IP-SNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLET 89 (270)
T ss_dssp TTTEEECTTSCCSS----CC-SCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCE
T ss_pred CCCEEEccCCCCCc----cC-CCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCE
Confidence 35566666555432 11 111 2578999999999887765 6888999999999999999998887788999999
Q ss_pred eecCCccccccchh-hhccccCceecCCCccCCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEecccccc
Q 003387 573 LDMPFSYIDHTADE-FWKMNKLRHLNFGSITLPAHPGKFCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDLSYN 651 (824)
Q Consensus 573 L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 651 (824)
|++++|.+..+|.. +..+++|++|++++|.+.. ++ ...+..+++|+.|+++++. .
T Consensus 90 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~--------------------~~~~~~l~~L~~L~Ls~n~--l 145 (270)
T 2o6q_A 90 LWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS--LP--------------------PRVFDSLTKLTYLSLGYNE--L 145 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC--CC--------------------TTTTTTCTTCCEEECCSSC--C
T ss_pred EECCCCcCCcCCHhHcccccCCCEEECCCCccCe--eC--------------------HHHhCcCcCCCEEECCCCc--C
Confidence 99999988888754 6789999999998887752 11 1114455566666665552 1
Q ss_pred hhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeecccc
Q 003387 652 QSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSY 727 (824)
Q Consensus 652 ~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~ 727 (824)
....+..+..+++|+.|++++| .++.+....+..+++|+.|+|++|.+....+..+..+++|+.|++++|.+
T Consensus 146 ~~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 146 QSLPKGVFDKLTSLKELRLYNN----QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS----CCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CccCHhHccCCcccceeEecCC----cCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 1111112333444444444432 12222212223344555555555544433333444555555555554443
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.66 E-value=1.3e-17 Score=183.64 Aligned_cols=263 Identities=15% Similarity=0.087 Sum_probs=170.2
Q ss_pred hHhhhcccCcccEEEeeCccCc-----cCCccCCCCCcceEEeecCCCCCc----cChhh------hhcCCCccEeecCC
Q 003387 513 WEKFCGMFKLLRVLDLGSLVLI-----QYPSGIENLFLLRYLKLNIPSLNS----LPSSL------LSNLLNLYTLDMPF 577 (824)
Q Consensus 513 ~~~~~~~~~~Lr~L~L~~~~i~-----~lp~~i~~l~~Lr~L~L~~~~i~~----lp~~i------~~~L~~L~~L~L~~ 577 (824)
+...+..+++|++|+|++|.+. .++..+..+++|++|+|++|.+.. +|..+ +.++++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 3456677788888888888876 244557778888888888876553 34333 25788888888888
Q ss_pred ccccc-----cchhhhccccCceecCCCccCCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCC---------CccceEE
Q 003387 578 SYIDH-----TADEFWKMNKLRHLNFGSITLPAHPGKFCGSLENLNFISALHPCCCTEDILGRL---------PNLRNLR 643 (824)
Q Consensus 578 ~~l~~-----lp~~i~~L~~L~~L~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l---------~~L~~L~ 643 (824)
|.+.. +|..+.++++|++|++++|.+... . ...+...+..+ ++|+.|+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~-~-----------------~~~l~~~l~~l~~~~~~~~~~~L~~L~ 165 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ-A-----------------GAKIARALQELAVNKKAKNAPPLRSII 165 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH-H-----------------HHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHH-H-----------------HHHHHHHHHHHhhhhhcccCCCCcEEE
Confidence 87765 677788888888888888876310 0 00111113333 7788888
Q ss_pred Eeccccc--chhhHHHHhccCCCCCeEEEeccCCCCCccE-----EEeCccCcCCCceEEEEEcccCC----CCCccccc
Q 003387 644 IRGDLSY--NQSLLSKSLCRLSCLESLKLANESKMPRLSK-----IVLAEYLFPHSLTHLSFSNTDLM----DDPMPTLE 712 (824)
Q Consensus 644 l~~~~~~--~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~-----l~l~~~~~~~~L~~L~L~~~~l~----~~~~~~l~ 712 (824)
++++.-. ....+...+..+++|++|++++|. +.. +....+..+++|+.|+|++|.+. ..++..+.
T Consensus 166 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~----l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~ 241 (386)
T 2ca6_A 166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG----IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 241 (386)
T ss_dssp CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC----CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG
T ss_pred CCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCC----CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc
Confidence 8777521 222333566777888888887652 221 11113356778888888888864 34566778
Q ss_pred CCCCCCeEEeeccccCCCe---eeecC--CCCCCccEEeeccCCCCc----cceecc-CcccCccEEEEecCCCCCCCc-
Q 003387 713 KLPLLQVLKLKQNSYSGRK---LTCGS--YGFPNLKVLHLKSMLWLE----EWTMGN-AAMPKLECLIINPCAYLKKMP- 781 (824)
Q Consensus 713 ~l~~L~~L~L~~~~~~~~~---~~~~~--~~~~~L~~L~L~~~~~l~----~l~~~~-~~lp~L~~L~l~~c~~l~~lp- 781 (824)
.+++|+.|+|++|.+.+.. ++..+ +.+++|++|+|++|..-. .++..+ ..+|+|+.|++++|+.....|
T Consensus 242 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~ 321 (386)
T 2ca6_A 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDV 321 (386)
T ss_dssp GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHH
T ss_pred cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhH
Confidence 8999999999988876421 12222 448899999999887333 266555 558999999999998665443
Q ss_pred -ccc-ccCccCcEEEecC
Q 003387 782 -EQL-WYIKSLNKFDCWW 797 (824)
Q Consensus 782 -~~l-~~l~~L~~L~l~~ 797 (824)
..+ ..+++++.+++..
T Consensus 322 ~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 322 VDEIREVFSTRGRGELDE 339 (386)
T ss_dssp HHHHHHHHHHHTCCEECC
T ss_pred HHHHHHHhhhcCcchhhh
Confidence 111 2344555455443
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.66 E-value=2e-16 Score=164.96 Aligned_cols=229 Identities=18% Similarity=0.145 Sum_probs=153.1
Q ss_pred CcccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCceecCCC
Q 003387 521 KLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGS 600 (824)
Q Consensus 521 ~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~ 600 (824)
..+..+++.++.+... .....+.+|++|+++++.+..++. + ..+++|++|++++|.+..++ .+..+++|++|++++
T Consensus 19 ~~l~~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~~-l-~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 19 AETIKANLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQG-I-QYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHHHTCSCTTSE-ECHHHHTTCCEEECTTSCCCCCTT-G-GGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTT
T ss_pred HHHHHHHhcCcccccc-cccccccceeeeeeCCCCcccccc-c-ccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCC
Confidence 3444555666655533 235678899999999999998775 5 89999999999999998876 689999999999999
Q ss_pred ccCCCCCCC-CCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCc
Q 003387 601 ITLPAHPGK-FCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRL 679 (824)
Q Consensus 601 ~~~~~~~~p-~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L 679 (824)
|.+.. ..+ .++++++| +.|+++++. .....+..+..+++|++|++++| ++
T Consensus 95 n~l~~-~~~~~~~~l~~L----------------------~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n----~l 145 (272)
T 3rfs_A 95 NQLQS-LPNGVFDKLTNL----------------------KELVLVENQ--LQSLPDGVFDKLTNLTYLNLAHN----QL 145 (272)
T ss_dssp SCCCC-CCTTTTTTCTTC----------------------CEEECTTSC--CCCCCTTTTTTCTTCCEEECCSS----CC
T ss_pred CccCc-cChhHhcCCcCC----------------------CEEECCCCc--CCccCHHHhccCCCCCEEECCCC----cc
Confidence 98863 222 34444444 444444442 11111223445556666666554 23
Q ss_pred cEEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCccceec
Q 003387 680 SKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMG 759 (824)
Q Consensus 680 ~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~ 759 (824)
+.+....+..+++|+.|++++|.+.+..+..++.+++|+.|++++|.+.+. ....+..+++|++|++++|+.
T Consensus 146 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~------- 217 (272)
T 3rfs_A 146 QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNPW------- 217 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCB-------
T ss_pred CccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc-CHHHHhCCcCCCEEEccCCCc-------
Confidence 333323335567788888888877766666677888888888887777652 223356778888888887752
Q ss_pred cCcccCccEEEEecCCCCCCCccccccCccC
Q 003387 760 NAAMPKLECLIINPCAYLKKMPEQLWYIKSL 790 (824)
Q Consensus 760 ~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L 790 (824)
.+.+|+|+.|.+..|.....+|..+..++..
T Consensus 218 ~~~~~~l~~l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 218 DCTCPGIRYLSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp CCCTTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred cccCcHHHHHHHHHHhCCCcccCcccccCCC
Confidence 2457778888888887777777776665543
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.65 E-value=4.7e-18 Score=187.06 Aligned_cols=254 Identities=13% Similarity=0.102 Sum_probs=181.6
Q ss_pred ccEEEeeCccCccCCccCCCCCcceEEeecCCCCCc-----cChhhhhcCCCccEeecCCcccc----ccchhh------
Q 003387 523 LRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNS-----LPSSLLSNLLNLYTLDMPFSYID----HTADEF------ 587 (824)
Q Consensus 523 Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~-----lp~~i~~~L~~L~~L~L~~~~l~----~lp~~i------ 587 (824)
|++..++...+..++..+..+++|++|+|++|.+.. ++..+ .++++|++|+|++|.+. .+|..+
T Consensus 11 L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 11 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENI-ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp CEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTT-TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHH-HhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 444444455566788888889999999999998874 33334 68999999999998554 335444
Q ss_pred -hccccCceecCCCccCCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEeccccc--chhhHHHHhccC--
Q 003387 588 -WKMNKLRHLNFGSITLPAHPGKFCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDLSY--NQSLLSKSLCRL-- 662 (824)
Q Consensus 588 -~~L~~L~~L~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~l~~~l~~l-- 662 (824)
..+++|++|++++|.+... ....++..+..+++|+.|++++|.-. ....++..+..+
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~------------------~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~ 151 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPT------------------AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAV 151 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTT------------------THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HhhCCcccEEECCCCcCCHH------------------HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhh
Confidence 6889999999999887520 01123334788999999999998621 123445555555
Q ss_pred -------CCCCeEEEeccCCCCCccEEEeC----ccCcCCCceEEEEEcccCCCC-----CcccccCCCCCCeEEeeccc
Q 003387 663 -------SCLESLKLANESKMPRLSKIVLA----EYLFPHSLTHLSFSNTDLMDD-----PMPTLEKLPLLQVLKLKQNS 726 (824)
Q Consensus 663 -------~~L~~L~l~~~~~~~~L~~l~l~----~~~~~~~L~~L~L~~~~l~~~-----~~~~l~~l~~L~~L~L~~~~ 726 (824)
++|++|++++|. +..-.+. .+..+++|++|++++|.+... .+..+..+++|+.|+|++|.
T Consensus 152 ~~~~~~~~~L~~L~L~~n~----l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~ 227 (386)
T 2ca6_A 152 NKKAKNAPPLRSIICGRNR----LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 227 (386)
T ss_dssp HHHHHTCCCCCEEECCSSC----CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC
T ss_pred hhhcccCCCCcEEECCCCC----CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC
Confidence 899999999762 3211111 224678999999999987532 23378899999999999998
Q ss_pred cCC---CeeeecCCCCCCccEEeeccCCCCcc----ceecc--CcccCccEEEEecCCCCC----CCcccc-ccCccCcE
Q 003387 727 YSG---RKLTCGSYGFPNLKVLHLKSMLWLEE----WTMGN--AAMPKLECLIINPCAYLK----KMPEQL-WYIKSLNK 792 (824)
Q Consensus 727 ~~~---~~~~~~~~~~~~L~~L~L~~~~~l~~----l~~~~--~~lp~L~~L~l~~c~~l~----~lp~~l-~~l~~L~~ 792 (824)
+.. ..++..+..+++|++|+|++|..-.. ++..+ +.+++|+.|++++|.... .+|..+ .++++|+.
T Consensus 228 l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~ 307 (386)
T 2ca6_A 228 FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 307 (386)
T ss_dssp CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE
T ss_pred CCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceE
Confidence 752 23444567889999999999873322 23333 458999999999998655 388777 67899999
Q ss_pred EEecCCc
Q 003387 793 FDCWWPQ 799 (824)
Q Consensus 793 L~l~~c~ 799 (824)
|++++|+
T Consensus 308 L~l~~N~ 314 (386)
T 2ca6_A 308 LELNGNR 314 (386)
T ss_dssp EECTTSB
T ss_pred EEccCCc
Confidence 9999987
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.64 E-value=2.1e-16 Score=161.35 Aligned_cols=208 Identities=18% Similarity=0.249 Sum_probs=120.3
Q ss_pred CccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCcc-ccccch-hhhccccCceecCCC-ccCCCCCCC
Q 003387 533 LIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSY-IDHTAD-EFWKMNKLRHLNFGS-ITLPAHPGK 609 (824)
Q Consensus 533 i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~-l~~lp~-~i~~L~~L~~L~L~~-~~~~~~~~p 609 (824)
++.+|. +.. +|++|++++|.++.+|...|.++++|++|++++|. ++.+|. .+.++++|++|++++ |.+..
T Consensus 23 l~~ip~-~~~--~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~---- 95 (239)
T 2xwt_C 23 IQRIPS-LPP--STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY---- 95 (239)
T ss_dssp CSSCCC-CCT--TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE----
T ss_pred ccccCC-CCC--cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE----
Confidence 555665 433 67777777777776666444667777777777774 666654 466667777776665 54431
Q ss_pred CCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCccCc
Q 003387 610 FCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYLF 689 (824)
Q Consensus 610 ~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~ 689 (824)
.....+..+++|+.|+++++. ...+|. +..++ .
T Consensus 96 ------------------i~~~~f~~l~~L~~L~l~~n~---l~~lp~-~~~l~-------------------------~ 128 (239)
T 2xwt_C 96 ------------------IDPDALKELPLLKFLGIFNTG---LKMFPD-LTKVY-------------------------S 128 (239)
T ss_dssp ------------------ECTTSEECCTTCCEEEEEEEC---CCSCCC-CTTCC-------------------------B
T ss_pred ------------------cCHHHhCCCCCCCEEeCCCCC---Cccccc-ccccc-------------------------c
Confidence 011114555666666666552 110111 11111 1
Q ss_pred CCCceEEEEEcc-cCCCCCcccccCCCCCC-eEEeeccccCCCeeeecCCCCCCccEEeeccCCCCcccee-ccCcc-cC
Q 003387 690 PHSLTHLSFSNT-DLMDDPMPTLEKLPLLQ-VLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTM-GNAAM-PK 765 (824)
Q Consensus 690 ~~~L~~L~L~~~-~l~~~~~~~l~~l~~L~-~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~-~~~~l-p~ 765 (824)
+..|+.|++++| .+....+..++.+++|+ .|++++|.+. .++......++|++|++++|+.++.++. .+..+ ++
T Consensus 129 L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~--~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~ 206 (239)
T 2xwt_C 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT--SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG 206 (239)
T ss_dssp CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC--EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBC
T ss_pred cccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc--ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccC
Confidence 122336666666 55444445567777777 7777766654 2332222236788888877755666643 35566 78
Q ss_pred ccEEEEecCCCCCCCccccccCccCcEEEecCCc
Q 003387 766 LECLIINPCAYLKKMPEQLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 766 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 799 (824)
|+.|++++|+ ++.+|.. .+++|+.|.+.+++
T Consensus 207 L~~L~l~~N~-l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 207 PSLLDVSQTS-VTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CSEEECTTCC-CCCCCCT--TCTTCSEEECTTC-
T ss_pred CcEEECCCCc-cccCChh--HhccCceeeccCcc
Confidence 8888888776 4466654 57788888887775
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.63 E-value=9.1e-16 Score=162.90 Aligned_cols=192 Identities=21% Similarity=0.203 Sum_probs=118.8
Q ss_pred CCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCceecCCCccCCCCCCCCCCCCCCCCe
Q 003387 540 IENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKFCGSLENLNF 619 (824)
Q Consensus 540 i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~~~p~i~~L~~L~~ 619 (824)
...+.+|++|+++++.+..+| .+ ..+++|++|++++|.+..+|. +..+++|++|++++|.+. .++.++.+++|+.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~-~~-~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~--~~~~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE-GV-QYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLK--NVSAIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TG-GGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCS--CCGGGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCCccCch-hh-hccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCC--CchhhcCCCCCCE
Confidence 456889999999999999988 46 999999999999999999988 999999999999999876 3344555555555
Q ss_pred eeccCCCcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCccCcCCCceEEEEE
Q 003387 620 ISALHPCCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYLFPHSLTHLSFS 699 (824)
Q Consensus 620 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~ 699 (824)
|+++ ++.- ..++ .+..+++|++|++++|. ++.+. .+..+++|+.|+++
T Consensus 112 L~l~----------------------~n~l---~~~~-~l~~l~~L~~L~l~~n~----l~~~~--~l~~l~~L~~L~l~ 159 (308)
T 1h6u_A 112 LDLT----------------------STQI---TDVT-PLAGLSNLQVLYLDLNQ----ITNIS--PLAGLTNLQYLSIG 159 (308)
T ss_dssp EECT----------------------TSCC---CCCG-GGTTCTTCCEEECCSSC----CCCCG--GGGGCTTCCEEECC
T ss_pred EECC----------------------CCCC---CCch-hhcCCCCCCEEECCCCc----cCcCc--cccCCCCccEEEcc
Confidence 5554 4321 1111 13444445555444431 11111 12344555566666
Q ss_pred cccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCccceeccCcccCccEEEEecCC
Q 003387 700 NTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCA 775 (824)
Q Consensus 700 ~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~ 775 (824)
+|.+.+. +. +..+++|+.|++++|.+.+.. ....+++|++|++++|. +..++ .+..+++|+.|++++|+
T Consensus 160 ~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 160 NAQVSDL-TP-LANLSKLTTLKADDNKISDIS---PLASLPNLIEVHLKNNQ-ISDVS-PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp SSCCCCC-GG-GTTCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECTTSC-CCBCG-GGTTCTTCCEEEEEEEE
T ss_pred CCcCCCC-hh-hcCCCCCCEEECCCCccCcCh---hhcCCCCCCEEEccCCc-cCccc-cccCCCCCCEEEccCCe
Confidence 5555432 22 556666666666655554321 14455666666666654 34443 24556666666666665
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=4.7e-16 Score=158.75 Aligned_cols=84 Identities=19% Similarity=0.173 Sum_probs=71.9
Q ss_pred CcccEEEeeCccCccCCc-cCCCCCcceEEeecCCC-CCccChhhhhcCCCccEeecCC-ccccccch-hhhccccCcee
Q 003387 521 KLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPS-LNSLPSSLLSNLLNLYTLDMPF-SYIDHTAD-EFWKMNKLRHL 596 (824)
Q Consensus 521 ~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~-i~~lp~~i~~~L~~L~~L~L~~-~~l~~lp~-~i~~L~~L~~L 596 (824)
+.|++|++++|.++.+|. .+..+++|++|++++|. +..+|...|.++++|++|++++ |.++.+|. .+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 378999999999987776 68889999999999997 8888875558999999999998 78888874 47889999999
Q ss_pred cCCCccCC
Q 003387 597 NFGSITLP 604 (824)
Q Consensus 597 ~L~~~~~~ 604 (824)
++++|.+.
T Consensus 111 ~l~~n~l~ 118 (239)
T 2xwt_C 111 GIFNTGLK 118 (239)
T ss_dssp EEEEECCC
T ss_pred eCCCCCCc
Confidence 99988876
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.61 E-value=1.9e-15 Score=163.58 Aligned_cols=218 Identities=16% Similarity=0.102 Sum_probs=107.6
Q ss_pred cccEEEeeCccCccCCc-cCCCCCcceEEeecCCCCC-ccChhhhhcCCCccE-eecCCccccccc-hhhhccccCceec
Q 003387 522 LLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLN-SLPSSLLSNLLNLYT-LDMPFSYIDHTA-DEFWKMNKLRHLN 597 (824)
Q Consensus 522 ~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~i~-~lp~~i~~~L~~L~~-L~L~~~~l~~lp-~~i~~L~~L~~L~ 597 (824)
+++.|+|++|.|+.+|. .|.++++|++|+|++|.+. .+|...|.++++|+. +.+++|.+..+| ..+..+++|++|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 45555555555555543 3455555555555555542 344433345555443 233334555553 2244555555555
Q ss_pred CCCccCCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEecccccchhhHH-HHhccC-CCCCeEEEeccCC
Q 003387 598 FGSITLPAHPGKFCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDLSYNQSLLS-KSLCRL-SCLESLKLANESK 675 (824)
Q Consensus 598 L~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~-~~l~~l-~~L~~L~l~~~~~ 675 (824)
+++|.+.. +| ...+....++..|++..+. ....++ ..+..+ ..++.|++++|
T Consensus 111 l~~n~l~~--~~--------------------~~~~~~~~~l~~l~l~~~~--~i~~l~~~~f~~~~~~l~~L~L~~N-- 164 (350)
T 4ay9_X 111 ISNTGIKH--LP--------------------DVHKIHSLQKVLLDIQDNI--NIHTIERNSFVGLSFESVILWLNKN-- 164 (350)
T ss_dssp EEEECCSS--CC--------------------CCTTCCBSSCEEEEEESCT--TCCEECTTSSTTSBSSCEEEECCSS--
T ss_pred cccccccc--CC--------------------chhhcccchhhhhhhcccc--ccccccccchhhcchhhhhhccccc--
Confidence 55554431 11 0012233345566665432 111111 122222 34666666655
Q ss_pred CCCccEEEeCccCcCCCceEEEEEcc-cCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCc
Q 003387 676 MPRLSKIVLAEYLFPHSLTHLSFSNT-DLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLE 754 (824)
Q Consensus 676 ~~~L~~l~l~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~ 754 (824)
.++.+.-.. ....+|+.|.++++ .+.......++.+++|+.|++++|.+.. ++ .+.|.+|+.|.+.++..++
T Consensus 165 --~i~~i~~~~-f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~--lp--~~~~~~L~~L~~l~~~~l~ 237 (350)
T 4ay9_X 165 --GIQEIHNSA-FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS--LP--SYGLENLKKLRARSTYNLK 237 (350)
T ss_dssp --CCCEECTTS-STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC--CC--SSSCTTCCEEECTTCTTCC
T ss_pred --cccCCChhh-ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc--cC--hhhhccchHhhhccCCCcC
Confidence 344443222 22345667777643 3333333456677777777777666553 22 2446667777766666666
Q ss_pred cceeccCcccCccEEEEec
Q 003387 755 EWTMGNAAMPKLECLIINP 773 (824)
Q Consensus 755 ~l~~~~~~lp~L~~L~l~~ 773 (824)
.+| .+..+++|+.+++.+
T Consensus 238 ~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 238 KLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp CCC-CTTTCCSCCEEECSC
T ss_pred cCC-CchhCcChhhCcCCC
Confidence 666 355677777776654
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.59 E-value=6.7e-15 Score=151.36 Aligned_cols=178 Identities=24% Similarity=0.301 Sum_probs=110.8
Q ss_pred CcccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchh-hhccccCceecCC
Q 003387 521 KLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADE-FWKMNKLRHLNFG 599 (824)
Q Consensus 521 ~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~ 599 (824)
...++++++++.++.+|..+. .+|++|+|++|.+..++...+.++++|++|+|++|.+..++.. +..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 457889999998888888776 5889999999998888775558899999999999988887654 7889999999998
Q ss_pred CccCCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCc
Q 003387 600 SITLPAHPGKFCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRL 679 (824)
Q Consensus 600 ~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L 679 (824)
+|.+.. +| ...+..+++|+.|+++++. .....+..+..+++|+.|++++| ++
T Consensus 92 ~n~l~~--~~--------------------~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~Ls~N----~l 143 (251)
T 3m19_A 92 NNQLAS--LP--------------------LGVFDHLTQLDKLYLGGNQ--LKSLPSGVFDRLTKLKELRLNTN----QL 143 (251)
T ss_dssp TSCCCC--CC--------------------TTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSS----CC
T ss_pred CCcccc--cC--------------------hhHhcccCCCCEEEcCCCc--CCCcChhHhccCCcccEEECcCC----cC
Confidence 887752 11 1114455566666665552 11111112334444444444433 12
Q ss_pred cEEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccC
Q 003387 680 SKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYS 728 (824)
Q Consensus 680 ~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~ 728 (824)
+.+....+..+++|+.|+|++|.+....+..+..+++|+.|++++|.+.
T Consensus 144 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 144 QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 2222222334455555555555554444445555555555555555543
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=3.1e-15 Score=159.12 Aligned_cols=228 Identities=15% Similarity=0.106 Sum_probs=135.2
Q ss_pred CCceeEeeccCCCCCCCCcchhHh--hhcccCcccEEEeeCccCc-cCCccC--CCCCcceEEeecCCCCCcc-C----h
Q 003387 492 DSQLHSLLCCSPETRHLDPIDWEK--FCGMFKLLRVLDLGSLVLI-QYPSGI--ENLFLLRYLKLNIPSLNSL-P----S 561 (824)
Q Consensus 492 ~~~Lr~L~l~~~~~~~~~~~~~~~--~~~~~~~Lr~L~L~~~~i~-~lp~~i--~~l~~Lr~L~L~~~~i~~l-p----~ 561 (824)
...++.+.+.+.... ...... .+..++.|++|++++|.+. ..|..+ +.+++|++|+|++|.+... | .
T Consensus 63 ~~~l~~l~l~~~~~~---~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~ 139 (310)
T 4glp_A 63 ALRVRRLTVGAAQVP---AQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAEL 139 (310)
T ss_dssp SCCCCEEEECSCCCB---HHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred hcceeEEEEeCCcCC---HHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHH
Confidence 445666666655442 111111 1223466999999999987 667777 8899999999999998852 2 2
Q ss_pred hhhhcCCCccEeecCCccccccc-hhhhccccCceecCCCccCCCC-CCCCCCCCCCCCeeeccCCCcchhhhcCCCCcc
Q 003387 562 SLLSNLLNLYTLDMPFSYIDHTA-DEFWKMNKLRHLNFGSITLPAH-PGKFCGSLENLNFISALHPCCCTEDILGRLPNL 639 (824)
Q Consensus 562 ~i~~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~~~~-~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L 639 (824)
.+ ..+++|++|++++|.+..+| ..++.+++|++|++++|.+... .++ ....++.+++|
T Consensus 140 ~~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-------------------~~~~~~~l~~L 199 (310)
T 4glp_A 140 QQ-WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLM-------------------AALCPHKFPAI 199 (310)
T ss_dssp HT-TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHH-------------------TTSCTTSSCCC
T ss_pred Hh-hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhh-------------------HHHhhhcCCCC
Confidence 33 57889999999999888776 4588899999999998876410 000 01113567778
Q ss_pred ceEEEecccccchhhHHHH-hccCCCCCeEEEeccCCCCCccEEEeCccCcCCCceEEEEEcccCCCCCcccccCC---C
Q 003387 640 RNLRIRGDLSYNQSLLSKS-LCRLSCLESLKLANESKMPRLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKL---P 715 (824)
Q Consensus 640 ~~L~l~~~~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l---~ 715 (824)
+.|+++++.-......+.. +..+++|++|++++| .+.+..|..++.+ +
T Consensus 200 ~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N----------------------------~l~~~~p~~~~~~~~~~ 251 (310)
T 4glp_A 200 QNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN----------------------------SLRATVNPSAPRCMWSS 251 (310)
T ss_dssp CSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS----------------------------CCCCCCCSCCSSCCCCT
T ss_pred CEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC----------------------------CCCccchhhHHhccCcC
Confidence 8888877742222222222 355566666666544 3333333333333 4
Q ss_pred CCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCccceeccCcccCccEEEEecCCC
Q 003387 716 LLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAY 776 (824)
Q Consensus 716 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~ 776 (824)
+|++|++++|.+.. ++.. -+++|++|+|++|. +..+|. ...+|+|+.|++++|+.
T Consensus 252 ~L~~L~Ls~N~l~~--lp~~--~~~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 252 ALNSLNLSFAGLEQ--VPKG--LPAKLRVLDLSSNR-LNRAPQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp TCCCEECCSSCCCS--CCSC--CCSCCSCEECCSCC-CCSCCC-TTSCCCCSCEECSSTTT
T ss_pred cCCEEECCCCCCCc--hhhh--hcCCCCEEECCCCc-CCCCch-hhhCCCccEEECcCCCC
Confidence 55555555555442 2211 12556666665554 444433 45566666666666654
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.58 E-value=8.1e-16 Score=167.46 Aligned_cols=93 Identities=20% Similarity=0.204 Sum_probs=64.9
Q ss_pred hhHhhhcccCcccEEEeeCccCccCC-----ccCCCCC-cceEEeecCCCCCccChhhhhcC-----CCccEeecCCccc
Q 003387 512 DWEKFCGMFKLLRVLDLGSLVLIQYP-----SGIENLF-LLRYLKLNIPSLNSLPSSLLSNL-----LNLYTLDMPFSYI 580 (824)
Q Consensus 512 ~~~~~~~~~~~Lr~L~L~~~~i~~lp-----~~i~~l~-~Lr~L~L~~~~i~~lp~~i~~~L-----~~L~~L~L~~~~l 580 (824)
..+.++...++|++|+|++|.+...+ ..+.+++ +|++|+|++|.+.......+..+ ++|++|+|++|.+
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 45566666677888888888877555 5566777 78888888888776543322554 7888888888877
Q ss_pred cccc-hh----hhcc-ccCceecCCCccCC
Q 003387 581 DHTA-DE----FWKM-NKLRHLNFGSITLP 604 (824)
Q Consensus 581 ~~lp-~~----i~~L-~~L~~L~L~~~~~~ 604 (824)
...+ .. +..+ ++|++|++++|.+.
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 122 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWNDFS 122 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCcCC
Confidence 7554 32 3344 78888888888775
No 96
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.56 E-value=1.4e-14 Score=152.28 Aligned_cols=144 Identities=18% Similarity=0.098 Sum_probs=83.8
Q ss_pred CeeEEEEEecCCCcccccccCCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCccCCCCCcceEEee
Q 003387 472 KAKRLNAVEREGDFACLDDYDSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKL 551 (824)
Q Consensus 472 ~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L 551 (824)
+.+.+... +.....++..+.++++.|.+.++... ...+..|..+++|++|+|++|.++.+|.. +.+++|++|++
T Consensus 11 ~l~~l~~~-~~~l~~ip~~~~~~l~~L~L~~N~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 11 SHLEVNCD-KRNLTALPPDLPKDTTILHLSENLLY----TFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp TCCEEECT-TSCCSSCCSCCCTTCCEEECTTSCCS----EEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEEC
T ss_pred CccEEECC-CCCCCcCCCCCCCCCCEEEcCCCcCC----ccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEEC
Confidence 34445444 33333344444566666666666542 23345566666677777777666655543 56666777777
Q ss_pred cCCCCCccChhhhhcCCCccEeecCCccccccc-hhhhccccCceecCCCccCCCCCCC-CCCCCCCCCeeecc
Q 003387 552 NIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTA-DEFWKMNKLRHLNFGSITLPAHPGK-FCGSLENLNFISAL 623 (824)
Q Consensus 552 ~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~~~~~~p-~i~~L~~L~~l~~~ 623 (824)
++|.+..+|..+ ..+++|++|++++|.++.+| ..+..+++|++|++++|.+.. ..+ .+..+++|+.|+++
T Consensus 85 s~N~l~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~ 156 (290)
T 1p9a_G 85 SHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLA 156 (290)
T ss_dssp CSSCCSSCCCCT-TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECT
T ss_pred CCCcCCcCchhh-ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc-cChhhcccccCCCEEECC
Confidence 776666666655 66667777777666666665 336666667777666666652 111 33444444444444
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.56 E-value=1.4e-15 Score=161.87 Aligned_cols=104 Identities=18% Similarity=0.114 Sum_probs=78.2
Q ss_pred cCCCceEEEEEcccCCCCCcc----cccCCCCCCeEEeeccccCCCeeeecCCC---CCCccEEeeccCCCCccceeccC
Q 003387 689 FPHSLTHLSFSNTDLMDDPMP----TLEKLPLLQVLKLKQNSYSGRKLTCGSYG---FPNLKVLHLKSMLWLEEWTMGNA 761 (824)
Q Consensus 689 ~~~~L~~L~L~~~~l~~~~~~----~l~~l~~L~~L~L~~~~~~~~~~~~~~~~---~~~L~~L~L~~~~~l~~l~~~~~ 761 (824)
.+++|++|+|++|.+.. .+. .++.+++|++|++++|.+.+.. +..... +++|++|++++|. ++.+|...
T Consensus 195 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~-p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~- 270 (310)
T 4glp_A 195 KFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATV-NPSAPRCMWSSALNSLNLSFAG-LEQVPKGL- 270 (310)
T ss_dssp SSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCC-CSCCSSCCCCTTCCCEECCSSC-CCSCCSCC-
T ss_pred cCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccc-hhhHHhccCcCcCCEEECCCCC-CCchhhhh-
Confidence 45677777777777642 222 2568899999999999987632 222333 4899999999986 66777654
Q ss_pred cccCccEEEEecCCCCCCCccccccCccCcEEEecCCc
Q 003387 762 AMPKLECLIINPCAYLKKMPEQLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 762 ~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 799 (824)
+++|+.|++++|. +..+|. +..+++|+.|++++++
T Consensus 271 -~~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 271 -PAKLRVLDLSSNR-LNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp -CSCCSCEECCSCC-CCSCCC-TTSCCCCSCEECSSTT
T ss_pred -cCCCCEEECCCCc-CCCCch-hhhCCCccEEECcCCC
Confidence 4899999999997 456665 6788999999999987
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.55 E-value=4.8e-16 Score=169.28 Aligned_cols=247 Identities=15% Similarity=0.092 Sum_probs=134.7
Q ss_pred EEEeeCccCc-cCCccCCCCCcceEEeecCCCCCccCh----hhhhcCC-CccEeecCCcccccc-chhhhcc-----cc
Q 003387 525 VLDLGSLVLI-QYPSGIENLFLLRYLKLNIPSLNSLPS----SLLSNLL-NLYTLDMPFSYIDHT-ADEFWKM-----NK 592 (824)
Q Consensus 525 ~L~L~~~~i~-~lp~~i~~l~~Lr~L~L~~~~i~~lp~----~i~~~L~-~L~~L~L~~~~l~~l-p~~i~~L-----~~ 592 (824)
+++++.+.++ .+|..+....+|++|+|++|.+...+. ..+.+++ +|++|+|++|.+... +..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 4678888887 455555666779999999999998875 4448888 899999999988876 5556665 99
Q ss_pred CceecCCCccCCCCCCCC----CCCC-CCCCeeeccCCCc------chhhhcCC-CCccceEEEecccc--cchhhHHHH
Q 003387 593 LRHLNFGSITLPAHPGKF----CGSL-ENLNFISALHPCC------CTEDILGR-LPNLRNLRIRGDLS--YNQSLLSKS 658 (824)
Q Consensus 593 L~~L~L~~~~~~~~~~p~----i~~L-~~L~~l~~~~~~~------~~~~~l~~-l~~L~~L~l~~~~~--~~~~~l~~~ 658 (824)
|++|++++|.+....... +..+ ++|+.|+++.+.- .+...+.. .++|+.|+++++.- .....++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999886311111 2333 4566666552211 11111223 24566666665531 112344444
Q ss_pred hccCC-CCCeEEEeccCCCCCccEEEeCc----cCcC-CCceEEEEEcccCCCCC----cccccC-CCCCCeEEeecccc
Q 003387 659 LCRLS-CLESLKLANESKMPRLSKIVLAE----YLFP-HSLTHLSFSNTDLMDDP----MPTLEK-LPLLQVLKLKQNSY 727 (824)
Q Consensus 659 l~~l~-~L~~L~l~~~~~~~~L~~l~l~~----~~~~-~~L~~L~L~~~~l~~~~----~~~l~~-l~~L~~L~L~~~~~ 727 (824)
+..++ +|++|++++|. +....... ...+ ++|+.|+|++|.+.... +..+.. .++|+.|+|++|.+
T Consensus 162 l~~~~~~L~~L~Ls~n~----l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNN----LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp HHTSCTTCCEEECTTSC----GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred HhcCCccccEeeecCCC----CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 44443 55565555441 22111100 0122 35666666666554322 222222 23566666665555
Q ss_pred CCCe---eeecCCCCCCccEEeeccCC---C----CccceeccCcccCccEEEEecCC
Q 003387 728 SGRK---LTCGSYGFPNLKVLHLKSML---W----LEEWTMGNAAMPKLECLIINPCA 775 (824)
Q Consensus 728 ~~~~---~~~~~~~~~~L~~L~L~~~~---~----l~~l~~~~~~lp~L~~L~l~~c~ 775 (824)
.... +......+++|++|++++|. . +..++.....+++|+.|++++|+
T Consensus 238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 4421 12223445566666665553 0 11122233445555556665555
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.55 E-value=6.6e-15 Score=154.84 Aligned_cols=173 Identities=23% Similarity=0.231 Sum_probs=115.4
Q ss_pred hcccCcccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCcee
Q 003387 517 CGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHL 596 (824)
Q Consensus 517 ~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 596 (824)
+..++.|++|++++|.+..+|. +..+++|++|++++|.+..++. + +++++|++|++++|.+..+|. +..+++|++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l-~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-L-ANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-G-TTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred hhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-c-ccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence 3456778888888888777754 7778888888888888887776 5 788888888888887777665 7788888888
Q ss_pred cCCCccCCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCC
Q 003387 597 NFGSITLPAHPGKFCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKM 676 (824)
Q Consensus 597 ~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~ 676 (824)
++++|.+.. ++. +..+++|+.|+++++.- ..+ ..+..+++|+.|++++|
T Consensus 118 ~L~~n~i~~--~~~----------------------l~~l~~L~~L~l~~n~l---~~~-~~l~~l~~L~~L~L~~N--- 166 (291)
T 1h6t_A 118 SLEHNGISD--ING----------------------LVHLPQLESLYLGNNKI---TDI-TVLSRLTKLDTLSLEDN--- 166 (291)
T ss_dssp ECTTSCCCC--CGG----------------------GGGCTTCCEEECCSSCC---CCC-GGGGGCTTCSEEECCSS---
T ss_pred ECCCCcCCC--Chh----------------------hcCCCCCCEEEccCCcC---Ccc-hhhccCCCCCEEEccCC---
Confidence 888877652 222 44455555555555531 111 24555666666666654
Q ss_pred CCccEEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCC
Q 003387 677 PRLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSG 729 (824)
Q Consensus 677 ~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 729 (824)
.++.+. .+..+++|+.|++++|.+.. .+.+..+++|+.|++++|.+..
T Consensus 167 -~l~~~~--~l~~l~~L~~L~L~~N~i~~--l~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 167 -QISDIV--PLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -CCCCCG--GGTTCTTCCEEECCSSCCCB--CGGGTTCTTCSEEEEEEEEEEC
T ss_pred -ccccch--hhcCCCccCEEECCCCcCCC--ChhhccCCCCCEEECcCCcccC
Confidence 122221 13556777777777777653 2347788888888888777654
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.55 E-value=6e-15 Score=170.26 Aligned_cols=83 Identities=20% Similarity=0.173 Sum_probs=54.3
Q ss_pred cccCcccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCceec
Q 003387 518 GMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLN 597 (824)
Q Consensus 518 ~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 597 (824)
..++.|+.|++++|.+..+| .+..|++|++|+|++|.+..+|+ + +.|++|+.|+|++|.+..+| .+..+++|++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l-~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-L-TNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-G-GGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-h-ccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence 45566666666666666655 36666677777777666666665 4 66677777777666666655 366666677776
Q ss_pred CCCccCC
Q 003387 598 FGSITLP 604 (824)
Q Consensus 598 L~~~~~~ 604 (824)
|++|.+.
T Consensus 116 Ls~N~l~ 122 (605)
T 1m9s_A 116 LEHNGIS 122 (605)
T ss_dssp CTTSCCC
T ss_pred ecCCCCC
Confidence 6666654
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.53 E-value=1.5e-14 Score=164.96 Aligned_cols=75 Identities=23% Similarity=0.256 Sum_probs=65.9
Q ss_pred CcccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCceecCCC
Q 003387 521 KLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGS 600 (824)
Q Consensus 521 ~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~ 600 (824)
.+|++|+|++|.++.+|..+. ++|++|+|++|.++.+| . .+++|++|++++|.++.+|. +.+ +|++|++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip-~---~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP-E---LPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc-c---ccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 389999999999999998774 78999999999999998 3 47899999999999999988 665 999999999
Q ss_pred ccCC
Q 003387 601 ITLP 604 (824)
Q Consensus 601 ~~~~ 604 (824)
|.+.
T Consensus 130 N~l~ 133 (571)
T 3cvr_A 130 NQLT 133 (571)
T ss_dssp SCCS
T ss_pred CcCC
Confidence 8876
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.51 E-value=6.3e-14 Score=139.59 Aligned_cols=180 Identities=20% Similarity=0.247 Sum_probs=115.3
Q ss_pred cEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchh-hhccccCceecCCCcc
Q 003387 524 RVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADE-FWKMNKLRHLNFGSIT 602 (824)
Q Consensus 524 r~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~ 602 (824)
+.++.+++.+..+|..+. .+|++|++++|.+..+|...+.++++|++|++++|.+..+|.. +..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCCC--CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 567777777777776553 4888888888888888876657888888888888888887765 5778888888888877
Q ss_pred CCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCccEE
Q 003387 603 LPAHPGKFCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKI 682 (824)
Q Consensus 603 ~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l 682 (824)
+.. +| ...+..+++|+.|+++++. ++.+
T Consensus 88 l~~--~~--------------------~~~~~~l~~L~~L~L~~N~------------------------------l~~~ 115 (208)
T 2o6s_A 88 LQS--LP--------------------NGVFDKLTQLKELALNTNQ------------------------------LQSL 115 (208)
T ss_dssp CCC--CC--------------------TTTTTTCTTCCEEECCSSC------------------------------CCCC
T ss_pred CCc--cC--------------------HhHhcCccCCCEEEcCCCc------------------------------Cccc
Confidence 642 11 1114455566666655542 1111
Q ss_pred EeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCccceeccCc
Q 003387 683 VLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAA 762 (824)
Q Consensus 683 ~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~ 762 (824)
....+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+ .+++|+.|.++.+.....+|..++.
T Consensus 116 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 116 PDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--------CTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred CHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--------CCCCHHHHHHHHHhCCceeeccCcc
Confidence 00111334556666666666655445556777777777777765432 4567777777666555566655555
Q ss_pred ccC
Q 003387 763 MPK 765 (824)
Q Consensus 763 lp~ 765 (824)
++.
