BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003388
(824 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2
SV=1
Length = 818
Score = 1108 bits (2867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 545/806 (67%), Positives = 658/806 (81%), Gaps = 21/806 (2%)
Query: 1 MAVDKDKPQDE--ASIFRFCKIILGWDYFRLVKESQERNDKNSKKVDRGKLGLREVKDTY 58
MA+D K Q+E +S+ RF IILGWDY +L KE++ +N K+SK+ L VK+TY
Sbjct: 1 MAIDNGKLQEEEASSVTRFYNIILGWDYKQLTKENERKNRKDSKE------KLNVVKNTY 54
Query: 59 KDVDDYLATFEPLLFEEVKAQIIQKKDEEEVQEWKLRLVMECGEADGFHLPSVTYEADEV 118
KDVDDY TFEPLLFEEVKAQI+Q KD EE K+RLVMEC E +GFH VTYE +E
Sbjct: 55 KDVDDYFETFEPLLFEEVKAQILQNKDGEEASVCKMRLVMECNEGEGFHFLLVTYEHEED 114
Query: 119 ESISPNDLLLLSKEEFKEGSTFPTTYAFALVEHCQANLLRLRMYLAGEVIHINKDAVKS- 177
E ++ NDLLLLSKEE K G++FP++Y FA+VEH Q NLLRLRMYLA +++ I K+ S
Sbjct: 115 EYLAQNDLLLLSKEEVK-GNSFPSSYGFAVVEHRQNNLLRLRMYLAEDIVQITKNTKSSR 173
Query: 178 -----QRLLNIHSLITSSVSAVEKRLFSLKICSLSTIAREYLALRSVGSLPFKDLILSAS 232
Q L N+ SLITSS S ++KR+FSLK+C LSTI REY+ALRSV SLPFKDLI +A+
Sbjct: 174 TKSFIQALSNMRSLITSSASPIDKRVFSLKLCGLSTIIREYIALRSVSSLPFKDLIFTAA 233
Query: 233 EKSSGSQDQSWKIPGLLHEYIKENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGL 292
EKS G D++WKI G L+E+ EN N SQ EAI GL RK+FVLIQGPPGTGKTQTIL +
Sbjct: 234 EKSCGFGDEAWKISGPLNEFFNENLNKSQKEAIDVGLSRKSFVLIQGPPGTGKTQTILSI 293
Query: 293 LSAILHATPARVHSKGGLREIKRGPELPMHEKYNHWGRASPWLVGANPRDNIMPIDGDDG 352
L AI+HATPARV SKG E+KRG ++ + EKYNHWGRASPW++G NPRD IMP DGDDG
Sbjct: 294 LGAIMHATPARVQSKGTDHEVKRGIQMTIQEKYNHWGRASPWILGVNPRDAIMPEDGDDG 353
Query: 353 FFPTTGNELKPEVVNSSRRYRVRVLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVR 412
FFPT+GNELKPEVVN+SR+YR+RVLVCAPSNSALDEIVLRLL++G+RDEN ++YTPKIVR
Sbjct: 354 FFPTSGNELKPEVVNASRKYRLRVLVCAPSNSALDEIVLRLLSSGLRDENAQTYTPKIVR 413
Query: 413 IGLKAHHSVNSVAIDHLVEQKRDDSAADKQKHGATRKDRDSIRSAILNEAVIVCSTLSFS 472
IGLKAHHSV SV++DHLV QKR SA DK K G T D DSIR+AIL EA IV +TLSFS
Sbjct: 414 IGLKAHHSVASVSLDHLVAQKR-GSAIDKPKQGTTGTDIDSIRTAILEEAAIVFATLSFS 472
Query: 473 GSALLSKLNHGFDVVIIDEAAQAVEPATLVPLATGCKQVFLVGDPVQLPATVISPVAEHL 532
GSALL+K N GFDVVIIDEAAQAVEPATL+PLAT CKQVFLVGDP QLPATVIS VA+
Sbjct: 473 GSALLAKSNRGFDVVIIDEAAQAVEPATLIPLATRCKQVFLVGDPKQLPATVISTVAQDS 532
Query: 533 GYGTSLFKRLQRAGYPVKMLKTQYRMHPEVRSFPSREFYDEALEDGSDVEDYTTRDWHEY 592
GYGTS+F+RLQ+AGYPVKMLKTQYRMHPE+RSFPS++FY+ ALEDGSD+E TTRDWH+Y
Sbjct: 533 GYGTSMFERLQKAGYPVKMLKTQYRMHPEIRSFPSKQFYEGALEDGSDIEAQTTRDWHKY 592
Query: 593 RCFGPFSFFDIHEGKESQ-PAGSGSWINIDEVDFVLLLFHKLISMYPQLKSSSQLAIISP 651
RCFGPF FFDIHEGKESQ P +GS +N+DEV+FVLL++H+L++MYP+LKSSSQLAIISP
Sbjct: 593 RCFGPFCFFDIHEGKESQHPGATGSRVNLDEVEFVLLIYHRLVTMYPELKSSSQLAIISP 652
Query: 652 YRHQVKQFQERFKETFGVESQKVVDITTVDGCQGREKDVAIFSCVRASDKKSIGFLADYR 711
Y +QVK F++RFKE FG E++KVVDI TVDG QGREKDVAIFSCVRA++ IGFL++ R
Sbjct: 653 YNYQVKTFKDRFKEMFGTEAEKVVDINTVDGFQGREKDVAIFSCVRANENGQIGFLSNSR 712
Query: 712 RMNVGITRAKSSILVVGCASTLREDKHWNNLVKSAEKQDCLFRVSKPYASFFSDENLESM 771
RMNVGITRAKSS+LVVG A+TL+ D W NL++SAE+++ LF+VSKP +FFS+ENLE+M
Sbjct: 713 RMNVGITRAKSSVLVVGSAATLKSDPLWKNLIESAEQRNRLFKVSKPLNNFFSEENLETM 772
Query: 772 RKNATTDNVQGADGHVPHDDETMHYA 797
+ T++++ D + ++DE++ A
Sbjct: 773 K---LTEDMEIPDAPL-YEDESLPVA 794
>sp|Q86AS0|Y4399_DICDI Probable helicase DDB_G0274399 OS=Dictyostelium discoideum
GN=DDB_G0274399 PE=3 SV=1
Length = 967
Score = 414 bits (1064), Expect = e-114, Method: Compositional matrix adjust.
Identities = 251/644 (38%), Positives = 351/644 (54%), Gaps = 56/644 (8%)
Query: 142 TTYAFALVEHCQANLLRLRMYLAGEVIHINKDAVKSQRLLNIHSLITSSVSAVEKRLFSL 201
T + VEH ++++ Y+ G +K R + L+ + ++
Sbjct: 236 TLHLIGTVEHLDNGGIKVKFYVKG---------IKGDRARQVSLLLRYEID-----WWTT 281
Query: 202 KICSLSTIAREYLALRSVGSLPFKDLILSASEKSSGSQDQSWKIPGLLHEYIKENHNASQ 261
K+C+LST+ RE+ AL F ++ + G KIP LLH+ +N SQ
Sbjct: 282 KLCNLSTLQREFAALYQCSQSNFMKTLMMRDD--DGEDGIVMKIPPLLHDQFSSTYNDSQ 339
Query: 262 LEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAILHATPARVHSKGGLR---EIKRGPE 318
L A+ L A LIQGPPGTGKT ILGL+S +LH+T GG + + E
Sbjct: 340 LNALTSALEGNAITLIQGPPGTGKTHVILGLISVLLHSTIVPKVKSGGNNLGDHLLKDRE 399
Query: 319 LPMHEKYNHWGRASPWLVGANP--RDNIMPIDGDDGFFPTTGNELKPEVVNSSR------ 370
L M EK + W + PW P RDN ID D F + K ++ R
Sbjct: 400 LSMAEKRDLWNISQPWFNKEFPHIRDNYELIDYD---FEERDQKRKRDLWRKLRDTGSVK 456
Query: 371 --RYRVRVLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVRIGLKAHHSVNSVAIDH 428
+ R+L+CAPSN A+DEIV RL+ G+ + + R Y P +VR+G +H V SV++D+
Sbjct: 457 GGSTKRRILLCAPSNGAVDEIVSRLIRDGLLNADGRKYNPNLVRVGPGSHSDVESVSLDY 516
Query: 429 LVEQKRD-------------DSAADKQKHGATRKDRDSIRSAILNEAVIVCSTLSFSGSA 475
+V ++ +AA + +D SIR+ +L+EA IV +TLSFSG++
Sbjct: 517 MVRCRQQLMNSNSAIPSSSASTAAATSGSSRSTQDTSSIRTLVLDEADIVATTLSFSGAS 576
Query: 476 LLSKLNHGFDVVIIDEAAQAVEPATLVPLATGCKQVFLVGDPVQLPATVISPVAEHLGYG 535
LL+K+ GFD+VIIDEAAQAVE +TL+P+ GCK+V LVGDP QLPAT+ISP+A Y
Sbjct: 577 LLTKMAGGFDIVIIDEAAQAVETSTLIPIQHGCKKVVLVGDPKQLPATIISPLAIKYKYD 636
Query: 536 TSLFKRLQRAGYPVKMLKTQYRMHPEVRSFPSREFYDEALEDGSDVEDYTTRDWHEYRCF 595
SLF+RLQ P ML TQYRMH +R+FPSR FY + L DG ++ T +H F
Sbjct: 637 QSLFQRLQEKNSP-HMLTTQYRMHSLIRAFPSRHFYQDLLLDGPNIPSRATH-YHSNPFF 694
Query: 596 GPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISMYPQLKSSSQLAIISPYRHQ 655
GP F+D+ E++P G GS N E + LF +YP +S++ IISPYR Q
Sbjct: 695 GPLVFYDLSWSTETKPGG-GSVFNEHECKMAMYLFQLFTKVYPDEDFASRIGIISPYRQQ 753
Query: 656 VKQFQERFKETFGVESQKVVDITTVDGCQGREKDVAIFSCVRA--SDKKSIGFLADYRRM 713
V +E FK G+ I TVDG QGRE+++ IFSCVRA + IGFL+D RRM
Sbjct: 754 VLALREIFKNYPGIS------IDTVDGFQGREREIIIFSCVRAPVEEGAGIGFLSDVRRM 807
Query: 714 NVGITRAKSSILVVGCASTLREDKHWNNLVKSAEKQDCLFRVSK 757
NV +TR +SS+L++G L +K WN L++ + L V+K
Sbjct: 808 NVALTRPRSSLLILGNTKALSINKDWNELIQHTQNNQQLIPVTK 851
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 19/121 (15%)
Query: 14 IFRFCKIILGWDYFRLVKESQERNDKNSKKVDRGKLGLREVKDTYKDVDDYLATFEPLLF 73
I RF K IL WD L + +E L+ VK ++ + +DY+ T+EPLLF
Sbjct: 41 IDRFYKHILTWDASDLSPKEKE---------------LKPVKVSFNNEEDYITTYEPLLF 85
Query: 74 EEVKAQI---IQKKDEEEVQEWKLRLVMECGEADGFHLPS-VTYEADEVESISPNDLLLL 129
EE +AQ+ I++ ++++ E L V E + F + V E + NDL+++
Sbjct: 86 EECRAQLERSIEEGEKDDTSEPTLSRVRYISEVNDFLVVGLVMAENVNIFQFHDNDLIMI 145
Query: 130 S 130
S
Sbjct: 146 S 146
>sp|Q00416|SEN1_YEAST Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SEN1 PE=1 SV=2
Length = 2231
Score = 303 bits (775), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 232/784 (29%), Positives = 376/784 (47%), Gaps = 98/784 (12%)
Query: 19 KIILGWDYFRLVKESQERNDKNSKKVDRGKLG-LREVKDTYKDVDDYLATFEPLLFEEVK 77
+IIL WDY R NS+ D +G +VKD + DY +PLL E
Sbjct: 1118 EIILQWDYTR-----------NSEYPDDEPIGNYSDVKDFFNSPADYQKVMKPLLLLESW 1166
Query: 78 AQIIQKKDEEEVQEWKLRLVMECGEADGFHL-PSVTYEADEVESISPNDLLLLSK-EEFK 135
+ +D E+ + + + + +D + + SV + + IS +DL++++ +F+
Sbjct: 1167 QGLCSSRDREDYKPFSIIVGNRTAVSDFYDVYASVAKQVIQDCGISESDLIVMAYLPDFR 1226
Query: 136 EGSTFPTTYAFALVEH-CQANLLRLRMYLAGEV-----IHINKDAVKSQRLLNIHSLITS 189
++ F +H C A + L+ G V IH N HS S
Sbjct: 1227 PDKRL-SSDDFKKAQHTCLAKVRTLKNTKGGNVDVTLRIHRN------------HSF--S 1271
Query: 190 SVSAVEKRLFSLKICSLSTIAREYLALRSVGSLPFKDLILSASEKSSGSQDQSWKIPGLL 249
+ ++ +K+ ++TI REY L + IL A + D +
Sbjct: 1272 KFLTLRSEIYCVKVMQMTTIEREYSTLEGLEYYDLVGQILQAKPSPPVNVDAAEI----- 1326
Query: 250 HEYIKENH--NASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAILHATPARVHSK 307
E +K+++ N SQ EAI + ++ F LIQGPPGTGKT+TILG++ L A +
Sbjct: 1327 -ETVKKSYKLNTSQAEAIVNSVSKEGFSLIQGPPGTGKTKTILGIIGYFLSTKNASSSNV 1385
Query: 308 GGLREIKRGPELPMHEKYNHWGRASPWLVGANPRDNIMPIDGDDGFFPTTGNELKPEVVN 367
+ K K +P +N + + + G + G++ KP++V
Sbjct: 1386 IKVPLEKNSSNTEQLLKKQKILICAP----SNAAVDEICLRLKSGVYDKQGHQFKPQLV- 1440
Query: 368 SSRRYRVRVLVCAPSNSALDEIVLRLLNTGIRDENIRS---------------------- 405
R R V+ A + L+E+V + + G R+ IR+
Sbjct: 1441 --RVGRSDVVNVAIKDLTLEELVDKRI--GERNYEIRTDPELERKFNNAVTKRRELRGKL 1496
Query: 406 -----------YTPKIVRIGLKAHHSVNSVAIDHLVEQKRDDSAADKQKHGATRKDRD-- 452
T I ++ LK + ++ + D ++K+ ++RD
Sbjct: 1497 DSESGNPESPMSTEDISKLQLKIRE------LSKIINELGRDRDEMREKNSVNYRNRDLD 1550
Query: 453 --SIRSAILNEAVIVCSTLSFSGSALLSKLNHGFDVVIIDEAAQAVEPATLVPLATGCKQ 510
+ ++ IL + I+CSTLS S +L+ + FD VIIDEA Q E ++++PL G K+
Sbjct: 1551 RRNAQAHILAVSDIICSTLSGSAHDVLATMGIKFDTVIIDEACQCTELSSIIPLRYGGKR 1610
Query: 511 VFLVGDPVQLPATVISPVAEHLGYGTSLFKRLQRAGYPVKMLKTQYRMHPEVRSFPSREF 570
+VGDP QLP TV+S A + Y SLF R+++ P +L QYRMHP + FPS EF
Sbjct: 1611 CIMVGDPNQLPPTVLSGAASNFKYNQSLFVRMEKNSSPY-LLDVQYRMHPSISKFPSSEF 1669
Query: 571 YDEALEDGSDVEDYTTRDWHEYRCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLF 630
Y L+DG ++ R WH+ P+ FFDI G++ Q A + S+ N++E+ + L
Sbjct: 1670 YQGRLKDGPGMDILNKRPWHQLEPLAPYKFFDIISGRQEQNAKTMSYTNMEEIRVAIELV 1729
Query: 631 HKLISMY-PQLKSSSQLAIISPYRHQVKQFQERFKETFGVESQKVVDITTVDGCQGREKD 689
L + ++ + ++ IISPYR Q+++ ++ F FG K +D T+DG QG+EK+
Sbjct: 1730 DYLFRKFDNKIDFTGKIGIISPYREQMQKMRKEFARYFGGMINKSIDFNTIDGFQGQEKE 1789
Query: 690 VAIFSCVRASD-KKSIGFLADYRRMNVGITRAKSSILVVGCASTLREDKHWNNLVKSAEK 748
+ + SCVRA D K S+GFL D+RRMNV +TRAK+SI V+G +L + K W +L++ A+
Sbjct: 1790 IILISCVRADDTKSSVGFLKDFRRMNVALTRAKTSIWVLGHQRSLAKSKLWRDLIEDAKD 1849
Query: 749 QDCL 752
+ CL
Sbjct: 1850 RSCL 1853
>sp|Q92355|SEN1_SCHPO Helicase sen1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sen1 PE=1 SV=1
Length = 1687
Score = 302 bits (773), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 227/739 (30%), Positives = 351/739 (47%), Gaps = 96/739 (12%)
Query: 53 EVKDTYKDVDDYLATFEPLLFEEVKAQIIQKKDEEEVQEWKLRLVMECGEADGFHLPSVT 112
++ D++K V+ Y+ +P++F E +QI Q KL L E +V
Sbjct: 946 KIIDSFKTVEHYMEVLQPMIFMECWSQI---------QSTKLDLKFSPVEGIMVERTAVN 996
Query: 113 YEADEVESISPNDL------------LLLSKEEFKEGSTFPTTYAFALVEHC--QAN--L 156
D S++P DL L +KE+ S+ FA VE Q N L
Sbjct: 997 NFVDIGVSVAPKDLYGYPLYDTEVVSLAFNKED---ASSMKGLCCFAKVERIVRQTNGVL 1053
Query: 157 LRLRMYLAGEVIHINKDAVKSQRLLNIHSLITSSVSAVEKRLFSLKICSLSTIAREYLAL 216
+ LR + E+++ + L+ LK+ +L+T R+Y +
Sbjct: 1054 VVLRTLPSMEILNKLQGNCA---------------------LWFLKLTNLATFTRQYAGI 1092
Query: 217 RSVGSLPFKDLILSASEKSSGSQDQSWKIPGLLHEYIKENHNASQLEAIHEGLLRKAFVL 276
R + D I+ A S + S +I + Y N Q +AI L F L
Sbjct: 1093 RGLPYFHLADDIIRARPCSQPVKHSSSEIKAAMKRY---QVNEPQAKAIMCALDNNGFTL 1149
Query: 277 IQGPPGTGKTQTILGLLSAIL------HATPARVHSKGG-------------------LR 311
IQGPPGTGKT+TI+G++SA+L H T SK L
Sbjct: 1150 IQGPPGTGKTKTIIGIISALLVDLSRYHITRPNQQSKSTESKQQILLCAPSNAAVDEVLL 1209
Query: 312 EIKRGPELPMHEKY--NHWGRASPWLVGANPRDNIMPIDGDDGFFPTTGNELKPEVVNSS 369
+KRG L EKY +P + + RD + + + +
Sbjct: 1210 RLKRGFLLENGEKYIPRVVRIGNPETINVSVRDLSLEYQTEKQLLEVNQGAIDLGSLQEL 1269
Query: 370 RRYRVRVLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVRIGLKAHHSVNSVAIDHL 429
R+R C L++ + + R +G + + +N +L
Sbjct: 1270 TRWRDTFYDCIQKIEELEKQI----------DVARDVAEDTKSLGKELQNKINE---KNL 1316
Query: 430 VEQKRDDSAADK-QKHGATRKDRDSIRSAILNEAVIVCSTLSFSGSALLSKLNHGFDVVI 488
EQK ++ + K+ R + AIL +A +VC+TLS SG L++ + F VI
Sbjct: 1317 AEQKVEELQSQSFTKNKEVDLLRKKAQKAILKQADVVCATLSGSGHDLVAHSSLNFSTVI 1376
Query: 489 IDEAAQAVEPATLVPLATGCKQVFLVGDPVQLPATVISPVAEHLGYGTSLFKRLQRA-GY 547
IDEAAQAVE T++PL G K+ LVGDP QLP TV+S A L Y SLF R+Q+
Sbjct: 1377 IDEAAQAVELDTIIPLRYGAKKCILVGDPNQLPPTVLSKKAASLNYSQSLFVRIQKNFSN 1436
Query: 548 PVKMLKTQYRMHPEVRSFPSREFYDEALEDGSDVEDYTTRDWHEYRCFGPFSFFDIHEGK 607
+ +L QYRMHP++ FPS++FYD LEDG ++ + T + WH F + FD+ GK
Sbjct: 1437 QMCLLSIQYRMHPDISHFPSKKFYDSRLEDGDNMAEKTQQVWHVNPKFTQYRLFDVR-GK 1495
Query: 608 ESQPAGSGSWINIDEVDFVLLLFHKLISMYPQLKSSSQLAIISPYRHQVKQFQERFKETF 667
E + + + S N++EV++++ + +L++ +P + + ++ +I+PYR Q+ + + FK +
Sbjct: 1496 E-RTSNTMSTYNLEEVEYLVNMVDELLNKFPDVNFTGRIGVITPYRSQLHELRRAFKVKY 1554
Query: 668 GVESQKVVDITTVDGCQGREKDVAIFSCVRASDKKSIGFLADYRRMNVGITRAKSSILVV 727
G +DI TVDG QG+EKD+ FSCV++ K IGFL D+RR+NV +TRA+SS+L++
Sbjct: 1555 GKSFMSTIDIQTVDGFQGQEKDIIFFSCVKSYSKHGIGFLRDFRRLNVALTRARSSLLII 1614
Query: 728 GCASTLREDKHWNNLVKSA 746
G TL+ D W +LV A
Sbjct: 1615 GNMETLKTDDLWGSLVDDA 1633
>sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC29A10.10c PE=3 SV=1
Length = 1944
Score = 270 bits (691), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 160/443 (36%), Positives = 244/443 (55%), Gaps = 73/443 (16%)
Query: 375 RVLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVRIGLKAHHSVNSVAI---DHLVE 431
++L+CAPSN+A+DEI+LR+ G+ D + PK++R+G SV++ + +++