T Consensus 188 l~~ 190 (208)
T 2o6s_A 188 VAP 190 (208)
T ss_dssp BCT
T ss_pred ccC
Confidence 544
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.50 E-value=2.4e-14 Score=165.24 Aligned_cols=189 Identities=20% Similarity=0.183 Sum_probs=146.6
Q ss_pred cccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCceecCCCc
Q 003387 522 LLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSI 601 (824)
Q Consensus 522 ~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~ 601 (824)
.+..+.++.+.+..++. +..|.+|++|++++|.+..+|. + ..|++|+.|+|++|.+..+|. +..|++|++|+|++|
T Consensus 22 ~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l~~-l-~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQG-I-QYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCCTT-G-GGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS
T ss_pred HHHHHhccCCCcccccc-hhcCCCCCEEECcCCCCCCChH-H-ccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC
Confidence 34455666666654433 5678999999999999999974 6 999999999999999999987 999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCeeeccCC-CcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCcc
Q 003387 602 TLPAHPGKFCGSLENLNFISALHP-CCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLS 680 (824)
Q Consensus 602 ~~~~~~~p~i~~L~~L~~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~ 680 (824)
.+. .+|.++.+++|+.|+++.+ ...++. +..|++|+.|++++|.- ..+ ..+..+++|+.|+|++|. +.
T Consensus 98 ~l~--~l~~l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l---~~l-~~l~~l~~L~~L~Ls~N~----l~ 166 (605)
T 1m9s_A 98 KIK--DLSSLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGNNKI---TDI-TVLSRLTKLDTLSLEDNQ----IS 166 (605)
T ss_dssp CCC--CCTTSTTCTTCCEEECTTSCCCCCGG-GGGCTTCSEEECCSSCC---CCC-GGGGSCTTCSEEECCSSC----CC
T ss_pred CCC--CChhhccCCCCCEEEecCCCCCCCcc-ccCCCccCEEECCCCcc---CCc-hhhcccCCCCEEECcCCc----CC
Confidence 987 5678888999999998843 223444 88889999999988852 222 467788888888888762 33
Q ss_pred EEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCC
Q 003387 681 KIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSG 729 (824)
Q Consensus 681 ~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 729 (824)
.+.. +..+++|+.|+|++|.+.+ ++.+..+++|+.|+|++|.+..
T Consensus 167 ~~~~--l~~l~~L~~L~Ls~N~i~~--l~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 167 DIVP--LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCB--CGGGTTCTTCSEEECCSEEEEC
T ss_pred Cchh--hccCCCCCEEECcCCCCCC--ChHHccCCCCCEEEccCCcCcC
Confidence 3322 4667888888998888754 2568888889999988887765
No 104
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.49 E-value=3.3e-14 Score=125.04 Aligned_cols=81 Identities=26% Similarity=0.349 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHhhcccccccchhchHHHHHHHHHHHHHHHHHccccchhhHHHhhhcccc---ccCChhHHHHHHHHHHH
Q 003387 4 NFRLFSERLRRVLAGEEVTLPDAAKQPIQNLHAEVEIVTSWLSEFEDDISLLLFEKMAEE---ESHDPDLATVMDEINWF 80 (824)
Q Consensus 4 ~~~~~~~kl~~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~~~~~~~~~~~~~~a~~---~~~~~~~~~wl~~l~~~ 80 (824)
+++++++||.+++. +|+.++.||+++++.|+++|+.|+++|.| |+. +..++.++.|+++||++
T Consensus 2 ~v~~ll~KL~~ll~-~E~~l~~gv~~~i~~Lk~eL~~m~a~L~d-------------a~~~~~~~~d~~vk~W~~~vrdl 67 (115)
T 3qfl_A 2 AISNLIPKLGELLT-EEFKLHKGVKKNIEDLGKELESMNAALIK-------------IGEVPREQLDSQDKLWADEVREL 67 (115)
T ss_dssp TTCSHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HTTSCGGGCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH-HHHHHHhchHHHHHHHHHHHHHHHHHHHH-------------HHHhccccCCHHHHHHHHHHHHH
Confidence 57789999999999 99999999999999999999999999999 776 35789999999999999
Q ss_pred hhhhHHHHHHhHHhhccc
Q 003387 81 TYESEKVIDTFINSITQQ 98 (824)
Q Consensus 81 ~~~~ed~ld~~~~~~~~~ 98 (824)
+||+||++|+|.++....
T Consensus 68 aYD~ED~iD~f~~~~~~~ 85 (115)
T 3qfl_A 68 SYVIEDVVDKFLVQVDGI 85 (115)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 999999999999988643
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.48 E-value=8.9e-14 Score=146.15 Aligned_cols=184 Identities=22% Similarity=0.196 Sum_probs=145.2
Q ss_pred EEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCceecCCCccCC
Q 003387 525 VLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLP 604 (824)
Q Consensus 525 ~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~ 604 (824)
.+.+....+..++ .+..+.+|++|++++|.+..+|. + ..+++|++|++++|.+..++. +.++++|++|++++|.+.
T Consensus 28 ~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~~-~-~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~ 103 (291)
T 1h6t_A 28 KDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQG-I-QYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVK 103 (291)
T ss_dssp HHHTTCSCTTSEE-CHHHHHTCCEEECTTSCCCCCTT-G-GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred HHHhcCCCccccc-chhhcCcccEEEccCCCcccChh-H-hcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCC
Confidence 3345555554332 24568899999999999999875 5 899999999999999999987 999999999999998875
Q ss_pred CCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCccEEEe
Q 003387 605 AHPGKFCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIVL 684 (824)
Q Consensus 605 ~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l 684 (824)
. ++. +..+++|+.|+++++.-. .+ ..+..+++|+.|++++| .++.+
T Consensus 104 ~-----------------------~~~-l~~l~~L~~L~L~~n~i~---~~-~~l~~l~~L~~L~l~~n----~l~~~-- 149 (291)
T 1h6t_A 104 D-----------------------LSS-LKDLKKLKSLSLEHNGIS---DI-NGLVHLPQLESLYLGNN----KITDI-- 149 (291)
T ss_dssp C-----------------------GGG-GTTCTTCCEEECTTSCCC---CC-GGGGGCTTCCEEECCSS----CCCCC--
T ss_pred C-----------------------Chh-hccCCCCCEEECCCCcCC---CC-hhhcCCCCCCEEEccCC----cCCcc--
Confidence 2 123 677788888888877421 22 35778999999999987 34443
Q ss_pred CccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCC
Q 003387 685 AEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSML 751 (824)
Q Consensus 685 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 751 (824)
..+..+++|+.|++++|.+.+..+ ++.+++|+.|++++|.+... .....+++|+.|++++|+
T Consensus 150 ~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l---~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 150 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELFSQE 211 (291)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC---GGGTTCTTCSEEEEEEEE
T ss_pred hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC---hhhccCCCCCEEECcCCc
Confidence 455788999999999999865433 89999999999999988752 247889999999999986
No 106
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.48 E-value=2.5e-13 Score=139.49 Aligned_cols=169 Identities=18% Similarity=0.148 Sum_probs=115.2
Q ss_pred eEEEEEecCCCcccccccCCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCc-cCCCCCcceEEeec
Q 003387 474 KRLNAVEREGDFACLDDYDSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLN 552 (824)
Q Consensus 474 r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~ 552 (824)
+++... +.....+|..+.+.++.|.+.++.... ..+..|..+++|++|+|++|.++.++. .+..+++|++|+|+
T Consensus 17 ~~l~~~-~~~l~~~p~~~~~~l~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 17 KEVDCQ-GKSLDSVPSGIPADTEKLDLQSTGLAT----LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp TEEECT-TCCCSSCCSCCCTTCCEEECTTSCCCC----CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred eEEecC-CCCccccCCCCCCCCCEEEccCCCcCc----cCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 344444 444444555556778888887776642 344567788888888888888875544 46778888888888
Q ss_pred CCCCCccChhhhhcCCCccEeecCCccccccchh-hhccccCceecCCCccCCCCCCC-CCCCCCCCCeeeccCC--Ccc
Q 003387 553 IPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADE-FWKMNKLRHLNFGSITLPAHPGK-FCGSLENLNFISALHP--CCC 628 (824)
Q Consensus 553 ~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~~~~~~p-~i~~L~~L~~l~~~~~--~~~ 628 (824)
+|.+..+|...|..+++|++|+|++|.+..+|.. +..+++|++|++++|.+.. ..+ .++.+++|+.|+++.+ ...
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc-cCHHHcCcCcCCCEEECCCCcCCcc
Confidence 8888888776667888888888888888888765 5778888888888887763 222 5666677777766632 112
Q ss_pred hhhhcCCCCccceEEEeccc
Q 003387 629 TEDILGRLPNLRNLRIRGDL 648 (824)
Q Consensus 629 ~~~~l~~l~~L~~L~l~~~~ 648 (824)
....+..+++|+.|+++++.
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCC
T ss_pred CHHHHhCCCCCCEEEeeCCc
Confidence 22235566666666666654
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.46 E-value=8.3e-14 Score=137.38 Aligned_cols=153 Identities=16% Similarity=0.175 Sum_probs=92.3
Q ss_pred cccCcccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccc-cchhhhccccCcee
Q 003387 518 GMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDH-TADEFWKMNKLRHL 596 (824)
Q Consensus 518 ~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L 596 (824)
..+++|++|++++|.+..+| .+..+++|++|++++|.+..++ .+ ..+++|++|++++|.+.. .|..+..+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PI-SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GG-TTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hh-hcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 45667777777777777666 5677777777777777666554 34 677777777777776664 45556677777777
Q ss_pred cCCCccCCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCC
Q 003387 597 NFGSITLPAHPGKFCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKM 676 (824)
Q Consensus 597 ~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~ 676 (824)
++++|.+. ...+.. +..+++|+.|++++|. ....++ .+
T Consensus 118 ~Ls~n~i~---------------------~~~~~~-l~~l~~L~~L~L~~n~--~i~~~~-~l----------------- 155 (197)
T 4ezg_A 118 DISHSAHD---------------------DSILTK-INTLPKVNSIDLSYNG--AITDIM-PL----------------- 155 (197)
T ss_dssp ECCSSBCB---------------------GGGHHH-HTTCSSCCEEECCSCT--BCCCCG-GG-----------------
T ss_pred EecCCccC---------------------cHhHHH-HhhCCCCCEEEccCCC--CccccH-hh-----------------
Confidence 77766654 112222 5556666666666552 011111 12
Q ss_pred CCccEEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccC
Q 003387 677 PRLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYS 728 (824)
Q Consensus 677 ~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~ 728 (824)
..+++|+.|++++|.+.+ .+.+..+++|+.|++++|.+.
T Consensus 156 -----------~~l~~L~~L~l~~n~i~~--~~~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 156 -----------KTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp -----------GGCSSCCEEECTTBCCCC--CTTGGGCSSCCEEEECBC---
T ss_pred -----------cCCCCCCEEECCCCCCcC--hHHhccCCCCCEEEeeCcccC
Confidence 344556666666666543 225667777777777776654
No 108
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.46 E-value=1.8e-13 Score=148.09 Aligned_cols=240 Identities=15% Similarity=0.114 Sum_probs=174.0
Q ss_pred cEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccc-cccchh-hhccccCcee-cCCC
Q 003387 524 RVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYI-DHTADE-FWKMNKLRHL-NFGS 600 (824)
Q Consensus 524 r~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l-~~lp~~-i~~L~~L~~L-~L~~ 600 (824)
++++.+++.++.+|..+. .++++|+|++|+|+.+|...|.+|++|++|+|++|.+ +.+|.. |.++++|+.+ .+++
T Consensus 12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 678889999999998774 6899999999999999987669999999999999976 456644 7788888764 4444
Q ss_pred ccCCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCcc
Q 003387 601 ITLPAHPGKFCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLS 680 (824)
Q Consensus 601 ~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~ 680 (824)
|.+. ...+..+..+++|+.|+++++.- ....+..+....++..|++..+ .++.
T Consensus 90 N~l~----------------------~l~~~~f~~l~~L~~L~l~~n~l--~~~~~~~~~~~~~l~~l~l~~~---~~i~ 142 (350)
T 4ay9_X 90 NNLL----------------------YINPEAFQNLPNLQYLLISNTGI--KHLPDVHKIHSLQKVLLDIQDN---INIH 142 (350)
T ss_dssp TTCC----------------------EECTTSBCCCTTCCEEEEEEECC--SSCCCCTTCCBSSCEEEEEESC---TTCC
T ss_pred Cccc----------------------ccCchhhhhcccccccccccccc--ccCCchhhcccchhhhhhhccc---cccc
Confidence 5543 11122377788888888888741 1111122334456677777642 2455
Q ss_pred EEEeCccCcC-CCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCccceec
Q 003387 681 KIVLAEYLFP-HSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMG 759 (824)
Q Consensus 681 ~l~l~~~~~~-~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~ 759 (824)
.+....+..+ ..++.|++++|.+.. ++......++|+.|.+.+++.........+.++++|++|++++|. ++.+|.
T Consensus 143 ~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~- 219 (350)
T 4ay9_X 143 TIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPS- 219 (350)
T ss_dssp EECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCS-
T ss_pred cccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccCh-
Confidence 5544433333 468999999998863 444445667899999986544432222345788999999999985 788874
Q ss_pred cCcccCccEEEEecCCCCCCCccccccCccCcEEEecC
Q 003387 760 NAAMPKLECLIINPCAYLKKMPEQLWYIKSLNKFDCWW 797 (824)
Q Consensus 760 ~~~lp~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 797 (824)
..+.+|+.|.+.+|..++.+|. +..+++|+.+++.+
T Consensus 220 -~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 220 -YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp -SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred -hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 4588999999999999999994 88999999999864
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.44 E-value=1.8e-13 Score=134.88 Aligned_cols=153 Identities=19% Similarity=0.221 Sum_probs=113.3
Q ss_pred CCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCceecCCCccCCCCCCCCCCCCCCCCe
Q 003387 540 IENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKFCGSLENLNF 619 (824)
Q Consensus 540 i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~~~p~i~~L~~L~~ 619 (824)
...+++|++|++++|.+..+| .+ ..+++|++|++++|.+..++ .+..+++|++|++++|.+..
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~-~l-~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~-------------- 102 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLT-GI-EYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTS-------------- 102 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCT-TG-GGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBG--------------
T ss_pred hhhcCCccEEeccCCCccChH-HH-hcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCc--------------
Confidence 366888999999999999888 56 89999999999999777766 58889999999998887752
Q ss_pred eeccCCCcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCccCcCCCceEEEEE
Q 003387 620 ISALHPCCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYLFPHSLTHLSFS 699 (824)
Q Consensus 620 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~ 699 (824)
..+.. +..+++|+.|+++++. .....+..+..+++|++ |+++
T Consensus 103 -------~~~~~-l~~l~~L~~L~Ls~n~--i~~~~~~~l~~l~~L~~----------------------------L~L~ 144 (197)
T 4ezg_A 103 -------DKIPN-LSGLTSLTLLDISHSA--HDDSILTKINTLPKVNS----------------------------IDLS 144 (197)
T ss_dssp -------GGSCC-CTTCTTCCEEECCSSB--CBGGGHHHHTTCSSCCE----------------------------EECC
T ss_pred -------ccChh-hcCCCCCCEEEecCCc--cCcHhHHHHhhCCCCCE----------------------------EEcc
Confidence 12222 6778888888888874 33334555555554444 4445
Q ss_pred cccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCC
Q 003387 700 NTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSML 751 (824)
Q Consensus 700 ~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 751 (824)
+|......+ .++.+++|+.|++++|.+.+. . ....+++|++|++++++
T Consensus 145 ~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~--~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 145 YNGAITDIM-PLKTLPELKSLNIQFDGVHDY--R-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp SCTBCCCCG-GGGGCSSCCEEECTTBCCCCC--T-TGGGCSSCCEEEECBC-
T ss_pred CCCCccccH-hhcCCCCCCEEECCCCCCcCh--H-HhccCCCCCEEEeeCcc
Confidence 554223333 688999999999999988762 2 56789999999999876
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.43 E-value=8.8e-14 Score=143.84 Aligned_cols=40 Identities=15% Similarity=0.232 Sum_probs=24.5
Q ss_pred CcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCC
Q 003387 688 LFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSG 729 (824)
Q Consensus 688 ~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 729 (824)
..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+..
T Consensus 147 ~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 147 GFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp GGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred ccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 3445566666666665433 556667777777777666554
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.41 E-value=3.5e-13 Score=134.15 Aligned_cols=132 Identities=23% Similarity=0.252 Sum_probs=93.3
Q ss_pred cccccCCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCcc-CCCCCcceEEeecCCCCCccChhhhh
Q 003387 487 CLDDYDSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSLNSLPSSLLS 565 (824)
Q Consensus 487 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~~i~~ 565 (824)
++..+.++++.|.+.++... ......|..+++|++|++++|.++.+|.. +..+++|++|++++|.+..+|...+.
T Consensus 22 ~p~~~~~~l~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 97 (208)
T 2o6s_A 22 VPTGIPAQTTYLDLETNSLK----SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFD 97 (208)
T ss_dssp CCSCCCTTCSEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCCCCCCcEEEcCCCccC----cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhc
Confidence 44444667788887777653 23445677788888888888887766654 46788888888888888877776557
Q ss_pred cCCCccEeecCCccccccchh-hhccccCceecCCCccCCCCCCC-CCCCCCCCCeeecc
Q 003387 566 NLLNLYTLDMPFSYIDHTADE-FWKMNKLRHLNFGSITLPAHPGK-FCGSLENLNFISAL 623 (824)
Q Consensus 566 ~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~~~~~~p-~i~~L~~L~~l~~~ 623 (824)
++++|++|++++|.+..+|.. +..+++|++|++++|.+.. ..+ .++.+++|+.|++.
T Consensus 98 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 98 KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLH 156 (208)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECC
T ss_pred CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce-eCHHHhccCCCccEEEec
Confidence 888888888888877777655 6778888888888877762 222 35556666666655
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.40 E-value=8.5e-13 Score=132.48 Aligned_cols=151 Identities=18% Similarity=0.263 Sum_probs=106.0
Q ss_pred cEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCcccccc-chhhhccccCceecCCCcc
Q 003387 524 RVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHT-ADEFWKMNKLRHLNFGSIT 602 (824)
Q Consensus 524 r~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~ 602 (824)
+.++++++.++.+|..+. .+|++|++++|.+..+|...|..+++|++|+|++|.+..+ |..|..+++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 678888888888888765 6889999999999888875558899999999999988877 6678889999999888887
Q ss_pred CCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCccEE
Q 003387 603 LPAHPGKFCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKI 682 (824)
Q Consensus 603 ~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l 682 (824)
+.. +| ...+..+++|+.|+++++. ++.+
T Consensus 92 l~~--l~--------------------~~~f~~l~~L~~L~L~~N~------------------------------l~~~ 119 (220)
T 2v9t_B 92 ITE--LP--------------------KSLFEGLFSLQLLLLNANK------------------------------INCL 119 (220)
T ss_dssp CCC--CC--------------------TTTTTTCTTCCEEECCSSC------------------------------CCCC
T ss_pred CCc--cC--------------------HhHccCCCCCCEEECCCCC------------------------------CCEe
Confidence 752 22 1114555666666666552 1111
Q ss_pred EeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccC
Q 003387 683 VLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYS 728 (824)
Q Consensus 683 ~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~ 728 (824)
....+..+++|+.|+|++|.+....+..+..+++|+.|++++|.+.
T Consensus 120 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 120 RVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 1122234456666666677666555566777788888888777654
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.39 E-value=8e-15 Score=168.20 Aligned_cols=120 Identities=22% Similarity=0.226 Sum_probs=94.5
Q ss_pred CCCeEEEeccCCCCCccEEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCcc
Q 003387 664 CLESLKLANESKMPRLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLK 743 (824)
Q Consensus 664 ~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~ 743 (824)
.|+.|++++| .++.+ ..+..+++|+.|+|++|.+. .+|..++++++|+.|+|++|.+.+ ++ .++.+++|+
T Consensus 442 ~L~~L~Ls~n----~l~~l--p~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~ 511 (567)
T 1dce_A 442 DVRVLHLAHK----DLTVL--CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQ 511 (567)
T ss_dssp TCSEEECTTS----CCSSC--CCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCC
T ss_pred CceEEEecCC----CCCCC--cCccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCc
Confidence 5888888876 34443 23567889999999999987 678889999999999999998886 44 678899999
Q ss_pred EEeeccCCCCccc--eeccCcccCccEEEEecCCCCCCCcccc----ccCccCcEEEe
Q 003387 744 VLHLKSMLWLEEW--TMGNAAMPKLECLIINPCAYLKKMPEQL----WYIKSLNKFDC 795 (824)
Q Consensus 744 ~L~L~~~~~l~~l--~~~~~~lp~L~~L~l~~c~~l~~lp~~l----~~l~~L~~L~l 795 (824)
+|+|++|. +..+ |..++.+++|+.|++++|+.. .+|+.+ ..+|+|+.|++
T Consensus 512 ~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~l~-~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 512 ELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSGGG-GSSSCTTHHHHHCTTCSEEEC
T ss_pred EEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCcCC-CCccHHHHHHHHCcccCccCC
Confidence 99999986 6666 778889999999999999854 444432 34788988863
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.39 E-value=1.6e-12 Score=148.30 Aligned_cols=189 Identities=19% Similarity=0.162 Sum_probs=137.4
Q ss_pred cceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCceecCCCccCCCCCCCCCCCCCCCCeeeccC
Q 003387 545 LLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKFCGSLENLNFISALH 624 (824)
Q Consensus 545 ~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~~~p~i~~L~~L~~l~~~~ 624 (824)
+|++|+|++|.++.+|..+ +++|++|+|++|.++.+| ..+++|++|++++|.+.. +|.+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~--ip~l------------- 118 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST--LPEL------------- 118 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC--CCCC-------------
T ss_pred CccEEEeCCCCCCccCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC--cchh-------------
Confidence 8999999999999999877 378999999999999999 568999999999998863 3321
Q ss_pred CCcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCccCcCCCceEEEEEcccCC
Q 003387 625 PCCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYLFPHSLTHLSFSNTDLM 704 (824)
Q Consensus 625 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~ 704 (824)
.. +|+.|++++|. ...+|. .+++|+.|++++| .++.+. . .+++|+.|+|++|.+.
T Consensus 119 ---------~~--~L~~L~Ls~N~---l~~lp~---~l~~L~~L~Ls~N----~l~~lp--~--~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 119 ---------PA--SLKHLDVDNNQ---LTMLPE---LPALLEYINADNN----QLTMLP--E--LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp ---------CT--TCCEEECCSSC---CSCCCC---CCTTCCEEECCSS----CCSCCC--C--CCTTCCEEECCSSCCS
T ss_pred ---------hc--CCCEEECCCCc---CCCCCC---cCccccEEeCCCC----ccCcCC--C--cCCCcCEEECCCCCCC
Confidence 11 56666666653 111333 4567778887766 233321 1 4678999999999876
Q ss_pred CCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCc-------cEEeeccCCCCccceeccCcccCccEEEEecCCCC
Q 003387 705 DDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNL-------KVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAYL 777 (824)
Q Consensus 705 ~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L-------~~L~L~~~~~l~~l~~~~~~lp~L~~L~l~~c~~l 777 (824)
+ +|. +. ++|+.|+|++|.+.. ++. +.. +| +.|+|++|. ++.+|..+..+++|+.|++++|+..
T Consensus 174 ~-lp~-l~--~~L~~L~Ls~N~L~~--lp~-~~~--~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 174 F-LPE-LP--ESLEALDVSTNLLES--LPA-VPV--RNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp C-CCC-CC--TTCCEEECCSSCCSS--CCC-CC----------CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred C-cch-hh--CCCCEEECcCCCCCc--hhh-HHH--hhhcccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeCCcCC
Confidence 5 444 55 899999999888773 232 222 66 999999875 7778887778999999999999877
Q ss_pred CCCccccccCcc
Q 003387 778 KKMPEQLWYIKS 789 (824)
Q Consensus 778 ~~lp~~l~~l~~ 789 (824)
..+|..+..+++
T Consensus 244 ~~~p~~l~~l~~ 255 (571)
T 3cvr_A 244 SRIRESLSQQTA 255 (571)
T ss_dssp HHHHHHHHHHHH
T ss_pred CcCHHHHHHhhc
Confidence 767766665443
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.38 E-value=1.5e-12 Score=130.75 Aligned_cols=153 Identities=17% Similarity=0.226 Sum_probs=109.2
Q ss_pred ccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccC-hhhhhcCCCccEeecCCccccccch-hhhccccCceecCCC
Q 003387 523 LRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLP-SSLLSNLLNLYTLDMPFSYIDHTAD-EFWKMNKLRHLNFGS 600 (824)
Q Consensus 523 Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~ 600 (824)
-++++++++.++.+|..+.. .+++|+|++|.+..++ ...|.++++|++|+|++|.+..++. .+..+++|++|++++
T Consensus 13 ~~~l~~s~n~l~~iP~~~~~--~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TTEEECCSSCCSSCCSCCCT--TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEeEeCCCCcccCccCCCC--CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 36899999999999987754 5689999999999884 3444899999999999999988875 588999999999998
Q ss_pred ccCCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCcc
Q 003387 601 ITLPAHPGKFCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLS 680 (824)
Q Consensus 601 ~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~ 680 (824)
|.+.. + ....+..+++|+.|+++++. ++
T Consensus 91 N~l~~--~--------------------~~~~~~~l~~L~~L~Ls~N~------------------------------l~ 118 (220)
T 2v70_A 91 NRLEN--V--------------------QHKMFKGLESLKTLMLRSNR------------------------------IT 118 (220)
T ss_dssp SCCCC--C--------------------CGGGGTTCSSCCEEECTTSC------------------------------CC
T ss_pred CccCc--c--------------------CHhHhcCCcCCCEEECCCCc------------------------------CC
Confidence 88752 1 11125566667777666652 11
Q ss_pred EEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCC
Q 003387 681 KIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSG 729 (824)
Q Consensus 681 ~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 729 (824)
.+....+..+++|+.|+|++|.+.+..+..+..+++|+.|++++|.+..
T Consensus 119 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 119 CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred eECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 1111122345666777777777766667777788888888888776653
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.38 E-value=2.9e-13 Score=147.01 Aligned_cols=171 Identities=20% Similarity=0.275 Sum_probs=91.0
Q ss_pred cEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhh-cCCCccEeecCCccccccch-hhhccccCceecCCCc
Q 003387 524 RVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLS-NLLNLYTLDMPFSYIDHTAD-EFWKMNKLRHLNFGSI 601 (824)
Q Consensus 524 r~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~-~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~ 601 (824)
++++++++.++.+|..+.. ++++|+|++|.+..++...+. ++++|++|+|++|.+..+|. .+..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~~--~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCCT--TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCCC--CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 5667777777666665543 466777777777766665544 67777777777777766653 3667777777777776
Q ss_pred cCCCCCCC-CCCCCCCCCeeeccCCC--cchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCC
Q 003387 602 TLPAHPGK-FCGSLENLNFISALHPC--CCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPR 678 (824)
Q Consensus 602 ~~~~~~~p-~i~~L~~L~~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~ 678 (824)
.+.. ..+ .+..+++|+.|+++.+. ...+..+..+++|+.|+++++.
T Consensus 99 ~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~------------------------------ 147 (361)
T 2xot_A 99 HLHT-LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ------------------------------ 147 (361)
T ss_dssp CCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC------------------------------
T ss_pred cCCc-CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc------------------------------
Confidence 6542 111 23333333333333110 0111114444555555554442
Q ss_pred ccEEEeCcc---CcCCCceEEEEEcccCCCCCcccccCCCC--CCeEEeecccc
Q 003387 679 LSKIVLAEY---LFPHSLTHLSFSNTDLMDDPMPTLEKLPL--LQVLKLKQNSY 727 (824)
Q Consensus 679 L~~l~l~~~---~~~~~L~~L~L~~~~l~~~~~~~l~~l~~--L~~L~L~~~~~ 727 (824)
++.+....+ ..+++|+.|+|++|.+....+..+..++. |+.|+|.+|.+
T Consensus 148 l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 148 ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred CCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence 222111111 33566666666666665444445556665 36667766554
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.37 E-value=2.7e-12 Score=129.66 Aligned_cols=117 Identities=21% Similarity=0.219 Sum_probs=92.4
Q ss_pred CcccccccCCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCcc-CCCCCcceEEeecCCCCCccChh
Q 003387 484 DFACLDDYDSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSLNSLPSS 562 (824)
Q Consensus 484 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~~ 562 (824)
...+|..+.++++.|.+.++.... ..+..|..+++|++|+|++|.+..+|.. +..+++|++|+|++|.+..+|..
T Consensus 31 l~~ip~~~~~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 106 (229)
T 3e6j_A 31 HASVPAGIPTNAQILYLHDNQITK----LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSA 106 (229)
T ss_dssp CSSCCSCCCTTCSEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cCccCCCCCCCCCEEEcCCCccCc----cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChh
Confidence 334555557888888888877642 4456778888888888888888877754 57788888888888888888877
Q ss_pred hhhcCCCccEeecCCccccccchhhhccccCceecCCCccCC
Q 003387 563 LLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLP 604 (824)
Q Consensus 563 i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~ 604 (824)
.|..+++|++|+|++|.+..+|..+..+++|++|++++|.+.
T Consensus 107 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp TTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCC
T ss_pred HhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCC
Confidence 668888888888888888888888888888888888888775
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.37 E-value=1.1e-12 Score=135.59 Aligned_cols=152 Identities=17% Similarity=0.172 Sum_probs=100.3
Q ss_pred hhcccCcccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCce
Q 003387 516 FCGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRH 595 (824)
Q Consensus 516 ~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~ 595 (824)
.+..+++|++|++++|.++.+| .+..+++|++|++++|.+..+|. + .++++|++|++++|.+..+|... . ++|++
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l-~~l~~L~~L~L~~N~l~~l~~~~-~-~~L~~ 110 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-L-KDLTKLEELSVNRNRLKNLNGIP-S-ACLSR 110 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G-TTCSSCCEEECCSSCCSCCTTCC-C-SSCCE
T ss_pred chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-h-ccCCCCCEEECCCCccCCcCccc-c-CcccE
Confidence 3566777777777777777666 56777777777777777777766 4 77777777777777777766532 3 77777
Q ss_pred ecCCCccCCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCC
Q 003387 596 LNFGSITLPAHPGKFCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESK 675 (824)
Q Consensus 596 L~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~ 675 (824)
|++++|.+.. + +. +..+++|+.|+++++. ...++ .+..+++|+.|++++|
T Consensus 111 L~L~~N~l~~--~---------------------~~-l~~l~~L~~L~Ls~N~---i~~~~-~l~~l~~L~~L~L~~N-- 160 (263)
T 1xeu_A 111 LFLDNNELRD--T---------------------DS-LIHLKNLEILSIRNNK---LKSIV-MLGFLSKLEVLDLHGN-- 160 (263)
T ss_dssp EECCSSCCSB--S---------------------GG-GTTCTTCCEEECTTSC---CCBCG-GGGGCTTCCEEECTTS--
T ss_pred EEccCCccCC--C---------------------hh-hcCcccccEEECCCCc---CCCCh-HHccCCCCCEEECCCC--
Confidence 7777776642 2 22 5566666777666663 11222 4666777777777765
Q ss_pred CCCccEEEeCccCcCCCceEEEEEcccCCCC
Q 003387 676 MPRLSKIVLAEYLFPHSLTHLSFSNTDLMDD 706 (824)
Q Consensus 676 ~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~ 706 (824)
.++.+ ..+..+++|+.|++++|.+...
T Consensus 161 --~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 161 --EITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp --CCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred --cCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 23333 4446677888888888876544
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.36 E-value=2.2e-13 Score=161.24 Aligned_cols=149 Identities=20% Similarity=0.173 Sum_probs=91.0
Q ss_pred CCeeEEEEEecCCCccccccc--CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCccCCCCCcceE
Q 003387 471 KKAKRLNAVEREGDFACLDDY--DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPSGIENLFLLRY 548 (824)
Q Consensus 471 ~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~ 548 (824)
..++++++. .+.....+... ..+|+.+.+............++..|..++.|++|+|++|.+..+|..++++++|++
T Consensus 173 ~~~~~l~L~-~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKIELF-ANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CccceEEee-CCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 446677775 33332233222 445555544433221101124577889999999999999999999999999999999
Q ss_pred EeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCceecCCCccCCCCCCC-CCCCCCCCCeeecc
Q 003387 549 LKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGK-FCGSLENLNFISAL 623 (824)
Q Consensus 549 L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~~~p-~i~~L~~L~~l~~~ 623 (824)
|+|++|.++.+|..+ ++|++|++|+|++|.+..+|..|+.|++|++|+|++|.+. .+| .+++|++|+.|+++
T Consensus 252 L~Ls~N~l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~--~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 252 LYLNGNSLTELPAEI-KNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT--TLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp CBCTTSCCSCCCGGG-GGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCC--CCCSSTTSCTTCCCEECT
T ss_pred EEeeCCcCcccChhh-hCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCC--ccChhhhcCCCccEEeCC
Confidence 999999999999988 9999999999999999999999999999999999999886 555 56666666666555
No 120
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.35 E-value=3.3e-12 Score=128.15 Aligned_cols=114 Identities=20% Similarity=0.226 Sum_probs=76.6
Q ss_pred cccccCCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccC-CccCCCCCcceEEeecCCCCCccChhhhh
Q 003387 487 CLDDYDSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLNSLPSSLLS 565 (824)
Q Consensus 487 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~ 565 (824)
+|..+.++++.|.+.++... .+.+..|..+++|++|+|++|.+..+ |..+..+++|++|+|++|.+..+|..+|.
T Consensus 26 iP~~l~~~l~~L~l~~n~i~----~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~ 101 (220)
T 2v9t_B 26 IPTNLPETITEIRLEQNTIK----VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFE 101 (220)
T ss_dssp CCSSCCTTCCEEECCSSCCC----EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTT
T ss_pred CCCccCcCCCEEECCCCcCC----CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHcc
Confidence 44444566777777666553 23445666777777777777777644 56677777777777777777777776556
Q ss_pred cCCCccEeecCCccccccc-hhhhccccCceecCCCccCC
Q 003387 566 NLLNLYTLDMPFSYIDHTA-DEFWKMNKLRHLNFGSITLP 604 (824)
Q Consensus 566 ~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~~ 604 (824)
++++|++|+|++|.+..++ ..+..+++|++|++++|.+.
T Consensus 102 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 141 (220)
T 2v9t_B 102 GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC
Confidence 7777777777777777663 44667777777777777665
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.35 E-value=9e-15 Score=167.76 Aligned_cols=120 Identities=22% Similarity=0.224 Sum_probs=61.8
Q ss_pred cceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCC
Q 003387 639 LRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQ 718 (824)
Q Consensus 639 L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~ 718 (824)
|+.|+++++. ...+|. ++.+++|+.|++++| +++.+ ...+..+++|+.|+|++|.+++ +| .++++++|+
T Consensus 443 L~~L~Ls~n~---l~~lp~-~~~l~~L~~L~Ls~N----~l~~l-p~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~ 511 (567)
T 1dce_A 443 VRVLHLAHKD---LTVLCH-LEQLLLVTHLDLSHN----RLRAL-PPALAALRCLEVLQASDNALEN-VD-GVANLPRLQ 511 (567)
T ss_dssp CSEEECTTSC---CSSCCC-GGGGTTCCEEECCSS----CCCCC-CGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCC
T ss_pred ceEEEecCCC---CCCCcC-ccccccCcEeecCcc----ccccc-chhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCc
Confidence 4555555542 122332 455555555555544 23322 1233455566666666666543 33 566666666
Q ss_pred eEEeeccccCCCeeeecCCCCCCccEEeeccCCCCccceeccC----cccCccEEE
Q 003387 719 VLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNA----AMPKLECLI 770 (824)
Q Consensus 719 ~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~----~lp~L~~L~ 770 (824)
.|+|++|.+.+...+..++.+++|+.|+|++|+ +..++.... .+|+|+.|+
T Consensus 512 ~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp EEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred EEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 666666666542214445566666666666654 444433222 266776664
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.34 E-value=4e-12 Score=127.50 Aligned_cols=138 Identities=14% Similarity=0.144 Sum_probs=81.5
Q ss_pred ccccccCCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCc-cCCCCCcceEEeecCCCCCccChhhh
Q 003387 486 ACLDDYDSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLNSLPSSLL 564 (824)
Q Consensus 486 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~~i~ 564 (824)
.+|..+.+.++.|.+.++.... ......|..+++|++|+|++|.++.++. .+..+++|++|+|++|.+..+|...|
T Consensus 25 ~iP~~~~~~~~~L~L~~N~l~~---~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 101 (220)
T 2v70_A 25 KIPEHIPQYTAELRLNNNEFTV---LEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMF 101 (220)
T ss_dssp SCCSCCCTTCSEEECCSSCCCE---ECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGG
T ss_pred cCccCCCCCCCEEEcCCCcCCc---cCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHh
Confidence 3444445555666666655431 1122345666666666666666664443 56666666666666666666666544
Q ss_pred hcCCCccEeecCCcccccc-chhhhccccCceecCCCccCCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCccceEE
Q 003387 565 SNLLNLYTLDMPFSYIDHT-ADEFWKMNKLRHLNFGSITLPAHPGKFCGSLENLNFISALHPCCCTEDILGRLPNLRNLR 643 (824)
Q Consensus 565 ~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~ 643 (824)
.++++|++|+|++|.+..+ |..+..+++|++|++++|.+.. ..+..+..+++|+.|+
T Consensus 102 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~----------------------~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 102 KGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT----------------------VAPGAFDTLHSLSTLN 159 (220)
T ss_dssp TTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCC----------------------BCTTTTTTCTTCCEEE
T ss_pred cCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCE----------------------ECHHHhcCCCCCCEEE
Confidence 6666666666666666665 3446666666666666666542 1122256666777777
Q ss_pred Eeccc
Q 003387 644 IRGDL 648 (824)
Q Consensus 644 l~~~~ 648 (824)
++++.
T Consensus 160 L~~N~ 164 (220)
T 2v70_A 160 LLANP 164 (220)
T ss_dssp CCSCC
T ss_pred ecCcC
Confidence 76664
No 123
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.33 E-value=2.5e-12 Score=129.98 Aligned_cols=152 Identities=22% Similarity=0.266 Sum_probs=94.7
Q ss_pred ccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchh-hhccccCceecCCCc
Q 003387 523 LRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADE-FWKMNKLRHLNFGSI 601 (824)
Q Consensus 523 Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~ 601 (824)
.+.++.+++.+..+|..+. .+|++|+|++|.+..+++..|.++++|++|+|++|.+..+|.. +..+++|++|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4567777777777777664 6788888888888877554447888888888888888777754 577888888888877
Q ss_pred cCCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCccE
Q 003387 602 TLPAHPGKFCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSK 681 (824)
Q Consensus 602 ~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~ 681 (824)
.+.. +| ...+..+++|+.|+++++. ...+|..+..
T Consensus 99 ~l~~--l~--------------------~~~~~~l~~L~~L~Ls~N~---l~~lp~~~~~-------------------- 133 (229)
T 3e6j_A 99 QLTV--LP--------------------SAVFDRLVHLKELFMCCNK---LTELPRGIER-------------------- 133 (229)
T ss_dssp CCCC--CC--------------------TTTTTTCTTCCEEECCSSC---CCSCCTTGGG--------------------
T ss_pred cCCc--cC--------------------hhHhCcchhhCeEeccCCc---ccccCccccc--------------------
Confidence 7652 11 1114455666666666552 1122222233
Q ss_pred EEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCC
Q 003387 682 IVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSG 729 (824)
Q Consensus 682 l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 729 (824)
+++|+.|+|++|.+....+..+..+++|+.|++.+|.+..
T Consensus 134 --------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 134 --------LTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp --------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred --------CCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 3444455555555544444456666777777776665543
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.29 E-value=5.5e-12 Score=118.09 Aligned_cols=131 Identities=19% Similarity=0.097 Sum_probs=95.1
Q ss_pred cccCcccEEEeeCccCc--cCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccc-cchhhhccccCc
Q 003387 518 GMFKLLRVLDLGSLVLI--QYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDH-TADEFWKMNKLR 594 (824)
Q Consensus 518 ~~~~~Lr~L~L~~~~i~--~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~-lp~~i~~L~~L~ 594 (824)
...+.|+.|++++|.+. .+|..++.+++|++|++++|.+..+ ..+ +++++|++|++++|.+.. +|..++.+++|+
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANL-PKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTC-CCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhh-hcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 44577889999998887 8888888889999999999888877 555 888999999999888887 777777889999
Q ss_pred eecCCCccCCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEecccccchhhH-HHHhccCCCCCeEEEe
Q 003387 595 HLNFGSITLPAHPGKFCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDLSYNQSLL-SKSLCRLSCLESLKLA 671 (824)
Q Consensus 595 ~L~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l-~~~l~~l~~L~~L~l~ 671 (824)
+|++++|.+.. + ..+.. +..+++|+.|+++++.-...... ...+..+++|+.|+++
T Consensus 92 ~L~ls~N~i~~--~------------------~~~~~-~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKD--L------------------STIEP-LKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCS--H------------------HHHGG-GGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCC--h------------------HHHHH-HhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 99888887752 0 11122 66777788887777741111111 1356667777777654
No 125
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.29 E-value=2.8e-11 Score=134.07 Aligned_cols=266 Identities=15% Similarity=0.124 Sum_probs=156.1
Q ss_pred CCCceechhhHHHHHHHH-Hc---C-CCCeEEEEE--EcCCCChHHHHHHHHhCCccccC-----CCc-eeEEEECCCCC
Q 003387 155 SRDTVGLDDRMEELLDLL-IE---G-PPQLSVVAI--LDSIGLDKTAFAGEAYNSSYVKH-----YFD-CHAWITEPYSN 221 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L-~~---~-~~~~~vi~I--~G~gGvGKTtLa~~v~~~~~~~~-----~F~-~~~wv~~~vs~ 221 (824)
+..++||+.+++++.+++ .. + ......+.| +|++|+||||||+.+++ +... .|+ .++|+. +..
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~ 96 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVK--RVSEAAAKEGLTVKQAYVN--AFN 96 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHH--HHHHHHHHTTCCEEEEEEE--GGG
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHH--HHHHHHhccCCceeEEEEE--CCC
Confidence 468999999999999998 42 2 012345555 99999999999999998 3332 123 357777 767
Q ss_pred CCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHhcC--CCeEEEEEecCCCh--------hhHHHHHhhC---CC
Q 003387 222 EYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLM--TKRYLIVIDDVWSI--------DMWDVIQEIL---PD 288 (824)
Q Consensus 222 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~--------~~~~~l~~~~---~~ 288 (824)
..+...++..++.+++...+ ....+.......+.+.+. +++++||+||+|.. +.+..+...+ +.
T Consensus 97 ~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~ 173 (412)
T 1w5s_A 97 APNLYTILSLIVRQTGYPIQ---VRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPS 173 (412)
T ss_dssp CCSHHHHHHHHHHHHTCCCC---CTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCC
T ss_pred CCCHHHHHHHHHHHhCCCCC---CCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhccc
Confidence 77899999999999976432 122344566677777775 68999999999864 2233332222 21
Q ss_pred CC--CCcEEEEEechHHHHh-----------hccccc--C------------------CcCcCccccchhhHHHhcC---
Q 003387 289 NQ--NGSRVLITLTDIRIII-----------SFQFED--G------------------ENMRLDLVPTGGPLRATYK--- 332 (824)
Q Consensus 289 ~~--~gs~ilvTtR~~~v~~-----------~f~~~~--~------------------~~~~~~~~~~~~~i~~~c~--- 332 (824)
.+ ....+|+||+...+.. .|.... . .....--.+....|++.|+
T Consensus 174 ~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 253 (412)
T 1w5s_A 174 RDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDK 253 (412)
T ss_dssp TTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGG
T ss_pred CCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhc
Confidence 12 3455888887554321 111000 0 0000111345667888999
Q ss_pred ---CCchhHHHHHhHHH---hhhhhhhc-----cCCC-cc--ccccc--c-cCCCCchHHHhHhccCC--CCceechhHH
Q 003387 333 ---GRPFLILYHGSISL---EENIREAV-----ETPL-GL--RYIKC--L-MLPFCLKPCFIYLSVFP--AHQEISTRQL 393 (824)
Q Consensus 333 ---GlPlai~~~~~~l~---~~~~~~~~-----~~~~-~~--~~~l~--~-~L~~~lk~cfl~~s~fp--~~~~i~~~~L 393 (824)
|.|..+..+..... .....+.+ .... .. ...+. + .||.+.+.++..++.+. .+..++..++
T Consensus 254 ~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~ 333 (412)
T 1w5s_A 254 GGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEAASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLL 333 (412)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHH
Confidence 99976655544321 11000000 0000 01 11121 1 78888888888888653 2335555555
Q ss_pred HHHHH--H---cCCCCCChHHHHHHHHHHHHhccccceee
Q 003387 394 YQLWI--A---EGFIPDNSEATAESYLEQLIKEGFVEAKK 428 (824)
Q Consensus 394 i~~W~--a---~g~i~~~~e~~~~~~~~~Lv~rsllq~~~ 428 (824)
...+. + .|. .+........+++.|.+.+++....
T Consensus 334 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 334 RQRYEDASLTMYNV-KPRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp HHHHHHHHHHHSCC-CCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHhCCCEEeec
Confidence 54442 2 232 1123345678999999999998764
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.29 E-value=4.9e-12 Score=121.06 Aligned_cols=83 Identities=24% Similarity=0.153 Sum_probs=56.2
Q ss_pred cCcccEEEeeCccCc--cCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccc-cchhhhccccCcee
Q 003387 520 FKLLRVLDLGSLVLI--QYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDH-TADEFWKMNKLRHL 596 (824)
Q Consensus 520 ~~~Lr~L~L~~~~i~--~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L 596 (824)
.+.|++|++++|.+. .+|..+..+++|++|++++|.+..+ ..+ +.+++|++|++++|.+.. +|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNL-PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSC-CCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhh-ccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 356777777777766 6666666677777777777776666 444 667777777777776666 55556667777777
Q ss_pred cCCCccCC
Q 003387 597 NFGSITLP 604 (824)
Q Consensus 597 ~L~~~~~~ 604 (824)
++++|.+.
T Consensus 101 ~Ls~N~l~ 108 (168)
T 2ell_A 101 NLSGNKLK 108 (168)
T ss_dssp ECBSSSCC
T ss_pred eccCCccC
Confidence 77776654
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.23 E-value=1.9e-11 Score=116.88 Aligned_cols=108 Identities=19% Similarity=0.196 Sum_probs=89.1
Q ss_pred CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCccCCCCCcceEEeecCCCCCc-cChhhhhcCCCc
Q 003387 492 DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNS-LPSSLLSNLLNL 570 (824)
Q Consensus 492 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~-lp~~i~~~L~~L 570 (824)
.++++.|.+.++... ...++..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+ .++++|
T Consensus 23 ~~~L~~L~l~~n~l~---~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L 97 (168)
T 2ell_A 23 PAAVRELVLDNCKSN---DGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLA-EKLPNL 97 (168)
T ss_dssp TTSCSEEECCSCBCB---TTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHH-HHCTTC
T ss_pred cccCCEEECCCCCCC---hhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHH-hhCCCC
Confidence 577888888877653 112345578889999999999998877 778899999999999999987 55555 789999
Q ss_pred cEeecCCccccccc--hhhhccccCceecCCCccCC
Q 003387 571 YTLDMPFSYIDHTA--DEFWKMNKLRHLNFGSITLP 604 (824)
Q Consensus 571 ~~L~L~~~~l~~lp--~~i~~L~~L~~L~L~~~~~~ 604 (824)
++|++++|.+..+| ..+..+++|++|++++|.+.
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc
Confidence 99999999999886 67889999999999999876
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.23 E-value=9.2e-12 Score=116.53 Aligned_cols=108 Identities=18% Similarity=0.196 Sum_probs=90.8
Q ss_pred CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCccCCCCCcceEEeecCCCCCc-cChhhhhcCCCc
Q 003387 492 DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNS-LPSSLLSNLLNL 570 (824)
Q Consensus 492 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~-lp~~i~~~L~~L 570 (824)
.++++.|.+.++... ....+..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+ +++++|
T Consensus 16 ~~~l~~L~l~~n~l~---~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L 90 (149)
T 2je0_A 16 PSDVKELVLDNSRSN---EGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLA-EKCPNL 90 (149)
T ss_dssp GGGCSEEECTTCBCB---TTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHH-HHCTTC
T ss_pred CccCeEEEccCCcCC---hhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHh-hhCCCC
Confidence 577888888887653 123345678899999999999999877 778999999999999999998 66655 889999
Q ss_pred cEeecCCccccccc--hhhhccccCceecCCCccCC
Q 003387 571 YTLDMPFSYIDHTA--DEFWKMNKLRHLNFGSITLP 604 (824)
Q Consensus 571 ~~L~L~~~~l~~lp--~~i~~L~~L~~L~L~~~~~~ 604 (824)
++|++++|.+..+| ..++.+++|++|++++|.+.
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 99999999999876 77999999999999999876
No 129
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.23 E-value=1.7e-11 Score=133.14 Aligned_cols=167 Identities=18% Similarity=0.094 Sum_probs=117.7
Q ss_pred EEEEEecCCCcccccccCCceeEeeccCCCCCCCCcchhHhhhc-ccCcccEEEeeCccCccCC-ccCCCCCcceEEeec
Q 003387 475 RLNAVEREGDFACLDDYDSQLHSLLCCSPETRHLDPIDWEKFCG-MFKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLN 552 (824)
Q Consensus 475 ~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~-~~~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~ 552 (824)
.+... +.....+|..+.+.++.|.+.++... ......|. .+++|++|+|++|.++.+| ..+..+++|++|+|+
T Consensus 22 ~l~c~-~~~l~~iP~~~~~~l~~L~Ls~N~l~----~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 22 ILSCS-KQQLPNVPQSLPSYTALLDLSHNNLS----RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp EEECC-SSCCSSCCSSCCTTCSEEECCSSCCC----EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred EEEeC-CCCcCccCccCCCCCCEEECCCCCCC----ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 44444 34444466656677888888887663 24445565 8888999999999888666 458888999999999
Q ss_pred CCCCCccChhhhhcCCCccEeecCCcccccc-chhhhccccCceecCCCccCCCCCCC--CC---CCCCCCCeeeccCCC
Q 003387 553 IPSLNSLPSSLLSNLLNLYTLDMPFSYIDHT-ADEFWKMNKLRHLNFGSITLPAHPGK--FC---GSLENLNFISALHPC 626 (824)
Q Consensus 553 ~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~~~~~~~p--~i---~~L~~L~~l~~~~~~ 626 (824)
+|.+..+|...|.++++|++|+|++|.+..+ |..+..+++|++|+|++|.+. .+| .+ +.+++|+.|+++.+.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~--~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS--RFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--SCCGGGTC----CTTCCEEECCSSC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC--eeCHHHhcCcccCCcCCEEECCCCC
Confidence 9998888876668899999999999988877 456888899999999988887 344 23 567778888777321
Q ss_pred --cchhhhcCCCCc--cceEEEeccc
Q 003387 627 --CCTEDILGRLPN--LRNLRIRGDL 648 (824)
Q Consensus 627 --~~~~~~l~~l~~--L~~L~l~~~~ 648 (824)
......+..+++ |+.|++.++.
T Consensus 175 l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 175 LKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCccCHHHhhhccHhhcceEEecCCC
Confidence 112222455555 3677777764
No 130
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.20 E-value=6.3e-11 Score=127.93 Aligned_cols=268 Identities=11% Similarity=0.064 Sum_probs=155.6
Q ss_pred CCCCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCC------CHH
Q 003387 153 SKSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEY------DAD 226 (824)
Q Consensus 153 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~------~~~ 226 (824)
..+..++||+.+.++|.+++..+ +++.|+|++|+|||||++.+.+. . . .+|+. +.... +..
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~--~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILID--CRELYAERGHITRE 75 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEE--HHHHHHTTTCBCHH
T ss_pred CChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEE--eecccccccCCCHH
Confidence 34578999999999999998764 68999999999999999999983 3 1 66776 54332 566
Q ss_pred HHHHHHHHHhCCC---------------CCcccccccCHHHHHHHHHHhcCC-CeEEEEEecCCChhh---------HHH
Q 003387 227 QILDIVIKFLMPS---------------SRLSEIMDKNYEMKKIILHEYLMT-KRYLIVIDDVWSIDM---------WDV 281 (824)
Q Consensus 227 ~~~~~i~~~l~~~---------------~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~~~~---------~~~ 281 (824)
.+...+...+... ...+ ....+..++...+.+..+. ++++||+||++.... +..
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLE-PRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSC-GGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeec-cccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 6777776665420 0000 1123456666667666643 499999999976432 233
Q ss_pred HHhhCCCCCCCcEEEEEechHHH-Hh----------hccccc-----CC---------------cCc-CccccchhhHHH
Q 003387 282 IQEILPDNQNGSRVLITLTDIRI-II----------SFQFED-----GE---------------NMR-LDLVPTGGPLRA 329 (824)
Q Consensus 282 l~~~~~~~~~gs~ilvTtR~~~v-~~----------~f~~~~-----~~---------------~~~-~~~~~~~~~i~~ 329 (824)
+..... ..++.++|+|++.... .. .++... .. ... .--.+....|+.
T Consensus 155 L~~~~~-~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~ 233 (350)
T 2qen_A 155 FAYAYD-SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVE 233 (350)
T ss_dssp HHHHHH-HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred HHHHHH-hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 332221 1247889999887543 11 111100 00 000 011235667899
Q ss_pred hcCCCchhHHHHHhHHHhhhhhhhc-cCCC-cccccc--cc-cC---CCCchHHHhHhccCCCCceechhHHHHHHHHcC
Q 003387 330 TYKGRPFLILYHGSISLEENIREAV-ETPL-GLRYIK--CL-ML---PFCLKPCFIYLSVFPAHQEISTRQLYQLWIAEG 401 (824)
Q Consensus 330 ~c~GlPlai~~~~~~l~~~~~~~~~-~~~~-~~~~~l--~~-~L---~~~lk~cfl~~s~fp~~~~i~~~~Li~~W~a~g 401 (824)
.|+|.|+++..++..+......+.. .... .+...+ .+ .+ ++..+..+..+|. + .++...+........
T Consensus 234 ~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~la~---g-~~~~~~l~~~~~~~~ 309 (350)
T 2qen_A 234 LLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDILRAIAL---G-YNRWSLIRDYLAVKG 309 (350)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-CCSHHHHHHHHHHTT
T ss_pred HhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHh---C-CCCHHHHHHHHHHHh
Confidence 9999999999888754211000110 0000 011111 01 33 5677888888887 2 235555555432211
Q ss_pred CCCCChHHHHHHHHHHHHhccccceeecCCCCcEEEEEc-CccHHHHH
Q 003387 402 FIPDNSEATAESYLEQLIKEGFVEAKKRKAGGTINTCSI-PGRWRPVL 448 (824)
Q Consensus 402 ~i~~~~e~~~~~~~~~Lv~rsllq~~~~~~~g~~~~~~m-Hdlv~dla 448 (824)
- .........+++.|.+.+++.... + .|.+ |.++++..
T Consensus 310 -~-~~~~~~~~~~l~~L~~~gli~~~~----~---~y~~~~p~~~~~~ 348 (350)
T 2qen_A 310 -T-KIPEPRLYALLENLKKMNWIVEED----N---TYKIADPVVATVL 348 (350)
T ss_dssp -C-CCCHHHHHHHHHHHHHTTSEEEET----T---EEEESSHHHHHHH
T ss_pred -C-CCCHHHHHHHHHHHHhCCCEEecC----C---EEEEecHHHHHHH
Confidence 0 112345778999999999998652 2 2444 55666543
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.19 E-value=2.2e-11 Score=117.46 Aligned_cols=132 Identities=14% Similarity=0.094 Sum_probs=96.2
Q ss_pred CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCcc
Q 003387 492 DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLY 571 (824)
Q Consensus 492 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 571 (824)
+++++.|.+.++.... ++.+....++|++|++++|.++.+ ..++.+++|++|++++|.+..+|+.+++.+++|+
T Consensus 18 ~~~L~~L~l~~n~l~~-----i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV-----IENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp TTSCEEEECTTSCCCS-----CCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCceEEEeeCCCCch-----hHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 6778888888776542 123333344888888888888876 5688888888888888888888876668888888
Q ss_pred EeecCCccccccch--hhhccccCceecCCCccCCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEeccc
Q 003387 572 TLDMPFSYIDHTAD--EFWKMNKLRHLNFGSITLPAHPGKFCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDL 648 (824)
Q Consensus 572 ~L~L~~~~l~~lp~--~i~~L~~L~~L~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 648 (824)
+|++++|.+..+|. .+..+++|++|++++|.+.. +| ... ...+..+++|+.|+++.+.
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~--~~----------------~~~-~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN--KK----------------HYR-LYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG--ST----------------THH-HHHHHHCTTCSEETTEECC
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC--cH----------------hHH-HHHHHHCCccceeCCCcCC
Confidence 88888888888876 68888888888888887651 11 000 1126677888888887764
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.18 E-value=2.1e-11 Score=117.57 Aligned_cols=131 Identities=15% Similarity=0.083 Sum_probs=103.8
Q ss_pred hhcccCcccEEEeeCccCccCCccCCCCC-cceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchhh-hccccC
Q 003387 516 FCGMFKLLRVLDLGSLVLIQYPSGIENLF-LLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEF-WKMNKL 593 (824)
Q Consensus 516 ~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~-~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i-~~L~~L 593 (824)
.+..++.|++|++++|.++.+|. +..+. +|++|++++|.+..+ ..+ +++++|++|++++|.+..+|..+ ..+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGF-PLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCC-CCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-ccc-ccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 35678899999999999998865 55555 999999999999988 455 99999999999999999998665 899999
Q ss_pred ceecCCCccCCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEecccccchhhHHH----HhccCCCCCeEE
Q 003387 594 RHLNFGSITLPAHPGKFCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDLSYNQSLLSK----SLCRLSCLESLK 669 (824)
Q Consensus 594 ~~L~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~----~l~~l~~L~~L~ 669 (824)
++|++++|.+.. +| .+.. +..+++|+.|+++++. ...++. .+..+++|+.|+
T Consensus 91 ~~L~L~~N~i~~--~~------------------~~~~-l~~l~~L~~L~l~~N~---i~~~~~~~~~~~~~l~~L~~Ld 146 (176)
T 1a9n_A 91 TELILTNNSLVE--LG------------------DLDP-LASLKSLTYLCILRNP---VTNKKHYRLYVIYKVPQVRVLD 146 (176)
T ss_dssp CEEECCSCCCCC--GG------------------GGGG-GGGCTTCCEEECCSSG---GGGSTTHHHHHHHHCTTCSEET
T ss_pred CEEECCCCcCCc--ch------------------hhHh-hhcCCCCCEEEecCCC---CCCcHhHHHHHHHHCCccceeC
Confidence 999999998752 11 1112 7788899999999885 222333 467788888888
Q ss_pred Eecc
Q 003387 670 LANE 673 (824)
Q Consensus 670 l~~~ 673 (824)
++.+
T Consensus 147 ~~~n 150 (176)
T 1a9n_A 147 FQKV 150 (176)
T ss_dssp TEEC
T ss_pred CCcC
Confidence 7764
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.15 E-value=3.8e-12 Score=125.51 Aligned_cols=131 Identities=18% Similarity=0.156 Sum_probs=101.8
Q ss_pred hHhhhcccCcccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhcccc
Q 003387 513 WEKFCGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNK 592 (824)
Q Consensus 513 ~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~ 592 (824)
++..+..+++|++|++++|.++.+| .+..+++|++|++++|.+..+|..+ ..+++|++|++++|.+..+| .+..+++
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~-~~~~~L~~L~L~~N~l~~l~-~~~~l~~ 116 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLD-AVADTLEELWISYNQIASLS-GIEKLVN 116 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHH-HHHHHCSEEEEEEEECCCHH-HHHHHHH
T ss_pred hhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchh-hcCCcCCEEECcCCcCCcCC-ccccCCC
Confidence 3457888999999999999998888 8888999999999999999999877 88899999999999998888 5889999
Q ss_pred CceecCCCccCCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEecccccchhhH----------HHHhccC
Q 003387 593 LRHLNFGSITLPAHPGKFCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDLSYNQSLL----------SKSLCRL 662 (824)
Q Consensus 593 L~~L~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l----------~~~l~~l 662 (824)
|++|++++|.+.. + ..+.. +..+++|+.|+++++. ..... ...+..+
T Consensus 117 L~~L~l~~N~i~~--~------------------~~~~~-l~~l~~L~~L~l~~N~--l~~~~~~~~~~~~~~~~~~~~l 173 (198)
T 1ds9_A 117 LRVLYMSNNKITN--W------------------GEIDK-LAALDKLEDLLLAGNP--LYNDYKENNATSEYRIEVVKRL 173 (198)
T ss_dssp SSEEEESEEECCC--H------------------HHHHH-HTTTTTCSEEEECSCH--HHHHHHTTTTHHHHHHHHHHHC
T ss_pred CCEEECCCCcCCc--h------------------hHHHH-HhcCCCCCEEEecCCc--cccccccccchHHHHHHHHHhC
Confidence 9999999988752 0 11123 6778888888888774 21111 1235666
Q ss_pred CCCCeEE
Q 003387 663 SCLESLK 669 (824)
Q Consensus 663 ~~L~~L~ 669 (824)
++|+.|+
T Consensus 174 ~~L~~Ld 180 (198)
T 1ds9_A 174 PNLKKLD 180 (198)
T ss_dssp SSCSEEC
T ss_pred CCcEEEC
Confidence 7777665
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.15 E-value=9.5e-11 Score=125.40 Aligned_cols=283 Identities=13% Similarity=0.033 Sum_probs=172.8
Q ss_pred CCceeEeeccCCCCCCCCcchhHhhhcc-cCcccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhc----
Q 003387 492 DSQLHSLLCCSPETRHLDPIDWEKFCGM-FKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSN---- 566 (824)
Q Consensus 492 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~-~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~---- 566 (824)
..+++.|.+.+.-.. ..+ ..+.. +++|++|||++|.+..+...-+.++.++++.+..+ .+|...|.+
T Consensus 24 ~~~l~~L~l~g~i~~----~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGKLNA----EDF-RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEEECH----HHH-HHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETT
T ss_pred hCceeEEEEeccccH----HHH-HHHHHhhccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccc
Confidence 556777777654221 122 23333 88899999999998722211223334555555554 567666678
Q ss_pred ----CCCccEeecCCccccccchh-hhccccCceecCCCccCCCCCCC-CCCCCCCCCeeeccCCC------cchhhhcC
Q 003387 567 ----LLNLYTLDMPFSYIDHTADE-FWKMNKLRHLNFGSITLPAHPGK-FCGSLENLNFISALHPC------CCTEDILG 634 (824)
Q Consensus 567 ----L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~~~~~~p-~i~~L~~L~~l~~~~~~------~~~~~~l~ 634 (824)
|++|+.|+|.+ .++.+++. |..|++|+.|++++|.+.. ..+ .+..+.++..+...... ......+.
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~-i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~ 173 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPN-LLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI 173 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCE-ECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccc-cchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence 99999999988 88888754 8889999999998887652 222 55555555555443210 01111144
Q ss_pred CCCccc-eEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCcc-CcCCCceEEEEEcccCCCCCccccc
Q 003387 635 RLPNLR-NLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEY-LFPHSLTHLSFSNTDLMDDPMPTLE 712 (824)
Q Consensus 635 ~l~~L~-~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~-~~~~~L~~L~L~~~~l~~~~~~~l~ 712 (824)
.+.+|+ .+.+..... ....+...-....++..+.+.+.. ........ ..+++|+.|+|++|.+.......|.
T Consensus 174 ~~~~L~~~i~~~~~~~-l~~~~~~~~~~~~~~~~l~~~~~l-----~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~ 247 (329)
T 3sb4_A 174 EGEPLETTIQVGAMGK-LEDEIMKAGLQPRDINFLTIEGKL-----DNADFKLIRDYMPNLVSLDISKTNATTIPDFTFA 247 (329)
T ss_dssp ESCCCEEEEEECTTCC-HHHHHHHTTCCGGGCSEEEEEECC-----CHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTT
T ss_pred cccccceeEEecCCCc-HHHHHhhcccCccccceEEEeeee-----cHHHHHHHHHhcCCCeEEECCCCCcceecHhhhh
Confidence 556666 444443320 111111111123455555555321 00000000 2368899999998887666667799
Q ss_pred CCCCCCeEEeeccccCCCeeeecCCCCCCcc-EEeeccCCCCccce-eccCcccCccEEEEecCCCCCCCcc-ccccCcc
Q 003387 713 KLPLLQVLKLKQNSYSGRKLTCGSYGFPNLK-VLHLKSMLWLEEWT-MGNAAMPKLECLIINPCAYLKKMPE-QLWYIKS 789 (824)
Q Consensus 713 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~-~L~L~~~~~l~~l~-~~~~~lp~L~~L~l~~c~~l~~lp~-~l~~l~~ 789 (824)
+|++|+.|.+.+| +.. .-...+.++++|+ .+.+.+ .++.++ ..+..+++|+.|++.++. ++.++. .+.++++
T Consensus 248 ~~~~L~~l~l~~n-i~~-I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~ 322 (329)
T 3sb4_A 248 QKKYLLKIKLPHN-LKT-IGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDK-ITTLGDELFGNGVP 322 (329)
T ss_dssp TCTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSC-CCEECTTTTCTTCC
T ss_pred CCCCCCEEECCcc-cce-ehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCc-cCccchhhhcCCcc
Confidence 9999999999865 321 1223356788899 999987 467765 456778999999997765 555554 6888999
Q ss_pred CcEEEe
Q 003387 790 LNKFDC 795 (824)
Q Consensus 790 L~~L~l 795 (824)
|+.|+.
T Consensus 323 L~~ly~ 328 (329)
T 3sb4_A 323 SKLIYK 328 (329)
T ss_dssp CCEEEC
T ss_pred hhhhcc
Confidence 998863
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.14 E-value=4.2e-12 Score=150.27 Aligned_cols=160 Identities=15% Similarity=0.042 Sum_probs=98.8
Q ss_pred CCceeEeeccCCCCCCCCcchhHhhhcccCcccE-----EEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhc
Q 003387 492 DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRV-----LDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSN 566 (824)
Q Consensus 492 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~-----L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~ 566 (824)
.+.++.|.+..+.... .+..+.....|+. ++++.+.+...|..+..+.+|++|+|++|.+..+|..+ .+
T Consensus 172 ~~~~~~l~L~~n~~~~-----~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~-~~ 245 (727)
T 4b8c_D 172 TPLTPKIELFANGKDE-----ANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANI-FK 245 (727)
T ss_dssp -------------------------------------------------------CCCCCCEEECTTSCCSCCCGGG-GG
T ss_pred CCccceEEeeCCCCCc-----chhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhh-cC
Confidence 4566777776655431 1111222222333 23333444455778899999999999999999999999 79
Q ss_pred CCCccEeecCCccccccchhhhccccCceecCCCccCCCCCCC-CCCCCCCCCeeeccCC-CcchhhhcCCCCccceEEE
Q 003387 567 LLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGK-FCGSLENLNFISALHP-CCCTEDILGRLPNLRNLRI 644 (824)
Q Consensus 567 L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~~~p-~i~~L~~L~~l~~~~~-~~~~~~~l~~l~~L~~L~l 644 (824)
+++|++|+|++|.+..+|..|++|++|++|+|++|.+. .+| .+++|++|+.|+++.+ ...++..++.|++|+.|++
T Consensus 246 l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L 323 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGV 323 (727)
T ss_dssp CCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEEC
T ss_pred CCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeC
Confidence 99999999999999999999999999999999999998 667 8999999999999842 2233433889999999999
Q ss_pred ecccccchhhHHHHhcc
Q 003387 645 RGDLSYNQSLLSKSLCR 661 (824)
Q Consensus 645 ~~~~~~~~~~l~~~l~~ 661 (824)
++|. ....+|..+..
T Consensus 324 ~~N~--l~~~~p~~~~~ 338 (727)
T 4b8c_D 324 EGNP--LEKQFLKILTE 338 (727)
T ss_dssp TTSC--CCSHHHHHHHH
T ss_pred CCCc--cCCCChHHHhh
Confidence 9886 44455555544
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.11 E-value=1e-10 Score=114.53 Aligned_cols=101 Identities=17% Similarity=0.149 Sum_probs=50.5
Q ss_pred cccEEEeeCccCccCCcc--CCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchh-hhccccCceecC
Q 003387 522 LLRVLDLGSLVLIQYPSG--IENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADE-FWKMNKLRHLNF 598 (824)
Q Consensus 522 ~Lr~L~L~~~~i~~lp~~--i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L 598 (824)
.|++|++++|.+..+|.. ++.+++|++|+|++|.++.+++..|.++++|++|+|++|.+..+|.. +..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 455555555555544432 45555555555555555544322225555555555555555554432 445555555555
Q ss_pred CCccCCCCCCC-CCCCCCCCCeeecc
Q 003387 599 GSITLPAHPGK-FCGSLENLNFISAL 623 (824)
Q Consensus 599 ~~~~~~~~~~p-~i~~L~~L~~l~~~ 623 (824)
++|.+.. ..| .++.+++|+.|++.
T Consensus 110 ~~N~l~~-~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 110 YDNQISC-VMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp CSSCCCE-ECTTSSTTCTTCCEEECT
T ss_pred CCCcCCe-eCHHHhhcCCCCCEEEeC
Confidence 5555442 222 45555555555554
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.11 E-value=3.4e-10 Score=110.77 Aligned_cols=121 Identities=22% Similarity=0.237 Sum_probs=57.4
Q ss_pred cEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccch-hhhccccCceecCCCcc
Q 003387 524 RVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTAD-EFWKMNKLRHLNFGSIT 602 (824)
Q Consensus 524 r~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~ 602 (824)
++++++++.++.+|..+. .+|++|++++|.+..+|..+ .++++|++|+|++|.+..++. .|..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~-~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKEL-SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGG-GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHh-hcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 345555555555554433 34555555555555555444 555555555555555555442 24555555555555555
Q ss_pred CCCCCCC-CCCCCCCCCeeeccCC--CcchhhhcCCCCccceEEEeccc
Q 003387 603 LPAHPGK-FCGSLENLNFISALHP--CCCTEDILGRLPNLRNLRIRGDL 648 (824)
Q Consensus 603 ~~~~~~p-~i~~L~~L~~l~~~~~--~~~~~~~l~~l~~L~~L~l~~~~ 648 (824)
+.. ..| .++.+++|+.|+++.+ .......+..+++|+.|+++++.
T Consensus 90 l~~-i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 90 LRC-IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCB-CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred cCE-eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 442 111 3444444444444311 11112225556666666666553
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.10 E-value=2.2e-10 Score=112.16 Aligned_cols=122 Identities=18% Similarity=0.243 Sum_probs=94.6
Q ss_pred cEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChh-hhhcCCCccEeecCCcccccc-chhhhccccCceecCCCc
Q 003387 524 RVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSS-LLSNLLNLYTLDMPFSYIDHT-ADEFWKMNKLRHLNFGSI 601 (824)
Q Consensus 524 r~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~ 601 (824)
++++++++.++.+|..+.. +|++|++++|.+..++.. +++++++|++|+|++|.+..+ |..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 7999999999999988765 999999999999999874 339999999999999999988 677999999999999999
Q ss_pred cCCCCCCC-CCCCCCCCCeeeccCCC--cchhhhcCCCCccceEEEeccc
Q 003387 602 TLPAHPGK-FCGSLENLNFISALHPC--CCTEDILGRLPNLRNLRIRGDL 648 (824)
Q Consensus 602 ~~~~~~~p-~i~~L~~L~~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~ 648 (824)
.+.. ..| .++.+++|+.|+++.+. ...+..+..+++|+.|+++++.
T Consensus 89 ~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 89 KIKE-ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCE-ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred cCCc-cCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 9874 223 46667777777666321 1222235566666666666553
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.10 E-value=2.6e-10 Score=109.99 Aligned_cols=101 Identities=24% Similarity=0.286 Sum_probs=50.7
Q ss_pred CcccEEEeeCccCccCCcc-CCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchh-hhccccCceecC
Q 003387 521 KLLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADE-FWKMNKLRHLNF 598 (824)
Q Consensus 521 ~~Lr~L~L~~~~i~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L 598 (824)
+.|++|++++|.++.+|.. ++.+++|++|++++|.+..+|...++.+++|++|++++|.+..+|.. +..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 3455555555555544432 34455555555555555555544335555555555555555555433 345555555555
Q ss_pred CCccCCCCCCC--CCCCCCCCCeeecc
Q 003387 599 GSITLPAHPGK--FCGSLENLNFISAL 623 (824)
Q Consensus 599 ~~~~~~~~~~p--~i~~L~~L~~l~~~ 623 (824)
++|.+. .+| .+..+++|+.|++.
T Consensus 108 ~~N~l~--~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 108 DTNQLK--SVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp CSSCCS--CCCTTTTTTCTTCCEEECC
T ss_pred cCCcce--EeCHHHhcCCcccCEEEec
Confidence 555544 222 23445555555554
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.09 E-value=2.7e-10 Score=111.54 Aligned_cols=102 Identities=18% Similarity=0.211 Sum_probs=68.1
Q ss_pred CcccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccch-hhhccccCceecCC
Q 003387 521 KLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTAD-EFWKMNKLRHLNFG 599 (824)
Q Consensus 521 ~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~ 599 (824)
+.|++|+|++|.++.+|..+..+++|++|+|++|.+..++...|.++++|++|+|++|.+..+|. .+..+++|++|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 45677777777777676666777777777777777776665544677777777777776666654 36667777777777
Q ss_pred CccCCCCCCC--CCCCCCCCCeeeccC
Q 003387 600 SITLPAHPGK--FCGSLENLNFISALH 624 (824)
Q Consensus 600 ~~~~~~~~~p--~i~~L~~L~~l~~~~ 624 (824)
+|.+. .+| .+..+++|+.|++..
T Consensus 111 ~N~l~--~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 111 GNDIS--VVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp SSCCC--BCCTTTTTTCTTCCEEECCS
T ss_pred CCCCC--eeChhhhhcCccccEEEeCC
Confidence 77665 233 466666777776663
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.01 E-value=1.8e-09 Score=104.07 Aligned_cols=124 Identities=23% Similarity=0.259 Sum_probs=99.0
Q ss_pred cccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchh-hhccccCceecCCC
Q 003387 522 LLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADE-FWKMNKLRHLNFGS 600 (824)
Q Consensus 522 ~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~ 600 (824)
..+.++++++.+..+|..+. .+|++|++++|.+..+|...++++++|++|++++|.+..+|.. +..+++|++|++++
T Consensus 8 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp ETTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 35789999999999997664 6999999999999999987668999999999999999999865 68999999999999
Q ss_pred ccCCCCCCC-CCCCCCCCCeeeccCC--CcchhhhcCCCCccceEEEeccc
Q 003387 601 ITLPAHPGK-FCGSLENLNFISALHP--CCCTEDILGRLPNLRNLRIRGDL 648 (824)
Q Consensus 601 ~~~~~~~~p-~i~~L~~L~~l~~~~~--~~~~~~~l~~l~~L~~L~l~~~~ 648 (824)
|.+.. ..+ .++.+++|+.|+++.+ .......+..+++|+.|+++++.
T Consensus 86 N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 86 NKLQS-LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp SCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccc-cCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 99873 223 5677888888887732 22233335667777778777764
No 142
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.98 E-value=3.3e-08 Score=108.18 Aligned_cols=266 Identities=14% Similarity=0.052 Sum_probs=158.1
Q ss_pred CCceechhhHHHHHHHHHc----CCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCC-ceeEEEECCCCCCCCHHHHHH
Q 003387 156 RDTVGLDDRMEELLDLLIE----GPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYF-DCHAWITEPYSNEYDADQILD 230 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F-~~~~wv~~~vs~~~~~~~~~~ 230 (824)
+.++||+.+++++.+++.. +....+.+.|+|+.|+||||||+.+.+ ...... ..++|+. .+...+...+..
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~i~--~~~~~~~~~~~~ 92 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVYIN--GFIYRNFTAIIG 92 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEEEE--TTTCCSHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHH--HHhhhcCeeEEEEe--CccCCCHHHHHH
Confidence 6799999999999999876 222234899999999999999999998 444332 3467777 788888889999
Q ss_pred HHHHHhCCCCCcccccccCHHHHHHHHHHhcC--CCeEEEEEecCCCh--hhHHHHHhhCCCCC----CCcEEEEEechH
Q 003387 231 IVIKFLMPSSRLSEIMDKNYEMKKIILHEYLM--TKRYLIVIDDVWSI--DMWDVIQEILPDNQ----NGSRVLITLTDI 302 (824)
Q Consensus 231 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~--~~~~~l~~~~~~~~----~gs~ilvTtR~~ 302 (824)
.++..++...+ ....+.......+.+.+. +++.+|||||++.. ..+..+...+.... .+..||+||+..
T Consensus 93 ~l~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 93 EIARSLNIPFP---RRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HHHHHTTCCCC---SSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred HHHHHhCccCC---CCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 99999865422 122345566666666663 57899999999764 44555555543321 367788888766
Q ss_pred HHHh--------hccc-c--cC----------------C--cCcCccccchhhHHHhc---------CCCchhHHHHHhH
Q 003387 303 RIII--------SFQF-E--DG----------------E--NMRLDLVPTGGPLRATY---------KGRPFLILYHGSI 344 (824)
Q Consensus 303 ~v~~--------~f~~-~--~~----------------~--~~~~~~~~~~~~i~~~c---------~GlPlai~~~~~~ 344 (824)
.... .|.. . .. . ....--.+....|++.+ +|.|-.+..+...
T Consensus 170 ~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~ 249 (389)
T 1fnn_A 170 AVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYR 249 (389)
T ss_dssp HHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHH
T ss_pred hHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHH
Confidence 4333 1110 0 00 0 00011123456677788 6776544443332
Q ss_pred HHh---hhhhhhccCC-----C-cc-cccc-c-c-cCCCCchHHHhHhccCC---CCceechhHHHHHHHH----cCCCC
Q 003387 345 SLE---ENIREAVETP-----L-GL-RYIK-C-L-MLPFCLKPCFIYLSVFP---AHQEISTRQLYQLWIA----EGFIP 404 (824)
Q Consensus 345 l~~---~~~~~~~~~~-----~-~~-~~~l-~-~-~L~~~lk~cfl~~s~fp---~~~~i~~~~Li~~W~a----~g~i~ 404 (824)
... ....+.+... . .+ ...+ . + .||.+.+.++..++.+. .+..+....+...+.. .|. .
T Consensus 250 a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~ 328 (389)
T 1fnn_A 250 SAYAAQQNGRKHIAPEDVRKSSKEVLFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGE-R 328 (389)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTC-C
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHhhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCC-C
Confidence 211 0000000000 0 00 0011 1 1 67777777766666543 2225666666665443 342 2
Q ss_pred CChHHHHHHHHHHHHhccccceeec
Q 003387 405 DNSEATAESYLEQLIKEGFVEAKKR 429 (824)
Q Consensus 405 ~~~e~~~~~~~~~Lv~rsllq~~~~ 429 (824)
+-.......++++|..++++.....
T Consensus 329 ~~~~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 329 PRVHSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp CCCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred CCCHHHHHHHHHHHHhCCCeEEeee
Confidence 2233457789999999999998654
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.95 E-value=1.6e-09 Score=103.93 Aligned_cols=83 Identities=19% Similarity=0.260 Sum_probs=38.1
Q ss_pred CcccEEEeeCccCccC-CccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchh-hhccccCceecC
Q 003387 521 KLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADE-FWKMNKLRHLNF 598 (824)
Q Consensus 521 ~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L 598 (824)
+.|++|+|++|.++.+ |..++++++|++|+|++|.+..+|..+|.++++|++|+|++|.+..+|.. +..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 3444444444444433 23344444444444444444444444334444444444444444444433 444444444444
Q ss_pred CCccC
Q 003387 599 GSITL 603 (824)
Q Consensus 599 ~~~~~ 603 (824)
++|.+
T Consensus 113 ~~N~~ 117 (174)
T 2r9u_A 113 YNNPW 117 (174)
T ss_dssp CSSCB
T ss_pred CCCCc
Confidence 44443
No 144
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.93 E-value=3.1e-09 Score=114.86 Aligned_cols=265 Identities=12% Similarity=0.080 Sum_probs=148.1
Q ss_pred CCCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCC-----CCHHHH
Q 003387 154 KSRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNE-----YDADQI 228 (824)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~-----~~~~~~ 228 (824)
....++||+.+++.|.+ +.. +++.|+|++|+|||||++.+.+ +... ..+|+. .... .+....
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~--~~~~---~~~~~~--~~~~~~~~~~~~~~~ 77 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGIN--ELNL---PYIYLD--LRKFEERNYISYKDF 77 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHH--HHTC---CEEEEE--GGGGTTCSCCCHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHH--hcCC---CEEEEE--chhhccccCCCHHHH
Confidence 45789999999999999 643 5999999999999999999998 3332 257887 5532 344555
Q ss_pred HHHHHHHhC--------------CCCCc--c----cc-----cccCHHHHHHHHHHhcCCCeEEEEEecCCChh-----h
Q 003387 229 LDIVIKFLM--------------PSSRL--S----EI-----MDKNYEMKKIILHEYLMTKRYLIVIDDVWSID-----M 278 (824)
Q Consensus 229 ~~~i~~~l~--------------~~~~~--~----~~-----~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~-----~ 278 (824)
...+.+.+. .-.+. + .. .......+...+.+.-+ ++++||+||++..+ +
T Consensus 78 ~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~ 156 (357)
T 2fna_A 78 LLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVN 156 (357)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCC
T ss_pred HHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchh
Confidence 555444331 00000 0 00 12234555555555433 59999999997532 2
Q ss_pred HHHHHhhCCCCCCCcEEEEEechHHHHh-----------hcccccC----Cc----------------CcCccccchhhH
Q 003387 279 WDVIQEILPDNQNGSRVLITLTDIRIII-----------SFQFEDG----EN----------------MRLDLVPTGGPL 327 (824)
Q Consensus 279 ~~~l~~~~~~~~~gs~ilvTtR~~~v~~-----------~f~~~~~----~~----------------~~~~~~~~~~~i 327 (824)
|..+...+.+...+.++|+|+|...... .++.... .. ......+ ...|
T Consensus 157 ~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~-~~~i 235 (357)
T 2fna_A 157 LLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD-YEVV 235 (357)
T ss_dssp CHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC-HHHH
T ss_pred HHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc-HHHH
Confidence 3222222222224678999999764311 1111000 00 0001111 2678
Q ss_pred HHhcCCCchhHHHHHhHHHhhhhhhh----c-cCC---C--ccccccc--ccCCCCchHHHhHhccCCCCceechhHHHH
Q 003387 328 RATYKGRPFLILYHGSISLEENIREA----V-ETP---L--GLRYIKC--LMLPFCLKPCFIYLSVFPAHQEISTRQLYQ 395 (824)
Q Consensus 328 ~~~c~GlPlai~~~~~~l~~~~~~~~----~-~~~---~--~~~~~l~--~~L~~~lk~cfl~~s~fp~~~~i~~~~Li~ 395 (824)
+..|+|.|+++..++..+......+. + +.. . .+...+. ..+|+..+..+..+|. +. +...+..
T Consensus 236 ~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~---g~--~~~~l~~ 310 (357)
T 2fna_A 236 YEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFLHGREIARKRYLNIMRTLSK---CG--KWSDVKR 310 (357)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT---CB--CHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc---CC--CHHHHHH
Confidence 99999999999998876521110011 0 000 0 1111110 1467788888888887 22 4445443
Q ss_pred HHH-HcCCCCCChHHHHHHHHHHHHhccccceeecCCCCcEEEEE-cCccHHHH
Q 003387 396 LWI-AEGFIPDNSEATAESYLEQLIKEGFVEAKKRKAGGTINTCS-IPGRWRPV 447 (824)
Q Consensus 396 ~W~-a~g~i~~~~e~~~~~~~~~Lv~rsllq~~~~~~~g~~~~~~-mHdlv~dl 447 (824)
..- ..|. +........+++.|++.+++.... + .|+ .|.++++.
T Consensus 311 ~~~~~~g~--~~~~~~~~~~L~~L~~~gli~~~~----~---~y~f~~~~~~~~ 355 (357)
T 2fna_A 311 ALELEEGI--EISDSEIYNYLTQLTKHSWIIKEG----E---KYCPSEPLISLA 355 (357)
T ss_dssp HHHHHHCS--CCCHHHHHHHHHHHHHTTSEEESS----S---CEEESSHHHHHH
T ss_pred HHHHhcCC--CCCHHHHHHHHHHHHhCCCEEecC----C---EEEecCHHHHHh
Confidence 221 1231 012345678999999999997653 2 244 46676654
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.92 E-value=2.9e-09 Score=102.19 Aligned_cols=97 Identities=21% Similarity=0.253 Sum_probs=80.5
Q ss_pred ccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchh-hhccccCceecCCCc
Q 003387 523 LRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADE-FWKMNKLRHLNFGSI 601 (824)
Q Consensus 523 Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~ 601 (824)
-++++++++.+..+|..+. .+|++|+|++|.+..+++..|+++++|++|+|++|.+..+|.. +.++++|++|+|++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 3789999999999999876 7999999999999999765559999999999999999999876 589999999999999
Q ss_pred cCCCCCCC--CCCCCCCCCeeecc
Q 003387 602 TLPAHPGK--FCGSLENLNFISAL 623 (824)
Q Consensus 602 ~~~~~~~p--~i~~L~~L~~l~~~ 623 (824)
.+. .+| .++.+++|+.|++.
T Consensus 92 ~l~--~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 92 HLK--SIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp CCC--CCCTTTTTTCTTCSEEECC
T ss_pred ccc--eeCHHHhccccCCCEEEeC
Confidence 887 333 24445555554444
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.92 E-value=3e-09 Score=101.72 Aligned_cols=80 Identities=21% Similarity=0.258 Sum_probs=62.9
Q ss_pred ccEEEeeCccCccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchh-hhccccCceecCCCc
Q 003387 523 LRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADE-FWKMNKLRHLNFGSI 601 (824)
Q Consensus 523 Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~ 601 (824)
.++|+++++.++.+|..+. .+|++|+|++|.+..+++..|.++++|++|+|++|.+..+|.. +..+++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 5778888888888887664 6888888888888887555448888888888888888888765 578888888888888
Q ss_pred cCC
Q 003387 602 TLP 604 (824)
Q Consensus 602 ~~~ 604 (824)
.+.