Sbjct: 1333 KILICAPSNAAIDEILLRI-KAGVYDHEGIKFFPKVIRVGFGDSISVHAKEFTLEEQMIK 1391
Query: 432 Q------KRDDSAAD----KQKHGATRKDRDSIR------------SAIL---------- 459
Q K+D A + ++K+ + K RDS+R S+IL
Sbjct: 1392 QMELTNLKKDQEANNSSDTRKKYDSIIKKRDSLREDLEKFRSTGKNSSILEAQLREITKQ 1451
Query: 460 ----------------------------------NEAVIVCSTLSFSGSALLSKLNHGFD 485
EA IVC+TLS SG LL F
Sbjct: 1452 KNMLEQSLDDMRERQRSTNRNLDVLKKQIQNQLLQEADIVCATLSASGHELLLNAGLTFR 1511
Query: 486 VVIIDEAAQAVEPATLVPLATGCKQVFLVGDPVQLPATVISPVAEHLGYGTSLFKRL-QR 544
VIIDEAAQAVE ++++PL GC+ +VGDP QLP TV+S + GY SL+ R+ ++
Sbjct: 1512 TVIIDEAAQAVELSSIIPLKYGCESCVMVGDPNQLPPTVLSKTSAKFGYSQSLYVRMFKQ 1571
Query: 545 AGYPVKMLKTQYRMHPEVRSFPSREFYDEALEDGSDVEDYTTRDWHEYRCFGPFSFFDIH 604
+L QYRM+PE+ FPS+ FY+ L DG ++ T+R WHE G + FF++H
Sbjct: 1572 HNESACLLSIQYRMNPEISRFPSKFFYNSKLLDGPNMSAVTSRPWHEDPQLGIYRFFNVH 1631
Query: 605 EGKESQPAGSGSWINIDEVDFVLLLFHKLISMYPQLKSSSQLAIISPYRHQVKQFQERFK 664
G E+ + S S N++E F+LLL+ +LI Y + ++ +++PYR QV+Q + +F+
Sbjct: 1632 -GTEAF-SNSKSLYNVEEASFILLLYERLIQCYLNIDFEGKIGVVTPYRSQVQQLRSQFQ 1689
Query: 665 ETFGVESQKVVDITTVDGCQGREKDVAIFSCVRASDKKSIGFLADYRRMNVGITRAKSSI 724
+G K +DI TVDG QG+EKD+ IFSCVR+S IGFL D RR+NV +TRAKSS+
Sbjct: 1690 RKYGSIIFKHLDIHTVDGFQGQEKDIIIFSCVRSSMSGGIGFLQDLRRLNVALTRAKSSL 1749
Query: 725 LVVGCASTLREDKHWNNLVKSAE 747
+VG + L ++ + +L++ A+
Sbjct: 1750 YIVGNSKPLMQEDIFYSLIEDAK 1772
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 126/286 (44%), Gaps = 35/286 (12%)
Query: 17 FCKIILGWDYFRLVKESQERNDKNSKKVDRGKLGLREVKDTYKDVDDYLATFEPLLFEEV 76
F K+ILGW+ +S ++ + K TY D + Y F+P+LF E
Sbjct: 1062 FYKVILGWNPL-----------ADSFSASNVEMQCVQAKFTYNDSNAYEKVFKPMLFHEC 1110
Query: 77 KAQIIQKKDEEEVQEWKLRLVMEC-GEADGF-HLPSVTYEADEVESISPNDLLLLSKEEF 134
AQ+ K EE Q + L++ D F + + EV +S D+ LLSK +
Sbjct: 1111 WAQV--KSAVEEKQYPPIDLILNTRSTVDNFVDIYFTSCSPTEVSFLSDTDICLLSKSQS 1168
Query: 135 KEGSTFPTTYAFALVEHCQANLLRLRMYLAGEVIHINKDAVKSQRLLNIHSLITSSVSAV 194
+ P ++ ++ I K++++ +NI S I A
Sbjct: 1169 SGDTNNPKSFQLCKIQS----------------ISRKKESLELCLRMNIES-IDLQEYAP 1211
Query: 195 EKRLFSLKICSLSTIAREYLALRSVGSLPFKDLILSASEKSSGSQDQSWKIPGLLHEYIK 254
R + K+ + +T RE+ AL+S+ LP IL A+ S K ++ Y
Sbjct: 1212 NIRFTAQKLFNATTSLREFAALKSLRHLPLSQRILDANVTRLPSNFTDDKKQKIMKSY-- 1269
Query: 255 ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAILHAT 300
N Q AI+ + F LIQGPPGTGKT+TILG++ A+L ++
Sbjct: 1270 -GVNEPQAYAIYASSVNDGFTLIQGPPGTGKTKTILGMIGAVLTSS 1314
>sp|A2AKX3|SETX_MOUSE Probable helicase senataxin OS=Mus musculus GN=Setx PE=2 SV=1
Length = 2646
Score = 203 bits (517), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 222/800 (27%), Positives = 358/800 (44%), Gaps = 101/800 (12%)
Query: 13 SIF-RFCKIILGWDYFRLVKESQERNDKNSKKVDRGKLGLREVKDTYKDVDDYLATFEPL 71
SIF F K +L W Y + DK + R V ++D +Y F PL
Sbjct: 1677 SIFDTFIKEVLKWKYQMFLN-----FDKCGAPTSLCQSISRPVPVRFQDCAEYFNVFLPL 1731
Query: 72 L----FEEVKAQIIQKKDEEEVQEWKLRLVMECGEADGFHLPSVTYEADEVESISP--ND 125
+ FE V + + ++E + +LR + E++ + + P ND
Sbjct: 1732 IILNAFETVAQEWLSSPNKENFYQLQLR-KFPADYKKYWEFLIYLNESELAKQLHPKEND 1790
Query: 126 LLLLSKEEF---KEGSTFPTTYAFALVEHCQ-ANLLRLRMYLAGEVIHINKDAVKSQRLL 181
L+ L+ E+ + G + Y V + +++R I S + L
Sbjct: 1791 LVFLAPEKSYMDRHGMQDCSHYYCGYVHKFRRTSVMRSGKAECSLCIQTQDTLPASVKNL 1850
Query: 182 NIHSLITSSVSAVEKRLFSLKICSLSTIAREYLALRSVGSLPF----KDLILSASEKSSG 237
++ SS+ +++L ++ + S +R LA + P KDL+ + SE+
Sbjct: 1851 T-RCIVISSLVTTQRKLKAMSLLS----SRNQLARAVLNPNPMDFCTKDLLTTTSER--- 1902
Query: 238 SQDQSWKIPGLLHEYIKENHNASQLEAI--------HEGLLRKAFVLIQGPPGTGKTQTI 289
+ Y+K+ N Q +AI H + K LI GPPGTGK++TI
Sbjct: 1903 -----------IVAYLKD-FNEDQKKAIETAYAMVKHSPSVAK-ICLIHGPPGTGKSKTI 1949
Query: 290 LGLLSAILHATPARVHSKGGLR-EIKRGPEL---PMHEKYNHWGRASPWLVGANPRDNIM 345
+GLL +L + HS +IK+ L P + + + +D
Sbjct: 1950 VGLLYRLLTENQRKGHSDENFNAKIKQNRVLVCAPSNAAVDELMKKIILEFKEKCKDKKN 2009
Query: 346 PI-DGDDGFFPTTGNE--LKPEVVNSSRRYRVRVLVCAPSNSALDEIVLR--LLNTGIRD 400
P+ + D G E + EV+ S +V + S + E++ R +L+ + D
Sbjct: 2010 PLGNCGDINLVRLGPEKSINTEVLKFSLDSQVNHRMKKDLPSHIQEMLRRKEILDAQL-D 2068
Query: 401 ENIRSYTPKIVRIGLKAHHSVNSVAIDHLVEQKRDDSAADKQKHGATRKDRDSIRSAILN 460
E R + R G + I + +++++ ++ K+ G ++ +++I +
Sbjct: 2069 ELSRQRA--LCRGGREMQRQELDEHIAIVSKERQELASKIKEVQGRPQRAQNTI----IL 2122
Query: 461 EAVIVCSTLSFSGSALLSKLNHG-----FDVVIIDEAAQAVEPATLVPLATGCKQVFLVG 515
E+ ++C TLS SG LL G F VI+DEA Q+ E TL PL C ++ LVG
Sbjct: 2123 ESHVICCTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEVETLSPLIHRCNKLILVG 2182
Query: 516 DPVQLPATVISPVAEHLGYGTSLFKRLQR-----------AGYPVKMLKTQYRMHPEVRS 564
DP QLP TVIS A+ GY S+ R + PV L QYRMHP++
Sbjct: 2183 DPKQLPPTVISMKAQEYGYDQSMMARFCKLLEENVEQNMIGRLPVLQLTIQYRMHPDICL 2242
Query: 565 FPSREFYDEALEDGSDVEDYTTRDWHEYRC-----FGPFSFFDIHEGKESQPAGSGSWIN 619
FPS Y++ L+ T R RC F P+ FD+ +G E + + S+IN
Sbjct: 2243 FPSNYVYNKNLK--------TNRLTESIRCSSEWPFQPYLVFDVGDGSERR--DNDSYIN 2292
Query: 620 IDEVDFVLLLFHKLISMYPQLKSSSQLAIISPYRHQVKQFQERFKETFGVESQKVVDITT 679
+ E+ V+ + KLI + S + II+ Y+ Q Q+ ++ F + VD T
Sbjct: 2293 VQEIKLVMEII-KLIKEKRKDISFRNIGIITHYKAQKTMIQKDLEKEFDKKGPAEVD--T 2349
Query: 680 VDGCQGREKDVAIFSCVRASD-KKSIGFLADYRRMNVGITRAKSSILVVGCASTLREDKH 738
VD QGR+KD I +CVRAS + SIGFLA +R+NV ITRAK S+ ++G TL E++H
Sbjct: 2350 VDAFQGRQKDCIIVTCVRASAVQGSIGFLASLQRLNVTITRAKYSLFILGHLRTLMENQH 2409
Query: 739 WNNLVKSAEKQDCLFRVSKP 758
W L++ A+K+ + + S P
Sbjct: 2410 WYELIQDAQKRGAIIKTSDP 2429
>sp|Q7Z333|SETX_HUMAN Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=4
Length = 2677
Score = 197 bits (500), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 126/348 (36%), Positives = 186/348 (53%), Gaps = 31/348 (8%)
Query: 426 IDHLVEQKRDDSAADKQKHGATRKDRDSIRSAILNEAVIVCSTLSFSGSALLSKLNHG-- 483
I + +++++ ++ K+ G +K +S I+ E+ I+C TLS SG LL G
Sbjct: 2116 ISKVSKERQELASKIKEVQGRPQK----TQSIIILESHIICCTLSTSGGLLLESAFRGQG 2171
Query: 484 ---FDVVIIDEAAQAVEPATLVPLATGCKQVFLVGDPVQLPATVISPVAEHLGYGTSLFK 540
F VI+DEA Q+ E TL PL C ++ LVGDP QLP TVIS A+ GY S+
Sbjct: 2172 GVPFSCVIVDEAGQSCEIETLTPLIHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMA 2231
Query: 541 RLQR-----------AGYPVKMLKTQYRMHPEVRSFPSREFYDEALEDGSDVEDY-TTRD 588
R R + P+ L QYRMHP++ FPS Y+ L+ E + D
Sbjct: 2232 RFCRLLEENVEHNMISRLPILQLTVQYRMHPDICLFPSNYVYNRNLKTNRQTEAIRCSSD 2291
Query: 589 WHEYRCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISMYPQLKSSSQLAI 648
W F P+ FD+ +G E + + S+IN+ E+ V+ + KLI + S + I
Sbjct: 2292 WP----FQPYLVFDVGDGSERR--DNDSYINVQEIKLVMEII-KLIKDKRKDVSFRNIGI 2344
Query: 649 ISPYRHQVKQFQERFKETFGVESQKVVDITTVDGCQGREKDVAIFSCVRA-SDKKSIGFL 707
I+ Y+ Q Q+ + F + VD TVD QGR+KD I +CVRA S + SIGFL
Sbjct: 2345 ITHYKAQKTMIQKDLDKEFDRKGPAEVD--TVDAFQGRQKDCVIVTCVRANSIQGSIGFL 2402
Query: 708 ADYRRMNVGITRAKSSILVVGCASTLREDKHWNNLVKSAEKQDCLFRV 755
A +R+NV ITRAK S+ ++G TL E++HWN L++ A+K+ + +
Sbjct: 2403 ASLQRLNVTITRAKYSLFILGHLRTLMENQHWNQLIQDAQKRGAIIKT 2450
Score = 39.7 bits (91), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 20/130 (15%)
Query: 183 IHSLITSSVSAVEKRLFSLKICSLSTIAREYLALRSVGSLPF----KDLILSASEKSSGS 238
++ ++ SS+ +++L ++ + +R LA + P KDL+ + SE+
Sbjct: 1875 VNCIVISSLVTTQRKLKAMSLLG----SRNQLARAVLNPNPMDFCTKDLLTTTSER---- 1926
Query: 239 QDQSWKIPGLLHEYIKENHNA--SQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAI 296
I L ++ ++ A + + LI GPPGTGK++TI+GLL +
Sbjct: 1927 ------IIAYLRDFNEDQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGLLYRL 1980
Query: 297 LHATPARVHS 306
L + HS
Sbjct: 1981 LTENQRKGHS 1990
>sp|Q9EPU0|RENT1_MOUSE Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1
SV=2
Length = 1124
Score = 196 bits (499), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 136/424 (32%), Positives = 222/424 (52%), Gaps = 45/424 (10%)
Query: 355 PTTGNELKPE--VVNSSRRYRVRVLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVR 412
P TG + V + +R+ VLVCAPSN A+D++ ++ TG+ K+VR
Sbjct: 500 PGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGL----------KVVR 549
Query: 413 IGLKAHHSVNSVA-----------IDHL-----VEQKRDD----SAADKQKHGATRKDRD 452
+ K+ +++S +D + ++Q +D+ S+AD++++ A + R
Sbjct: 550 LCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALK--RT 607
Query: 453 SIRSAILNEAVIVCSTLSFSGSALLSKLNHGFDVVIIDEAAQAVEPATLVPLATGCKQVF 512
+ R ++N VI C+ + +G L+K+ F ++IDE+ QA EP +VP+ G KQ+
Sbjct: 608 AERELLMNADVICCTCVG-AGDPRLAKMQ--FRSILIDESTQATEPECMVPVVLGAKQLI 664
Query: 513 LVGDPVQLPATVISPVAEHLGYGTSLFKRLQRAGYPVKMLKTQYRMHPEVRSFPSREFYD 572
LVGD QL V+ A G SLF+RL G L+ QYRMHP + +FPS FY+
Sbjct: 665 LVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYE 724
Query: 573 EALEDGSDVEDYTTR--DWHEYRCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLF 630
+L++G D + D+ + P FF + +G+E + S++N E V +
Sbjct: 725 GSLQNGVTAADRVKKGFDFQWPQPDKPM-FFYVTQGQEEIASSGTSYLNRTEAANVEKIT 783
Query: 631 HKLISMYPQLKSSSQLAIISPYRHQVKQFQE--RFKETFGVESQKVVDITTVDGCQGREK 688
KL+ + Q+ II+PY Q + +F + + + V+I +VD QGREK
Sbjct: 784 TKLLKAGAK---PDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREK 840
Query: 689 DVAIFSCVRASDKKSIGFLADYRRMNVGITRAKSSILVVGCASTLREDKHWNNLVKSAEK 748
D I SCVRA++ + IGFL D RR+NV +TRA+ +++VG L + WN+L+ ++
Sbjct: 841 DFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLSYYKE 900
Query: 749 QDCL 752
Q L
Sbjct: 901 QKAL 904
Score = 34.3 bits (77), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 258 NASQLEAIHEGLLRKAFVLIQGPPGTGKTQT 288
N SQ+ A+ + +L++ LIQGPPGTGKT T
Sbjct: 478 NHSQVYAV-KTVLQRPLSLIQGPPGTGKTVT 507
>sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1
SV=2
Length = 1129
Score = 196 bits (498), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 136/424 (32%), Positives = 222/424 (52%), Gaps = 45/424 (10%)
Query: 355 PTTGNELKPE--VVNSSRRYRVRVLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVR 412
P TG + V + +R+ VLVCAPSN A+D++ ++ TG+ K+VR
Sbjct: 505 PGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGL----------KVVR 554
Query: 413 IGLKAHHSVNSVA-----------IDHL-----VEQKRDD----SAADKQKHGATRKDRD 452
+ K+ +++S +D + ++Q +D+ S+AD++++ A + R
Sbjct: 555 LCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALK--RT 612
Query: 453 SIRSAILNEAVIVCSTLSFSGSALLSKLNHGFDVVIIDEAAQAVEPATLVPLATGCKQVF 512
+ R ++N VI C+ + +G L+K+ F ++IDE+ QA EP +VP+ G KQ+
Sbjct: 613 AERELLMNADVICCTCVG-AGDPRLAKMQ--FRSILIDESTQATEPECMVPVVLGAKQLI 669
Query: 513 LVGDPVQLPATVISPVAEHLGYGTSLFKRLQRAGYPVKMLKTQYRMHPEVRSFPSREFYD 572
LVGD QL V+ A G SLF+RL G L+ QYRMHP + +FPS FY+
Sbjct: 670 LVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYE 729
Query: 573 EALEDGSDVEDYTTR--DWHEYRCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLF 630
+L++G D + D+ + P FF + +G+E + S++N E V +
Sbjct: 730 GSLQNGVTAADRVKKGFDFQWPQPDKPM-FFYVTQGQEEIASSGTSYLNRTEAANVEKIT 788
Query: 631 HKLISMYPQLKSSSQLAIISPYRHQVKQFQE--RFKETFGVESQKVVDITTVDGCQGREK 688
KL+ + Q+ II+PY Q + +F + + + V+I +VD QGREK
Sbjct: 789 TKLLKAGAK---PDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREK 845
Query: 689 DVAIFSCVRASDKKSIGFLADYRRMNVGITRAKSSILVVGCASTLREDKHWNNLVKSAEK 748
D I SCVRA++ + IGFL D RR+NV +TRA+ +++VG L + WN+L+ ++
Sbjct: 846 DFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKE 905
Query: 749 QDCL 752
Q L
Sbjct: 906 QKVL 909
Score = 34.3 bits (77), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 258 NASQLEAIHEGLLRKAFVLIQGPPGTGKTQT 288
N SQ+ A+ + +L++ LIQGPPGTGKT T
Sbjct: 483 NHSQVYAV-KTVLQRPLSLIQGPPGTGKTVT 512
>sp|Q9FJR0|RENT1_ARATH Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana
GN=UPF1 PE=1 SV=2
Length = 1254
Score = 194 bits (494), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 136/416 (32%), Positives = 213/416 (51%), Gaps = 49/416 (11%)
Query: 365 VVNSSRRYRVRVLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVRIGLKAHHSVNS- 423
V + +++ + +VLVCAPSN A+D++ ++ TG+ K+VR+ K+ +V+S
Sbjct: 524 VYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGL----------KVVRLCAKSREAVSSP 573
Query: 424 -------VAIDHL----------VEQKRDD----SAADKQKHGATRKDRDSIRSAILNEA 462
+ HL ++Q +D+ S++D++K+ ++ + I A
Sbjct: 574 VEYLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKNLKR---ATEREITQSA 630
Query: 463 VIVCSTLSFSGSALLSKLNHGFDVVIIDEAAQAVEPATLVPLATGCKQVFLVGDPVQLPA 522
++C T G+A L N F V+IDE+ QA EP L+PL G KQV LVGD QL
Sbjct: 631 DVICCTCV--GAADLRLSNFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGP 688
Query: 523 TVISPVAEHLGYGTSLFKRLQRAGYPVKMLKTQYRMHPEVRSFPSREFYDEALEDG-SDV 581
++ A G SLF+RL G L+ QYRMHP + FPS FY+ L++G + +