T Consensus 89 ~l~ 91 (170)
T 3g39_A 89 QLK 91 (170)
T ss_dssp CCC
T ss_pred ccC
Confidence 775
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.92 E-value=2.6e-09 Score=102.14 Aligned_cols=84 Identities=20% Similarity=0.244 Sum_probs=75.8
Q ss_pred CcccEEEeeCccCccC-CccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchh-hhccccCceecC
Q 003387 521 KLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADE-FWKMNKLRHLNF 598 (824)
Q Consensus 521 ~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L 598 (824)
+.|++|+|++|.++.+ |..+..+++|++|+|++|.+..+|...|.++++|++|+|++|.+..+|.. +..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 7899999999999977 56789999999999999999999988778999999999999999999875 889999999999
Q ss_pred CCccCC
Q 003387 599 GSITLP 604 (824)
Q Consensus 599 ~~~~~~ 604 (824)
++|.+.
T Consensus 110 ~~N~~~ 115 (170)
T 3g39_A 110 LNNPWD 115 (170)
T ss_dssp CSSCBC
T ss_pred CCCCCC
Confidence 999775
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.91 E-value=2.5e-08 Score=109.07 Aligned_cols=268 Identities=10% Similarity=0.037 Sum_probs=165.1
Q ss_pred CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCcc-CCCCCcceEEeecCCCCCccChhhhhcCCCc
Q 003387 492 DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSLNSLPSSLLSNLLNL 570 (824)
Q Consensus 492 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L 570 (824)
+..+.++.+...-. .+....|..+ +|+.+.+..+ ++.++.. |.+ .+|+.+.+.. .+..++...|.+|.+|
T Consensus 112 ~~~l~~i~ip~~i~-----~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L 182 (401)
T 4fdw_A 112 LKGYNEIILPNSVK-----SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNL 182 (401)
T ss_dssp CSSCSEEECCTTCC-----EECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTC
T ss_pred cCCccEEEECCccC-----EehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccC
Confidence 45555555544322 2344566665 6888888765 6655543 444 4688888875 6777777666888888
Q ss_pred cEeecCCccccccchhhhccccCceecCCCccCCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEeccccc
Q 003387 571 YTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKFCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDLSY 650 (824)
Q Consensus 571 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 650 (824)
+.+++.++.+..+|.....+.+|+.+.+..+ +. .++ ...+..|++|+.+.+..+-..
T Consensus 183 ~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~--~I~--------------------~~aF~~~~~L~~l~l~~~l~~ 239 (401)
T 4fdw_A 183 KKADLSKTKITKLPASTFVYAGIEEVLLPVT-LK--EIG--------------------SQAFLKTSQLKTIEIPENVST 239 (401)
T ss_dssp CEEECTTSCCSEECTTTTTTCCCSEEECCTT-CC--EEC--------------------TTTTTTCTTCCCEECCTTCCE
T ss_pred CeeecCCCcceEechhhEeecccCEEEeCCc-hh--eeh--------------------hhHhhCCCCCCEEecCCCccC
Confidence 8888888888888776545678888866533 21 111 112445555555555432100
Q ss_pred chhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCccCcCCCceEEEEEcccCC-----CCCcccccCCCCCCeEEeecc
Q 003387 651 NQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYLFPHSLTHLSFSNTDLM-----DDPMPTLEKLPLLQVLKLKQN 725 (824)
Q Consensus 651 ~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~-----~~~~~~l~~l~~L~~L~L~~~ 725 (824)
.. ...+.+ .+|+.+.+.. +++.+.-..+..|++|+.+.+.++.+. ......|.+|++|+.+.|. +
T Consensus 240 I~---~~aF~~-~~L~~i~lp~-----~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~ 309 (401)
T 4fdw_A 240 IG---QEAFRE-SGITTVKLPN-----GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-E 309 (401)
T ss_dssp EC---TTTTTT-CCCSEEEEET-----TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-T
T ss_pred cc---cccccc-CCccEEEeCC-----CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-C
Confidence 00 112223 5777777753 366665556677888888888877643 1334568889999999998 3
Q ss_pred ccCCCeeeecCCCCCCccEEeeccCCCCcccee-ccCcccCccEEEEecCCCCCCCccccccCc-cCcEEEecCCcHHHH
Q 003387 726 SYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTM-GNAAMPKLECLIINPCAYLKKMPEQLWYIK-SLNKFDCWWPQPELR 803 (824)
Q Consensus 726 ~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~-~~~~lp~L~~L~l~~c~~l~~lp~~l~~l~-~L~~L~l~~c~~~l~ 803 (824)
.+.. .-...+.++++|+.+.|.++ +..+.. .+..+ +|+.|.+.++....-.+..+..++ +++.|.+-.. ..
T Consensus 310 ~i~~-I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~---~~ 382 (401)
T 4fdw_A 310 SIRI-LGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE---SV 382 (401)
T ss_dssp TCCE-ECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG---GH
T ss_pred ceEE-EhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH---HH
Confidence 3321 11223456789999999653 566643 35566 999999998854322233455664 7888886543 45
Q ss_pred HHHhh
Q 003387 804 QKLRE 808 (824)
Q Consensus 804 ~~~~~ 808 (824)
+.++.
T Consensus 383 ~~y~~ 387 (401)
T 4fdw_A 383 EKYKN 387 (401)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 55554
No 149
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.91 E-value=2.9e-08 Score=108.52 Aligned_cols=265 Identities=13% Similarity=0.044 Sum_probs=150.7
Q ss_pred CCCceechhhHHHHHHHHHcC--CCCeEEEEEEcCCCChHHHHHHHHhCCccccCC------CceeEEEECCCCCCCCHH
Q 003387 155 SRDTVGLDDRMEELLDLLIEG--PPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHY------FDCHAWITEPYSNEYDAD 226 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~------F~~~~wv~~~vs~~~~~~ 226 (824)
++.++||+.+++++.+++... ......+.|+|++|+||||+|+.+++ ..... -...+|+. .....+..
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~--~~~~~~~~~~~~~~~~~i~--~~~~~~~~ 93 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLR--RLEARASSLGVLVKPIYVN--ARHRETPY 93 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHH--HHHHHHHHHTCCEEEEEEE--TTTSCSHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHHhccCCCeEEEEEE--CCcCCCHH
Confidence 378999999999999998542 33467889999999999999999998 44221 12466787 88888899
Q ss_pred HHHHHHHHHhCCCCCcccccccCHHHHHHHHHHhcC--CCeEEEEEecCCChhh----HHHHH---hhCCCC--CCCcEE
Q 003387 227 QILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLM--TKRYLIVIDDVWSIDM----WDVIQ---EILPDN--QNGSRV 295 (824)
Q Consensus 227 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~~----~~~l~---~~~~~~--~~gs~i 295 (824)
.++..++.+++...+ ....+.......+.+.+. +++.+|||||++.... .+.+. ...... ..+..+
T Consensus 94 ~~~~~l~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 170 (387)
T 2v1u_A 94 RVASAIAEAVGVRVP---FTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSL 170 (387)
T ss_dssp HHHHHHHHHHSCCCC---SSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEE
T ss_pred HHHHHHHHHhCCCCC---CCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEE
Confidence 999999999976432 223345666677777773 4689999999986532 22222 211111 345677
Q ss_pred EEEechHHH--------Hhhccc-cc--C----------------C--cCcCccccchhhHHHhcC---CCchhH-HHHH
Q 003387 296 LITLTDIRI--------IISFQF-ED--G----------------E--NMRLDLVPTGGPLRATYK---GRPFLI-LYHG 342 (824)
Q Consensus 296 lvTtR~~~v--------~~~f~~-~~--~----------------~--~~~~~~~~~~~~i~~~c~---GlPlai-~~~~ 342 (824)
|.||+.... ...|.. .. . . ....--.+....+++.++ |.|-.+ ..+.
T Consensus 171 I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~ 250 (387)
T 2v1u_A 171 VGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLR 250 (387)
T ss_dssp EEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred EEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 888876522 111111 00 0 0 000111234456677777 888433 3332
Q ss_pred hHHHhhhh-h-hhccCCCcccccc---------c-c-cCCCCchHHHhHhc-cCCCCceechhHHHHH----HHHcCCCC
Q 003387 343 SISLEENI-R-EAVETPLGLRYIK---------C-L-MLPFCLKPCFIYLS-VFPAHQEISTRQLYQL----WIAEGFIP 404 (824)
Q Consensus 343 ~~l~~~~~-~-~~~~~~~~~~~~l---------~-~-~L~~~lk~cfl~~s-~fp~~~~i~~~~Li~~----W~a~g~i~ 404 (824)
........ . ..+... .+..++ . + .+|.+.+..++..+ ++-....+...++.+. .-..| +.
T Consensus 251 ~a~~~a~~~~~~~i~~~-~v~~a~~~~~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 328 (387)
T 2v1u_A 251 VAGEIAERRREERVRRE-HVYSARAEIERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG-LE 328 (387)
T ss_dssp HHHHHHHHTTCSCBCHH-HHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT-CC
T ss_pred HHHHHHHHcCCCCcCHH-HHHHHHHHHhhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC-CC
Confidence 22210000 0 000000 111111 0 1 66666665555454 4432234555533332 22344 33
Q ss_pred CChHHHHHHHHHHHHhccccceee
Q 003387 405 DNSEATAESYLEQLIKEGFVEAKK 428 (824)
Q Consensus 405 ~~~e~~~~~~~~~Lv~rsllq~~~ 428 (824)
+........+++.|...++++...
T Consensus 329 ~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 329 HVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCeEEEe
Confidence 344566889999999999999864
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.89 E-value=5.3e-09 Score=111.78 Aligned_cols=262 Identities=13% Similarity=0.001 Sum_probs=160.4
Q ss_pred CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCccCCC--------CCcceEEeecCCCCCccChhh
Q 003387 492 DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPSGIEN--------LFLLRYLKLNIPSLNSLPSSL 563 (824)
Q Consensus 492 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~--------l~~Lr~L~L~~~~i~~lp~~i 563 (824)
.++|++|.+.++.... .... ...++.++.+.+..+.+. +..|.. +.+|+.|.|.. .++.++...
T Consensus 48 l~~L~~LdLs~n~i~~--~~~~---~~~~~~~~~~~~~~~~I~--~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~a 119 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKM--YSGK---AGTYPNGKFYIYMANFVP--AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAA 119 (329)
T ss_dssp CTTCCEEEEEEEEECC--EEES---SSSSGGGCCEEECTTEEC--TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTT
T ss_pred hccCeEEecCcceeEE--ecCc---cccccccccccccccccC--HHHhcccccccccccCCCcEEECCc-cccchhHHH
Confidence 5678888887766531 0001 112222455555555332 123445 78888888887 788887776
Q ss_pred hhcCCCccEeecCCccccccchh-hhccccCceecCCCccCC--CCCCC--CCCCCCCCC-eeeccCCCcchhhh---cC
Q 003387 564 LSNLLNLYTLDMPFSYIDHTADE-FWKMNKLRHLNFGSITLP--AHPGK--FCGSLENLN-FISALHPCCCTEDI---LG 634 (824)
Q Consensus 564 ~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~~--~~~~p--~i~~L~~L~-~l~~~~~~~~~~~~---l~ 634 (824)
|.+|++|+.|+++++.+..++.. |..+.++..+.+...... ...+. .+.++..|+ .+.+.......... --
T Consensus 120 F~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~ 199 (329)
T 3sb4_A 120 FKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGL 199 (329)
T ss_dssp TTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTC
T ss_pred hhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhccc
Confidence 68888888888888877777544 666777777755442210 00111 233344444 23333212211111 12
Q ss_pred CCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCccCcCCCceEEEEEcccCCCCCcccccCC
Q 003387 635 RLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKL 714 (824)
Q Consensus 635 ~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l 714 (824)
...++..+.+.+.. ...........+++|++|++..| +++.+.-..+..+++|+.|+|.++ +.......|.+|
T Consensus 200 ~~~~~~~l~~~~~l--~~~~~~~l~~~~~~L~~l~L~~n----~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~ 272 (329)
T 3sb4_A 200 QPRDINFLTIEGKL--DNADFKLIRDYMPNLVSLDISKT----NATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNC 272 (329)
T ss_dssp CGGGCSEEEEEECC--CHHHHHHHHHHCTTCCEEECTTB----CCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred CccccceEEEeeee--cHHHHHHHHHhcCCCeEEECCCC----CcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCC
Confidence 35677888887763 22333333334889999999764 477776666788899999999887 555556678999
Q ss_pred CCCC-eEEeeccccCCCeeeecCCCCCCccEEeeccCCCCcccee-ccCcccCccEEEE
Q 003387 715 PLLQ-VLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTM-GNAAMPKLECLII 771 (824)
Q Consensus 715 ~~L~-~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~-~~~~lp~L~~L~l 771 (824)
++|+ .+.+.+ .+.. .-...+.++++|+.|.+.++. +..++. .+..+++|+.|+.
T Consensus 273 ~~L~~~l~l~~-~l~~-I~~~aF~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 273 GRLAGTLELPA-SVTA-IEFGAFMGCDNLRYVLATGDK-ITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTCCEEEEECT-TCCE-ECTTTTTTCTTEEEEEECSSC-CCEECTTTTCTTCCCCEEEC
T ss_pred hhccEEEEEcc-cceE-EchhhhhCCccCCEEEeCCCc-cCccchhhhcCCcchhhhcc
Confidence 9999 999985 3321 112345678999999997654 666654 4667888888763
No 151
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.88 E-value=8.9e-11 Score=115.58 Aligned_cols=112 Identities=21% Similarity=0.235 Sum_probs=81.6
Q ss_pred CccCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCceecCCCccCCCCCCCCCC
Q 003387 533 LIQYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKFCG 612 (824)
Q Consensus 533 i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~~~p~i~ 612 (824)
++.+|..++.+++|++|++++|.+..+| .+ .++++|++|++++|.+..+|..+..+++|++|++++|.+..
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~-~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~------- 107 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEKIS-SL-SGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS------- 107 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESCCC-CH-HHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-------
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCcccc-cc-ccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-------
Confidence 3445557888888999999888888888 66 88888999999888888888878888888888888887641
Q ss_pred CCCCCCeeeccCCCcchhhhcCCCCccceEEEecccccchhhHH--HHhccCCCCCeEEEecc
Q 003387 613 SLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDLSYNQSLLS--KSLCRLSCLESLKLANE 673 (824)
Q Consensus 613 ~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~--~~l~~l~~L~~L~l~~~ 673 (824)
++. +..+++|+.|+++++. ...++ ..+..+++|++|++++|
T Consensus 108 ----------------l~~-~~~l~~L~~L~l~~N~---i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 108 ----------------LSG-IEKLVNLRVLYMSNNK---ITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp ----------------HHH-HHHHHHSSEEEESEEE---CCCHHHHHHHTTTTTCSEEEECSC
T ss_pred ----------------CCc-cccCCCCCEEECCCCc---CCchhHHHHHhcCCCCCEEEecCC
Confidence 223 6677888888888774 22222 35556666666666543
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.80 E-value=1e-07 Score=104.29 Aligned_cols=240 Identities=12% Similarity=0.132 Sum_probs=156.6
Q ss_pred hcccCcccEEEeeCccCccCCc-cCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccch-hhhccccCc
Q 003387 517 CGMFKLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTAD-EFWKMNKLR 594 (824)
Q Consensus 517 ~~~~~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~ 594 (824)
+..+..++.+.+.+. ++.++. .+.++ +|+.+.+..+ ++.++...|.++ +|+.+.+.. .+..++. .|.+|++|+
T Consensus 109 ~~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 109 TEILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp EEECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred EEecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCC
Confidence 334456666666543 444443 34443 6888887665 777777665664 688888875 5666653 477888888
Q ss_pred eecCCCccCCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccC
Q 003387 595 HLNFGSITLPAHPGKFCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANES 674 (824)
Q Consensus 595 ~L~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~ 674 (824)
.++++.|.+. .++ ...+. +.+|+.+.+...- ...-...+.++++|+.+.+..
T Consensus 184 ~l~l~~n~l~--~I~--------------------~~aF~-~~~L~~l~lp~~l---~~I~~~aF~~~~~L~~l~l~~-- 235 (401)
T 4fdw_A 184 KADLSKTKIT--KLP--------------------ASTFV-YAGIEEVLLPVTL---KEIGSQAFLKTSQLKTIEIPE-- 235 (401)
T ss_dssp EEECTTSCCS--EEC--------------------TTTTT-TCCCSEEECCTTC---CEECTTTTTTCTTCCCEECCT--
T ss_pred eeecCCCcce--Eec--------------------hhhEe-ecccCEEEeCCch---heehhhHhhCCCCCCEEecCC--
Confidence 8888776554 122 11122 3566666665331 111123567889999999864
Q ss_pred CCCCccEEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCC----eeeecCCCCCCccEEeeccC
Q 003387 675 KMPRLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGR----KLTCGSYGFPNLKVLHLKSM 750 (824)
Q Consensus 675 ~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~----~~~~~~~~~~~L~~L~L~~~ 750 (824)
+++.+.-..+.. .+|+.+.|.++ +.......|.+|++|+.+.+.++..... .....+.++++|+.+.|.+
T Consensus 236 ---~l~~I~~~aF~~-~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~- 309 (401)
T 4fdw_A 236 ---NVSTIGQEAFRE-SGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE- 309 (401)
T ss_dssp ---TCCEECTTTTTT-CCCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-
T ss_pred ---CccCcccccccc-CCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-
Confidence 366665444445 68999999554 4444466789999999999987655311 1122356788999999984
Q ss_pred CCCcccee-ccCcccCccEEEEecCCCCCCCc-cccccCccCcEEEecCCc
Q 003387 751 LWLEEWTM-GNAAMPKLECLIINPCAYLKKMP-EQLWYIKSLNKFDCWWPQ 799 (824)
Q Consensus 751 ~~l~~l~~-~~~~lp~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~ 799 (824)
.+..++. .+..+++|+.+.|..+ ++.++ ..+.++ +|+.|.+.++.
T Consensus 310 -~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 310 -SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp -TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSS
T ss_pred -ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 3666653 4556899999999654 55654 357788 99999998764
No 153
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.77 E-value=1.2e-08 Score=111.57 Aligned_cols=140 Identities=14% Similarity=0.064 Sum_probs=97.8
Q ss_pred CCceechhhHHHHHHHHHc--CCCCeEEEEEEcCCCChHHHHHHHHhCCccccCC--------CceeEEEECCCCCCC-C
Q 003387 156 RDTVGLDDRMEELLDLLIE--GPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHY--------FDCHAWITEPYSNEY-D 224 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~--------F~~~~wv~~~vs~~~-~ 224 (824)
+.++||+.+++++.+++.. .....+.+.|+|++|+||||+|+.+++ +.... ....+|+. .+... +
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~i~--~~~~~~~ 95 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFN--EIEEVKKEDEEYKDVKQAYVN--CREVGGT 95 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHH--HHHHHHHHSSSSTTCEEEEEE--HHHHCSC
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHhhhhcCCCCceEEEEE--CccCCCC
Confidence 6899999999999988865 233466899999999999999999998 33221 23466777 66666 7
Q ss_pred HHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHhcCCCeEEEEEecCCChhh---HHH-HHhhCCCCCCCcEEEEEec
Q 003387 225 ADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWSIDM---WDV-IQEILPDNQNGSRVLITLT 300 (824)
Q Consensus 225 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~---~~~-l~~~~~~~~~gs~ilvTtR 300 (824)
...++.+++.++.+... + ....+.......+.+.++.++.+|||||++.... .+. +...+... .+..+|+||+
T Consensus 96 ~~~~~~~l~~~l~~~~~-~-~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~ 172 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSV-P-KHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISN 172 (384)
T ss_dssp HHHHHHHHHHHHHCSCC-C-SSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECS
T ss_pred HHHHHHHHHHHhcCCCC-C-CCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEEC
Confidence 88889999988843211 0 1223346667788888887766999999976532 222 22222222 6788999998
Q ss_pred hH
Q 003387 301 DI 302 (824)
Q Consensus 301 ~~ 302 (824)
..
T Consensus 173 ~~ 174 (384)
T 2qby_B 173 DI 174 (384)
T ss_dssp ST
T ss_pred CC
Confidence 65
No 154
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.68 E-value=7.5e-08 Score=97.60 Aligned_cols=180 Identities=14% Similarity=0.029 Sum_probs=95.9
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHH
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIK 234 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~ 234 (824)
..+++|++..++.+.+++..+. ....+.|+|++|+||||+|+.+++ +....+....+. .... .. ...+..
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~--~~~~~~~~~~~~---~~~~---~~-~~~~~~ 91 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAK--GLNCETGITATP---CGVC---DN-CREIEQ 91 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHH--HHHCTTCSCSSC---CSCS---HH-HHHHHT
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH--HhcCCCCCCCCC---Cccc---HH-HHHHhc
Confidence 3569999999999999997654 234889999999999999999987 333222110000 0000 00 001110
Q ss_pred HhCCCC-CcccccccCHHHHHHHHHHhc-----CCCeEEEEEecCCC--hhhHHHHHhhCCCCCCCcEEEEEechHHHHh
Q 003387 235 FLMPSS-RLSEIMDKNYEMKKIILHEYL-----MTKRYLIVIDDVWS--IDMWDVIQEILPDNQNGSRVLITLTDIRIII 306 (824)
Q Consensus 235 ~l~~~~-~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~ 306 (824)
...... ..........+.. ..+.+.+ .+++.+||+||++. ...++.+...+.....+.++|+||+......
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 92 GRFVDLIEIDAASRTKVEDT-RDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp TCCSSEEEEETTCGGGHHHH-HHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred cCCcceEEecCcccccHHHH-HHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 000000 0000000111222 2222322 35689999999965 4567777666655556788999987643211
Q ss_pred -h---------------------cccccCCcCcCccccchhhHHHhcCCCchhHHHHHhHH
Q 003387 307 -S---------------------FQFEDGENMRLDLVPTGGPLRATYKGRPFLILYHGSIS 345 (824)
Q Consensus 307 -~---------------------f~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l 345 (824)
. +..........--.+....|++.|+|.|..+..+...+
T Consensus 171 ~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 171 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 00000000001112345678888889888877655433
No 155
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.65 E-value=1.4e-08 Score=111.09 Aligned_cols=142 Identities=14% Similarity=0.137 Sum_probs=95.6
Q ss_pred CCCceechhhHHHHHHHHHcC--CCCeEEEEEEcCCCChHHHHHHHHhCCccccCCC---ceeEEEECCCCCCCCHHHHH
Q 003387 155 SRDTVGLDDRMEELLDLLIEG--PPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYF---DCHAWITEPYSNEYDADQIL 229 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F---~~~~wv~~~vs~~~~~~~~~ 229 (824)
++.++||+.+++.+.+++... ......+.|+|++|+||||||+.+++ .....| ...+|+. .+...+...++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~--~~~~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYIN--TRQIDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEE--HHHHCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEE--CCCCCCHHHHH
Confidence 478999999999999998752 33467899999999999999999998 444332 2466776 66666777888
Q ss_pred HHHHHHhCCCCCcccccccCHHHHHHHHHHhcC--CCeEEEEEecCCCh------hhHHHHHhhCCC-CCCCcEEEEEec
Q 003387 230 DIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLM--TKRYLIVIDDVWSI------DMWDVIQEILPD-NQNGSRVLITLT 300 (824)
Q Consensus 230 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~------~~~~~l~~~~~~-~~~gs~ilvTtR 300 (824)
..++.+++...+ ....+..+....+.+.+. +++.+||+|+++.. ..+..+...+.. ...+..+|+||+
T Consensus 95 ~~i~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~ 171 (386)
T 2qby_A 95 ADLLESLDVKVP---FTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITN 171 (386)
T ss_dssp HHHTTTTSCCCC---SSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEES
T ss_pred HHHHHHhCCCCC---CCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEEC
Confidence 888887755322 122334555666666664 45899999999753 233344332211 233556788887
Q ss_pred hHH
Q 003387 301 DIR 303 (824)
Q Consensus 301 ~~~ 303 (824)
...
T Consensus 172 ~~~ 174 (386)
T 2qby_A 172 DVK 174 (386)
T ss_dssp CGG
T ss_pred CCC
Confidence 654
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.59 E-value=6.9e-07 Score=97.80 Aligned_cols=278 Identities=13% Similarity=0.040 Sum_probs=133.4
Q ss_pred CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCc-cCCCCCcceEEeecCC----------------
Q 003387 492 DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIP---------------- 554 (824)
Q Consensus 492 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~---------------- 554 (824)
|.+|+++.+...- ..+....|..|++|+.++|..+ ++.++. .+..+..|+.+.+..+
T Consensus 70 c~~L~~i~lp~~i-----~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 70 CRKVTEIKIPSTV-----REIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKE 143 (394)
T ss_dssp CTTEEEEECCTTC-----CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSE
T ss_pred CCCceEEEeCCCc-----cCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccc
Confidence 6677777764321 2244566777777777777544 443332 2444555554443321
Q ss_pred -----CCCccChhhhhcCCCccEeecCCccccccch-hhhccccCceecCCCccCCCCCCC--CCCCCCCCCeeeccCCC
Q 003387 555 -----SLNSLPSSLLSNLLNLYTLDMPFSYIDHTAD-EFWKMNKLRHLNFGSITLPAHPGK--FCGSLENLNFISALHPC 626 (824)
Q Consensus 555 -----~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~~~p--~i~~L~~L~~l~~~~~~ 626 (824)
.+..+....|.++.+|+.+.+.++ +..++. .+..+.+|+.+++..+ +. .++ .+.++..|+.+.+....
T Consensus 144 ~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~--~I~~~~F~~~~~L~~i~~~~~~ 219 (394)
T 4fs7_A 144 ITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LK--IIRDYCFAECILLENMEFPNSL 219 (394)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CC--EECTTTTTTCTTCCBCCCCTTC
T ss_pred cccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ce--EeCchhhccccccceeecCCCc
Confidence 112223333466677777776543 334433 3566677777765443 11 122 44555556555554333
Q ss_pred cchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCccCcCCCceEEEEEcccCCCC
Q 003387 627 CCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYLFPHSLTHLSFSNTDLMDD 706 (824)
Q Consensus 627 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~ 706 (824)
...........+|+.+.+....... -...+..+..|+.+.+..+ +..+.-..+..++.++.+......+.
T Consensus 220 ~~i~~~~~~~~~l~~i~ip~~~~~i---~~~~f~~~~~l~~~~~~~~-----~~~i~~~~F~~~~~l~~~~~~~~~i~-- 289 (394)
T 4fs7_A 220 YYLGDFALSKTGVKNIIIPDSFTEL---GKSVFYGCTDLESISIQNN-----KLRIGGSLFYNCSGLKKVIYGSVIVP-- 289 (394)
T ss_dssp CEECTTTTTTCCCCEEEECTTCCEE---CSSTTTTCSSCCEEEECCT-----TCEECSCTTTTCTTCCEEEECSSEEC--
T ss_pred eEeehhhcccCCCceEEECCCceec---ccccccccccceeEEcCCC-----cceeeccccccccccceeccCceeec--
Confidence 2222223344566666654332100 0123445666666666542 22232222344455555554433221
Q ss_pred CcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCccce-eccCcccCccEEEEecCCCCCCCcc-cc
Q 003387 707 PMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWT-MGNAAMPKLECLIINPCAYLKKMPE-QL 784 (824)
Q Consensus 707 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~lp~L~~L~l~~c~~l~~lp~-~l 784 (824)
-..+..+.+|+.+.+..+ +.. .-...+.++.+|+.+.|.+ .++.+. ..+..+.+|+.+.+..+ ++.++. .+
T Consensus 290 -~~~F~~~~~L~~i~l~~~-i~~-I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF 362 (394)
T 4fs7_A 290 -EKTFYGCSSLTEVKLLDS-VKF-IGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAF 362 (394)
T ss_dssp -TTTTTTCTTCCEEEECTT-CCE-ECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTB
T ss_pred -cccccccccccccccccc-cce-echhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHh
Confidence 123455666666666522 110 0011234456666666643 244443 22344566666666433 444432 45
Q ss_pred ccCccCcEEEec
Q 003387 785 WYIKSLNKFDCW 796 (824)
Q Consensus 785 ~~l~~L~~L~l~ 796 (824)
.+|++|+.+.+.
T Consensus 363 ~~C~~L~~i~lp 374 (394)
T 4fs7_A 363 QGCINLKKVELP 374 (394)
T ss_dssp TTCTTCCEEEEE
T ss_pred hCCCCCCEEEEC
Confidence 666666666664
No 157
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.59 E-value=6.5e-08 Score=96.59 Aligned_cols=124 Identities=14% Similarity=0.123 Sum_probs=78.5
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCC-Cc-eeEEEECCCCCCCCHHHHHHHH
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHY-FD-CHAWITEPYSNEYDADQILDIV 232 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~-F~-~~~wv~~~vs~~~~~~~~~~~i 232 (824)
..+++|++..++.+.+++.... ...+.|+|++|+||||+|+.+++ +.... +. ..+.+. .+.......+...+
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 89 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALAR--DLFGENWRDNFIEMN--ASDERGIDVVRHKI 89 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHH--HHHGGGGGGGEEEEE--TTCTTCHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHH--HHhccccccceEEec--cccccChHHHHHHH
Confidence 3568999999999999998764 33489999999999999999988 43222 22 234444 44433333322222
Q ss_pred HHHhCCCCCcccccccCHHHHHHHHHHhcCCCeEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEechHH
Q 003387 233 IKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWSI--DMWDVIQEILPDNQNGSRVLITLTDIR 303 (824)
Q Consensus 233 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR~~~ 303 (824)
........ .-.+++.+||+||++.. ..++.+...+.....+.++|+||+...
T Consensus 90 ~~~~~~~~-------------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 90 KEFARTAP-------------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp HHHHTSCC-------------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred HHHhcccC-------------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 21111100 01257899999999764 345555555444455788999987653
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.57 E-value=6e-08 Score=104.38 Aligned_cols=88 Identities=16% Similarity=0.087 Sum_probs=58.2
Q ss_pred hcccCcccEEEeeC-ccCccCC-ccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCc
Q 003387 517 CGMFKLLRVLDLGS-LVLIQYP-SGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLR 594 (824)
Q Consensus 517 ~~~~~~Lr~L~L~~-~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~ 594 (824)
+..+++|++|+|++ |.+..+| ..|+.|.+|++|+|++|.+..+|+..|.+|++|+.|+|++|.+..+|..+....+|+
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~ 106 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ 106 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCce
Confidence 66666777777775 6666555 456667777777777777776666555677777777777777777765544333377
Q ss_pred eecCCCccCC
Q 003387 595 HLNFGSITLP 604 (824)
Q Consensus 595 ~L~L~~~~~~ 604 (824)
.|+|.+|.+.
T Consensus 107 ~l~l~~N~~~ 116 (347)
T 2ifg_A 107 ELVLSGNPLH 116 (347)
T ss_dssp EEECCSSCCC
T ss_pred EEEeeCCCcc
Confidence 7777766654
No 159
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.55 E-value=1.3e-08 Score=110.17 Aligned_cols=83 Identities=18% Similarity=0.228 Sum_probs=40.5
Q ss_pred CcccEEEeeCccCcc-----CCccCCC-CCcceEEeecCCCCCcc-ChhhhhcCCCccEeecCCccccccc-----hhh-
Q 003387 521 KLLRVLDLGSLVLIQ-----YPSGIEN-LFLLRYLKLNIPSLNSL-PSSLLSNLLNLYTLDMPFSYIDHTA-----DEF- 587 (824)
Q Consensus 521 ~~Lr~L~L~~~~i~~-----lp~~i~~-l~~Lr~L~L~~~~i~~l-p~~i~~~L~~L~~L~L~~~~l~~lp-----~~i- 587 (824)
+.|+.|+|++|.++. +...+.. ..+|++|+|++|.+... ...++..+.+|++|+|++|.+.... ..+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 456666666666541 2222221 24666666666665421 1222234556666666666554322 111
Q ss_pred hccccCceecCCCccC
Q 003387 588 WKMNKLRHLNFGSITL 603 (824)
Q Consensus 588 ~~L~~L~~L~L~~~~~ 603 (824)
...++|++|+|++|.+
T Consensus 152 ~~~~~L~~L~Ls~n~l 167 (372)
T 3un9_A 152 HDQCQITTLRLSNNPL 167 (372)
T ss_dssp STTCCCCEEECCSSCC
T ss_pred hcCCccceeeCCCCCC
Confidence 1345566666666654
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.55 E-value=1.3e-07 Score=101.78 Aligned_cols=95 Identities=20% Similarity=0.064 Sum_probs=80.8
Q ss_pred EEEeeCc-cCccCCccCCCCCcceEEeecC-CCCCccChhhhhcCCCccEeecCCccccccch-hhhccccCceecCCCc
Q 003387 525 VLDLGSL-VLIQYPSGIENLFLLRYLKLNI-PSLNSLPSSLLSNLLNLYTLDMPFSYIDHTAD-EFWKMNKLRHLNFGSI 601 (824)
Q Consensus 525 ~L~L~~~-~i~~lp~~i~~l~~Lr~L~L~~-~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~ 601 (824)
.++++++ .++.+|. |+.+.+|++|+|++ |.+..+|+..|++|++|++|+|++|.+..+|. .|.+|++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4688888 8999999 99999999999996 99999997655999999999999999999875 5899999999999999
Q ss_pred cCCCCCCC--CCCCCCCCCeeecc
Q 003387 602 TLPAHPGK--FCGSLENLNFISAL 623 (824)
Q Consensus 602 ~~~~~~~p--~i~~L~~L~~l~~~ 623 (824)
.+. .+| .+..+. |+.|++.
T Consensus 91 ~l~--~~~~~~~~~~~-L~~l~l~ 111 (347)
T 2ifg_A 91 ALE--SLSWKTVQGLS-LQELVLS 111 (347)
T ss_dssp CCS--CCCSTTTCSCC-CCEEECC
T ss_pred ccc--eeCHHHcccCC-ceEEEee
Confidence 987 344 334443 7777766
No 161
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.50 E-value=1.6e-08 Score=109.47 Aligned_cols=164 Identities=19% Similarity=0.200 Sum_probs=97.8
Q ss_pred CCcceEEeecCCCCCccChhhhhc-----CCCccEeecCCcccccc--chhhhccccCceecCCCccCCCCCCCCCCCCC
Q 003387 543 LFLLRYLKLNIPSLNSLPSSLLSN-----LLNLYTLDMPFSYIDHT--ADEFWKMNKLRHLNFGSITLPAHPGKFCGSLE 615 (824)
Q Consensus 543 l~~Lr~L~L~~~~i~~lp~~i~~~-----L~~L~~L~L~~~~l~~l--p~~i~~L~~L~~L~L~~~~~~~~~~p~i~~L~ 615 (824)
+.+|++|+|++|.+.......+.. ..+|++|+|++|.+... ..-...+++|++|+|++|.+....
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~-------- 142 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEA-------- 142 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHH--------
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHH--------
Confidence 457999999999988543322233 37999999999987642 222345788999999999775200
Q ss_pred CCCeeeccCCCcchhhhc-CCCCccceEEEeccccc--chhhHHHHhccCCCCCeEEEeccCCCCCccEEEe----CccC
Q 003387 616 NLNFISALHPCCCTEDIL-GRLPNLRNLRIRGDLSY--NQSLLSKSLCRLSCLESLKLANESKMPRLSKIVL----AEYL 688 (824)
Q Consensus 616 ~L~~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~--~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l----~~~~ 688 (824)
...+...+ ...++|+.|++++|.-. ....++..+..+++|++|+|++|. +....+ ..+.
T Consensus 143 ----------~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~----l~~~g~~~L~~~L~ 208 (372)
T 3un9_A 143 ----------CKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG----LGDEGLELLAAQLD 208 (372)
T ss_dssp ----------HHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS----CHHHHHHHHHHHGG
T ss_pred ----------HHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC----CCcHHHHHHHHHHh
Confidence 11111212 34678899999888521 224456666777778888887652 221110 0113
Q ss_pred cCCCceEEEEEcccCCCCC----cccccCCCCCCeEEeeccccC
Q 003387 689 FPHSLTHLSFSNTDLMDDP----MPTLEKLPLLQVLKLKQNSYS 728 (824)
Q Consensus 689 ~~~~L~~L~L~~~~l~~~~----~~~l~~l~~L~~L~L~~~~~~ 728 (824)
.+++|+.|+|++|.+.... ...+..+++|++|+|++|.+.
T Consensus 209 ~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 209 RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 3456666666666654322 122334566666666666554
No 162
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.46 E-value=5.4e-08 Score=104.48 Aligned_cols=168 Identities=20% Similarity=0.203 Sum_probs=106.0
Q ss_pred cCCCCccceEEEeccccc-------chhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCccCcCCCceEEEEEcccCCC
Q 003387 633 LGRLPNLRNLRIRGDLSY-------NQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYLFPHSLTHLSFSNTDLMD 705 (824)
Q Consensus 633 l~~l~~L~~L~l~~~~~~-------~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~ 705 (824)
+.++++|+.|.+...... ....+...+..+++|++|.|+++. .+ .+... ..++|++|+|..|.+..
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~---~l---~l~~~-~~~~L~~L~L~~~~l~~ 207 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN---NL---SIGKK-PRPNLKSLEIISGGLPD 207 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB---TC---BCCSC-BCTTCSEEEEECSBCCH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC---Cc---eeccc-cCCCCcEEEEecCCCCh
Confidence 455677888877554210 122456677788899999998642 11 11221 26789999999887755
Q ss_pred CCccccc--CCCCCCeEEeec--cccCCCe-e-----eecCCCCCCccEEeeccCCCCccce---eccCcccCccEEEEe
Q 003387 706 DPMPTLE--KLPLLQVLKLKQ--NSYSGRK-L-----TCGSYGFPNLKVLHLKSMLWLEEWT---MGNAAMPKLECLIIN 772 (824)
Q Consensus 706 ~~~~~l~--~l~~L~~L~L~~--~~~~~~~-~-----~~~~~~~~~L~~L~L~~~~~l~~l~---~~~~~lp~L~~L~l~ 772 (824)
.....++ .+|+|+.|+|+. +...+.. + ......||+|++|.|.+|......+ .....+|+|+.|+++
T Consensus 208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs 287 (362)
T 2ra8_A 208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS 287 (362)
T ss_dssp HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECC
T ss_pred HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECC
Confidence 4444444 789999999863 2222211 1 1122468999999998876433221 122468999999998
Q ss_pred cCCCCC----CCccccccCccCcEEEecCCc--HHHHHHHh
Q 003387 773 PCAYLK----KMPEQLWYIKSLNKFDCWWPQ--PELRQKLR 807 (824)
Q Consensus 773 ~c~~l~----~lp~~l~~l~~L~~L~l~~c~--~~l~~~~~ 807 (824)
.|.... .++.++.++++|+.|++++|+ .+..+.+.
T Consensus 288 ~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~ 328 (362)
T 2ra8_A 288 AGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ 328 (362)
T ss_dssp SSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHH
T ss_pred CCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHH
Confidence 776332 245566788999999999887 33444443
No 163
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.30 E-value=5e-07 Score=95.92 Aligned_cols=123 Identities=15% Similarity=0.175 Sum_probs=75.9
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccC-CCc-eeEEEECCCCCCCCHHHHHHHH
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKH-YFD-CHAWITEPYSNEYDADQILDIV 232 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~F~-~~~wv~~~vs~~~~~~~~~~~i 232 (824)
..+++|++..++.+.+++..+. ...+.|+|++|+||||+|+.+++ .+.. .+. ..+++. .+.......+ +++
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~--~l~~~~~~~~~~~~~--~~~~~~~~~i-~~~ 92 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAH--ELLGRSYADGVLELN--ASDDRGIDVV-RNQ 92 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHH--HHHGGGHHHHEEEEC--TTSCCSHHHH-HTH
T ss_pred HHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHH--HhcCCcccCCEEEec--CccccChHHH-HHH
Confidence 3568999999999999998765 33388999999999999999988 4322 222 244554 4443332222 222
Q ss_pred HHHhCCCCCcccccccCHHHHHHHHHHhc-CCCeEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEechH
Q 003387 233 IKFLMPSSRLSEIMDKNYEMKKIILHEYL-MTKRYLIVIDDVWSI--DMWDVIQEILPDNQNGSRVLITLTDI 302 (824)
Q Consensus 233 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR~~ 302 (824)
+..+.... ..+ .+++.+||+||++.. ..++.+...+.....++++|+||+..
T Consensus 93 ~~~~~~~~------------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~ 147 (323)
T 1sxj_B 93 IKHFAQKK------------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQS 147 (323)
T ss_dssp HHHHHHBC------------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCG
T ss_pred HHHHHhcc------------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCCh
Confidence 22211000 011 356899999999863 34444444433334567888888764
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.24 E-value=1.2e-05 Score=87.74 Aligned_cols=262 Identities=11% Similarity=0.055 Sum_probs=147.8
Q ss_pred hhHhhhcccCcccEEEeeCccCccCCc-cCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccccccch-----
Q 003387 512 DWEKFCGMFKLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTAD----- 585 (824)
Q Consensus 512 ~~~~~~~~~~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~----- 585 (824)
+-...|..|.+|+.+.|..+ ++.++. .+.++.+|+.+++..+ ++.++...|.++.+|+.+.+..+ +..+..
T Consensus 62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~ 138 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG 138 (394)
T ss_dssp ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeec
Confidence 34578899999999999754 666654 4778999999999754 77777777788899988777543 222221
Q ss_pred ------------------hhhccccCceecCCCccCCCCCCC--CCCCCCCCCeeeccCCCcc-hhhhcCCCCccceEEE
Q 003387 586 ------------------EFWKMNKLRHLNFGSITLPAHPGK--FCGSLENLNFISALHPCCC-TEDILGRLPNLRNLRI 644 (824)
Q Consensus 586 ------------------~i~~L~~L~~L~L~~~~~~~~~~p--~i~~L~~L~~l~~~~~~~~-~~~~l~~l~~L~~L~l 644 (824)
.|.++++|+.+.+..+.. .++ .+..+.+|+.+.+..+... ....+..+..|+.+.+
T Consensus 139 ~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~---~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~ 215 (394)
T 4fs7_A 139 CDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSME---TLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEF 215 (394)
T ss_dssp CCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTCC---EECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCC
T ss_pred ccccccccCccccccchhhhcccCCCcEEecCCccc---eeccccccCCCCceEEEcCCCceEeCchhhccccccceeec
Confidence 133444444444332211 111 3333444444443321111 1111333444444333
Q ss_pred ecccccchhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCccCcCCCceEEEEEcccCCCCCcccccCCCCCCeEEeec
Q 003387 645 RGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQ 724 (824)
Q Consensus 645 ~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~ 724 (824)
...... +.........|+.+.+.. .++.+.-..+..+.+|+.+.+..+.. ......+..++.|+.+.+..