Sbjct: 689 VIMCKKAARAGLAQSLFERLVTLGIKPIRLQVQYRMHPALSEFPSNSFYEGTLQNGVTII 748
Query: 582 EDYTTRDWHEYRCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISMYPQLK 641
E TT + FF + G+E A S++N E V KL++ + LK
Sbjct: 749 ERQTTGIDFPWPVPNRPMFFYVQLGQEEISASGTSYLNRTEAANV----EKLVTAF--LK 802
Query: 642 SS---SQLAIISPYRHQVKQFQERFKETFGVESQ--KVVDITTVDGCQGREKDVAIFSCV 696
S SQ+ +I+PY Q + Q K +++ +VD QGREKD I SCV
Sbjct: 803 SGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQLYKEIEVASVDSFQGREKDYIILSCV 862
Query: 697 RASDKKSIGFLADYRRMNVGITRAKSSILVVGCASTLREDKHWNNLVKSAEKQDCL 752
R+++ + IGFL D RR+NV +TRA+ I+++G L + WN L+ ++ +CL
Sbjct: 863 RSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECL 918
Score = 38.5 bits (88), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Query: 258 NASQLEAIHEGLLRKAFVLIQGPPGTGKTQT 288
NASQ+ A+ + +L+K LIQGPPGTGKT T
Sbjct: 490 NASQVNAV-KSVLQKPISLIQGPPGTGKTVT 519
>sp|Q9HEH1|RENT1_NEUCR Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=2E4.130 PE=3 SV=1
Length = 1093
Score = 192 bits (489), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 129/402 (32%), Positives = 201/402 (50%), Gaps = 43/402 (10%)
Query: 375 RVLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVRIGLKAHHSVNSVA--------- 425
+VLVCAPSN A+D++ R+ TG+ K+VR+ K+ V S
Sbjct: 501 QVLVCAPSNVAVDQLCERIHRTGL----------KVVRLTAKSREDVESSVSFLALHEQV 550
Query: 426 --------IDHLVEQKRDDSAADKQKHGATRKDRDSIRSAILNEAVIVCSTLSFSGSALL 477
+D LV+ K + Q ++ IL A +VC T +G L
Sbjct: 551 RMNTTNKELDGLVKLKTETGELSSQDEKRFKQLTRQAEREILQNADVVCCTCVGAGDPRL 610
Query: 478 SKLNHGFDVVIIDEAAQAVEPATLVPLATGCKQVFLVGDPVQLPATVISPVAEHLGYGTS 537
SK+ F V+IDE+ Q+ EP ++PL GCKQV LVGD QL +++ A G S
Sbjct: 611 SKMK--FRNVLIDESTQSAEPECMIPLVLGCKQVVLVGDHKQLGPVIMNKKAAKAGLNQS 668
Query: 538 LFKRLQRAGYPVKMLKTQYRMHPEVRSFPSREFYDEALEDGSDVEDYTTRD----WHEYR 593
LF+RL + + LK QYRMHP + FPS FY+ +L++G + +D W
Sbjct: 669 LFERLVKLQFTPIRLKVQYRMHPCLSEFPSNMFYEGSLQNGVTAAERLRKDVDFPWPVPE 728
Query: 594 CFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISMYPQLK-SSSQLAIISPY 652
P F+ + G E A S++N E V K+++ + + + + +I+PY
Sbjct: 729 T--PMMFWS-NLGNEEISASGTSYLNRTEAANV----EKIVTRFFKAGVKPADIGVITPY 781
Query: 653 RHQVKQFQERFKE--TFGVESQKVVDITTVDGCQGREKDVAIFSCVRASDKKSIGFLADY 710
Q + TF ES + V++ +VD QGREKD + SCVR+++ + IGFL+D
Sbjct: 782 EGQRSYIVNTMQNTGTFKKESYREVEVASVDAFQGREKDFIVLSCVRSNENQGIGFLSDP 841
Query: 711 RRMNVGITRAKSSILVVGCASTLREDKHWNNLVKSAEKQDCL 752
RR+NV +TRAK ++++G L + + W++L+ + + CL
Sbjct: 842 RRLNVALTRAKYGLVIIGNPKVLCKHELWHHLLVHFKDKKCL 883
Score = 37.7 bits (86), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 7/48 (14%)
Query: 241 QSWKIPGLLHEYIKENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQT 288
+ + +PGL NASQ+ AI + +L LIQGPPGTGKT T
Sbjct: 446 KKFHVPGL------PELNASQIAAIKQ-VLSNPLSLIQGPPGTGKTVT 486
>sp|Q9VYS3|RENT1_DROME Regulator of nonsense transcripts 1 homolog OS=Drosophila
melanogaster GN=Upf1 PE=1 SV=2
Length = 1180
Score = 191 bits (484), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 130/394 (32%), Positives = 217/394 (55%), Gaps = 48/394 (12%)
Query: 376 VLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVRIGLKAHHSVNS----VAIDHLV- 430
VLVCAPSN+A+D++ ++ T + K+VR+ K+ +++S +A+ + +
Sbjct: 498 VLVCAPSNTAVDQLTEKIHRTNL----------KVVRVCAKSREAIDSPVSFLALHNQIR 547
Query: 431 -----------EQKRDD----SAADKQKHGATRKDRDSIRSAILNEAVIVCSTLSFSGSA 475
+Q +D+ S+AD++++ R + + + +L A ++C T +G
Sbjct: 548 NMETNSELKKLQQLKDETGELSSADEKRY---RNLKRAAENQLLEAADVICCTCVGAGDG 604
Query: 476 LLSKLNHGFDVVIIDEAAQAVEPATLVPLATGCKQVFLVGDPVQLPATVISPVAEHLGYG 535
LS++ F ++IDE+ Q+ EP +VP+ G KQ+ LVGD QL V+ A G
Sbjct: 605 RLSRVK--FTSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLS 662
Query: 536 TSLFKRLQRAGYPVKMLKTQYRMHPEVRSFPSREFYDEALEDGSDVEDYTTR-DWHEYRC 594
SLF+RL G L+ QYRMHPE+ FPS FY+ +L++G ED + D+ +
Sbjct: 663 QSLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRLKLDFPWPQP 722
Query: 595 FGPFSFFDIHEGKESQPAGSG-SWINIDEVDFVLLLFHKLI--SMYPQLKSSSQLAIISP 651
P FF + +G+E + AGSG S++N E V + + + + P+ Q+ II+P
Sbjct: 723 ERPM-FFLVTQGQE-EIAGSGTSFLNRTEAANVEKITTRFLKAGIKPE-----QIGIITP 775
Query: 652 YRHQVKQFQERFKETFGVESQ--KVVDITTVDGCQGREKDVAIFSCVRASDKKSIGFLAD 709
Y Q + + + S+ + ++I +VD QGREKD+ I SCVR+++++ IGFL D
Sbjct: 776 YEGQRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLND 835
Query: 710 YRRMNVGITRAKSSILVVGCASTLREDKHWNNLV 743
RR+NV +TRAK I++VG L + + WN+L+
Sbjct: 836 PRRLNVALTRAKFGIIIVGNPKVLAKQQLWNHLL 869
>sp|P30771|NAM7_YEAST ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=NAM7 PE=1 SV=1
Length = 971
Score = 189 bits (480), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 136/422 (32%), Positives = 218/422 (51%), Gaps = 43/422 (10%)
Query: 355 PTTGNELKPE--VVNSSRRYRVRVLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVR 412
P TG + V + S+ ++ R+LVCAPSN A+D + +L + G+ K+VR
Sbjct: 432 PGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGL----------KVVR 481
Query: 413 IGLKAHH----SVNSVAIDHLVEQ----------KRDDSAADKQKHGATR--KDRDSIRS 456
+ K+ SV+++A+ +LV + K D + R K +
Sbjct: 482 LTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEA 541
Query: 457 AILNEAVIVCSTLSFSGSALLSKLNHGFDVVIIDEAAQAVEPATLVPLATGCKQVFLVGD 516
ILN+A +VC T +G +L+ F V+IDE+ QA EP L+P+ G KQV LVGD
Sbjct: 542 EILNKADVVCCTCVGAGD---KRLDTKFRTVLIDESTQASEPECLIPIVKGAKQVILVGD 598
Query: 517 PVQLPATVISPVAEHLGYGTSLFKRLQRAGYPVKMLKTQYRMHPEVRSFPSREFYDEALE 576
QL ++ A G SLF+RL G+ L+ QYRM+P + FPS FY+ +L+
Sbjct: 599 HQQLGPVILERKAADAGLKQSLFERLISLGHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQ 658
Query: 577 DGSDVEDYTTRDWH-EYRCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLI- 634
+G +E T + + G F + G+E A S++N E + KL
Sbjct: 659 NGVTIEQRTVPNSKFPWPIRGIPMMFWANYGREEISANGTSFLNRIEAMNCERIITKLFR 718
Query: 635 -SMYPQLKSSSQLAIISPYRHQVKQFQERFKETFGVESQKV---VDITTVDGCQGREKDV 690
+ P+ Q+ +I+PY Q + + ++ + G + + V++ +VD QGREKD
Sbjct: 719 DGVKPE-----QIGVITPYEGQ-RAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDY 772
Query: 691 AIFSCVRASDKKSIGFLADYRRMNVGITRAKSSILVVGCASTLREDKHWNNLVKSAEKQD 750
I SCVRA+++++IGFL D RR+NVG+TRAK ++++G +L + WN+L+ ++
Sbjct: 773 IILSCVRANEQQAIGFLRDPRRLNVGLTRAKYGLVILGNPRSLARNTLWNHLLIHFREKG 832
Query: 751 CL 752
CL
Sbjct: 833 CL 834
Score = 35.0 bits (79), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 258 NASQLEAIHEGLLRKAFVLIQGPPGTGKTQT 288
N+SQ A+ +L++ LIQGPPGTGKT T
Sbjct: 410 NSSQSNAVSH-VLQRPLSLIQGPPGTGKTVT 439
>sp|Q54I89|RENT1_DICDI Regulator of nonsense transcripts 1 OS=Dictyostelium discoideum
GN=upf1 PE=3 SV=1
Length = 1331
Score = 189 bits (480), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 131/405 (32%), Positives = 204/405 (50%), Gaps = 48/405 (11%)
Query: 375 RVLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVRIGLKAHHSVNSVAIDHLVEQK- 433
+VLVC PSN A+D++ +L G+ K+VR+ K V S ++HL K
Sbjct: 584 KVLVCTPSNVAIDQLTGKLHEIGL----------KVVRLSSKLREEVAS-PVEHLTLHKQ 632
Query: 434 --RDDSAADKQKHGATRKDRDSIRS------------------AILNEAVIVCSTLSFSG 473
+ D D + G RK +++ S AIL +A ++C+T +G
Sbjct: 633 VYKLDQMGDGEL-GKLRKLKEAFGSLSNEDEKRYIYLRRMMEMAILRKADVICATCVGAG 691
Query: 474 SALLSKLNHGFDVVIIDEAAQAVEPATLVPLATGCKQVFLVGDPVQLPATVISPVAEHLG 533
LS+ F ++IDE+ QA EP L+PL G KQV LVGD QL ++ G
Sbjct: 692 DPRLSQFR--FPHILIDESTQASEPECLIPLMMGAKQVILVGDHRQLGPVLLCKKVVDAG 749
Query: 534 YGTSLFKRLQRAGYPVKMLKTQYRMHPEVRSFPSREFYDEALED---GSDVEDYTTRDWH 590
SLF+RL G+ + L QYRMHP + FPS Y+ L +D + + W
Sbjct: 750 LSQSLFERLISLGHHPERLTIQYRMHPSLTEFPSNTSYEGQLVSELSHTDRDSQSKFPWP 809
Query: 591 EYRCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISMYPQLKS-SSQLAII 649
+ + P FF+ +E +G+ S+IN E K+++ + +L S Q+ II
Sbjct: 810 QPK--DPMFFFNCTGSEEISSSGT-SFINTTEASIC----EKIVTKFLELGSLPGQIGII 862
Query: 650 SPYRHQVKQFQERFKET--FGVESQKVVDITTVDGCQGREKDVAIFSCVRASDKKSIGFL 707
+PY Q +++ +E K +++ +VD QGREKD I SCVR++D + IGFL
Sbjct: 863 TPYEGQRAYITSHMQKSGKLNLELYKSIEVASVDSFQGREKDYIILSCVRSNDYQGIGFL 922
Query: 708 ADYRRMNVGITRAKSSILVVGCASTLREDKHWNNLVKSAEKQDCL 752
D RR+NV +TRA+ ++++G A L +D WN+L+ + ++ L
Sbjct: 923 QDPRRLNVALTRARFGLIILGNAKVLSKDPLWNSLISHFKNKNVL 967
Score = 33.9 bits (76), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 258 NASQLEAIHEGLLRKAFVLIQGPPGTGKT 286
N SQ+ A+++ +L LIQGPPGTGKT
Sbjct: 538 NESQISAVNK-VLTAPLSLIQGPPGTGKT 565
>sp|O76512|RENT1_CAEEL Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans
GN=smg-2 PE=1 SV=1
Length = 1069
Score = 189 bits (479), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 140/399 (35%), Positives = 199/399 (49%), Gaps = 38/399 (9%)
Query: 376 VLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVRIGLKAH-HSVNSVAIDHLVEQKR 434
VLVC+PSN A+D + ++ TG+ K+VR+ ++ HS +V L Q +
Sbjct: 492 VLVCSPSNIAVDHLAEKIHKTGL----------KVVRLCARSREHSETTVPYLTLQHQLK 541
Query: 435 DDSAADKQK------HGATRKDRDSIR---------SAILNEAVIVCSTLSFSGSALLSK 479
A+ QK + +D +R +L A ++C T S + A LSK
Sbjct: 542 VMGGAELQKLIQLKDEAGELEFKDDLRYMQLKRVKEHELLAAADVICCTCSSAADARLSK 601
Query: 480 LNHGFDVVIIDEAAQAVEPATLVPLATGCKQVFLVGDPVQLPATVISPVAEHLGYGTSLF 539
+ V+IDE+ QA EP LV + G +Q+ LVGD QL VI A G SLF
Sbjct: 602 IR--TRTVLIDESTQATEPEILVSIMRGVRQLVLVGDHCQLGPVVICKKAAIAGLSQSLF 659
Query: 540 KRLQRAGYPVKMLKTQYRMHPEVRSFPSREFYDEALEDGSDVED--YTTRDWHEYRCFGP 597
+RL G L+ QYRMHP + FPS FYD +L++G D T DWH + P
Sbjct: 660 ERLVLLGIRPFRLQVQYRMHPVLSEFPSNVFYDGSLQNGVTENDRHMTGVDWHWPKPNKP 719
Query: 598 FSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISMYPQLKSSSQLAIISPYRHQVK 657
+FF G E A S++N E V L KLI Q Q+ +I+ Y Q +
Sbjct: 720 -AFFWHCSGSEELSASGTSFLNRTEAANVEKLVSKLIKAGVQ---PHQIGVITSYEGQ-R 774
Query: 658 QFQERFKETFGVESQKV---VDITTVDGCQGREKDVAIFSCVRASDKKSIGFLADYRRMN 714
F + T G + K+ V+I +VD QGREKD I +CVR++D IGFL+D RR+N
Sbjct: 775 SFIVNYMHTQGTLNSKLYENVEIASVDAFQGREKDYIIVTCVRSNDILGIGFLSDPRRLN 834
Query: 715 VGITRAKSSILVVGCASTLREDKHWNNLVKSAEKQDCLF 753
V ITRAK +++VG A L W+ L+ + ++ L+
Sbjct: 835 VAITRAKYGLVLVGNAKVLARHDLWHELINHYKSKEMLY 873
Score = 37.4 bits (85), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 258 NASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAILHATPARV 304
N+SQ++A+ + +L + LIQGPPGTGKT ++ ++ T V
Sbjct: 447 NSSQMQAVKQ-VLTRPLSLIQGPPGTGKTVVSATIVYHLVQKTEGNV 492
>sp|Q98TR3|RENT1_TAKRU Putative regulator of nonsense transcripts 1 OS=Takifugu rubripes
GN=rent1 PE=3 SV=1
Length = 1097
Score = 181 bits (458), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 134/424 (31%), Positives = 221/424 (52%), Gaps = 47/424 (11%)
Query: 355 PTTGNELKPE--VVNSSRRYRVRVLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVR 412
P TG + V + SR+ VLVCAPSN A+D++ ++ TG+ K+VR
Sbjct: 476 PGTGKTVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGL----------KVVR 525
Query: 413 IGLKAHHSVNSVA-----------IDHL-----VEQKRDD----SAADKQKHGATRKDRD 452
+ K+ ++ S +D + ++Q +D+ S+AD++++ A + R
Sbjct: 526 LCAKSREAIESPVSFLALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALK--RT 583
Query: 453 SIRSAILNEAVIVCSTLSFSGSALLSKLNHGFDVVIIDEAAQAVEPATLVPLATGCKQVF 512
+ R ++N VI C+ + +G L+K+ F ++IDE+ QA EP + P+ G KQ+
Sbjct: 584 AERELLMNADVIWCTCVR-AGDPRLAKMQ--FRSILIDESTQATEPKCIGPVELGAKQLI 640
Query: 513 LVGDPVQLPATVISPVAEHLGYGTSLFKRLQRAGYPVKMLKTQYRMHPEVRSFPSREFYD 572
L G+ + V+ A G SLF+RL G L+ QYRMHP + +FPS FY+
Sbjct: 641 L-GEITASWSCVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYE 699
Query: 573 EALEDGSDVEDYTTR--DWHEYRCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLF 630
+L++G D + D+ + P FF + +G+E + S++N E V +
Sbjct: 700 GSLQNGVTAGDRIKKGFDFQWPQPEKPM-FFYVTQGQEEIASSGTSYLNRTEAANVEKIT 758
Query: 631 HKLISMYPQLKSSSQLAIISPYRHQVKQFQERFKETFGVESQKV--VDITTVDGCQGREK 688
+L+ + Q+ II+PY Q + + ++ + G K+ V+I +VD QGREK
Sbjct: 759 TRLLKAGAK---PDQIGIITPYEGQ-RSYLVQYMQFSGSLHTKLYQVEIASVDAFQGREK 814
Query: 689 DVAIFSCVRASDKKSIGFLADYRRMNVGITRAKSSILVVGCASTLREDKHWNNLVKSAEK 748
D I SCVRA++ + IGFL D RR+NV +TRAK +++VG L + WNNL+ + ++
Sbjct: 815 DFIILSCVRANEHQGIGFLNDPRRLNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKE 874
Query: 749 QDCL 752
Q L
Sbjct: 875 QKVL 878
Score = 34.3 bits (77), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 258 NASQLEAIHEGLLRKAFVLIQGPPGTGKTQT 288
N SQ+ A+ + +L++ LIQGPPGTGKT T
Sbjct: 454 NHSQVYAV-KTVLQRPLSLIQGPPGTGKTVT 483
>sp|Q57568|Y104_METJA Uncharacterized ATP-dependent helicase MJ0104 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0104 PE=3 SV=1