T Consensus 216 ~~~~~~----i~~~~~~~~~l~~i~ip~-----~~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~ 285 (394)
T 4fs7_A 216 PNSLYY----LGDFALSKTGVKNIIIPD-----SFTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGS 285 (394)
T ss_dssp CTTCCE----ECTTTTTTCCCCEEEECT-----TCCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECS
T ss_pred CCCceE----eehhhcccCCCceEEECC-----CceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCc
Confidence 222100 001112234455554432 23333333335677888888876532 23345677788888887764
Q ss_pred cccCCCeeeecCCCCCCccEEeeccCCCCcccee-ccCcccCccEEEEecCCCCCCCcc-ccccCccCcEEEecC
Q 003387 725 NSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTM-GNAAMPKLECLIINPCAYLKKMPE-QLWYIKSLNKFDCWW 797 (824)
Q Consensus 725 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~-~~~~lp~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~ 797 (824)
..+.. .....+++|+.+.+.+. +..+.. .+..+++|+.+.|... ++.++. .+.+|++|+.+.+..
T Consensus 286 ~~i~~----~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~ 352 (394)
T 4fs7_A 286 VIVPE----KTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPL 352 (394)
T ss_dssp SEECT----TTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCT
T ss_pred eeecc----ccccccccccccccccc--cceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECc
Confidence 33221 12456789999998653 565543 3556889999998643 555643 577889999988743
No 165
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.16 E-value=8.6e-07 Score=83.53 Aligned_cols=87 Identities=10% Similarity=0.090 Sum_probs=49.1
Q ss_pred CceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCC----CCCccEEeeccCCCCccce-eccCcccCc
Q 003387 692 SLTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYG----FPNLKVLHLKSMLWLEEWT-MGNAAMPKL 766 (824)
Q Consensus 692 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~----~~~L~~L~L~~~~~l~~l~-~~~~~lp~L 766 (824)
+|++|++++|.++......+.++++|+.|+|++|...++.-...+.. .++|++|+|++|..++.-. ..+..+|+|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 57777777777666656666677777777777664322211111222 2356666666666555321 123456666
Q ss_pred cEEEEecCCCCC
Q 003387 767 ECLIINPCAYLK 778 (824)
Q Consensus 767 ~~L~l~~c~~l~ 778 (824)
+.|+|++|+.++
T Consensus 142 ~~L~L~~c~~It 153 (176)
T 3e4g_A 142 KYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCC
T ss_pred CEEECCCCCCCC
Confidence 666666666554
No 166
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.14 E-value=6.9e-06 Score=85.56 Aligned_cols=111 Identities=10% Similarity=0.051 Sum_probs=76.8
Q ss_pred CceechhhHHHHHHHHHcC--CCCeEEEEEEcCCCChHHHHHHHHhCCccccC--------CCceeEEEECCCCCCCCHH
Q 003387 157 DTVGLDDRMEELLDLLIEG--PPQLSVVAILDSIGLDKTAFAGEAYNSSYVKH--------YFDCHAWITEPYSNEYDAD 226 (824)
Q Consensus 157 ~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~--------~F~~~~wv~~~vs~~~~~~ 226 (824)
.+.|||+++++|...|... ......+-|+|++|.|||++|+.|.+ +... .| .++.|. ...-.+..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~--~L~~~~~~~~~~~~-~~v~IN--c~~~~t~~ 95 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMD--ELITSSARKELPIF-DYIHID--ALELAGMD 95 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHH--HHHHTTTTTSSCCE-EEEEEE--TTCCC--H
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhhhccCCce-EEEEEe--ccccCCHH
Confidence 4789999999999888752 34567889999999999999999998 4422 12 345565 66777888
Q ss_pred HHHHHHHHHhCCCCCcccccccCHHHHHHHHHHhc---CCCeEEEEEecCCCh
Q 003387 227 QILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYL---MTKRYLIVIDDVWSI 276 (824)
Q Consensus 227 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L---~~kr~LlVlDdv~~~ 276 (824)
.+...|++++.+... ......+.+. .+.+.+ ++++++++||+++..
T Consensus 96 ~~~~~I~~~L~g~~~---~~~~~~~~L~-~~f~~~~~~~~~~~ii~lDE~d~l 144 (318)
T 3te6_A 96 ALYEKIWFAISKENL---CGDISLEALN-FYITNVPKAKKRKTLILIQNPENL 144 (318)
T ss_dssp HHHHHHHHHHSCCC-----CCCCHHHHH-HHHHHSCGGGSCEEEEEEECCSSS
T ss_pred HHHHHHHHHhcCCCC---CchHHHHHHH-HHHHHhhhccCCceEEEEecHHHh
Confidence 999999999976421 1112223333 333333 457899999999864
No 167
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.07 E-value=0.00012 Score=79.77 Aligned_cols=283 Identities=12% Similarity=0.028 Sum_probs=159.1
Q ss_pred ceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCcc---CccCCc-cCCCCCcceEEeecCCCCCccChhhhhcCCC
Q 003387 494 QLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLV---LIQYPS-GIENLFLLRYLKLNIPSLNSLPSSLLSNLLN 569 (824)
Q Consensus 494 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~---i~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~ 569 (824)
.|+++.+...- ..+-...|..|.+|+.+.+..+. ++.++. .+..+.+|+.+.+.. .+..++...|..+.+
T Consensus 65 ~L~sI~iP~sv-----t~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~-~~~~I~~~aF~~c~~ 138 (394)
T 4gt6_A 65 VLTSVQIPDTV-----TEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD-SVTEIDSEAFHHCEE 138 (394)
T ss_dssp CCCEEEECTTC-----CEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT-TCSEECTTTTTTCTT
T ss_pred cCEEEEECCCe-----eEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC-ccceehhhhhhhhcc
Confidence 47777775432 22445778888888888887653 555543 356677777776654 366666666678888
Q ss_pred ccEeecCCccccccch-hhhccccCceecCCCccCCCCCCC--CCCCCCCCCeeeccCCCc-chhhhcCCCCccceEEEe
Q 003387 570 LYTLDMPFSYIDHTAD-EFWKMNKLRHLNFGSITLPAHPGK--FCGSLENLNFISALHPCC-CTEDILGRLPNLRNLRIR 645 (824)
Q Consensus 570 L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~~~~~~~p--~i~~L~~L~~l~~~~~~~-~~~~~l~~l~~L~~L~l~ 645 (824)
|+.+.+... +..++. .+..+.+|+.+.+..+-. .+. .+. ...|..+.+..... .-...+..+.+|......
T Consensus 139 L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~~~---~I~~~aF~-~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~ 213 (394)
T 4gt6_A 139 LDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDSVT---AIEERAFT-GTALTQIHIPAKVTRIGTNAFSECFALSTITSD 213 (394)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEECCTTCC---EECTTTTT-TCCCSEEEECTTCCEECTTTTTTCTTCCEEEEC
T ss_pred cccccccce-eeeecccceecccccccccccceee---Eecccccc-ccceeEEEECCcccccccchhhhccccceeccc
Confidence 888888543 444443 366778888886654311 111 222 23466666552211 112225556666665554
Q ss_pred cccccchhhH-H----------HHhccCCCCCeEEEeccCCCCCccEEEeCccCcCCCceEEEEEcccCCCCCcccccCC
Q 003387 646 GDLSYNQSLL-S----------KSLCRLSCLESLKLANESKMPRLSKIVLAEYLFPHSLTHLSFSNTDLMDDPMPTLEKL 714 (824)
Q Consensus 646 ~~~~~~~~~l-~----------~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l 714 (824)
.......... . ........+..+.+ +..++...-..+..+.+|+.+.+..... ......+.++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----p~~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c 287 (394)
T 4gt6_A 214 SESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKI-----PNGVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNC 287 (394)
T ss_dssp CSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEEC-----CTTEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTC
T ss_pred ccccccccceeecccccccccccccccccccceEEc-----CCcceEcccceeeecccccEEecccccc-eecCcccccc
Confidence 3321000000 0 00000111222221 1233333333345677888888765431 2234467788
Q ss_pred CCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCcccee-ccCcccCccEEEEecCCCCCCCcc-ccccCccCcE
Q 003387 715 PLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTM-GNAAMPKLECLIINPCAYLKKMPE-QLWYIKSLNK 792 (824)
Q Consensus 715 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~-~~~~lp~L~~L~l~~c~~l~~lp~-~l~~l~~L~~ 792 (824)
++|+.+.+. +.+.. .-...+.++.+|+.+.|.+ .++.+.. .+..+.+|+.+.|-.+ ++.++. .+.+|++|+.
T Consensus 288 ~~L~~i~l~-~~i~~-I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~ 361 (394)
T 4gt6_A 288 PALQDIEFS-SRITE-LPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNN 361 (394)
T ss_dssp TTCCEEECC-TTCCE-ECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCE
T ss_pred cccccccCC-Ccccc-cCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCE
Confidence 889988886 32221 1112345678899988864 2555542 3556789999998643 556654 5788999999
Q ss_pred EEecCCc
Q 003387 793 FDCWWPQ 799 (824)
Q Consensus 793 L~l~~c~ 799 (824)
+.+.+..
T Consensus 362 i~~~~~~ 368 (394)
T 4gt6_A 362 IEYSGSR 368 (394)
T ss_dssp EEESSCH
T ss_pred EEECCce
Confidence 9998876
No 168
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.07 E-value=4.4e-06 Score=89.56 Aligned_cols=84 Identities=21% Similarity=0.250 Sum_probs=37.8
Q ss_pred CCCccceEEEecccccchhhHHHHh---ccCCCCCeEEEeccCCCCCccEEE----eCccCcCCCceEEEEEcccCCCCC
Q 003387 635 RLPNLRNLRIRGDLSYNQSLLSKSL---CRLSCLESLKLANESKMPRLSKIV----LAEYLFPHSLTHLSFSNTDLMDDP 707 (824)
Q Consensus 635 ~l~~L~~L~l~~~~~~~~~~l~~~l---~~l~~L~~L~l~~~~~~~~L~~l~----l~~~~~~~~L~~L~L~~~~l~~~~ 707 (824)
.+++|+.|++.+|. .....+..+ ..+++|++|+|+.|. +..-. ..+...+++|+.|+|++|.++...
T Consensus 250 ~~p~Lr~L~L~~~~--i~~~~~~~la~a~~~~~L~~LdLs~n~----L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 250 RFPNLKWLGIVDAE--EQNVVVEMFLESDILPQLETMDISAGV----LTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp TCTTCCEEEEESCT--THHHHHHHHHHCSSGGGCSEEECCSSC----CBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred CCCCcCEEeCCCCC--CchHHHHHHHhCccCCCCCEEECCCCC----CChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 35566666666553 111111111 234566666665431 22110 111134566777777777654433
Q ss_pred cccccC-CCCCCeEEeeccc
Q 003387 708 MPTLEK-LPLLQVLKLKQNS 726 (824)
Q Consensus 708 ~~~l~~-l~~L~~L~L~~~~ 726 (824)
...+.. + ...++++++.
T Consensus 324 ~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 324 KKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHc--CCEEEecCCc
Confidence 333332 2 2345555443
No 169
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.06 E-value=6e-06 Score=79.89 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=39.1
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
...++|+++.++++.+.+..+. ...+.|+|++|+||||+|+.+++
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999987744 45678999999999999999988
No 170
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.03 E-value=3.2e-06 Score=81.63 Aligned_cols=118 Identities=12% Similarity=0.079 Sum_probs=83.7
Q ss_pred hhHhhhcccCcccEEEeeCc-cCc-----cCCccCCCCCcceEEeecCCCCCc-----cChhhhhcCCCccEeecCCccc
Q 003387 512 DWEKFCGMFKLLRVLDLGSL-VLI-----QYPSGIENLFLLRYLKLNIPSLNS-----LPSSLLSNLLNLYTLDMPFSYI 580 (824)
Q Consensus 512 ~~~~~~~~~~~Lr~L~L~~~-~i~-----~lp~~i~~l~~Lr~L~L~~~~i~~-----lp~~i~~~L~~L~~L~L~~~~l 580 (824)
.+...+...+.|++|+|++| .+. .+...+...++|++|+|++|.+.. +...+ ...++|++|+|++|.+
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L-~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML-KVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHH-HHCSSCCEEECCSSCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHH-HhCCCcCEEECcCCcC
Confidence 45567788889999999998 775 455666777889999999988873 44444 6678899999998877
Q ss_pred cc-----cchhhhccccCceecC--CCccCCCCCCCCCCCCCCCCeeeccCCCcchhhhcCCCCccceEEEeccc
Q 003387 581 DH-----TADEFWKMNKLRHLNF--GSITLPAHPGKFCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIRGDL 648 (824)
Q Consensus 581 ~~-----lp~~i~~L~~L~~L~L--~~~~~~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 648 (824)
.. +...+...++|++|++ ++|.+... ....+.+.+...++|++|+++++.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~------------------g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNN------------------VEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH------------------HHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHH------------------HHHHHHHHHHhCCCcCEEeccCCC
Confidence 64 4566777788888888 66766410 011223335666788888888775
No 171
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.97 E-value=4.5e-06 Score=88.67 Aligned_cols=119 Identities=14% Similarity=0.140 Sum_probs=74.4
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCC-Cc-eeEEEECCCCCCCCHHHHHHHHH
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHY-FD-CHAWITEPYSNEYDADQILDIVI 233 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~-F~-~~~wv~~~vs~~~~~~~~~~~i~ 233 (824)
.+++|++..++.+.+++..+. ...+.|+|++|+||||+|+.+++ .+... +. ..+.+. .+.......+ .+.+
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~--~l~~~~~~~~~~~~~--~~~~~~~~~~-~~~~ 97 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALAR--ELFGENWRHNFLELN--ASDERGINVI-REKV 97 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHH--HHHGGGHHHHEEEEE--TTCHHHHHTT-HHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHH--HhcCCcccCceEEee--ccccCchHHH-HHHH
Confidence 569999999999999998764 33489999999999999999998 43222 11 233444 3321111111 1111
Q ss_pred HHhCCCCCcccccccCHHHHHHHHHHh--c-CCCeEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEechH
Q 003387 234 KFLMPSSRLSEIMDKNYEMKKIILHEY--L-MTKRYLIVIDDVWSI--DMWDVIQEILPDNQNGSRVLITLTDI 302 (824)
Q Consensus 234 ~~l~~~~~~~~~~~~~~~~~~~~l~~~--L-~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR~~ 302 (824)
. ..... + .+++.+||+||++.. ..++.+...+.....++++|+||...
T Consensus 98 ~---------------------~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~ 150 (327)
T 1iqp_A 98 K---------------------EFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYS 150 (327)
T ss_dssp H---------------------HHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred H---------------------HHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCc
Confidence 1 11110 1 257889999999764 45555655554445578888888764
No 172
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.95 E-value=2.9e-06 Score=81.94 Aligned_cols=112 Identities=10% Similarity=0.007 Sum_probs=86.5
Q ss_pred CCceeEeeccCC-CCCCCCcchhHhhhcccCcccEEEeeCccCc-----cCCccCCCCCcceEEeecCCCCCc-----cC
Q 003387 492 DSQLHSLLCCSP-ETRHLDPIDWEKFCGMFKLLRVLDLGSLVLI-----QYPSGIENLFLLRYLKLNIPSLNS-----LP 560 (824)
Q Consensus 492 ~~~Lr~L~l~~~-~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~-----~lp~~i~~l~~Lr~L~L~~~~i~~-----lp 560 (824)
.+.|++|.+.++ .........+...+...+.|++|+|++|.+. .+...+...++|++|+|++|.|.. +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 788999999887 5532111245567778899999999999986 345556667899999999999884 55
Q ss_pred hhhhhcCCCccEeec--CCccccc-----cchhhhccccCceecCCCccCC
Q 003387 561 SSLLSNLLNLYTLDM--PFSYIDH-----TADEFWKMNKLRHLNFGSITLP 604 (824)
Q Consensus 561 ~~i~~~L~~L~~L~L--~~~~l~~-----lp~~i~~L~~L~~L~L~~~~~~ 604 (824)
..+ ...++|++|+| ++|.+.. +...+...++|++|++++|.+.
T Consensus 115 ~~L-~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 115 EAL-QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HGG-GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHH-HhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 555 78889999999 7787764 4556777899999999988763
No 173
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.89 E-value=2.7e-06 Score=90.31 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=38.4
Q ss_pred CCCceechhhHHHHHHHHHcC---CCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDLLIEG---PPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|++..++.+.+++... ......+.|+|+.|+||||+|+.+++
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 467999999999988887631 22346788999999999999999988
No 174
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.81 E-value=9.8e-06 Score=77.97 Aligned_cols=45 Identities=18% Similarity=0.213 Sum_probs=38.7
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-..++|++..++.+.+.+.... ...+.|+|..|+||||+|+.+.+
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRT--KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCCC--CCceEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999997643 45668999999999999999987
No 175
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.80 E-value=1e-05 Score=76.17 Aligned_cols=84 Identities=10% Similarity=0.046 Sum_probs=65.2
Q ss_pred CCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCcccee-ccCc----ccCccEEEEecCCCCCCC-ccccccCc
Q 003387 715 PLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTM-GNAA----MPKLECLIINPCAYLKKM-PEQLWYIK 788 (824)
Q Consensus 715 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~-~~~~----lp~L~~L~l~~c~~l~~l-p~~l~~l~ 788 (824)
.+|+.|++++|.++...+. .+.++++|++|+|++|..++.... .+.. .++|+.|+|++|+.++.- -..+.+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 4799999999987664443 357899999999999998876532 1223 368999999999987641 12466789
Q ss_pred cCcEEEecCCc
Q 003387 789 SLNKFDCWWPQ 799 (824)
Q Consensus 789 ~L~~L~l~~c~ 799 (824)
+|+.|++++||
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 99999999998
No 176
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.77 E-value=1.8e-05 Score=82.12 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=39.7
Q ss_pred CCCCCceechhhHHHHHHHHHcC-----------CCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 153 SKSRDTVGLDDRMEELLDLLIEG-----------PPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 153 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..-++++|.+..+++|.+.+... -...+-+.|+|++|+||||+|+.+++
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 34568999999999998887531 12355689999999999999999988
No 177
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.69 E-value=0.00038 Score=75.82 Aligned_cols=303 Identities=10% Similarity=0.049 Sum_probs=171.5
Q ss_pred CeeEEEEEecCCCccccc-cc--CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCc-cCCCCCcce
Q 003387 472 KAKRLNAVEREGDFACLD-DY--DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPS-GIENLFLLR 547 (824)
Q Consensus 472 ~~r~lsl~~~~~~~~~~~-~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr 547 (824)
.++.+.+. +.... +.. .. |.+|+++.+..+.... ...+....|..|..|+.+.+..+ ++.++. .+..+.+|+
T Consensus 65 ~L~sI~iP-~svt~-Ig~~AF~~C~~L~~i~~~~n~p~~-l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~ 140 (394)
T 4gt6_A 65 VLTSVQIP-DTVTE-IGSNAFYNCTSLKRVTIQDNKPSC-VKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELD 140 (394)
T ss_dssp CCCEEEEC-TTCCE-ECTTTTTTCTTCCEEEEGGGCCCC-CCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCC
T ss_pred cCEEEEEC-CCeeE-EhHHHhhCCccCceEeecCCCCCe-eeEechhhchhcccceeeccCCc-cceehhhhhhhhcccc
Confidence 36667666 43322 322 22 8999999887643211 12345678889999988777654 444443 467789999
Q ss_pred EEeecCCCCCccChhhhhcCCCccEeecCCccccccchhhhccccCceecCCCccCCCCCCCCCCCCCCCCeeeccCCC-
Q 003387 548 YLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKFCGSLENLNFISALHPC- 626 (824)
Q Consensus 548 ~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~~~~~~~p~i~~L~~L~~l~~~~~~- 626 (824)
.+.+.. .+..++...|..+.+|+.+.+..+ +..+........+|+.+.+..+...- ....+..+.+|.........
T Consensus 141 ~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~i-~~~af~~c~~l~~~~~~~~~~ 217 (394)
T 4gt6_A 141 TVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTRI-GTNAFSECFALSTITSDSESY 217 (394)
T ss_dssp EEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCEE-CTTTTTTCTTCCEEEECCSSS
T ss_pred cccccc-eeeeecccceecccccccccccce-eeEeccccccccceeEEEECCccccc-ccchhhhccccceeccccccc
Confidence 999964 456677766789999999999654 55555443345678888665432210 11144555555555433110
Q ss_pred cchhhh--------------cCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCccCcCCC
Q 003387 627 CCTEDI--------------LGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYLFPHS 692 (824)
Q Consensus 627 ~~~~~~--------------l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~ 692 (824)
...... ......+..+.+... ....-...+.++..|+.+.+.. ++..+.-..+..+++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~---v~~i~~~aF~~c~~L~~i~lp~-----~~~~I~~~aF~~c~~ 289 (394)
T 4gt6_A 218 PAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG---VARIETHAFDSCAYLASVKMPD-----SVVSIGTGAFMNCPA 289 (394)
T ss_dssp CBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT---EEEECTTTTTTCSSCCEEECCT-----TCCEECTTTTTTCTT
T ss_pred ccccceeecccccccccccccccccccceEEcCCc---ceEcccceeeecccccEEeccc-----ccceecCcccccccc
Confidence 000000 111122233322211 0011123456778888888753 344443344466788
Q ss_pred ceEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCccce-eccCcccCccEEEE
Q 003387 693 LTHLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWT-MGNAAMPKLECLII 771 (824)
Q Consensus 693 L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~lp~L~~L~l 771 (824)
|+.+.+... +.......|.+|.+|+.+.|..+ +.. .-...+.++.+|+.+.|... +..+. ..+..+++|+.+++
T Consensus 290 L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~-I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 290 LQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQ-ILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEY 364 (394)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEE
T ss_pred cccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccE-ehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEE
Confidence 888888543 33333456888999999999743 211 11123467789999999642 55553 34667899999999
Q ss_pred ecCCCCCCCccccccCccCcEEEecC
Q 003387 772 NPCAYLKKMPEQLWYIKSLNKFDCWW 797 (824)
Q Consensus 772 ~~c~~l~~lp~~l~~l~~L~~L~l~~ 797 (824)
.++... ...+..+.+|+.+.+..
T Consensus 365 ~~~~~~---~~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 365 SGSRSQ---WNAISTDSGLQNLPVAP 387 (394)
T ss_dssp SSCHHH---HHTCBCCCCC-------
T ss_pred CCceee---hhhhhccCCCCEEEeCC
Confidence 876421 13455667788777643
No 178
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.66 E-value=3.4e-05 Score=78.34 Aligned_cols=81 Identities=20% Similarity=0.075 Sum_probs=62.8
Q ss_pred hhhcccCcccEEEeeCccCccC---CccCCCCCcceEEeecCCCCCccChhhhhcCC--CccEeecCCccccc-cc----
Q 003387 515 KFCGMFKLLRVLDLGSLVLIQY---PSGIENLFLLRYLKLNIPSLNSLPSSLLSNLL--NLYTLDMPFSYIDH-TA---- 584 (824)
Q Consensus 515 ~~~~~~~~Lr~L~L~~~~i~~l---p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~--~L~~L~L~~~~l~~-lp---- 584 (824)
.....++.|++|+|++|.+..+ |..+..+++|++|+|++|.+..+ ..+ ..+. +|++|+|++|.+.. +|
T Consensus 164 i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l-~~l~~l~L~~L~L~~Npl~~~~~~~~~ 241 (267)
T 3rw6_A 164 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-REL-DKIKGLKLEELWLDGNSLCDTFRDQST 241 (267)
T ss_dssp HHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGG-GGGTTSCCSEEECTTSTTGGGCSSHHH
T ss_pred HHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhh-hhcccCCcceEEccCCcCccccCcchh
Confidence 3446788999999999998754 45667899999999999999877 334 5565 89999999997763 33
Q ss_pred ---hhhhccccCceec
Q 003387 585 ---DEFWKMNKLRHLN 597 (824)
Q Consensus 585 ---~~i~~L~~L~~L~ 597 (824)
..+..+++|+.||
T Consensus 242 y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 242 YISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHCTTCCEES
T ss_pred HHHHHHHHCcccCeEC
Confidence 2367889999985
No 179
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.62 E-value=8e-05 Score=68.48 Aligned_cols=46 Identities=11% Similarity=0.016 Sum_probs=35.7
Q ss_pred CceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 003387 157 DTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 157 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
+++|+...+.++.+.+..-.....-|-|+|..|+|||++|+.+++.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999988642222334679999999999999999984
No 180
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.61 E-value=3.1e-05 Score=74.20 Aligned_cols=116 Identities=13% Similarity=0.120 Sum_probs=61.9
Q ss_pred chhhHHHHHHHHHcCC-CCeEEEEEEcCCCChHHHHHHHHhCCcccc--CCCceeEEEECCCCCCCCHHHHHHHHHHHhC
Q 003387 161 LDDRMEELLDLLIEGP-PQLSVVAILDSIGLDKTAFAGEAYNSSYVK--HYFDCHAWITEPYSNEYDADQILDIVIKFLM 237 (824)
Q Consensus 161 r~~~~~~l~~~L~~~~-~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~--~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~ 237 (824)
.+...+.+.+++..-. ..-..+.|+|+.|+||||||+.+++ ... ..+ .+++++ ..++...+.....
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~--~~~~~~g~-~~~~~~--------~~~~~~~~~~~~~ 87 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLK--AIYEKKGI-RGYFFD--------TKDLIFRLKHLMD 87 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHH--HHHHHSCC-CCCEEE--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHH--HHHHHcCC-eEEEEE--------HHHHHHHHHHHhc
Confidence 3344444555554322 2357899999999999999999998 432 111 233443 3445555444432
Q ss_pred CCCCcccccccCHHHHHHHHHHhcCCCeEEEEEecCCC--hhhHH--HHHhhCCC-CCCCcEEEEEech
Q 003387 238 PSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWS--IDMWD--VIQEILPD-NQNGSRVLITLTD 301 (824)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~--~~~~~--~l~~~~~~-~~~gs~ilvTtR~ 301 (824)
.... ......+. +.-+|||||++. .+.|. .+...+.. ...|..+|+||..
T Consensus 88 ~~~~---------~~~~~~~~-----~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 88 EGKD---------TKFLKTVL-----NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp HTCC---------SHHHHHHH-----TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CchH---------HHHHHHhc-----CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 2111 11222221 456899999983 33332 22222211 1246778888854
No 181
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.57 E-value=0.00019 Score=77.47 Aligned_cols=45 Identities=22% Similarity=0.196 Sum_probs=38.5
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+++|++..++.+.+.+..+. ....+.|+|+.|+||||+|+.+.+
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 469999999999999997654 234778999999999999999877
No 182
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.51 E-value=0.00013 Score=74.51 Aligned_cols=48 Identities=17% Similarity=0.148 Sum_probs=36.9
Q ss_pred CCCCceechhhHHHHHHHHHc---CC-------CCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 154 KSRDTVGLDDRMEELLDLLIE---GP-------PQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~L~~---~~-------~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.-++++|.+..++.+.+++.. .+ ...+-+.|+|++|+||||+|+.+.+
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 346789999888888766532 11 2345678999999999999999998
No 183
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.50 E-value=4e-05 Score=80.90 Aligned_cols=120 Identities=14% Similarity=0.133 Sum_probs=74.2
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccc-cCCCc-eeEEEECCCCCCCCHHHHHHHHH
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYV-KHYFD-CHAWITEPYSNEYDADQILDIVI 233 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~-~~~F~-~~~wv~~~vs~~~~~~~~~~~i~ 233 (824)
.+++|++..++.+.+++..+. ...+.++|++|+||||+|+.+.+ .+ ...+. ..+.+. .+.......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~--~l~~~~~~~~~~~~~--~~~~~~~~~------ 84 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALAR--DLFGENWRDNFIEMN--ASDERGIDV------ 84 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHH--HHHTTCHHHHCEEEE--TTSTTCTTT------
T ss_pred HHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHH--HhcCCcccCCeEEEe--CccccChHH------
Confidence 568999999999988887654 33489999999999999999987 33 12222 233444 333211000
Q ss_pred HHhCCCCCcccccccCHHHHHHHHHHh--c-CCCeEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEechHH
Q 003387 234 KFLMPSSRLSEIMDKNYEMKKIILHEY--L-MTKRYLIVIDDVWSI--DMWDVIQEILPDNQNGSRVLITLTDIR 303 (824)
Q Consensus 234 ~~l~~~~~~~~~~~~~~~~~~~~l~~~--L-~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR~~~ 303 (824)
........... + .+++.++|+||+... ...+.+...+.....+.++|+||....
T Consensus 85 ----------------~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 143 (319)
T 2chq_A 85 ----------------VRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (319)
T ss_dssp ----------------SSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGG
T ss_pred ----------------HHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 01111111111 1 256889999999754 345666666665556788888886543
No 184
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.49 E-value=0.00018 Score=76.06 Aligned_cols=120 Identities=14% Similarity=0.117 Sum_probs=74.1
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHH
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIK 234 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~ 234 (824)
-++++|.+..++.+.+++..+. ...++-+.|+.|+||||+|+.+.+ ... ...+.+. .+.. ....+ ++++.
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~--~l~---~~~~~i~--~~~~-~~~~i-~~~~~ 94 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCH--DVN---ADMMFVN--GSDC-KIDFV-RGPLT 94 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHH--HTT---EEEEEEE--TTTC-CHHHH-HTHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHH--HhC---CCEEEEc--cccc-CHHHH-HHHHH
Confidence 3679999999999999998654 235778889999999999999988 432 2344555 4432 22222 22111
Q ss_pred HhCCCCCcccccccCHHHHHHHHHHhcCCCeEEEEEecCCChh---hHHHHHhhCCCCCCCcEEEEEechHH
Q 003387 235 FLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWSID---MWDVIQEILPDNQNGSRVLITLTDIR 303 (824)
Q Consensus 235 ~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~---~~~~l~~~~~~~~~gs~ilvTtR~~~ 303 (824)
...... ...+++-+|++||+.... ..+.+...+.....+.++|+||....
T Consensus 95 ~~~~~~-------------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 95 NFASAA-------------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp HHHHBC-------------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred HHHhhc-------------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 110000 012478899999998653 34444443333234567888876643
No 185
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.46 E-value=0.00014 Score=76.32 Aligned_cols=45 Identities=13% Similarity=0.082 Sum_probs=35.7
Q ss_pred CceechhhHHHHHHHHHcC-------------CCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 157 DTVGLDDRMEELLDLLIEG-------------PPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 157 ~~vGr~~~~~~l~~~L~~~-------------~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.++|.+..++.|.+++... ......+.|+|.+|+|||++|+.+.+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 5889999988888766421 23456789999999999999998877
No 186
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.41 E-value=0.00011 Score=67.44 Aligned_cols=47 Identities=15% Similarity=0.074 Sum_probs=34.0
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
-.++|.+..++++.+.+..-.....-|-|+|..|+|||++|+.+++.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 46789999999988887642111234679999999999999999983
No 187
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.38 E-value=0.00018 Score=75.94 Aligned_cols=48 Identities=23% Similarity=0.245 Sum_probs=38.8
Q ss_pred CCCCceechhhHHHHHHHHHc----------CCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 154 KSRDTVGLDDRMEELLDLLIE----------GPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.-++++|.+..++.|.+.+.. .....+-|-++|++|+|||+||+++.+
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 346899999999999888731 122346789999999999999999998
No 188
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.35 E-value=0.00054 Score=70.37 Aligned_cols=47 Identities=19% Similarity=0.140 Sum_probs=36.4
Q ss_pred CCCceechhhHHHHHHH-------HHc-CCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDL-------LIE-GPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~-------L~~-~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
...++|.+..+++++.. +.. .......+-|+|+.|+|||++|+.+.+
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 35688888887777763 322 234577899999999999999999998
No 189
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.33 E-value=0.00088 Score=70.55 Aligned_cols=49 Identities=22% Similarity=0.277 Sum_probs=38.9
Q ss_pred CCCCCceechhhHHHHHHHHHc---------C-CCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 153 SKSRDTVGLDDRMEELLDLLIE---------G-PPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 153 ~~~~~~vGr~~~~~~l~~~L~~---------~-~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
+.-++++|.+..++.|.+.+.. + ....+-|-++|++|+|||+||+++.+
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHH
Confidence 3446899999999998887742 1 12346788999999999999999998
No 190
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.32 E-value=0.00033 Score=68.35 Aligned_cols=51 Identities=14% Similarity=0.067 Sum_probs=36.0
Q ss_pred hHHHHHHHHHcCCCC--eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEE
Q 003387 164 RMEELLDLLIEGPPQ--LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIT 216 (824)
Q Consensus 164 ~~~~l~~~L~~~~~~--~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~ 216 (824)
.++.+.+++...... ...+.|+|.+|+||||||+.+++ ........++|++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~ 89 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVY 89 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEE
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEE
Confidence 445555666544221 26889999999999999999998 5544445667776
No 191
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.25 E-value=0.0035 Score=67.64 Aligned_cols=77 Identities=9% Similarity=0.029 Sum_probs=38.9
Q ss_pred CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCcc-CCCCCcceEEeecCCCCCccChhhhhcCCCc
Q 003387 492 DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSLNSLPSSLLSNLLNL 570 (824)
Q Consensus 492 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L 570 (824)
..+++++.+...- ..+....|..|.+|+.+.|..+ ++.++.. +.++ .|..+.+.. .+..++...|.. .+|
T Consensus 45 ~~~i~~v~ip~~v-----t~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~-~~L 115 (379)
T 4h09_A 45 RDRISEVRVNSGI-----TSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQG-TDL 115 (379)
T ss_dssp GGGCSEEEECTTE-----EEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTT-CCC
T ss_pred ccCCEEEEeCCCc-----cChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEeccceecc-CCc
Confidence 4455665554321 1234456677777777777543 4444433 3333 455555432 345555544333 356
Q ss_pred cEeecCC
Q 003387 571 YTLDMPF 577 (824)
Q Consensus 571 ~~L~L~~ 577 (824)
+.+.+..
T Consensus 116 ~~i~lp~ 122 (379)
T 4h09_A 116 DDFEFPG 122 (379)
T ss_dssp SEEECCT
T ss_pred ccccCCC
Confidence 6666643
No 192
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.24 E-value=8.3e-05 Score=74.74 Aligned_cols=57 Identities=9% Similarity=0.050 Sum_probs=38.7
Q ss_pred CCceec---hhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEE
Q 003387 156 RDTVGL---DDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIT 216 (824)
Q Consensus 156 ~~~vGr---~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~ 216 (824)
+.++|. +...+.+..+...+ ....+.|+|++|+||||+|+.+.+ ........+.|+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~ 87 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACA--RANELERRSFYIP 87 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEE
T ss_pred hhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEE
Confidence 456663 34455555555543 356788999999999999999988 4443334566776
No 193
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.22 E-value=0.00048 Score=75.90 Aligned_cols=121 Identities=18% Similarity=0.233 Sum_probs=67.7
Q ss_pred Cce-echhh--HHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCc--eeEEEECCCCCCCCHHHHHHH
Q 003387 157 DTV-GLDDR--MEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFD--CHAWITEPYSNEYDADQILDI 231 (824)
Q Consensus 157 ~~v-Gr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~--~~~wv~~~vs~~~~~~~~~~~ 231 (824)
.++ |.... ...+......... ...+.|+|.+|+||||||+.+++ .....|. .+++++ ...+..+
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~--------~~~~~~~ 174 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYIT--------SEKFLND 174 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEE--------HHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEee--------HHHHHHH
Confidence 444 64433 3334444433332 67889999999999999999998 5544432 234554 2234444
Q ss_pred HHHHhCCCCCcccccccCHHHHHHHHHHhcCCCeEEEEEecCCChh----hHHHHHhhCCC-CCCCcEEEEEech
Q 003387 232 VIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWSID----MWDVIQEILPD-NQNGSRVLITLTD 301 (824)
Q Consensus 232 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~ilvTtR~ 301 (824)
+...+... . ...+.+.+..+.-+|++||+.... ..+.+...+.. ...|..||+||..
T Consensus 175 ~~~~~~~~---------~----~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 175 LVDSMKEG---------K----LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp HHHHHHTT---------C----HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred HHHHHHcc---------c----HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 54444321 1 112333444466799999996432 22333333221 2346789998875
No 194
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.22 E-value=0.00024 Score=72.03 Aligned_cols=62 Identities=27% Similarity=0.228 Sum_probs=47.5
Q ss_pred CCCCcceEEeecCCCCCccC---hhhhhcCCCccEeecCCccccccchhhhccc--cCceecCCCccCC
Q 003387 541 ENLFLLRYLKLNIPSLNSLP---SSLLSNLLNLYTLDMPFSYIDHTADEFWKMN--KLRHLNFGSITLP 604 (824)
Q Consensus 541 ~~l~~Lr~L~L~~~~i~~lp---~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~--~L~~L~L~~~~~~ 604 (824)
.++++|++|+|++|.+..++ ..+ .++++|++|+|++|.+..+. .+..+. +|+.|+|++|.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~-~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIV-QKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHH-HHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHH-hhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCc
Confidence 35778999999998887654 444 78899999999988888773 355555 8888888888765
No 195
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.21 E-value=0.0012 Score=68.78 Aligned_cols=48 Identities=29% Similarity=0.256 Sum_probs=39.0
Q ss_pred CCCCceechhhHHHHHHHHHc-----------CCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 154 KSRDTVGLDDRMEELLDLLIE-----------GPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.-++++|.+..+++|.+++.. +-...+.|.|+|++|.||||||+.+.+
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHH
Confidence 345799999999988887753 123356789999999999999999998
No 196
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.19 E-value=0.00031 Score=75.28 Aligned_cols=48 Identities=10% Similarity=0.076 Sum_probs=38.9
Q ss_pred CCCCceechhhHHHHHHHHHc----------CCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 154 KSRDTVGLDDRMEELLDLLIE----------GPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.-.+++|.+..++.|.+.+.. .....+.|.|+|+.|+||||+|+.+.+
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999888753 112356788999999999999999988
No 197
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.17 E-value=0.0027 Score=68.22 Aligned_cols=47 Identities=28% Similarity=0.232 Sum_probs=37.6
Q ss_pred CCCceechhhHHH---HHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEE---LLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+.++|++..++. +.+.+..+....+.+-|+|++|+|||++|+.+.+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4579999988776 4555555543346889999999999999999998
No 198
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.04 E-value=0.0011 Score=70.78 Aligned_cols=44 Identities=9% Similarity=-0.051 Sum_probs=35.6
Q ss_pred CCceechhhHHHHHHHH-HcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLL-IEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L-~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+++|.+..++.+.+++ ..+. ... +.|+|+.|+||||+|+.+.+
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHH
Confidence 56889999998888887 4433 223 89999999999999998766
No 199
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.03 E-value=0.00037 Score=76.75 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=38.3
Q ss_pred CCCceechhhH---HHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRM---EELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~---~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-++++|.+..+ ..+...+..+. ...+.|+|.+|+||||+|+.+.+
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHH
Confidence 35789988888 67777887765 57789999999999999999998
No 200
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.03 E-value=0.00066 Score=72.58 Aligned_cols=48 Identities=23% Similarity=0.231 Sum_probs=37.9
Q ss_pred CCCCceechhhHHHHHHHHHcC----------CCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 154 KSRDTVGLDDRMEELLDLLIEG----------PPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.-.+++|.+..++.|.+.+... ....+-|-++|++|+|||+||+++++
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 3467999999999998877421 12234578999999999999999998
No 201
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.03 E-value=0.00055 Score=73.23 Aligned_cols=45 Identities=16% Similarity=0.079 Sum_probs=38.6
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|++..++.+..++..+. ...+.|+|+.|+||||+|+.+.+
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999987764 22388999999999999999988
No 202
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.03 E-value=0.00089 Score=68.41 Aligned_cols=47 Identities=19% Similarity=0.181 Sum_probs=34.5
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
+.++|.+..+.++.+.+..-.....-|-|+|..|+|||++|+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 46889999999988877652222345779999999999999999983
No 203
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.02 E-value=0.00093 Score=72.51 Aligned_cols=48 Identities=21% Similarity=0.185 Sum_probs=38.7
Q ss_pred CCCCceechhhHHHHHHHHHcC----------CCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 154 KSRDTVGLDDRMEELLDLLIEG----------PPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.-.+++|.+..++.|.+++... ....+-|-|+|..|+|||++|+.+.+
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999887321 11246789999999999999999987
No 204
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.98 E-value=0.0015 Score=68.83 Aligned_cols=113 Identities=15% Similarity=0.092 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCccc
Q 003387 165 MEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSE 244 (824)
Q Consensus 165 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~ 244 (824)
...+..++.........+.|+|++|+||||||+.+++ .....-..+++++ . .++..++...+...
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~--~~~~~~~~~~~i~--~------~~~~~~~~~~~~~~----- 87 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGN--EAKKRGYRVIYSS--A------DDFAQAMVEHLKKG----- 87 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHH--HHHHTTCCEEEEE--H------HHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHH--HHHHCCCEEEEEE--H------HHHHHHHHHHHHcC-----
Confidence 3445555544433456789999999999999999998 3322111234444 2 23334444333211
Q ss_pred ccccCHHHHHHHHHHhcCCCeEEEEEecCCChh---h-HHHHHhhCCC-CCCCcEEEEEech
Q 003387 245 IMDKNYEMKKIILHEYLMTKRYLIVIDDVWSID---M-WDVIQEILPD-NQNGSRVLITLTD 301 (824)
Q Consensus 245 ~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~---~-~~~l~~~~~~-~~~gs~ilvTtR~ 301 (824)
..... .+.+ .+.-+|++||+.... . .+.+...+.. ...|.+||+||..