Length = 663
Score = 175 bits (444), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 154/527 (29%), Positives = 257/527 (48%), Gaps = 85/527 (16%)
Query: 251 EYIKENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLL--------SAILHATPA 302
E+ +N N SQ A+ + +L + LI GPPGTGKT+TI ++ +L +
Sbjct: 179 EFYDKNLNESQKLAVKKAVLSRDLYLIHGPPGTGKTRTITEVIVQEVKFNKHKVLATADS 238
Query: 303 RVHSKGGLRE-IKRGPELPMHEKYNHWGRASPWLVGANPRDNIMP--IDGDDGFFPTTGN 359
+ + L IK+ P+L + + H R S L+ + +P I+ + +
Sbjct: 239 NIAADNILEYLIKKYPDLKVV-RVGHPTRISKDLIQHS-----LPYLIENHEKYQEILAL 292
Query: 360 ELKPEVVNSSRRYRVRVLVCAPS--NSALDEIVLRLLNT-----GIRDENIRSYTPKIVR 412
E + + R + L +P DE +L++ GI E I S I+R
Sbjct: 293 R---EKIKEIKEQRDKFLKPSPRWRRGMSDEQILKVAKRKKSYRGIPKEKIVSMAEWIIR 349
Query: 413 IGLKAHHSVNSVAIDHLVEQKRDDSAADKQKHGATRKDRDSIRSAILNEAVIVCSTLSFS 472
K +N+ +D + E+ I + IL EA ++ +T S +
Sbjct: 350 -NKKIKRIINN--LDEITEK---------------------IMNEILAEADVIVATNSMA 385
Query: 473 GSALLSKLNHGFDVVIIDEAAQAVEPATLVPLATGCKQVFLVGDPVQLPATVISPVAEHL 532
GS +L FDV++IDE +QA+EP+ L+P+ G +++ + GD QLP TV+S E+
Sbjct: 386 GSEILK--GWEFDVIVIDEGSQAMEPSCLIPIVKG-RKLIMAGDHKQLPPTVLS---ENE 439
Query: 533 GYGTSLFKRLQRAGYP--VKMLKTQYRMHPEVRSFPSREFYDEALEDGSDVEDYTTRDWH 590
+LF+RL + YP +L+ QYRM+ ++ FP++ FY+ L+ V++ T D
Sbjct: 440 ELKKTLFERLIKK-YPEFSSILEIQYRMNEKIMEFPNKMFYNNKLKADESVKNITLLDLV 498
Query: 591 EYRCFG----------PFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISMYPQL 640
+ P F ++ EG E + S S+ NI+E + VL + KL+
Sbjct: 499 KEEEIDEVDRDIINEIPVQFINV-EGIERKDKESPSYYNIEEAEKVLEIVKKLV------ 551
Query: 641 KSSSQLAIISPYRHQVKQFQERFKETFGVESQKVVDITTVDGCQGREKDVAIFSCVRASD 700
K +I+PY QV+ + F+E ++ +++ TVDG QGRE + + S VR
Sbjct: 552 KYKIPTNVITPYDAQVRYLRRLFEE-HNID----IEVNTVDGFQGRENEAIVISFVRT-- 604
Query: 701 KKSIGFLADYRRMNVGITRAKSSILVVGCASTLREDKHWNNLVKSAE 747
K+ GFL D RR+NV ITRAK ++++G + L++DK +N ++K A+
Sbjct: 605 -KNFGFLKDLRRLNVAITRAKRKLILIGNENLLKQDKVYNEMIKWAK 650
>sp|Q09820|RENT1_SCHPO ATP-dependent helicase upf1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=upf1 PE=3 SV=2
Length = 925
Score = 174 bits (441), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 122/398 (30%), Positives = 192/398 (48%), Gaps = 43/398 (10%)
Query: 370 RRYRVRVLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVRIGLKAHHSVNSVA---- 425
R+ VLVCAPSN A+D++ ++ TG+R +VR+ K+ + S
Sbjct: 439 RKSHSPVLVCAPSNVAVDQLAEKIHRTGLR----------VVRVAAKSREDIESSVSFLS 488
Query: 426 -------------IDHLVEQKRDDSAADKQKHGATRKDRDSIRSAILNEAVIVCSTLSFS 472
+ L++ + +++ Q R + +L A ++C T +
Sbjct: 489 LHEQIKNYKFNPELQRLLKLRSENNELSIQDEKKLRILVAAAEKELLRAAHVICCTCVGA 548
Query: 473 GSALLSKLNHGFDVVIIDEAAQAVEPATLVPLATGCKQVFLVGDPVQLPATVISPVAEHL 532
G +SK + F V+IDEA QA EP ++PL G KQV LVGD QL V++
Sbjct: 549 GDRRISK--YKFRSVLIDEATQASEPECMIPLVLGAKQVVLVGDHQQLGPVVMNKKVALA 606
Query: 533 GYGTSLFKRLQRAGYPVKMLKTQYRMHPEVRSFPSREFYDEALEDGSDVEDYTTR--DWH 590
SLF+RL G L QYRMHP + FPS FY+ L++G + R D+
Sbjct: 607 SLSQSLFERLIILGNSPFRLVVQYRMHPCLSEFPSNTFYEGTLQNGVTTSERIARHVDFP 666
Query: 591 EYRCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISMYPQLKSS---SQLA 647
+ P F+ + G+E A S++N E K+++ + L+S+ Q+
Sbjct: 667 WIQPDSPLMFY-ANFGQEELSASGTSFLNRTEASTC----EKIVTTF--LRSNVLPEQIG 719
Query: 648 IISPYRHQVKQFQERFKETFGVESQ--KVVDITTVDGCQGREKDVAIFSCVRASDKKSIG 705
I++PY Q + + ++ K V++ +VD QGREKD I SCVR+S+ + IG
Sbjct: 720 IVTPYDGQRSYIVQYMQNNGSMQKDLYKAVEVASVDAFQGREKDFIILSCVRSSEHQGIG 779
Query: 706 FLADYRRMNVGITRAKSSILVVGCASTLREDKHWNNLV 743
F+ D RR+NV +TRAK ++V+G L + W + V
Sbjct: 780 FVNDPRRLNVALTRAKYGVIVLGNPKVLAKHALWYHFV 817
>sp|Q6ZU11|YD002_HUMAN Uncharacterized protein FLJ44066 OS=Homo sapiens PE=2 SV=1
Length = 926
Score = 156 bits (395), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 113/386 (29%), Positives = 196/386 (50%), Gaps = 25/386 (6%)
Query: 375 RVLVCAPSNSALDEIVLRLLNTG----IRDENIRSYTPKIVRIGLKAHHSVNSVAIDHLV 430
++L+ + +N A+D ++L LL+ G IR ++R I+ L A S + L
Sbjct: 512 KLLISSSTNVAVDRVLLGLLSLGFENFIRVGSVRKIAKPILPYSLHAGSENESEQLKELH 571
Query: 431 EQKRDDSAADKQKH--GATRKDRDSIRSAILNEAVIVCSTLSFSGSALLSKLNHGFDVVI 488
++D ++ + + + + +L + +V T + ++ L F VV+
Sbjct: 572 ALMKEDLTPTERVYVRKSIEQHKLGTNRTLLKQVRVVGVTCAACPFPCMNDLK--FPVVV 629
Query: 489 IDEAAQAVEPATLVPLAT-GCKQVFLVGDPVQLPATVISPVAEHL-GYGTSLFKRLQRAG 546
+DE +Q EPA+L+P+A C+++ LVGDP QLP T+ A H G +LF RL G
Sbjct: 630 LDECSQITEPASLLPIARFECEKLILVGDPKQLPPTIQGSDAAHENGLEQTLFDRLCLMG 689
Query: 547 YPVKMLKTQYRMHPEVRSFPSREFYDEALEDG-SDVEDYTTRDWHEYRCFGPFSFFDIHE 605
+ +L+TQYR HP + + + FY AL +G +++E +W CF +++ +
Sbjct: 690 HKPILLRTQYRCHPAISAIANDLFYKGALMNGVTEIERSPLLEWLPTLCF-----YNV-K 743
Query: 606 GKESQPAGSGSWINIDEVDFVLLLFHKLISMYPQLKSSSQLAIISPYRHQVKQFQERFKE 665
G E Q S+ N+ E F L L LI+ + S + +I+ Y+ Q+ +
Sbjct: 744 GLE-QIERDNSFHNVAEATFTLKLIQSLIA---SGIAGSMIGVITLYKSQMYKLCHLLSA 799
Query: 666 T-FGVESQKVVDITTVDGCQGREKDVAIFSCVRASDKKSIGFLADYRRMNVGITRAKSSI 724
F K V ++TVD QG EK++ I SCVR + +GF+ +RMNV +TR K +
Sbjct: 800 VDFHHPDIKTVQVSTVDAFQGAEKEIIILSCVRT---RQVGFIDSEKRMNVALTRGKRHL 856
Query: 725 LVVGCASTLREDKHWNNLVKSAEKQD 750
L+VG + LR+++ W +++ E ++
Sbjct: 857 LIVGNLACLRKNQLWGRVIQHCEGRE 882
>sp|O94247|HCS1_SCHPO DNA polymerase alpha-associated DNA helicase A
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hcs1 PE=3 SV=1
Length = 660
Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 129/408 (31%), Positives = 193/408 (47%), Gaps = 78/408 (19%)
Query: 375 RVLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVRIGLKAH-------HSVNSVAID 427
R+LVC SN A+D IV RL ++GI +VR+G A HS++ ++
Sbjct: 255 RILVCGASNLAVDNIVDRLSSSGI----------PMVRLGHPARLLPSILDHSLDVLSRT 304
Query: 428 ----HLVEQKRDD-----SAADKQKHGATRKD--------RDSIR-------SAILNEAV 463
++ +D S K K+G R++ R R + I++ +
Sbjct: 305 GDNGDVIRGISEDIDVCLSKITKTKNGRERREIYKNIRELRKDYRKYEAKTVANIVSASK 364
Query: 464 IVCSTLSFSGSALLSKLNHGFDVVIIDEAAQAVEPATLVPLATGCKQVFLVGDPVQLPAT 523
+V TL +GS L FD VIIDEA+QA+EP +PL G +V L GD +QL
Sbjct: 365 VVFCTLHGAGSRQLK--GQRFDAVIIDEASQALEPQCWIPL-LGMNKVILAGDHMQL--- 418
Query: 524 VISPVAEHLGYGTSLFKRLQRA-GYPVK-MLKTQYRMHPEVRSFPSREFYDEALEDGSDV 581
SP + S+F+RL ++ G VK L QYRMH + FPS FYD L +V
Sbjct: 419 --SPNVQSKRPYISMFERLVKSQGDLVKCFLNIQYRMHELISKFPSDTFYDSKLVPAEEV 476
Query: 582 EDYTTRDWHE-------------YRCFGPFSFFDIHEGKES--QPAGSGSWINIDEVDFV 626
+ D Y G + D E ++ Q + S W E V
Sbjct: 477 KKRLLMDLENVEETELTDSPIYFYDTLGNYQEDDRSEDMQNFYQDSKSNHW----EAQIV 532
Query: 627 LLLFHKLISMYPQLKSSSQLAIISPYRHQVKQFQERFKETFGVESQKVVDITTVDGCQGR 686
L+ + K +A+++PY QV ++ KE G+E V++ +VD QGR
Sbjct: 533 SYHISGLLEAGLEAKD---IAVVTPYNAQVALIRQLLKEK-GIE----VEMGSVDKVQGR 584
Query: 687 EKDVAIFSCVRASDKKSIGFLADYRRMNVGITRAKSSILVVGCASTLR 734
EK+ IFS VR++D + +GFLA+ RR+NV ITR K + V+G ++T++
Sbjct: 585 EKEAIIFSLVRSNDVREVGFLAEKRRLNVAITRPKRHLCVIGDSNTVK 632
Score = 41.2 bits (95), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 251 EYIKENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAIL 297
+Y + NASQ +A+ + K LI GPPGTGKT T++ ++ ++
Sbjct: 204 KYFNKELNASQKKAVKFSIAVKELSLIHGPPGTGKTHTLVEIIQQLV 250
>sp|E1BMP7|DNA2_BOVIN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Bos taurus
GN=DNA2 PE=3 SV=3
Length = 1061
Score = 137 bits (346), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 110/384 (28%), Positives = 174/384 (45%), Gaps = 60/384 (15%)
Query: 376 VLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVRIGL--KAHHSVNSVAIDHLVEQK 433
VL+ + ++SA+D I+L+L I +R+G K H + + + K
Sbjct: 672 VLLTSYTHSAVDNILLKLAKFKI----------GFLRLGQIQKVHPDIQKFTEEEICRSK 721
Query: 434 RDDSAADKQKHGATRKDRDSIRSAILNEAVIVCSTLSFSGSALLSKLNHGFDVVIIDEAA 493
S A + + N +IV +T + S+ FD I+DEA+
Sbjct: 722 SIKSLA--------------LLEELYNSQLIVATTCMGINHPIFSR--KTFDFCIVDEAS 765
Query: 494 QAVEPATLVPLATGCKQVFLVGDPVQLPATVISPVAEHLGYGTSLFKRLQRAGYPVKMLK 553
Q +P L PL ++ LVGD QLP V++ A LG SLFKRL++ V L
Sbjct: 766 QISQPVCLGPLFFS-RRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQNKNAVVQLT 824
Query: 554 TQYRMHPEVRSFPSREFYDEALEDGSD---------------------VEDYTTRDW--H 590
QYRM+ ++ S ++ Y+ LE GSD DY+ W
Sbjct: 825 VQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLPNFKDVKLELEFYADYSENPWLIA 884
Query: 591 EYRCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISMYPQLKSSSQLAIIS 650
+ P F + H+ + G NI E V+ L I + S + II+
Sbjct: 885 AFEPNNPVCFLNTHKVPAPEQVEKGGVSNIMEAKLVVFLTSVFIKAGCK---PSDIGIIA 941
Query: 651 PYRHQVKQFQERFKETFGVESQKVVDITTVDGCQGREKDVAIFSCVRASDKKSIG-FLAD 709
PYR Q+K + ++ S +V++ TVD QGR+K + + S VR+++ ++G L D
Sbjct: 942 PYRQQLKVISDLLAQS----SVGMVEVNTVDRYQGRDKSIVVVSFVRSNEDGTLGELLKD 997
Query: 710 YRRMNVGITRAKSSILVVGCASTL 733
+RR+NV ITRAK ++++GC +L
Sbjct: 998 WRRLNVAITRAKHKLILLGCVPSL 1021
Score = 37.0 bits (84), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 258 NASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAILHA 299
N Q +A+ + LL K + LI G PGTGKT TI L+ IL+A
Sbjct: 627 NKPQRQAMKKVLLSKDYTLIVGMPGTGKTTTICTLVR-ILYA 667
>sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=1
SV=1
Length = 1002
Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 130/475 (27%), Positives = 202/475 (42%), Gaps = 94/475 (19%)
Query: 374 VRVLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVRIGLKAHHSVNSVAIDHLVEQK 433
RVLVCAPSNSA D I+ +LL E +R +I R+
Sbjct: 445 ARVLVCAPSNSAADHILEKLLCL----EGVRIKDNEIFRL-------------------- 480
Query: 434 RDDSAADKQKHGATRK----DRDSIRSAILNEAVIVCSTL-----------SFSGSALLS 478
+ ATR + IR +E + C L ++ ++LL+
Sbjct: 481 ----------NAATRSYEEIKPEIIRFCFFDELIFKCPPLKALTRYKLVVSTYMSASLLN 530
Query: 479 K--LNHG-FDVVIIDEAAQAVEPATLVPLATGC---KQVFLVGDPVQLPATVISPVAEHL 532
+N G F +++DEA QA EP ++ ++ C V L GDP QL + S AE L
Sbjct: 531 AEGVNRGHFTHILLDEAGQASEPENMIAVSNLCLTETVVVLAGDPRQLGPVIYSRDAESL 590
Query: 533 GYGTSLFKRLQRAGYP-------VKMLKTQYRMHPEVRSFPSREFYDEAL----EDGSDV 581
G G S +RL Y V L YR HPE+ PS+ FYD L ED V
Sbjct: 591 GLGKSYLERLFECDYYCEGDENYVTKLVKNYRCHPEILDLPSKLFYDGELVASKEDTDSV 650
Query: 582 EDYTTRDWHEYRCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISMYPQLK 641
+ ++ + F P F+ I +G + + + SW N E+ V+ +L +
Sbjct: 651 --LASLNFLPNKEF-PMVFYGI-QGCDEREGNNPSWFNRIEISKVIETIKRLTAN--DCV 704
Query: 642 SSSQLAIISPYRHQVKQFQERFKETFGVESQKVVDITTVDGCQGREKDVAIFSCVRASDK 701
+ +I+PYR QV + +E E V + +V+ QG+EK V I S VR++ K
Sbjct: 705 QEEDIGVITPYRQQVMKIKEVLDRLDMTE----VKVGSVEQFQGQEKQVIIISTVRSTIK 760
Query: 702 KS-------IGFLADYRRMNVGITRAKSSILVVGCASTLREDKHWNNLVKSAEKQDCLFR 754
+ +GFL++ RR NV ITRA S ++++G + +D +WN L+ +
Sbjct: 761 HNEFDRAYCLGFLSNPRRFNVAITRAISLLVIIGNPHIICKDMNWNKLLWRCVDNNAYQG 820
Query: 755 VSKPYASFFSDENLESMRKNATTDNVQGADGHVPHDDETMHYANTGDADQGQADD 809
P F +E + Q + P + N+G+ + G A++
Sbjct: 821 CGLPEQEEFVEEPFK-----------QEGSSNGPQYPPEAEWNNSGELNNGGANE 864
>sp|P51530|DNA2_HUMAN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Homo sapiens
GN=DNA2 PE=1 SV=3
Length = 1060
Score = 133 bits (334), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 110/384 (28%), Positives = 178/384 (46%), Gaps = 61/384 (15%)
Query: 376 VLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVRIG-LKAHHSVNSVAIDHLVEQKR 434
VL+ + ++SA+D I+L+L I +R+G ++ H AI EQ+
Sbjct: 672 VLLTSYTHSAVDNILLKLAKFKI----------GFLRLGQIQKVHP----AIQQFTEQEI 717
Query: 435 DDSAADKQKHGATRKDRDSIRSAILNEAVIVCSTLSFSGSALLSKLNHGFDVVIIDEAAQ 494
S + K ++ + N +IV +T + S+ FD I+DEA+Q
Sbjct: 718 CRSKSIKSL---------ALLEELYNSQLIVATTCMGINHPIFSR--KIFDFCIVDEASQ 766
Query: 495 AVEPATLVPLATGCKQVFLVGDPVQLPATVISPVAEHLGYGTSLFKRLQRAGYPVKMLKT 554
+P L PL ++ LVGD QLP V++ A LG SLFKRL++ V L
Sbjct: 767 ISQPICLGPLFFS-RRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQNKSAVVQLTV 825
Query: 555 QYRMHPEVRSFPSREFYDEALEDGSD---------------------VEDYTTRDWHE-- 591
QYRM+ ++ S ++ Y+ LE GSD DY+ W
Sbjct: 826 QYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLRHFKDVKLELEFYADYSDNPWLMGV 885
Query: 592 YRCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISMYPQLKSS-SQLAIIS 650
+ P F + + + G N+ E ++ L S++ + S S + II+
Sbjct: 886 FEPNNPVCFLNTDKVPAPEQVEKGGVSNVTEAKLIVF----LTSIFVKAGCSPSDIGIIA 941
Query: 651 PYRHQVKQFQERFKETFGVESQKVVDITTVDGCQGREKDVAIFSCVRASDKKSIG-FLAD 709
PYR Q+K + + G +V++ TVD QGR+K + + S VR++ ++G L D
Sbjct: 942 PYRQQLKIINDLLARSIG-----MVEVNTVDKYQGRDKSIVLVSFVRSNKDGTVGELLKD 996
Query: 710 YRRMNVGITRAKSSILVVGCASTL 733
+RR+NV ITRAK ++++GC +L
Sbjct: 997 WRRLNVAITRAKHKLILLGCVPSL 1020