T Consensus 88 ----~~~~~----~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 88 ----TINEF----RNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 140 (324)
T ss_dssp ----CHHHH----HHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred ----cHHHH----HHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 11111 1222 235699999996542 1 2233322221 1235678888763
No 205
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.93 E-value=0.0017 Score=73.22 Aligned_cols=47 Identities=15% Similarity=0.125 Sum_probs=39.8
Q ss_pred CCCceechhhHHHHHHHHHcCC---------------CCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDLLIEGP---------------PQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~---------------~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|++..++++.+++.... +..+.+.|+|++|+||||+|+.+.+
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3679999999999999997510 1347899999999999999999998
No 206
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.92 E-value=0.0014 Score=68.22 Aligned_cols=48 Identities=19% Similarity=0.181 Sum_probs=38.8
Q ss_pred CCCCceechhhHHHHHHHHHcC----------CCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 154 KSRDTVGLDDRMEELLDLLIEG----------PPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.-++++|.+..++.+.+++... ....+.+.|+|++|+||||+|+.+.+
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 3467999999999998887431 11246789999999999999999998
No 207
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.91 E-value=0.0012 Score=72.84 Aligned_cols=49 Identities=20% Similarity=0.225 Sum_probs=39.1
Q ss_pred CCCCCceechhhHHHHHHHHHc----------CCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 153 SKSRDTVGLDDRMEELLDLLIE----------GPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 153 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
+.-++++|.+..++.|.+.+.. .....+-|-++|++|+|||+||+.+++
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999887731 112346788999999999999999998
No 208
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.81 E-value=0.00071 Score=62.28 Aligned_cols=36 Identities=11% Similarity=-0.009 Sum_probs=26.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEE
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIT 216 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~ 216 (824)
-..++|+|..|+|||||++.+++ .....=..++++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~--~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVA--QALEAGKNAAYID 71 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHH--HHHTTTCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--HHHhcCCcEEEEc
Confidence 46899999999999999999998 3322111256666
No 209
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.76 E-value=0.0016 Score=69.24 Aligned_cols=44 Identities=16% Similarity=0.198 Sum_probs=37.0
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+++|.+..++.+...+..+. ...+.++|+.|+||||+|+.+.+
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 467898888888888887764 33389999999999999999988
No 210
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.75 E-value=0.00094 Score=69.99 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=37.4
Q ss_pred CCceechhhHHHHHHHHHcC-------CCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIEG-------PPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..++|.+..++.+...+... ......+.++|..|+||||+|+.+.+
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH
Confidence 35779999988888887653 11246899999999999999999988
No 211
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.70 E-value=0.00032 Score=71.90 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=36.4
Q ss_pred CCCCceechhhHHHHHHHHHc----------CCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 154 KSRDTVGLDDRMEELLDLLIE----------GPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.-++++|.+..++.+.+.+.. +....+-+.|+|++|+|||++|+.+++
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 346799999998888876652 111123367999999999999999998
No 212
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.66 E-value=0.0019 Score=71.79 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=37.9
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
++++|++..++++++.|.... ..-+-++|.+|+||||+|+.+.+
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 579999999999999997644 33457999999999999999987
No 213
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.64 E-value=0.0019 Score=77.68 Aligned_cols=45 Identities=16% Similarity=0.310 Sum_probs=38.6
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-++++||+.+++++++.|.... ..-+.++|.+|+||||+|+.+.+
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHH
T ss_pred CcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHH
Confidence 3578999999999999997754 33468999999999999999987
No 214
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.64 E-value=0.0031 Score=65.65 Aligned_cols=46 Identities=22% Similarity=0.221 Sum_probs=37.2
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
+.++|....+.++.+.+..-.....-|-|+|..|+|||++|+.+++
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHH
Confidence 4688999999999998876322234567999999999999999988
No 215
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.64 E-value=0.0048 Score=60.68 Aligned_cols=90 Identities=11% Similarity=0.025 Sum_probs=53.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCC-------ccc-ccccC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSR-------LSE-IMDKN 249 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~-------~~~-~~~~~ 249 (824)
.-.++.|+|.+|+||||||..+.. . .-..++|++ ....++..++.+ +.+..+.... ... ....+
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~--~---~~~~v~~i~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL--L---SGKKVAYVD--TEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKE 90 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--H---HCSEEEEEE--SSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--H---cCCcEEEEE--CCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHH
Confidence 356899999999999999999877 1 124678888 666556655543 3333322100 000 01111
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCC
Q 003387 250 YEMKKIILHEYLMTKRYLIVIDDVWS 275 (824)
Q Consensus 250 ~~~~~~~l~~~L~~kr~LlVlDdv~~ 275 (824)
..+....++..++.+.-+||+|.+-.
T Consensus 91 ~~~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 91 QRRVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHHHhhcCCCEEEEcCcHH
Confidence 23344555556554577999999854
No 216
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.62 E-value=0.0026 Score=70.18 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=35.8
Q ss_pred CCCCceechhhHHHHHHHHHc---C-------CCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 154 KSRDTVGLDDRMEELLDLLIE---G-------PPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~L~~---~-------~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.-.+++|.++.++++.+.+.. . ..-.+-|.++|++|.||||||+.+.+
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 346799999888777766532 1 11123477999999999999999998
No 217
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.54 E-value=0.0025 Score=64.67 Aligned_cols=48 Identities=25% Similarity=0.231 Sum_probs=35.6
Q ss_pred CCCCceechhhHHHHHHHHH---cC-------CCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 154 KSRDTVGLDDRMEELLDLLI---EG-------PPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~L~---~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.-++++|.+..++++.+.+. .. ....+-+.|+|..|+||||+|+.+.+
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 34679999988887766543 21 01133478999999999999999998
No 218
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.53 E-value=0.0057 Score=72.63 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=38.1
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
++++||+.+++++++.|.... ..-+.++|.+|+||||+|+.+.+
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999987654 34567999999999999999987
No 219
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.44 E-value=0.031 Score=60.13 Aligned_cols=277 Identities=9% Similarity=-0.002 Sum_probs=121.5
Q ss_pred CCeeEEEEEecCCCcccccc-c--CCceeEeeccCCCCCCCCcchhHhhhcccCcccEEEeeCccCccCCccCCCCCcce
Q 003387 471 KKAKRLNAVEREGDFACLDD-Y--DSQLHSLLCCSPETRHLDPIDWEKFCGMFKLLRVLDLGSLVLIQYPSGIENLFLLR 547 (824)
Q Consensus 471 ~~~r~lsl~~~~~~~~~~~~-~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr 547 (824)
.+++.+.+. ..... +.+. . |.+|+++.+...- ..+....|..+ .|..+.+..+ ++.++.......+|+
T Consensus 46 ~~i~~v~ip-~~vt~-Ig~~aF~~C~~L~~I~lp~~v-----~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~ 116 (379)
T 4h09_A 46 DRISEVRVN-SGITS-IGEANFNSCYNMTKVTVASTV-----TSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLD 116 (379)
T ss_dssp GGCSEEEEC-TTEEE-ECTTTTTTCTTCCEEEECTTC-----CEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCS
T ss_pred cCCEEEEeC-CCccC-hHHHHhhCCCCCCEEEeCCcc-----eEechhhhcCC-CCceEECCce-eeEeccceeccCCcc
Confidence 345666665 32222 3322 2 7889998885432 22445677777 4666665433 555554443445788
Q ss_pred EEeecCCCCCccChhhhhcCCCccEeecCCccccccc-hhhhccccCceecCCCccCCC----------C-CCC-CCCCC
Q 003387 548 YLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYIDHTA-DEFWKMNKLRHLNFGSITLPA----------H-PGK-FCGSL 614 (824)
Q Consensus 548 ~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~~~~----------~-~~p-~i~~L 614 (824)
.+.+..+ +..+....|.+. +|..+.+..+ +..+. ..+..+.+|....+..+.... . ... .+...
T Consensus 117 ~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (379)
T 4h09_A 117 DFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAA 193 (379)
T ss_dssp EEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTT
T ss_pred cccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccc
Confidence 8887653 444444443333 4444444322 22222 224455555555443321110 0 000 12222
Q ss_pred CCCCeeeccCCC-cchhhhcCCCCccceEEEecccccchhhHHHHhccCCCCCeEEEeccCCCCCccEEEeCccCcCCCc
Q 003387 615 ENLNFISALHPC-CCTEDILGRLPNLRNLRIRGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIVLAEYLFPHSL 693 (824)
Q Consensus 615 ~~L~~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~l~l~~~~~~~~L 693 (824)
..+..+.+.... ......+..+.+|+.+.+.... ...-...+.++..|+.+.+.. +++.+.-..+..+.+|
T Consensus 194 ~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~---~~i~~~~f~~~~~L~~i~lp~-----~v~~I~~~aF~~~~~l 265 (379)
T 4h09_A 194 KTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGV---TTLGDGAFYGMKALDEIAIPK-----NVTSIGSFLLQNCTAL 265 (379)
T ss_dssp CCCSEEECCTTCCEECTTTTTTCSSCSEEECCTTC---CEECTTTTTTCSSCCEEEECT-----TCCEECTTTTTTCTTC
T ss_pred ccccccccccceeEEeecccccccccceeeeccce---eEEccccccCCccceEEEcCC-----CccEeCccccceeehh
Confidence 333333333111 1111114445556665554321 111112344556666666543 2343333333445555
Q ss_pred eEEEEEcccCCCCCcccccCCCCCCeEEeeccccCCCeeeecCCCCCCccEEeeccCCCCcccee-ccCcccCccEEEE
Q 003387 694 THLSFSNTDLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTM-GNAAMPKLECLII 771 (824)
Q Consensus 694 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~-~~~~lp~L~~L~l 771 (824)
+.+.+..+ +.......+.++++|+.+.+.++.+.. .-...+.++.+|+.+.|.+ .++.+.. .+..+++|+.+.+
T Consensus 266 ~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~-I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 266 KTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIET-LEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp CEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCE-ECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred cccccccc-ceeccccccccccccccccccccccce-ehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence 55555432 122223345556666666665333221 0011233455566665542 1333321 2334455555544
No 220
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.34 E-value=0.0026 Score=70.68 Aligned_cols=47 Identities=15% Similarity=0.137 Sum_probs=38.3
Q ss_pred CCCceechhhHHHHHHHHHcC-----------CCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDLLIEG-----------PPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|.+..+++|.+++... ....+-|-|+|.+|.|||++|+++.+
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH
Confidence 356899999999998877532 23345688999999999999999988
No 221
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.34 E-value=0.018 Score=60.87 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=29.6
Q ss_pred hhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 162 DDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 162 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
++..+.+.+.+..+. -...+-++|+.|+||||+|+.+.+
T Consensus 8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~ 46 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSR 46 (334)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHH
Confidence 455666777766543 245788999999999999998866
No 222
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.33 E-value=0.015 Score=60.41 Aligned_cols=118 Identities=13% Similarity=0.056 Sum_probs=69.9
Q ss_pred echhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCc-cccCCCceeEEEECCCCC-CCCHHHHHHHHHHHhC
Q 003387 160 GLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSS-YVKHYFDCHAWITEPYSN-EYDADQILDIVIKFLM 237 (824)
Q Consensus 160 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~-~~~~~F~~~~wv~~~vs~-~~~~~~~~~~i~~~l~ 237 (824)
|-++.++.+.+.+..+. ....-++|+.|+||||+|+.+.+.. .....+....++. .+. ...+.++ +++.+.+.
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~--~~~~~~~id~i-r~li~~~~ 75 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID--PEGENIGIDDI-RTIKDFLN 75 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC--CSSSCBCHHHH-HHHHHHHT
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc--CCcCCCCHHHH-HHHHHHHh
Confidence 34556677777777665 6788899999999999999997621 0111122334554 432 3343333 33444443
Q ss_pred CCCCcccccccCHHHHHHHHHHhcCCCeEEEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEechH
Q 003387 238 PSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWSI--DMWDVIQEILPDNQNGSRVLITLTDI 302 (824)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR~~ 302 (824)
... ..+++-++|+|++... ...+.+...+....+.+.+|++|.+.
T Consensus 76 ~~p--------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~ 122 (305)
T 2gno_A 76 YSP--------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRW 122 (305)
T ss_dssp SCC--------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCG
T ss_pred hcc--------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECCh
Confidence 211 1246678899999754 45566665555445567777777554
No 223
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.32 E-value=0.018 Score=60.85 Aligned_cols=101 Identities=21% Similarity=0.076 Sum_probs=63.0
Q ss_pred HHHHHHHH-cCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCc-c
Q 003387 166 EELLDLLI-EGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRL-S 243 (824)
Q Consensus 166 ~~l~~~L~-~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~-~ 243 (824)
..+-..|. .+=..-+++.|+|.+|+||||||..+... ....=..++|++ ....++.. .+++++..... .
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId--~E~s~~~~-----ra~rlgv~~~~l~ 117 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFID--AEHALDPV-----YAKNLGVDLKSLL 117 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEE--SSCCCCHH-----HHHHHTCCGGGCE
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEe--cccccchH-----HHHHcCCchhhhh
Confidence 44555554 33234579999999999999999998873 322223578998 66666654 55666543211 0
Q ss_pred cccccCHHHHHHHHHHhcC-CCeEEEEEecCCC
Q 003387 244 EIMDKNYEMKKIILHEYLM-TKRYLIVIDDVWS 275 (824)
Q Consensus 244 ~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~ 275 (824)
-....+.++....+...++ .+.-++|+|.+-.
T Consensus 118 i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 118 ISQPDHGEQALEIVDELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp EECCSSHHHHHHHHHHHHHTSCCSEEEEECTTT
T ss_pred hhhccCHHHHHHHHHHHhhhcCCCeEEehHhhh
Confidence 1223455666666666554 4555899999854
No 224
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.16 E-value=0.0059 Score=66.25 Aligned_cols=53 Identities=21% Similarity=0.218 Sum_probs=40.6
Q ss_pred CCCceechhhHHHHHHHHHc-----------CCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCC
Q 003387 155 SRDTVGLDDRMEELLDLLIE-----------GPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYF 209 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F 209 (824)
-+++.|.++.+++|.+.+.. +-...+=|-++|++|.|||+||+++.+ +..-.|
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~--e~~~~~ 243 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA--TIGANF 243 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCE
Confidence 35688999998888776643 123457788999999999999999999 554433
No 225
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.10 E-value=0.0059 Score=66.09 Aligned_cols=55 Identities=24% Similarity=0.200 Sum_probs=41.8
Q ss_pred CCCCCceechhhHHHHHHHHHc-----------CCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCC
Q 003387 153 SKSRDTVGLDDRMEELLDLLIE-----------GPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYF 209 (824)
Q Consensus 153 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F 209 (824)
+.-+++.|.++.+++|.+.+.. +-...+=|-++|++|.|||+||+++.+ +..-.|
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~--~~~~~~ 234 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN--STKAAF 234 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH--HHTCEE
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCCe
Confidence 3346789999999998876642 223456688999999999999999999 554433
No 226
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.08 E-value=0.0042 Score=66.33 Aligned_cols=55 Identities=22% Similarity=0.216 Sum_probs=41.4
Q ss_pred CCCCCceechhhHHHHHHHHHc-----------CCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCC
Q 003387 153 SKSRDTVGLDDRMEELLDLLIE-----------GPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYF 209 (824)
Q Consensus 153 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F 209 (824)
+.-+++.|.++.+++|.+.+.- +-...+=|-++|++|.|||.||+++.+ +....|
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f 210 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF 210 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc
Confidence 3446789999999888776542 223356688999999999999999999 554444
No 227
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.08 E-value=0.0029 Score=65.16 Aligned_cols=70 Identities=13% Similarity=0.119 Sum_probs=45.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCC--CCCCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHH
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPY--SNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKII 256 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~v--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 256 (824)
-+++-|+|++|+||||||.++... .-..++|++ . .+..+ . .. .+.+.....
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs--~~~eE~v~-------------~------~~-~~le~~l~~ 175 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYAT--VRFGEPLS-------------G------YN-TDFNVFVDD 175 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEE--EEBSCSST-------------T------CB-CCHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEE--ecchhhhh-------------h------hh-cCHHHHHHH
Confidence 456789999999999999999873 122355676 4 22211 0 01 234556666
Q ss_pred HHHhcCCCeEEEEEecCCCh
Q 003387 257 LHEYLMTKRYLIVIDDVWSI 276 (824)
Q Consensus 257 l~~~L~~kr~LlVlDdv~~~ 276 (824)
+.+.+.+.+ +||+|++...
T Consensus 176 i~~~l~~~~-LLVIDsI~aL 194 (331)
T 2vhj_A 176 IARAMLQHR-VIVIDSLKNV 194 (331)
T ss_dssp HHHHHHHCS-EEEEECCTTT
T ss_pred HHHHHhhCC-EEEEeccccc
Confidence 666666556 9999999653
No 228
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.06 E-value=0.0061 Score=72.26 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=38.1
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
++++|++..++++++.|.... ..-+-++|.+|+||||+|+.+.+
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 579999999999999998754 33467999999999999999887
No 229
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.0048 Score=66.78 Aligned_cols=55 Identities=22% Similarity=0.217 Sum_probs=41.4
Q ss_pred CCCCCceechhhHHHHHHHHHc-----------CCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCC
Q 003387 153 SKSRDTVGLDDRMEELLDLLIE-----------GPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYF 209 (824)
Q Consensus 153 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F 209 (824)
+.-+++.|.++.+++|.+.+.. +-...+=|-++|++|.|||+||+++.+ +....|
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f 271 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF 271 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe
Confidence 3345789999999888776432 223467788999999999999999999 555443
No 230
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.98 E-value=0.0098 Score=53.07 Aligned_cols=55 Identities=25% Similarity=0.255 Sum_probs=46.0
Q ss_pred cEEEeeCccCc--cCCccCCCCCcceEEeecCCCCCccChhhhhcCCCccEeecCCccc
Q 003387 524 RVLDLGSLVLI--QYPSGIENLFLLRYLKLNIPSLNSLPSSLLSNLLNLYTLDMPFSYI 580 (824)
Q Consensus 524 r~L~L~~~~i~--~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l 580 (824)
.+++.++..++ .+|..+. .+|++|+|++|.|+.+|..+|..+++|++|+|++|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 47888888887 8887654 3789999999999999988878999999999988744
No 231
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.91 E-value=0.02 Score=60.63 Aligned_cols=105 Identities=17% Similarity=0.013 Sum_probs=61.3
Q ss_pred chhhHHHHHHHHH-cCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCC
Q 003387 161 LDDRMEELLDLLI-EGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPS 239 (824)
Q Consensus 161 r~~~~~~l~~~L~-~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~ 239 (824)
...-...|-.+|. .+=..-+++.|.|.+|+||||||..+... ....=..++|++ ....++.. .+..++..
T Consensus 44 i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid--~E~s~~~~-----~a~~~g~~ 114 (356)
T 1u94_A 44 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFID--AEHALDPI-----YARKLGVD 114 (356)
T ss_dssp ECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEE--SSCCCCHH-----HHHHTTCC
T ss_pred ccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEe--CCCCccHH-----HHHHcCCC
Confidence 3334444555554 33223568999999999999999888763 322223688999 77777643 24455432
Q ss_pred CCc-ccccccCHHHHHHHHHHhcC-CCeEEEEEecCC
Q 003387 240 SRL-SEIMDKNYEMKKIILHEYLM-TKRYLIVIDDVW 274 (824)
Q Consensus 240 ~~~-~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~ 274 (824)
.+. .-.+..+.++....+....+ .+--+||+|.+-
T Consensus 115 ~~~l~i~~~~~~e~~~~~~~~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 115 IDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVA 151 (356)
T ss_dssp GGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEEECGG
T ss_pred hhheeeeCCCCHHHHHHHHHHHHhccCCCEEEEcCHH
Confidence 110 00122344555555544432 344589999984
No 232
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.89 E-value=0.032 Score=59.01 Aligned_cols=104 Identities=21% Similarity=0.071 Sum_probs=62.2
Q ss_pred hhHHHHHHHHH-cCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCC
Q 003387 163 DRMEELLDLLI-EGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSR 241 (824)
Q Consensus 163 ~~~~~l~~~L~-~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~ 241 (824)
.-...+-..|. .+=..-+++.|+|.+|+||||||.++... ....=..++|++ ....++.. .++.++...+
T Consensus 44 TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~--~E~~~~~~-----~a~~lG~~~~ 114 (349)
T 2zr9_A 44 TGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFID--AEHALDPE-----YAKKLGVDTD 114 (349)
T ss_dssp CSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEE--SSCCCCHH-----HHHHTTCCGG
T ss_pred cCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEE--CCCCcCHH-----HHHHcCCCHH
Confidence 33344445554 33233568999999999999999988762 322224678998 77666653 2455553211
Q ss_pred c-ccccccCHHHHHHHHHHhcCC-CeEEEEEecCCC
Q 003387 242 L-SEIMDKNYEMKKIILHEYLMT-KRYLIVIDDVWS 275 (824)
Q Consensus 242 ~-~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~ 275 (824)
. .-....+.++....+....+. +.-+||+|.+-.
T Consensus 115 ~l~i~~~~~~e~~l~~~~~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 115 SLLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp GCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECGGG
T ss_pred HeEEecCCCHHHHHHHHHHHHhcCCCCEEEEcChHh
Confidence 0 001233455665555555543 456999999853
No 233
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.81 E-value=0.0097 Score=61.99 Aligned_cols=52 Identities=10% Similarity=0.181 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHcCCC-CeEEEEEEcCCCChHHHHHHHHhCCcccc-CCCceeEEEE
Q 003387 163 DRMEELLDLLIEGPP-QLSVVAILDSIGLDKTAFAGEAYNSSYVK-HYFDCHAWIT 216 (824)
Q Consensus 163 ~~~~~l~~~L~~~~~-~~~vi~I~G~gGvGKTtLa~~v~~~~~~~-~~F~~~~wv~ 216 (824)
...+.+.+++..... ....+.|+|..|+|||+||+++++ ... ..-..+++++
T Consensus 135 ~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~--~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 135 EAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH--ELSEKKGVSTTLLH 188 (308)
T ss_dssp HHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHH--HHHHHSCCCEEEEE
T ss_pred HHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHH--HHHHhcCCcEEEEE
Confidence 344455566664322 246788999999999999999998 443 3333455666
No 234
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.80 E-value=0.0038 Score=66.21 Aligned_cols=47 Identities=17% Similarity=0.154 Sum_probs=39.5
Q ss_pred CCCceechhhHHHHHHHHHcC---CCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDLLIEG---PPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|++..++.+..++... ......|-|+|+.|+||||+|+.+.+
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 467999999999999988752 33455689999999999999999987
No 235
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.74 E-value=0.027 Score=55.68 Aligned_cols=117 Identities=17% Similarity=-0.008 Sum_probs=62.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCcc-----c---------
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLS-----E--------- 244 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~-----~--------- 244 (824)
-.+++|+|..|+|||||++.+... ....=..++|+. ... ...++...+. .++...... .
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~--~~~~~~~v~~~~--~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 95 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAK--GLRDGDPCIYVT--TEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEK 95 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHH--HHHHTCCEEEEE--SSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC---
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH--HHHCCCeEEEEE--ccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEecccccc
Confidence 368999999999999999998862 221112456666 332 3444444332 333211000 0
Q ss_pred -----ccccCHHHHHHHHHHhcC---CCeEEEEEecCC-----ChhhHHHHHhhCCC--CCCCcEEEEEechH
Q 003387 245 -----IMDKNYEMKKIILHEYLM---TKRYLIVIDDVW-----SIDMWDVIQEILPD--NQNGSRVLITLTDI 302 (824)
Q Consensus 245 -----~~~~~~~~~~~~l~~~L~---~kr~LlVlDdv~-----~~~~~~~l~~~~~~--~~~gs~ilvTtR~~ 302 (824)
....+..+....+.+.+. -+..+||+|... +......+...+.. ...|..||+||...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 96 EDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp -CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred CceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 011144555555555543 234599999986 22222333222221 12467888888765
No 236
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.73 E-value=0.0095 Score=69.65 Aligned_cols=97 Identities=13% Similarity=0.116 Sum_probs=61.1
Q ss_pred CCCCCceechhhHHHHHHHHHc----C-------CCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCC
Q 003387 153 SKSRDTVGLDDRMEELLDLLIE----G-------PPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSN 221 (824)
Q Consensus 153 ~~~~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~ 221 (824)
+.-+++.|.++.+++|.+++.- . -...+-|-++|++|.|||+||+++.+ +...+| +.|. .+
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~--elg~~~---~~v~--~~- 272 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLIN--GP- 272 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHT--TTTCEE---EEEE--HH-
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCeE---EEEE--hH-
Confidence 4446788999999888877542 1 13457789999999999999999999 444333 3343 11
Q ss_pred CCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHHhcCCCeEEEEEecCCC
Q 003387 222 EYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWS 275 (824)
Q Consensus 222 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 275 (824)
++. .. ........+...+....+....+|++|+++.
T Consensus 273 ---------~l~---sk------~~gese~~lr~lF~~A~~~~PsIIfIDEiDa 308 (806)
T 3cf2_A 273 ---------EIM---SK------LAGESESNLRKAFEEAEKNAPAIIFIDELDA 308 (806)
T ss_dssp ---------HHH---SS------CTTHHHHHHHHHHHHHTTSCSEEEEEESGGG
T ss_pred ---------Hhh---cc------cchHHHHHHHHHHHHHHHcCCeEEEEehhcc
Confidence 111 11 0111223333344444456789999999964
No 237
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.71 E-value=0.022 Score=56.80 Aligned_cols=94 Identities=11% Similarity=0.075 Sum_probs=54.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccC----CCceeEEEECCCCCCCCHHHHHHHHHHHhCCCC-----CcccccccC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKH----YFDCHAWITEPYSNEYDADQILDIVIKFLMPSS-----RLSEIMDKN 249 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~----~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~ 249 (824)
-.++.|+|.+|+|||||++.+........ .-..++|++ ....++..++. ++++.++... ...-....+
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~--~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID--TEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE--SSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE--CCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCC
Confidence 46999999999999999999876211111 135788998 66555555443 3445554321 000011122
Q ss_pred HHH---HHHHHHHhcC-CCeEEEEEecCCC
Q 003387 250 YEM---KKIILHEYLM-TKRYLIVIDDVWS 275 (824)
Q Consensus 250 ~~~---~~~~l~~~L~-~kr~LlVlDdv~~ 275 (824)
..+ ....+.+.+. .+.-+||+|.+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 222 2333555553 4677999999864
No 238
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.71 E-value=0.049 Score=57.88 Aligned_cols=105 Identities=18% Similarity=0.064 Sum_probs=63.3
Q ss_pred chhhHHHHHHHHH-cCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCC
Q 003387 161 LDDRMEELLDLLI-EGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPS 239 (824)
Q Consensus 161 r~~~~~~l~~~L~-~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~ 239 (824)
...-...|-.+|. .+=..-+++-|+|.+|+||||||..+... ....=..++|++ ....++.. .++.++..
T Consensus 55 i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~--~E~s~~~~-----~a~~~g~d 125 (366)
T 1xp8_A 55 VSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFID--AEHALDPV-----YARALGVN 125 (366)
T ss_dssp ECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEE--SSCCCCHH-----HHHHTTCC
T ss_pred ecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEE--CCCChhHH-----HHHHcCCC
Confidence 3333444555554 23223458888999999999999888763 322224788999 77766654 24455442
Q ss_pred CC-cccccccCHHHHHHHHHHhcCC-CeEEEEEecCC
Q 003387 240 SR-LSEIMDKNYEMKKIILHEYLMT-KRYLIVIDDVW 274 (824)
Q Consensus 240 ~~-~~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~ 274 (824)
.. ..-....+.++....+.+.++. +--+||+|.+-
T Consensus 126 ~~~l~i~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 126 TDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp GGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECTT
T ss_pred HHHceeecCCcHHHHHHHHHHHHhcCCCCEEEEeChH
Confidence 11 0001233556666667666654 44589999985
No 239
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.67 E-value=0.005 Score=63.73 Aligned_cols=29 Identities=10% Similarity=0.040 Sum_probs=24.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCccccCC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYNSSYVKHY 208 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~ 208 (824)
..+.+.++|++|+|||+||+.+++ .....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~--~l~~~ 63 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR--KMGIN 63 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH--HHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HhCCC
Confidence 456788999999999999999998 55433
No 240
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.66 E-value=0.0048 Score=73.17 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=37.8
Q ss_pred CCceechhhHHHHHHHHHcCC-------CCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIEGP-------PQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..++|.+..++.+.+.+.... .....+-++|+.|+|||++|+.+.+
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~ 543 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 543 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999988886421 2234799999999999999999988
No 241
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.65 E-value=0.015 Score=64.28 Aligned_cols=47 Identities=21% Similarity=0.105 Sum_probs=36.5
Q ss_pred CCCceechhhHHHHHH---HHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLD---LLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~---~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.++++|.+..++.+.. ++..+....+-+-++|++|+|||++|+.+.+
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~ 85 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQ 85 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHH
Confidence 4689999998876544 4444443345688999999999999999998
No 242
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.63 E-value=0.011 Score=63.47 Aligned_cols=55 Identities=22% Similarity=0.238 Sum_probs=41.3
Q ss_pred CCCCCceechhhHHHHHHHHHc-----------CCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCC
Q 003387 153 SKSRDTVGLDDRMEELLDLLIE-----------GPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYF 209 (824)
Q Consensus 153 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F 209 (824)
+.-+++.|.++.+++|.+.+.. +-...+=|-++|++|.|||.||+++.+ +....|
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~--e~~~~f 244 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN--QTSATF 244 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH--HHTCEE
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH--HhCCCE
Confidence 3345688999999888876642 123457788999999999999999999 554443
No 243
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.62 E-value=0.0078 Score=65.24 Aligned_cols=55 Identities=24% Similarity=0.295 Sum_probs=41.5
Q ss_pred CCCCCceechhhHHHHHHHHHc-----------CCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCC
Q 003387 153 SKSRDTVGLDDRMEELLDLLIE-----------GPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYF 209 (824)
Q Consensus 153 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F 209 (824)
+.-+++.|.++.+++|.+.+.. +-...+=|-++|++|.|||+||+++.+ +....|
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~--e~~~~f 243 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA--QTNATF 243 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH--HhCCCE
Confidence 3446789999999988876432 123467788999999999999999999 554433
No 244
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.60 E-value=0.015 Score=69.04 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=39.8
Q ss_pred CCCCCceechhhHHHHHHHHHc-----------CCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 153 SKSRDTVGLDDRMEELLDLLIE-----------GPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 153 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
+.-++++|.+..+++|.+++.. +-.....|.|+|..|+||||||+.+.+
T Consensus 201 v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 3446799999999999888764 122346789999999999999999988
No 245
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.60 E-value=0.029 Score=59.36 Aligned_cols=105 Identities=11% Similarity=0.057 Sum_probs=60.1
Q ss_pred HHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccC----CCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCC--
Q 003387 168 LLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKH----YFDCHAWITEPYSNEYDADQILDIVIKFLMPSSR-- 241 (824)
Q Consensus 168 l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~----~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~-- 241 (824)
+-.+|..+=..-.++.|+|.+|+||||||..+........ .=..++|++ ....++..++.+ ++..++....
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~--~E~~~~~~~l~~-~~~~~g~~~~~~ 187 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID--TENTFRPDRLRD-IADRFNVDHDAV 187 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE--SSSCCCHHHHHH-HHHHTTCCHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE--CCCCCCHHHHHH-HHHHcCCCHHHH
Confidence 4444444434467999999999999999998876322211 224688999 777778776654 4455543210
Q ss_pred ---cccccccCH---HHHHHHHHHhcC---CCeEEEEEecCCC
Q 003387 242 ---LSEIMDKNY---EMKKIILHEYLM---TKRYLIVIDDVWS 275 (824)
Q Consensus 242 ---~~~~~~~~~---~~~~~~l~~~L~---~kr~LlVlDdv~~ 275 (824)
..-....+. .++...+.+.++ .+--+||+|.+-.
T Consensus 188 l~~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 188 LDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp HHTEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HhceeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 000011111 223333444443 4566888998853
No 246
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.59 E-value=0.019 Score=58.72 Aligned_cols=47 Identities=26% Similarity=0.216 Sum_probs=33.1
Q ss_pred CCCCceechhhHHHHHHHHHc---C---------CCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 154 KSRDTVGLDDRMEELLDLLIE---G---------PPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 154 ~~~~~vGr~~~~~~l~~~L~~---~---------~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.-.++.|.++.+++|.+.+.. . ..... +.++|+.|.||||||+.+.+
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHH
Confidence 346788998888888765431 1 11123 99999999999999999998
No 247
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.56 E-value=0.019 Score=60.32 Aligned_cols=105 Identities=20% Similarity=0.140 Sum_probs=60.5
Q ss_pred HHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCC----CceeEEEECCCCCCCCHHHHHHHHHHHhCCCCC--
Q 003387 168 LLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHY----FDCHAWITEPYSNEYDADQILDIVIKFLMPSSR-- 241 (824)
Q Consensus 168 l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~----F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~-- 241 (824)
+-.+|..+=..-.++.|+|.+|+||||||..+......... =..++|++ ....++..++.+ +++.++....
T Consensus 96 LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~--~e~~~~~~~l~~-~~~~~g~~~~~~ 172 (324)
T 2z43_A 96 LDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID--TEGTFRWERIEN-MAKALGLDIDNV 172 (324)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE--SSSCCCHHHHHH-HHHHTTCCHHHH
T ss_pred HHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE--CCCCCCHHHHHH-HHHHhCCCHHHH
Confidence 33344333223468999999999999999988763211110 24688999 777777777654 4555544210
Q ss_pred ---cccccccCHH---HHHHHHHHhcC--CCeEEEEEecCCC
Q 003387 242 ---LSEIMDKNYE---MKKIILHEYLM--TKRYLIVIDDVWS 275 (824)
Q Consensus 242 ---~~~~~~~~~~---~~~~~l~~~L~--~kr~LlVlDdv~~ 275 (824)
..-....+.+ ++...+.+.++ .+--+||+|.+..
T Consensus 173 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 173 MNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHTEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred hccEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 0001112222 23445555553 4566888888853
No 248
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.44 E-value=0.063 Score=55.08 Aligned_cols=87 Identities=6% Similarity=-0.000 Sum_probs=55.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCCccccCC--CceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCc-ccccccCHHHH-HHH
Q 003387 181 VVAILDSIGLDKTAFAGEAYNSSYVKHY--FDCHAWITEPYSNEYDADQILDIVIKFLMPSSRL-SEIMDKNYEMK-KII 256 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~~~~~~~~--F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~-~~~ 256 (824)
++-|+|.+|+||||||.++.. ..... =..++||+ ..+.++.. .+++++...+. .-....+.++. ...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~--~~~~~g~g~~vlyId--~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i 100 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVS--SYMRQYPDAVCLFYD--SEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDM 100 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHH--HHHHHCTTCEEEEEE--SSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEe--ccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHH
Confidence 789999999999999988766 33322 24688999 77777754 36777764221 01233445555 333
Q ss_pred HHHh--c-CCCeEEEEEecCCCh
Q 003387 257 LHEY--L-MTKRYLIVIDDVWSI 276 (824)
Q Consensus 257 l~~~--L-~~kr~LlVlDdv~~~ 276 (824)
+... + +++.-+||+|-|-..
T Consensus 101 ~~~l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 101 VNQLDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHHHHTCCTTCCEEEEEECSTTC
T ss_pred HHHHHHhhccCceEEEEeccccc
Confidence 3332 3 457789999998643
No 249
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.36 E-value=0.023 Score=59.66 Aligned_cols=105 Identities=15% Similarity=0.123 Sum_probs=61.7
Q ss_pred HHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccC---------CC-----ceeEEEECCCCCCCCHHHHHHHH
Q 003387 167 ELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKH---------YF-----DCHAWITEPYSNEYDADQILDIV 232 (824)
Q Consensus 167 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~~~vs~~~~~~~~~~~i 232 (824)
.+-.+|..+=..-.++.|+|.+|+||||||..+..+..... .. ..++|++ ....++..++.+ +
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~--~e~~~~~~~l~~-~ 162 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYID--TEGTFRPERIMQ-M 162 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEE--SSSCCCHHHHHH-H
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEE--CCCCCCHHHHHH-H
Confidence 34444433323457999999999999999988875321111 11 4788999 887788777664 4
Q ss_pred HHHhCCCCC-----cccccccCHH---HHHHHHHHhcC--CCeEEEEEecCC
Q 003387 233 IKFLMPSSR-----LSEIMDKNYE---MKKIILHEYLM--TKRYLIVIDDVW 274 (824)
Q Consensus 233 ~~~l~~~~~-----~~~~~~~~~~---~~~~~l~~~L~--~kr~LlVlDdv~ 274 (824)
++.++.... ..-....+.+ ++...+.+.++ .+--+||+|.+-
T Consensus 163 ~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 163 AEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp HHHHTCCHHHHHHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred HHHcCCCHHHHhcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 555554210 0001112223 23445555554 345688999885
No 250
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.25 E-value=0.017 Score=56.04 Aligned_cols=41 Identities=22% Similarity=0.178 Sum_probs=32.9
Q ss_pred chhhHHHHHHHHHcC-CCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 161 LDDRMEELLDLLIEG-PPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 161 r~~~~~~l~~~L~~~-~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
|+..++.+.+.+... .....+|+|+|..|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 455677788877753 23568999999999999999999876
No 251
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.18 E-value=0.011 Score=57.74 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=28.0
Q ss_pred HHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 165 MEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 165 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.++|.+.+......-.+|+|+|..|.|||||++.+..
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444454443334578999999999999999999887
No 252
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.16 E-value=0.0088 Score=63.22 Aligned_cols=46 Identities=22% Similarity=0.194 Sum_probs=36.2
Q ss_pred CCceechhhHHHHHHHHHcC---CCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIEG---PPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
+.++|.+..++.+...+..+ ......+.++|+.|+||||||+.+.+
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 46788887777776666543 22356799999999999999999998
No 253
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.06 E-value=0.027 Score=62.38 Aligned_cols=50 Identities=20% Similarity=0.252 Sum_probs=36.5
Q ss_pred CCCCCCceechhhHHHHHHHHH---cCC-------CCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 152 SSKSRDTVGLDDRMEELLDLLI---EGP-------PQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 152 ~~~~~~~vGr~~~~~~l~~~L~---~~~-------~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+.-++++|.++.++++.+... ... .-.+=+.|+|..|.||||||+.+.+
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3445689999988877766543 210 0122389999999999999999998
No 254
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.01 E-value=0.027 Score=63.56 Aligned_cols=46 Identities=20% Similarity=0.306 Sum_probs=35.8
Q ss_pred CCceechhhHHHHHHHHHc----CCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIE----GPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+++|.++-++.+.+.+.- ......++.++|++|+||||||+.+.+
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4578988888877665432 122456899999999999999999988
No 255
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.99 E-value=0.024 Score=54.20 Aligned_cols=88 Identities=7% Similarity=0.040 Sum_probs=47.9
Q ss_pred hhHhhhcccCcccEEEeeCc-cCc-----cCCccCCCCCcceEEeecCCCCC-----ccChhhhhcCCCccEeecCCccc
Q 003387 512 DWEKFCGMFKLLRVLDLGSL-VLI-----QYPSGIENLFLLRYLKLNIPSLN-----SLPSSLLSNLLNLYTLDMPFSYI 580 (824)
Q Consensus 512 ~~~~~~~~~~~Lr~L~L~~~-~i~-----~lp~~i~~l~~Lr~L~L~~~~i~-----~lp~~i~~~L~~L~~L~L~~~~l 580 (824)
.+...+..-+.|+.|+|+++ .|. .+-+.+..-.+|+.|+|++|.+. .+-..+ ..-+.|++|+|++|.|
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL-~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELI-ETSPSLRVLNVESNFL 110 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHH-HHCSSCCEEECCSSBC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHH-hcCCccCeEecCCCcC
Confidence 34455566677777887764 553 33344455566777777777665 233333 4445566666666655
Q ss_pred cc-----cchhhhccccCceecCCC
Q 003387 581 DH-----TADEFWKMNKLRHLNFGS 600 (824)
Q Consensus 581 ~~-----lp~~i~~L~~L~~L~L~~ 600 (824)
.. +-+.+..-+.|++|+|++
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred CHHHHHHHHHHHhhCCceeEEECCC
Confidence 42 222333334455555543
No 256
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.97 E-value=0.02 Score=54.48 Aligned_cols=119 Identities=10% Similarity=0.001 Sum_probs=61.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCC---CCCHHHHHHHHHHHhC--CCC---Cccc--ccccC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSN---EYDADQILDIVIKFLM--PSS---RLSE--IMDKN 249 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~---~~~~~~~~~~i~~~l~--~~~---~~~~--~~~~~ 249 (824)
..|-|++-.|.||||.|-.+.- +...+=..+.++. ..+ .+...+++..+.-.+. +.. ..+. .+...
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQ--F~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQ--FIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEE--SSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEE--eeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHH
Confidence 4566677777999999976655 3333322445554 322 3344444444310000 000 0000 01112
Q ss_pred HHHHHHHHHHhcCCCeE-EEEEecCCCh-----hhHHHHHhhCCCCCCCcEEEEEechH
Q 003387 250 YEMKKIILHEYLMTKRY-LIVIDDVWSI-----DMWDVIQEILPDNQNGSRVLITLTDI 302 (824)
Q Consensus 250 ~~~~~~~l~~~L~~kr~-LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~ilvTtR~~ 302 (824)
........++.+.+.+| |||||++-.. ...+++...+.......-||+|+|..
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 24445566777766555 9999999432 23344444443444456799999975
No 257
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.86 E-value=0.024 Score=68.05 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=36.9
Q ss_pred CceechhhHHHHHHHHHcC-------CCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 157 DTVGLDDRMEELLDLLIEG-------PPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 157 ~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.++|.+..++.+...+... ......+.|+|..|+|||++|+.+.+
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999888887642 12246889999999999999999988
No 258
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.83 E-value=0.079 Score=55.36 Aligned_cols=24 Identities=21% Similarity=0.146 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
...+++|+|..|+||||+++.+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999887
No 259
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.81 E-value=0.026 Score=58.06 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=23.6
Q ss_pred CCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 175 GPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 175 ~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
......+|+|+|..|+||||||+.+..
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345678999999999999999998877
No 260
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.80 E-value=0.013 Score=55.03 Aligned_cols=108 Identities=15% Similarity=0.087 Sum_probs=54.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCc-cc-----ccccCHHHH
Q 003387 180 SVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRL-SE-----IMDKNYEMK 253 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~-~~-----~~~~~~~~~ 253 (824)
.+|.|+|+.|+||||+|+.+ . +.. | .+++ ..++.++....-+..... .. .........
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~--~~g--~---~~i~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-K--ERG--A---KVIV--------MSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVV 65 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-H--HTT--C---EEEE--------HHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHH
T ss_pred cEEEEECCCCCCHHHHHHHH-H--HCC--C---cEEE--------HhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHH
Confidence 47999999999999999999 4 322 1 1333 233444433332210000 00 000011223
Q ss_pred HHHHHHhc-CCCeEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEechHHHHh
Q 003387 254 KIILHEYL-MTKRYLIVIDDVWSIDMWDVIQEILPDNQNGSRVLITLTDIRIII 306 (824)
Q Consensus 254 ~~~l~~~L-~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~ 306 (824)
...+.+.+ ....-.+|+|++....+++.+...+. ....+|.-..+.+++.