Score = 37.0 bits (84), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 258 NASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAILHA 299
N Q +A+ + LL K + LI G PGTGKT TI L+ IL+A
Sbjct: 627 NKPQRQAMKKVLLSKDYTLIVGMPGTGKTTTICTLVR-ILYA 667
>sp|Q1LXK4|M10B1_DANRE Putative helicase mov-10-B.1 OS=Danio rerio GN=mov10b.1 PE=2 SV=2
Length = 1013
Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 121/415 (29%), Positives = 188/415 (45%), Gaps = 79/415 (19%)
Query: 375 RVLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVRIGLKAHHSVNSVAIDHLVEQKR 434
R+L CAPSNSA D++ +L+ + V++ I + R
Sbjct: 575 RILACAPSNSAADQLGEKLITS----------------------QHVDARNIYRIYASSR 612
Query: 435 DDSAADKQKHGATRKDRDSI----RSAILNEAVIVCSTLSFSGSALLSKLNHG-FDVVII 489
+ K + + ++I + ++ ++VC TL +G + G F + +
Sbjct: 613 NPKEIPKVLENNSNVEGENIIFPCKEDLMPYKIVVC-TLVTAGRLVSGGFPVGHFSHIFV 671
Query: 490 DEAAQAVEPATLVPLA------TGCKQVFLVGDPVQLPATVISPVAEHLGYGTSLFKRLQ 543
DEA AVEP ++ +A TG Q+ L GDP QL + SP A G G SL +RL
Sbjct: 672 DEAGHAVEPEIVISVAGLLNAETG--QLVLAGDPKQLGPILRSPFAIKYGLGLSLLERLM 729
Query: 544 RAG-------------YPVKMLKTQYRMHPEVRSFPSREFYDEALEDGSD---VEDYTTR 587
Y K+L+ YR HP + P+ FYD L+ +D Y T
Sbjct: 730 TQNELYQKGDTGFDNRYVTKLLQN-YRSHPSILKVPNELFYDNELKACADEISSRQYCTW 788
Query: 588 DWHEYRCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISMYPQLK------ 641
+ R F P F + GK+ + + S S+ N E+D ++ KL + Q K
Sbjct: 789 EHLPKRGF-PVIFHGV-VGKDERESTSPSFFNTSEIDKIMDYLKKL--LLTQAKKGIAKI 844
Query: 642 SSSQLAIISPYRHQVKQFQE------RFKETFGVESQKVVDITTVDGCQGREKDVAIFSC 695
S + II+PYR QV++ ++ K G+E KV +V+ QG+E+ V I S
Sbjct: 845 SPKDIGIIAPYRKQVEKIRQAIKIHRELKSLSGIEELKV---GSVEEFQGQERKVIIVST 901
Query: 696 VRAS-------DKKSIGFLADYRRMNVGITRAKSSILVVGCASTLREDKHWNNLV 743
VR+S DK +IGFL + +R NV +TRAK+ +++VG LR D+ W +
Sbjct: 902 VRSSKEHIILDDKFNIGFLKNEKRFNVAVTRAKALLIMVGNPIILRTDEIWGRFM 956
>sp|P34243|HCS1_YEAST DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HCS1 PE=1
SV=1
Length = 683
Score = 130 bits (327), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 125/421 (29%), Positives = 197/421 (46%), Gaps = 81/421 (19%)
Query: 375 RVLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVRIGLKAH-------HSVN----- 422
R+L+C PSN ++D I+ RL T + N+ ++RIG A HS++
Sbjct: 254 RILICGPSNISVDTILERL--TPLVPNNL------LLRIGHPARLLDSNKRHSLDILSKK 305
Query: 423 -------SVAIDHLVEQKRDDSAADKQKHG-----ATRKDRD-----SIRSAILNEAVIV 465
S ID L+++ + ++K RKD +I+ I+ ++ IV
Sbjct: 306 NTIVKDISQEIDKLIQENKKLKNYKQRKENWNEIKLLRKDLKKREFKTIKDLII-QSRIV 364
Query: 466 CSTLSFSGSALLSKLNHG------FDVVIIDEAAQAVEPATLVPLATGCKQ---VFLVGD 516
+TL S S L L FD +IIDE +QA+EP +PL Q + L GD
Sbjct: 365 VTTLHGSSSRELCSLYRDDPNFQLFDTLIIDEVSQAMEPQCWIPLIAHQNQFHKLVLAGD 424
Query: 517 PVQLPATVISPVAEHLGYG--TSLFKRLQRAGYP----VKMLKTQYRMHPEVRSFPSREF 570
QLP T+ + +++ + T+LF R+ + +P VK L QYRM+ ++ FPS
Sbjct: 425 NKQLPPTIKTEDDKNVIHNLETTLFDRIIKI-FPKRDMVKFLNVQYRMNQKIMEFPSHSM 483
Query: 571 YD-----------EALEDGSDVEDYTTRDWHEYRCFGPFSFFDIHEGKESQPAGS----- 614
Y+ L D V+ + D + + P ++D +G E Q
Sbjct: 484 YNGKLLADATVANRLLIDLPTVDATPSEDDDDTKI--PLIWYDT-QGDEFQETADEATIL 540
Query: 615 GSWINIDEVDFVLLLFHKLISM-YPQLKSSSQLAIISPYRHQVKQFQERFKETFGVESQK 673
GS N E+ V L S P+ + + +ISPY QV ++ + +
Sbjct: 541 GSKYNEGEIAIVKEHIENLRSFNVPE----NSIGVISPYNAQVSHLKKLIHDELKLTD-- 594
Query: 674 VVDITTVDGCQGREKDVAIFSCVRASDKKSIGFLADYRRMNVGITRAKSSILVVGCASTL 733
++I+TVDG QGREKDV I S VR+++K +GFL + RR+NV +TR + ++VVG L
Sbjct: 595 -IEISTVDGFQGREKDVIILSLVRSNEKFEVGFLKEERRLNVAMTRPRRQLVVVGNIEVL 653
Query: 734 R 734
+
Sbjct: 654 Q 654
Score = 40.4 bits (93), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 197 RLFSLKICSLSTIAREYLALRSVGSL--PFKDLILS--ASEKSSGSQDQSWKIPGLLHEY 252
+L+ LK ++ T R +R + + P +D I+ +E+ S++ + +
Sbjct: 147 KLYILKTTNVVTYNRMESTMRKLSEISSPIQDKIIQYLVNERPFIPNTNSFQN---IKSF 203
Query: 253 IKENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAILHATP 301
+ N N SQ AI+ + +I GPPGTGKT T++ L+ +L P
Sbjct: 204 LNPNLNDSQKTAINFAI-NNDLTIIHGPPGTGKTFTLIELIQQLLIKNP 251
>sp|P40694|SMBP2_MOUSE DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1
Length = 993
Score = 130 bits (327), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 124/431 (28%), Positives = 188/431 (43%), Gaps = 80/431 (18%)
Query: 364 EVVNSSRRYRVRVLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVRIGLKA------ 417
E++ + + ++VL CAPSN A+D +V RL R I+R+G A
Sbjct: 225 EIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKKR----------ILRLGHPARLLESV 274
Query: 418 -HHSVNSVAIDH-----LVEQKRD-DSAADKQKHGATRKDRDSIRSAI---------LNE 461
HHS+++V + + +RD D K K ++++ + RS I E
Sbjct: 275 QHHSLDAVLARSDNAQIVADIRRDIDQVFGKNKKTQDKREKGNFRSEIKLLRKELKEREE 334
Query: 462 AVIVCSTLSFSGSALLSKLNHG--------------FDVVIIDEAAQAVEPATLVPLATG 507
A IV S + + ++ N G FDVV++DE AQA+E + +PL
Sbjct: 335 AAIV---QSLTAADVVLATNTGASSDGPLKLLPEDYFDVVVVDECAQALEASCWIPLLKA 391
Query: 508 CKQVFLVGDPVQLPATVISPVAEHLGYGTSLFKRL--QRAGYPVKMLKTQYRMHPEVRSF 565
K L GD QLP T +S A G SL +RL + V+ML QYRMH + +
Sbjct: 392 PK-CILAGDHRQLPPTTVSHRAALAGLSRSLMERLAEKHGAGVVRMLTVQYRMHQAIMCW 450
Query: 566 PSREFYDEALEDGSDVEDYTTRDW------HEYRCFGPFSFFDIH-------EGKESQPA 612
S Y V + +D E R P D E ++SQ
Sbjct: 451 ASEAMYHGQFTSHPSVAGHLLKDLPGVTDTEETRV--PLLLIDTAGCGLLELEEEDSQSK 508
Query: 613 GSGSWINIDEVDFVLLLFHKLISMYPQLKSSSQLAIISPYRHQVKQFQERFKETFGVESQ 672
G N EV V L L+ Q + +A+I+PY QV ++
Sbjct: 509 G-----NPGEVRLVTLHIQALVDAGVQ---AGDIAVIAPYNLQVDLLRQSLSN-----KH 555
Query: 673 KVVDITTVDGCQGREKDVAIFSCVRASDKKSIGFLADYRRMNVGITRAKSSILVVGCAST 732
++I +VDG QGREK+ + + VR++ K +GFLA+ RR+NV +TRA+ + V+ + T
Sbjct: 556 PELEIKSVDGFQGREKEAVLLTFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSHT 615
Query: 733 LREDKHWNNLV 743
+ LV
Sbjct: 616 VNNHAFLETLV 626
Score = 39.3 bits (90), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Query: 226 DLILSASEKSSGSQDQSWKIPGLLHEYIKENHNASQLEAIHEGLLRKAFVLIQGPPGTGK 285
D++L +S S + +IP L + + SQ EA+ L +K +I GPPGTGK
Sbjct: 167 DILLGSSTPSP-----AMEIPPL--SFYNTTLDLSQKEAVSFALAQKELAIIHGPPGTGK 219
Query: 286 TQTILGLL 293
T T++ ++
Sbjct: 220 TTTVVEII 227
>sp|Q5ZKG3|DNA2_CHICK DNA replication ATP-dependent helicase/nuclease DNA2 OS=Gallus
gallus GN=DNA2 PE=2 SV=2
Length = 992
Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 136/278 (48%), Gaps = 30/278 (10%)
Query: 484 FDVVIIDEAAQAVEPATLVPLATGCKQVFLVGDPVQLPATVISPVAEHLGYGTSLFKRLQ 543
FD I+DEA+Q +P L PL K+ LVGD QLP V + A LG SLFKRL+
Sbjct: 725 FDFCIVDEASQISQPICLGPLFCS-KRFVLVGDHQQLPPLVQNSEARDLGMSESLFKRLE 783
Query: 544 RAGYPVKMLKTQYRMHPEVRSFPSREFYDEALEDGSDVEDYTTRDWHEYRCFGPFSFFDI 603
+ V L QYRM+ ++ S ++ Y+ LE GS+ T + + F D
Sbjct: 784 QNQNAVVQLTVQYRMNSKIMSLSNKLVYEGKLECGSEKVSNATANLPNLKMLK-LEFAD- 841
Query: 604 HEGKESQPAGSGSWIN--IDEVDFVLLLFHKLISMYPQLKSSSQLAIISPYRHQVK---Q 658
S +W+ ++ V L + P S + IISPYRHQ+K
Sbjct: 842 ---------ASKTWLKEVLEPDKPVCFLNTEKAGCRP-----SDIGIISPYRHQLKVITD 887
Query: 659 FQERFKETFGVESQKVVDITTVDGCQGREKDVAIFSCVRASDKKSIG-FLADYRRMNVGI 717
R KE V++ T+D QGR+K + I S VR S+ +++G L D+RR+NV I
Sbjct: 888 LMARLKENR-------VEVNTIDKYQGRDKSIIIVSFVRNSNDENLGALLKDWRRLNVAI 940
Query: 718 TRAKSSILVVGCASTLREDKHWNNLVKSAEKQDCLFRV 755
TRAK +++VGC +LR L+ + + +F +
Sbjct: 941 TRAKHKLIMVGCVPSLRRYPPLEKLLCHLQSEAMIFNL 978
Score = 35.8 bits (81), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 258 NASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLL 293
N Q +A+ + LL + + LI G PGTGKT TI L+
Sbjct: 596 NKPQKQAMKQVLLSRDYTLIVGMPGTGKTTTICALV 631
>sp|P32644|ECM32_YEAST Putative ATP-dependent RNA helicase ECM32 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ECM32 PE=1 SV=1
Length = 1121
Score = 127 bits (320), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 128/444 (28%), Positives = 200/444 (45%), Gaps = 90/444 (20%)
Query: 376 VLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVRIGLKAH-------HSVNSVAIDH 428
+L A SN A+D I +++ EN KI+RI K H + + + +
Sbjct: 696 ILCVAASNIAIDNIAEKIM------ENRPQI--KILRILSKKKEQQYSDDHPLGEICLHN 747
Query: 429 LVEQKRD---DSAADKQKHGAT---------RKDRDSIRSAILNEAVIVCSTLSFSGSAL 476
+V + A+K + G K+++ + + +++++ I+ +T +G
Sbjct: 748 IVYKNLSPDMQVVANKTRRGEMISKSEDTKFYKEKNRVTNKVVSQSQIIFTTNIAAGGRE 807
Query: 477 LSKLNHGFDVVIIDEAAQAVEPATLVPLA-TGCKQVFLVGDPVQLPATVISPVAEHLGYG 535
L K+ VVI+DEA Q+ E +TLVPL+ G + VGD QL + P E
Sbjct: 808 L-KVIKECPVVIMDEATQSSEASTLVPLSLPGIRNFVFVGDEKQLSSFSNIPQLE----- 861
Query: 536 TSLFKRLQRAGY---PVKMLKTQYRMHPEVRSFPSREFYDEALEDGSDVEDYTTRDWHEY 592
TSLF+R+ G P+ ML TQYRMHP++ FP ++ Y+ L+DG E + W
Sbjct: 862 TSLFERVLSNGTYKNPL-MLDTQYRMHPKISEFPIKKIYNGELKDGVTDEQ---KAWPGV 917
Query: 593 RCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLIS--------MYPQLKSSS 644
+ P F+ G ES+ + D V F H+ + M +
Sbjct: 918 Q--HPLFFYQCDLGPESRVRSTQR----DIVGFTYENKHECVEIVKIIQILMLDKKVPLE 971
Query: 645 QLAIISPYRHQ---------------VKQ--FQERFKE-----------TFGVESQKVVD 676
++ +I+PY Q KQ Q+ + E T G V++
Sbjct: 972 EIGVITPYSAQRDLLSDILTKNVVINPKQISMQQEYDEIELFNAAGSQGTAGSLQNNVIN 1031
Query: 677 I------TTVDGCQGREKDVAIFSCVRASDKKSIGFLADYRRMNVGITRAKSSILVVGCA 730
I TVD QG EK IFSCVR + + IGFL D RR+NV +TRAK ++VVG
Sbjct: 1032 IINGLHVATVDSFQGHEKSFIIFSCVRNNTENKIGFLRDKRRLNVALTRAKHGLIVVGNK 1091
Query: 731 STLRE-DKHWNNLVKSAEKQDCLF 753
+ LR+ D W + + E+Q+ +F
Sbjct: 1092 NVLRKGDPLWKDYITYLEEQEVIF 1115
Score = 36.6 bits (83), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 95/241 (39%), Gaps = 45/241 (18%)
Query: 57 TYKDVDDYLATFEPLLFEEVKAQIIQKKDEEEVQEWKLRLVMECGEADGFHLPSVTYEAD 116
+Y D++ YL + LF E QK + E VQ + ++ E D + +V +
Sbjct: 475 SYPDLNTYLNDYSFALFLE------QKLENEFVQNF--NILWPRNEKDTAFIINVEKNNN 526
Query: 117 -EVESISPNDLLLLSKEEFKEGSTF--------PTTYAFALVEHCQANLLRLRMYLAGEV 167
E+E + P +LL L + F E F Y F + ++ R + L E+
Sbjct: 527 SELEKLLPANLLALGRPAFNERQPFFFCTQDEQKVWYIFIK----ELSIQRGKYVLLVEL 582
Query: 168 IHINKDAVKSQRLLNIHSLITSSVSAVEKRLFSLKICSLSTIAREYLALRSVGSLPFKDL 227
N ++ ++ + L+ +S +R A+ + + F DL
Sbjct: 583 FSWNNLSLPTKNGSSQFKLLPTSAQT----------------SRILFAMTRITNPKFIDL 626
Query: 228 ILSASEKSSGSQDQSWKIPGLLHEYIKENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQ 287
+L D K + + N SQ A+ E +L + ++QGPPGTGKT
Sbjct: 627 LLGQKPIKEIYFDNRLK-------FSSDKLNRSQKTAV-EHVLNNSITILQGPPGTGKTS 678
Query: 288 T 288
T
Sbjct: 679 T 679
>sp|D3ZG52|DNA2_RAT DNA replication ATP-dependent helicase/nuclease DNA2 OS=Rattus
norvegicus GN=Dna2 PE=3 SV=1
Length = 1059
Score = 127 bits (320), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 135/273 (49%), Gaps = 30/273 (10%)
Query: 484 FDVVIIDEAAQAVEPATLVPLATGCKQVFLVGDPVQLPATVISPVAEHLGYGTSLFKRLQ 543
FD I+DEA+Q +P L PL ++ LVGD QLP V++ A LG SLFKRL+
Sbjct: 756 FDFCIVDEASQISQPICLGPLFFS-RRFVLVGDHKQLPPLVLNREARALGMSESLFKRLE 814
Query: 544 RAGYPVKMLKTQYRMHPEVRSFPSREFYDEALEDGSD-------------------VEDY 584
R V L QYRM+ ++ S ++ Y+ LE GSD DY
Sbjct: 815 RNESAVVQLTIQYRMNRKIMSLSNKLTYEGKLECGSDRVANAVITLPNLKDVRLEFYADY 874
Query: 585 TTRDWHE--YRCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISMYPQLKS 642
+ W + P F + + + +G N+ E ++ L I S
Sbjct: 875 SDNPWLAGVFEPDNPVCFLNTDKVPAPEQIENGGVSNVTEARLIVFLTSTFIKAGC---S 931
Query: 643 SSQLAIISPYRHQVKQFQERFKETFGVESQKVVDITTVDGCQGREKDVAIFSCVRASDKK 702
S + II+PYR Q++ + + S +V++ TVD QGR+K + + S VR+++
Sbjct: 932 PSDIGIIAPYRQQLRTITDLLARS----SVGMVEVNTVDKYQGRDKSLILVSFVRSNEDG 987
Query: 703 SIG-FLADYRRMNVGITRAKSSILVVGCASTLR 734
++G L D+RR+NV ITRAK ++++G S+L+
Sbjct: 988 TLGELLKDWRRLNVAITRAKHKLILLGSVSSLK 1020
Score = 36.6 bits (83), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 258 NASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLL 293
N Q +A+ + LL K + LI G PGTGKT TI L+
Sbjct: 627 NKPQRQAMKKVLLSKDYTLIVGMPGTGKTTTICALV 662
>sp|Q9EQN5|SMBP2_RAT DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1
SV=1
Length = 988
Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 122/429 (28%), Positives = 186/429 (43%), Gaps = 76/429 (17%)
Query: 364 EVVNSSRRYRVRVLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVRIGLKA------ 417
E++ + + ++VL CAPSN A+D +V RL +I+R+G A
Sbjct: 225 EIILQAVKQGLKVLCCAPSNIAVDNLVERLALC----------KKQILRLGHPARLLESV 274
Query: 418 -HHSVNSVAIDH-----LVEQKRD-DSAADKQKHGATRKDRDSIRSAI---------LNE 461
HS+++V + + +RD D K K ++++ + R+ I E
Sbjct: 275 QQHSLDAVLARSDNAQIVADIRRDIDQVFGKNKKTQDKREKSNFRNEIKLLRKELKEREE 334
Query: 462 AVIVCSTLSFSGSALLSKLNHG--------------FDVVIIDEAAQAVEPATLVPLATG 507
A IV S S + ++ N G FDVV++DE AQA+E + +PL
Sbjct: 335 AAIV---QSLSAADVVLATNTGASTDGPLKLLPEDYFDVVVVDECAQALEASCWIPLLKA 391
Query: 508 CKQVFLVGDPVQLPATVISPVAEHLGYGTSLFKRL--QRAGYPVKMLKTQYRMHPEVRSF 565
K L GD QLP T +S A G SL +RL + V+ML QYRMH + +
Sbjct: 392 PK-CILAGDHKQLPPTTVSHKAALAGLSRSLMERLAEKHGAAVVRMLAVQYRMHQAITRW 450
Query: 566 PSREFYDEALEDGSDVEDYTTRDW----HEYRCFGPFSFFDIH-------EGKESQPAGS 614
S Y L V + +D P D E ++SQ G
Sbjct: 451 ASEAMYHGQLTAHPSVAGHLLKDLPGVADTEETSVPLLLIDTAGCGLLELEEEDSQSKG- 509
Query: 615 GSWINIDEVDFVLLLFHKLISMYPQLKSSSQLAIISPYRHQVKQFQERFKETFGVESQKV 674
N EV V L L+ Q + +A+I+PY QV ++
Sbjct: 510 ----NPGEVRLVTLHIQALVDAGVQ---AGDIAVIAPYNLQVDLLRQSLSN-----KHPE 557
Query: 675 VDITTVDGCQGREKDVAIFSCVRASDKKSIGFLADYRRMNVGITRAKSSILVVGCASTLR 734
++I +VDG QGREK+ I + VR++ K +GFLA+ RR+NV +TRA+ + V+ + T+
Sbjct: 558 LEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSHTVN 617
Query: 735 EDKHWNNLV 743
LV
Sbjct: 618 NHAFLKTLV 626
Score = 38.5 bits (88), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 226 DLILSASEKSSGSQDQSWKIPGLLHEYIKENHNASQLEAIHEGLLRKAFVLIQGPPGTGK 285
D++L S S ++ IP L + + SQ EA+ L +K +I GPPGTGK
Sbjct: 167 DVLLGGSTPSPATE-----IPPLT--FYNTTLDPSQKEAVSFALAQKEVAIIHGPPGTGK 219
Query: 286 TQTILGLL 293
T T++ ++
Sbjct: 220 TTTVVEII 227
>sp|Q1LXK5|M10B2_DANRE Putative helicase mov-10-B.2 OS=Danio rerio GN=mov10b.2 PE=3 SV=1
Length = 1015
Score = 127 bits (318), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 123/444 (27%), Positives = 205/444 (46%), Gaps = 68/444 (15%)
Query: 376 VLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVRIGLKAHHSVNSVAIDHLVEQKRD 435
+L CAPSNSA D++ +L+ + E++ ++ KI R+ S N I ++ +D
Sbjct: 581 ILACAPSNSAADQLCEKLITS----EHVDAH--KIYRL---YASSRNQKDIPKIL---KD 628
Query: 436 DSAADKQKHGATRKDRDSIRSAILNEAVIVCSTLS----FSGSALLSKLNHGFDVVIIDE 491
+ D++ K+ +++ +++C+ ++ +G H F +DE
Sbjct: 629 NCNVDEEMIDFPCKE------DLMSYKILICTLVTAGRLVTGGFSEDHFTHNF----VDE 678
Query: 492 AAQAVEPATLVPLATGCK----QVFLVGDPVQLPATVISPVAEHLGYGTSLFKRL--QRA 545
A AVE T++ +A Q+ L GDP QL + SP+A + G SL +RL Q
Sbjct: 679 AGHAVESETIISVAGLLNAEKGQLVLAGDPKQLGPILRSPLAINHGLDVSLLERLMTQND 738
Query: 546 GYP----------VKMLKTQYRMHPEVRSFPSREFYDEALEDGSD-VEDYTTRDWHEYRC 594
Y V L YR HP + P+R FYD L+ +D + W
Sbjct: 739 LYKRGDVEFDNRYVSKLIMNYRSHPYILEVPNRLFYDGELKACADEISSNQYCMWEHLPS 798
Query: 595 FGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISMYPQLKSS----SQLAIIS 650
G F GK+ + + S S+ NI E++ ++ KL+ P+ S + II+
Sbjct: 799 KGFPVIFHGVPGKDERESNSPSFFNIYEINILVDYLKKLLLTQPKKGISRIFPKDIGIIA 858
Query: 651 PYRHQVKQFQ------ERFKETFGVESQKVVDITTVDGCQGREKDVAIFSCVRASDKK-- 702
PYR QV++ + + F++ G+++ KV +V+ QG+E+ V + S VR+S K
Sbjct: 859 PYRKQVEKIKRAIDADKDFQDYMGIDNLKV---GSVEEFQGQERKVIMVSTVRSSVKYIS 915
Query: 703 -----SIGFLADYRRMNVGITRAKSSILVVGCASTLREDKHWNNLVKSAEKQDCLFRVSK 757
+IGFL + +R NV +TRAKS +++VG LR D+ W + CL R
Sbjct: 916 LDETFNIGFLKNEKRFNVAVTRAKSLLIMVGNPMILRTDESWGRFIDF-----CLERGGY 970
Query: 758 PYASFFSDENLESMRKNATTDNVQ 781
S S E ++ + N+Q
Sbjct: 971 TGISITSVERIDDVESRLLALNIQ 994
>sp|Q6J5K9|ARMI_DROME Probable RNA helicase armi OS=Drosophila melanogaster GN=armi PE=2
SV=3
Length = 1274
Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 120/426 (28%), Positives = 194/426 (45%), Gaps = 55/426 (12%)
Query: 375 RVLVCAPSNSALDEIVLRLLNTG--IRDENIRSYTPKIVRIGLKAHHSVNSVAIDHLVEQ 432
R+LV PSNS+ D + RL+++ ++ + IR + V L ++ A +
Sbjct: 834 RILVGTPSNSSADLVTKRLIDSKALLQGDFIRLVSYNQVEKDLIPPEIMSYCATSDVGAV 893
Query: 433 KRDDSAADKQKHGATRKDRDSIRSAILNEAVIVCSTLSFSGSALLSKLNHG-FDVVIIDE 491
+ + G + ++ + I ST + G+ L G F V+ DE
Sbjct: 894 GSCEDKMMVTESGLKLR----CQAKFIGTHRITISTCTTLGNFLQLGFPAGHFTHVLFDE 949
Query: 492 AAQAVEPATLVPLATGCK---QVFLVGDPVQLPATVISPVAEHLGYGTSLFKRL------ 542
A Q EP T+VP+ K QV L GDP QL + V S +A +G+ S +RL
Sbjct: 950 AGQCTEPETMVPIVMLTKKRSQVVLSGDPRQLQSIVTSRIASKMGFSISFLERLLERSPY 1009
Query: 543 --------QRAGY-PVKMLKT--QYRMHPEVRSFPSREFYD-EALEDGSDVEDYTTRDWH 590
+ +GY P+ + K YR P + S SR FYD E + S+ + +R
Sbjct: 1010 RKDLQRFPESSGYNPLVLTKLLYNYRALPSIMSIYSRLFYDDELIPVLSEKDSRESRLLS 1069
Query: 591 EYRCF-----------GPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISMYPQ 639
+ RC G F F+ I G+ Q S SW N EV V L+ I++Y
Sbjct: 1070 KLRCVFESEKDIPQAHGTF-FYGII-GENRQNNDSPSWFNPQEVREVFLM---TIALYRA 1124
Query: 640 LKSSSQLAIISPYRHQVKQFQERFKETFGVESQKVVDITTVDGCQGREKDVAIFSCVRAS 699
++ Q+ II+PY+ QVK + F T V + I +V+ QG+E+D+ + S VR+S
Sbjct: 1125 NVTADQIGIITPYQKQVKMLRSMFIGTDVVMPK----IGSVEEFQGQERDIILISTVRSS 1180
Query: 700 D-------KKSIGFLADYRRMNVGITRAKSSILVVGCASTLREDKHWNNLVKSAEKQDCL 752
+ + S+GF+ +R+NV ++RA++ +++ G L D+ W L+ K +
Sbjct: 1181 EEILRMDARFSLGFVRCSKRLNVAVSRARAMMIIFGNPHLLAVDECWRQLILFCVKNNAY 1240
Query: 753 FRVSKP 758
F P
Sbjct: 1241 FGCDLP 1246
>sp|Q5ZKD7|MOV10_CHICK Putative helicase MOV-10 OS=Gallus gallus GN=MOV10 PE=2 SV=1
Length = 967
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 124/420 (29%), Positives = 189/420 (45%), Gaps = 77/420 (18%)
Query: 375 RVLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVRIGLKAHHSVNSVAIDHLVEQKR 434
R+L CAPSNSA D + RLL NI P+ + + + + V D
Sbjct: 541 RILACAPSNSAADLLCQRLLT------NI---APRYIYRIMASSANYKDVPADVRPCCNW 591
Query: 435 DDSAADKQKHGATRKDRDSIRSAILNEAVIVCSTLSFSGSALLSKLNHG-FDVVIIDEAA 493
DDS +K ++K +L I+ +TL +G + + G F V IDE
Sbjct: 592 DDS--EKCYVYPSKK--------LLKPYRILITTLVTAGRLVSANFPPGYFSHVFIDECG 641
Query: 494 QAVEPATLVPLA-----------TGCKQVFLVGDPVQLPATVISPVAEHLGYGTSLFKRL 542
AVEP ++V +A Q+ L GDP QL SP+A G GTSL +RL
Sbjct: 642 HAVEPESVVAIAGLLTTMDPDTNPNGGQLVLAGDPQQLGPVPRSPLAAQHGLGTSLLERL 701
Query: 543 QR---------AGYP---VKMLKTQYRMHPEVRSFPSREFYDEALE--DGS--DVEDYTT 586
GY V L YR H + P+ FYD L+ +GS DV ++
Sbjct: 702 MLHNALYAKSDEGYNPQFVTKLLWNYRSHKAILKVPNELFYDSELKAYEGSEPDVRNFYC 761
Query: 587 RDWHEYRCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISMY-----PQLK 641
W E G F G++ + A S S+ N E++ V+ KL+ P +
Sbjct: 762 -TWEELPNRGVPIIFHGVCGEDEREAKSPSFFNTAEIEVVVQYLQKLLQSQGRRGCPTI- 819
Query: 642 SSSQLAIISPYRHQVKQFQERFKETFGVESQKVV----------DITTVDGCQGREKDVA 691
S ++ IISPYR QV++ + + S+ V + +V+ QG+E+ V
Sbjct: 820 SPKEIGIISPYRKQVEKIR------LAITSKDPVLRALPDIGQLKVGSVEEFQGQERRVI 873
Query: 692 IFSCVRASDKK-------SIGFLADYRRMNVGITRAKSSILVVGCASTLREDKHWNNLVK 744
+ S VR+ + +GFL + +R+NV +TRAK+ ++VVG A+ L +D HW+ ++
Sbjct: 874 LISTVRSCSEYLQLDQTFRLGFLKNPKRLNVALTRAKALLIVVGNAAVLSKDPHWHRFLR 933
>sp|Q60560|SMBP2_MESAU DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1
SV=1
Length = 989
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 121/427 (28%), Positives = 185/427 (43%), Gaps = 72/427 (16%)
Query: 364 EVVNSSRRYRVRVLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVRIGLKA------ 417
E++ + + +++L CAPSN A+D +V RL R I+R+G A
Sbjct: 225 EIILQAVKQGLKILCCAPSNVAVDNLVERLALCKKR----------ILRLGHPARLLESA 274
Query: 418 -HHSVNSVAIDH-----LVEQKRD-DSAADKQKHGATRKDRDSIRSAI------------ 458
HS+++V + + ++D D K K ++++ + R+ I
Sbjct: 275 QQHSLDAVLARSDNAQIVADIRKDIDQVFGKNKKTQDKREKSNFRNEIKLLRKELKEREE 334
Query: 459 ------LNEAVIVCST---LSFSGSALLSKLNHGFDVVIIDEAAQAVEPATLVPLATGCK 509
L A +V +T S G L NH FDVV++DE AQA+E + +PL K
Sbjct: 335 AAIVQSLTAADVVLATNTGASSDGPLKLLPENH-FDVVVVDECAQALEASCWIPLLKAPK 393
Query: 510 QVFLVGDPVQLPATVISPVAEHLGYGTSLFKRL--QRAGYPVKMLKTQYRMHPEVRSFPS 567
L GD QLP T IS A G SL +RL + V+ML QYRMH + + S
Sbjct: 394 -CILAGDHRQLPPTTISHKAALAGLSRSLMERLVEKHGAGAVRMLTVQYRMHQAITRWAS 452
Query: 568 REFYDEALEDGSDVEDYTTRDW----HEYRCFGPFSFFDIH-------EGKESQPAGSGS 616
Y L V + +D P D + ++SQ G
Sbjct: 453 EAMYHGQLTAHPSVAGHLLKDLPGVADTEETSVPLLLIDTAGCGLLELDEEDSQSKG--- 509
Query: 617 WINIDEVDFVLLLFHKLISMYPQLKSSSQLAIISPYRHQVKQFQERFKETFGVESQKVVD 676
N EV V L L+ + +A+I+PY QV ++ ++
Sbjct: 510 --NPGEVRLVTLHIQALVDAGVH---AGDIAVIAPYNLQVDLLRQSLSN-----KHPELE 559
Query: 677 ITTVDGCQGREKDVAIFSCVRASDKKSIGFLADYRRMNVGITRAKSSILVVGCASTLRED 736
I +VDG QGREK+ I + VR++ K +GFLA+ RR+NV +TRA+ + V+ + T+
Sbjct: 560 IKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTVNNH 619
Query: 737 KHWNNLV 743
LV
Sbjct: 620 AFLKTLV 626
Score = 37.0 bits (84), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 258 NASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLL 293
+ SQ EA+ L +K +I GPPGTGKT T++ ++
Sbjct: 192 DPSQKEAVSFALAQKEVAIIHGPPGTGKTTTVVEII 227
>sp|Q8QHA5|DNA2_XENLA DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus
laevis GN=dna2 PE=1 SV=1
Length = 1053
Score = 124 bits (311), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 112/386 (29%), Positives = 178/386 (46%), Gaps = 65/386 (16%)
Query: 376 VLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVRIGL--KAHHSVNSVAIDHLVEQK 433
VL+ + ++SA+D I+L+L + + +R+G K H V + + + + K
Sbjct: 673 VLLTSYTHSAVDNILLKL----------KKFQVGFLRLGRTQKLHPDVQEFSEEEICKAK 722
Query: 434 RDDSAADKQKHGATRKDRDSIRSAILNEAVIVCSTLSFSGSALLSKLNHGFDVVIIDEAA 493
S + ++ + N +V +T + ++ FD I+DEA+
Sbjct: 723 SIKSLSALEE--------------LYNSQPVVATTCMGVNHPIFTR--RRFDFCIVDEAS 766
Query: 494 QAVEPATLVPLATGCKQVFLVGDPVQLPATVISPVAEHLGYGTSLFKRLQRAGYPVKMLK 553
Q +P L PL + LVGD QLP V S A LG SLFKRL+R V L
Sbjct: 767 QISQPICLGPLFFA-DRFVLVGDHQQLPPLVKSAEARELGMSESLFKRLERNQEAVVQLT 825
Query: 554 TQYRMHPEVRSFPSREFYDEALEDGSD-VEDYTTRDWHEYRCFGPFSFFDIHEGKES--- 609
QYRM+ ++ + ++ Y+ LE SD V + + H F E +ES
Sbjct: 826 VQYRMNSKIMALSNKLVYEGRLECASDRVSNAVVQLPHIKTLLLELEF---RESQESMWI 882
Query: 610 ----QPAGSGSWINIDEVDFV--------------LLLFHKLISMYPQLKSS---SQLAI 648
+P+ ++N +++ + L+FH L +Y LK+ S + I
Sbjct: 883 KDVLEPSNPVCFLNTEKIPALETEEKGGISNWIEAKLVFH-LTKLY--LKAGCRPSDIGI 939
Query: 649 ISPYRHQVKQFQERFKETFGVESQKVVDITTVDGCQGREKDVAIFSCVRASDKKSIG-FL 707
I+PYR Q+K F S V++ TVD QGR+K V I S VR++ +G L
Sbjct: 940 IAPYRQQLKMISNYFNSL----SASAVEVNTVDKYQGRDKSVIIVSFVRSNIDGKLGDLL 995
Query: 708 ADYRRMNVGITRAKSSILVVGCASTL 733
D+RR+NV +TRAK ++++GC TL
Sbjct: 996 KDWRRLNVALTRAKHKLIMLGCVPTL 1021
Score = 36.6 bits (83), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 258 NASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAILHA 299
N Q +A+ LL K + LI G PGTGKT TI L+ IL+A
Sbjct: 628 NKPQKQAMKRVLLSKDYTLIVGMPGTGKTTTICTLVR-ILYA 668
>sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3
Length = 993
Score = 123 bits (309), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 122/431 (28%), Positives = 186/431 (43%), Gaps = 78/431 (18%)
Query: 364 EVVNSSRRYRVRVLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVRIGLKAH--HSV 421
E++ + + ++VL CAPSN A+D +V RL R I+R+G A S+
Sbjct: 226 EIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQR----------ILRLGHPARLLESI 275
Query: 422 NSVAIDHLVEQKRDDSA---AD----------KQKHGATRKDRDSIRSAI------LNEA 462
++D ++ R DSA AD K K ++++ + R+ I L E
Sbjct: 276 QQHSLDAVL--ARSDSAQIVADIRKDIDQVFVKNKKTQDKREKSNFRNEIKLLRKELKER 333
Query: 463 VIVCSTLSFSGSALLSKLNHG--------------FDVVIIDEAAQAVEPATLVPLATGC 508
S + + ++ N G FDVV+IDE AQA+E + +PL
Sbjct: 334 EEAAMLESLTSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQALEASCWIPLLKA- 392
Query: 509 KQVFLVGDPVQLPATVISPVAEHLGYGTSLFKRL--QRAGYPVKMLKTQYRMHPEVRSFP 566
++ L GD QLP T +S A G SL +RL + V+ L QYRMH + +
Sbjct: 393 RKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRTLTVQYRMHQAIMRWA 452
Query: 567 SREFYDEALEDGSDVEDYTTRDWHEYRCF------------GPFSFFDIHEGKESQPAGS 614
S Y L S V + RD F++ E E
Sbjct: 453 SDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLLLVDTAGCGLFELEEEDEQSKGNP 512
Query: 615 GSWINIDEVDFVLLLFHKLI-SMYPQLKSSSQLAIISPYRHQVKQFQERFKETFGVESQK 673
G EV V L L+ + P + +A++SPY QV ++ V
Sbjct: 513 G------EVRLVSLHIQALVDAGVP----ARDIAVVSPYNLQVDLLRQSL-----VHRHP 557
Query: 674 VVDITTVDGCQGREKDVAIFSCVRASDKKSIGFLADYRRMNVGITRAKSSILVVGCASTL 733
++I +VDG QGREK+ I S VR++ K +GFLA+ RR+NV +TRA+ + V+ + T+
Sbjct: 558 ELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTV 617
Query: 734 REDKHWNNLVK 744
LV+
Sbjct: 618 NNHAFLKTLVE 628
Score = 36.6 bits (83), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 258 NASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLL 293
+ SQ EA+ L +K +I GPPGTGKT T++ ++
Sbjct: 193 DTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEII 228
>sp|Q6ZQJ5|DNA2_MOUSE DNA replication ATP-dependent helicase/nuclease DNA2 OS=Mus musculus
GN=Dna2 PE=2 SV=2
Length = 1062
Score = 123 bits (308), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 133/275 (48%), Gaps = 32/275 (11%)