T Consensus 66 ~~~~~~~l~~~~~~~vi~dg~~~~~~~~~l~~~~~---~~~~~i~l~~~~~~~~ 116 (179)
T 3lw7_A 66 ARLCVEELGTSNHDLVVFDGVRSLAEVEEFKRLLG---DSVYIVAVHSPPKIRY 116 (179)
T ss_dssp HHHHHHHHCSCCCSCEEEECCCCHHHHHHHHHHHC---SCEEEEEEECCHHHHH
T ss_pred HHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHhC---CCcEEEEEECCHHHHH
Confidence 34455555 23344578899966666666654433 2334554444444443
No 261
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.79 E-value=0.012 Score=61.42 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=37.1
Q ss_pred CCceechhhHHHHHHHHHcC------------CCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIEG------------PPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..++|.+..++.+...+... .....-+-++|.+|+|||++|+.+.+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999998887641 11245677999999999999999988
No 262
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.79 E-value=0.028 Score=50.03 Aligned_cols=55 Identities=15% Similarity=0.177 Sum_probs=46.8
Q ss_pred eEEeecCCCCC--ccChhhhhcCCCccEeecCCccccccchh-hhccccCceecCCCccCC
Q 003387 547 RYLKLNIPSLN--SLPSSLLSNLLNLYTLDMPFSYIDHTADE-FWKMNKLRHLNFGSITLP 604 (824)
Q Consensus 547 r~L~L~~~~i~--~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~~~ 604 (824)
..++.++.+++ .+|..+ -.+|++|+|++|.|+.+|.. |..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888888988 999765 45799999999999999876 678999999999998764
No 263
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.58 E-value=0.017 Score=55.25 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+|+|+|+.|+|||||++.+..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999988
No 264
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.55 E-value=0.2 Score=50.50 Aligned_cols=22 Identities=27% Similarity=0.232 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+++|+|..|.|||||.+.+..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999986
No 265
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.53 E-value=0.018 Score=59.95 Aligned_cols=37 Identities=14% Similarity=0.003 Sum_probs=26.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEE
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIT 216 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~ 216 (824)
+.+||+|.|-|||||||.|..+.- -....=..+.-|+
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~--aLA~~GkkVllID 83 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSA--AFSILGKRVLQIG 83 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEE
T ss_pred CceEEEEECCCccCHHHHHHHHHH--HHHHCCCeEEEEe
Confidence 589999999999999999876654 2322222455555
No 266
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.43 E-value=0.015 Score=54.91 Aligned_cols=22 Identities=5% Similarity=0.030 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+|.|+|+.|+||||+|+.+.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 267
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.34 E-value=0.018 Score=55.03 Aligned_cols=110 Identities=12% Similarity=-0.001 Sum_probs=75.1
Q ss_pred CCceeEeeccCC-CCCCCCcchhHhhhcccCcccEEEeeCccCc-----cCCccCCCCCcceEEeecCCCCC-----ccC
Q 003387 492 DSQLHSLLCCSP-ETRHLDPIDWEKFCGMFKLLRVLDLGSLVLI-----QYPSGIENLFLLRYLKLNIPSLN-----SLP 560 (824)
Q Consensus 492 ~~~Lr~L~l~~~-~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~-----~lp~~i~~l~~Lr~L~L~~~~i~-----~lp 560 (824)
.+.|+.|.+.++ .........+...+..-+.|+.|+|++|.+. .+.+.+..-+.|++|+|++|.|. .+-
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 567888888764 3321011245567777889999999999886 44455556678999999999987 333
Q ss_pred hhhhhcCCCccEeecCCcc---cc-----ccchhhhccccCceecCCCcc
Q 003387 561 SSLLSNLLNLYTLDMPFSY---ID-----HTADEFWKMNKLRHLNFGSIT 602 (824)
Q Consensus 561 ~~i~~~L~~L~~L~L~~~~---l~-----~lp~~i~~L~~L~~L~L~~~~ 602 (824)
..+ ..-+.|++|+|+++. +. .+...+..-+.|+.|+++.+.
T Consensus 120 ~aL-~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 120 RST-LVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHT-TTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHH-hhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 444 555679999998653 23 234446667788999886554
No 268
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.29 E-value=0.065 Score=58.36 Aligned_cols=104 Identities=13% Similarity=0.154 Sum_probs=62.4
Q ss_pred HHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccc-cCCCceeEEEECCCCCCCC-HHHHHHHHHHHhCCC------
Q 003387 168 LLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYV-KHYFDCHAWITEPYSNEYD-ADQILDIVIKFLMPS------ 239 (824)
Q Consensus 168 l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~-~~~F~~~~wv~~~vs~~~~-~~~~~~~i~~~l~~~------ 239 (824)
+++.|..=. .-.-++|.|..|+|||+|++.+.+ .+ +.+-+.++++- +.+..+ +.++..++...=...
T Consensus 155 vID~l~pig-kGqr~gIfgg~GvGKT~L~~~l~~--~~a~~~~~v~V~~~--iGER~rEv~e~~~~~~~~~~l~~~~l~~ 229 (498)
T 1fx0_B 155 VVNLLAPYR-RGGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGVSVFGG--VGERTREGNDLYMEMKESGVINEQNIAE 229 (498)
T ss_dssp THHHHSCCC-TTCCEEEEECSSSSHHHHHHHHHH--HTTTTCSSCEEEEE--ESCCSHHHHHHHHHHHHTTSSCSSTTCC
T ss_pred Eeeeecccc-cCCeEEeecCCCCCchHHHHHHHH--HHHhhCCCEEEEEE--cccCcHHHHHHHHhhhcccccccccccc
Confidence 455554321 234689999999999999998877 33 23446778887 777654 446666766531111
Q ss_pred ---------CCcccccccCHHHHHHHHHHhcC---CCeEEEEEecCCCh
Q 003387 240 ---------SRLSEIMDKNYEMKKIILHEYLM---TKRYLIVIDDVWSI 276 (824)
Q Consensus 240 ---------~~~~~~~~~~~~~~~~~l~~~L~---~kr~LlVlDdv~~~ 276 (824)
.+.|.....-.......+.++++ ++.+||++||+-.-
T Consensus 230 ~rtvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR~ 278 (498)
T 1fx0_B 230 SKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRF 278 (498)
T ss_dssp CCEEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHHH
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 01111111122333445556554 58999999999643
No 269
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.29 E-value=0.02 Score=53.72 Aligned_cols=22 Identities=9% Similarity=0.025 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 270
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.22 E-value=0.024 Score=60.56 Aligned_cols=45 Identities=16% Similarity=0.110 Sum_probs=35.7
Q ss_pred CceechhhHHHHHHHHHc-------------CCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 157 DTVGLDDRMEELLDLLIE-------------GPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 157 ~~vGr~~~~~~l~~~L~~-------------~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.++|.+..++.+...+.. .......|.++|++|+|||++|+.+.+
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 478999999988887731 111345788999999999999999998
No 271
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.21 E-value=0.027 Score=56.73 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=33.4
Q ss_pred CCCceechhhHHHHHHHHHc--C---------CCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDLLIE--G---------PPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~--~---------~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-++++|.+..+.++.+.... . .-... +.|+|..|+||||||+.+.+
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHH
Confidence 45788988777766654431 1 00122 89999999999999999998
No 272
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.19 E-value=0.021 Score=54.15 Aligned_cols=23 Identities=9% Similarity=0.224 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-++++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999987
No 273
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.17 E-value=0.11 Score=55.91 Aligned_cols=107 Identities=12% Similarity=0.077 Sum_probs=58.0
Q ss_pred HHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccc----cCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCC
Q 003387 166 EELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYV----KHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSR 241 (824)
Q Consensus 166 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~----~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~ 241 (824)
..+-++|..+=..-.++.|+|..|+|||||+..+.-.... ...-..++|++ ....++..++. .+++.++....
T Consensus 165 ~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid--~E~~~~~~rl~-~~a~~~gl~~~ 241 (400)
T 3lda_A 165 KNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID--TEGTFRPVRLV-SIAQRFGLDPD 241 (400)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE--SSSCCCHHHHH-HHHHHTTCCHH
T ss_pred hhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEe--CCCccCHHHHH-HHHHHcCCChH
Confidence 3344444444233569999999999999999966421111 11234688998 66666665543 36666654210
Q ss_pred -----cccccccCHH---HHHHHHHHhcC-CCeEEEEEecCCC
Q 003387 242 -----LSEIMDKNYE---MKKIILHEYLM-TKRYLIVIDDVWS 275 (824)
Q Consensus 242 -----~~~~~~~~~~---~~~~~l~~~L~-~kr~LlVlDdv~~ 275 (824)
..-....+.. +....+.+.+. .+.-+||+|.+-.
T Consensus 242 ~vleni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 242 DALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred hHhhcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 0001111222 22233333332 3567889998743
No 274
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.17 E-value=0.061 Score=56.93 Aligned_cols=104 Identities=13% Similarity=0.139 Sum_probs=57.1
Q ss_pred HHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCC----ceeEEEECCCCCCCCHHHHHHHHHHHhCCCCC----
Q 003387 170 DLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYF----DCHAWITEPYSNEYDADQILDIVIKFLMPSSR---- 241 (824)
Q Consensus 170 ~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F----~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~---- 241 (824)
++|..+=..-.++.|+|..|+|||||+..+.......... ..++|++ ....+...++ ..+++..+....
T Consensus 122 ~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~--~e~~~~~~~i-~~i~q~~~~~~~~v~~ 198 (349)
T 1pzn_A 122 KLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID--TENTFRPERI-REIAQNRGLDPDEVLK 198 (349)
T ss_dssp HHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEE--SSSCCCHHHH-HHHHHTTTCCHHHHGG
T ss_pred HHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEe--CCCCCCHHHH-HHHHHHcCCCHHHHhh
Confidence 3343332346899999999999999999987732111111 2458998 5554544443 334444432110
Q ss_pred ---ccc-ccccCHHHHHHHHHHhcC------CCeEEEEEecCCCh
Q 003387 242 ---LSE-IMDKNYEMKKIILHEYLM------TKRYLIVIDDVWSI 276 (824)
Q Consensus 242 ---~~~-~~~~~~~~~~~~l~~~L~------~kr~LlVlDdv~~~ 276 (824)
... .......++...+...++ .+.=+||+|.+-..
T Consensus 199 ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 199 HIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp GEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred CEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 000 011112333444455553 46779999998654
No 275
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.09 E-value=0.049 Score=59.07 Aligned_cols=105 Identities=14% Similarity=0.201 Sum_probs=59.4
Q ss_pred HHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCC-HHHHHHHHHHHhCCC------
Q 003387 167 ELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYD-ADQILDIVIKFLMPS------ 239 (824)
Q Consensus 167 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~-~~~~~~~i~~~l~~~------ 239 (824)
++++.|..=. .-.-++|+|..|+|||+|++.+.++. .+.+-+.++++- +.+..+ +.++.+++.+.=...
T Consensus 142 r~ID~l~pig-kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~--iGER~rEv~e~~~~~~~~~~l~~~~~~~ 217 (482)
T 2ck3_D 142 KVVDLLAPYA-KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAG--VGERTREGNDLYHEMIESGVINLKDATS 217 (482)
T ss_dssp HHHHHHSCEE-TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEE--ESCCHHHHHHHHHHHHHHTSSCSSSSCC
T ss_pred EEEecccccc-cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEE--CCCcchHHHHHHHHhhhccccccccCCc
Confidence 3555554311 13478999999999999999887731 123345667776 776653 346666766542111
Q ss_pred C--------CcccccccCHHHHHHHHHHhc---CCCeEEEEEecCCC
Q 003387 240 S--------RLSEIMDKNYEMKKIILHEYL---MTKRYLIVIDDVWS 275 (824)
Q Consensus 240 ~--------~~~~~~~~~~~~~~~~l~~~L---~~kr~LlVlDdv~~ 275 (824)
. +.|.....-.......+.+++ +++.+||++||+-.
T Consensus 218 rtvvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 218 KVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 0 000000001112223333443 47999999999954
No 276
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.04 E-value=0.027 Score=53.23 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+|.|+|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999986
No 277
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.03 E-value=0.023 Score=54.86 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.++|.|+|+.|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 278
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.99 E-value=0.092 Score=54.08 Aligned_cols=36 Identities=19% Similarity=0.107 Sum_probs=26.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEE
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIT 216 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~ 216 (824)
..+|+|+|.+|+||||++..+.. .....=..+.+++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~--~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY--FYKKKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH--HHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEe
Confidence 67999999999999999998876 3322223455665
No 279
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.96 E-value=0.073 Score=56.03 Aligned_cols=101 Identities=11% Similarity=-0.014 Sum_probs=51.8
Q ss_pred HHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCcccc---CCCceeEEEECCCCCCCCHHHHHHHHHHHhCC-----
Q 003387 167 ELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVK---HYFDCHAWITEPYSNEYDADQILDIVIKFLMP----- 238 (824)
Q Consensus 167 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~---~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~----- 238 (824)
++++.+..-. .-..++|+|..|+|||||++.+.+ .+. ..++++ ++- +.+....- .++.+.+..
T Consensus 163 raID~~~pi~-rGQr~~IvG~sG~GKTtLl~~Iar--~i~~~~~~v~~I-~~l--IGER~~Ev---~~~~~~~~~~vV~a 233 (422)
T 3ice_A 163 RVLDLASPIG-RGQRGLIVAPPKAGKTMLLQNIAQ--SIAYNHPDCVLM-VLL--IDERPEEV---TEMQRLVKGEVVAS 233 (422)
T ss_dssp HHHHHHSCCB-TTCEEEEECCSSSSHHHHHHHHHH--HHHHHCTTSEEE-EEE--ESSCHHHH---HHHHTTCSSEEEEE
T ss_pred eeeeeeeeec-CCcEEEEecCCCCChhHHHHHHHH--HHhhcCCCeeEE-EEE--ecCChHHH---HHHHHHhCeEEEEe
Confidence 3445544322 235899999999999999998877 332 233333 455 55543222 223333311
Q ss_pred CCCcccccccCHHHHHHHHHHhc--CCCeEEEEEecCCCh
Q 003387 239 SSRLSEIMDKNYEMKKIILHEYL--MTKRYLIVIDDVWSI 276 (824)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~ 276 (824)
..+.|...........-.+.+++ +++.+||++||+-..
T Consensus 234 tadep~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~ 273 (422)
T 3ice_A 234 TFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRL 273 (422)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHH
Confidence 11101000000111112223333 589999999999643
No 280
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.92 E-value=0.034 Score=58.56 Aligned_cols=42 Identities=21% Similarity=0.166 Sum_probs=36.3
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..++|++..++.+...+..+. -+-++|.+|+|||+||+.+.+
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~----~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG----HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC----CEEEESCCCHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcCC----eEEEECCCCCcHHHHHHHHHH
Confidence 468899999999888887643 578899999999999999988
No 281
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.92 E-value=0.095 Score=53.96 Aligned_cols=86 Identities=14% Similarity=0.047 Sum_probs=45.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCccccC-CCceeEEEECCCC-CCCCHHHHHHHHHHHhCCCCCcccccccCHHHHHH
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYNSSYVKH-YFDCHAWITEPYS-NEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKI 255 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~-~F~~~~wv~~~vs-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 255 (824)
..++|+|+|.+|+||||++..+.. .... .=..+..++ .. ......+.+....+..+... ....+...+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~--~l~~~~G~~V~lv~--~D~~r~~a~eqL~~~~~~~gl~~----~~~~~~~~l~~ 175 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA--ISMLEKHKKIAFIT--TDTYRIAAVEQLKTYAELLQAPL----EVCYTKEEFQQ 175 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCCEEEEE--CCCSSTTHHHHHHHHHTTTTCCC----CBCSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHHHhcCCEEEEEe--cCcccchHHHHHHHHHHhcCCCe----EecCCHHHHHH
Confidence 357999999999999999999876 3321 112455565 22 22233333333333332211 11123344444
Q ss_pred HHHHhcCCCeEEEEEecC
Q 003387 256 ILHEYLMTKRYLIVIDDV 273 (824)
Q Consensus 256 ~l~~~L~~kr~LlVlDdv 273 (824)
.+.. + .+.=++++|-.
T Consensus 176 al~~-~-~~~dlvIiDT~ 191 (296)
T 2px0_A 176 AKEL-F-SEYDHVFVDTA 191 (296)
T ss_dssp HHHH-G-GGSSEEEEECC
T ss_pred HHHH-h-cCCCEEEEeCC
Confidence 4443 3 33447788843
No 282
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.90 E-value=0.021 Score=53.55 Aligned_cols=22 Identities=9% Similarity=0.249 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+|+|+|+.|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 283
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.90 E-value=0.03 Score=52.55 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|+|..|.|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999997664
No 284
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.84 E-value=0.052 Score=56.77 Aligned_cols=43 Identities=23% Similarity=0.251 Sum_probs=32.6
Q ss_pred eechhhHHHHHHHHHc--CCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 159 VGLDDRMEELLDLLIE--GPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 159 vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
|+.+.-.+++++.+.. ..+....|.|+|+.|+||||+++.+..
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 4455666777777653 233467799999999999999998877
No 285
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.76 E-value=0.033 Score=52.40 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+|+|+|+.|+||||+++.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999999999876
No 286
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.74 E-value=0.033 Score=53.21 Aligned_cols=22 Identities=14% Similarity=0.155 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+++|+|+.|.||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 287
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.72 E-value=0.02 Score=56.18 Aligned_cols=112 Identities=14% Similarity=-0.041 Sum_probs=63.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHHHH
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILH 258 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 258 (824)
-.++.|+|..|.||||++..+.+ +...+-..++.+. .... .+ -..++++.++.... ........+....+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~--r~~~~g~kVli~~--~~~d--~r-~~~~i~srlG~~~~--~~~~~~~~~i~~~i~ 82 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLH--RLEYADVKYLVFK--PKID--TR-SIRNIQSRTGTSLP--SVEVESAPEILNYIM 82 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEE--ECCC--GG-GCSSCCCCCCCSSC--CEEESSTHHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEE--eccC--ch-HHHHHHHhcCCCcc--ccccCCHHHHHHHHH
Confidence 46889999999999999987776 3333322344443 2221 11 11234444443221 122234456666666
Q ss_pred HhcCCCeE-EEEEecCCCh--hhHHHHHhhCCCCCCCcEEEEEechH
Q 003387 259 EYLMTKRY-LIVIDDVWSI--DMWDVIQEILPDNQNGSRVLITLTDI 302 (824)
Q Consensus 259 ~~L~~kr~-LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR~~ 302 (824)
+.+.+.++ +||+|.+..- +..+.+.. +.+ .|-.||+|-+..
T Consensus 83 ~~~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 83 SNSFNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDK 126 (223)
T ss_dssp STTSCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSB
T ss_pred HHhhCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEeccc
Confidence 66655555 9999999642 34444432 222 267889888855
No 288
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.69 E-value=0.024 Score=53.89 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+.|.|+|+.|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999987
No 289
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.64 E-value=0.04 Score=56.34 Aligned_cols=48 Identities=21% Similarity=0.260 Sum_probs=34.9
Q ss_pred CCCCCceechhhHHHHHHHHHc--C---------CCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 153 SKSRDTVGLDDRMEELLDLLIE--G---------PPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 153 ~~~~~~vGr~~~~~~l~~~L~~--~---------~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..-++++|.++.++++.+.... . .-... +.|+|..|+||||||+.+.+
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHH
Confidence 3456789988877776655432 1 01122 89999999999999999998
No 290
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.62 E-value=0.051 Score=60.25 Aligned_cols=42 Identities=17% Similarity=0.135 Sum_probs=36.2
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..++|.+..++.+...+..+. -|-++|.+|+|||+||+.+.+
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~----~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC----EEEEECCSSSSHHHHHHHGGG
T ss_pred hhhHHHHHHHHHHHHHHhcCC----eeEeecCchHHHHHHHHHHHH
Confidence 467899999988888877653 678999999999999999998
No 291
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.62 E-value=0.036 Score=53.57 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+|.|+|+.|.||||+|+.+..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999988
No 292
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.60 E-value=0.032 Score=52.75 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 003387 181 VVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
.++|+|..|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998763
No 293
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.59 E-value=0.09 Score=55.61 Aligned_cols=111 Identities=12% Similarity=0.108 Sum_probs=64.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCce-eEEEECCCCCCCCHHHHHHHHHHHhCCCCCcccc-cccCHHHHHHH
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDC-HAWITEPYSNEYDADQILDIVIKFLMPSSRLSEI-MDKNYEMKKII 256 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~-~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~~ 256 (824)
-.+++|+|+.|.||||+.+.+.+ .+...... ++.+.+++.-.... ......+. ...+.......
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g--~~~~~~~~~i~t~ed~~e~~~~~------------~~~~v~q~~~~~~~~~~~~~ 188 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLD--YLNNTKYHHILTIEDPIEFVHES------------KKCLVNQREVHRDTLGFSEA 188 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH--HHHHHCCCEEEEEESSCCSCCCC------------SSSEEEEEEBTTTBSCHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh--cccCCCCcEEEEccCcHHhhhhc------------cccceeeeeeccccCCHHHH
Confidence 34999999999999999999877 33322222 23333211110000 00000000 00111234457
Q ss_pred HHHhcCCCeEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEechHHHHh
Q 003387 257 LHEYLMTKRYLIVIDDVWSIDMWDVIQEILPDNQNGSRVLITLTDIRIII 306 (824)
Q Consensus 257 l~~~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~ 306 (824)
|...|....=+|++|.+-+.+.++.+.... ..|.-|++||-..+.+.
T Consensus 189 La~aL~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 189 LRSALREDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp HHHHTTSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHHH
T ss_pred HHHHhhhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHHH
Confidence 888898888899999999877666655432 23666888887765544
No 294
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.59 E-value=0.033 Score=53.89 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999977
No 295
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.56 E-value=0.11 Score=56.32 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
...+|.++|.+|+||||++..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999998876
No 296
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.56 E-value=0.04 Score=53.48 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
...+|+|+|+.|.||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999987
No 297
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.55 E-value=0.027 Score=53.71 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 298
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.52 E-value=0.032 Score=53.86 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+|+|+|+.|+||||+++.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 299
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.49 E-value=0.031 Score=53.37 Aligned_cols=22 Identities=9% Similarity=0.152 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+|.|.|+.|+||||+|+.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 300
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.43 E-value=0.077 Score=54.83 Aligned_cols=92 Identities=13% Similarity=0.059 Sum_probs=48.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHH--HHHHHHHHHhCCCCCcccccccCHHHH-H
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDAD--QILDIVIKFLMPSSRLSEIMDKNYEMK-K 254 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~-~ 254 (824)
...+|.|+|.+|+||||++..+.. .....=..+.++. . ..+... +-+...++..+... .+.....+.... .
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~--~l~~~g~kV~lv~--~-D~~r~~a~eqL~~~~~~~gl~~-~~~~s~~~~~~v~~ 176 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK--MFVDEGKSVVLAA--A-DTFRAAAIEQLKIWGERVGATV-ISHSEGADPAAVAF 176 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH--HHHHTTCCEEEEE--E-CTTCHHHHHHHHHHHHHHTCEE-ECCSTTCCHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH--HHHhcCCEEEEEc--c-ccccHHHHHHHHHHHHHcCCcE-EecCCccCHHHHHH
Confidence 468999999999999999999887 3332222345554 2 222222 22334445444311 000111122222 2
Q ss_pred HHHHHhcCCCeEEEEEecCCC
Q 003387 255 IILHEYLMTKRYLIVIDDVWS 275 (824)
Q Consensus 255 ~~l~~~L~~kr~LlVlDdv~~ 275 (824)
..+...+..+.-++++|-.-.
T Consensus 177 ~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 177 DAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHHHhcCCCEEEEECCCc
Confidence 344444444444788887643
No 301
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.39 E-value=0.041 Score=53.58 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
...+|+|+|..|.|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999887
No 302
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.36 E-value=0.029 Score=54.32 Aligned_cols=23 Identities=9% Similarity=0.170 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..+|.|+|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999977
No 303
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.34 E-value=0.043 Score=53.18 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+|+|+|+.|.||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 304
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.33 E-value=0.079 Score=51.40 Aligned_cols=23 Identities=17% Similarity=-0.000 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..+|.|.|+.|+||||+|+.+.+
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 305
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.25 E-value=0.039 Score=51.51 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=20.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
...+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999977
No 306
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.23 E-value=0.046 Score=52.22 Aligned_cols=23 Identities=9% Similarity=0.101 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..+|.|+|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999976
No 307
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.23 E-value=0.083 Score=57.42 Aligned_cols=49 Identities=8% Similarity=0.215 Sum_probs=32.1
Q ss_pred EEEEEcCCCChHHHHHHHHhCCccccCCC-ceeEEEECCCCCCC-CHHHHHHHHH
Q 003387 181 VVAILDSIGLDKTAFAGEAYNSSYVKHYF-DCHAWITEPYSNEY-DADQILDIVI 233 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F-~~~~wv~~~vs~~~-~~~~~~~~i~ 233 (824)
.++|+|..|+|||||++.+..+ ....+ +.++++- +.+.. ...++..++.
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~--~~~~~~~i~V~~~--iGerttev~el~~~l~ 203 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHN--IAQEHGGISVFAG--VGERTREGNDLYHEMK 203 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHH--HHHHTCCCEEEEE--ESSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhh--hhhccCcEEEEee--eccCchHHHHHHHHhh
Confidence 5899999999999999998873 32222 3455665 55553 3334555454
No 308
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.21 E-value=0.039 Score=53.44 Aligned_cols=23 Identities=9% Similarity=0.192 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+|+|+|+.|+||||+++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999977
No 309
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.21 E-value=0.039 Score=53.36 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999876
No 310
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.20 E-value=0.039 Score=53.69 Aligned_cols=23 Identities=9% Similarity=0.202 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+|+|+|+.|+|||||++.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999999987
No 311
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.20 E-value=0.039 Score=52.65 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+|.|.|+.|+||||+|+.+.+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 312
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.20 E-value=0.053 Score=58.19 Aligned_cols=46 Identities=13% Similarity=0.097 Sum_probs=35.2
Q ss_pred CCceechhhHHHHHHHHHc----------------------------CCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIE----------------------------GPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~----------------------------~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..++|.+..++.|...+.. .......+.++|+.|+||||+|+.+.+
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 4578988888888777621 111234688999999999999999998
No 313
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.15 E-value=0.076 Score=52.16 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=27.4
Q ss_pred hHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 003387 164 RMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 164 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
..+.+.+.+... ...+|.|+|.+|+|||||+..+...
T Consensus 25 ~a~~~r~~~~~~--~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 25 LADKNRKLLNKH--GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHHT--TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 344444444333 4789999999999999999998873
No 314
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.14 E-value=0.048 Score=52.60 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=22.7
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 177 PQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 177 ~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
+...+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999999987
No 315
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.11 E-value=0.047 Score=51.90 Aligned_cols=109 Identities=13% Similarity=-0.027 Sum_probs=50.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHHHHH
Q 003387 180 SVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIILHE 259 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 259 (824)
.++.|+|..|+||||++..+..... .... .++.+. ... |.+.-...+...++.... .....+. ..+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~-~~g~-~v~~~~--~~~--d~r~~~~~i~s~~g~~~~--~~~~~~~----~~~~~ 71 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK-LGKK-KVAVFK--PKI--DSRYHSTMIVSHSGNGVE--AHVIERP----EEMRK 71 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH-HTTC-EEEEEE--EC-------CCCEECC----CEE--CEEESSG----GGGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH-HCCC-eEEEEe--ecc--ccccCcccEEecCCCcee--eEEECCH----HHHHH
Confidence 4788999999999999955554211 1122 233332 111 100000011111111100 0111111 22333
Q ss_pred hcCCCeEEEEEecCCCh-hhHHHHHhhCCCCCCCcEEEEEechH
Q 003387 260 YLMTKRYLIVIDDVWSI-DMWDVIQEILPDNQNGSRVLITLTDI 302 (824)
Q Consensus 260 ~L~~kr~LlVlDdv~~~-~~~~~l~~~~~~~~~gs~ilvTtR~~ 302 (824)
.+.++.-+|++|.+... .+|......+.+. |..|++|.++.
T Consensus 72 ~~~~~~dvviIDE~Q~~~~~~~~~l~~l~~~--~~~Vi~~Gl~~ 113 (184)
T 2orw_A 72 YIEEDTRGVFIDEVQFFNPSLFEVVKDLLDR--GIDVFCAGLDL 113 (184)
T ss_dssp GCCTTEEEEEECCGGGSCTTHHHHHHHHHHT--TCEEEEEEESB
T ss_pred HhcCCCCEEEEECcccCCHHHHHHHHHHHHC--CCCEEEEeecc
Confidence 44455679999999754 3454444333222 67899988754
No 316
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.11 E-value=0.038 Score=53.39 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 003387 181 VVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~ 201 (824)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999987
No 317
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.08 E-value=0.12 Score=50.92 Aligned_cols=47 Identities=15% Similarity=0.258 Sum_probs=31.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCccc---cC-CCceeEEEECCCCCCCCHH
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYNSSYV---KH-YFDCHAWITEPYSNEYDAD 226 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~---~~-~F~~~~wv~~~vs~~~~~~ 226 (824)
.-.+++|+|..|+|||||++.+...... .. .-..++|+. -...+...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~--~~~~~~~~ 74 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID--TENTFRPE 74 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE--SSSCCCHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEE--CCCCCCHH
Confidence 3579999999999999999999752111 11 234578887 44434433
No 318
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.06 E-value=0.036 Score=53.50 Aligned_cols=23 Identities=13% Similarity=0.218 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-++++|+|+.|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35789999999999999999876
No 319
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.04 E-value=0.035 Score=53.83 Aligned_cols=23 Identities=9% Similarity=0.250 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.++|.|+|+.|+||||+++.+..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999977
No 320
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.03 E-value=0.074 Score=55.26 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=22.5
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 177 PQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 177 ~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
....+|||.|..|+||||+|+.+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4577999999999999999999866
No 321
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.99 E-value=0.069 Score=53.37 Aligned_cols=38 Identities=13% Similarity=-0.069 Sum_probs=27.5
Q ss_pred hHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 164 RMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 164 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+.++............+|.|.|+.|+||||+|+.+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 14 LLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp HHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 33444444433333567899999999999999999976
No 322
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.99 E-value=0.032 Score=53.04 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=23.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCccccCCCce
Q 003387 180 SVVAILDSIGLDKTAFAGEAYNSSYVKHYFDC 211 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~ 211 (824)
+.|.|+|+.|+|||||++.+.. +....|..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~--~~~~~~~~ 31 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA--EYPDSFGF 31 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH--HCTTTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHH--hCCCCeEE
Confidence 4578999999999999999987 33444543
No 323
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.98 E-value=0.051 Score=54.63 Aligned_cols=24 Identities=4% Similarity=0.117 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
...+|+|.|+.|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999876
No 324
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.97 E-value=0.038 Score=52.26 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..+|.|+|+.|+||||+|+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999999986
No 325
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.96 E-value=0.05 Score=54.74 Aligned_cols=22 Identities=18% Similarity=0.013 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
++|.|+|+.|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 5789999999999999999976
No 326
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.96 E-value=0.055 Score=49.92 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.-.+++|+|..|.|||||++.+..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356999999999999999999987
No 327
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.95 E-value=0.052 Score=51.60 Aligned_cols=24 Identities=25% Similarity=0.111 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.-.+|.|+|+.|+||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 328
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.95 E-value=0.057 Score=52.15 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
...+|+|.|+.|+||||+|+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999986
No 329
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.93 E-value=0.078 Score=54.40 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=27.8
Q ss_pred hHHHHHHHHHcC---CCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 164 RMEELLDLLIEG---PPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 164 ~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+++++..+..+ .....+|.|+|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344444444433 23468999999999999999999976
No 330
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.91 E-value=0.051 Score=51.66 Aligned_cols=23 Identities=22% Similarity=0.079 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..+|+|+|+.|+||||+|+.+.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 331
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.91 E-value=0.049 Score=50.69 Aligned_cols=24 Identities=13% Similarity=0.068 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
...+++|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999987
No 332
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.90 E-value=0.069 Score=52.26 Aligned_cols=40 Identities=23% Similarity=0.192 Sum_probs=30.4
Q ss_pred echhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 160 GLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 160 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
+.++..+.+.+.+... ...+|.|+|.+|+|||||+..+..
T Consensus 13 ~~~~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 13 ENKRLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp HHHHHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHH
Confidence 4445555565555433 378999999999999999999877
No 333
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.89 E-value=0.083 Score=56.12 Aligned_cols=37 Identities=19% Similarity=0.116 Sum_probs=28.7
Q ss_pred HHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 165 MEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 165 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..++.+.+........+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4455555554445688999999999999999998865
No 334
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.88 E-value=0.098 Score=54.49 Aligned_cols=37 Identities=16% Similarity=0.099 Sum_probs=27.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEE
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIT 216 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~ 216 (824)
..++|+|+|.+|+||||++..+.. .....=..+.+++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~--~l~~~g~kVllid 140 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN--YYAELGYKVLIAA 140 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH--HHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEe
Confidence 468999999999999999999877 3333223455665
No 335
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.88 E-value=0.048 Score=53.70 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999977
No 336
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.85 E-value=0.048 Score=52.98 Aligned_cols=23 Identities=13% Similarity=0.053 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|+|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999876
No 337
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.84 E-value=0.056 Score=56.12 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=22.5
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 177 PQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 177 ~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
....+|+|+|..|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3468999999999999999999887
No 338
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.82 E-value=0.05 Score=54.48 Aligned_cols=23 Identities=22% Similarity=0.161 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..+|+|+|+.|+|||||++.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999994
No 339
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.80 E-value=0.055 Score=51.35 Aligned_cols=23 Identities=22% Similarity=0.111 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+|.|.|+.|+||||+|+.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999976
No 340
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.79 E-value=0.056 Score=51.68 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..+|.|.|+.|+||||+|+.+.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 341
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.77 E-value=0.041 Score=51.77 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
++|.|+|+.|+||||+|+.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999987
No 342
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.66 E-value=0.078 Score=53.30 Aligned_cols=40 Identities=18% Similarity=0.142 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHHcC---CCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 162 DDRMEELLDLLIEG---PPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 162 ~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
+...+++++.+..+ .....+|.|+|++|+||||+|+.+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 12 KHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34445555555543 23468999999999999999999977
No 343
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=92.65 E-value=0.13 Score=56.04 Aligned_cols=101 Identities=18% Similarity=0.157 Sum_probs=54.2
Q ss_pred HHHHHHc-CCCCeEEEEEEcCCCChHHHHH-HHHhCCccccCCCce-eEEEECCCCCCC-CHHHHHHHHHHHhCC-----
Q 003387 168 LLDLLIE-GPPQLSVVAILDSIGLDKTAFA-GEAYNSSYVKHYFDC-HAWITEPYSNEY-DADQILDIVIKFLMP----- 238 (824)
Q Consensus 168 l~~~L~~-~~~~~~vi~I~G~gGvGKTtLa-~~v~~~~~~~~~F~~-~~wv~~~vs~~~-~~~~~~~~i~~~l~~----- 238 (824)
.++.|.. +. -.-++|+|..|+|||+|| ..|.|. . .-+. ++++- +.+.. .+.++.+++...=..
T Consensus 165 aID~l~Pigr--GQR~~I~g~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~--IGeR~~Ev~e~~~~~~~~g~m~rtvv 236 (515)
T 2r9v_A 165 AIDSMIPIGR--GQRELIIGDRQTGKTAIAIDTIINQ--K--GQGVYCIYVA--IGQKKSAIARIIDKLRQYGAMEYTTV 236 (515)
T ss_dssp HHHHHSCEET--TCBEEEEEETTSSHHHHHHHHHHTT--T--TTTEEEEEEE--ESCCHHHHHHHHHHHHHTTGGGGEEE
T ss_pred cccccccccc--CCEEEEEcCCCCCccHHHHHHHHHh--h--cCCcEEEEEE--cCCCcHHHHHHHHHHHhCCCcceeEE
Confidence 4555543 22 246899999999999995 588883 2 2443 35555 66654 334555555442110
Q ss_pred ---CCCcccccccCHHHHHHHHHHhc--CCCeEEEEEecCCCh
Q 003387 239 ---SSRLSEIMDKNYEMKKIILHEYL--MTKRYLIVIDDVWSI 276 (824)
Q Consensus 239 ---~~~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~ 276 (824)
..+.|.....-.......+.+++ ++|.+||++||+..-
T Consensus 237 V~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr~ 279 (515)
T 2r9v_A 237 VVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSKH 279 (515)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHHH
Confidence 11111000000111122333333 579999999999643
No 344
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.61 E-value=0.063 Score=51.40 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.-.+|+|+|+.|+||||+|+.+.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999877
No 345
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.61 E-value=0.062 Score=54.31 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..+|.|+|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 346
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.57 E-value=0.042 Score=52.13 Aligned_cols=22 Identities=9% Similarity=0.110 Sum_probs=20.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+|.|+|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999977
No 347
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.55 E-value=0.056 Score=51.75 Aligned_cols=23 Identities=9% Similarity=0.157 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..+|.|+|+.|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 348
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.52 E-value=0.058 Score=51.68 Aligned_cols=24 Identities=4% Similarity=0.230 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.-++|+|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 357899999999999999999986
No 349
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.51 E-value=0.1 Score=51.79 Aligned_cols=23 Identities=17% Similarity=0.108 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|+|+.|.|||||++.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 45899999999999999999987
No 350
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.46 E-value=0.048 Score=53.49 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999877
No 351
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.46 E-value=0.07 Score=53.36 Aligned_cols=23 Identities=4% Similarity=0.088 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..+|+|.|..|.|||||++.+..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999876
No 352
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.45 E-value=0.1 Score=51.92 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=21.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+++|+|..|.|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 7999999999999999999987
No 353
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.45 E-value=0.32 Score=51.18 Aligned_cols=35 Identities=23% Similarity=0.118 Sum_probs=26.6
Q ss_pred HHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 166 EELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 166 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-++++.+..=. .-.-++|+|..|+|||||++.+.+
T Consensus 163 iraID~l~Pig-rGQR~lIfg~~g~GKT~Ll~~Ia~ 197 (427)
T 3l0o_A 163 TRLIDLFAPIG-KGQRGMIVAPPKAGKTTILKEIAN 197 (427)
T ss_dssp HHHHHHHSCCB-TTCEEEEEECTTCCHHHHHHHHHH
T ss_pred chhhhhccccc-CCceEEEecCCCCChhHHHHHHHH
Confidence 35666665422 234789999999999999999888
No 354
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.43 E-value=0.049 Score=51.01 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+|.|.|+.|+||||+|+.+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999977
No 355
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.39 E-value=0.065 Score=51.08 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999977
No 356
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.38 E-value=0.056 Score=51.89 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..+|+|.|+.|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 357
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.37 E-value=0.18 Score=54.41 Aligned_cols=36 Identities=17% Similarity=0.022 Sum_probs=26.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEE
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIT 216 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~ 216 (824)
..+|.|+|.+|+||||++..+.. .....=..+..++
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~--~l~~~g~~Vllvd 133 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL--YYKGKGRRPLLVA 133 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEee
Confidence 67999999999999999999887 3433323445555
No 358
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.34 E-value=0.1 Score=51.28 Aligned_cols=23 Identities=17% Similarity=0.037 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|+|..|.|||||.+.+..
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999987
No 359
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.33 E-value=0.065 Score=49.84 Aligned_cols=21 Identities=5% Similarity=0.018 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 003387 181 VVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 360
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.33 E-value=0.11 Score=52.90 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|+|+.|.|||||++.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999999987
No 361
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.27 E-value=0.12 Score=55.15 Aligned_cols=110 Identities=14% Similarity=0.201 Sum_probs=60.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeE-EEECCCCCCCCHHHHHHHHHHHhCCCCC-cccc-cccCHHHHHH
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHA-WITEPYSNEYDADQILDIVIKFLMPSSR-LSEI-MDKNYEMKKI 255 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~-wv~~~vs~~~~~~~~~~~i~~~l~~~~~-~~~~-~~~~~~~~~~ 255 (824)
-.+++|+|..|.||||+++.+.. .+.......+ ++.+++. +. +..... .++. -..+......
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~--~~~~~~~g~I~~~e~~~e--~~-----------~~~~~~~v~Q~~~g~~~~~~~~ 200 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIEDPIE--YV-----------FKHKKSIVNQREVGEDTKSFAD 200 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHH--HHHHHSCCEEEEEESSCC--SC-----------CCCSSSEEEEEEBTTTBSCSHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh--hcCcCCCcEEEEecccHh--hh-----------hccCceEEEeeecCCCHHHHHH
Confidence 56899999999999999999987 3332223333 4431111 10 000000 0000 0001122345
Q ss_pred HHHHhcCCCeEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEechHHHHh
Q 003387 256 ILHEYLMTKRYLIVIDDVWSIDMWDVIQEILPDNQNGSRVLITLTDIRIII 306 (824)
Q Consensus 256 ~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~ 306 (824)
.+...|....=+|++|.+.+.+......... ..|.-|+.|+-..++..
T Consensus 201 ~l~~~L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~~~~ 248 (372)
T 2ewv_A 201 ALRAALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTAID 248 (372)
T ss_dssp HHHHHTTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCSHHH
T ss_pred HHHHHhhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcchHHH
Confidence 6777777677789999998765544433222 23666887776655433
No 362
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.27 E-value=0.35 Score=52.33 Aligned_cols=24 Identities=13% Similarity=0.176 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
...||.|+|.+|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999988876
No 363
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.25 E-value=0.063 Score=51.30 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 003387 181 VVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~ 201 (824)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 364
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.22 E-value=0.067 Score=53.78 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+|+|+|+.|.||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999985
No 365
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.20 E-value=0.064 Score=52.54 Aligned_cols=23 Identities=9% Similarity=0.109 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|+|+.|+|||||.+.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46999999999999999999987
No 366
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.18 E-value=0.12 Score=49.35 Aligned_cols=21 Identities=10% Similarity=-0.053 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 003387 181 VVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 367
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.18 E-value=0.072 Score=55.04 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
...+|+|+|.+|+||||+++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 357999999999999999999876
No 368
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.16 E-value=0.069 Score=51.48 Aligned_cols=23 Identities=22% Similarity=0.075 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..+|.|+|+.|+||||+|+.+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999977
No 369
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.14 E-value=0.051 Score=51.42 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=16.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999976
No 370
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.12 E-value=0.12 Score=52.27 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|+|..|.|||||.+.+..
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999987
No 371
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=92.12 E-value=0.14 Score=55.82 Aligned_cols=95 Identities=12% Similarity=0.069 Sum_probs=51.9
Q ss_pred EEEEEEcCCCChHHHHH-HHHhCCccccCCCce-eEEEECCCCCCCC-HHHHHHHHHHHhCC--------CCCcccccc-
Q 003387 180 SVVAILDSIGLDKTAFA-GEAYNSSYVKHYFDC-HAWITEPYSNEYD-ADQILDIVIKFLMP--------SSRLSEIMD- 247 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa-~~v~~~~~~~~~F~~-~~wv~~~vs~~~~-~~~~~~~i~~~l~~--------~~~~~~~~~- 247 (824)
.-++|+|..|+|||+|| ..|.|. .. -+. ++++- +.+..+ +.++.+++...=.. ..+.|....
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~--~~--~dv~~V~~~--iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~ 237 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQ--QG--QNVICVYVA--IGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQY 237 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTC--CT--TTCEEEEEE--ESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTT
T ss_pred CEEEEecCCCCCccHHHHHHHHHh--hc--CCcEEEEEE--cCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHH
Confidence 46799999999999995 688884 32 342 35555 665543 33444444331100 111111111
Q ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEecCCCh-hhHHHH
Q 003387 248 ---KNYEMKKIILHEYLMTKRYLIVIDDVWSI-DMWDVI 282 (824)
Q Consensus 248 ---~~~~~~~~~l~~~L~~kr~LlVlDdv~~~-~~~~~l 282 (824)
...-..++.+++ ++|.+||++||+... ..+.++
T Consensus 238 ~a~~~a~tiAEyfrd--~G~dVLli~Dsltr~A~A~REi 274 (507)
T 1fx0_A 238 LAPYTGAALAEYFMY--RERHTLIIYDDLSKQAQAYRQM 274 (507)
T ss_dssp HHHHHHHHHHHHHHH--TTCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--cCCcEEEEEecHHHHHHHHHHH
Confidence 112233444444 589999999998653 234444
No 372
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.11 E-value=0.075 Score=54.36 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999873
No 373
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.11 E-value=0.1 Score=56.27 Aligned_cols=91 Identities=12% Similarity=0.131 Sum_probs=51.1
Q ss_pred EEEEEcCCCChHHHHHHHHhCCccccCCCc----eeEEEECCCCCCC-CHHHHHHHHHHHh--CC------CCCcccccc
Q 003387 181 VVAILDSIGLDKTAFAGEAYNSSYVKHYFD----CHAWITEPYSNEY-DADQILDIVIKFL--MP------SSRLSEIMD 247 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~----~~~wv~~~vs~~~-~~~~~~~~i~~~l--~~------~~~~~~~~~ 247 (824)
-++|.|..|+|||||+..+.+.... +-+ .++++- +.+.. .+.++.+++.+.= .. ..+.|....