Query: 484 FDVVIIDEAAQAVEPATLVPLATGCKQVFLVGDPVQLPATVISPVAEHLGYGTSLFKRLQ 543
FD I+DEA+Q +P L PL ++ LVGD QLP V++ A LG SLFKRL+
Sbjct: 757 FDFCIVDEASQISQPVCLGPLFFS-RRFVLVGDHQQLPPLVVNREARALGMSESLFKRLE 815
Query: 544 RAGYPVKMLKTQYRMHPEVRSFPSREFYDEALEDGSD---------------------VE 582
R V L QYRM+ ++ S ++ Y LE GSD
Sbjct: 816 RNESAVVQLTVQYRMNRKIMSLSNKLTYAGKLECGSDRVANAVLALPNLKDARLSLQLYA 875
Query: 583 DYTTRDWHE--YRCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISMYPQL 640
DY+ W P F + + + +G N+ E ++ L I
Sbjct: 876 DYSDSPWLAGVLEPDNPVCFLNTDKVPAPEQVENGGVSNVTEARLIVFLTSTFIKAG--- 932
Query: 641 KSSSQLAIISPYRHQVKQFQERFKETFGVESQKVVDITTVDGCQGREKDVAIFSCVRASD 700
S S + +I+PYR Q++ + + S +V++ TVD QGR+K + + S VR+++
Sbjct: 933 CSPSDIGVIAPYRQQLRIISDLLARS----SVGMVEVNTVDKYQGRDKSLILVSFVRSNE 988
Query: 701 KKSIG-FLADYRRMNVGITRAKSSILVVGCASTLR 734
++G L D+RR+NV +TRAK ++++G S+L+
Sbjct: 989 DGTLGELLKDWRRLNVALTRAKHKLILLGSVSSLK 1023
Score = 36.2 bits (82), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 253 IKENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLL 293
I + N Q +A+ LL K + LI G PGTGKT TI L+
Sbjct: 623 ILKGLNKPQRQAMKRVLLSKDYTLIVGMPGTGKTTTICALV 663
>sp|Q9BXT6|M10L1_HUMAN Putative helicase Mov10l1 OS=Homo sapiens GN=MOV10L1 PE=1 SV=1
Length = 1211
Score = 119 bits (299), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 119/403 (29%), Positives = 176/403 (43%), Gaps = 67/403 (16%)
Query: 375 RVLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVRIGLKAHHSVNSVAIDHLVEQKR 434
R+LVCAPSNSA D + LRL + + +VR+ A + ID + R
Sbjct: 795 RILVCAPSNSAADLVCLRLHESKVLQ------PATMVRV--NATCRFEEIVIDAVKPYCR 846
Query: 435 DDSAADKQKHGATRKDRDSIRSAILNEAVIVCSTLSFSGSALLSKLNHG-FDVVIIDEAA 493
D D K R I+ +T S SG + G F V +DEA
Sbjct: 847 D--GEDIWKASRFR---------------IIITTCSSSGLFYQIGVRVGHFTHVFVDEAG 889
Query: 494 QAVEPATLVPLATGCK---QVFLVGDPVQLPATVISPVAEHLGYGTSLFKRLQ-RAGYP- 548
QA EP L+PL Q+ L GDP+QL + S +A G S +RL R Y
Sbjct: 890 QASEPECLIPLGLMSDISGQIVLAGDPMQLGPVIKSRLAMAYGLNVSFLERLMSRPAYQR 949
Query: 549 ---------------VKMLKTQYRMHPEVRSFPSREFYDEALEDGSDVEDYTTR-DWHEY 592
V L YR H + PSR FY LE +D T+ W +
Sbjct: 950 DENAFGACGAHNPLLVTKLVKNYRSHEALLMLPSRLFYHRELEVCADPTVVTSLLGWEKL 1009
Query: 593 RCFG-PFSFFDIHEGKESQPAGSGSWINIDE----VDFVLLLFHKLISMYPQLKSSSQLA 647
G P F + G E++ S SW N E + + LL H + S S+S +
Sbjct: 1010 PKKGFPLIFHGVR-GSEAREGKSPSWFNPAEAVQVLRYCCLLAHSISSQV----SASDIG 1064
Query: 648 IISPYRHQVKQFQERFKETFGVESQKVVDITTVDGCQGREKDVAIFSCVRAS------DK 701
+I+PYR QV++ + + ++ + + +V+ QG+E V I S VR++ D+
Sbjct: 1065 VITPYRKQVEKIRILLRNVDLMD----IKVGSVEEFQGQEYLVIIISTVRSNEDRFEDDR 1120
Query: 702 KSIGFLADYRRMNVGITRAKSSILVVGCASTLREDKHWNNLVK 744
+GFL++ +R NV ITR K+ ++V+G L D + L++
Sbjct: 1121 YFLGFLSNSKRFNVAITRPKALLIVLGNPHVLVRDPCFGALLE 1163
>sp|Q99MV5|M10L1_MOUSE Putative helicase Mov10l1 OS=Mus musculus GN=Mov10l1 PE=1 SV=1
Length = 1187
Score = 113 bits (283), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 112/403 (27%), Positives = 173/403 (42%), Gaps = 67/403 (16%)
Query: 375 RVLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPK---IVRIGLKAHHSVNSVAIDHLVE 431
R+LVCAPSNSA D + LRL + + PK +VR+ A ID +
Sbjct: 797 RILVCAPSNSAADLVCLRLHESKV---------PKPAAMVRVN--ATCRFEETIIDAIKP 845
Query: 432 QKRDDSAADKQKHGATRKDRDSIRSAILNEAVIVCST--LSFSGSALLSKLNHGFDVVII 489
RD D R++ + CS+ L + + H F +
Sbjct: 846 YCRDG--------------EDIWRASRFRIIITTCSSAGLFYQIGVRVGYFTHVF----V 887
Query: 490 DEAAQAVEPATLVPLATGCK---QVFLVGDPVQLPATVISPVAEHLGYGTSLFKRLQ-RA 545
DEA QA EP L+PL Q+ L GDP+QL + S +A G S+ +RL R
Sbjct: 888 DEAGQASEPECLIPLGLISDINGQIVLAGDPMQLGPVIKSRLAMAYGLNVSMLERLMSRP 947
Query: 546 GYP----------------VKMLKTQYRMHPEVRSFPSREFYDEALEDGSDVEDYTTR-D 588
Y V L YR H + + PSR FY LE +D + T+
Sbjct: 948 AYLRDENAFGACGAYNPLLVTKLVKNYRSHSALLALPSRLFYHRELEVCADPKVVTSLLG 1007
Query: 589 WHEYRCFG-PFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISMYPQLKSSSQLA 647
W + G P F + G E++ S SW + E V+ L SS +
Sbjct: 1008 WEKLPRKGFPLIFHGVR-GNEAREGRSPSWFSPAEAVQVMRYCCLLARSVSSQVSSKDIG 1066
Query: 648 IISPYRHQVKQFQERFKETFGVESQKVVDITTVDGCQGREKDVAIFSCVRAS------DK 701
+I+PYR QV++ + + + + + +V+ QG+E V + S VR++ D+
Sbjct: 1067 VITPYRKQVEKIKILLRNVDLTD----IKVGSVEEFQGQEYLVIVISTVRSNEDRFEDDR 1122
Query: 702 KSIGFLADYRRMNVGITRAKSSILVVGCASTLREDKHWNNLVK 744
+GFL++ +R NV ITR K+ ++++G L D + L++
Sbjct: 1123 YFLGFLSNSKRFNVAITRPKALLIILGNPHVLVRDPCFGALLE 1165
>sp|P23249|MOV10_MOUSE Putative helicase MOV-10 OS=Mus musculus GN=Mov10 PE=1 SV=2
Length = 1004
Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 117/419 (27%), Positives = 184/419 (43%), Gaps = 76/419 (18%)
Query: 373 RVRVLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVRIGLKAHHSVNSVAIDHLV-- 430
+ +L CAPSNS D + RL R + P + L + V D
Sbjct: 548 KAHILACAPSNSGADLLCQRL----------RVHLPSSIYRLLAPSRDIRMVPEDIKTCC 597
Query: 431 --EQKRDDSAADKQKHGATRKDRDSIRSAILNEAVIVCSTLSFSGSALLS---KLNHGFD 485
+ K+ + +KH L + ++ +TL + S L+S ++H F
Sbjct: 598 NWDAKKGEYVYPAKKH--------------LQQYRVLITTL-ITASRLVSAQFPIDH-FT 641
Query: 486 VVIIDEAAQAVEPATLVPLA-------TGCK--QVFLVGDPVQLPATVISPVAEHLGYGT 536
+ IDEA +EP +LV +A TG Q+ L GDP QL + SP+A G G
Sbjct: 642 HIFIDEAGHCMEPESLVAIAGLMDVKETGNPGGQLVLAGDPRQLGPVLRSPLALKHGLGY 701
Query: 537 SLFKRL---------QRAGYP---VKMLKTQYRMHPEVRSFPSREFYDEALEDGSDVEDY 584
SL +RL GY + L YR HP + P++ +YD L+ +DV D
Sbjct: 702 SLLERLLAYNSLYKKGPNGYDPQFITKLLRNYRSHPTILDIPNQLYYDGELQACADVVDR 761
Query: 585 TTR-DWHEYRCFG-PFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISMYPQLK- 641
W G P F + GK+ + S S+ N +E V +L++ P K
Sbjct: 762 ERFCRWEGLPQQGFPIIFHGVM-GKDEREGNSPSFFNPEEAATVTSYLKQLLA--PSSKK 818
Query: 642 -----SSSQLAIISPYRHQVKQFQERF----KETFGVESQKVVDITTVDGCQGREKDVAI 692
S + +ISPYR QV++ + +E G++ K + + +V+ QG+E+ V +
Sbjct: 819 GKARLSPRNVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVIL 878
Query: 693 FSCVRASDKK-------SIGFLADYRRMNVGITRAKSSILVVGCASTLREDKHWNNLVK 744
S VR+S ++GFL + +R NV +TRAK+ ++VVG L D W ++
Sbjct: 879 ISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPDWKTFLE 937
Score = 33.5 bits (75), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 258 NASQLEA---IHEGLLRKAFVLIQGPPGTGKTQTILGLLSAILHATP 301
N QL+A I G R A +I GPPGTGKT T++ + ++ P
Sbjct: 501 NPEQLQAMKHIVRGTTRPAPYIIFGPPGTGKTVTLVEAIKQVVKHLP 547
>sp|Q9BYK8|HELZ2_HUMAN Helicase with zinc finger domain 2 OS=Homo sapiens GN=HELZ2 PE=1 SV=6
Length = 2649
Score = 111 bits (278), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 152/563 (26%), Positives = 229/563 (40%), Gaps = 122/563 (21%)
Query: 241 QSWKIPGLLHEYIKENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAILHAT 300
Q++ IPG H+ N SQ A+ E L K F +IQGPPGTGKT L ++ +
Sbjct: 2142 QTYNIPGGRHKL-----NPSQNVAVREAL-EKPFTVIQGPPGTGKTIVGLHIVFWFHKSN 2195
Query: 301 PARVHSKGGLREIKRGPELPMHEKYNHWGRASPWLVGANPRDNIMPIDGDDGFFPTTGNE 360
+V G R KR P ++ P + +D G E
Sbjct: 2196 QEQVQPGGPPRGEKR--------------LGGPCILYCGPSNKS--VDVLAGLL-LRRME 2238
Query: 361 LKPEVVNSSRRYRVRVLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVRIGLKAHHS 420
LKP V S + A + V R+ + + ++ R P + S
Sbjct: 2239 LKPLRVYSEQ------------AEASEFPVPRVGSRKLLRKSPREGRP---------NQS 2277
Query: 421 VNSVAIDHLVEQKRDDSAADKQKHGATRKDRDSIRS--------AILNEA---------V 463
+ S+ + H + Q + +++ K TR R + S +L EA V
Sbjct: 2278 LRSITLHHRIRQAPNPYSSEI-KAFDTRLQRGELFSREDLVWYKKVLWEARKFELDRHEV 2336
Query: 464 IVCSTLSFSGSALLSKLNHGFDVVIIDEAAQAVEPATLVPLA--TGCKQVFLVGDPVQLP 521
I+C T S + SA L L+ +++DEA A EP TL+PL ++V L+GD QL
Sbjct: 2337 ILC-TCSCAASASLKILD--VRQILVDEAGMATEPETLIPLVQFPQAEKVVLLGDHKQLR 2393
Query: 522 ATVISPVAEHLGYGTSLFKRLQRAGYPVKMLKTQYRMHPEVRSFPSREFYDEALEDGSDV 581
V + ++LG SLF+R + ML TQYRMH + +FPS FY L
Sbjct: 2394 PVVKNERLQNLGLDRSLFERYHEDAH---MLDTQYRMHEGICAFPSVAFYKSKL------ 2444
Query: 582 EDYTTRDWHEYRCFGPFSFFDIHEGKESQPAGSG-------------------SWINIDE 622
+ W R P S H GKES P G S N++E
Sbjct: 2445 -----KTWQGLR--RPPSVLG-HAGKESCPVIFGHVQGHERSLLVSTDEGNENSKANLEE 2496
Query: 623 VDFVLLLFHKLI---SMYPQLKSSSQLAIISPYRHQVKQFQERFKETFGVESQKVVDITT 679
V V+ + +L ++ PQ +A+++PY Q + + + G+ V IT
Sbjct: 2497 VAEVVRITKQLTLGRTVEPQ-----DIAVLTPYNAQASEISKALRRE-GIAGVAVSSITK 2550
Query: 680 VDGCQGREKDVAIFSCVRASD----------KKSIGFLADYRRMNVGITRAKSSILVVGC 729
G + R V+ SD KK +GF+ D ++NV +TRA+ + ++G
Sbjct: 2551 SQGSEWRYVLVSTVRTCAKSDLDQRPTKSWLKKFLGFVVDPNQVNVAVTRAQEGLCLIGD 2610
Query: 730 ASTLREDKHWNNLVKSAEKQDCL 752
LR W +L+ E Q L
Sbjct: 2611 HLLLRCCPLWRSLLDFCEAQQTL 2633
Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 93/398 (23%), Positives = 153/398 (38%), Gaps = 50/398 (12%)
Query: 370 RRYRVRVLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVRIGLKAHHSVNSVAIDHL 429
RR +VL+C +NSA D + ++ + + + TP V + + V + +
Sbjct: 563 RRPETKVLICTHTNSAADIYIREYFHSHVSGGHPEA-TPLRVMYTDRPLSQTDPVTLQYC 621
Query: 430 VEQKRDDSAADKQKHGATRKDRDSIRSAILNEAVIVCSTLSFSGSALLSKLNHGFDVVII 489
DD A R R+ + V+V +T S + L F ++I
Sbjct: 622 C--LTDDRQA----------FRPPTRAELARHRVVVTTT---SQARELRVPVGFFSHILI 666
Query: 490 DEAAQAVEPATLVPLATGC--KQVFLVGDPVQLPATVISPVAEHLGYGTSLFKRL----Q 543
DEAAQ +E L PLA ++ L GD +Q+ + S VA +L RL Q
Sbjct: 667 DEAAQMLECEALTPLAYASHGTRLVLAGDHMQVTPRLFS-VARARAAEHTLLHRLFLCYQ 725
Query: 544 RAGYPVK-----MLKTQYRMHPEVRSFPSREFYDEALEDGSDVEDYTTRDWHEYRCFGPF 598
+ + V + YR + SF SR FY + G+ + H P
Sbjct: 726 QETHEVARQSRLVFHENYRCTDAIVSFISRHFY---VAKGNPIHARGKVPPHPRHY--PL 780
Query: 599 SFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISMYPQLKSSSQLAIISPYRH--QV 656
F + G + SW+N+ E+ V+ + + +P + I H QV
Sbjct: 781 MFCHV-AGSPDRDMSMASWLNLAEIAQVVEKVQEAYNTWPSCWGGREQRCICVVSHGAQV 839
Query: 657 KQFQERFKETFGVESQKVVDITTVDGCQGREKDVAIFSCVRASDK-KSIG-----FLADY 710
++ + V + + + GR+ V + S V S G F D
Sbjct: 840 SALRQELRR----RDLGQVSVGSFEILPGRQFRVVVLSTVHTCQSLLSPGALAPEFFTDA 895
Query: 711 RRMNVGITRAKSSILVVGCASTLRE----DKHWNNLVK 744
R +N +TRA+S ++VVG A L K W + ++
Sbjct: 896 RVLNTVLTRAQSQLVVVGDAVALCSFGACGKLWESFIR 933
>sp|Q0V8H6|MOV10_BOVIN Putative helicase MOV-10 OS=Bos taurus GN=MOV10 PE=2 SV=1
Length = 1003
Score = 110 bits (274), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 116/411 (28%), Positives = 179/411 (43%), Gaps = 70/411 (17%)
Query: 373 RVRVLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVRIGLKAHHSVNSVAIDHLVEQ 432
+ +L CAPSNS D + RL R + P + L + HLV +
Sbjct: 547 KAHILACAPSNSGADLLCQRL----------RVHLPSSIYRLLAPSRDI------HLVPE 590
Query: 433 KRDDSAADKQKHGATRKDRDSIRSAILNEAVIVCSTLSFSGSALLS---KLNHGFDVVII 489
K G D L E ++ +TL + S L+S ++H F + I
Sbjct: 591 DIKPCCNWDAKKG----DFVFPSKKKLQEYRVLITTL-ITASRLVSAQFPIDH-FTHIFI 644
Query: 490 DEAAQAVEPATLVPLA---------TGCKQVFLVGDPVQLPATVISPVAEHLGYGTSLFK 540
DEA A+EP +LV +A Q+ L GDP QL + P+ + G G SL +
Sbjct: 645 DEAGHAMEPESLVAIAGLMEVKEADNPGGQLVLAGDPRQLGPVLRCPLTQKHGLGYSLLE 704
Query: 541 RL-------------QRAGYPVKMLKTQYRMHPEVRSFPSREFYDEALEDGSDVEDYTTR 587
RL + K+L+ YR HP + P+R +YD L+ +DV D
Sbjct: 705 RLLTFNALYKKGPDGYNPQFITKLLRN-YRSHPTILDVPNRLYYDGELQACADVVDRERF 763
Query: 588 -DWHEY-RCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISMYPQLK---- 641
W R P F + GK+ + S S+ N +E V +L++ P K
Sbjct: 764 CRWEGLPRQDFPIIFHGVM-GKDEREGNSPSFFNPEEAATVTSYLKQLLA--PSSKKGKA 820
Query: 642 --SSSQLAIISPYRHQVKQFQERF----KETFGVESQKVVDITTVDGCQGREKDVAIFSC 695
S + +ISPYR QV++ + K+ G++ K + + +V+ QG+E+ V + S
Sbjct: 821 RLSPRSVGVISPYRKQVEKIRYCITKLDKQLRGLDDIKDLKVGSVEEFQGQERSVILIST 880
Query: 696 VRASDKK-------SIGFLADYRRMNVGITRAKSSILVVGCASTLREDKHW 739
VR+S ++GFL + +R NV +TRAK+ ++VVG L D W
Sbjct: 881 VRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPDW 931
Score = 33.5 bits (75), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 258 NASQLEAIHE---GLLRKAFVLIQGPPGTGKTQTILGLLSAILHATP 301
N QL+A+ G R A +I GPPGTGKT T++ + ++ P
Sbjct: 500 NPEQLQAMKHIVMGTTRPAPYIIFGPPGTGKTVTLVEAIKQVVKHLP 546
>sp|Q9HCE1|MOV10_HUMAN Putative helicase MOV-10 OS=Homo sapiens GN=MOV10 PE=1 SV=2
Length = 1003
Score = 106 bits (265), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 113/410 (27%), Positives = 181/410 (44%), Gaps = 66/410 (16%)
Query: 373 RVRVLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVRIGLKAHHSVNSVAIDHLVEQ 432
+ +L CAPSNS D + RL R + P + L + V D +
Sbjct: 547 KAHILACAPSNSGADLLCQRL----------RVHLPSSIYRLLAPSRDIRMVPED-IKPC 595
Query: 433 KRDDSAADKQKHGATRKDRDSIRSAILNEAVIVCSTLSFSGSALLSK--LNHGFDVVIID 490
D+ + A +K L E ++ +TL +G + ++ ++H F + ID
Sbjct: 596 CNWDAKKGEYVFPAKKK---------LQEYRVLITTLITAGRLVSAQFPIDH-FTHIFID 645
Query: 491 EAAQAVEPATLVPLA-------TG--CKQVFLVGDPVQLPATVISPVAEHLGYGTSLFKR 541
EA +EP +LV +A TG Q+ L GDP QL + SP+ + G G SL +R
Sbjct: 646 EAGHCMEPESLVAIAGLMEVKETGDPGGQLVLAGDPRQLGPVLRSPLTQKHGLGYSLLER 705
Query: 542 LQRA---------GYP---VKMLKTQYRMHPEVRSFPSREFYDEALEDGSDVEDYT--TR 587
L GY + L YR HP + P++ +Y+ L+ +DV D R
Sbjct: 706 LLTYNSLYKKGPDGYDPQFITKLLRNYRSHPTILDIPNQLYYEGELQACADVVDRERFCR 765
Query: 588 DWHEYRCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISMYPQLK------ 641
R P F + GK+ + S S+ N +E V L++ P K
Sbjct: 766 WAGLPRQGFPIIFHGVM-GKDEREGNSPSFFNPEEAATVTSYLKLLLA--PSSKKGKARL 822
Query: 642 SSSQLAIISPYRHQVKQFQERF----KETFGVESQKVVDITTVDGCQGREKDVAIFSCVR 697
S + +ISPYR QV++ + +E G++ K + + +V+ QG+E+ V + S VR
Sbjct: 823 SPRSVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILISTVR 882
Query: 698 ASDKK-------SIGFLADYRRMNVGITRAKSSILVVGCASTLREDKHWN 740
+S ++GFL + +R NV +TRAK+ +++VG L D W
Sbjct: 883 SSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIIVGNPLLLGHDPDWK 932
Score = 33.5 bits (75), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 258 NASQLEAIHE---GLLRKAFVLIQGPPGTGKTQTILGLLSAILHATP 301
N QL+A+ G R A +I GPPGTGKT T++ + ++ P
Sbjct: 500 NPEQLQAMRHIVTGTTRPAPYIIFGPPGTGKTVTLVEAIKQVVKHLP 546
>sp|Q8R151|ZNFX1_MOUSE NFX1-type zinc finger-containing protein 1 OS=Mus musculus GN=Znfx1
PE=2 SV=3
Length = 1909
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 139/291 (47%), Gaps = 18/291 (6%)
Query: 458 ILNEAVIVCSTLSFSGSALLSKLNHGFD--VVIIDEAAQAVEPATLVPLATGCKQVFLVG 515
IL +A +V ++ +G+A ++ + +VI++EAA+ +E T+ L+ C+ + L+G
Sbjct: 967 ILKDAEVV--GMTTTGAAKYRQILQQVEPRIVIVEEAAEVLEAHTIATLSKACQHLILIG 1024
Query: 516 DPVQL-PATVISPVAEHLGYGTSLFKRLQRAGYPVKMLKTQYRMHPEVRSFPSREFYDEA 574
D QL P+ + +A++ SLF+RL + P L Q+RM PE+ + Y +
Sbjct: 1025 DHQQLRPSANVYDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMRPEIARLLTPHIYQD- 1083
Query: 575 LEDGSDVEDYTTRDWHEYRCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLI 634
LE+ V Y + + FF H E + S N E FV+ L L+
Sbjct: 1084 LENHPSVLKY-----EQIKGVSSNLFFVEHNFPEQEIQEGKSHQNQHEAHFVVELCQYLL 1138
Query: 635 SMYPQLKSSSQLAIISPYRHQVKQFQERFKETFGVESQKVVDITTVDGCQGREKDVAIFS 694
Q SQ+ I++ Y Q+ ++ V++ + + VD QG E D+ + S
Sbjct: 1139 C---QEYLPSQITILTTYTGQLFCL----RKLMPVKTFAGIKVHVVDKYQGEENDIILLS 1191
Query: 695 CVRASDKKSIGFLADYRRMNVGITRAKSSILVVGCASTLREDKHWNNLVKS 745
VR++ + +GFL R+ V ++RAK + +G L + W+ ++ +
Sbjct: 1192 LVRSNQEGKVGFLQIPNRICVALSRAKKGMYCIGNMQMLAKVPLWSRIIHT 1242
Score = 37.7 bits (86), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 260 SQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAIL 297
SQ+EA+ L K +IQGPPGTGKT L ++ A+L
Sbjct: 594 SQMEALQFALT-KELAIIQGPPGTGKTYVGLKIVQALL 630
>sp|Q9URU2|DNA2_SCHPO DNA replication ATP-dependent helicase/nuclease dna2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dna2 PE=1 SV=2
Length = 1397
Score = 96.3 bits (238), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 110/360 (30%), Positives = 163/360 (45%), Gaps = 34/360 (9%)
Query: 445 GATRKDRDSIRSAILNEAVIVCSTLSFSGSALLSKLNHGFDVVIIDEAAQAVEPATLVPL 504
G T D S++ + ++ CS+L S + FD IIDEA+Q P L PL
Sbjct: 1023 GTTFDDLASLKHFYEDPQIVACSSLGVYHSIFNKR---KFDYCIIDEASQIPLPICLGPL 1079
Query: 505 ATGCKQVFLVGDPVQLPATVISPVAEHLGYGTSLFKRL-QRAGYPVKMLKTQYRMHPEVR 563
K V LVGD QLP V + G SLFK L ++ V L+ QYRM+ ++
Sbjct: 1080 QLAEKFV-LVGDHYQLPPLVKNSRTSKDGLSLSLFKLLSEKHPEAVTTLRLQYRMNEDIN 1138
Query: 564 SFPSREFYDEALEDGSDV---EDYTTRDWHEYRCFGPFSFFDIH-EGKESQPAGSGSWIN 619
S S Y L GS + H P S +H K P+ S + N
Sbjct: 1139 SLSSELIYGGNLVCGSKTISQKKLILPKAHLSDGL-PDSSSSLHWVNKLINPSHSVIFFN 1197
Query: 620 IDEVDFV------LLLFHKLISMYPQLKSS--------SQLAIISPYRHQVKQFQERFKE 665
D++ V +L H + Q SS S + IIS Y+ QV+ + K
Sbjct: 1198 TDDILGVESKTNNILENHTEAFLIEQAVSSFLERGVKQSSIGIISIYKSQVELLSKNLKS 1257
Query: 666 TFGVESQKVVDITTVDGCQGREKDVAIFSCVRASDKKSIG-FLADYRRMNVGITRAKSSI 724
+E I TVD QGR+KD+ + S VR++ K +G L D+ R+NV ++RAK
Sbjct: 1258 FTEIE------INTVDRYQGRDKDIILISFVRSNSKNLVGELLRDWHRLNVALSRAKVKC 1311
Query: 725 LVVGCASTLREDKHWNNLVKSAEKQDCLFRVSKPYASFFSDEN---LESMRKNATTDNVQ 781
++ G STL ++L+K EK +F +++ + DEN ++ + ATT+N +
Sbjct: 1312 IMFGSLSTLSSSNIVSHLLKLLEKNKWIFTLNENDIATKFDENSSPIKDCSQVATTNNAK 1371
>sp|P38859|DNA2_YEAST DNA replication ATP-dependent helicase/nuclease DNA2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DNA2 PE=1 SV=1
Length = 1522
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 111/415 (26%), Positives = 181/415 (43%), Gaps = 74/415 (17%)
Query: 375 RVLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVRIGLKAHHSVNSVAIDHLVEQKR 434
RVL+ + ++SA+D I+++L NT I I+R+G+K H V+
Sbjct: 1097 RVLLTSYTHSAVDNILIKLRNTNI----------SIMRLGMK--HKVH------------ 1132
Query: 435 DDSAADKQKHG---ATRKDRDSIRSAILNEAVIVCSTLSFSGSALLSKLNHG-FDVVIID 490
D QK+ A+ K + S I + +V+ + L + +L LN FD VI+D
Sbjct: 1133 ----PDTQKYVPNYASVKSYNDYLSKINSTSVVATTCLGIND--ILFTLNEKDFDYVILD 1186
Query: 491 EAAQAVEPATLVPLATGCKQVFLVGDPVQLPATVISPVAEHLGYGTSLFKRL-QRAGYPV 549
EA+Q P L PL G + +VGD QLP V + A G SLFK ++ V
Sbjct: 1187 EASQISMPVALGPLRYG-NRFIMVGDHYQLPPLVKNDAARLGGLEESLFKTFCEKHPESV 1245
Query: 550 KMLKTQYRMHPEVRSFPSREFYDEALEDGSD------VEDYTTRDWHEYRCFGPFS---F 600
L QYRM ++ + + YD L+ G++ +E YR S
Sbjct: 1246 AELTLQYRMCGDIVTLSNFLIYDNKLKCGNNEVFAQSLELPMPEALSRYRNESANSKQWL 1305
Query: 601 FDIHEGKESQPAGSGSWINIDEVDFVL---------------LLFHKLISMYPQLKSSSQ 645
DI E P ++N D ++ L + M
Sbjct: 1306 EDILE-----PTRKVVFLNYDNCPDIIEQSEKDNITNHGEAELTLQCVEGMLLSGVPCED 1360
Query: 646 LAIISPYRHQVKQFQERFKETF--GVESQKVVDITTVDGCQGREKDVAIFSCVRASDKKS 703
+ +++ YR Q++ ++ F + G+E I T D QGR+K I S VR + + +
Sbjct: 1361 IGVMTLYRAQLRLLKKIFNKNVYDGLE------ILTADQFQGRDKKCIIISMVRRNSQLN 1414
Query: 704 IG-FLADYRRMNVGITRAKSSILVVGCASTLREDKHWNNLVKSAEKQDCLFRVSK 757
G L + RR+NV +TRAKS ++++G ST+ + V E+++ ++ + K
Sbjct: 1415 GGALLKELRRVNVAMTRAKSKLIIIGSKSTIGSVPEIKSFVNLLEERNWVYTMCK 1469
>sp|Q9P2E3|ZNFX1_HUMAN NFX1-type zinc finger-containing protein 1 OS=Homo sapiens GN=ZNFX1
PE=1 SV=2
Length = 1918
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 138/292 (47%), Gaps = 20/292 (6%)
Query: 458 ILNEAVIVCSTLSFSGSALLSKLNHGFD--VVIIDEAAQAVEPATLVPLATGCKQVFLVG 515
IL +A +V ++ +G+A ++ + +VI++EAA+ +E T+ L+ C+ + L+G
Sbjct: 974 ILKDAQVV--GMTTTGAAKYRQILQKVEPRIVIVEEAAEVLEAHTIATLSKACQHLILIG 1031
Query: 516 DPVQL-PATVISPVAEHLGYGTSLFKRLQRAGYPVKMLKTQYRMHPEVRSFPSREFYDEA 574
D QL P+ + +A++ SLF+RL + P L Q+RM PE+ + Y +
Sbjct: 1032 DHQQLRPSANVYDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMCPEIARLLTPHIYQD- 1090
Query: 575 LEDGSDVEDYTTRDWHEYRCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLI 634
LE+ V Y + + FF H E + S N E FV+ L +
Sbjct: 1091 LENHPSVLKY-----EKIKGVSSNLFFVEHNFPEQEIQEGKSHQNQHEAHFVVELCKYFL 1145
Query: 635 SMYPQLKSSSQLAIISPYRHQVKQFQERF-KETFGVESQKVVDITTVDGCQGREKDVAIF 693
Q SQ+ I++ Y Q+ ++ +TF V + VD QG E D+ +
Sbjct: 1146 C---QEYLPSQITILTTYTGQLFCLRKLMPAKTFAG-----VRVHVVDKYQGEENDIILL 1197
Query: 694 SCVRASDKKSIGFLADYRRMNVGITRAKSSILVVGCASTLREDKHWNNLVKS 745
S VR++ + +GFL R+ V ++RAK + +G L + W+ ++ +
Sbjct: 1198 SLVRSNQEGKVGFLQISNRICVALSRAKKGMYCIGNMQMLAKVPLWSKIIHT 1249
Score = 38.9 bits (89), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 260 SQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAIL 297
SQ+EA+ L R+ +IQGPPGTGKT L ++ A+L
Sbjct: 601 SQMEALQFALTRE-LAIIQGPPGTGKTYVGLKIVQALL 637
>sp|F6QXW0|DNA2_XENTR DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus
tropicalis GN=dna2 PE=3 SV=1
Length = 1048
Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 106/232 (45%), Gaps = 36/232 (15%)
Query: 528 VAEHLGYGTSLFKRLQRAGYPVKMLKTQYRMHPEVRSFPSREFYDEALEDGSD-VEDYTT 586
+ LG SLFKRL+R V L QYRM+ ++ + ++ Y+ LE SD V +
Sbjct: 795 LVRELGMSESLFKRLERNQEAVVQLTVQYRMNSQIMALSNKLVYEGRLECASDRVSNAVV 854
Query: 587 RDWH--------EYR-------------CFGPFSFFD---IHEGKESQPAGSGSWINIDE 622
+ H E+R P F + I + + G +WI
Sbjct: 855 KLPHIKTLLLELEFRESQESMWIKDVLEPSNPVCFLNTEKIPALETEEKGGISNWIEAKL 914
Query: 623 VDFVLLLFHKLISMYPQLKSSSQLAIISPYRHQVKQFQERFKETFGVESQKVVDITTVDG 682
V + LF K P S + II+PYR Q+K F S V++ TVD
Sbjct: 915 VFCLTKLFLK-AGCRP-----SDIGIIAPYRQQLKVISNYFNSL----SASAVEVNTVDK 964
Query: 683 CQGREKDVAIFSCVRASDKKSIG-FLADYRRMNVGITRAKSSILVVGCASTL 733
QGR+K V I S VR++ +G L D+RR+NV +TRAK ++++GC TL
Sbjct: 965 YQGRDKSVIIVSFVRSNIDGKLGDLLKDWRRLNVALTRAKHKLIMLGCVPTL 1016
Score = 37.7 bits (86), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 258 NASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAI 296
N Q +A+ LL K + LI G PGTGKT TI L+S +
Sbjct: 628 NKPQKQAMKRVLLSKDYTLIVGMPGTGKTTTICTLVSTL 666
>sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain OS=Danio rerio GN=helz PE=2
SV=1
Length = 1860
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 111/418 (26%), Positives = 180/418 (43%), Gaps = 64/418 (15%)
Query: 375 RVLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVRIGLKAHHSVNSVAIDHLVEQKR 434
RVL+C SNSA D + L+ + N + + +R+ + + V +V LV+Q
Sbjct: 685 RVLICTHSNSAADLYIKDYLHPYVEAGNPHA---RPLRVYFR-NRWVKTV--HPLVQQYC 738
Query: 435 DDSAADKQKHGATRKDRDSIRSAILNEAVIVCSTLSFSGSALLSKLNHG-FDVVIIDEAA 493
S A TR+D + R +V TLS S L G F +++DEAA
Sbjct: 739 LISGAHFTFQMPTRQDVERHR--------VVVVTLSTSQYLCQLDLEPGIFTHILLDEAA 790
Query: 494 QAVEPATLVPLATGCK--QVFLVGDPVQLPATVISPVAEHLGYGTSLFKRLQR---AGYP 548
QA+E T++PLA K +V L GD +QL V S A SL RL + YP
Sbjct: 791 QAMECETIMPLALAVKSTRVVLAGDHMQLSPFVYSEFARERNLHVSLLDRLYEHYPSEYP 850
Query: 549 VKMLKTQ-YRMHPEVRSFPSREFYDEALEDGSDVEDYTTRDWHEYRCFGPFSFFDIHEGK 607
++L + YR H + ++ S FY+ L + ++ F P +FF G+
Sbjct: 851 CRILLCENYRSHEAIINYTSDLFYEGKL--------MASGKQPPHKDFYPLTFFTA-RGE 901
Query: 608 ESQPAGSGSWINIDEVDFVLLLFHKLISMYP----QLKSSSQLAIISPYRHQVKQFQERF 663
+ Q S ++ N EV ++ ++ +P +L+ S + ++SPY QV + +
Sbjct: 902 DVQEKNSTAYYNNAEVFEIVERVEEMRKKWPVSWGKLEEGS-IGVVSPYADQVFRIRAEL 960
Query: 664 KETFGVESQKVVDITTVDGCQGREKDVAIFSCVR---------------------ASDKK 702
++ E V + V QG++ V S VR +++
Sbjct: 961 RKKRMSE----VSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTAIKRKEQLVEDSTEDL 1016
Query: 703 SIGFLADYRRMNVGITRAKSSILVVG----CASTLREDKHWNNLVKSAEKQDCLFRVS 756
GFL++Y+ +N ITRA+S + VVG S R K W + + L ++
Sbjct: 1017 DYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSVGRCRKFWETFISICHENHSLHGIT 1074
>sp|O74465|HRR1_SCHPO Helicase required for RNAi-mediated heterochromatin assembly 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hrr1 PE=1 SV=2
Length = 999
Score = 87.0 bits (214), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 113/254 (44%), Gaps = 17/254 (6%)
Query: 486 VVIIDEAAQAVEPATLVPLATGCKQVFLVGDPVQLP--ATVISPVAEHLGYGTSLFKRLQ 543
+ I+EAA +E + + +Q+ L+GD QL + + + S+F+RL
Sbjct: 707 ICFIEEAADVLEGPIIPAVFPSLEQLVLIGDHKQLRPGCSTYALRQDPFNLSISMFERLV 766
Query: 544 RAGYPVKMLKTQYRMHPEVRSFPSREFYDEALEDGSDVEDYTTRDWHEYRCFGPFSFFDI 603
L Q RMHP++R S + ED SD E T+ W G F +
Sbjct: 767 ENDMEYTRLTMQRRMHPQIRRLVSSVY-----EDLSDYE--ITKYWPSIPGMGEIRRFFL 819
Query: 604 HEGKESQPAGSGSWINIDEVDFVLLLFHKLIS--MYPQLKSSSQLAIISPYRHQVKQFQE 661
+ G S IN+ E ++ LI+ + PQ ++ ++ Y Q +
Sbjct: 820 THSRIEDNDGFASKINLFEAQMLVQFAVYLINNGVEPQ-----KITCLTFYAAQKDLIER 874
Query: 662 RFKETFGVESQKVVDITTVDGCQGREKDVAIFSCVRASDKKSIGFLADYRRMNVGITRAK 721
E+ E + + + TVDG QG E DV + S VR +D+ +GFL+ R+ V ++RA+
Sbjct: 875 LLSESLNRE-KHFIKVATVDGYQGEENDVVLLSLVRNNDRTEVGFLSSPHRVCVSLSRAR 933
Query: 722 SSILVVGCASTLRE 735
+ + G A + E
Sbjct: 934 RGLFIFGNAQLVAE 947
Score = 38.9 bits (89), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 246 PGLLHEYIKENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAILHATPARV 304
PG EYI + +SQL+A ++ +L K +IQGPPGTGK+ L + +L T + V
Sbjct: 367 PG---EYILD---SSQLKA-YQSMLTKRLSIIQGPPGTGKSFVTLKAIETLLENTHSHV 418
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 312,514,308
Number of Sequences: 539616
Number of extensions: 13810934
Number of successful extensions: 40468
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 108
Number of HSP's that attempted gapping in prelim test: 40016
Number of HSP's gapped (non-prelim): 352
length of query: 824
length of database: 191,569,459
effective HSP length: 126
effective length of query: 698
effective length of database: 123,577,843
effective search space: 86257334414
effective search space used: 86257334414
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)