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~--iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r 228 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAA--IGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIER 228 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEE--EEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEE--ecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHH
Confidence 4689999999999999999884332 223 455555 55543 3345556554421 00 011110011
Q ss_pred cCHHHHHHHHHHhc---CCCeEEEEEecCCC
Q 003387 248 KNYEMKKIILHEYL---MTKRYLIVIDDVWS 275 (824)
Q Consensus 248 ~~~~~~~~~l~~~L---~~kr~LlVlDdv~~ 275 (824)
.-.......+.+++ +++.+||++||+-.
T Consensus 229 ~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 229 IATPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 11122233455555 37999999999964
No 374
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.10 E-value=0.062 Score=51.29 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 003387 181 VVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~ 201 (824)
+++|+|..|+|||||++.+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 689999999999999999876
No 375
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.03 E-value=0.053 Score=50.79 Aligned_cols=22 Identities=14% Similarity=0.193 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
++++|+|..|.|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999887
No 376
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=91.97 E-value=0.055 Score=57.33 Aligned_cols=45 Identities=18% Similarity=0.145 Sum_probs=33.1
Q ss_pred CCCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 155 SRDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 155 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-+.++|.+..++.+...+.... ..-+-|+|..|+|||++|+.+.+
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHH
T ss_pred chhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHH
Confidence 4568999886665544444322 22388999999999999999987
No 377
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.96 E-value=0.32 Score=50.81 Aligned_cols=64 Identities=20% Similarity=0.036 Sum_probs=41.6
Q ss_pred HHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhC
Q 003387 167 ELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLM 237 (824)
Q Consensus 167 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~ 237 (824)
.|-+++ .+=..-.++.|.|.+|+||||+|..+..+... .=..++|++ -+.+..++...++....
T Consensus 35 ~LD~~~-gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fS----lEms~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 35 QLDNYT-SGFNKGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFS----LEMSAEQLALRALSDLT 98 (338)
T ss_dssp HHHHHH-CSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEE----SSSCHHHHHHHHHHHHH
T ss_pred HHHHHh-cCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEe----CCCCHHHHHHHHHHHhh
Confidence 343444 34333568999999999999999988774222 113566665 34567777777766543
No 378
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.92 E-value=0.077 Score=51.64 Aligned_cols=23 Identities=4% Similarity=-0.033 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..+|+|.|+.|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 379
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=91.91 E-value=0.24 Score=51.50 Aligned_cols=65 Identities=18% Similarity=0.090 Sum_probs=43.2
Q ss_pred HHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhC
Q 003387 166 EELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLM 237 (824)
Q Consensus 166 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~ 237 (824)
..+-+++ .+=..-.++.|.|.+|+||||+|..+..+.-.+. ..++|++ .. .+..++...++....
T Consensus 56 ~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~s--lE--~s~~~l~~R~~~~~~ 120 (315)
T 3bh0_A 56 TELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHS--LE--MGKKENIKRLIVTAG 120 (315)
T ss_dssp HHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEE--SS--SCHHHHHHHHHHHHT
T ss_pred HHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEE--CC--CCHHHHHHHHHHHHc
Confidence 3444444 4433456899999999999999988876322222 5677876 33 467777777776543
No 380
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.86 E-value=0.12 Score=54.48 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
...+++|+|..|+||||+++.+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 457999999999999999999876
No 381
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.84 E-value=0.25 Score=53.92 Aligned_cols=90 Identities=14% Similarity=0.103 Sum_probs=49.5
Q ss_pred EEEEEEcCCCChHHHHH-HHHhCCccccCCCce-eEEEECCCCCCC-CHHHHHHHHHHHhCCC--------CCccccccc
Q 003387 180 SVVAILDSIGLDKTAFA-GEAYNSSYVKHYFDC-HAWITEPYSNEY-DADQILDIVIKFLMPS--------SRLSEIMDK 248 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa-~~v~~~~~~~~~F~~-~~wv~~~vs~~~-~~~~~~~~i~~~l~~~--------~~~~~~~~~ 248 (824)
.-++|+|..|+|||+|| ..|.|. . .-+. ++++- +.+.. .+.++.+++...=... .+.|.....
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~--iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~ 236 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQ--K--GQDVICIYVA--IGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLY 236 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGG--G--SCSEEEEEEE--ESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHHh--h--cCCcEEEEEE--CCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHH
Confidence 46799999999999995 578883 3 2343 35565 66654 3345555555421111 010000000
Q ss_pred CHHHHHHHHHHhc--CCCeEEEEEecCCC
Q 003387 249 NYEMKKIILHEYL--MTKRYLIVIDDVWS 275 (824)
Q Consensus 249 ~~~~~~~~l~~~L--~~kr~LlVlDdv~~ 275 (824)
-.......+.+++ ++|.+||++||+..
T Consensus 237 ~a~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 237 LAPYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 0011122333333 57999999999964
No 382
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.84 E-value=0.084 Score=57.25 Aligned_cols=52 Identities=15% Similarity=0.182 Sum_probs=38.5
Q ss_pred CCceechhhHHHHHHHHHcC------------CCCeEEEEEEcCCCChHHHHHHHHhCCccccCCC
Q 003387 156 RDTVGLDDRMEELLDLLIEG------------PPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYF 209 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F 209 (824)
..++|.+..++.+...+... ....+-|.++|++|+||||+|+.+.+ .....|
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~--~l~~~~ 78 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK--LANAPF 78 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH--HTTCCE
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH--HcCCCc
Confidence 46889999888887766321 11245688999999999999999988 444444
No 383
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.82 E-value=0.14 Score=51.03 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|+|..|.|||||.+.+..
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999987
No 384
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.81 E-value=0.12 Score=50.42 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=21.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
.+++|+|..|.|||||++.+..-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999873
No 385
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.79 E-value=0.12 Score=50.13 Aligned_cols=22 Identities=27% Similarity=0.140 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+++|+|..|.|||||++.+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3899999999999999999875
No 386
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.78 E-value=0.14 Score=51.75 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|+|..|.|||||++.+..
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 46899999999999999999987
No 387
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.78 E-value=0.089 Score=49.59 Aligned_cols=23 Identities=17% Similarity=-0.002 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+|+|+|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999977
No 388
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.72 E-value=0.086 Score=51.40 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=22.9
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 177 PQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 177 ~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
...+||.|.|++|+||||.|+.+.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999987
No 389
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.71 E-value=0.044 Score=53.37 Aligned_cols=22 Identities=18% Similarity=0.173 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
++|+|+|..|+||||+|+.+..
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3789999999999999999877
No 390
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.71 E-value=0.14 Score=51.14 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|+|..|.|||||++.+..
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999987
No 391
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.69 E-value=0.14 Score=51.41 Aligned_cols=23 Identities=13% Similarity=0.079 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|+|..|.|||||.+.+..
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999987
No 392
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.68 E-value=0.095 Score=54.12 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
...+++|+|..|+||||+++.+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357999999999999999999876
No 393
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.67 E-value=0.14 Score=51.50 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|+|..|.|||||.+.+..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999987
No 394
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.67 E-value=0.098 Score=51.14 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999865
No 395
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.66 E-value=0.14 Score=51.11 Aligned_cols=23 Identities=17% Similarity=0.098 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|+|..|.|||||++.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46999999999999999999976
No 396
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.62 E-value=0.14 Score=51.84 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|+|..|.|||||++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999987
No 397
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.62 E-value=0.15 Score=55.88 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=28.0
Q ss_pred HHHHHHHHHcCC-------CCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 165 MEELLDLLIEGP-------PQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 165 ~~~l~~~L~~~~-------~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+.|.+.|.... ..-.+++|+|..|+|||||++.+..
T Consensus 272 ~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 272 KEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp HHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHH
Confidence 445556664321 2457999999999999999999987
No 398
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.61 E-value=0.14 Score=50.48 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
-.+++|+|..|.|||||.+.+..-
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999883
No 399
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.60 E-value=0.14 Score=55.79 Aligned_cols=38 Identities=24% Similarity=0.181 Sum_probs=28.7
Q ss_pred hHHHHHHHHHcC-------CCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 164 RMEELLDLLIEG-------PPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 164 ~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++.++|... ....++|.|+|.+|+||||++..+..
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345566666532 13478999999999999999988876
No 400
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.58 E-value=0.079 Score=51.44 Aligned_cols=23 Identities=4% Similarity=-0.187 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..+|+|.|+.|+||||+|+.+.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 401
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.56 E-value=0.087 Score=52.64 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|+|+.|+|||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 46999999999999999998873
No 402
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.56 E-value=0.15 Score=51.79 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|+|..|.|||||++.+..
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999987
No 403
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.52 E-value=0.22 Score=63.59 Aligned_cols=99 Identities=18% Similarity=0.007 Sum_probs=62.2
Q ss_pred HHHHHHH-cCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCCCCCccc-
Q 003387 167 ELLDLLI-EGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMPSSRLSE- 244 (824)
Q Consensus 167 ~l~~~L~-~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~- 244 (824)
.+-.+|. .+=..-++|-|+|++|+||||||.++.. +....=..++|++ +...++... ++.++..-+...
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~--ea~~~G~~v~Fi~--~e~~~~~l~-----a~~~G~dl~~l~v 1484 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFID--AEHALDPIY-----ARKLGVDIDNLLC 1484 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEEC--TTSCCCHHH-----HHHTTCCTTTCEE
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEE--cccccCHHH-----HHHcCCCchhcee
Confidence 3555554 3323467999999999999999999877 3333323677888 888777766 445543211000
Q ss_pred ccccCHHHHHHHHHHhcC-CCeEEEEEecCC
Q 003387 245 IMDKNYEMKKIILHEYLM-TKRYLIVIDDVW 274 (824)
Q Consensus 245 ~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~ 274 (824)
......++....+++..+ .+--+||+|.+.
T Consensus 1485 ~~~~~~E~~l~~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1485 SQPDTGEQALEICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp ECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred ecCChHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 122234555555555543 466799999994
No 404
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.49 E-value=1.2 Score=43.74 Aligned_cols=105 Identities=16% Similarity=0.101 Sum_probs=54.6
Q ss_pred hHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCC-ccccCCC-ceeEEEECCCCCCCCHHHHHHHHHHHhCCCCC
Q 003387 164 RMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNS-SYVKHYF-DCHAWITEPYSNEYDADQILDIVIKFLMPSSR 241 (824)
Q Consensus 164 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~-~~~~~~F-~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~ 241 (824)
..++++..+..+ +.+.|+|..|.||||+.....-+ ....... ...+.+. +....-...+.+.+...++....
T Consensus 65 ~q~~~i~~i~~g----~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~--~p~~~la~q~~~~~~~~~~~~~~ 138 (235)
T 3llm_A 65 FESEILEAISQN----SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVT--QPRRISAVSVAERVAFERGEEPG 138 (235)
T ss_dssp GHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEE--ESSHHHHHHHHHHHHHTTTCCTT
T ss_pred HHHHHHHHHhcC----CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEe--ccchHHHHHHHHHHHHHhccccC
Confidence 455566666554 47899999999999866544321 1111222 2233332 22222223444444444432210
Q ss_pred ----------------cccccccCHHHHHHHHHHhcCCCeEEEEEecCCC
Q 003387 242 ----------------LSEIMDKNYEMKKIILHEYLMTKRYLIVIDDVWS 275 (824)
Q Consensus 242 ----------------~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 275 (824)
...+-..+.+.+...+...+++-+ +||+|.+..
T Consensus 139 ~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~~-~lVlDEah~ 187 (235)
T 3llm_A 139 KSCGYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGIS-HVIVDEIHE 187 (235)
T ss_dssp SSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHHCCTTCC-EEEECCTTS
T ss_pred ceEEEeechhhccCCCCCeEEEECHHHHHHHHHhhhcCCc-EEEEECCcc
Confidence 000112345666666766555444 789999986
No 405
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.45 E-value=0.062 Score=53.19 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=16.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHh-C
Q 003387 179 LSVVAILDSIGLDKTAFAGEAY-N 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~-~ 201 (824)
-.+++|+|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3689999999999999999998 6
No 406
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.41 E-value=0.099 Score=51.93 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
-.+++|+|..|.|||||++.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999883
No 407
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.40 E-value=0.1 Score=50.73 Aligned_cols=23 Identities=13% Similarity=-0.048 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..+|.|+|+.|+||||+|+.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999887
No 408
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.40 E-value=0.088 Score=50.74 Aligned_cols=23 Identities=9% Similarity=-0.106 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..+|+|.|+.|+||||+++.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999988
No 409
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.36 E-value=0.16 Score=51.42 Aligned_cols=23 Identities=9% Similarity=0.060 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|+|..|.|||||.+.+..
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999987
No 410
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.34 E-value=0.48 Score=51.74 Aligned_cols=70 Identities=20% Similarity=0.127 Sum_probs=42.7
Q ss_pred eechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHH
Q 003387 159 VGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKF 235 (824)
Q Consensus 159 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~ 235 (824)
.|...-...+-+++ .+=..-.++.|.|.+|+||||+|..+..+.-.+ =..++|++ -+-+..++...++..
T Consensus 178 ~gi~TG~~~LD~~l-gGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fS----lEms~~ql~~R~~~~ 247 (444)
T 3bgw_A 178 TGVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHS----LEMGKKENIKRLIVT 247 (444)
T ss_dssp CSBCCSCHHHHHHH-SSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEEC----SSSCTTHHHHHHHHH
T ss_pred CCcCCCcHHHHhhc-CCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEE----CCCCHHHHHHHHHHH
Confidence 34444445555555 343345789999999999999998887742222 12566665 233444555555544
No 411
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.29 E-value=0.11 Score=54.05 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
...+|+|+|..|.|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999887
No 412
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.27 E-value=0.22 Score=47.82 Aligned_cols=49 Identities=6% Similarity=-0.014 Sum_probs=32.1
Q ss_pred EEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHH
Q 003387 181 VVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVI 233 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~ 233 (824)
.|.|=|..|+||||.++.+.+ .....-..+++.. -.......+..++++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~tr--eP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKR--EPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEE--SSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEE--CCCCCcHHHHHHHHh
Confidence 478889999999999999988 5555444556555 222323334444444
No 413
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.26 E-value=0.099 Score=50.99 Aligned_cols=21 Identities=14% Similarity=0.166 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 003387 181 VVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999876
No 414
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.23 E-value=0.095 Score=51.66 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
...|.|.|+.|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 415
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.15 E-value=0.08 Score=52.98 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+|+|+|+.|.||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 416
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.14 E-value=0.11 Score=52.25 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
...++.+.|.||+||||++..+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 478899999999999999999875
No 417
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.09 E-value=0.11 Score=50.99 Aligned_cols=23 Identities=13% Similarity=0.069 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
...|.|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999977
No 418
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=91.05 E-value=0.57 Score=55.90 Aligned_cols=21 Identities=10% Similarity=-0.032 Sum_probs=19.8
Q ss_pred eEEEEEEcCCCChHHHHHHHH
Q 003387 179 LSVVAILDSIGLDKTAFAGEA 199 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v 199 (824)
-.+++|+|+.|.||||+.+.+
T Consensus 662 g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 579999999999999999998
No 419
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.05 E-value=0.11 Score=50.76 Aligned_cols=21 Identities=10% Similarity=0.088 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 003387 181 VVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999876
No 420
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.03 E-value=0.11 Score=48.81 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..+++|+|..|+|||||++.+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 57899999999999999999987
No 421
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.02 E-value=0.18 Score=51.39 Aligned_cols=23 Identities=13% Similarity=-0.049 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|+|..|.|||||++.+..
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999988
No 422
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.99 E-value=0.18 Score=49.71 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.-.+|.|.|+.|+||||+++.+.+
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999988
No 423
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.90 E-value=0.15 Score=50.88 Aligned_cols=22 Identities=9% Similarity=0.253 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+++|+|..|.|||||.+.+..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999987
No 424
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.89 E-value=0.12 Score=51.85 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|+|..|.|||||++.+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999988
No 425
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.85 E-value=0.12 Score=53.84 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+|+|+|+.|+||||||+.+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999887
No 426
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.79 E-value=0.14 Score=47.40 Aligned_cols=23 Identities=9% Similarity=0.146 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
..|+|+|.+|+|||||.+.+.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999874
No 427
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.78 E-value=0.12 Score=49.98 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 003387 181 VVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~ 201 (824)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999977
No 428
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.77 E-value=0.18 Score=53.68 Aligned_cols=36 Identities=17% Similarity=0.190 Sum_probs=27.3
Q ss_pred HHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 166 EELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 166 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..+++-+..+-..-++++|+|+.|.|||||++.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 344444443434467999999999999999999987
No 429
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.77 E-value=0.12 Score=48.95 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 003387 181 VVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
-|+|+|.+|+|||||++.+.+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 430
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.77 E-value=0.095 Score=56.85 Aligned_cols=93 Identities=13% Similarity=0.054 Sum_probs=51.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCccccCCC--ceeEEEECCCCCCC-CHHHHHHHHHHHhCC--------CCCccccccc
Q 003387 180 SVVAILDSIGLDKTAFAGEAYNSSYVKHYF--DCHAWITEPYSNEY-DADQILDIVIKFLMP--------SSRLSEIMDK 248 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F--~~~~wv~~~vs~~~-~~~~~~~~i~~~l~~--------~~~~~~~~~~ 248 (824)
.-++|.|..|+|||+|+..|.++....+.= +.++++- +.+.. .+.++.+++...=.. ..+.|.....
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~--iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~ 230 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAA--MGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERI 230 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEE--EEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEE--ccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHH
Confidence 356889999999999999998854332211 3455655 55554 344566666543111 0111100111
Q ss_pred CHHHHHHHHHHhcC---CCeEEEEEecCC
Q 003387 249 NYEMKKIILHEYLM---TKRYLIVIDDVW 274 (824)
Q Consensus 249 ~~~~~~~~l~~~L~---~kr~LlVlDdv~ 274 (824)
-.......+.++++ ++.+||++||+-
T Consensus 231 ~~~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 231 VTPRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 11222334455554 699999999984
No 431
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.75 E-value=0.15 Score=48.69 Aligned_cols=36 Identities=14% Similarity=0.193 Sum_probs=26.7
Q ss_pred HHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 165 MEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 165 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
...+..++.. -+.-+.+.|+|++|.||||+|..+.+
T Consensus 45 ~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 45 LGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHH
Confidence 4555555543 22345689999999999999988887
No 432
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.67 E-value=0.12 Score=52.21 Aligned_cols=24 Identities=21% Similarity=0.201 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
-.+++|+|..|.|||||++.+..-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999883
No 433
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=90.65 E-value=4.3 Score=42.73 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
....|+|+|.+|+|||||...+...
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999875
No 434
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.64 E-value=0.1 Score=51.23 Aligned_cols=23 Identities=13% Similarity=-0.139 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
...|.|.|+.|+||||+|+.+.+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 435
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=90.64 E-value=0.077 Score=57.18 Aligned_cols=93 Identities=12% Similarity=0.114 Sum_probs=50.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCcccc--------CCCc-eeEEEECCCCCCC-CHHHHHHHHHHHhCC---------CC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYNSSYVK--------HYFD-CHAWITEPYSNEY-DADQILDIVIKFLMP---------SS 240 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~~~~~~--------~~F~-~~~wv~~~vs~~~-~~~~~~~~i~~~l~~---------~~ 240 (824)
.-++|.|..|+|||||+..+.+..... ++=+ .++++- +.+.. .+.++.+++.+. +. ..
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~--iGeR~~Ev~e~~~~l~~~-g~~~rtvvv~~t~ 224 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAA--MGITQRELSYFIQEFERT-GALSRSVLFLNKA 224 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEE--EEECHHHHHHHHHHHHHT-SGGGGEEEEEEET
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEE--ecCchHHHHHHHHHhhhc-ccccceEEEEECC
Confidence 356899999999999999998853331 1111 455555 55543 334455554432 10 00
Q ss_pred CcccccccCHHHHHHHHHHhc---CCCeEEEEEecCCC
Q 003387 241 RLSEIMDKNYEMKKIILHEYL---MTKRYLIVIDDVWS 275 (824)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~~L---~~kr~LlVlDdv~~ 275 (824)
+.|.....-.......+.+++ +++.+||++||+-.
T Consensus 225 d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 225 DDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp TSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 101001111122233445555 37999999999964
No 436
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.58 E-value=0.13 Score=51.85 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|+|..|.|||||++.+..
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999987
No 437
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.56 E-value=0.27 Score=50.63 Aligned_cols=52 Identities=10% Similarity=0.088 Sum_probs=34.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCc-eeEEEECCCCCCCCHHHHHHHHHHHh
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFD-CHAWITEPYSNEYDADQILDIVIKFL 236 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~-~~~wv~~~vs~~~~~~~~~~~i~~~l 236 (824)
-.+++|+|.+|+|||||++.+... ....-. .++|+. .. ....++...+....
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~--~~~~~G~~v~~~~--~e--~~~~~~~~r~~~~~ 87 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQ--WGTAMGKKVGLAM--LE--ESVEETAEDLIGLH 87 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH--HHHTSCCCEEEEE--SS--SCHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH--HHHHcCCeEEEEe--Cc--CCHHHHHHHHHHHH
Confidence 468999999999999999998873 322222 456666 32 24455555555544
No 438
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.49 E-value=0.13 Score=55.49 Aligned_cols=35 Identities=23% Similarity=0.232 Sum_probs=26.5
Q ss_pred HHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 167 ELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 167 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
++.+.|..-.....+++|+|..|+|||||.+.+..
T Consensus 57 ~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 57 AISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 34444433333467999999999999999999988
No 439
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.48 E-value=0.13 Score=49.09 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 568899999999999999998774
No 440
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.47 E-value=0.13 Score=51.50 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
-.+++|+|..|.|||||.+.+..-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 441
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=90.47 E-value=0.36 Score=52.46 Aligned_cols=99 Identities=13% Similarity=0.039 Sum_probs=54.3
Q ss_pred HHHHHHcCCCCeEEEEEEcCCCChHHHHH-HHHhCCccccCCCc-eeEEEECCCCCCCC-HHHHHHHHHHHhCCC-----
Q 003387 168 LLDLLIEGPPQLSVVAILDSIGLDKTAFA-GEAYNSSYVKHYFD-CHAWITEPYSNEYD-ADQILDIVIKFLMPS----- 239 (824)
Q Consensus 168 l~~~L~~~~~~~~vi~I~G~gGvGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~vs~~~~-~~~~~~~i~~~l~~~----- 239 (824)
.++.|..=. +-.-++|.|..|+|||+|| ..|.|. . .-+ .++++- +.+..+ +.++.+++.+.=...
T Consensus 152 aID~l~Pig-rGQR~~Ifg~~g~GKT~l~l~~I~n~--~--~~dv~~V~~~--IGeR~~ev~e~~~~l~~~g~m~~tvvV 224 (513)
T 3oaa_A 152 AVDSMIPIG-RGQRELIIGDRQTGKTALAIDAIINQ--R--DSGIKCIYVA--IGQKASTISNVVRKLEEHGALANTIVV 224 (513)
T ss_dssp HHHHHSCCB-TTCBCEEEESSSSSHHHHHHHHHHTT--S--SSSCEEEEEE--ESCCHHHHHHHHHHHHHHSCSTTEEEE
T ss_pred eeccccccc-cCCEEEeecCCCCCcchHHHHHHHhh--c--cCCceEEEEE--ecCChHHHHHHHHHHhhcCcccceEEE
Confidence 455554311 1236799999999999996 677773 2 233 345666 676543 345666654431111
Q ss_pred ---CCccc----ccccCHHHHHHHHHHhcCCCeEEEEEecCCC
Q 003387 240 ---SRLSE----IMDKNYEMKKIILHEYLMTKRYLIVIDDVWS 275 (824)
Q Consensus 240 ---~~~~~----~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 275 (824)
.+.|. ......-..++.+++ +++.+||++||+..
T Consensus 225 ~atad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dsltr 265 (513)
T 3oaa_A 225 VATASESAALQYLAPYAGCAMGEYFRD--RGEDALIIYDDLSK 265 (513)
T ss_dssp EECTTSCHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEETHHH
T ss_pred EECCCCChHHHHHHHHHHHHHHHHHHh--cCCCEEEEecChHH
Confidence 11110 000111222344443 68999999999964
No 442
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.45 E-value=0.26 Score=56.38 Aligned_cols=42 Identities=12% Similarity=0.183 Sum_probs=36.4
Q ss_pred CCceechhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
+.++|.+..++.+...+..+ ..+.|+|..|+||||||+.+.+
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhc
Confidence 56889988888887777765 3789999999999999999988
No 443
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=90.39 E-value=0.15 Score=52.96 Aligned_cols=38 Identities=13% Similarity=0.004 Sum_probs=26.6
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEE
Q 003387 177 PQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIT 216 (824)
Q Consensus 177 ~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~ 216 (824)
...++|+|+|-||+||||+|..+.. .....=..++-|+
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~--~La~~G~~VlliD 76 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSA--AFSILGKRVLQIG 76 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHH--HHHHCCCeEEEEe
Confidence 3578999999999999999987766 3322212455555
No 444
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=90.29 E-value=0.25 Score=53.91 Aligned_cols=106 Identities=14% Similarity=0.087 Sum_probs=55.1
Q ss_pred HHHHHHcCCCCeEEEEEEcCCCChHHHHH-HHHhCCccc----cCCCc-eeEEEECCCCCCCC-HHHHHHHHHHHhCC--
Q 003387 168 LLDLLIEGPPQLSVVAILDSIGLDKTAFA-GEAYNSSYV----KHYFD-CHAWITEPYSNEYD-ADQILDIVIKFLMP-- 238 (824)
Q Consensus 168 l~~~L~~~~~~~~vi~I~G~gGvGKTtLa-~~v~~~~~~----~~~F~-~~~wv~~~vs~~~~-~~~~~~~i~~~l~~-- 238 (824)
.++.|..=. .-.-++|+|..|+|||+|| ..|.|.... ..+-+ .++++- +.+..+ +.++.+++...=..
T Consensus 152 aID~l~Pig-rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~--IGeR~~Ev~~~~~~~~~~g~m~~ 228 (510)
T 2ck3_A 152 AVDSLVPIG-RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVA--IGQKRSTVAQLVKRLTDADAMKY 228 (510)
T ss_dssp HHHHHSCCB-TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEE--ESCCHHHHHHHHHHHHHTTCGGG
T ss_pred eeccccccc-cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEE--CCCCcHHHHHHHHHHHhcCCccc
Confidence 455554311 1246799999999999994 577774321 02234 355666 666543 44555555542111
Q ss_pred ------CCCcccccccCHHHHHHHHHHhc--CCCeEEEEEecCCCh
Q 003387 239 ------SSRLSEIMDKNYEMKKIILHEYL--MTKRYLIVIDDVWSI 276 (824)
Q Consensus 239 ------~~~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~ 276 (824)
..+.|.....-.......+.+++ +++.+||++||+...
T Consensus 229 tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~ 274 (510)
T 2ck3_A 229 TIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQ 274 (510)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHH
T ss_pred ceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHHH
Confidence 11101000000111122333333 579999999999643
No 445
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.24 E-value=0.12 Score=51.15 Aligned_cols=24 Identities=29% Similarity=0.243 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.-.+|+|.|..|+||||+++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457999999999999999999988
No 446
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.22 E-value=0.14 Score=50.42 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..+|.|.|+.|.||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 447
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.11 E-value=0.22 Score=51.40 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|+|..|.|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 46899999999999999999977
No 448
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=90.09 E-value=0.4 Score=52.72 Aligned_cols=59 Identities=14% Similarity=0.106 Sum_probs=39.4
Q ss_pred HHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHH-HHHHHH
Q 003387 167 ELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDAD-QILDIV 232 (824)
Q Consensus 167 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~-~~~~~i 232 (824)
++++.|..=. .-.-++|.|..|+|||+|++.+.+. .+-+.++++- +.+..+.- ++.+++
T Consensus 216 rvID~l~Pig-kGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~--iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQA-KGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIG--CGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEE-TTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEE--CCSSSSHHHHHHHHT
T ss_pred chhhccCCcc-cCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEE--ecccHHHHHHHHHHH
Confidence 3555554311 1347899999999999999998772 2235677887 77766544 455554
No 449
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.07 E-value=0.16 Score=52.30 Aligned_cols=36 Identities=17% Similarity=0.022 Sum_probs=26.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEE
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIT 216 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~ 216 (824)
.++++|+|.+|+||||++..+.. .....=..+.+++
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~--~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLAL--YYKGKGRRPLLVA 133 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH--HHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEec
Confidence 57999999999999999999887 3332222455555
No 450
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.04 E-value=0.18 Score=47.43 Aligned_cols=26 Identities=15% Similarity=0.051 Sum_probs=22.6
Q ss_pred CCeEEEEEEcCCCChHHHHHHHHhCC
Q 003387 177 PQLSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 177 ~~~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
.....|.|+|.+|+|||||...+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999999875
No 451
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.03 E-value=0.12 Score=50.44 Aligned_cols=23 Identities=9% Similarity=-0.010 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
...|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999977
No 452
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.02 E-value=0.14 Score=55.70 Aligned_cols=37 Identities=30% Similarity=0.316 Sum_probs=27.5
Q ss_pred HHHHHHHHHcC------C-CCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 165 MEELLDLLIEG------P-PQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 165 ~~~l~~~L~~~------~-~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.++|.+++... . ....+|.|+|.+|+||||++..+..
T Consensus 78 ~~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 78 YEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp HHHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHH
T ss_pred HHHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45566666432 1 2357999999999999999988877
No 453
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.02 E-value=0.15 Score=51.64 Aligned_cols=35 Identities=14% Similarity=0.035 Sum_probs=25.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEE
Q 003387 180 SVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIT 216 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~ 216 (824)
++|+|.|-||+||||+|..+.. .....=..++-|+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~--~la~~G~~VlliD 36 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS--GLHAMGKTIMVVG 36 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH--HHHTTTCCEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHH--HHHHCCCcEEEEc
Confidence 6888899999999999988776 3333222455565
No 454
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.98 E-value=0.14 Score=49.03 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999999874
No 455
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=89.91 E-value=0.44 Score=52.32 Aligned_cols=64 Identities=19% Similarity=0.164 Sum_probs=39.5
Q ss_pred HHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHH
Q 003387 165 MEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIK 234 (824)
Q Consensus 165 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~ 234 (824)
...+-+++ .+=..-.++.|.|.+|+||||||..+..+.... .=..++|++ .. .+..++...++.
T Consensus 190 ~~~LD~~~-gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s--~E--~s~~~l~~r~~~ 253 (454)
T 2r6a_A 190 FTELDRMT-SGFQRSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFS--LE--MSAQQLVMRMLC 253 (454)
T ss_dssp CHHHHHHH-SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEE--SS--SCHHHHHHHHHH
T ss_pred cHHHHhhc-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEE--CC--CCHHHHHHHHHH
Confidence 33444444 442335689999999999999999988742221 112577776 33 345666666543
No 456
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.90 E-value=0.16 Score=51.10 Aligned_cols=112 Identities=13% Similarity=0.184 Sum_probs=59.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEE-CCCCCCCCHHHHHHHHHHHhCCCCCcccccccCHHHHHHHH
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIT-EPYSNEYDADQILDIVIKFLMPSSRLSEIMDKNYEMKKIIL 257 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~-~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 257 (824)
-.+++|+|+.|.|||||++.+.. .....+...+++. .++...+... . .++.+ . .... +.......|
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g--~~~~~~~G~I~~~g~~i~~~~~~~-~--~~v~q----~---~~gl-~~~~l~~~l 91 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIEDPIEYVFKHK-K--SIVNQ----R---EVGE-DTKSFADAL 91 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH--HHHHHCCCEEEEEESSCCSCCCCS-S--SEEEE----E---EBTT-TBSCHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH--hCCCCCCCEEEEcCCcceeecCCc-c--eeeeH----H---HhCC-CHHHHHHHH
Confidence 57999999999999999999887 3333223444443 1121111000 0 00000 0 0000 012234566
Q ss_pred HHhcCCCeEEEEEecCCChhhHHHHHhhCCCCCCCcEEEEEechHHHHh
Q 003387 258 HEYLMTKRYLIVIDDVWSIDMWDVIQEILPDNQNGSRVLITLTDIRIII 306 (824)
Q Consensus 258 ~~~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~ 306 (824)
...|..+.=+|++|..-+.+....+.... ..|.-|++||-+.++..
T Consensus 92 a~aL~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~~~ 137 (261)
T 2eyu_A 92 RAALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTAID 137 (261)
T ss_dssp HHHHHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSHHH
T ss_pred HHHHhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchHHH
Confidence 66665566688899997654433333221 23667888887765443
No 457
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.88 E-value=0.16 Score=46.34 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
.-|.|+|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
No 458
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.87 E-value=0.15 Score=50.00 Aligned_cols=21 Identities=14% Similarity=0.104 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 003387 181 VVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999977
No 459
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=89.85 E-value=0.16 Score=52.05 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.++|+|.|.||+||||+|..+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~ 24 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA 24 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH
Confidence 47899999999999999988776
No 460
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.82 E-value=0.15 Score=49.61 Aligned_cols=21 Identities=14% Similarity=-0.016 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 003387 181 VVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999977
No 461
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.76 E-value=0.2 Score=47.25 Aligned_cols=24 Identities=8% Similarity=0.111 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
...|+|+|.+|+|||||.+.+.+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999874
No 462
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.70 E-value=0.15 Score=52.87 Aligned_cols=23 Identities=9% Similarity=0.209 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.++|.|+|+.|+||||||..+..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999988
No 463
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=89.51 E-value=0.26 Score=54.51 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=20.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..++|.|+|.+|+||||++..+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999998875
No 464
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=89.46 E-value=0.28 Score=51.50 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=26.7
Q ss_pred HHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 167 ELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 167 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+++-+.-.-....+++|+|..|+|||||.+.+..
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34444443334578999999999999999999874
No 465
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.44 E-value=0.18 Score=52.10 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
++|.|+|+.|+||||||+.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 466
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.37 E-value=0.18 Score=49.94 Aligned_cols=24 Identities=17% Similarity=0.034 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
...+|+|+|+.|.||||+++.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999887
No 467
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.36 E-value=0.19 Score=46.69 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
.--|.|+|.+|+|||||.+.+.+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 446899999999999999999875
No 468
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.30 E-value=0.18 Score=51.94 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 469
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=89.25 E-value=0.28 Score=46.94 Aligned_cols=34 Identities=15% Similarity=-0.021 Sum_probs=24.7
Q ss_pred HHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 003387 168 LLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 168 l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
+++.+.-..... .|+|+|.+|+|||||.+.+.++
T Consensus 15 ~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 15 VLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 445443333234 5789999999999999999874
No 470
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.22 E-value=0.18 Score=51.13 Aligned_cols=21 Identities=14% Similarity=0.425 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 003387 181 VVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.++|+|..|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999886
No 471
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.19 E-value=0.16 Score=50.18 Aligned_cols=23 Identities=17% Similarity=0.039 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
...|.|.|+.|+||||+|+.+.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999987
No 472
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=89.18 E-value=0.28 Score=51.66 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=25.6
Q ss_pred HHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 168 LLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 168 l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
+.+-+........+|+|+|.+|+||||++..+..
T Consensus 45 ~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 45 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4433333334578999999999999999999864
No 473
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.17 E-value=0.44 Score=46.25 Aligned_cols=23 Identities=13% Similarity=-0.035 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-..|.|.|+.|+||||+++.+.+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 474
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.15 E-value=0.57 Score=59.93 Aligned_cols=108 Identities=17% Similarity=0.001 Sum_probs=67.8
Q ss_pred ceechhhHHHHHHHHH-cCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHh
Q 003387 158 TVGLDDRMEELLDLLI-EGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFL 236 (824)
Q Consensus 158 ~vGr~~~~~~l~~~L~-~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l 236 (824)
+.+...-...|-.+|. .+=..-+++-|+|.+|+||||||.++... ....=..++|++ ....++... ++.+
T Consensus 361 ~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~--~a~~G~~vlyis--~E~s~~~~~-----a~~l 431 (2050)
T 3cmu_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFID--AEHALDPIY-----ARKL 431 (2050)
T ss_dssp CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEEC--TTSCCCHHH-----HHHT
T ss_pred CceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEE--cCCCHHHHH-----HHHc
Confidence 4455555566666665 33234579999999999999999998873 333324688998 666666542 5556
Q ss_pred CCCCCc-ccccccCHHHHHHHHHHhcC-CCeEEEEEecCC
Q 003387 237 MPSSRL-SEIMDKNYEMKKIILHEYLM-TKRYLIVIDDVW 274 (824)
Q Consensus 237 ~~~~~~-~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~ 274 (824)
+...+. .-.+..+.++....+.+..+ .+--+||+|-+.
T Consensus 432 Gvd~~~L~I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 432 GVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp TCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred CCCHHHeEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHH
Confidence 543211 00233456666666665443 355699999985
No 475
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.09 E-value=0.29 Score=50.26 Aligned_cols=24 Identities=8% Similarity=0.166 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
.-.+++|+|..|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 356899999999999999999987
No 476
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=88.96 E-value=0.67 Score=50.70 Aligned_cols=73 Identities=21% Similarity=0.056 Sum_probs=45.7
Q ss_pred echhhHHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEECCCCCCCCHHHHHHHHHHHhCC
Q 003387 160 GLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWITEPYSNEYDADQILDIVIKFLMP 238 (824)
Q Consensus 160 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~ 238 (824)
|...-...+-+++ .+=..-.++.|.|.+|+||||+|..+..+.... .=..++|++ . .-+..++...++.....
T Consensus 182 ~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~s--l--E~~~~~l~~R~~~~~~~ 254 (444)
T 2q6t_A 182 GVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYS--L--EMPAAQLTLRMMCSEAR 254 (444)
T ss_dssp -CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEE--S--SSCHHHHHHHHHHHHTT
T ss_pred cccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEE--C--CCCHHHHHHHHHHHHcC
Confidence 4444445555555 553345689999999999999999887732211 113577776 3 34566777777655443
No 477
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=88.96 E-value=0.19 Score=46.83 Aligned_cols=23 Identities=13% Similarity=0.055 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999874
No 478
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.95 E-value=0.17 Score=51.62 Aligned_cols=23 Identities=22% Similarity=0.120 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.++.|+|.+|+|||||+..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999998875
No 479
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=88.94 E-value=0.2 Score=46.11 Aligned_cols=22 Identities=27% Similarity=0.234 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 003387 181 VVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
-|.|+|.+|+|||||.+.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999998764
No 480
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=88.92 E-value=0.32 Score=51.23 Aligned_cols=23 Identities=9% Similarity=0.108 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|+|+.|.|||||.+.+..
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHhc
Confidence 46899999999999999999987
No 481
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.92 E-value=0.22 Score=51.12 Aligned_cols=23 Identities=22% Similarity=0.137 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..+|.|+|+.|+||||||..+..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999999987
No 482
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.92 E-value=0.19 Score=46.00 Aligned_cols=22 Identities=14% Similarity=0.258 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 003387 181 VVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
-|.|+|.+|+|||||+..+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 483
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=88.89 E-value=0.31 Score=51.25 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|+|+.|.|||||.+.+..
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 35899999999999999999987
No 484
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.86 E-value=0.2 Score=46.09 Aligned_cols=24 Identities=4% Similarity=0.076 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
.--|.|+|.+|+|||||+..+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 446789999999999999998764
No 485
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=88.85 E-value=0.2 Score=51.24 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
-.+++|+|..|.|||||.+.+..-
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 468999999999999999999873
No 486
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.74 E-value=0.11 Score=53.24 Aligned_cols=23 Identities=9% Similarity=0.141 Sum_probs=18.1
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..+|+|.|..|+||||+|+.+.+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999876
No 487
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.73 E-value=0.22 Score=48.12 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 003387 181 VVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 181 vi~I~G~gGvGKTtLa~~v~~ 201 (824)
+|.|.|++|+||||.|+.+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999987
No 488
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.71 E-value=0.21 Score=46.06 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
--|.|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999874
No 489
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.71 E-value=0.31 Score=45.35 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
....|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998774
No 490
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.71 E-value=0.2 Score=47.35 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
--|.|+|.+|+|||||+..+.+.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999999764
No 491
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=88.70 E-value=0.43 Score=48.04 Aligned_cols=38 Identities=16% Similarity=0.167 Sum_probs=28.5
Q ss_pred HHHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCC
Q 003387 165 MEELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 165 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
+.++.+.+.......-.|+|+|..|+|||||...+...
T Consensus 22 l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 22 LIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred HHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 33444455554445678899999999999999999875
No 492
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.48 E-value=0.2 Score=49.77 Aligned_cols=36 Identities=17% Similarity=0.113 Sum_probs=26.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCCccccCCCceeEEEE
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIT 216 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~~~~~~~F~~~~wv~ 216 (824)
-.++.|+|.+|+||||||..+... ....=..++|++
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~ 58 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVA 58 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE
Confidence 468999999999999998877652 222223577777
No 493
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.47 E-value=0.2 Score=46.01 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
..-|.|+|.+|+|||||...+.+.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999998764
No 494
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=88.45 E-value=0.23 Score=46.32 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhCC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
..--|.|+|..|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999875
No 495
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.44 E-value=0.21 Score=54.18 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHHhC
Q 003387 178 QLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 178 ~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
...+|.|+|+.|+||||+|+.+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999987
No 496
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=88.41 E-value=0.24 Score=45.51 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=20.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhCC
Q 003387 180 SVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 180 ~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
--|.|+|.+|+|||||.+.+.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998764
No 497
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=88.40 E-value=0.38 Score=56.83 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=37.1
Q ss_pred CCceechhhHHHHHHHHHcC-------CCCeEEEEEEcCCCChHHHHHHHHhC
Q 003387 156 RDTVGLDDRMEELLDLLIEG-------PPQLSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 156 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
..++|.+..++.+...+... ......+-++|..|+|||++|+.+.+
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 45889999998888877532 12345789999999999999999988
No 498
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=88.37 E-value=0.34 Score=50.89 Aligned_cols=23 Identities=26% Similarity=0.182 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYN 201 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~ 201 (824)
-.+++|+|+.|.|||||.+.+..
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHT
T ss_pred CCEEEEECCCCccHHHHHHHHHc
Confidence 35899999999999999999987
No 499
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=88.32 E-value=0.47 Score=47.98 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=27.9
Q ss_pred HHHHHHHHcCCCCeEEEEEEcCCCChHHHHHHHHhCCc
Q 003387 166 EELLDLLIEGPPQLSVVAILDSIGLDKTAFAGEAYNSS 203 (824)
Q Consensus 166 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLa~~v~~~~ 203 (824)
.++.+.+.......-.|.|+|.+|+|||||...+.+..
T Consensus 26 ~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 26 LELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp HHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred HHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 33444444444446788999999999999999998753
No 500
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=88.23 E-value=0.25 Score=45.55 Aligned_cols=24 Identities=17% Similarity=0.050 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCChHHHHHHHHhCC
Q 003387 179 LSVVAILDSIGLDKTAFAGEAYNS 202 (824)
Q Consensus 179 ~~vi~I~G~gGvGKTtLa~~v~~~ 202 (824)
.--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456899999999999999998764
Done!